Citrus Sinensis ID: 037562

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670
Protein Sequence
MKVLKIQGYSSWMWKEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRVIGRGR
Secondary Structure (PSIPRED)
ccEEEEEccccccHHHHcccccccHHEEccccccccEEcccccccccccEEEEEccccccccccccccccccccEEEEcccccccEEEcccHHHHHHHccEEEEccccccEEEEEcccccccccEEEEccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccccHHHHHccccEEccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHccEEEEEEHcccHHEEcccccccHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHEHcccccEEEEEEEccHHcccHHEHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHccHHHcHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHccc
Coil and Loop (DISEMBL)
mkvlkiqgysSWMWKEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDhlinlvpsstsfqnltNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISfcsgncaftfpsleilvvnycpnmkifsggelstpnlhkvqlsrwdgeeHWIWVHDLNTTIKYLYLKKLGEFLQSqrsristpvlslnLQSKLEILPamvdgvwsddnslqLEATTLFINLlsfdrsppideviqsgvvpRFVEFLMRQDYPQLQFKAAWALtniasgtsentkvvidhgAVPIFVKLLaspsvdvrKQTVWALgnvagdsprcrdLVLSQGALIPLLAELNENANLSMLRTATWTLfnfcrgkpqppfnqvrpaLPVLAQLIRSNDEEVLTDACWALsylsdgtndKVQAVIEAGVYPRLVELLghssssvltpALRTIRnivkgddfqtqciincgalpYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDsgligpivnllqntefdtKKEAAWAISNATKFGTHEQIKHLVREgcvkplcdlllcadpkIVTVCLEGLENILKVGVAEmntgtavgdFNQYAQLVEEAEGLEKIENlqshddngiSEKAVEILETYWSSRVIGRGR
Flexible Loop (DISEMBL)
mkvlkiqgysswmwkEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKivltssiaktlvRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIfsggelstpnLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWAlgnvagdsprCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGhssssvltpALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENlqshddngisEKAVEILEtywssrvigrgr
Low Complexity Region (SEG)
MKVLKIQGYSSWMWKEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPllaelnenanlSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRVIGRGR
Disordered region (IsUnstruct)
***LKIQGYSSWMWKEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGL***************EKAVEILETYWSSRV*****
Disordered Region (DISOPRED)
*KVLK**GYSSWMWKEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIV*******QDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFS*****TPNLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSR*IG***
Disordered Region (DISEMBL)
MKVLKIQGYSSWMWKEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRVIGRGR
Disordered Region (DISPRO)
MKVLKIQGYSSWMWKEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMK***********L*******WDGEEHWIWVHDLNTTIKYLYLKKLGEFLQS************NLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVLKIQGYSSWMWKEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRVIGRGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	670	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.668	0.851	0.730	0.0
Q96321	532	Importin subunit alpha-1	no	no	0.670	0.843	0.705	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.647	0.812	0.723	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.671	0.853	0.703	0.0
O04294	531	Importin subunit alpha-2	no	no	0.629	0.794	0.687	1e-172
Q76P29	516	Importin subunit alpha-B	yes	no	0.643	0.835	0.571	1e-136
O35345	536	Importin subunit alpha-7	yes	no	0.619	0.774	0.578	1e-129
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.619	0.774	0.578	1e-129
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.619	0.774	0.575	1e-128
O60684	536	Importin subunit alpha-7	yes	no	0.619	0.774	0.575	1e-128

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/452 (73%), Positives = 377/452 (83%), Gaps = 4/452 (0%)

Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           LKK  E LQ+Q    ++    ++   KLE LPAM+ GV+SDDN+LQLEATT F  LLS +
Sbjct: 46  LKKRREGLQAQAPVPASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIE 103

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           RSPPI+EVIQSGVVPRFV+FL R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIF
Sbjct: 104 RSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 163

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389
           VKLL S S DVR+Q VWALGNVAGDSP+CRDLVL+ GAL+PLLA+LNE+  LSMLR ATW
Sbjct: 164 VKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 223

Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQP F Q RPALP LA+LI SNDEEVLTDACWALSYLSDGTNDK+QAVIEA
Sbjct: 224 TLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 283

Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV PRLVELL H S SVL PALRT+ NIV GDD QTQCII+  ALP  L +L  N ++SI
Sbjct: 284 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSI 343

Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GN++QIQAVI++G+IGP+VNLLQ  EFD KKEAAWAISNAT  G+H+
Sbjct: 344 KKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD 403

Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK+LV EGC+KPLCDLL+C D +IVTVCLEGLENILKVG  E +   A GD N ++Q++
Sbjct: 404 QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG--ETDKTLAAGDVNVFSQMI 461

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           +EAEGLEKIENLQSHD+N I EKAV+ILE YW
Sbjct: 462 DEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 493

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/452 (70%), Positives = 375/452 (82%), Gaps = 3/452 (0%)

Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           +KK  E +Q+ +   S    S++   KL+ L  MV GVWSDD +LQLE+TT F  LLS +
Sbjct: 46  MKKRREGMQALQGFPSASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIE 103

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           RSPPI+EVI +GVVPRFVEFL ++DYP +QF+AAWALTNIASGTS++TKVVIDH AVPIF
Sbjct: 104 RSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIF 163

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389
           V+LLASPS DVR+Q VWALGNVAGDSPRCRDLVL  GAL+PLL +LNE+A LSMLR ATW
Sbjct: 164 VQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATW 223

Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQP F+QV+PALP L +LI S+DEEVLTDACWALSYLSDGTNDK+Q VI+A
Sbjct: 224 TLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQA 283

Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV P+LVELL H S SVL PALRT+ NIV GDD QTQC+IN GALP   ++L  NH++SI
Sbjct: 284 GVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSI 343

Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GN++QIQ V+++ LI P+V+LLQN EFD KKEAAWAISNAT  G+H+
Sbjct: 344 KKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHD 403

Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK+LV +GC+KPLCDLL+C DP+I+TVCLEGLENILKVG AE N G   GD N YAQL+
Sbjct: 404 QIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGH-TGDMNYYAQLI 462

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           ++AEGLEKIENLQSHD+N I EKAV+ILETYW
Sbjct: 463 DDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/438 (72%), Positives = 370/438 (84%), Gaps = 4/438 (0%)

Query: 226 TPVL--SLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV 283
           +P+L  S  LQ KLE LPAMV  V SDD+++QLEATT F  LLS +RSPPI+EVI +GVV
Sbjct: 64  SPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVV 123

Query: 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQ 343
           PRF+ FL R+DYPQLQF+AAWALTNIASGTS+NTKVV++ GAVPIFVKLL+SPS DVR+Q
Sbjct: 124 PRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQ 183

Query: 344 TVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPF 403
            VWALGNVAGDSP+CRDLVL+ G L PLL +LNE+A LSMLR ATWTL NFCRGKPQP F
Sbjct: 184 AVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNF 243

Query: 404 NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS 463
            QV+PAL  L +LI S DEEVLTDACWALSYLSDGTNDK+QAVIE+GV+PRLVELL H S
Sbjct: 244 EQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPS 303

Query: 464 SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG 523
           +SVL PALRT+ NIV GDD QTQC+I+  ALP  L++L +NH++SIKKE  W ISNIT G
Sbjct: 304 ASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAG 363

Query: 524 NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPL 583
           NREQIQAVI++ +I P+V+LLQ  EFD KKEAAWAISNAT  GTH+QIK+LV +GC+KPL
Sbjct: 364 NREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPL 423

Query: 584 CDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS 643
           CDLL+C DP+IVTVCLEGLENILKVG AE N G   GD N YAQ++++AEGLEKIENLQS
Sbjct: 424 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG--AGDVNSYAQMIDDAEGLEKIENLQS 481

Query: 644 HDDNGISEKAVEILETYW 661
           HD+  I EKAV++LE+YW
Sbjct: 482 HDNTEIYEKAVKMLESYW 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/452 (70%), Positives = 367/452 (81%), Gaps = 2/452 (0%)

Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           LKK  E L   +   ST  +S +L  KLE LP ++ GVWSDD+SLQLE TT F  LLS +
Sbjct: 46  LKKRREGLLQAQQFPSTAAVS-HLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIE 104

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           R+PPI+EVIQSGVVPRFVEFL R DYPQLQF+AAWALTNIASGTSENTKVVID+G+VPIF
Sbjct: 105 RNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIF 164

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389
           ++LL+SPS DVR+Q VWALGN+AGDSP+ RDLVL  GAL+ LLA+ NE A LSMLR ATW
Sbjct: 165 IRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATW 224

Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQP F Q + ALP L +LI SNDEEVLTDACWALSYLSDGTNDK+QAVIEA
Sbjct: 225 TLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 284

Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV  RLVELL HSS SVL PALRT+ NIV GDD QTQ +I+  ALP  +++L  N+++SI
Sbjct: 285 GVCSRLVELLLHSSPSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSI 344

Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GNR QIQ VI++G+I P+V LLQN EF+ KKEAAWAISNAT  G H+
Sbjct: 345 KKEACWTISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHD 404

Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK LV +GC+KPLCDLL+C DP+IVTVCLEGLENILK+G A+ + G   G  N YAQL+
Sbjct: 405 QIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEG-VNVYAQLI 463

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           +EAEGLEKIENLQSHD+  I EKAV+ILETYW
Sbjct: 464 DEAEGLEKIENLQSHDNTEIYEKAVKILETYW 495

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  605 bits (1561), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 291/423 (68%), Positives = 352/423 (83%), Gaps = 1/423 (0%)

Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
           LPAMV G+WS+D++ QLEAT L   LLS +++PPI+EV+QSGVVPR V+FL R D+P+LQ
Sbjct: 77  LPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQ 136

Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359
           F+AAWALTNIASGTSENT V+I+ GAVPIF++LL+S S DVR+Q VWALGNVAGDSP+CR
Sbjct: 137 FEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCR 196

Query: 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS 419
           DLVLS GA+ PLL++ NEN  LSMLR ATWTL NFCRGKP P F Q +PALPVL +L++S
Sbjct: 197 DLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQS 256

Query: 420 NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479
            DEEVLTDACWALSYLSD +NDK+QAVIEAGV PRL++LLGHSS SVL PALRTI NIV 
Sbjct: 257 MDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVT 316

Query: 480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGP 539
           GDD QTQ +++  ALP  L++L +N+++SIKKE  W ISNIT GN +QIQAVID+G+I  
Sbjct: 317 GDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQS 376

Query: 540 IVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCL 599
           +V +LQ+ EF+ KKEAAW ISNAT  GTH+QIK +V +GC+KPLCDLL C D K+VTVCL
Sbjct: 377 LVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCL 436

Query: 600 EGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659
           E LENIL VG AE N G   G+ N YAQ+++EAEGLEKIENLQSHD+N I +KAV+ILET
Sbjct: 437 EALENILVVGEAEKNLG-HTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILET 495

Query: 660 YWS 662
           +W+
Sbjct: 496 FWT 498

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  486 bits (1250), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 251/439 (57%), Positives = 322/439 (73%), Gaps = 8/439 (1%)

Query: 225 STPVLSLNL-QSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV 283
           STPV   +L   +LE LP++V  + S++  L L++TT F  LLS ++SPPI+EVI++G+V
Sbjct: 53  STPVKVDSLINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIV 112

Query: 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQ 343
           PR V+FL  QD+PQLQF+AAWALTNIASGT E T+VVI++GA+ +FV LL+SP  DVR+Q
Sbjct: 113 PRLVKFLYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQ 172

Query: 344 TVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA--NLSMLRTATWTLFNFCRGKPQP 401
            VWALGN+AGDS  CRDLVLS  AL PLL+ L   A   +SM+R ATWTL NFCRGKPQP
Sbjct: 173 AVWALGNIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQP 232

Query: 402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH 461
           PF  VR +LPVLA+LI   DEEVL DACWALSYLSDG+N+++Q VI+A V  ++VELLGH
Sbjct: 233 PFEIVRASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGH 292

Query: 462 SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521
            + +V TPALRTI NIV GDD QTQ +++  AL + L++L  + + +I+KE  W ISNIT
Sbjct: 293 PTIAVQTPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNIT 351

Query: 522 CGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVK 581
            G++ QIQ VID+ +I  +V LL N EF+ +KEAAWAISNAT  GT +QI  LV +GCVK
Sbjct: 352 AGDKNQIQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVK 411

Query: 582 PLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENL 641
           PLCDLL  +DP+I+ V LEG+ENIL  G  E      V   N Y +++E+A+GL KI +L
Sbjct: 412 PLCDLLKVSDPRIINVALEGIENILVAGKKEAQ----VTGVNPYKKIIEDADGLGKIYDL 467

Query: 642 QSHDDNGISEKAVEILETY 660
           Q H +    EK   I+ TY
Sbjct: 468 QHHMNKDTFEKVSRIISTY 486

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  464 bits (1193), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/422 (57%), Positives = 306/422 (72%), Gaps = 7/422 (1%)

Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPRFVEFLMRQDYPQLQFK 301
           MV+ ++SDD+ LQL  T  F  LLS + SPPIDEVI + GVV RFVEFL R +   LQF+
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 302 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361
           AAWALTNIASGTS+ TK+VI+ GAVPIF++LL S   DV++Q VWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDY 204

Query: 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSN 420
           VL+   L PLL  L ++  L+M R A W L N CRGK P P F +V P LPVL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480
           D ++L DACWALSYLSDG N+K+QAVI++GV  RLVELL H+   V +PALR + NIV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPI 540
           DD QTQ I+NC ALP  L +L  + +ESI+KE  W ISNIT GNR QIQAVID+ +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 541 VNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE 600
           + +LQ  EF T+KEAAWAI+NAT  GT EQI++LV  GC+KPLCDLL   D KIV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 601 GLENILKVGVAE-MNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659
           GLENIL++G  E   +G+ V   N Y  L+EEA GL+KIE LQSH++  I +KA +++E 
Sbjct: 444 GLENILRLGEQESKRSGSGV---NPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 660 YW 661
           Y+
Sbjct: 501 YF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/422 (57%), Positives = 306/422 (72%), Gaps = 7/422 (1%)

Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPRFVEFLMRQDYPQLQFK 301
           MV+ ++SDD  LQL  T  F  LLS + SPPIDEVI + GVV RFVEFL R +   LQF+
Sbjct: 85  MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 302 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361
           AAWALTNIASGTS+ TK+VI+ GAVPIF++LL S   DV++Q VWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSN 420
           VL+   L PLL  L ++  L+M R A W L N CRGK P P F +V P LPVL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480
           D ++L DACWALSYLSDG N+K+QAVI++GV  RLVELL H+ + V +PALR + NIV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTG 324

Query: 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPI 540
           DD QTQ I+NC ALP  L +L  + +ESI+KE  W ISNIT GNR QIQAVID+ +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 541 VNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE 600
           + +LQ  EF T+KEAAWAI+NAT  GT EQI++LV  GC+KPLCDLL   D KIV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 601 GLENILKVGVAE-MNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659
           GLENIL++G  E   +G+ V   N Y  L+EEA GL+KIE LQSH++  I +KA +++E 
Sbjct: 444 GLENILRLGEQEGKRSGSGV---NPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 660 YW 661
           Y+
Sbjct: 501 YF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  459 bits (1182), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/422 (57%), Positives = 305/422 (72%), Gaps = 7/422 (1%)

Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG-VVPRFVEFLMRQDYPQLQFK 301
           MV+ ++SDD+ LQL  T  F  LLS + SPPIDEVI +  VV RFVEFL R +   LQF+
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 302 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361
           AAWALTNIASGTS+ TK+VI+ GAVPIF++LL S   DV++Q VWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSN 420
           VL+   L PLL  L ++  L+M R A W L N CRGK P P F +V P LPVL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480
           D ++L DACWALSYLSDG N+K+QAVI++GV  RLVELL H+   V +PALR + NIV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPI 540
           DD QTQ I+NC ALP  L +L  + +ESI+KE  W ISNIT GNR QIQAVID+ +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 541 VNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE 600
           + +LQ  EF T+KEAAWAI+NAT  GT EQI++LV  GC+KPLCDLL   D KIV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 601 GLENILKVGVAE-MNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659
           GLENIL++G  E   +G+ V   N Y  L+EEA GL+KIE LQSH++  I +KA +++E 
Sbjct: 444 GLENILRLGEQEGKRSGSGV---NPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 660 YW 661
           Y+
Sbjct: 501 YF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  459 bits (1182), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/422 (57%), Positives = 305/422 (72%), Gaps = 7/422 (1%)

Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG-VVPRFVEFLMRQDYPQLQFK 301
           MV+ ++SDD+ LQL  T  F  LLS + SPPIDEVI +  VV RFVEFL R +   LQF+
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 302 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361
           AAWALTNIASGTS+ TK+VI+ GAVPIF++LL S   DV++Q VWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSN 420
           VL+   L PLL  L ++  L+M R A W L N CRGK P P F +V P LPVL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480
           D ++L DACWALSYLSDG N+K+QAVI++GV  RLVELL H+   V +PALR + NIV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPI 540
           DD QTQ I+NC ALP  L +L  + +ESI+KE  W ISNIT GNR QIQAVID+ +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 541 VNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE 600
           + +LQ  EF T+KEAAWAI+NAT  GT EQI++LV  GC+KPLCDLL   D KIV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 601 GLENILKVGVAE-MNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659
           GLENIL++G  E   +G+ V   N Y  L+EEA GL+KIE LQSH++  I +KA +++E 
Sbjct: 444 GLENILRLGEQEGKRSGSGV---NPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 660 YW 661
           Y+
Sbjct: 501 YF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	670
356564581	530	PREDICTED: importin subunit alpha-1-like	0.671	0.849	0.758	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.670	0.845	0.767	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.670	0.845	0.763	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.643	0.814	0.780	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.671	0.849	0.75	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.668	0.846	0.753	0.0
224110258	529	predicted protein [Populus trichocarpa]	0.671	0.850	0.752	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.668	0.842	0.756	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.668	0.842	0.756	0.0
119866037	529	Impa2 [Nicotiana benthamiana]	0.670	0.848	0.752	0.0

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/452 (75%), Positives = 390/452 (86%), Gaps = 2/452 (0%)

Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           LKK  E LQ+Q+ +   P+ +  +  KLE LPAMV GVWSDDNS+QLEATT F  LLS +
Sbjct: 46  LKKRREGLQAQQ-QFPAPLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIE 104

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           RSPPI+EVIQ+GVVPRFVEFL+R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIF
Sbjct: 105 RSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 164

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389
           VKLL+SPS DVR+Q VWALGNVAGDSPRCRDLVLSQGAL+PLLA+LNE+A LSMLR ATW
Sbjct: 165 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATW 224

Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQPPF QVRPALP L +L+ SNDEEVLTDACWALSYLSDGTNDK+QAVIEA
Sbjct: 225 TLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 284

Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV  RLV+LL H S SVL PALRT+ NIV GDD QTQCIIN GALP  L++L +NH++SI
Sbjct: 285 GVCARLVQLLIHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSI 344

Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GN+EQIQ VI++GL+ P+VNLLQN EFD KKEAAWAISNAT  G HE
Sbjct: 345 KKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHE 404

Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK+LV +GC+KPLCDLL+C DP+IVTVCLEGLENILKVG AE + G   GD N+YAQ++
Sbjct: 405 QIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGN-TGDVNEYAQMI 463

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           ++AEGLEKIENLQSHD+N I EKAV+ILETYW
Sbjct: 464 DDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/452 (76%), Positives = 389/452 (86%), Gaps = 3/452 (0%)

Query: 211 KKLGEFLQSQRSRISTPVLSLNL-QSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           KK  E LQ+Q+ +  TP+ + ++ + KLE LPAMV GVWSDDNS QLEATT F  LLS +
Sbjct: 47  KKRREGLQAQQ-QFPTPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIE 105

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           RSPPI+EVIQ+GVVPRFVEFL+R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIF
Sbjct: 106 RSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389
           VKLL+SPS DVR+Q VWALGNVAGDSPRCRDLVLS GALIPLLA+LNE+A LSMLR ATW
Sbjct: 166 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATW 225

Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQPPF QVR ALP L +L+ SNDEEVLTDACWALSYLSDGTNDK+QAVIEA
Sbjct: 226 TLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285

Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV PRLV+LL H S SVL PALRT+ NIV GDD QTQ IIN GALP  L +L HNH++SI
Sbjct: 286 GVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSI 345

Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GNR+QIQAVI++GLI P+VNLLQN EFD KKEAAWAISNAT  GTHE
Sbjct: 346 KKEACWTISNITAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHE 405

Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK+LV +GC+KPLCDLL+C DP+IVTVCLEGLENILKVG AE + G   GD N YAQ++
Sbjct: 406 QIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGN-TGDVNLYAQMI 464

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           +EAEGLEKIENLQSHD+N I EKAV+ILETYW
Sbjct: 465 DEAEGLEKIENLQSHDNNEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/452 (76%), Positives = 390/452 (86%), Gaps = 3/452 (0%)

Query: 211 KKLGEFLQSQRSRISTPVLSLNL-QSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           KK  E LQ+Q+ +  TP+ + ++ + KLE LPAMV GVWSDDNS QLEATT F  LLS +
Sbjct: 47  KKRREGLQAQQ-QFPTPLQAASIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIE 105

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           RSPPI+EVIQ+GVVPRFVEFL+R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIF
Sbjct: 106 RSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389
           VKLL+SPS DVR+Q VWALGNVAGDSP+CRDLVLS GALIPLLA+LNE+A LSMLR ATW
Sbjct: 166 VKLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATW 225

Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQPPF QVR ALP L +L+ SNDEEVLTDACWALSYLSDGTNDK+QAVIEA
Sbjct: 226 TLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285

Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV PRLV+LL H S SVL PALRT+ NIV GDD QTQ IIN GALP  L +L HNH++SI
Sbjct: 286 GVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSI 345

Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GNR+QIQAV+++GLI P+VNLLQN EFD KKEAAWAISNAT  GTHE
Sbjct: 346 KKEACWTISNITAGNRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHE 405

Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK+LV +GC+KPLCDLL+C DP+IVTVCLEGLENILKVG AE + G + GD N YAQ++
Sbjct: 406 QIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSMGNS-GDVNLYAQMI 464

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           +EAEGLEKIENLQSHD+N I EKAV+ILETYW
Sbjct: 465 DEAEGLEKIENLQSHDNNEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/432 (78%), Positives = 377/432 (87%), Gaps = 1/432 (0%)

Query: 230 SLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEF 289
           S N++ KLE LP+MV GVWSDD++LQLEATT F  LLS +RSPPI+EVIQ+GVVPRFVE 
Sbjct: 65  SSNMEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEL 124

Query: 290 LMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALG 349
           L+R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIFVKLL SPS DVR+Q VWALG
Sbjct: 125 LVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALG 184

Query: 350 NVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPA 409
           NVAGDSP+CRDLVLS GALIPLLA+LNE+A LSMLR ATWTL NFCRGKPQP F +VRPA
Sbjct: 185 NVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFEKVRPA 244

Query: 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP 469
           LP L +L+ S DEEVLTDACWALSYLSDGTNDK+QAVIEAGV PRLVELL H S SVL P
Sbjct: 245 LPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLVP 304

Query: 470 ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ 529
           ALRT+ NIV GDD QTQCIIN GALP  L +L HNH++SIKKE  W ISNIT GN+EQIQ
Sbjct: 305 ALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQ 364

Query: 530 AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC 589
           AVI++GLIGP+VNLLQN EFD KKEAAWA+SNAT  GTHEQIK LV +GC+KPLCDLL+C
Sbjct: 365 AVIEAGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVC 424

Query: 590 ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGI 649
            DP+IVTVCLEGLENILKVG AE N G + GD N YAQ++++AEGLEKIENLQSHD+N I
Sbjct: 425 PDPRIVTVCLEGLENILKVGEAEKNLGNS-GDVNFYAQMIDDAEGLEKIENLQSHDNNEI 483

Query: 650 SEKAVEILETYW 661
            EKAV+ILETYW
Sbjct: 484 YEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/452 (75%), Positives = 388/452 (85%), Gaps = 2/452 (0%)

Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           LKK  E LQ+ + ++  P+ +  +   LE LPAMV GVWS+DNSLQLEATT F  LLS +
Sbjct: 46  LKKRREGLQAHQ-QLPAPLQNSTVDKNLESLPAMVAGVWSNDNSLQLEATTQFRKLLSIE 104

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           RSPPI+EVIQ+GVVPRFVEFL+R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIF
Sbjct: 105 RSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 164

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389
           VKLL+SPS DVR+Q VWALGNVAGDSPRCRDLVLS GAL+PLLA+LNE+A LSMLR ATW
Sbjct: 165 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATW 224

Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQPPF QVRPALP L +L+ SNDEEVLTDACWALSYLSDGTNDK+QAVIEA
Sbjct: 225 TLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 284

Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV PRL++LL H S SVL PALRT+ NIV GDD QTQCIIN GALP  L++L +NH++SI
Sbjct: 285 GVCPRLMQLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSI 344

Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GN+EQIQ VI++GL+ P+VNLLQ+ EFD KKEA+WAISNAT  GTH+
Sbjct: 345 KKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNATSGGTHD 404

Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK+LV +GCVKPLCDLL+C DP+IVTVCLEGLENILKVG AE + G   GD N YAQ++
Sbjct: 405 QIKYLVSQGCVKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGN-TGDVNVYAQMI 463

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           +EAEGLEKIENLQSHD+N I EK V+ILETYW
Sbjct: 464 DEAEGLEKIENLQSHDNNEIYEKVVKILETYW 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/451 (75%), Positives = 384/451 (85%), Gaps = 3/451 (0%)

Query: 211 KKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDR 270
           KK  E LQ+Q+        +  ++ KLE LP+MV GVWSD++SLQLEATT F  LLS +R
Sbjct: 47  KKRREGLQAQQ--FPAAAHASTVEKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIER 104

Query: 271 SPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV 330
           SPPI+EVIQSGVVPRFVEFL+R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIFV
Sbjct: 105 SPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 164

Query: 331 KLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWT 390
           KLL SPS DVR+Q VWALGNVAGDSPRCRDLVL  GALIPLLA+LNE+A LSMLR ATWT
Sbjct: 165 KLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWT 224

Query: 391 LFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAG 450
           L NFCRGKPQPPF+QV+PALP L +L+ S+DEEVLTDACWALSYLSDGTNDK+QAVIEAG
Sbjct: 225 LSNFCRGKPQPPFDQVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAG 284

Query: 451 VYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIK 510
           V PRLVELL H S SVL PALRT+ NIV GDD QTQ IIN GALP  L +L HNH++SIK
Sbjct: 285 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIK 344

Query: 511 KEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ 570
           KE  W ISNIT GN+EQIQAVI++G+I P+V+LLQ  EFD KKEAAWAISNAT  GTHEQ
Sbjct: 345 KEACWTISNITAGNKEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQ 404

Query: 571 IKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVE 630
           IK+LV +GC+KPLCDLL+C DP+IVTVCLEGLENILKVG AE   G + GD N YAQL++
Sbjct: 405 IKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKTLGNS-GDVNYYAQLID 463

Query: 631 EAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           +AEGLEKIENLQSHD+N I EKAV+ILETYW
Sbjct: 464 DAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/452 (75%), Positives = 386/452 (85%), Gaps = 2/452 (0%)

Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           LKK  E LQ+Q+   +  + S N++ KLE LP+MV GVWS+D +LQLE+TT F  LLS +
Sbjct: 46  LKKRREGLQAQQFPPAI-LSSSNVEKKLENLPSMVAGVWSEDGNLQLESTTQFRKLLSIE 104

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           RSPPI+EVIQ+GVVPRFVEFL+R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIF
Sbjct: 105 RSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 164

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389
           VKLL SPS DVR+Q VWALGNVAGDSP+CRDLVLS GALIPLLA+LNE+A LSMLR ATW
Sbjct: 165 VKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATW 224

Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQPPF QVRPALP L +L+ S DEEVLTD+CWALSYLSDGT+DK+QAVIEA
Sbjct: 225 TLSNFCRGKPQPPFEQVRPALPALERLVHSTDEEVLTDSCWALSYLSDGTDDKIQAVIEA 284

Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV PRLVELL H S SVL PALRT+ NIV GDD QTQCII  GALP  L +L HNH++SI
Sbjct: 285 GVCPRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIITTGALPCLLSLLTHNHKKSI 344

Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GN+EQIQAVI++GLIGP+VNLLQN EFD KKEAAWA+SNAT  GTHE
Sbjct: 345 KKEACWTISNITAGNKEQIQAVIENGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHE 404

Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK LV +GC+KPLCDLL+  DP+IVTV LEGLENILKVG AE N G + GD N YAQ++
Sbjct: 405 QIKFLVSQGCIKPLCDLLVSPDPRIVTVSLEGLENILKVGEAEKNLGNS-GDANFYAQMI 463

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           ++AEGLEKIENLQSHD+N I EKAV+ILETYW
Sbjct: 464 DDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/451 (75%), Positives = 385/451 (85%), Gaps = 3/451 (0%)

Query: 211 KKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDR 270
           KK  E LQ Q+  +   V S  ++ KLE LP+MV GVW+DDN+LQLEATT F  LLS +R
Sbjct: 49  KKRREGLQPQQ--MPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIER 106

Query: 271 SPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV 330
           SPPI+EVIQ+GVV RFVEFLMR+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIFV
Sbjct: 107 SPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166

Query: 331 KLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWT 390
           KLLASPS DVR+Q VWALGNVAGDSPRCRDLVLS GAL+PLLA+LNE+A LSMLR ATWT
Sbjct: 167 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWT 226

Query: 391 LFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAG 450
           L NFCRGKPQPPF+QV+PALP LA+LI SNDEEVLTDACWALSYLSDGTNDK+QAVIEAG
Sbjct: 227 LSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286

Query: 451 VYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIK 510
           V PRLVELL H S SVL PALRT+ NIV GDD QTQ IIN  ALP  L++L +N+++SIK
Sbjct: 287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIK 346

Query: 511 KEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ 570
           KE  W ISNIT GN++QIQAVI++ LI P+VNLLQN EFD KKEAAWAISNAT  G+HEQ
Sbjct: 347 KEACWTISNITAGNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQ 406

Query: 571 IKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVE 630
           IK LV +GC+KPLCDLL+C DP+IVTVCLEGLENILKVG A+ N G   GD N YAQ+++
Sbjct: 407 IKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGN-TGDVNLYAQMID 465

Query: 631 EAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           EAEGLEKIENLQSHD+  I EKAV+ILETYW
Sbjct: 466 EAEGLEKIENLQSHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/451 (75%), Positives = 384/451 (85%), Gaps = 3/451 (0%)

Query: 211 KKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDR 270
           KK  E  Q Q+  I   V S  ++ KLE LP+MV GVW+DDN+LQLEATT F  LLS +R
Sbjct: 49  KKRREGFQPQQ--IPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIER 106

Query: 271 SPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV 330
           SPPI+EVIQ+GVV RFVEFLMR+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIFV
Sbjct: 107 SPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166

Query: 331 KLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWT 390
           KLLASPS DVR+Q VWALGNVAGDSPRCRDLVLS GAL+PLLA+LNE+A LSMLR ATWT
Sbjct: 167 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWT 226

Query: 391 LFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAG 450
           L NFCRGKPQPPF+QV+PALP LA+LI SNDEEVLTDACWALSYLSDGTNDK+QAVIEAG
Sbjct: 227 LSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286

Query: 451 VYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIK 510
           V PRLVELL H S SVL PALRT+ NIV GDD QTQ IIN  ALP  L++L +N+++SIK
Sbjct: 287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIK 346

Query: 511 KEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ 570
           KE  W ISNIT GN++QIQAVI++ LI P+VNLLQN EFD KKEAAWAISNAT  G+HEQ
Sbjct: 347 KEACWTISNITAGNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQ 406

Query: 571 IKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVE 630
           IK LV +GC+KPLCDLL+C DP+IVTVCLEGLENILKVG A+ N G   GD N YAQ+++
Sbjct: 407 IKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGN-TGDVNLYAQMID 465

Query: 631 EAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           EAEGLEKIENLQSHD+  I EKAV+ILETYW
Sbjct: 466 EAEGLEKIENLQSHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119866037|gb|ABM05488.1| Impa2 [Nicotiana benthamiana]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/452 (75%), Positives = 377/452 (83%), Gaps = 3/452 (0%)

Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           LKK  E LQ Q+      + +  ++ KLE LP+MV GVWS+DN+LQLEATT F  LLS +
Sbjct: 46  LKKRREGLQPQQQPFPANLHTSTVEKKLESLPSMVAGVWSNDNNLQLEATTQFRKLLSIE 105

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           RSPPI+EVIQSGVVPRFVEFLMR+D+PQLQF+AAWALTNIASGTS+NT+VVIDHGAVPIF
Sbjct: 106 RSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSDNTRVVIDHGAVPIF 165

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389
           VKLL SPS DVR+Q VWALGNVAGDSPRCRDLVLS GALIPLLA+LNE+  LSMLR ATW
Sbjct: 166 VKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHTKLSMLRNATW 225

Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQPPF QVRPAL  L +L+ SNDEEVLTDACWALSYLSDGTNDK+QAVIEA
Sbjct: 226 TLSNFCRGKPQPPFEQVRPALSALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285

Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV PRLVELL H S SVL PALRT+ NIV GDD QTQCII  GAL   L +L HNH++SI
Sbjct: 286 GVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDLQTQCIIEHGALTCLLSLLTHNHKKSI 345

Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GN+EQIQAVI++GLI P+VNLLQ  EFD KKEAAWAISNAT  GTHE
Sbjct: 346 KKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATSGGTHE 405

Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK LV +GC+KPLCDLL+C DP+IVTVCLEGLENILKVG AE       G  N YAQL 
Sbjct: 406 QIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK---ANTGGINYYAQLT 462

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           ++AEGLEKIENLQSHD+N I EKAV+ILETYW
Sbjct: 463 DDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	670
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.671	0.841	0.729	1.9e-170
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.670	0.843	0.690	1.8e-165
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.673	0.838	0.659	1.6e-157
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.629	0.794	0.673	2.5e-152
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.646	0.803	0.636	1.1e-144
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.664	0.857	0.588	1.4e-133
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.638	0.773	0.589	3.2e-129
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.637	0.774	0.585	1.4e-126
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.643	0.835	0.562	3.1e-122
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.623	0.791	0.578	8.3e-122

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1657 (588.4 bits), Expect = 1.9e-170, P = 1.9e-170
 Identities = 331/454 (72%), Positives = 373/454 (82%)

Query:   211 KKLGEFLQS-QRSRIS-TPV-LSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLS 267
             KK  E LQ+ Q  + + +PV  S  ++ KLE LPAMV GVWSDD SLQLEATT F  LLS
Sbjct:    47 KKRREGLQANQLPQFAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLS 106

Query:   268 FDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVP 327
              +RSPPI+EVI +GVVPRFVEFL R+DYPQLQF+AAWALTNIASGTSENTKVVI+HGAVP
Sbjct:   107 IERSPPIEEVIDAGVVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVP 166

Query:   328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTA 387
             IFV+LLAS S DVR+Q VWALGNVAGDSPRCRDLVL QGALIP           SMLR A
Sbjct:   167 IFVQLLASQSDDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNA 226

Query:   388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI 447
             TWTL NFCRGKPQPPF+QVRPALP L +LI S DEEVLTDACWALSYLSDGTNDK+Q+VI
Sbjct:   227 TWTLSNFCRGKPQPPFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVI 286

Query:   448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE 507
             EAGV PRLVELL H S SVL PALR+I NIV GDD QTQC+I+ GAL   L +L HNH++
Sbjct:   287 EAGVVPRLVELLQHQSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKK 346

Query:   508 SIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT 567
             SIKKE  W ISNIT GNR+QIQAV ++GLI P+VNLLQN EFD KKEAAWAISNAT  G+
Sbjct:   347 SIKKEACWTISNITAGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGS 406

Query:   568 HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQ 627
              +QIK++V +G VKPLCDLL+C DP+I+TVCLEGLENILKVG AE  TG   GD N YAQ
Sbjct:   407 PDQIKYMVEQGVVKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNT-GDVNFYAQ 465

Query:   628 LVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
             L+++AEGLEKIENLQSHD++ I EKAV+ILETYW
Sbjct:   466 LIDDAEGLEKIENLQSHDNSEIYEKAVKILETYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1610 (571.8 bits), Expect = 1.8e-165, P = 1.8e-165
 Identities = 312/452 (69%), Positives = 366/452 (80%)

Query:   210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
             +KK  E +Q+ +   S    S++   KL+ L  MV GVWSDD +LQLE+TT F  LLS +
Sbjct:    46 MKKRREGMQALQGFPSASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIE 103

Query:   270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
             RSPPI+EVI +GVVPRFVEFL ++DYP +QF+AAWALTNIASGTS++TKVVIDH AVPIF
Sbjct:   104 RSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIF 163

Query:   330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATW 389
             V+LLASPS DVR+Q VWALGNVAGDSPRCRDLVL  GAL+P           SMLR ATW
Sbjct:   164 VQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATW 223

Query:   390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
             TL NFCRGKPQP F+QV+PALP L +LI S+DEEVLTDACWALSYLSDGTNDK+Q VI+A
Sbjct:   224 TLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQA 283

Query:   450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
             GV P+LVELL H S SVL PALRT+ NIV GDD QTQC+IN GALP   ++L  NH++SI
Sbjct:   284 GVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSI 343

Query:   510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
             KKE  W ISNIT GN++QIQ V+++ LI P+V+LLQN EFD KKEAAWAISNAT  G+H+
Sbjct:   344 KKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHD 403

Query:   570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
             QIK+LV +GC+KPLCDLL+C DP+I+TVCLEGLENILKVG AE N G   GD N YAQL+
Sbjct:   404 QIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHT-GDMNYYAQLI 462

Query:   630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
             ++AEGLEKIENLQSHD+N I EKAV+ILETYW
Sbjct:   463 DDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1535 (545.4 bits), Expect = 1.6e-157, P = 1.6e-157
 Identities = 300/455 (65%), Positives = 358/455 (78%)

Query:   211 KKLGEFLQSQR---SRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLS 267
             ++ G  LQ Q    + +  P  +  ++ +LE +P MV GV+SDD   QLEATT F  LLS
Sbjct:    49 RREGMMLQQQLPLGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLS 108

Query:   268 FDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVP 327
              +RSPPIDEVI++GV+PRFVEFL R D+PQLQF+AAWALTN+ASGTS++T+VVI+ GAVP
Sbjct:   109 IERSPPIDEVIKAGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVP 168

Query:   328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTA 387
             IFVKLL S S DVR+Q VWALGNVAGDSP CR+LVL+ GAL P           SMLR A
Sbjct:   169 IFVKLLTSASDDVREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNA 228

Query:   388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI 447
             TWTL NFCRGKP  PF QV+PALP+L QLI  NDEEVLTDACWALSYLSDG NDK+QAVI
Sbjct:   229 TWTLSNFCRGKPPTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVI 288

Query:   448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE 507
             EAGV PRLVELLGH S +VL PALRT+ NIV GDD QTQ II  G LP+  ++L  NH++
Sbjct:   289 EAGVCPRLVELLGHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKK 348

Query:   508 SIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT 567
             SIKKE  W ISNIT GN+ QI+AV+ +G+I P+V+LLQN EFD KKEAAWAISNAT  G+
Sbjct:   349 SIKKEACWTISNITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGS 408

Query:   568 HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQ 627
             HEQI++LV +GC+KPLCDLL+C DP+IVTVCLEGLENILKVG A+   G   G  N YAQ
Sbjct:   409 HEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSG-VNLYAQ 467

Query:   628 LVEEAEGLEKIENLQSHDDNGISEKAVEILETYWS 662
             ++EE++GL+K+ENLQSHD+N I EKAV+ILE YW+
Sbjct:   468 IIEESDGLDKVENLQSHDNNEIYEKAVKILERYWA 502

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1486 (528.2 bits), Expect = 2.5e-152, P = 2.5e-152
 Identities = 285/423 (67%), Positives = 344/423 (81%)

Query:   240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
             LPAMV G+WS+D++ QLEAT L   LLS +++PPI+EV+QSGVVPR V+FL R D+P+LQ
Sbjct:    77 LPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQ 136

Query:   300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359
             F+AAWALTNIASGTSENT V+I+ GAVPIF++LL+S S DVR+Q VWALGNVAGDSP+CR
Sbjct:   137 FEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCR 196

Query:   360 DLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS 419
             DLVLS GA+ P           SMLR ATWTL NFCRGKP P F Q +PALPVL +L++S
Sbjct:   197 DLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQS 256

Query:   420 NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479
              DEEVLTDACWALSYLSD +NDK+QAVIEAGV PRL++LLGHSS SVL PALRTI NIV 
Sbjct:   257 MDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVT 316

Query:   480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGP 539
             GDD QTQ +++  ALP  L++L +N+++SIKKE  W ISNIT GN +QIQAVID+G+I  
Sbjct:   317 GDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQS 376

Query:   540 IVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCL 599
             +V +LQ+ EF+ KKEAAW ISNAT  GTH+QIK +V +GC+KPLCDLL C D K+VTVCL
Sbjct:   377 LVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCL 436

Query:   600 EGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659
             E LENIL VG AE N G   G+ N YAQ+++EAEGLEKIENLQSHD+N I +KAV+ILET
Sbjct:   437 EALENILVVGEAEKNLGHT-GEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILET 495

Query:   660 YWS 662
             +W+
Sbjct:   496 FWT 498

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 277/435 (63%), Positives = 337/435 (77%)

Query:   230 SLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEF 289
             SL  +++LE +  M+ GV S+D  LQLEAT  F  LLS +R+PPI+EV+QSGVVP  V+F
Sbjct:    68 SLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQF 127

Query:   290 LMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALG 349
             L R D+ QLQF+AAWALTNIASGTSENT+V+ID GAVP+FVKLL+S S +VR+Q VWALG
Sbjct:   128 LSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALG 187

Query:   350 NVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPPFNQ-VRP 408
             NVAGDSP+CRD VLS  A++            SMLR ATWTL NFCRGKPQP F Q  + 
Sbjct:   188 NVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKA 247

Query:   409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
             ALP L +L+ S DEEVLTDA WALSYLSDGTN+K+Q VI+AGV PRLV+LL H S SVL 
Sbjct:   248 ALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLI 307

Query:   469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
             PALRTI NIV GDD QTQ +I+  ALP  L++L + +++SIKKE  W ISNIT GN  QI
Sbjct:   308 PALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQI 367

Query:   529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588
             Q V  +G+I P++NLL+  EF+ KKEA WAISNAT  G H+QIK LV +GC++PLCDLL 
Sbjct:   368 QEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLP 427

Query:   589 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNG 648
             C DP++VTV LEGLENILKVG AE N G   G+ N YAQ++E+A+GL+KIENLQSHD+N 
Sbjct:   428 CPDPRVVTVTLEGLENILKVGEAEKNLGNT-GNDNLYAQMIEDADGLDKIENLQSHDNNE 486

Query:   649 ISEKAVEILETYWSS 663
             I EKAV+ILE+YW++
Sbjct:   487 IYEKAVKILESYWAA 501

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
 Identities = 267/454 (58%), Positives = 327/454 (72%)

Query:   211 KKLGEFLQSQRSRISTPVLSL--N--LQSKLEILPAMVDGVWSDDNSLQLEATTLFINLL 266
             K+    ++ +R ++  P   L  N   +S LEI   M+ GV+SDD SLQLE TT F  +L
Sbjct:    40 KRNENLMKKRRVKVLPPDYKLISNDPFESLLEIAN-MITGVFSDDPSLQLEYTTRFRVVL 98

Query:   267 SFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAV 326
             SFDRSPP D VI+SGVVPRFVEFL + D P+LQF+AAWALTNIASG SE+TKVVIDHG V
Sbjct:    99 SFDRSPPTDNVIKSGVVPRFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVV 158

Query:   327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRT 386
             P+FV+LLASP  DVR+Q +W LGNVAGDS +CRD VL+ GA IP           S+LR 
Sbjct:   159 PLFVQLLASPDDDVREQAIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRN 218

Query:   387 ATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAV 446
             ATWTL NF RGKP PPF+ V+  LPVL +L+ S+DE+VL DACWALS LSD +N+ +Q+V
Sbjct:   219 ATWTLSNFFRGKPSPPFDLVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSV 278

Query:   447 IEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHE 506
             IEAGV PRLVELL H+S  VL PALR I NIV G+  QT C+INCG LP   D+L  NH 
Sbjct:   279 IEAGVVPRLVELLQHASPVVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHM 338

Query:   507 ESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566
               I++E  W ISNIT G  EQIQ+VID+ LI  +VNL Q+ EFD KKEA WAISNA+  G
Sbjct:   339 RGIRREACWTISNITAGLEEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGG 398

Query:   567 THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYA 626
             +  QIK+LV + C+K LCD+L+C D +I+ V L GLE IL  G  + N    + D N Y+
Sbjct:   399 SPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGLEMILIAGEVDKN----LRDVNCYS 454

Query:   627 QLVEEAEGLEKIENLQSHDDNGISEKAVEILETY 660
             Q++E+AEGLEKIENLQ H +N I EKAV+IL+TY
Sbjct:   455 QMIEDAEGLEKIENLQHHGNNEIYEKAVKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
 Identities = 256/434 (58%), Positives = 323/434 (74%)

Query:   233 LQSKLEI-LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLM 291
             ++S+L + LP MV GV+SD    Q++ATT F  LLS +R+PPI+ VI++GVV RFVEFL 
Sbjct:    76 IESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL- 134

Query:   292 RQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNV 351
             R  +  +QF+AAWALTNIASG+++ T+VVI+ GAVPIFV+LL+SP  DVR+Q VWALGN+
Sbjct:   135 RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNI 194

Query:   352 AGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGK-PQPPFNQVRPAL 410
             AGDSP+CRD VL+ GAL P           SMLR ATWTL NFCRGK PQP +N + PAL
Sbjct:   195 AGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPAL 254

Query:   411 PVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPA 470
             PVLA+LI   D+EVL DACWA+SYLSDG N+K+QAVIEAG+  RLVELL H+S+SV TPA
Sbjct:   255 PVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPA 314

Query:   471 LRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA 530
             LR++ NIV GDD QTQ IINCGALP  L +L  + ++ I+KE  W ISNIT GN  QIQ+
Sbjct:   315 LRSVGNIVTGDDVQTQVIINCGALPALLSLL-SSTKDGIRKEACWTISNITAGNSSQIQS 373

Query:   531 VIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH--EQIKHLVREGCVKPLCDLLL 588
             VID+G+I P+V+LL N +F T+KEA WAISNAT  G    +QI++LV +GC+KPLCDLL 
Sbjct:   374 VIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLA 433

Query:   589 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNG 648
             C D KI+ V L+GLENILKVG  +   G      N+YA  +EEA G+EKI + Q++ +  
Sbjct:   434 CPDNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEE 493

Query:   649 ISEKAVEILETYWS 662
             I  KA  I+E Y+S
Sbjct:   494 IYMKAYNIIEKYFS 507

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 254/434 (58%), Positives = 319/434 (73%)

Query:   234 QSKL-EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR 292
             +S+L E LP MV GV+S+    Q++ATT F  LLS +R+PPI+EVI++GVV RFVEFL R
Sbjct:    76 ESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-R 134

Query:   293 QDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA 352
               +  +QF+AAWALTNIASG++  T+VVI+ GAVPIFV+LL SP  DVR+Q VWALGN+A
Sbjct:   135 SPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIA 194

Query:   353 GDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGK-PQPPFNQVRPALP 411
             GDSP+CRD VLS GAL P           SMLR ATWTL NFCRGK PQP +  + PALP
Sbjct:   195 GDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALP 254

Query:   412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPAL 471
             VLA+L+ S D+EVL DACWA+SYLSDG+NDK+QAVIEAG+  RLVELL H+S+SV TPAL
Sbjct:   255 VLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPAL 314

Query:   472 RTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV 531
             R++ NIV GDD QTQ IINCGALP  L +L  N ++ I+KE  W ISNIT GN  QIQ+V
Sbjct:   315 RSVGNIVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQSV 373

Query:   532 IDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH--EQIKHLVREGCVKPLCDLLLC 589
             +D+ +I P+++LL N +  T+KEA WAISNAT  G    +QI++LV +GC+KPLCDLL C
Sbjct:   374 VDANIIPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSC 433

Query:   590 ADPKIVTVCLEGLENILKVG-VAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNG 648
              D KI+ V L+GLENILKVG + +   G      N+YA  +EE  G+EKI   Q++ +  
Sbjct:   434 PDNKIIQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEE 493

Query:   649 ISEKAVEILETYWS 662
             I  KA  I+E Y+S
Sbjct:   494 IYMKAFNIIEKYFS 507

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
 Identities = 247/439 (56%), Positives = 317/439 (72%)

Query:   225 STPV-LSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV 283
             STPV +   +  +LE LP++V  + S++  L L++TT F  LLS ++SPPI+EVI++G+V
Sbjct:    53 STPVKVDSLINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIV 112

Query:   284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQ 343
             PR V+FL  QD+PQLQF+AAWALTNIASGT E T+VVI++GA+ +FV LL+SP  DVR+Q
Sbjct:   113 PRLVKFLYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQ 172

Query:   344 TVWALGNVAGDSPRCRDLVLSQGALIPXXXXXX--XXXXXSMLRTATWTLFNFCRGKPQP 401
              VWALGN+AGDS  CRDLVLS  AL P             SM+R ATWTL NFCRGKPQP
Sbjct:   173 AVWALGNIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQP 232

Query:   402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH 461
             PF  VR +LPVLA+LI   DEEVL DACWALSYLSDG+N+++Q VI+A V  ++VELLGH
Sbjct:   233 PFEIVRASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGH 292

Query:   462 SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521
              + +V TPALRTI NIV GDD QTQ +++  AL + L++L  + + +I+KE  W ISNIT
Sbjct:   293 PTIAVQTPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNIT 351

Query:   522 CGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVK 581
              G++ QIQ VID+ +I  +V LL N EF+ +KEAAWAISNAT  GT +QI  LV +GCVK
Sbjct:   352 AGDKNQIQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVK 411

Query:   582 PLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENL 641
             PLCDLL  +DP+I+ V LEG+ENIL  G  E    T V   N Y +++E+A+GL KI +L
Sbjct:   412 PLCDLLKVSDPRIINVALEGIENILVAGKKEAQV-TGV---NPYKKIIEDADGLGKIYDL 467

Query:   642 QSHDDNGISEKAVEILETY 660
             Q H +    EK   I+ TY
Sbjct:   468 QHHMNKDTFEKVSRIISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 247/427 (57%), Positives = 308/427 (72%)

Query:   243 MVDGVWSDDNSLQLEATTLFINLLSFDR-SPPIDEVIQSGVVPRFVEFLMRQDYPQLQFK 301
             ++  +WSD+  L +EATT    LL  +  +  ++EVIQ+G+VPRFVEFL   D PQLQF+
Sbjct:    64 LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFE 123

Query:   302 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361
             AAWALTNIASGTSENT+VVIDHGAV I V+LL SP   VR+Q VWALGN++GDSPRCRD+
Sbjct:   124 AAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDI 183

Query:   362 VLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSND 421
             VL   AL             SML  A WTL N CRGKPQPPF+QV  ALP LAQLIR +D
Sbjct:   184 VLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDD 243

Query:   422 EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD 481
             +E+L   CWAL YLSDG+N+K+QAVIEA V  RL+ L  H S SV+TPALRTI NIV G+
Sbjct:   244 KELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGN 303

Query:   482 DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIV 541
             D QTQ II+  ALP  +++L  ++ ++I+KE  W +SNIT G + QIQAV D+ +   +V
Sbjct:   304 DSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALV 363

Query:   542 NLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEG 601
             NLLQN+E D KKEAAWAI NA   G+++QI  LV++ C+KPLCDLL C+D ++V VCLE 
Sbjct:   364 NLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEA 423

Query:   602 LENILKVGVAEMNTGTAVGDF-------NQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
             L+ ILKVG    ++  A G +       N +AQL+EEAEGLEKIE LQSH++N I E AV
Sbjct:   424 LKKILKVGEV-FSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAV 482

Query:   655 EILETYW 661
             +ILETYW
Sbjct:   483 KILETYW 489

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5781	0.6194	0.7742	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5758	0.6194	0.7742	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5550	0.6208	0.7675	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5433	0.6253	0.7773	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5717	0.6432	0.8352	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7035	0.6716	0.8538	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5758	0.6194	0.7742	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5781	0.6194	0.7742	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7300	0.6686	0.8517	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	670
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-177
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-26
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-24
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-20
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-19
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-17
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-08
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	6e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.002

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  514 bits (1324), Expect = e-177
 Identities = 239/457 (52%), Positives = 307/457 (67%), Gaps = 9/457 (1%)

Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           L K            S+ +  +  Q   E LP +   ++SDD   QL+A   F  LLS +
Sbjct: 45  LNKRRNLADVSEEAESSFI-PMEQQFYSE-LPQLTQQLFSDDIEQQLQAVYKFRKLLSKE 102

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
            SPPI  VI +GVVPRFVEF+       LQF+AAWALTNIASGT++ TKVV+D GAVP+F
Sbjct: 103 TSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF 162

Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA-NLSMLRTAT 388
           ++LL+S   DVR+Q VWALGN+AGDS  CRD VL  GAL PLL  L  +A ++SMLR AT
Sbjct: 163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT 222

Query: 389 WTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI 447
           WTL N CRGK P P ++ +  ALP+LA+LI S D EVL DACWA+SYLSDG N+K+QAV+
Sbjct: 223 WTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVL 282

Query: 448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE 507
           + G+  RLVELL H S+ + TPALR++ NIV G D QTQ IINCGAL  F  +L  + +E
Sbjct: 283 DVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLL-SSPKE 341

Query: 508 SIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT 567
           +I+KE  W ISNIT GN EQIQAVID+ LI P+++LL + E+  KKEA WAISNAT  G 
Sbjct: 342 NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401

Query: 568 H--EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQY 625
           +  + I++LV +G +KPLCDLL   D KI+ V L+ +ENILKVG  E +      + N Y
Sbjct: 402 NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG--EQDRLRYGKNINIY 459

Query: 626 AQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWS 662
           A  VE+A G++ I  LQ   +  I +KA  I+E ++ 
Sbjct: 460 AVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG 496

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  117 bits (295), Expect = 3e-31
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 275 DEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 334
           + VIQ+G +P  V  L   D   +Q +AAWAL+N+++G ++N + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 335 SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394
           S   +V K  +WAL N+A      + +VL  G  +P L  L +++N  + + AT  L N 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 395 CR 396
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  104 bits (262), Expect = 1e-26
 Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 1/113 (0%)

Query: 409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
            LP L  L+ S+DE V  +A WALS LS G ND +QAV+EAG  P LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521
            AL  +RN+  G +     ++  G +P  +++L  ++E+ I+K  +  +SN+ 
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNED-IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 97.0 bits (242), Expect = 6e-24
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 444 QAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH 503
           +AVI+AG  P LV LL  S  +V   A   + N+  G++   Q ++  G LP  + +L  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 504 NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN 561
             EE + K   W + N+  G  +    V+++G +  +VNLL ++  D +K A  A+SN
Sbjct: 61  EDEE-VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSN 117

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.8 bits (218), Expect = 9e-21
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 236 KLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDY 295
           +   LPA+V  + S D ++Q EA     NL S   +  I  V+++G +P  V+ L  +D 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED- 62

Query: 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA 352
            ++   A WAL N+A+G  +N  +V++ G VP  V LL S + D++K    AL N+A
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 85.8 bits (213), Expect = 5e-20
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 14/134 (10%)

Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588
           +AVI +G +  +V+LL +++ + ++EAAWA+SN +  G ++ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLS-AGNNDNIQAVVEAGGLPALVQLLK 59

Query: 589 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNG 648
             D ++V   L  L N+                      +V EA G+ K+ NL    +  
Sbjct: 60  SEDEEVVKAALWALRNLAAGP-------------EDNKLIVLEAGGVPKLVNLLDSSNED 106

Query: 649 ISEKAVEILETYWS 662
           I + A   L    S
Sbjct: 107 IQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 488 IINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT 547
           +I  G LP  + +L  + E  +++E +W +SN++ GN + IQAV+++G +  +V LL++ 
Sbjct: 3   VIQAGGLPALVSLLSSSDEN-VQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 548 EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605
           + +  K A WA+ N    G  +    ++  G V  L +LL  ++  I       L N+
Sbjct: 62  DEEVVKAALWALRNLA-AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPA--LPVLAQLIRSNDEEVL 425
            +P L  L  +++ ++ R A W L N   G        V  A  LP L QL++S DEEV+
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKSEDEEVV 66

Query: 426 TDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIV 478
             A WAL  L+ G  D    V+EAG  P+LV LL  S+  +   A   + N+ 
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA 352
             EN + V+D G +P  V+LL S   +V K+  WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 51.7 bits (125), Expect = 6e-09
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA 352
           + EN + VI+ GAVP  V+LL+SP  +V+++  WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 17/38 (44%), Positives = 28/38 (73%)

Query: 524 NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN 561
           + E  QAVI++G + P+V LL + + + ++EAAWA+SN
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSN 38

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNV 351
            +++  AA AL  +A G  E  +  +    +P  + LL     +VR+   WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311
                  V+ +G +P  VE L++ +  ++  +AAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 45.5 bits (109), Expect = 9e-07
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 271 SPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311
                 VI++G VP  V+ L   D  ++Q +AAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 439 TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIV 478
           + +  QAVIEAG  P LV+LL      V   A   + N+ 
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 524 NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN 561
           + E  QAV+D+G +  +V LL++ + +  KEAAWA+SN
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSN 38

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 43.2 bits (103), Expect = 5e-06
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 409 ALPVLAQLIRSNDEEVLTDACWALSYLSD 437
           A+P L QL+ S DEEV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 439 TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479
            ++  QAV++AG  P LVELL      V+  A   + N+  
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 567 THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605
             E  + +V  G +  L +LL   D ++V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 567 THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605
           + E  + ++  G V PL  LL   D ++       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 22/109 (20%)

Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
           +   +E L+    P+++  AA AL  +            D  A+P  ++LL  P  +VR+
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTL 391
               ALG +               AL  LL  L ++ +  +   A   L
Sbjct: 50  AAAEALGKLGDPE-----------ALPALLELLQDDDDAVVRAAAASAL 87

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 409 ALPVLAQLIRSNDEEVLTDACWALSYLSD 437
            LP L +L++S DEEV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 484 QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521
             Q +I  GA+P  + +L    EE +++E +W +SN+ 
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPDEE-VQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521
           DD   Q +++ G LP  +++L    EE + KE +W +SN++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	670
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.84
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.83
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.78
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.75
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.73
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.72
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.69
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.69
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.69
PRK09687	280	putative lyase; Provisional	99.68
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.68
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.67
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.65
PRK09687	280	putative lyase; Provisional	99.64
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.61
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.59
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.56
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.56
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.55
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.52
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.49
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.43
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.42
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.42
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.41
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.41
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.37
PTZ00429	746	beta-adaptin; Provisional	99.37
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.36
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.34
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.32
PTZ00429	746	beta-adaptin; Provisional	99.3
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.29
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.28
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.26
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.22
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.19
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.15
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.11
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.09
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.07
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	99.04
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.98
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.97
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.93
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.9
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.86
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.86
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.85
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.85
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.84
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.84
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.83
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.79
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.78
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.77
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.74
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.74
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.72
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.71
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.7
COG5369	743	Uncharacterized conserved protein [Function unknow	98.7
TIGR02270	410	conserved hypothetical protein. Members are found	98.66
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.65
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.65
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.64
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.62
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.59
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.56
TIGR02270	410	conserved hypothetical protein. Members are found	98.56
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.55
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.52
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.51
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.5
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.49
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.48
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.48
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.48
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.47
PRK15386	426	type III secretion protein GogB; Provisional	98.47
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.44
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.41
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.38
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.38
PF05536	543	Neurochondrin: Neurochondrin	98.37
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.35
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.31
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.25
COG5369	743	Uncharacterized conserved protein [Function unknow	98.21
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.17
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.17
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.14
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.14
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.14
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.09
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.08
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.07
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.07
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.07
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.06
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.04
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.94
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.93
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.93
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.93
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.93
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.93
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.86
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.86
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.86
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.85
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.85
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.85
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.82
PF05536	543	Neurochondrin: Neurochondrin	97.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.78
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.77
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.75
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.75
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.75
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.69
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.68
KOG0567	289	consensus HEAT repeat-containing protein [General	97.67
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.65
KOG0567	289	consensus HEAT repeat-containing protein [General	97.61
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.6
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.6
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.57
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.57
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.54
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.53
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.51
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.5
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.41
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.39
KOG4341	483	consensus F-box protein containing LRR [General fu	97.38
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.38
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.34
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.25
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.22
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.21
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.21
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.2
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.19
KOG2025	892	consensus Chromosome condensation complex Condensi	97.16
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.15
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.14
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.13
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.11
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.1
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.05
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.04
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.03
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.02
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.99
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.99
PF05004	309	IFRD: Interferon-related developmental regulator (	96.98
PF05004	309	IFRD: Interferon-related developmental regulator (	96.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.92
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.91
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.9
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.88
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.88
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.85
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.77
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.69
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.64
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.63
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.61
KOG4341	483	consensus F-box protein containing LRR [General fu	96.59
PRK14707	2710	hypothetical protein; Provisional	96.59
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.58
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.58
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.56
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.54
PRK14707	2710	hypothetical protein; Provisional	96.49
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.39
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.36
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.36
KOG3036	293	consensus Protein involved in cell differentiation	96.36
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.32
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.3
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.27
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.21
KOG3036	293	consensus Protein involved in cell differentiation	96.21
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.19
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.17
KOG1243	690	consensus Protein kinase [General function predict	96.13
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.1
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.08
KOG2956	516	consensus CLIP-associating protein [General functi	96.03
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.01
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.0
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.87
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.75
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.66
KOG2956	516	consensus CLIP-associating protein [General functi	95.64
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.6
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.55
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.44
KOG2025	892	consensus Chromosome condensation complex Condensi	95.37
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.34
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.33
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	95.17
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.1
KOG1243	690	consensus Protein kinase [General function predict	95.06
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.05
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.04
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	94.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.93
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.93
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.92
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.86
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.79
KOG0413	1529	consensus Uncharacterized conserved protein relate	94.72
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.67
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.57
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.42
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.3
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.19
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	93.97
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	93.93
PLN03150	623	hypothetical protein; Provisional	93.91
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.78
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	93.71
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	93.66
COG5098	1128	Chromosome condensation complex Condensin, subunit	93.51
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.49
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.31
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.29
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.16
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.13
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	92.98
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.9
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.88
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	92.87
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.85
COG5656	970	SXM1 Importin, protein involved in nuclear import	92.83
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	92.78
PLN03150	623	hypothetical protein; Provisional	92.78
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.43
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.28
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	92.22
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	92.12
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	92.04
KOG2137	700	consensus Protein kinase [Signal transduction mech	91.91
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.89
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.76
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	91.71
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	91.64
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.61
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.59
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	91.45
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	91.31
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.27
KOG2933	334	consensus Uncharacterized conserved protein [Funct	91.26
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.17
KOG0472	565	consensus Leucine-rich repeat protein [Function un	91.15
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	91.09
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.02
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	91.0
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	90.89
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	90.83
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	90.77
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	90.75
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.74
KOG2137	700	consensus Protein kinase [Signal transduction mech	90.7
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.68
KOG2933	334	consensus Uncharacterized conserved protein [Funct	90.61
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.56
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	90.27
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	90.18
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	89.89
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	89.54
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	89.52
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	89.19
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	88.69
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	88.61
KOG0472	565	consensus Leucine-rich repeat protein [Function un	88.61
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	88.21
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	88.08
COG5098	1128	Chromosome condensation complex Condensin, subunit	88.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	87.97
KOG2005	878	consensus 26S proteasome regulatory complex, subun	87.81
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	87.69
cd03561	133	VHS VHS domain family; The VHS domain is present i	87.54
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	87.52
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	87.04
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	86.9
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	86.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	86.24
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	86.17
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.04
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	85.7
KOG0413	1529	consensus Uncharacterized conserved protein relate	85.33
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.02
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	84.88
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	84.64
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.4
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.2
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.96
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	83.65
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	83.63
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	81.85
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	81.62
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	81.47
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	81.36
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	81.09
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	81.04
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	80.95
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	80.91
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	80.42
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	80.31
cd03561	133	VHS VHS domain family; The VHS domain is present i	80.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	80.01

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-56  Score=441.75  Aligned_cols=423  Identities=66%  Similarity=1.006  Sum_probs=402.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV  319 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  319 (670)
                      .+.+++.+.+++++.+..+...++++.+.+..++++.++..|++|.+++++...+++.++..|+|+|+|++.++.+..+.
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            78888999999999999999999999998878889999999999999999987666999999999999999999999999


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC-
Q 037562          320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-  398 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-  398 (670)
                      ++++|++|.|+.++.+++..++++|+|+|+|++.+++.+|+.+++.|++++|+.++.......+.+++.|+|+|+|++. 
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999966655688999999999999998 


Q ss_pred             CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhh
Q 037562          399 PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIV  478 (670)
Q Consensus       399 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  478 (670)
                      |.+.+..+..++|.|..++.+.|++|...|+|++++++++..+.++.+++.|+++.++.+|.+.+..++..|+++++|++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHH
Q 037562          479 KGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWA  558 (670)
Q Consensus       479 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  558 (670)
                      .+++.+++.+++.|+++.|..++...+...++++|+|+++|+++++.++++.+++.|++|.|+.++++++.++|++|+||
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999965477799999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHH
Q 037562          559 ISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKI  638 (670)
Q Consensus       559 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l  638 (670)
                      ++|++..|++++..++++.|+|++++++|...|.++...++.+++++++.++.....    .. +.+..+++++||++.+
T Consensus       388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~~~~IEe~ggldki  462 (514)
T KOG0166|consen  388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPLAIMIEEAGGLDKI  462 (514)
T ss_pred             HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHHHHHHHHccChhHH
Confidence            999999999999999999999999999999999999999999999999999887632    11 7899999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562          639 ENLQSHDDNGISEKAVEILETYWSSRVIG  667 (670)
Q Consensus       639 ~~L~~~~~~~v~~~a~~~l~~~~~~~~~~  667 (670)
                      +.|+.|+++++++.|.++|++||++|+.+
T Consensus       463 E~LQ~hen~~Iy~~A~~II~~yf~~e~~~  491 (514)
T KOG0166|consen  463 ENLQSHENEEIYKKAYKIIDTYFSEEDDE  491 (514)
T ss_pred             HHhhccccHHHHHHHHHHHHHhcCCCccc
Confidence            99999999999999999999999987544

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1e-55  Score=400.79  Aligned_cols=427  Identities=55%  Similarity=0.855  Sum_probs=398.8

Q ss_pred             hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      ...+|.+.+.+.++|-+.+.+|...++++.+.+..++++.+++.|++|.++++++.....-.+..|+|+|+|++.+....
T Consensus        70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q  149 (526)
T COG5064          70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ  149 (526)
T ss_pred             hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence            35689999999999999999999999999999889999999999999999999965543678999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC-ChhHHHHHHHHHHhhh
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA-NLSMLRTATWTLFNFC  395 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~-~~~~~~~a~~~L~~l~  395 (670)
                      .+.++++|++|.++++|.+++.+++++++|+|+|++.+++.+|+.+++.|++.+++.++..+. +..+.+++.|+|+|+|
T Consensus       150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc  229 (526)
T COG5064         150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC  229 (526)
T ss_pred             eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999996543 3588999999999999


Q ss_pred             cCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562          396 RGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI  474 (670)
Q Consensus       396 ~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L  474 (670)
                      ++. |.+....++..+|.|.+++.+.|+++...|+|+++.+++.+.+..+.+++.|....|+.+|.+++..++..|++.+
T Consensus       230 RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v  309 (526)
T COG5064         230 RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV  309 (526)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence            987 7777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHH
Q 037562          475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKE  554 (670)
Q Consensus       475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  554 (670)
                      +|+..+++.+.+.+++.|+++.+..+|.++ ...+|++|||+++|+++++.++++.+++.+++|.|+.++...+..++++
T Consensus       310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE  388 (526)
T COG5064         310 GNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE  388 (526)
T ss_pred             cCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC--CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh
Q 037562          555 AAWAISNATKFG--THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA  632 (670)
Q Consensus       555 a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (670)
                      ||||+.|...++  .|+..++++++|+|.+|+++|+-.+..+...++.++.+++..++.....-.  .+.|.+...++++
T Consensus       389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~A  466 (526)
T COG5064         389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKA  466 (526)
T ss_pred             HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhc
Confidence            999999999875  678999999999999999999999999999999999999998877654322  3567789999999


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHhcCCccc
Q 037562          633 EGLEKIENLQSHDDNGISEKAVEILETYWSSRVI  666 (670)
Q Consensus       633 g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~  666 (670)
                      ||++.+..++++.+.+++.+|..+|++||++|+.
T Consensus       467 ggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~  500 (526)
T COG5064         467 GGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA  500 (526)
T ss_pred             ccHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence            9999999999999999999999999999987753

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-42  Score=338.47  Aligned_cols=389  Identities=25%  Similarity=0.390  Sum_probs=341.6

Q ss_pred             hhccccCCCccccchhhhhh--ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC
Q 037562          218 QSQRSRISTPVLSLNLQSKL--EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD  294 (670)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~  294 (670)
                      +..|...+...+ +|++..+  |.+|.+++.+. .+++.++++|+|+|.+++++. ++..+.+++.|++|.++.++.+++
T Consensus        88 ~~~rkllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~  165 (514)
T KOG0166|consen   88 QAFRKLLSKERN-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS  165 (514)
T ss_pred             HHHHHHHccCCC-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc
Confidence            344444455555 4666655  78999999997 566999999999999999987 778889999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHH
Q 037562          295 YPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSV-DVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLA  373 (670)
Q Consensus       295 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~  373 (670)
                       .+++++|+|+|+|++.+++.+|+.+++.|++++|+.++..++. .+..++.|+|.|+|.+.......-.-..+++.|..
T Consensus       166 -~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~  244 (514)
T KOG0166|consen  166 -ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR  244 (514)
T ss_pred             -HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence             8999999999999999999999999999999999999988665 78889999999999765221222222236888888


Q ss_pred             HhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCH
Q 037562          374 ELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVY  452 (670)
Q Consensus       374 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i  452 (670)
                      ++ .+.|+++...|+|++++++.+.+.. ......|++|.|+.+|.+.+..++..|+++++|++.+++.+.+.+++.|++
T Consensus       245 ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L  323 (514)
T KOG0166|consen  245 LL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGAL  323 (514)
T ss_pred             HH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChH
Confidence            88 8899999999999999999887444 444458999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC-CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHH
Q 037562          453 PRLVELLG-HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQA  530 (670)
Q Consensus       453 ~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~  530 (670)
                      +.+..++. ++...++.+|+|+|+|++.++..+++.++++|++|.|+.+++.. +..+|++|+|+++|++. ++++++.+
T Consensus       324 ~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~y  402 (514)
T KOG0166|consen  324 PVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKY  402 (514)
T ss_pred             HHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHH
Confidence            99999999 56666999999999999999999999999999999999999999 99999999999999988 68999999


Q ss_pred             HHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-------HHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHH
Q 037562          531 VIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT-------HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE  603 (670)
Q Consensus       531 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~  603 (670)
                      +++.|+++.+.++|...|.++...+..++.++...+.       ......+-+.|+++.+..+-.+++.++...|...+.
T Consensus       403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~  482 (514)
T KOG0166|consen  403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID  482 (514)
T ss_pred             HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence            9999999999999998999999999999999977542       334556678999999999999999999999999999


Q ss_pred             HHHHhhhh
Q 037562          604 NILKVGVA  611 (670)
Q Consensus       604 ~l~~~~~~  611 (670)
                      ++|..++.
T Consensus       483 ~yf~~e~~  490 (514)
T KOG0166|consen  483 TYFSEEDD  490 (514)
T ss_pred             HhcCCCcc
Confidence            99876533

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.1e-41  Score=309.45  Aligned_cols=383  Identities=23%  Similarity=0.331  Sum_probs=331.9

Q ss_pred             cccCCCccccchhhhhh--ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHH
Q 037562          221 RSRISTPVLSLNLQSKL--EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ  297 (670)
Q Consensus       221 ~~~~~~~~~~~~~~~~~--~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~  297 (670)
                      |+..+.+.+ +|++..+  |.+|.+++++. .+..-.+++|+|+|.|++++. ..+.+.+++.|++|.++++|.+++ .+
T Consensus        96 R~~LS~E~~-PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~  172 (526)
T COG5064          96 RKLLSKETS-PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DD  172 (526)
T ss_pred             HHHhccccC-CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HH
Confidence            444455544 4777776  66999999995 566678999999999999987 677788899999999999999999 89


Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 037562          298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP--SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL  375 (670)
Q Consensus       298 v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l  375 (670)
                      |+++++|+|+|++.+++.+|+.+++.|++++++.++.+.  +..+...+.|+|+|+|.+.....+.-.-..++|.|.+++
T Consensus       173 V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi  252 (526)
T COG5064         173 VREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI  252 (526)
T ss_pred             HHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998774  458889999999999964322111111122588888888


Q ss_pred             cccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHH
Q 037562          376 NENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPR  454 (670)
Q Consensus       376 ~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~  454 (670)
                       ...|+++...|+|++++++...... ......|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.+++.|+++.
T Consensus       253 -ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a  331 (526)
T COG5064         253 -YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKA  331 (526)
T ss_pred             -hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHH
Confidence             8889999999999999999986333 33344788899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc---CCHHHHHHH
Q 037562          455 LVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC---GNREQIQAV  531 (670)
Q Consensus       455 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l  531 (670)
                      +-.+|+++...+|+.|||+++|++.++.++++.+++.+++|+|+.+|.+. +..++++|||++.|...   ..|+.++++
T Consensus       332 ~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryL  410 (526)
T COG5064         332 FRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYL  410 (526)
T ss_pred             HHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999 99999999999999987   468899999


Q ss_pred             HhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----------HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHH
Q 037562          532 IDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH----------EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEG  601 (670)
Q Consensus       532 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~  601 (670)
                      ++.|++..|.++|.-.+..+.+.++.++.++...|..          .+..++-+.|+++.+..+-++.+..+..+|-.+
T Consensus       411 v~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsI  490 (526)
T COG5064         411 VSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSI  490 (526)
T ss_pred             HHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHH
Confidence            9999999999999988888888889999998876522          334455569999999999999999999999999


Q ss_pred             HHHHHHh
Q 037562          602 LENILKV  608 (670)
Q Consensus       602 l~~l~~~  608 (670)
                      +..+|..
T Consensus       491 Ie~fFge  497 (526)
T COG5064         491 IEKFFGE  497 (526)
T ss_pred             HHHHccc
Confidence            9888743

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=7.5e-37  Score=346.41  Aligned_cols=439  Identities=18%  Similarity=0.215  Sum_probs=352.0

Q ss_pred             hhHHHHhhcchhhhhhccccCCC-ccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC
Q 037562          204 TIKYLYLKKLGEFLQSQRSRIST-PVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGV  282 (670)
Q Consensus       204 ~i~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~  282 (670)
                      .++..+...+.+++...+..... ...        |++|.+++.+.++++..+..|+++|.+++... .+....+++.|+
T Consensus       162 ~L~~~Av~AL~nLs~~~en~~~~IIea--------GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGa  232 (2102)
T PLN03200        162 VVEGLLTGALRNLCGSTDGFWSATLEA--------GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGA  232 (2102)
T ss_pred             HHHHHHHHHHHHHhcCccchHHHHHHc--------CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCC
Confidence            45666667777787776655332 222        67999999999999999999999998887664 457888999999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhC
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS---------VDVRKQTVWALGNVAG  353 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~---------~~v~~~a~~~L~~l~~  353 (670)
                      +|.|++++++++.+.+|+.|+++|++++.++++.++.+++.|+++.|++++..++         ..++++|+|+|+|+|.
T Consensus       233 VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg  312 (2102)
T PLN03200        233 VKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG  312 (2102)
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence            9999999987553799999999999999999999999999999999999998655         3468999999999997


Q ss_pred             CCch-----------hHH--------------------------------------------------------------
Q 037562          354 DSPR-----------CRD--------------------------------------------------------------  360 (670)
Q Consensus       354 ~~~~-----------~~~--------------------------------------------------------------  360 (670)
                      +.+.           .++                                                              
T Consensus       313 g~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~g  392 (2102)
T PLN03200        313 GMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYG  392 (2102)
T ss_pred             CchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcC
Confidence            5222           100                                                              


Q ss_pred             ------HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC-CChhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 037562          361 ------LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ-PPFNQVRPALPVLAQLIRSNDEEVLTDACWALS  433 (670)
Q Consensus       361 ------~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~  433 (670)
                            .+.+.++++.|+.++ ...+.+++..++|+|++++.++.. .......+++|.|+++|.+++..++..++++++
T Consensus       393 N~~l~~~L~~~daik~LV~LL-~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~  471 (2102)
T PLN03200        393 NAYLSRKLNHAEAKKVLVGLI-TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLA  471 (2102)
T ss_pred             ChHHHHHHHhccchhhhhhhh-ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                  000112222223333 234467888999999999987533 344455889999999999999999999999999


Q ss_pred             HhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHH
Q 037562          434 YLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEV  513 (670)
Q Consensus       434 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a  513 (670)
                      +++..++++...+.+.|+++.|+.+|.+++..+++.|+|+|+|++.+.++....+.+.|+++.|+++|+++ ++++++.|
T Consensus       472 nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~A  550 (2102)
T PLN03200        472 ILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIA  550 (2102)
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHH
Confidence            99988888888899999999999999999999999999999999986544444344667777777777666 66666666


Q ss_pred             HHHHHHh-------------------------------------------------------------------------
Q 037562          514 SWIISNI-------------------------------------------------------------------------  520 (670)
Q Consensus       514 ~~~L~~l-------------------------------------------------------------------------  520 (670)
                      +|+|.++                                                                         
T Consensus       551 a~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa  630 (2102)
T PLN03200        551 AKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAA  630 (2102)
T ss_pred             HHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHH
Confidence            6666665                                                                         


Q ss_pred             ------hcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHH
Q 037562          521 ------TCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKI  594 (670)
Q Consensus       521 ------~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  594 (670)
                            +.+.+++...++..|+++.++.++.+++.+++++|+++|.+++..+...+...+++.|++++|++++++.+.++
T Consensus       631 ~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v  710 (2102)
T PLN03200        631 SVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEV  710 (2102)
T ss_pred             HHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence                  33334445556677888889998888888999999999999998878788888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562          595 VTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRVIG  667 (670)
Q Consensus       595 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~  667 (670)
                      +..++.+|.+++..++.              +..+.+.|+++.|..++.+.+++.++.|.++|.++.....++
T Consensus       711 ~e~Al~ALanLl~~~e~--------------~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~  769 (2102)
T PLN03200        711 AEQAVCALANLLSDPEV--------------AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD  769 (2102)
T ss_pred             HHHHHHHHHHHHcCchH--------------HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence            99999999999987664              344568899999999999999999999999998887555443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=336.67  Aligned_cols=416  Identities=19%  Similarity=0.200  Sum_probs=367.7

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ++++.|+.++...+.++|.+++++|..++.++ .+.++.+.+.|+++.|+++|.+++ ..+|..|++++++++.++++.+
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            67899999999999999999999999998765 677889999999999999999998 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+++| ++.+...+..|+|+|.+++..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998878888888899999999999 667889999999999999743


Q ss_pred             CCCCC-----------------------------------h---hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562          398 KPQPP-----------------------------------F---NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       398 ~~~~~-----------------------------------~---~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                      .....                                   .   ....++++.|+.+++++++.+++.|+++|.+++...
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            21110                                   0   012478999999999999999999999999999998


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD-FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS  518 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~  518 (670)
                      .+..+.++..|+++.++.+|++++.+++..|+++|++++.+.. .+...+++.|++++|++++++. +..++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999997544 3445678999999999999998 9999999999999


Q ss_pred             HhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH--HHHHHHcCCcHHHHhhccCCChHHHH
Q 037562          519 NITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIVT  596 (670)
Q Consensus       519 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~v~~  596 (670)
                      |++.. ++....+.+.|+++.|++++++++++.|++|+++|.+++..++.+.  ..++...|.+.+|+++|+..|.+...
T Consensus       720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~  798 (2102)
T PLN03200        720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA  798 (2102)
T ss_pred             HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence            99876 4456777888999999999999999999999999999998865443  36667899999999999999888776


Q ss_pred             H--HHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCc
Q 037562          597 V--CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSR  664 (670)
Q Consensus       597 ~--a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~  664 (670)
                      .  ++.++..+.+..+....      ..+++..+++..++++.|.....+.+|.++++|+++|+++.++.
T Consensus       799 ~~~al~~l~~l~~~~~~~~~------~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        799 TSEALEALALLARTKGGANF------SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             HHHHHHHHHHHHhhcccCCC------CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            6  89999999886555443      34568889999999999977779999999999999999997653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-31  Score=246.32  Aligned_cols=402  Identities=19%  Similarity=0.215  Sum_probs=344.3

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV  319 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  319 (670)
                      +..+...+++.++.++..|..++.+++-.  .++.-.+++.+++..|+.-+..+. .++|..++.|+.+++. .++++..
T Consensus        87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~k  162 (550)
T KOG4224|consen   87 NEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKVK  162 (550)
T ss_pred             hhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchhh
Confidence            46677788999999999999999999776  566666777888888877776666 5999999999999998 5888999


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC
Q 037562          320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP  399 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~  399 (670)
                      +...|++.++.++-++.+..++.++..+|.|++ +..+.|+.++..|++|.|+.++ +..+++++..++.+++|+.-...
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~  240 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRR  240 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHH
Confidence            999999999999889999999999999999998 4456788899999999999999 88999999999999999998765


Q ss_pred             CCChhhhhh--hHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          400 QPPFNQVRP--ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       400 ~~~~~~~~~--~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                      .+......+  .+|.|+.++.++++.++-.|..+|++++... .+...+.+.|.+|.++.+++++..........|+.|+
T Consensus       241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni  319 (550)
T KOG4224|consen  241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI  319 (550)
T ss_pred             HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc
Confidence            555555544  9999999999999999999999999999654 4556699999999999999999988899999999999


Q ss_pred             hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562          478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAW  557 (670)
Q Consensus       478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  557 (670)
                      +-+.- ..-.++++|++.+|+.+|..+++.+++-.|..+|.|++..+..+...+.+.|.+|.++.++.++...++.+...
T Consensus       320 sihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa  398 (550)
T KOG4224|consen  320 SIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA  398 (550)
T ss_pred             ccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence            97543 34447899999999999999867779999999999999988889999999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh-----
Q 037562          558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA-----  632 (670)
Q Consensus       558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  632 (670)
                      ++..++..  ......+.+.|.++.|+.+..+.+.+++.++..+|.++...-+.             |...++.-     
T Consensus       399 c~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-------------YarviEawd~P~~  463 (550)
T KOG4224|consen  399 CIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-------------YARVIEAWDHPVQ  463 (550)
T ss_pred             HHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-------------HHHHHHHhcCcch
Confidence            99999984  46778899999999999999999999999999999998855333             44444321     


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHhcCCc
Q 037562          633 EGLEKIENLQSHDDNGISEKAVEILETYWSSR  664 (670)
Q Consensus       633 g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~  664 (670)
                      |.-..|..+..+....++..+.|.|..+...-
T Consensus       464 gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  464 GIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            22334666677777788888888888776443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.8e-30  Score=234.97  Aligned_cols=361  Identities=21%  Similarity=0.296  Sum_probs=318.1

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      .++..++..+..+...+|..|..++.+++..  .+....+...|++.++.++-++.+ ..+|.++..+|.++.. ..++|
T Consensus       126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~EnR  201 (550)
T KOG4224|consen  126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRENR  201 (550)
T ss_pred             cChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhhh
Confidence            5577777777788889999999999999887  677788899999999999878888 7999999999999997 89999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNENANLSMLRTATWTLFNFC  395 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  395 (670)
                      +.++.+|++|.|+.++++.+.++++.|..+++|++.+. ..|+.+.+.+  .++.|+.++ ++.++.++-.|..+|.|++
T Consensus       202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~-~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnla  279 (550)
T KOG4224|consen  202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR-RARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLA  279 (550)
T ss_pred             hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH-HHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999998654 4678888887  899999999 8888999999999999999


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc-cchhHHHHHH
Q 037562          396 RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS-SVLTPALRTI  474 (670)
Q Consensus       396 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L  474 (670)
                      ............|.+|.++++++++..........|+.|++.++- +...+.+.|++..++.+|..++. +++..|..+|
T Consensus       280 sdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstL  358 (550)
T KOG4224|consen  280 SDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL  358 (550)
T ss_pred             ccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence            988777777789999999999999988888888899999997644 44558889999999999998654 5999999999


Q ss_pred             HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHH
Q 037562          475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKE  554 (670)
Q Consensus       475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  554 (670)
                      +|++.........++++|.++.+..++.++ ..++|++...+++.++.. +.....+.+.|+++.|+.+..+.+.+++.+
T Consensus       359 rnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gN  436 (550)
T KOG4224|consen  359 RNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGN  436 (550)
T ss_pred             HHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhccc
Confidence            999997778888899999999999999999 889999999999998664 455678899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHH------cCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          555 AAWAISNATKFGTHEQIKHLVR------EGCVKPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       555 a~~aL~~l~~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      |+.||.|++.  +.+....+++      .|.-..|.+++.+.+..+++.+.|.+..++...
T Consensus       437 aAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  437 AAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             HHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            9999999998  4455555554      455667889999999999999999999888654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=1.9e-23  Score=219.87  Aligned_cols=381  Identities=21%  Similarity=0.213  Sum_probs=319.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 037562          251 DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV  330 (670)
Q Consensus       251 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~  330 (670)
                      ...+...|...|.|++.+  ......+...|+++.|+++|++++ .++...++.+|.+++- ..+++..+.+.|+++.|.
T Consensus       262 QeqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~  337 (708)
T PF05804_consen  262 QEQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLL  337 (708)
T ss_pred             HHHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHH
Confidence            345666888889999876  566778899999999999999988 8999999999999998 788999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhH
Q 037562          331 KLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPAL  410 (670)
Q Consensus       331 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i  410 (670)
                      +++.+++.+++..++++|.|++.+ +..|..+.+.|.+|.|+.++.+   +..+..++.+|+++|..+..+......+++
T Consensus       338 kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~r~~f~~TdcI  413 (708)
T PF05804_consen  338 KLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEARSMFAYTDCI  413 (708)
T ss_pred             HHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhhHHHHhhcchH
Confidence            999999999999999999999965 5679999999999999999943   356677999999999988766666678899


Q ss_pred             HHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562          411 PVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII  489 (670)
Q Consensus       411 ~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  489 (670)
                      |.+++++-. +++.+...++..+.|++... .+.+.+.+.++++.|+...-....   ...+.++.|++.+++.....+.
T Consensus       414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~  489 (708)
T PF05804_consen  414 PQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV  489 (708)
T ss_pred             HHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH
Confidence            999987654 56777888889999999764 566778888899998888655432   2345789999998754444333


Q ss_pred             hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHHHHHHHHhcCCCC
Q 037562          490 NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEAAWAISNATKFGT  567 (670)
Q Consensus       490 ~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~  567 (670)
                        +++..|+..+..+.+++..-++.++|+|+...+.+..+.+.+.+++|.+.+.+..+  ++++..+++..++.++.  +
T Consensus       490 --~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d  565 (708)
T PF05804_consen  490 --DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--D  565 (708)
T ss_pred             --HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--C
Confidence              47888888888776888999999999999876666666666789999999999844  46899999999999998  7


Q ss_pred             HHHHHHHHHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC
Q 037562          568 HEQIKHLVREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD  645 (670)
Q Consensus       568 ~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~  645 (670)
                      +..+..+.+.|.++.|+++++.  +|.+++.+.+.++++++...+.             +..++.+.++...+-.|.++.
T Consensus       566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------r~~ll~~~~~~~ylidL~~d~  632 (708)
T PF05804_consen  566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------REVLLKETEIPAYLIDLMHDK  632 (708)
T ss_pred             HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------HHHHHhccchHHHHHHHhcCC
Confidence            8889999999999999999954  5688999999999999977554             355778899999999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 037562          646 DNGISEKAVEILETY  660 (670)
Q Consensus       646 ~~~v~~~a~~~l~~~  660 (670)
                      |++|++.|..++.-.
T Consensus       633 N~~ir~~~d~~Ldii  647 (708)
T PF05804_consen  633 NAEIRKVCDNALDII  647 (708)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999988777654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=1.1e-23  Score=221.53  Aligned_cols=361  Identities=19%  Similarity=0.238  Sum_probs=304.0

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +.++.|++.|.+++.++...++..|.+++..  .++...+.+.|+++.|++++.+++ .+++..|+++|.|++. +++.|
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence            6799999999999999999999999999776  678899999999999999999988 8999999999999998 89999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..+++.|++|.|+.+|.++  ..+..|+.+|.+++.++ ..|..+...++++.+++++...+++.+...+++.+.|++.+
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999864  46677999999999754 57888888899999999987877888888899999999999


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHH
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRN  476 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~  476 (670)
                      ..+.......++++.|++..-.....+   .+..++|++.+++.....+.  +++..++..+..+ +++....++++|+|
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaN  517 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILAN  517 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence            866665555678888876654332222   35799999988754333333  5778888888764 56789999999999


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh--cCChhHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ--NTEFDTKK  553 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~  553 (670)
                      +...+......+.+.+++|.+.+.|..+. .+++.-+++..++.++. ++.....+.+.|+++.|+.++.  .+|.++..
T Consensus       518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl  596 (708)
T PF05804_consen  518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVL  596 (708)
T ss_pred             cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence            99876666666667899999999997653 55788899999998875 5777888889999999999998  45789999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHH-HcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562          554 EAAWAISNATKFGTHEQIKHLV-REGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEM  613 (670)
Q Consensus       554 ~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  613 (670)
                      +.++++.++..+  ++.+..++ +.+++..|++++++.+++++..|-.+|.-+....+...
T Consensus       597 Qil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~  655 (708)
T PF05804_consen  597 QILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA  655 (708)
T ss_pred             HHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            999999999996  35556665 58899999999999999999999999999988776654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.84  E-value=7.5e-19  Score=180.41  Aligned_cols=368  Identities=20%  Similarity=0.247  Sum_probs=286.2

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR--CR  359 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~  359 (670)
                      -+|..+.+|.+.+ +.+|..|+..+..++.++.+.+..+.+.|+|+.++.++.+.+.+|+.+|+++|.||..+...  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4778899999999 89999999999999999999999999999999999999999999999999999999976655  77


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhcc--------------CChhHH
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS--------------NDEEVL  425 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~--------------~~~~v~  425 (670)
                      -.+.+.++++.+++++....|.++++.+..+|+||++.+ .....++...++.|..-.-.              .+.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            788899999999999988899999999999999999984 33344445555555443321              136788


Q ss_pred             HHHHHHHHHhccCChHHHHHHHH-cCCHHHHHHhcCC------CCccchhHHHHHHHHhhcCCch---------------
Q 037562          426 TDACWALSYLSDGTNDKVQAVIE-AGVYPRLVELLGH------SSSSVLTPALRTIRNIVKGDDF---------------  483 (670)
Q Consensus       426 ~~al~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~---------------  483 (670)
                      .++..||+|++....+..+.+.+ .|+|..|+..+++      .+....+++.-++.|++..-..               
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            99999999999866666666655 4889999988873      3556778888888888742210               


Q ss_pred             ----------------hhHH----------------------HHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH
Q 037562          484 ----------------QTQC----------------------IINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR  525 (670)
Q Consensus       484 ----------------~~~~----------------------l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~  525 (670)
                                      ..+.                      +....++.....++....++.+.+.++++|.|++++..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                            0000                      01112334444555544478899999999999998432


Q ss_pred             ----HHHHHH-HhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC------ChHH
Q 037562          526 ----EQIQAV-IDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA------DPKI  594 (670)
Q Consensus       526 ----~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v  594 (670)
                          .....+ .+..+++.++++++.++..|...++.+|.|++..  ... +.++..++++.|++.|...      +.++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence                223333 5778999999999999999999999999999994  343 4456688999999999543      3578


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCcccc
Q 037562          595 VTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS-HDDNGISEKAVEILETYWSSRVIG  667 (670)
Q Consensus       595 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~~l~~~~~~~~~~  667 (670)
                      ...++..+.+++......             ...+.+.+++++|..+.. ..++.+.+.|..++..+|+.++-+
T Consensus       629 v~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh  689 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH  689 (717)
T ss_pred             HHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999998654332             334558999999988854 456688999999999999887654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=5e-18  Score=173.21  Aligned_cols=391  Identities=20%  Similarity=0.298  Sum_probs=311.5

Q ss_pred             ccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          238 EILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       238 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      +.+.+|++.++.+ |+..|.+|+..|+.+....+.+...-+--..++|.|+.+|+.+.+.+++..|+++|++++.-.|..
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            3578999999865 999999999999999887656555544455689999999999988999999999999999989999


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562          317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC  395 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  395 (670)
                      ...+++.++||.|+.-|.. +..++.++++.+|..|+...+   ..+++.|++...+.++ +.-+..+++.|+.+.+|+|
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~C  322 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCC  322 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999986654 889999999999999997765   4678999999999999 7778899999999999999


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc---CChHHHHHHHHcCCHHHHHHhcCCCC----ccchh
Q 037562          396 RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD---GTNDKVQAVIEAGVYPRLVELLGHSS----SSVLT  468 (670)
Q Consensus       396 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~  468 (670)
                      ..-+...+..+...+|.|..+|+..|....+.++.|+..++.   +.++..+.+...|++.....++.-..    ..+..
T Consensus       323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence            998888888899999999999999999999999999999884   35677777888999999999987643    34566


Q ss_pred             HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC---c----------hhHHHHHHHHH------------------
Q 037562          469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH---E----------ESIKKEVSWII------------------  517 (670)
Q Consensus       469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~---~----------~~v~~~a~~~L------------------  517 (670)
                      ..++.+..++.+.+.....+.+.++...+..+|....   +          +.-..+....+                  
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~  482 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS  482 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence            7788888888887877777777777777777764310   0          00000000000                  


Q ss_pred             ------------------------------HHhhc--------------------------CCHHHHHHHHhcCChHHHH
Q 037562          518 ------------------------------SNITC--------------------------GNREQIQAVIDSGLIGPIV  541 (670)
Q Consensus       518 ------------------------------~~l~~--------------------------~~~~~~~~l~~~~~i~~L~  541 (670)
                                                    ..+..                          ..++..+.+++ .++|.|+
T Consensus       483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv  561 (1051)
T KOG0168|consen  483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV  561 (1051)
T ss_pred             hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence                                          00000                          11222222332 4788999


Q ss_pred             HHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562          542 NLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVR-EGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAV  619 (670)
Q Consensus       542 ~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  619 (670)
                      ++.. +.++.||..++.||..+....+.+.+..++. ..+-..+..++.++|..|..-|+.....+++.-..        
T Consensus       562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd--------  633 (1051)
T KOG0168|consen  562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD--------  633 (1051)
T ss_pred             HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH--------
Confidence            9888 4589999999999999999888888887775 45566677899999999999999999988875433        


Q ss_pred             CCccHHHHHHHHhchHHHHHHhhcCC
Q 037562          620 GDFNQYAQLVEEAEGLEKIENLQSHD  645 (670)
Q Consensus       620 ~~~~~~~~~~~~~g~~~~l~~L~~~~  645 (670)
                          .|...|.+.|.+..+.+|....
T Consensus       634 ----~F~~~F~REGV~~~v~~L~~~~  655 (1051)
T KOG0168|consen  634 ----TFSPSFRREGVFHAVKQLSVDS  655 (1051)
T ss_pred             ----HhhhhHhhhhHHHHHHHHhccC
Confidence                4677899999999999997633

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.78  E-value=7.4e-17  Score=165.91  Aligned_cols=363  Identities=19%  Similarity=0.227  Sum_probs=278.2

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--h
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE--N  316 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~  316 (670)
                      .+|..+.++.+.++.+|..|+..+..+...+ +.....+.+.|+++.|+.++.+.. .+|+.+|+++|.|+..++..  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            4789999999999999999999998775543 666678889999999999999999 89999999999999987655  8


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------------cCChh
Q 037562          317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-------------NANLS  382 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~-------------~~~~~  382 (670)
                      +-.+.+.++++.++++|+. .|.++++.+..+|+||+..+ ..+..++.. .+..|...+..             ..+.+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence            8899999999999999987 89999999999999999773 455555443 45666554421             11357


Q ss_pred             HHHHHHHHHHhhhcCCCCC--ChhhhhhhHHHHHHhhc------cCChhHHHHHHHHHHHhccCCh-----HHHHH----
Q 037562          383 MLRTATWTLFNFCRGKPQP--PFNQVRPALPVLAQLIR------SNDEEVLTDACWALSYLSDGTN-----DKVQA----  445 (670)
Q Consensus       383 ~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~L~~lL~------~~~~~v~~~al~~L~~l~~~~~-----~~~~~----  445 (670)
                      +..++.+||.|++......  ......|.|..|+..++      ..|....+++..+++|++..-.     ...+.    
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            8889999999999865332  22333788999888876      2367788899999999885422     00000    


Q ss_pred             --------------------------------------------HHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhhcC
Q 037562          446 --------------------------------------------VIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIVKG  480 (670)
Q Consensus       446 --------------------------------------------~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~  480 (670)
                                                                  +....++..-..+|. +.+..+.+.++.+|-|++.+
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                                                        001112333233333 34566889999999999986


Q ss_pred             Cchh----hHHH-HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC------Ch
Q 037562          481 DDFQ----TQCI-INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT------EF  549 (670)
Q Consensus       481 ~~~~----~~~l-~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~  549 (670)
                      ....    ...+ .+..+++.+++++..+ ++.|...++.+|.|++.+ .. .+.++..++++.|++.|...      +.
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~se  626 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLSE  626 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence            5432    3333 5778999999999999 999999999999999774 33 34455578999999999843      36


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHhh
Q 037562          550 DTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       550 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++...++.+|.++... +....+.+.+.++++.|+.+.++. ++.+.++|...+..+=.+.
T Consensus       627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999999976 788999999999999999999764 5578888877777765443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.75  E-value=2.8e-16  Score=168.13  Aligned_cols=362  Identities=18%  Similarity=0.198  Sum_probs=278.1

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHH
Q 037562          241 PAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD--YPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       241 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      ..++.++...|.   ..-++.|..+.+.  .+....+...|.++.|++++.-++  ..+.+..|-.+|.||....++.+.
T Consensus       200 ~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr  274 (2195)
T KOG2122|consen  200 NSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR  274 (2195)
T ss_pred             hHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence            345555555544   3344566666554  667788999999999999996553  267899999999999986655544


Q ss_pred             HHHhCCChHHHHH----------hhCC-----CCHHHHH---HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc--
Q 037562          319 VVIDHGAVPIFVK----------LLAS-----PSVDVRK---QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN--  378 (670)
Q Consensus       319 ~i~~~~~i~~L~~----------lL~~-----~~~~v~~---~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~--  378 (670)
                      .=.+..++..|-+          .+..     .+..+..   .|+.+|..++ .+.+.|..+.+.|++.++-+++.-+  
T Consensus       275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~  353 (2195)
T KOG2122|consen  275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHE  353 (2195)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3333333332221          1211     1222222   4556666665 4567899999999999998877321  


Q ss_pred             ---------CChhHHHHHHHHHHhhhcCCCCC--ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH-H
Q 037562          379 ---------ANLSMLRTATWTLFNFCRGKPQP--PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQA-V  446 (670)
Q Consensus       379 ---------~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~-~  446 (670)
                               ....+++++..+|.||..++...  ......|++..++..|.+..+++..-.+.+|+||+-..+..... +
T Consensus       354 mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvL  433 (2195)
T KOG2122|consen  354 MHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVL  433 (2195)
T ss_pred             hcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHH
Confidence                     12378999999999999988333  33344899999999999988899999999999999766655555 4


Q ss_pred             HHcCCHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHH-hCCChHHHHHhhccCC---chhHHHHHHHHHHHhh
Q 037562          447 IEAGVYPRLVEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQCII-NCGALPYFLDMLVHNH---EESIKKEVSWIISNIT  521 (670)
Q Consensus       447 ~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~  521 (670)
                      .+.|-+..|+.+ +....+......+.+||||+.+..+....+. -.|.+.+|+.+|....   .-.+.+.|.++|.|..
T Consensus       434 rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVS  513 (2195)
T KOG2122|consen  434 RETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVS  513 (2195)
T ss_pred             HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHH
Confidence            556777777766 5556777889999999999998876666555 4589999999998652   4467888999999986


Q ss_pred             c---CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHH
Q 037562          522 C---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVC  598 (670)
Q Consensus       522 ~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  598 (670)
                      .   ..+++++.+.+++++..|+..|++.+..+..++|++|.||+.. +++..++|++.|+++.|..++++++..+..-+
T Consensus       514 S~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GS  592 (2195)
T KOG2122|consen  514 SLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGS  592 (2195)
T ss_pred             hHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhH
Confidence            5   5788889999999999999999999999999999999999998 78888999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 037562          599 LEGLENILKVG  609 (670)
Q Consensus       599 ~~~l~~l~~~~  609 (670)
                      ..+|.|++..-
T Consensus       593 aaALrNLln~R  603 (2195)
T KOG2122|consen  593 AAALRNLLNFR  603 (2195)
T ss_pred             HHHHHHHhcCC
Confidence            99999998654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.73  E-value=2.5e-14  Score=150.22  Aligned_cols=367  Identities=16%  Similarity=0.183  Sum_probs=278.1

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562          284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVL  363 (670)
Q Consensus       284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  363 (670)
                      +.+...+++.+ .+....++.+|..+.. .......  ..+..+.+...|.++++.+|..+++.+++++.++......+.
T Consensus        41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSN-REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcC-hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            33778888777 6777888899999877 2222222  346778999999999999999999999999988877777888


Q ss_pred             hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 037562          364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKV  443 (670)
Q Consensus       364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~  443 (670)
                      +.+.++.++..+ .+++..+...|+.+|.+++...+........+.++.|..++...++.+|..++.++.+++..+++..
T Consensus       117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            889999999999 8889999999999999999876544444446668889999988888999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-ch---h-HHHHHHHHHH
Q 037562          444 QAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EE---S-IKKEVSWIIS  518 (670)
Q Consensus       444 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~---~-v~~~a~~~L~  518 (670)
                      ..+.+.|+++.++..+.++|.-++.+|+.++..++. .+...+.+.+.|+++.|..++.+.. ++   . .--......+
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            999999999999999999888899999999999999 6677888999999999999997653 22   0 1122335566


Q ss_pred             HhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHH-HHcC-----CcHHHHhhccCCCh
Q 037562          519 NITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHL-VREG-----CVKPLCDLLLCADP  592 (670)
Q Consensus       519 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~-----~i~~L~~ll~~~~~  592 (670)
                      +++...+....... ..++..+.+++.+.|...+..|..+++.++.  +.+....+ ...+     ++........+...
T Consensus       275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            66654444332222 2356677777888999999999999999997  56766666 3322     35555556677888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhch--HH-HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562          593 KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEG--LE-KIENLQSHDDNGISEKAVEILETYWSS  663 (670)
Q Consensus       593 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~-~l~~L~~~~~~~v~~~a~~~l~~~~~~  663 (670)
                      +++.+++.++.+++...+.....    .-.+-....+...+.  .. .+..+...+=+|++..+..++..+...
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDN----DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            99999999999998765531100    000111222222222  22 456667778899999999999887654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.72  E-value=6.8e-16  Score=146.39  Aligned_cols=352  Identities=16%  Similarity=0.147  Sum_probs=257.7

Q ss_pred             CCChHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562          249 SDDNSLQLEATTLFINLLSFD--RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAV  326 (670)
Q Consensus       249 ~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  326 (670)
                      ..+..+...+..++...+..+  ++...+.-+..+++..|.+...+++ .++..+++++|+|++..+.+.|..+.+.|+-
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            344556666777777775431  1122233355677888888888887 7999999999999999999999999999998


Q ss_pred             HHHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-CChhHHHHHHHHHHhhhcCC
Q 037562          327 PIFVKLLAS-------PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN-ANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       327 ~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~  398 (670)
                      +.++++|+.       .+.+....+...|.|..-++.+.+..+.+.|+++.|...+--+ .+....+.......|+.+-.
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            888888875       2346667788899999999999999999999999888877322 23333334443344433221


Q ss_pred             C--CCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCcc-------ch
Q 037562          399 P--QPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSS-------VL  467 (670)
Q Consensus       399 ~--~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~-------v~  467 (670)
                      .  ...+.......-.+++++.+. ++++.+.+...++..++++..... +.+.|.+..++.+++. ++..       .-
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~-la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLS-LAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeee-hhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence            1  112222344555667777644 677888888999998877654433 7777999999998876 3222       22


Q ss_pred             hHHHHHHHHhhcCCchhhHHHHhCC-ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037562          468 TPALRTIRNIVKGDDFQTQCIINCG-ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN  546 (670)
Q Consensus       468 ~~a~~~L~~l~~~~~~~~~~l~~~~-~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~  546 (670)
                      ..++....-+..+++.. +.+...+ +++.+.+++.++ +......+..+++|+++. ++...++++.+++..|++++..
T Consensus       291 k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555443 4455444 899999999999 999999999999999876 5566788899999999999873


Q ss_pred             -----CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          547 -----TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       547 -----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                           ++.+++..++.||.|+.-.  ......++..|+.+.+...++...|.+...-+..+.-+..
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d  431 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD  431 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence                 5678999999999999883  4566788999999999999999999999888888775543

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.72  E-value=7.3e-14  Score=146.78  Aligned_cols=396  Identities=16%  Similarity=0.176  Sum_probs=291.3

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 037562          242 AMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI  321 (670)
Q Consensus       242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  321 (670)
                      .++..+...+.+....++..|..+....  .. ..+ ..+..+.+...|.+++ +.||..+++.+++++.++....+.+.
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~-~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSAL--SP-DSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhcc--CH-HHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            3777788777777788888888887652  22 222 4557888999999999 89999999999999997777788888


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC
Q 037562          322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP  401 (670)
Q Consensus       322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  401 (670)
                      +.++++.++..+.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++..++..
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999999876654 4566777788888888 5556677888999999998876443


Q ss_pred             C-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc------chhHHHHHH
Q 037562          402 P-FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS------VLTPALRTI  474 (670)
Q Consensus       402 ~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~------v~~~a~~~L  474 (670)
                      . .....|+++.++..++++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+.+.+      ..-..+...
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            3 33337899999999999999999999999999998 455677789999999999999874322      223344677


Q ss_pred             HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH-Hhc-CC----hHHHHHHhhcCC
Q 037562          475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV-IDS-GL----IGPIVNLLQNTE  548 (670)
Q Consensus       475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~-~~----i~~L~~ll~~~~  548 (670)
                      ++++...+....... ..++..+..++.+. ++..+..|..+++.++.. .+....+ .+. +.    +........++.
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            788775333222111 23556667777788 999999999999999754 4555555 332 23    444444455677


Q ss_pred             hhHHHHHHHHHHHhcCCCCH---HH----HHHH---HHcCCcH-HHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCC
Q 037562          549 FDTKKEAAWAISNATKFGTH---EQ----IKHL---VREGCVK-PLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGT  617 (670)
Q Consensus       549 ~~v~~~a~~aL~~l~~~~~~---~~----~~~l---~~~~~i~-~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  617 (670)
                      .++|..+..++.++...+.+   +.    .+..   ...+-.. .+..+++.+-++++.++...+..++... +.     
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~-Wg-----  424 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP-WG-----  424 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH-HH-----
Confidence            89999999999999654332   11    1111   1233444 7888889999999999999999988653 22     


Q ss_pred             CCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          618 AVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       618 ~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                             ...++...|.++.+.+=....+.+.++.--.++..+.
T Consensus       425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence                   3456666777777655455556666655555555443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=4.2e-14  Score=136.12  Aligned_cols=382  Identities=18%  Similarity=0.155  Sum_probs=294.1

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 037562          249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPI  328 (670)
Q Consensus       249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~  328 (670)
                      ....++...|...|.|++.+  ...-..+....++..|++.|+.++ .++...+...|..++- ..+++..+.+.|++..
T Consensus       274 ~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveK  349 (791)
T KOG1222|consen  274 RKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEK  349 (791)
T ss_pred             HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHH
Confidence            34567788888999999876  444567888889999999999988 7999999999999987 7788889999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhh
Q 037562          329 FVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRP  408 (670)
Q Consensus       329 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  408 (670)
                      |+++....+++++..++..+.|++.+. ..|..+++.|.+|.+..++.++..   ..-|...++.++.++..........
T Consensus       350 L~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTd  425 (791)
T KOG1222|consen  350 LLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTD  425 (791)
T ss_pred             HHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHH
Confidence            999999999999999999999999665 468889999999999999944332   2346778888888877777777788


Q ss_pred             hHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562          409 ALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       409 ~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~  486 (670)
                      +++.+.+.+-+ .+.+|-...+..-.|++-+ ..+.+.+.+..++..++.. +++.+.    .-...+.|++.+......
T Consensus       426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn  500 (791)
T KOG1222|consen  426 CIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQN  500 (791)
T ss_pred             HHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHH
Confidence            99998876654 4556655555555566643 2244556666677776655 344443    234667888887665555


Q ss_pred             HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHHHHHHHHhcC
Q 037562          487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEAAWAISNATK  564 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~  564 (670)
                      .+++  .+.-|...++...+...-.++.++++|+...+-+..+.+-+.+.+|-+-..+..+  ..+++...+.+++.++.
T Consensus       501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~  578 (791)
T KOG1222|consen  501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR  578 (791)
T ss_pred             HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh
Confidence            5554  5677777777665677888999999999887666667777889999999998843  45788888889999888


Q ss_pred             CCCHHHHHHHHHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh
Q 037562          565 FGTHEQIKHLVREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ  642 (670)
Q Consensus       565 ~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~  642 (670)
                        +...+..+...++|+.|+++++.  .|.+.+.+.+..+..++.....             ..-++.+...-..+-.|+
T Consensus       579 --d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~~miket~~~AylIDLM  643 (791)
T KOG1222|consen  579 --DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RRLMIKETALGAYLIDLM  643 (791)
T ss_pred             --hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HHHHHhhccchHHHHHHH
Confidence              56777888899999999999964  5667888888888888876433             244667777777789999


Q ss_pred             cCCCHHHHHHHHHHHHHh
Q 037562          643 SHDDNGISEKAVEILETY  660 (670)
Q Consensus       643 ~~~~~~v~~~a~~~l~~~  660 (670)
                      ++.+.++++-+...+.-+
T Consensus       644 HDkN~eiRkVCDn~LdIi  661 (791)
T KOG1222|consen  644 HDKNAEIRKVCDNALDII  661 (791)
T ss_pred             hcccHHHHHHHHHHHHHH
Confidence            999999998776665543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=2.6e-14  Score=131.56  Aligned_cols=311  Identities=12%  Similarity=0.113  Sum_probs=255.2

Q ss_pred             cCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562          248 WSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIASGTSENTKVVIDHGAV  326 (670)
Q Consensus       248 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  326 (670)
                      .+++..+...++.+|..+....     ..+.+..++..++.+|... +..++......++..-+...+.+|+.+++.+++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            4678889999999998885542     3466777889999988543 337888899999999888899999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          327 PIFVKLLAS-PSVDVRKQTVWALGNVAGDSP---------RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       327 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---------~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                      +.+.+.+.. ...++...+.|++.-+..++.         .....+...|++..|+..+....++++...++.+|..++-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999977655 444677788999998876543         3456677788899999999888899999999999999998


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccC-Chh---HHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSN-DEE---VLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPA  470 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~-~~~---v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a  470 (670)
                      .+.........|++..++.++.+. +..   ....++..|+.++.+++ ....+++.|+.+.++.++..  +++.|...+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            765556666789999999999874 333   44678888888886544 55668888999999988753  678899999


Q ss_pred             HHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCCh
Q 037562          471 LRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEF  549 (670)
Q Consensus       471 ~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  549 (670)
                      +.+++-++-..++....+++.|+-...++.++..+ ...+++.|||.+.|++..+.++...++.. +++.|+......++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence            99999999999999999999999999999997553 66799999999999999888877777764 67888888888888


Q ss_pred             hHHHHHHHHHHHhcCC
Q 037562          550 DTKKEAAWAISNATKF  565 (670)
Q Consensus       550 ~v~~~a~~aL~~l~~~  565 (670)
                      .....|-.||..+...
T Consensus       430 tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGCD  445 (461)
T ss_pred             cHHHHHHHHHHhcCcc
Confidence            8999999999988763

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=9.2e-14  Score=128.00  Aligned_cols=308  Identities=17%  Similarity=0.188  Sum_probs=247.9

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q 037562          289 FLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLSQG  366 (670)
Q Consensus       289 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  366 (670)
                      +-.+++ ..+-..++.+|..+..+.|+    +.++.+...++.+|..  ++.++-...+..+..-|...+.+|+.+.+.+
T Consensus       115 la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~  189 (461)
T KOG4199|consen  115 LAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK  189 (461)
T ss_pred             HhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence            334455 67888888888888876665    5567889999998865  6778888888888888888888999999999


Q ss_pred             ChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC----------hhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHh
Q 037562          367 ALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP----------FNQVRPALPVLAQLIRSN-DEEVLTDACWALSYL  435 (670)
Q Consensus       367 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l  435 (670)
                      +.+.+...+.......+.+.++|++..+...+..+.          .....+++..|+..++-. |+.+...++.+|..+
T Consensus       190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l  269 (461)
T KOG4199|consen  190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL  269 (461)
T ss_pred             HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence            999888888666666899999999999988764322          122255677888888754 789999999999999


Q ss_pred             ccCChHHHHHHHHcCCHHHHHHhcCCCCc-c---chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc-cCCchhHH
Q 037562          436 SDGTNDKVQAVIEAGVYPRLVELLGHSSS-S---VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV-HNHEESIK  510 (670)
Q Consensus       436 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~---v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~~v~  510 (670)
                      +.. ++..+.+.+.|++..++.++.+.+. .   ....++..|..++. ++.....+++.|+.+.++.++. +..+|.|.
T Consensus       270 AVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi  347 (461)
T KOG4199|consen  270 AVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVI  347 (461)
T ss_pred             HHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHH
Confidence            975 5567889999999999999998433 3   44678888888886 5566777899999999999874 33389999


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc
Q 037562          511 KEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL  588 (670)
Q Consensus       511 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  588 (670)
                      .+++.+++-++...|+....+++.|+-...++.++..  ...++++|++++.|+..+ +.+++..++.. +++.|+..-+
T Consensus       348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l~~-GiE~Li~~A~  425 (461)
T KOG4199|consen  348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILLAN-GIEKLIRTAK  425 (461)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHHhc-cHHHHHHHHH
Confidence            9999999999999999999999999999999998843  468999999999999998 56676666665 6889999888


Q ss_pred             CCChHHHHHHHHHHHHH
Q 037562          589 CADPKIVTVCLEGLENI  605 (670)
Q Consensus       589 ~~~~~v~~~a~~~l~~l  605 (670)
                      ..++.....+-.+|..+
T Consensus       426 ~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  426 ANHETCEAAAKAALRDL  442 (461)
T ss_pred             hcCccHHHHHHHHHHhc
Confidence            88888877777776654

>PRK09687 putative lyase; Provisional

Probab=99.68  E-value=5.2e-15  Score=142.20  Aligned_cols=255  Identities=15%  Similarity=0.105  Sum_probs=204.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      -++.|...|.+++ ..+|..|+++|..+..           ..+++.+..++.++++.+|..++++|+.+...... +. 
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-~~-   89 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-QD-   89 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-hH-
Confidence            5778899999999 8999999999998864           34578888899999999999999999998532211 11 


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND  441 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  441 (670)
                          ..++.|..++.++.++.|+..|+.+|.+++......    ...+++.+...+.++++.||..++.+|+.+...   
T Consensus        90 ----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~---  158 (280)
T PRK09687         90 ----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE---  158 (280)
T ss_pred             ----HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH---
Confidence                246777777668889999999999999997554221    133566677888888999999999999877521   


Q ss_pred             HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562          442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT  521 (670)
Q Consensus       442 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~  521 (670)
                              ..++.|+.++.++++.||..|+.+|+.+....+         .+++.|+..+.+. +..||..|+++|+.+.
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    367889999999999999999999999843222         3567799999988 9999999999999973


Q ss_pred             cCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHH
Q 037562          522 CGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLE  600 (670)
Q Consensus       522 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~  600 (670)
                      .  +         .+++.|++.+.+++  ++..|+.+|+++...   .         +++.|.++++ ++|+.++..+.+
T Consensus       221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~---~---------a~p~L~~l~~~~~d~~v~~~a~~  275 (280)
T PRK09687        221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK---T---------LLPVLDTLLYKFDDNEIITKAID  275 (280)
T ss_pred             C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH---h---------HHHHHHHHHhhCCChhHHHHHHH
Confidence            2  2         37889999998765  778899999998762   2         6899999996 889999999998


Q ss_pred             HHHH
Q 037562          601 GLEN  604 (670)
Q Consensus       601 ~l~~  604 (670)
                      ++..
T Consensus       276 a~~~  279 (280)
T PRK09687        276 KLKR  279 (280)
T ss_pred             HHhc
Confidence            8764

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.68  E-value=2.5e-14  Score=135.95  Aligned_cols=403  Identities=12%  Similarity=0.026  Sum_probs=292.9

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC------CCHHHHHHHHHHHHHHcC
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ------DYPQLQFKAAWALTNIAS  311 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~------~~~~v~~~a~~~L~~l~~  311 (670)
                      +.+..+.+...|++.++..+..++|+|+...+ .+.+..+.+.|+-..++..|+.-      .+.+.-..++..|.|...
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            45677777777888999999999999997765 88889999999977777766532      224666778889999999


Q ss_pred             CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562          312 GTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNENANLSMLRTAT  388 (670)
Q Consensus       312 ~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~  388 (670)
                      ++.+.+..+++.|+++.|...+.-  ++....+......+|+.+-. +...+...+......+++++.....++......
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999999987754  66667777777666665321 223445556667778888887777888999999


Q ss_pred             HHHHhhhcCCCCCChhhhhhhHHHHHHhhcc-CC-------hhHHHHHHHHHHHhccCChHHHHHHHHcC-CHHHHHHhc
Q 037562          389 WTLFNFCRGKPQPPFNQVRPALPVLAQLIRS-ND-------EEVLTDACWALSYLSDGTNDKVQAVIEAG-VYPRLVELL  459 (670)
Q Consensus       389 ~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~-------~~v~~~al~~L~~l~~~~~~~~~~~~~~~-~i~~L~~lL  459 (670)
                      .++...+.++...-.....|.+..+..+++. .+       -.....++....-+..+++ ..+.+...+ +++.+...+
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHh
Confidence            9999999988666666667888888887764 22       2233334444444444444 455566655 899999999


Q ss_pred             CCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC----CchhHHHHHHHHHHHhhcCCHHHHHHHHhcC
Q 037562          460 GHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN----HEESIKKEVSWIISNITCGNREQIQAVIDSG  535 (670)
Q Consensus       460 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~  535 (670)
                      .+++......+.-+|+|+++.+ ..+..+++.+++..|++.+...    .+.+++..++.+++|+.-. ..+...+..+|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence            9999999999999999999954 5566689999999999998541    1677888999999999764 33456788999


Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCCcHHHHhhccCCChH-HHHHHHHHHHHHHHhhhhhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR-EGCVKPLCDLLLCADPK-IVTVCLEGLENILKVGVAEM  613 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~~~  613 (670)
                      +.+.+...++...+.+...-...+.-+... -+.....+.+ ...++.|++--+++|.. +.....+.+..+++..-.  
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~--  479 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY--  479 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh--
Confidence            999999999999999998888888776653 2212333332 23455566655666654 666666777666654211  


Q ss_pred             ccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 037562          614 NTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEI  656 (670)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~  656 (670)
                               ..+.-.+-+.||++........++-..+..|..+
T Consensus       480 ---------kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVa  513 (604)
T KOG4500|consen  480 ---------KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVA  513 (604)
T ss_pred             ---------hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHH
Confidence                     1134456677888777766666666666655433

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=9.1e-14  Score=133.84  Aligned_cols=360  Identities=16%  Similarity=0.176  Sum_probs=281.1

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..+..+++.+..++.++.......|.+++-.  .++...+.+.|++..|++++...+ ++++..+++.+.|++. +...+
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr  379 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR  379 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence            3477889999988899999999999999777  678889999999999999999999 8999999999999998 77888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..++..|.+|.+..++.+..  -...|+..+..++.++ ..+..+....+++.+.+.+....+..+-......-.|+|.+
T Consensus       380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            99999999999999997643  3345778888888654 45777777788999998887777777766666667788888


Q ss_pred             CCCCChhhhhhhHHHHHH-hhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHH
Q 037562          398 KPQPPFNQVRPALPVLAQ-LIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIR  475 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~  475 (670)
                      ..+.+......++..|+. .+++.|+-+    ...++|++.+.......+++  .+..+...++. +++.....++.+++
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA  530 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence            766665555556666554 455555433    46788888876655444554  56667777765 45568889999999


Q ss_pred             HhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh--cCChhHH
Q 037562          476 NIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ--NTEFDTK  552 (670)
Q Consensus       476 ~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~  552 (670)
                      |+...+.+....+.+.+.+|.+-..|+.+- ..++.-..+-+++.++. .......+..+++++.++++++  ..|.++.
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV  609 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFV  609 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence            999877777777778899999999998653 34456666666666654 3555666678899999999998  5678999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHH-HcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562          553 KEAAWAISNATKFGTHEQIKHLV-REGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEM  613 (670)
Q Consensus       553 ~~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  613 (670)
                      .+.++++..+..+  ...+..++ +...-..|++++++.+.++|+.+-.+|..+........
T Consensus       610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA  669 (791)
T KOG1222|consen  610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA  669 (791)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence            9999999999885  34555555 45666779999999999999999999988877665544

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.65  E-value=9.9e-15  Score=156.61  Aligned_cols=345  Identities=18%  Similarity=0.178  Sum_probs=264.0

Q ss_pred             HhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC---CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH
Q 037562          209 YLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS---DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPR  285 (670)
Q Consensus       209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~  285 (670)
                      ..+++.++.....+-+..+..        |.+|.+++.+..   ++.+.+..|-.+|.|+.... .+....-.+..+++.
T Consensus       214 ~ar~fLemSss~esCaamR~S--------gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~kvL~l  284 (2195)
T KOG2122|consen  214 MARTFLEMSSSPESCAAMRRS--------GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREKKVLHL  284 (2195)
T ss_pred             HHHHHHHhccCchhhHHHHhc--------cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHHHHHHH
Confidence            345566666666666555544        889999999973   35678899999999998764 333222223333333


Q ss_pred             HHH----------hhcCC------CCHHHHH-HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC------------C
Q 037562          286 FVE----------FLMRQ------DYPQLQF-KAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS------------P  336 (670)
Q Consensus       286 L~~----------ll~~~------~~~~v~~-~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~------------~  336 (670)
                      |-+          .+...      ...+-+. .|+.+|..++. ++++|..+.+.|+++++-+++.-            .
T Consensus       285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~  363 (2195)
T KOG2122|consen  285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGE  363 (2195)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHH
Confidence            321          12111      1123444 67788888887 89999999999999999987742            2


Q ss_pred             CHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh--hhhHHHH
Q 037562          337 SVDVRKQTVWALGNVAGDSPRCRDLVLS-QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV--RPALPVL  413 (670)
Q Consensus       337 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L  413 (670)
                      ...+|..+..+|.||+.++..++..+.. .|++..++..| .....++....+.+|.||++........+.  .|-+-.|
T Consensus       364 ~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL  442 (2195)
T KOG2122|consen  364 CNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL  442 (2195)
T ss_pred             HHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence            3578999999999999887777666554 58899999999 666678999999999999988644333333  4555555


Q ss_pred             HH-hhccCChhHHHHHHHHHHHhccCChHHHHHHHH-cCCHHHHHHhcCCCC----ccchhHHHHHHHHhhc---CCchh
Q 037562          414 AQ-LIRSNDEEVLTDACWALSYLSDGTNDKVQAVIE-AGVYPRLVELLGHSS----SSVLTPALRTIRNIVK---GDDFQ  484 (670)
Q Consensus       414 ~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~---~~~~~  484 (670)
                      +. .++...+.....++.+|+||+.+..++...+.. .|.+..|+.+|....    -.+.+.|-.+|.|.+.   ....+
T Consensus       443 a~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y  522 (2195)
T KOG2122|consen  443 AACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY  522 (2195)
T ss_pred             HHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence            54 455667788899999999999887777666665 489999999998752    3477788888877754   45667


Q ss_pred             hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          485 TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       485 ~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                      .+.+.+.+.+..|++.|++. +-.+...+|++|.||...++...+.+.+.|.++.|..++.+.+..+..-++.+|.|+..
T Consensus       523 RQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  523 RQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN  601 (2195)
T ss_pred             HHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence            78788999999999999999 99999999999999999999999999999999999999999999999999999999977


Q ss_pred             C
Q 037562          565 F  565 (670)
Q Consensus       565 ~  565 (670)
                      +
T Consensus       602 ~  602 (2195)
T KOG2122|consen  602 F  602 (2195)
T ss_pred             C
Confidence            5

>PRK09687 putative lyase; Provisional

Probab=99.64  E-value=5.5e-14  Score=135.18  Aligned_cols=254  Identities=13%  Similarity=0.091  Sum_probs=200.2

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .++.|+..+.+++..++..|++.|..+...            .+++.+..++.+++ +.+|..|+++|+.+..... .  
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~------------~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~-~--   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ------------DVFRLAIELCSSKN-PIERDIGADILSQLGMAKR-C--   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCcc-c--
Confidence            378899999999999999999999877322            25777888888888 8999999999999975221 1  


Q ss_pred             HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          319 VVIDHGAVPIFVKL-LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       319 ~i~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                         ....++.|..+ ++++++.||..|+.+|++++...+....     .++..+...+ .+.+..|+..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               12356777776 6789999999999999999744321111     1244555556 66688999999999976653 


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                               ...++.|+.++.++++.|+..|+.+|+.+....+         .+++.|+..+.+.++.||..|+++|+.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     4588999999999999999999999999843333         3457788999999999999999999886


Q ss_pred             hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHH
Q 037562          478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAA  556 (670)
Q Consensus       478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~  556 (670)
                      -.           ..+++.|+..++++ +  ++..|+.+++++..  +         ..+|.|..++. .+|.+++..|.
T Consensus       220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence            42           24789999999887 4  77889999999843  2         36888999997 78999999999


Q ss_pred             HHHHH
Q 037562          557 WAISN  561 (670)
Q Consensus       557 ~aL~~  561 (670)
                      +++..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            98864

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.9e-12  Score=138.65  Aligned_cols=363  Identities=17%  Similarity=0.158  Sum_probs=248.1

Q ss_pred             hhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-
Q 037562          236 KLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS-  314 (670)
Q Consensus       236 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-  314 (670)
                      .++.++.+++..+|++++.|..|+..|..+...-.......  -..+.+.+.+.+.+++ ..||..|+++++.++...+ 
T Consensus       116 WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~--~~~l~~lf~q~~~d~s-~~vr~~a~rA~~a~~~~~~~  192 (1075)
T KOG2171|consen  116 WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH--LDDLLRLFSQTMTDPS-SPVRVAAVRALGAFAEYLEN  192 (1075)
T ss_pred             hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh--HHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHhcc
Confidence            55667788888889999999999999998866532221111  1124666677777877 4599999999999887442 


Q ss_pred             --hhHHHHHhCCChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-ccCChhHHHHH
Q 037562          315 --ENTKVVIDHGAVPIFVKLL----ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-ENANLSMLRTA  387 (670)
Q Consensus       315 --~~~~~i~~~~~i~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~-~~~~~~~~~~a  387 (670)
                        ..++.+.  ..+|.++..+    ...+.+....+..+|..++...|..-...+. .++.-.+.... +.-+..+|..|
T Consensus       193 ~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~A  269 (1075)
T KOG2171|consen  193 NKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLA  269 (1075)
T ss_pred             chHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHH
Confidence              3333333  3556565554    4466777778888888888665543222111 01222222221 22345566666


Q ss_pred             HHHHHhhhcCCCCC----------------------------------------------------------Chhhhhhh
Q 037562          388 TWTLFNFCRGKPQP----------------------------------------------------------PFNQVRPA  409 (670)
Q Consensus       388 ~~~L~~l~~~~~~~----------------------------------------------------------~~~~~~~~  409 (670)
                      +.++..+++..|..                                                          ...+....
T Consensus       270 Le~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~  349 (1075)
T KOG2171|consen  270 LEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPL  349 (1075)
T ss_pred             HHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHH
Confidence            66666555442110                                                          00111345


Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562          410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII  489 (670)
Q Consensus       410 i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  489 (670)
                      ++.+-.++++.+..-|.+++.+|+.++++..+.....++ .+++.++..|.++++.||..|+.+++.++.+-....+.-.
T Consensus       350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~  428 (1075)
T KOG2171|consen  350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH  428 (1075)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence            566667788889999999999999999998877776555 7889999999999999999999999999987766666667


Q ss_pred             hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH-HHHHHHhcCChH-HHHHHhhcCChhHHHHHHHHHHHhcCCCC
Q 037562          490 NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE-QIQAVIDSGLIG-PIVNLLQNTEFDTKKEAAWAISNATKFGT  567 (670)
Q Consensus       490 ~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  567 (670)
                      ...+.+.|+..+.+..++.|+.+|+.++-|+....+. .+.... .+++. .+..++.++.+.+++.++.+|+..+....
T Consensus       429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            7788899999999987889999999999999874333 222222 24555 44445567889999999999999998765


Q ss_pred             HHHHHHHHHcCCcHHHHhhccCCC----hHHHHHHHHHHHHHHHh
Q 037562          568 HEQIKHLVREGCVKPLCDLLLCAD----PKIVTVCLEGLENILKV  608 (670)
Q Consensus       568 ~~~~~~l~~~~~i~~L~~ll~~~~----~~v~~~a~~~l~~l~~~  608 (670)
                      ..+.+++-.  .++.|...+.+.+    ..+|.+.+.+++-+-..
T Consensus       508 ~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~A  550 (1075)
T KOG2171|consen  508 EKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARA  550 (1075)
T ss_pred             hhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHH
Confidence            566665433  6777777776544    34666666666655443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.59  E-value=6.4e-13  Score=150.02  Aligned_cols=275  Identities=15%  Similarity=0.147  Sum_probs=220.8

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..++.|++.|.++++.++..|+..|..+..            .+.++.|+..|++++ +.||..|+.+|..+....    
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----  683 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----  683 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence            457889999999999999999999987732            226888999998888 899999999999885411    


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                            ...+.+...|.++++.+|..|+.+|..+....            ...++..+ .+.++.++..|+.+|..+-. 
T Consensus       684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence                  12357888899999999999999999874222            23466667 78899999999999997622 


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                                  .+.+..++.++++.||..++.+|+.+.....         ..++.|..+++++++.+|..|+.+|+.+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        1346788999999999999999998864322         2367788999999999999999999988


Q ss_pred             hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562          478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAW  557 (670)
Q Consensus       478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  557 (670)
                      ....          ...+.+...+.++ ++.||..|+++|+.+..           ...++.|+.++.+++..||..|+.
T Consensus       803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHH
Confidence            5421          1235678889888 99999999999998742           125688999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHH
Q 037562          558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE  603 (670)
Q Consensus       558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~  603 (670)
                      +|+.+..  ++.         ..+.|...+++.+++|+..|..+|.
T Consensus       861 aL~~~~~--~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        861 ALTRWPG--DPA---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHhccCC--CHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            9999732  333         4677888999999999999999885

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.56  E-value=5.1e-12  Score=127.21  Aligned_cols=406  Identities=14%  Similarity=0.077  Sum_probs=276.9

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHH
Q 037562          242 AMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENTKVV  320 (670)
Q Consensus       242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i  320 (670)
                      .++..+.+.+++....|..-..+.+.+. .+....+++.|.++.++.+++..+ ..+.+...+-++...+.+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            3455556778888889999999998876 566667999999999999987654 25777778888888888888899999


Q ss_pred             HhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          321 IDHGAVPIFVKLLASPS-VDVRKQTVWALGNVAGDSPRCRDLVL--SQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       321 ~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~--~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      .+.+.++.+.+++.+++ ..+++.+++++.++...++..-....  ....+..+..+. ......+.+.-+...++++..
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~  170 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST  170 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence            99999999999999988 89999999999999866543211111  112233333333 323334445555566666666


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHH---HhccCChHHHHH----HHHcCCHH--HHHHhcCCCCccchh
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALS---YLSDGTNDKVQA----VIEAGVYP--RLVELLGHSSSSVLT  468 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~---~l~~~~~~~~~~----~~~~~~i~--~L~~lL~~~~~~v~~  468 (670)
                      ..........++.+.+.-++.......|..++.+++   ++..+++.....    ..+.|+.+  .+.+++++++.+.+.
T Consensus       171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l  250 (678)
T KOG1293|consen  171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL  250 (678)
T ss_pred             chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence            544444444777788887887778899999999999   777666644433    33446655  456667777777777


Q ss_pred             HHHHHHHHhhcCCchhh-------------HHHH--------------------------------------hCCChHHH
Q 037562          469 PALRTIRNIVKGDDFQT-------------QCII--------------------------------------NCGALPYF  497 (670)
Q Consensus       469 ~a~~~L~~l~~~~~~~~-------------~~l~--------------------------------------~~~~~~~L  497 (670)
                      .++.++-++...+....             ..+.                                      +....+..
T Consensus       251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~  330 (678)
T KOG1293|consen  251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT  330 (678)
T ss_pred             HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence            77777777765430000             0000                                      00001111


Q ss_pred             HHhhc----------------------------------------------------cCCchhHHHHHHHHHHHhhcCCH
Q 037562          498 LDMLV----------------------------------------------------HNHEESIKKEVSWIISNITCGNR  525 (670)
Q Consensus       498 ~~~l~----------------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~  525 (670)
                      .+++.                                                    .. +..++..|+-++.++++.-.
T Consensus       331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~  409 (678)
T KOG1293|consen  331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVS  409 (678)
T ss_pred             HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHH
Confidence            11110                                                    01 33334444444444443222


Q ss_pred             HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562          526 EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI  605 (670)
Q Consensus       526 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  605 (670)
                      .....+-..+++..|++++..++..++..+.++|+|+....+ .....|+..|+|+.+..++.+.++.++..++|+|.++
T Consensus       410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l  488 (678)
T KOG1293|consen  410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL  488 (678)
T ss_pred             HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            222223346789999999999999999999999999988644 4567789999999999999999999999999999998


Q ss_pred             HHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562          606 LKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSS  663 (670)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~  663 (670)
                      +-......+           .+.. .-=+...|..+.++++..|++.+..++.++-.+
T Consensus       489 ~f~~de~~k-----------~~~~-~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  489 MFNCDEEEK-----------FQLL-AKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HhcchHHHH-----------HHHH-HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            766554332           1111 111245578889999999999999999988755

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.56  E-value=1.4e-12  Score=147.20  Aligned_cols=277  Identities=16%  Similarity=0.165  Sum_probs=219.8

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562          280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      ...++.|++.|.+++ +.||..|+..|+.+..           .+.++.|+..|.++++.+|..|+.+|..+....+   
T Consensus       620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence            346789999999999 9999999999999854           3468899999999999999999999998853222   


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                             ..+.+...+ ++.++.++..++.+|..+....           ...++..|.++|+.++..++.+|+.+..  
T Consensus       685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence                   134566777 6688999999999998875321           2457788999999999999999987631  


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                                  .+.+...+.++++.||..++.+|+.+.....         ..++.|..+++++ ++.||..|+.+|+.
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~  801 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE  801 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence                        1346678999999999999999998865321         2367888999999 99999999999999


Q ss_pred             hhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHH
Q 037562          520 ITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCL  599 (670)
Q Consensus       520 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  599 (670)
                      +... +         ..++.++..+.++++.||..|+.+|+.+...            ..++.|..++++++..||..++
T Consensus       802 ~g~~-~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~  859 (897)
T PRK13800        802 LGCP-P---------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV  859 (897)
T ss_pred             cCCc-c---------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence            8432 1         1235578888999999999999999987542            2568999999999999999999


Q ss_pred             HHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 037562          600 EGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET  659 (670)
Q Consensus       600 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~  659 (670)
                      .+|..+ ...+                      ...+.|...+++++++|+..|.+.|+.
T Consensus       860 ~aL~~~-~~~~----------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        860 LALTRW-PGDP----------------------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHhcc-CCCH----------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999885 1000                      114566777889999999999998863

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.2e-11  Score=132.55  Aligned_cols=424  Identities=17%  Similarity=0.205  Sum_probs=281.8

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEVIQS  280 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  280 (670)
                      +.++|+++.=.+|.++..-=+.+....     +.  ..-..++..+.++ .+.++..-+.++..++...-.+.+     .
T Consensus        50 ~p~~Rq~aaVl~Rkl~~~~w~~l~~e~-----~~--siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W-----P  117 (1075)
T KOG2171|consen   50 DPQVRQLAAVLLRKLLTKHWSRLSAEV-----QQ--SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW-----P  117 (1075)
T ss_pred             ChHHHHHHHHHHHHHHHHHhhcCCHHH-----HH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccch-----H
Confidence            446777776666666666222222111     11  2245677777654 467888888899888876422212     2


Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---ch
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS---PR  357 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~  357 (670)
                      ++++.|++..++++ +..|+.|..+|..+...-...-...+ ..+.+.+.+-+.+++..+|..++++++.++...   +.
T Consensus       118 ell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~  195 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS  195 (1075)
T ss_pred             HHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence            35677777778888 89999999999999873222211111 123455566667777669999999999988544   23


Q ss_pred             hHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHH
Q 037562          358 CRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWAL  432 (670)
Q Consensus       358 ~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L  432 (670)
                      ....+..  .+|.++..+.   +..+.+....+..+|..+....|.--......++........+.  ++.+|..|+.++
T Consensus       196 ~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  196 EVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            3333332  4666776663   34555666788888888888765554445556666666666554  577888888777


Q ss_pred             HHhccCChHHHHH---------------------------------------------HHH---c---------CCHHHH
Q 037562          433 SYLSDGTNDKVQA---------------------------------------------VIE---A---------GVYPRL  455 (670)
Q Consensus       433 ~~l~~~~~~~~~~---------------------------------------------~~~---~---------~~i~~L  455 (670)
                      ..++...+...+.                                             .++   .         -+++.+
T Consensus       274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l  353 (1075)
T KOG2171|consen  274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEAL  353 (1075)
T ss_pred             HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHH
Confidence            7666552211110                                             000   0         145566


Q ss_pred             HHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcC
Q 037562          456 VELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSG  535 (670)
Q Consensus       456 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~  535 (670)
                      -.++++.++..|..|+.+|+.++.+..+.....+ ..+++.++..++++ ++.||..|+.+++.++..-...++.-....
T Consensus       354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~  431 (1075)
T KOG2171|consen  354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHER  431 (1075)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence            6777889999999999999999998877665433 35888899999999 999999999999999886555566556667


Q ss_pred             ChHHHHHHhhc-CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH-HHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562          536 LIGPIVNLLQN-TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVK-PLCDLLLCADPKIVTVCLEGLENILKVGVAEM  613 (670)
Q Consensus       536 ~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  613 (670)
                      +++.|+..+++ .+++|+..|+.++.|++..+.++....-.+ +.++ .+..++.++.+.++..+..+|..+....+.. 
T Consensus       432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~-  509 (1075)
T KOG2171|consen  432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK-  509 (1075)
T ss_pred             ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-
Confidence            88899998885 467999999999999998766555443222 2444 4445668888999999999999988766542 


Q ss_pred             ccCCCCCCccHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHHHHH
Q 037562          614 NTGTAVGDFNQYAQLVEEAEGLEKIENL-QSHDDNGISEKAVEILE  658 (670)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L-~~~~~~~v~~~a~~~l~  658 (670)
                              +.+|.+.+     ++.|.+. ++..+++.+...-+.++
T Consensus       510 --------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~LrgktmE  542 (1075)
T KOG2171|consen  510 --------FIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTME  542 (1075)
T ss_pred             --------hHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHHH
Confidence                    33344443     4666554 44554666655544443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.52  E-value=2.1e-12  Score=121.09  Aligned_cols=239  Identities=18%  Similarity=0.174  Sum_probs=183.8

Q ss_pred             hhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh
Q 037562          406 VRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ  484 (670)
Q Consensus       406 ~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  484 (670)
                      ..+-++.++.+|+. .|+.+++.++.++++.+.. +.....+.+.|+++.+..++.++++.++..|++++.|++...+..
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            35677899999995 5899999999999998765 445666888999999999999999999999999999998855433


Q ss_pred             hHHHHhCCChHHHHHhhccC-CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562          485 TQCIINCGALPYFLDMLVHN-HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNAT  563 (670)
Q Consensus       485 ~~~l~~~~~~~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  563 (670)
                       ..+ +. .++.+.+.+.+. .+..++..+..+|.|++..+ +.. .++ .+.++.++.++.+++..+|..+..+|.|++
T Consensus        89 -~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~-~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   89 -EQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYH-HML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             -HHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chh-hhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence             323 22 455555554433 37889999999999997643 222 333 347999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHhhhhhhccCC-CCCCccHHHHHHHHhc-hHHHHHH
Q 037562          564 KFGTHEQIKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKVGVAEMNTGT-AVGDFNQYAQLVEEAE-GLEKIEN  640 (670)
Q Consensus       564 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~~l~~  640 (670)
                      .  ++...+.++..++...++.+++.. +.++...++..+.++-..-.+...... .-.........|.+.+ ..+.|..
T Consensus       163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            9  688899999999999999999765 678888999999998654333321110 0012233346666666 5667889


Q ss_pred             hhcCCCHHHHHHH
Q 037562          641 LQSHDDNGISEKA  653 (670)
Q Consensus       641 L~~~~~~~v~~~a  653 (670)
                      |..|++++|+.++
T Consensus       241 l~~h~d~ev~~~v  253 (254)
T PF04826_consen  241 LANHPDPEVKEQV  253 (254)
T ss_pred             HHcCCCHHHhhhc
Confidence            9999999999764

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.49  E-value=4.5e-12  Score=118.88  Aligned_cols=196  Identities=21%  Similarity=0.252  Sum_probs=163.0

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562          278 IQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR  357 (670)
Q Consensus       278 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  357 (670)
                      .+.+-+..|+.+|+..++|.+++.|..++++.+. .+.+++.+.+.|+++.+..++.++++.++..|+++|.|++...+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            5566789999999976559999999999999987 88999999999999999999999999999999999999986654 


Q ss_pred             hHHHHHhcCChHHHHHHhccc-CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562          358 CRDLVLSQGALIPLLAELNEN-ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS  436 (670)
Q Consensus       358 ~~~~i~~~~~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~  436 (670)
                      .+..+..  .++.+++.+... -+..++..++.+|.|++..+...  ......+|.++.++.+++..++..++++|.|++
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3444433  466666655343 47789999999999998764332  223568999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcC
Q 037562          437 DGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKG  480 (670)
Q Consensus       437 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~  480 (670)
                      .++. ....++..++...++.+++.+ +.++...++..+.|+..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            8644 566688889999999999885 567889999999999654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.43  E-value=1.3e-11  Score=133.77  Aligned_cols=359  Identities=17%  Similarity=0.210  Sum_probs=253.4

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .+..+.+-+.++++.++..|++++.++..       ..+.+. +++.+.+++.+++ +.||..|+.++..+...+++...
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-------~~~~~~-l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRT-------PEMAEP-LIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-------HHHHHH-HHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-------cchhhH-HHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence            46778888889999999999999999852       223322 5788899999999 89999999999999875555432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhh
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFC  395 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~  395 (670)
                         .. .++.+.+++.++++.++..|+.++..+ ..++....     ..++.++..+.   ...++..+..++.++..++
T Consensus       151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence               22 588999999999999999999999999 22221100     23444444443   6778888889999999887


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHH
Q 037562          396 RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR  475 (670)
Q Consensus       396 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  475 (670)
                      ...+.....  ...++.+..++++.++.|...++.++..+.....      .-..+++.+..++.++++.++..++..|.
T Consensus       221 ~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  221 PMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS  292 (526)
T ss_dssp             SSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             cCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence            654211100  5688888899998899999999999998876433      22257788999999989899999999999


Q ss_pred             HhhcCCchhhHHHHhCCChHHHHHhhc-cCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHH
Q 037562          476 NIVKGDDFQTQCIINCGALPYFLDMLV-HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKK  553 (670)
Q Consensus       476 ~l~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~  553 (670)
                      .++...+.    .+.  .....+..+. ++ +..+|..+..++..++.  +.+...     +++.|...+. ..+.+++.
T Consensus       293 ~l~~~~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~  358 (526)
T PF01602_consen  293 QLAQSNPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRR  358 (526)
T ss_dssp             HHCCHCHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHH
T ss_pred             Hhhcccch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhh
Confidence            99875522    222  2333444555 55 89999999999999975  344333     5667788884 55888999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhc
Q 037562          554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAE  633 (670)
Q Consensus       554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g  633 (670)
                      .++.+++.++.... .....     .++.+++++...+..+...+...+.+++...+...            ...     
T Consensus       359 ~~i~~I~~la~~~~-~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~-----  415 (526)
T PF01602_consen  359 ELIKAIGDLAEKFP-PDAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI-----  415 (526)
T ss_dssp             HHHHHHHHHHHHHG-SSHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH-----
T ss_pred             hHHHHHHHHHhccC-chHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH-----
Confidence            99999999887421 11112     46778888887777777777777777776543221            111     


Q ss_pred             hHHHHH-HhhcCCCHHHHHHHHHHHHHhcC
Q 037562          634 GLEKIE-NLQSHDDNGISEKAVEILETYWS  662 (670)
Q Consensus       634 ~~~~l~-~L~~~~~~~v~~~a~~~l~~~~~  662 (670)
                       +..+. .+..-.++++...+.|++.+|-+
T Consensus       416 -l~~L~~~l~~~~~~~~~~~~~wilGEy~~  444 (526)
T PF01602_consen  416 -LKKLIELLEDISSPEALAAAIWILGEYGE  444 (526)
T ss_dssp             -HHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred             -HHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence             33333 33446777888888888888753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.2e-11  Score=124.16  Aligned_cols=349  Identities=14%  Similarity=0.162  Sum_probs=234.5

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 037562          243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVID  322 (670)
Q Consensus       243 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  322 (670)
                      .+..+.+.++-++.-.-..+..+++...-...     ..++|.|.++|.+++ ...++-|..+|..++.++.+.-+.-..
T Consensus        95 ~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~  168 (885)
T KOG2023|consen   95 CLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVL  168 (885)
T ss_pred             HHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcc
Confidence            34444444444443333334444443322222     236899999999999 689999999999999966554443211


Q ss_pred             C----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          323 H----GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       323 ~----~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      .    -.+|.++++.+++++.+|..|+.++..+....+.  ...... ..++.+..+- .+.+++||++.|.++..|...
T Consensus       169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llev  245 (885)
T KOG2023|consen  169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEV  245 (885)
T ss_pred             cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHh
Confidence            1    3678999999999999999999999988754432  122221 2345555555 888999999999999999998


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh--HHHHHHHHcCCHHHHHHhcCCC-------------
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN--DKVQAVIEAGVYPRLVELLGHS-------------  462 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~~~~i~~L~~lL~~~-------------  462 (670)
                      .+.+-.....++++.+++..++.|++|...|+.....+++.+-  +.....++ .+++.|+.-+...             
T Consensus       246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD  324 (885)
T KOG2023|consen  246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEED  324 (885)
T ss_pred             cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCcccc
Confidence            8777777778999999999999999999999999998887642  11111221 4555555443311             


Q ss_pred             -------------------------------------------CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHH
Q 037562          463 -------------------------------------------SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLD  499 (670)
Q Consensus       463 -------------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~  499 (670)
                                                                 ++.+|+.++.+|..++.-..+.   +.. -++|.|-+
T Consensus       325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL~-~l~PlLk~  400 (885)
T KOG2023|consen  325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LLP-ILLPLLKE  400 (885)
T ss_pred             ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HHH-HHHHHHHH
Confidence                                                       1345665555555555422111   111 24566666


Q ss_pred             hhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH-HHHHHHHcC
Q 037562          500 MLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE-QIKHLVREG  578 (670)
Q Consensus       500 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~  578 (670)
                      .|.+. +..+|+.+..+++.++.+.-+....-+ ..++|.|+.+|.+..+-||..+||+|+..+.....+ ..+++..  
T Consensus       401 ~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--  476 (885)
T KOG2023|consen  401 HLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--  476 (885)
T ss_pred             HcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--
Confidence            67777 899999999999999886433221111 136889999999999999999999999887642111 1223222  


Q ss_pred             CcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          579 CVKPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       579 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++..|.+.+-+.+..|+++|+.++..+-+..
T Consensus       477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence            4555566666788999999999998865543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.42  E-value=5.7e-11  Score=119.77  Aligned_cols=370  Identities=13%  Similarity=0.103  Sum_probs=246.0

Q ss_pred             hccHHHHHHHhcCCCh--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 037562          237 LEILPAMVDGVWSDDN--SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS  314 (670)
Q Consensus       237 ~~~i~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  314 (670)
                      .|+++.+...+..++.  +.+.+.+..+.....++ .+....+.+.+.++.+++++.+++...+++...+++..+...++
T Consensus        50 ~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~  128 (678)
T KOG1293|consen   50 LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK  128 (678)
T ss_pred             hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence            4789999998886554  45545555555555555 77789999999999999999888756899999999999987432


Q ss_pred             hh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562          315 EN--TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLF  392 (670)
Q Consensus       315 ~~--~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~  392 (670)
                      ..  ........+++.+..++..+.......-+....+++.. +..+....+.|+.+.+--++ ...+..++..|..+++
T Consensus       129 ~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~s  206 (678)
T KOG1293|consen  129 YQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAALLCLS  206 (678)
T ss_pred             ccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHHHHhh
Confidence            21  12222334555555555434444444444555555544 35566666666555444443 5556778888888888


Q ss_pred             ---hhhcCCCCCChhhh-----hhhHH--HHHHhhccCChhHHHHHHHHHHHhccCChHH--------------------
Q 037562          393 ---NFCRGKPQPPFNQV-----RPALP--VLAQLIRSNDEEVLTDACWALSYLSDGTNDK--------------------  442 (670)
Q Consensus       393 ---~l~~~~~~~~~~~~-----~~~i~--~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~--------------------  442 (670)
                         ++..+++.......     .++.+  .+.+++++++..-+..++.++.++...+.+.                    
T Consensus       207 r~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~  286 (678)
T KOG1293|consen  207 RGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQY  286 (678)
T ss_pred             ccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHH
Confidence               66666544433322     33334  3445555555555555555555544332000                    


Q ss_pred             -------------------------------HHHHHHcCCHHHHHHhc--------------------------------
Q 037562          443 -------------------------------VQAVIEAGVYPRLVELL--------------------------------  459 (670)
Q Consensus       443 -------------------------------~~~~~~~~~i~~L~~lL--------------------------------  459 (670)
                                                     .....+....+.+..++                                
T Consensus       287 ~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~  366 (678)
T KOG1293|consen  287 NCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLE  366 (678)
T ss_pred             hhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc
Confidence                                           00000011111111111                                


Q ss_pred             --------------------CCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          460 --------------------GHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       460 --------------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                                          ...+..++.+|+.++.+++..-......+-...+..++++++..+ +..++..+.++++|
T Consensus       367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~N  445 (678)
T KOG1293|consen  367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICN  445 (678)
T ss_pred             hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHH
Confidence                                123445667777777777653332222234557889999999888 99999999999999


Q ss_pred             hhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHH
Q 037562          520 ITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCL  599 (670)
Q Consensus       520 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  599 (670)
                      +..........++..|+|+.+...+.+.++.++..+.|+|.++...++......+...=.-..+..+..++++.|++.++
T Consensus       446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f  525 (678)
T KOG1293|consen  446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF  525 (678)
T ss_pred             HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence            99977778889999999999999999999999999999999999986666666656555667788888999999999999


Q ss_pred             HHHHHHHHhhh
Q 037562          600 EGLENILKVGV  610 (670)
Q Consensus       600 ~~l~~l~~~~~  610 (670)
                      ..+.|+.....
T Consensus       526 qllRNl~c~~~  536 (678)
T KOG1293|consen  526 QLLRNLTCNSR  536 (678)
T ss_pred             HHHHHhhcCcH
Confidence            99999877643

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=9.8e-12  Score=124.68  Aligned_cols=321  Identities=16%  Similarity=0.186  Sum_probs=215.3

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc----CChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC
Q 037562          324 GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ----GALIPLLAELNENANLSMLRTATWTLFNFCRGKP  399 (670)
Q Consensus       324 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~----~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~  399 (670)
                      .++|.|+.+|.+++....+.|..+|..+|.+++..-+.-...    -.+|.++++. ++.++.+|..|..++..+.-..+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence            468999999999999999999999999998876533221111    1367778887 77899999999999998887765


Q ss_pred             CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562          400 QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK  479 (670)
Q Consensus       400 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  479 (670)
                      ..-.......+..+..+-.+.+++||..++.++..+.+..++.....+. ++++.++...++.+++|...||.....++.
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            5555566788888888888889999999999999998776655444443 788889999999999999999999999987


Q ss_pred             CCchhhHHHH--hCCChHHHHHhhccCCchhH-HH---------------------------------------------
Q 037562          480 GDDFQTQCII--NCGALPYFLDMLVHNHEESI-KK---------------------------------------------  511 (670)
Q Consensus       480 ~~~~~~~~l~--~~~~~~~L~~~l~~~~~~~v-~~---------------------------------------------  511 (670)
                      .. .....+.  -..++|.|++-+..+++..+ ..                                             
T Consensus       286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD  364 (885)
T KOG2023|consen  286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD  364 (885)
T ss_pred             Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence            54 2122111  22456666655433210000 00                                             


Q ss_pred             -HHHHHHHHhhcCCHHHHHHHHhcCCh----HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562          512 -EVSWIISNITCGNREQIQAVIDSGLI----GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL  586 (670)
Q Consensus       512 -~a~~~L~~l~~~~~~~~~~l~~~~~i----~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  586 (670)
                       ..-|-|+..++..-+....+....++    |.|-+.|.+++..+|+.++.|++.++..+......++-  ..++.|+++
T Consensus       365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~  442 (885)
T KOG2023|consen  365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSL  442 (885)
T ss_pred             ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHH
Confidence             00133333322222222222333344    44444555778899999999999999875444444433  268999999


Q ss_pred             ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562          587 LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWS  662 (670)
Q Consensus       587 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~  662 (670)
                      ++++.+-||.-.+|.|+++...--...       ....+...+      ..+-.-.-+.+..|++.|-.+..++-+
T Consensus       443 L~DKkplVRsITCWTLsRys~wv~~~~-------~~~~f~pvL------~~ll~~llD~NK~VQEAAcsAfAtleE  505 (885)
T KOG2023|consen  443 LDDKKPLVRSITCWTLSRYSKWVVQDS-------RDEYFKPVL------EGLLRRLLDSNKKVQEAACSAFATLEE  505 (885)
T ss_pred             hccCccceeeeeeeeHhhhhhhHhcCC-------hHhhhHHHH------HHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            999999999999999988754332211       111122222      222222345778899988777766543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.41  E-value=2.8e-10  Score=113.79  Aligned_cols=350  Identities=13%  Similarity=0.123  Sum_probs=233.2

Q ss_pred             ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc-----CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562          238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-----GVVPRFVEFLMRQDYPQLQFKAAWALTNIAS  311 (670)
Q Consensus       238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  311 (670)
                      .....+++.+. ..+.++....+..+..+.... +.....+.+.     +....++.+|..++ ..++..|+.+++.+..
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~  130 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHh
Confidence            44677777776 466788888888888887764 3444455543     46778888998888 7999999999999987


Q ss_pred             CChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC-ChhHHHHHHH
Q 037562          312 GTSENTKVVIDHGAVPIFVKLLASP-SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA-NLSMLRTATW  389 (670)
Q Consensus       312 ~~~~~~~~i~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~-~~~~~~~a~~  389 (670)
                      .++.........-.++.+...++++ +...+..|+.+|..+.... ..|..+.+.++++.|+..+.... +.+++..++.
T Consensus       131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll  209 (429)
T cd00256         131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF  209 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence            4433221111111334555666653 4777888899999988654 57888888889999999996655 6688999999


Q ss_pred             HHHhhhcCCCCCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHcCCHHHHHHhcCC-
Q 037562          390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGT------NDKVQAVIEAGVYPRLVELLGH-  461 (670)
Q Consensus       390 ~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~------~~~~~~~~~~~~i~~L~~lL~~-  461 (670)
                      +++-++...+........+.++.++.+++.. .+.+.+-++.++.|+...+      ......+++.|+.+.+..+... 
T Consensus       210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk  289 (429)
T cd00256         210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK  289 (429)
T ss_pred             HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence            9999998865333344478999999999865 5889999999999998643      1233446666665544444433 


Q ss_pred             -CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC---chhHHHHHHHHHHHhhcCCHHHHHHHHhcC--
Q 037562          462 -SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH---EESIKKEVSWIISNITCGNREQIQAVIDSG--  535 (670)
Q Consensus       462 -~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~--  535 (670)
                       .|+++... +..+.......      +-+..-++....=+.++.   +|.-+.+..|         .++...+-+.+  
T Consensus       290 ~~DedL~ed-l~~L~e~L~~~------~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW---------~EN~~kf~~~~~~  353 (429)
T cd00256         290 YDDEDLTDD-LKFLTEELKNS------VQDLSSFDEYKSELRSGRLHWSPVHKSEKFW---------RENADRLNEKNYE  353 (429)
T ss_pred             CCcHHHHHH-HHHHHHHHHHH------HHHcCCHHHHHHHHhcCCccCCCCCCCchHH---------HHHHHHHHhcchH
Confidence             34443332 22222221100      001111111111111110   1111111222         12333344333  


Q ss_pred             ChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          536 LIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       536 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                      ++..|+++++ +.|+.+..-||.-++.++.. .|..+..+-+.|+-..+++++.++|++|+..|+.++..++-
T Consensus       354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~-~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         354 LLKILIHLLETSVDPIILAVACHDIGEYVRH-YPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHHHHHHHHhcCCCcceeehhhhhHHHHHHH-CccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4778899986 66889999999999999998 56777777789999999999999999999999999998863

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.37  E-value=1.5e-11  Score=104.07  Aligned_cols=119  Identities=34%  Similarity=0.580  Sum_probs=110.3

Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 037562          276 EVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS  355 (670)
Q Consensus       276 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  355 (670)
                      .+++.|+++.+++++.+++ ++++..+++++++++..+++....+++.|+++.+++++.++++.++..|+++|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678899999999999988 899999999999999977999999999999999999999999999999999999999888


Q ss_pred             chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                      +..+..+.+.|+++.++..+ ++.+..+++.++++|.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77788888999999999999 66688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PTZ00429 beta-adaptin; Provisional

Probab=99.37  E-value=3.4e-09  Score=114.56  Aligned_cols=370  Identities=12%  Similarity=0.088  Sum_probs=237.0

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..++.+++.+.+++..++.-..-.+.+.+... ++ ...+    +++.+.+-+.+++ +.+|..|++.++++-.  ++..
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pe-lalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~  138 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PE-KALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL  138 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hH-HHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence            34778888888889999988888888886542 22 1111    4677788888888 9999999999999865  3433


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      +.     +++.+.+.+.+.++.||..|+.++.++...+++   .+.+.+.++.+..++ .+.++.|+.+|+.+|..+...
T Consensus       139 e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        139 EY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence            33     356778888999999999999999999866653   344556778888877 788999999999999999876


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                      .+. ......+.+..+...+..-++-.+..++.+|.......+...     ..++..+...|++.++.|...|++++.++
T Consensus       210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            543 344456667777777777788888888888876543222222     25677888999999999999999999999


Q ss_pred             hcCC-chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH-------------------------
Q 037562          478 VKGD-DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV-------------------------  531 (670)
Q Consensus       478 ~~~~-~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-------------------------  531 (670)
                      .... +.....+. ..+...++.++ ++ +++++..+...+.-+....+.....-                         
T Consensus       284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L  360 (746)
T PTZ00429        284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL  360 (746)
T ss_pred             cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence            7642 22222111 12334555553 44 67888888777766655433321110                         


Q ss_pred             Hhc----CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          532 IDS----GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       532 ~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                      .+.    .++..|.....+.+.+++..++.+++.++... +....     .++..|+++++.... +...++.++..+++
T Consensus       361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilr  433 (746)
T PTZ00429        361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVR  433 (746)
T ss_pred             cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHH
Confidence            000    12233333333445566666666666666532 22222     245666666654332 33345555555554


Q ss_pred             hhhhhhccCCCCCCccHHHHHHHHhchHHHHHH-h--hcCCCHHHHHHHHHHHHHhc
Q 037562          608 VGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIEN-L--QSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-L--~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ..+.            .+        .+..|.. +  ..-.+++.+....|+|.+|-
T Consensus       434 kyP~------------~~--------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~  470 (746)
T PTZ00429        434 KYPE------------LL--------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYC  470 (746)
T ss_pred             HCcc------------HH--------HHHHHHHhhcccccccHHHHHHHHHHHHhhH
Confidence            3221            00        1222221 1  23356677777788888874

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.36  E-value=5.5e-10  Score=121.01  Aligned_cols=357  Identities=18%  Similarity=0.193  Sum_probs=245.0

Q ss_pred             HHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562          242 AMVDGVWSD--DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV  319 (670)
Q Consensus       242 ~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  319 (670)
                      .+.+.+.+.  +...+..++..+..+...+ .+.      ..+.+.+++++.+.+ ...+..+-.++..+...+++....
T Consensus         8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l   79 (526)
T PF01602_consen    8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL   79 (526)
T ss_dssp             HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence            344444444  6667777777666554433 221      147888899999777 899999999999998866663333


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC
Q 037562          320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP  399 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~  399 (670)
                           ++..+.+-+.++++.++..|++++++++  .++..+.     .++.+.+.+ .++++.+|+.|+.++..+....|
T Consensus        80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p  146 (526)
T PF01602_consen   80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP  146 (526)
T ss_dssp             -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred             -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence                 3678888899999999999999999997  3333333     367777777 78889999999999999998754


Q ss_pred             CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562          400 QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK  479 (670)
Q Consensus       400 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  479 (670)
                      ...  ... .++.+.+++.+.|+.++..|+.++..+ ..++.....+. ...+..+..++...++-.+..+++++..++.
T Consensus       147 ~~~--~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  147 DLV--EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             CCH--HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HHH--HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            321  112 689999999999999999999999999 32332211122 2455667777778888889999999998887


Q ss_pred             CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHH
Q 037562          480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAI  559 (670)
Q Consensus       480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  559 (670)
                      ..+.....   ..+++.+..++++. ++.|..+++.++..+... +.     .-..+++.|..++.+++++++..++.+|
T Consensus       222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence            65544411   34677888888888 899999999999988553 22     2234678899999988999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHH
Q 037562          560 SNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIE  639 (670)
Q Consensus       560 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~  639 (670)
                      ..++... +..    +. +....+..+..+++..++..++.++..+......              ..      .++.|.
T Consensus       292 ~~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~--------------~~------Il~eL~  345 (526)
T PF01602_consen  292 SQLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV--------------KE------ILDELL  345 (526)
T ss_dssp             HHHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH--------------HH------HHHHHH
T ss_pred             HHhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhcccccch--------------hh------HHHHHH
Confidence            9998863 222    11 1222233333488899999999999888753321              11      134444


Q ss_pred             Hhh-cCCCHHHHHHHHHHHHHh
Q 037562          640 NLQ-SHDDNGISEKAVEILETY  660 (670)
Q Consensus       640 ~L~-~~~~~~v~~~a~~~l~~~  660 (670)
                      ... ...+++++..+.+.|..+
T Consensus       346 ~~l~~~~d~~~~~~~i~~I~~l  367 (526)
T PF01602_consen  346 KYLSELSDPDFRRELIKAIGDL  367 (526)
T ss_dssp             HHHHHC--HHHHHHHHHHHHHH
T ss_pred             HHHHhccchhhhhhHHHHHHHH
Confidence            444 444666666666555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=3.3e-10  Score=115.89  Aligned_cols=355  Identities=17%  Similarity=0.184  Sum_probs=250.9

Q ss_pred             hhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC
Q 037562          204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS--DDNSLQLEATTLFINLLSFDRSPPIDEVIQSG  281 (670)
Q Consensus       204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g  281 (670)
                      .+++-.++++..++++-++.+...       +....+..++..+++  .+..++..|+.+|.+-....+.....+.-.+-
T Consensus       145 ~~k~~slealGyice~i~pevl~~-------~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~  217 (859)
T KOG1241|consen  145 MVKESSLEALGYICEDIDPEVLEQ-------QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY  217 (859)
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHH-------HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence            488888999999999988873333       334667888888875  44679999999999887664323333444455


Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC---  358 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---  358 (670)
                      ++...++.-++++ .+++.+|..||..+..-..+.....+....+..-+.-+++++++|.-+++...+++|...-+.   
T Consensus       218 iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e  296 (859)
T KOG1241|consen  218 IMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIE  296 (859)
T ss_pred             eeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777788888888 899999999999999877777777777677778888889999999999999999998432110   


Q ss_pred             -------------HHH--HHhcCChHHHHHHhccc------CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh
Q 037562          359 -------------RDL--VLSQGALIPLLAELNEN------ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI  417 (670)
Q Consensus       359 -------------~~~--i~~~~~i~~Ll~~l~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL  417 (670)
                                   ...  -.-.+++|.|+++|.+.      ++...-..|..||.-++.....   .++..++|.+-.-+
T Consensus       297 ~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i  373 (859)
T KOG1241|consen  297 YGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENI  373 (859)
T ss_pred             HHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhc
Confidence                         000  00124577888888541      1224455555565555543211   23347778888888


Q ss_pred             ccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH-HHHhCCChHH
Q 037562          418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ-CIINCGALPY  496 (670)
Q Consensus       418 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~~~~~~  496 (670)
                      +++|-.-++.+..+++.+..+.+...-.-+-.++++.++.++.++.--++..+.|+++.++...++.+. .......++.
T Consensus       374 ~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~  453 (859)
T KOG1241|consen  374 QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSA  453 (859)
T ss_pred             CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHH
Confidence            899999999999999999988776655555568999999999988888999999999999987664322 2234456777


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHhhcCCHHHH---------HHHHhcCChHHHHHHhhc---CChhHHHHHHHHHHHhcC
Q 037562          497 FLDMLVHNHEESIKKEVSWIISNITCGNREQI---------QAVIDSGLIGPIVNLLQN---TEFDTKKEAAWAISNATK  564 (670)
Q Consensus       497 L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~---------~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~  564 (670)
                      ++.-|++.  |.+...++|++.+++.+..+..         ..+.+ .++..|+..-+.   .+...|..|..||+.+..
T Consensus       454 l~~gL~De--Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk  530 (859)
T KOG1241|consen  454 LLEGLNDE--PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIK  530 (859)
T ss_pred             HHHHhhhC--chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            77777655  8899999999999985211110         00111 134444444332   346899999999999999


Q ss_pred             CCCHHHHH
Q 037562          565 FGTHEQIK  572 (670)
Q Consensus       565 ~~~~~~~~  572 (670)
                      ........
T Consensus       531 ~st~~vy~  538 (859)
T KOG1241|consen  531 NSTDDVYP  538 (859)
T ss_pred             cCcHHHHH
Confidence            85544433

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.32  E-value=3e-11  Score=102.18  Aligned_cols=118  Identities=31%  Similarity=0.519  Sum_probs=110.0

Q ss_pred             HHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH
Q 037562          446 VIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR  525 (670)
Q Consensus       446 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~  525 (670)
                      +.+.|+++.++.++.++++.++..+++++++++...+.....+++.|+++.+++++.++ ++.++..|+|++++++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998788888888999999999999998 99999999999999999887


Q ss_pred             HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          526 EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       526 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                      .....+.+.|+++.++..+.+.+.+++..|+++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            888888899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PTZ00429 beta-adaptin; Provisional

Probab=99.30  E-value=3e-08  Score=107.28  Aligned_cols=294  Identities=15%  Similarity=0.081  Sum_probs=202.9

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHH-HHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLF-INLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      |.+..+.+.|.+.+...+..|++.+ ..++.+  .+..      .+++.+++++.+.+ .+++..+-..+.+++...++.
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G--~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pel  102 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG--RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEK  102 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHH
Confidence            3467788888888887788888754 444444  2221      25677788888888 899999999999998866554


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                      .-.     ++..+.+-+.++++.+|..|+++++++-.  +...+.     .+.++.+.+ .+.++.||+.|+.++..+..
T Consensus       103 alL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~  169 (746)
T PTZ00429        103 ALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFH  169 (746)
T ss_pred             HHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHh
Confidence            322     36788888999999999999999999842  222222     355666777 78899999999999999987


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      ..+.  .....+.++.+..++.+.|+.|+.+|+.+|..+....+....  ...+.+..++..+..-++-.+...+.+|..
T Consensus       170 ~~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~  245 (746)
T PTZ00429        170 DDMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAA  245 (746)
T ss_pred             hCcc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence            6553  223356788899999999999999999999999865543322  223556677777766666566666666644


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEA  555 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  555 (670)
                      ..   +......  ..++..+...+++. ++.|.-+|+.++.++... .++....+.. .+-+.++.+ .+++++++..+
T Consensus       246 y~---P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyva  317 (746)
T PTZ00429        246 QR---PSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIV  317 (746)
T ss_pred             cC---CCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHH
Confidence            32   2211111  24677788888888 899999999999988653 2332222221 123445554 34567777777


Q ss_pred             HHHHHHhcCC
Q 037562          556 AWAISNATKF  565 (670)
Q Consensus       556 ~~aL~~l~~~  565 (670)
                      +..+..+...
T Consensus       318 Lr~I~~i~~~  327 (746)
T PTZ00429        318 CKNIHALLVI  327 (746)
T ss_pred             HHHHHHHHHH
Confidence            7666665553

>PLN03210 Resistant to P

Probab=99.29  E-value=6.7e-12  Score=146.15  Aligned_cols=164  Identities=20%  Similarity=0.287  Sum_probs=122.4

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      ..+|+.|++++|..++.++.  ...+++|+.|++.+|..+..+|..+..+++|+.|++++|.+++.+   +...++++|+
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L---p~~i~l~sL~  707 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL---PTGINLKSLY  707 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc---CCcCCCCCCC
Confidence            34889999998888888875  457899999999999999999988888999999999999999887   2333788999


Q ss_pred             eeccccccccceeccccc----------c--ccccc------------------------------cccccccccccccc
Q 037562          101 YMEIESCDKITEIVLVDD----------V--VAQDE------------------------------VITFRELKELNLLQ  138 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~~~~----------~--~~~~~------------------------------~~~~~~L~~L~l~~  138 (670)
                      .|.+++|..++.++....          .  ..+..                              ...+|+|+.|.+.+
T Consensus       708 ~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~  787 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD  787 (1153)
T ss_pred             EEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence            999999987765532100          0  00000                              01135677777777


Q ss_pred             cccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeeccCC
Q 037562          139 MQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWDGE  192 (670)
Q Consensus       139 ~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~~~  192 (670)
                      |+.+..++..  ...+++|+.|++.+|++++.+|.+. .+++|+.|++++++.-
T Consensus       788 n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        788 IPSLVELPSS--IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL  838 (1153)
T ss_pred             CCCccccChh--hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence            7777766553  4568889999999999999888876 5788999988877654

syringae 6; Provisional

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.28  E-value=1.6e-09  Score=108.40  Aligned_cols=345  Identities=15%  Similarity=0.163  Sum_probs=229.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC-----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH-----GAVPIFVKLLASPSVDVRKQTVWALGNVAGDS  355 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  355 (670)
                      ..+..++.++.....+++..++...+..+...++.....+.+.     .....++.+|..++..+...|+..|..+....
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            3567788888776658999999999999998777777777764     56788888999999999999999999998554


Q ss_pred             chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHH
Q 037562          356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALS  433 (670)
Q Consensus       356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~  433 (670)
                      +.........-.+..+...+....+...+..++.++..+...++.+......++++.|+.+|+..  +.+++..++-|++
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            32111110000223444555333456777888899999998876665555567899999999753  5689999999999


Q ss_pred             HhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCc------hhhHHHHhCCChHHHHHhhccCC-
Q 037562          434 YLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDD------FQTQCIINCGALPYFLDMLVHNH-  505 (670)
Q Consensus       434 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~~~~L~~~l~~~~-  505 (670)
                      -++...+ ........++++.++.+++. ..+++..-++.++.|+...+.      .....++..|+.+ +++.|.... 
T Consensus       213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~  290 (429)
T cd00256         213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKY  290 (429)
T ss_pred             HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCC
Confidence            9987654 44456667999999999987 466788999999999987431      1233445555555 444444322 


Q ss_pred             -chhHHHHHHHHHHHhhc------CCHHHHHHHHhcCChHHHHHHh-hcCCh-hHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037562          506 -EESIKKEVSWIISNITC------GNREQIQAVIDSGLIGPIVNLL-QNTEF-DTKKEAAWAISNATKFGTHEQIKHLVR  576 (670)
Q Consensus       506 -~~~v~~~a~~~L~~l~~------~~~~~~~~l~~~~~i~~L~~ll-~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~  576 (670)
                       |+++.......-..+..      .-+++..++.. |-+.    .- -+.++ =-++                +...|-+
T Consensus       291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s-g~L~----WSp~H~se~FW~E----------------N~~kf~~  349 (429)
T cd00256         291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS-GRLH----WSPVHKSEKFWRE----------------NADRLNE  349 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc-CCcc----CCCCCCCchHHHH----------------HHHHHHh
Confidence             55544332222111110      01111111111 1100    00 00011 1122                2223322


Q ss_pred             cC--CcHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562          577 EG--CVKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA  653 (670)
Q Consensus       577 ~~--~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a  653 (670)
                      .+  ++..|++++ ++.|+.+...|+.=++.+++..+.             .+..+++.|+-+.+-+|++|+|++|+..|
T Consensus       350 ~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eA  416 (429)
T cd00256         350 KNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEA  416 (429)
T ss_pred             cchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence            22  467888888 466788888888889998887654             35678899999999999999999999999


Q ss_pred             HHHHHHhc
Q 037562          654 VEILETYW  661 (670)
Q Consensus       654 ~~~l~~~~  661 (670)
                      ...++++.
T Consensus       417 L~avQklm  424 (429)
T cd00256         417 LLAVQKLM  424 (429)
T ss_pred             HHHHHHHH
Confidence            99999875

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1.6e-10  Score=118.15  Aligned_cols=409  Identities=14%  Similarity=0.153  Sum_probs=252.8

Q ss_pred             cceeeccchhhhHHHHhhcchhhhhhccccCCCcccc---------chhhhhhccHHHHHHHhcCCChH-HHHHHHHHHH
Q 037562          194 HWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLS---------LNLQSKLEILPAMVDGVWSDDNS-LQLEATTLFI  263 (670)
Q Consensus       194 ~~~~~~~~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~l~~~l~~~~~~-~~~~a~~~L~  263 (670)
                      ++|.  .+..++|+..-.-...-+....++....+++         -|....++.++.++.....+.+. ++..++.+++
T Consensus        78 qRWl--~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealG  155 (859)
T KOG1241|consen   78 QRWL--QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALG  155 (859)
T ss_pred             HHHH--cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence            4444  4555555544444444444444444333333         22344456677777777665554 8889999999


Q ss_pred             HHhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCCh-hhHHHHHhCCChHHHHHhhCCCCHHHH
Q 037562          264 NLLSFDRSPPIDEVIQSGVVPRFVEFLMR-QDYPQLQFKAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLASPSVDVR  341 (670)
Q Consensus       264 ~l~~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~L~~lL~~~~~~v~  341 (670)
                      -+..+-..+ .-.--.+.++..++.-... +.+..+|..|..+|.+-..-.. .+....-..-+++..++.-.+++.+++
T Consensus       156 yice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~  234 (859)
T KOG1241|consen  156 YICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQ  234 (859)
T ss_pred             HHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHH
Confidence            887664222 2122234466666665543 3337999999999988543111 111111122345677778888999999


Q ss_pred             HHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC-------------C--Chh--
Q 037562          342 KQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ-------------P--PFN--  404 (670)
Q Consensus       342 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-------------~--~~~--  404 (670)
                      ..|..+|..+..-.-+.-..-.....+..-+..+ .++++++.-++....+++|...-.             .  ...  
T Consensus       235 ~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa  313 (859)
T KOG1241|consen  235 VAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFA  313 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHH
Confidence            9999999998743322222222222344455566 577888888898888888754311             1  011  


Q ss_pred             --hhhhhHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHH
Q 037562          405 --QVRPALPVLAQLIRSN-------DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR  475 (670)
Q Consensus       405 --~~~~~i~~L~~lL~~~-------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  475 (670)
                        ....++|.|+++|...       +-.....|-.||.-+++...+.   ++. .+++.+-.-++++++.-|..|+.+++
T Consensus       314 ~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~pdwr~reaavmAFG  389 (859)
T KOG1241|consen  314 RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNPDWRNREAAVMAFG  389 (859)
T ss_pred             HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCcchhhhhHHHHHHH
Confidence              1246788888888642       2345666666666655332211   222 45666666788899999999999999


Q ss_pred             HhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHH-HHhcCChHHHHHHhhcCChhHHHH
Q 037562          476 NIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA-VIDSGLIGPIVNLLQNTEFDTKKE  554 (670)
Q Consensus       476 ~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-l~~~~~i~~L~~ll~~~~~~v~~~  554 (670)
                      .+..+.......-+..++++.++.++.++ .-.++..++|+++.++...++.+.. ......++.++.-+ ...+.+..+
T Consensus       390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N  467 (859)
T KOG1241|consen  390 SILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASN  467 (859)
T ss_pred             hhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHH
Confidence            99988776665556678999999999977 8899999999999998865543211 11233445555544 347899999


Q ss_pred             HHHHHHHhcCCCCHH--------HHHHHHHcCCcHHHHhhccC---CChHHHHHHHHHHHHHHHhhhhhh
Q 037562          555 AAWAISNATKFGTHE--------QIKHLVREGCVKPLCDLLLC---ADPKIVTVCLEGLENILKVGVAEM  613 (670)
Q Consensus       555 a~~aL~~l~~~~~~~--------~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~l~~l~~~~~~~~  613 (670)
                      ++|++.+++......        ....+.+ .++..|+..-+.   .+..+|..+..+|..++...++..
T Consensus       468 ~CWAf~~Laea~~eA~~s~~qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v  536 (859)
T KOG1241|consen  468 VCWAFISLAEAAYEAAVSNGQTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV  536 (859)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence            999999998532000        0000111 123333333332   445789999999999988766544

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=4.5e-09  Score=108.85  Aligned_cols=343  Identities=16%  Similarity=0.179  Sum_probs=244.7

Q ss_pred             ccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          238 EILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       238 ~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      ..+|.|++.+++ .+.++...|+++|..+...- +.....+++.++||.|++-|..-..-++.++++.+|..|+.   ..
T Consensus       211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H  286 (1051)
T KOG0168|consen  211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RH  286 (1051)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hc
Confidence            347899999985 56899999999999997664 56677888999999999877655447999999999999987   44


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC  395 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  395 (670)
                      -..++++|++...+.++.--+..+++.|+.+..|+|..- ++--..+.+  ++|.|..++ ...|......++-++..++
T Consensus       287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence            567889999999999998888899999999999999532 222234444  688888888 7777788899999999988


Q ss_pred             cCCCCCC----hhhhhhhHHHHHHhhccCC----hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc---
Q 037562          396 RGKPQPP----FNQVRPALPVLAQLIRSND----EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS---  464 (670)
Q Consensus       396 ~~~~~~~----~~~~~~~i~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---  464 (670)
                      .......    .....+.+....+++.-.+    ..+-...++.+..++.+.+.....+.+.++...+..+|...+.   
T Consensus       364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n  443 (1051)
T KOG0168|consen  364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN  443 (1051)
T ss_pred             HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence            7762221    1222677777777776442    3455566777888887777666767777777777776653110   


Q ss_pred             -c----c-h------hHHH---------------------------------------------------HHHHHh----
Q 037562          465 -S----V-L------TPAL---------------------------------------------------RTIRNI----  477 (670)
Q Consensus       465 -~----v-~------~~a~---------------------------------------------------~~L~~l----  477 (670)
                       .    + +      +...                                                   +.+..+    
T Consensus       444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~  523 (1051)
T KOG0168|consen  444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT  523 (1051)
T ss_pred             cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence             0    0 0      0000                                                   011100    


Q ss_pred             ------------------hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhc-CCh
Q 037562          478 ------------------VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDS-GLI  537 (670)
Q Consensus       478 ------------------~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~~i  537 (670)
                                        ..+.++..+.+. ...++.|+++..+.-++.||..+..+|..+.. .+.+.+..++.. .+-
T Consensus       524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS  602 (1051)
T KOG0168|consen  524 GTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS  602 (1051)
T ss_pred             ccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence                              000011111111 13678888888887799999999999999876 566777777654 455


Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc
Q 037562          538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL  588 (670)
Q Consensus       538 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  588 (670)
                      ..+-.++.++|..+..-|+...--++..-...+...|..+|++..+-++..
T Consensus       603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            566678888999988888888888877655667778888888888888775

>PLN03210 Resistant to P

Probab=99.19  E-value=6.2e-11  Score=138.18  Aligned_cols=158  Identities=20%  Similarity=0.273  Sum_probs=101.0

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccc-----------
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTS-----------   90 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-----------   90 (670)
                      .+|+.|.+.+|..+..+|.. ...+++|+.|++++|.++..+|... .+++|+.|.+++|..++.+...           
T Consensus       657 ~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~  734 (1153)
T PLN03210        657 TNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE  734 (1153)
T ss_pred             CcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence            48999999999999888865 4678899999999999998887654 6788888888888766543100           


Q ss_pred             ------hhhhccc-------------------------------ccceeccccccccceecccccccccccccccccccc
Q 037562           91 ------SIAKTLV-------------------------------RLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKE  133 (670)
Q Consensus        91 ------~~~~~l~-------------------------------~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~  133 (670)
                            +....++                               +|+.|++++|+.+.+++        .....+++|+.
T Consensus       735 n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--------~si~~L~~L~~  806 (1153)
T PLN03210        735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--------SSIQNLHKLEH  806 (1153)
T ss_pred             CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC--------hhhhCCCCCCE
Confidence                  0000122                               33333333333333322        12345677777


Q ss_pred             ccccccccccccccCCcccCCCCccEEeEecCCCcccccc--------------------CCcCCCCccceeeeeccCC
Q 037562          134 LNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG--------------------GELSTPNLHKVQLSRWDGE  192 (670)
Q Consensus       134 L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~--------------------~~~~~~~L~~l~i~~~~~~  192 (670)
                      |.|.+|++|+.++.+   ..+++|+.|++++|.+++.+|.                    .+..+++|+.|++++|+.-
T Consensus       807 L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        807 LEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             EECCCCCCcCeeCCC---CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence            777777777777653   2467777777777776665543                    2223566777776665543

syringae 6; Provisional

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.15  E-value=2.6e-08  Score=95.88  Aligned_cols=349  Identities=14%  Similarity=0.121  Sum_probs=231.7

Q ss_pred             ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHH-------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 037562          238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVI-------QSGVVPRFVEFLMRQDYPQLQFKAAWALTNI  309 (670)
Q Consensus       238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l  309 (670)
                      ..+..++..+. ...++....++..+..+.+.+  .....++       .......++.++...+ .-+...+.++++.+
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~l  141 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKL  141 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence            45677888886 355677888888888887764  2222222       2234677889999988 68888899999998


Q ss_pred             cCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh-cccCChhHHHHH
Q 037562          310 ASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL-NENANLSMLRTA  387 (670)
Q Consensus       310 ~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l-~~~~~~~~~~~a  387 (670)
                      +.-.......--..-....+...+.+ .+.+....|+++|-.+...+ +.|..+...+++..++..+ ....+.+++.+.
T Consensus       142 a~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs  220 (442)
T KOG2759|consen  142 ACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQS  220 (442)
T ss_pred             HHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence            87332211110000012334444544 66677778888999888664 5688888888888888888 555677899999


Q ss_pred             HHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHcCCHHHHHHhcC
Q 037562          388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTN------DKVQAVIEAGVYPRLVELLG  460 (670)
Q Consensus       388 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~------~~~~~~~~~~~i~~L~~lL~  460 (670)
                      +.+++.|+.+++........+.++.|..++++. .+.|..-++.++.|+....+      .....++..++.+.+-.+-.
T Consensus       221 ifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~  300 (442)
T KOG2759|consen  221 IFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE  300 (442)
T ss_pred             HHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence            999999998875555555578999999999865 67899999999999997764      33344666566555554444


Q ss_pred             C--CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC---chhHHHHHHHHHHHhhcCCHHHHHHHHhc-
Q 037562          461 H--SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH---EESIKKEVSWIISNITCGNREQIQAVIDS-  534 (670)
Q Consensus       461 ~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-  534 (670)
                      .  +|+++....-..-..+-.       .+-+...++...+=+.++.   +|.-+.+-.|         .++...+-+. 
T Consensus       301 rkysDEDL~~di~~L~e~L~~-------svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW---------~eNa~rlnenn  364 (442)
T KOG2759|consen  301 RKYSDEDLVDDIEFLTEKLKN-------SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW---------RENADRLNENN  364 (442)
T ss_pred             cCCCcHHHHHHHHHHHHHHHH-------HHHhhccHHHHHHHHHhCCcCCCccccccchH---------HHhHHHHhhcc
Confidence            3  344433322211111111       0001111111111111110   2222222222         2344445443 


Q ss_pred             -CChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          535 -GLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       535 -~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                       .++..|+.+|+ +.|+.+..-|+.-++..... .|+....+.+-|+-+.++++++++|++|+..|+.|+..++.
T Consensus       365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~-yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  365 YELLKILIKLLETSNDPIILCVACHDIGEYVRH-YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh-CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence             36889999999 45688999999999999998 78888888999999999999999999999999999998874

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.11  E-value=1.6e-08  Score=97.40  Aligned_cols=312  Identities=14%  Similarity=0.120  Sum_probs=219.8

Q ss_pred             hHHHHhhcchhhhhhccccCCCccccchhhhhhc-cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCH
Q 037562          205 IKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLE-ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV  283 (670)
Q Consensus       205 i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l  283 (670)
                      .-+..+-.+.++++..+++.+.-...  ..+.-. .-+.++..+..++.-+...+.+.+..+++.. ........-.-..
T Consensus        82 ~v~yvL~li~DmLs~d~sr~~lf~~~--a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~  158 (442)
T KOG2759|consen   82 TVQYVLTLIDDMLSEDRSRVDLFHDY--AHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYK  158 (442)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHH--HHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHH
Confidence            33444555667777777776433221  001112 2577888898888888888999999998765 2211110000012


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      ..+-..+++..+.+....|++||..+.. -++.|..++.++++..++..+.+  .+-.++.+.+.+++-++...+ ..+.
T Consensus       159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~  236 (442)
T KOG2759|consen  159 GFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEK  236 (442)
T ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHH
Confidence            3444556664436888999999999998 78999999999999999998843  667899999999999986654 4567


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC------hhhhhhhHHHHHHhhcc---CChhHHHHHHHHH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP------FNQVRPALPVLAQLIRS---NDEEVLTDACWAL  432 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~------~~~~~~~i~~L~~lL~~---~~~~v~~~al~~L  432 (670)
                      +...+.++.|...+..+..+.|.+-++.++.|++...+...      ..+..+.++..++.|..   +|+++....-..-
T Consensus       237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~  316 (442)
T KOG2759|consen  237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLT  316 (442)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            77888999999999888899999999999999998874322      22234455555666653   3555544433222


Q ss_pred             HHh-------ccCCh-----------------------HHHHHHHHc--CCHHHHHHhcCCCC-ccchhHHHHHHHHhhc
Q 037562          433 SYL-------SDGTN-----------------------DKVQAVIEA--GVYPRLVELLGHSS-SSVLTPALRTIRNIVK  479 (670)
Q Consensus       433 ~~l-------~~~~~-----------------------~~~~~~~~~--~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~  479 (670)
                      ..+       +..+.                       ++...+.+.  .++..|+.+|+.++ +.+..-||.=|+...+
T Consensus       317 e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr  396 (442)
T KOG2759|consen  317 EKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR  396 (442)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH
Confidence            222       11100                       111112221  37888999998754 7788889999999999


Q ss_pred             CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      ..|.....+.+.|+-+.++.+++++ +++||.+|..++..+..
T Consensus       397 ~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  397 HYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMV  438 (442)
T ss_pred             hCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHh
Confidence            9999999888999999999999999 99999999999988754

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=2.6e-07  Score=95.43  Aligned_cols=325  Identities=14%  Similarity=0.159  Sum_probs=239.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSP---  356 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~---  356 (670)
                      .|+.|+.-+.+..-.+-|..|++.|..++.   ++|..+.. .+++++++.|+.  .++++...++.++.++..++.   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            477888877776557889999999999987   77777664 557999998876  789999999999999986542   


Q ss_pred             ---h----------hHHH-HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh---hhhhhHHHHHHhhcc
Q 037562          357 ---R----------CRDL-VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN---QVRPALPVLAQLIRS  419 (670)
Q Consensus       357 ---~----------~~~~-i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~i~~L~~lL~~  419 (670)
                         .          ..+. +...+.|..++..+ ...|-.||..+...+.++....|.....   ....++..++.+|.+
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               1          1122 33346677777887 7778899999999999998877544332   226789999999999


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC---Cc-cchhHHHHHHHHhhcCCchhhHHHHhCCChH
Q 037562          420 NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS---SS-SVLTPALRTIRNIVKGDDFQTQCIINCGALP  495 (670)
Q Consensus       420 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~  495 (670)
                      ..+.+|..++-.|..++..++...+.+.-.+++..|..++...   +. -|...|+..|.|+..++......+.+.+.++
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            9999999999999999988876666666668999999999863   22 4788899999999999988888888999999


Q ss_pred             HHHHhhccCC--chh--------H--HHHHHHHHHHhhc-CC-----HHHHHHHHhcCChHHHHHHhhcC--ChhHHHHH
Q 037562          496 YFLDMLVHNH--EES--------I--KKEVSWIISNITC-GN-----REQIQAVIDSGLIGPIVNLLQNT--EFDTKKEA  555 (670)
Q Consensus       496 ~L~~~l~~~~--~~~--------v--~~~a~~~L~~l~~-~~-----~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a  555 (670)
                      .|.++|.-..  +.+        |  ...|..+++.+.. ++     ..+.+.+.+.+++..|..++.++  ..+++..+
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998875321  211        1  1345566666655 21     12234566788999999998866  36899999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHcCC----------cHHHHhhccC-CChHHHHHHHHHHHHHHHhhhhh
Q 037562          556 AWAISNATKFGTHEQIKHLVREGC----------VKPLCDLLLC-ADPKIVTVCLEGLENILKVGVAE  612 (670)
Q Consensus       556 ~~aL~~l~~~~~~~~~~~l~~~~~----------i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~  612 (670)
                      ..+++++... +......|.+-.+          +-.++.+..+ .....|.+++.++..++......
T Consensus       338 iitvAevVRg-n~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  338 IITVAEVVRG-NARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHh-chHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            9999999886 4444455554221          1123333333 44578889999998887765543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3.2e-08  Score=94.22  Aligned_cols=190  Identities=19%  Similarity=0.212  Sum_probs=160.6

Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHH
Q 037562          420 NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLD  499 (670)
Q Consensus       420 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~  499 (670)
                      .+.+-+..++.-|..++..-+ +...+...|++..++..+.+++..+|..|+++|+..+.+++.....+++.|+++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            356667777777777775433 5566888899999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc--CChhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 037562          500 MLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN--TEFDTKKEAAWAISNATKFGTHEQIKHLVRE  577 (670)
Q Consensus       500 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  577 (670)
                      .+.++.+..++..|.++++.+.+..+.....+...++...|.+++++  .+..++..|+..+..+... .......+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-~~s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-DKSDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-hhhhhhHHHHh
Confidence            99987677899999999999999988888899998899999999997  5678899999999999886 33344455667


Q ss_pred             CCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          578 GCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       578 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      +....+..+....+.++...++.++...+.....
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            7777788888888899999998888877665443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=2.9e-07  Score=94.18  Aligned_cols=217  Identities=18%  Similarity=0.192  Sum_probs=162.5

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV  319 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  319 (670)
                      -+.++.+|.+..+-++..|+..+.++...- ++..+     ..+|.|++-|.++| +.|+.+|+.+++.+|..+|++.- 
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence            467888889999999999999998875432 22211     25899999999999 99999999999999997777643 


Q ss_pred             HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh--hhc
Q 037562          320 VIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN--FCR  396 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~--l~~  396 (670)
                          ..-|.+.++|-+ .+.=+....+..+++|+--.|.....     .++++.+++....-..+...+..++..  ++.
T Consensus       218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                245778887765 33345556778888888777765554     488999999554444555544444332  333


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      +. ........-+++.|-.++.++|+.++.-++.+++.++...+...+.     .-+.++++|.+.|+.+|..|+..+.-
T Consensus       289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~g  362 (877)
T KOG1059|consen  289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYG  362 (877)
T ss_pred             CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHH
Confidence            22 2344555778889999999999999999999999999877766553     23678999999999999999999988


Q ss_pred             hhc
Q 037562          477 IVK  479 (670)
Q Consensus       477 l~~  479 (670)
                      +..
T Consensus       363 mVs  365 (877)
T KOG1059|consen  363 MVS  365 (877)
T ss_pred             Hhh
Confidence            875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=99.04  E-value=3.5e-08  Score=106.62  Aligned_cols=492  Identities=16%  Similarity=0.134  Sum_probs=256.7

Q ss_pred             cccEEEeccCcCcccccccc--------------cccCCCCcEEEEecCCCCcc-ccCC-Cccccccceeeecccccccc
Q 037562           23 EVKISEAYNCYRLENILIEE--------------SSVMNNLVILCVHCCDHLIN-LVPS-STSFQNLTNLVVSHCKRLKI   86 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~--------------~~~~~~L~~L~i~~c~~l~~-~~~~-~~~~~~L~~L~i~~c~~l~~   86 (670)
                      .|++|.++++...+......              ...-.+|++|+|+|-..+.. |+.. ...||+|++|.|.|-.--..
T Consensus        84 ~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~  163 (699)
T KOG3665|consen   84 DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND  163 (699)
T ss_pred             cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch
Confidence            57788888776554432211              02246889999988554422 2222 23589999999988643222


Q ss_pred             cccchhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562           87 VLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus        87 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      -| .....+||+|..|+|+++. ++.+.         ....+.+|+.|.+.+++=-..... ...+.+.+|+.|+|+.=.
T Consensus       164 dF-~~lc~sFpNL~sLDIS~Tn-I~nl~---------GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  164 DF-SQLCASFPNLRSLDISGTN-ISNLS---------GISRLKNLQVLSMRNLEFESYQDL-IDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             hH-HHHhhccCccceeecCCCC-ccCcH---------HHhccccHHHHhccCCCCCchhhH-HHHhcccCCCeeeccccc
Confidence            11 1334689999999999874 33331         223577777777776653332111 124568899999998654


Q ss_pred             Ccc------ccccCCcCCCCccceeeeeccCCccceeeccchhhhHHHHhhcchhhhhhc------cccCCCcccc----
Q 037562          167 NMK------IFSGGELSTPNLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQ------RSRISTPVLS----  230 (670)
Q Consensus       167 ~l~------~~p~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~i~~l~~~~l~~~~~~~------~~~~~~~~~~----  230 (670)
                      +..      .+-+....+|.|+.|+.++.          ++|..+-+-+++...++.+-.      ........-+    
T Consensus       232 ~~~~~~ii~qYlec~~~LpeLrfLDcSgT----------di~~~~le~ll~sH~~L~~i~~~~~~~~~~~~~~~i~~ln~  301 (699)
T KOG3665|consen  232 NNDDTKIIEQYLECGMVLPELRFLDCSGT----------DINEEILEELLNSHPNLQQIAALDCLALSAVSSTEIRVLNT  301 (699)
T ss_pred             cccchHHHHHHHHhcccCccccEEecCCc----------chhHHHHHHHHHhCccHhhhhhhhhhccccccccCceeeee
Confidence            432      11222334889999977632          233333333333332222222      1111110000    


Q ss_pred             chhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 037562          231 LNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIA  310 (670)
Q Consensus       231 ~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  310 (670)
                      .+.+..   +..+.....-..+.....++..+..+....  +.....--...+..++..++... ...+.....++..++
T Consensus       302 at~~s~---i~~L~~~~~l~r~~~v~~cl~~l~~~~~~~--~~~~~~~~~~~l~~i~~sm~~~~-s~~~i~~~~CL~~i~  375 (699)
T KOG3665|consen  302 ATLDSS---IQALTYYLNLKRPSEVSRCLNELLDLLKSL--DSTREYDISECLKLIINSMNTFS-SSNQIQGSACLIHIV  375 (699)
T ss_pred             cchhHH---HHHHHHHHHhcChHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHhcC-ChhhhhHHHHHHHHH
Confidence            111111   222222222233444445555555554421  11111112224555555555444 244555566666666


Q ss_pred             CCChhhHHHHHhCCChHHHHHhhCC------C-CHHHH------------------------------------------
Q 037562          311 SGTSENTKVVIDHGAVPIFVKLLAS------P-SVDVR------------------------------------------  341 (670)
Q Consensus       311 ~~~~~~~~~i~~~~~i~~L~~lL~~------~-~~~v~------------------------------------------  341 (670)
                      .+...........-++..++.....      . ...+.                                          
T Consensus       376 ~~~~~~l~~~~~~~~l~~LLn~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (699)
T KOG3665|consen  376 KHTKQRLSPLLVSLLLKVLLNLVEKLDTLDSNDELTLCNSIILLLSLLVSRRKLLSVLDHHEQDNIQQRLTVCLSISTAC  455 (699)
T ss_pred             HhhhhccChHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHhhcchhHH
Confidence            5332111111111112222222111      0 00000                                          


Q ss_pred             ---------------------------------HHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562          342 ---------------------------------KQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT  388 (670)
Q Consensus       342 ---------------------------------~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~  388 (670)
                                                       ..-..++++++...+..-..+.+.|++..+...+......+++..+.
T Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il  535 (699)
T KOG3665|consen  456 QVVSITKVNVGELGIVLTLLLRIKLRKIYWCDDVLEFTALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKIL  535 (699)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHH
Confidence                                             00011556777777777788889999999999997777888999999


Q ss_pred             HHHHhhhcCCCCCChhhhhhhHH--HHHHhhccCCh-hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc
Q 037562          389 WTLFNFCRGKPQPPFNQVRPALP--VLAQLIRSNDE-EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS  465 (670)
Q Consensus       389 ~~L~~l~~~~~~~~~~~~~~~i~--~L~~lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  465 (670)
                      ..+.+++...+..........+.  .+..++..-+. +.-..++..++.+....++...                   ..
T Consensus       536 ~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~~~~~~~-------------------~~  596 (699)
T KOG3665|consen  536 GLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSDSEKTTE-------------------CV  596 (699)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhCCCcCcc-------------------cc
Confidence            99999998764443333322222  33334444343 7777777777777655432111                   11


Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhCCChHH-HHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHh
Q 037562          466 VLTPALRTIRNIVKGDDFQTQCIINCGALPY-FLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL  544 (670)
Q Consensus       466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~-L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll  544 (670)
                      .+..+...+......-+.......-...+.. +..++.....+..+..|.|++.+++...+++.+...+.++++.+.+.-
T Consensus       597 ~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (699)
T KOG3665|consen  597 FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR  676 (699)
T ss_pred             chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence            2222222222222111111111111222333 555666555778899999999999998888888888888888887764


Q ss_pred             hc-CChhHHHHHHHHHHH
Q 037562          545 QN-TEFDTKKEAAWAISN  561 (670)
Q Consensus       545 ~~-~~~~v~~~a~~aL~~  561 (670)
                      .. ...+++..+...+.+
T Consensus       677 ~~~~~~~~~~~~~~~i~~  694 (699)
T KOG3665|consen  677 VLSEVVDVKEEAVLVIES  694 (699)
T ss_pred             hhHHHHHHHHHHHHHhhc
Confidence            42 244555555544433

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.98  E-value=1.1e-07  Score=101.98  Aligned_cols=418  Identities=15%  Similarity=0.141  Sum_probs=285.7

Q ss_pred             hhhHHHHhhcchhhhhhccccCCCccccch------h--h-hhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCc
Q 037562          203 TTIKYLYLKKLGEFLQSQRSRISTPVLSLN------L--Q-SKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPP  273 (670)
Q Consensus       203 ~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~------~--~-~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  273 (670)
                      ..|+.-.......++++..++++...+...      +  + ..-+.++.+.++..++...++..|...+..+....+.+.
T Consensus       232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~  311 (759)
T KOG0211|consen  232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD  311 (759)
T ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence            457777777888888888888877666411      0  1 111446677777777778899999999888876542321


Q ss_pred             HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 037562          274 IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG  353 (670)
Q Consensus       274 ~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  353 (670)
                         -....+.+.+++..++.+ ..++...+.....+..   ...........++....++++...+.+..++.-...++.
T Consensus       312 ---d~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~  384 (759)
T KOG0211|consen  312 ---DVVKSLTESLVQAVEDGS-WRVSYMVADKFSELSS---AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLAC  384 (759)
T ss_pred             ---hhhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHH---HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhh
Confidence               223346788899988888 6888888877777655   111122233557788888888888888777666666552


Q ss_pred             -CCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 037562          354 -DSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWAL  432 (670)
Q Consensus       354 -~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L  432 (670)
                       .+..++..+.....++.+-.+. .+.+..++...+.....+.--.+  ....+....|.....+++.++.|+.+..+.+
T Consensus       385 ~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~l  461 (759)
T KOG0211|consen  385 YLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKL  461 (759)
T ss_pred             hcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHH
Confidence             2222223333444456655555 67777888877777666654433  2333466778888899999999999999877


Q ss_pred             HHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHH
Q 037562          433 SYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKE  512 (670)
Q Consensus       433 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~  512 (670)
                      ..+-...+...........++.+..+-.+..++++....+.+..++....   ..+++...-+.+...+.+. ...+++.
T Consensus       462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~  537 (759)
T KOG0211|consen  462 SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREA  537 (759)
T ss_pred             HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHH
Confidence            66554433333334455677888888877889999999999998886432   3355555666777777777 7889999


Q ss_pred             HHHHHHHhhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC
Q 037562          513 VSWIISNITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA  590 (670)
Q Consensus       513 a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  590 (670)
                      |+..+..++.  +....+     ...++.++....+++...|...+.++..++...+.+    +.....++.+.++..++
T Consensus       538 aa~~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~  608 (759)
T KOG0211|consen  538 AARNLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDP  608 (759)
T ss_pred             HHHHhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCC
Confidence            9999888876  322322     235677777766667889998888888877643333    33445789999999999


Q ss_pred             ChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 037562          591 DPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET  659 (670)
Q Consensus       591 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~  659 (670)
                      .++||..+++.+..+...-...                ..+....+.++.|..+++.+++..|..+.+.
T Consensus       609 vanVR~nvak~L~~i~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~  661 (759)
T KOG0211|consen  609 VANVRINVAKHLPKILKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFGS  661 (759)
T ss_pred             chhhhhhHHHHHHHHHhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence            9999999999999987653322                1233335667777778888888887766543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=3.7e-08  Score=93.75  Aligned_cols=187  Identities=16%  Similarity=0.187  Sum_probs=154.7

Q ss_pred             CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHh
Q 037562          379 ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVEL  458 (670)
Q Consensus       379 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  458 (670)
                      .+.+-+..|..-|..++..-.+.......|+.+.++..+++.+..+|..|+++++..+++++...+.+++.|+++.|+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            34455556666677777665555555567777777789999999999999999999999999999999999999999999


Q ss_pred             cCCCCc-cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC-CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCC
Q 037562          459 LGHSSS-SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN-HEESIKKEVSWIISNITCGNREQIQAVIDSGL  536 (670)
Q Consensus       459 L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~  536 (670)
                      +.++++ .++..|+.+++.+..+++.....+...++...|...++++ .+...+..|+..+..+..........+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            987554 5779999999999999999999899999999999999984 27788999999999998865555555555666


Q ss_pred             hHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562          537 IGPIVNLLQNTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       537 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  565 (670)
                      ...+..+....+.++...+..++..+...
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            66777777788899999999998887663

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=2.3e-07  Score=96.37  Aligned_cols=373  Identities=18%  Similarity=0.179  Sum_probs=258.2

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +.+|.+++.+...|-+.+.-.-..+.+.+...  +..    ..++++.++.=..+++ +.+|..|++.++.+.-  +...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDL----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chH----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence            45888999998888888888888888887763  221    2246777777777778 8999999988887754  2322


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..     +..++...+++.++.+|..|+.+..++-..++   +.+.+.|.++.|-.++ .+.++.|..+|+.+|..+...
T Consensus       120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            22     46789999999999999999999999875543   4566788888888888 688899999999999999988


Q ss_pred             CCC-CChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          398 KPQ-PPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       398 ~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      .+. .........+..++..+..-++--+..++.++.+-...++...+     .++..+...+++.+..+...+..++.+
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            754 44444456666677777666777777777777776655443333     356788899999999999999999998


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHH-------------------------HH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ-------------------------AV  531 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~-------------------------~l  531 (670)
                      +......... .+-...-+.++.++.+. . +++..|..-+.-+....+....                         .+
T Consensus       266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            8875554223 33335667777777776 4 6665555444444333332111                         01


Q ss_pred             HhcC----ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          532 IDSG----LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       532 ~~~~----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                      ....    ++..+......-|.+....|++|+++++......       ++.+..|.++++.....+...++..+..+++
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            1111    2233333333457888999999999998853221       5789999999998877777788888898888


Q ss_pred             hhhhhhccCCCCCCccHHHHHHHHhchHHHH-HHhhcCCCHHHHHHHHHHHHHhc
Q 037562          608 VGVAEMNTGTAVGDFNQYAQLVEEAEGLEKI-ENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l-~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ..++..+             .+     +..+ ..+.+-++|+.+....|++.+|-
T Consensus       416 kyP~~~~-------------~v-----v~~l~~~~~sl~epeak~amiWilg~y~  452 (734)
T KOG1061|consen  416 KYPNKYE-------------SV-----VAILCENLDSLQEPEAKAALIWILGEYA  452 (734)
T ss_pred             cCCCchh-------------hh-----hhhhcccccccCChHHHHHHHHHHhhhh
Confidence            7654321             11     1111 22334467777777788887763

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.8e-06  Score=89.55  Aligned_cols=327  Identities=17%  Similarity=0.175  Sum_probs=237.5

Q ss_pred             hhhhhccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHc
Q 037562          233 LQSKLEILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIA  310 (670)
Q Consensus       233 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~  310 (670)
                      .+..-+.|+.|...+-+ .-.+-++.|++.|..++..    . +..+-.-+++.++..|+.+ .++++...++..+.++.
T Consensus        17 ~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk----Y-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~   91 (970)
T KOG0946|consen   17 QQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----Y-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILT   91 (970)
T ss_pred             cccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----H-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            34455778999998874 4478899999999888543    2 3344444678888888654 33899999999999988


Q ss_pred             CCCh------hhH----------HH-HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhc-CChHHH
Q 037562          311 SGTS------ENT----------KV-VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD-SPRCRDLVLSQ-GALIPL  371 (670)
Q Consensus       311 ~~~~------~~~----------~~-i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~-~~i~~L  371 (670)
                      .+++      ..+          +. +...+.|..++..+...+-.||..++..+.++... .++.++.+... -+|..+
T Consensus        92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l  171 (970)
T KOG0946|consen   92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL  171 (970)
T ss_pred             hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence            7542      222          22 33568889999999999999999999999998754 44566665543 568889


Q ss_pred             HHHhcccCChhHHHHHHHHHHhhhcCCCCCChhh-hhhhHHHHHHhhccC---C-hhHHHHHHHHHHHhccCChHHHHHH
Q 037562          372 LAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ-VRPALPVLAQLIRSN---D-EEVLTDACWALSYLSDGTNDKVQAV  446 (670)
Q Consensus       372 l~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~---~-~~v~~~al~~L~~l~~~~~~~~~~~  446 (670)
                      +.++ .+..+.+|..+...|..++.+.+.....+ ...++..|..++...   | .-|...++..+-|+..++..+.+.+
T Consensus       172 mdlL-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F  250 (970)
T KOG0946|consen  172 MDLL-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF  250 (970)
T ss_pred             HHHH-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence            9999 66667888899999999999886554443 478999999999753   3 3588899999999998888888889


Q ss_pred             HHcCCHHHHHHhcCC---CCc-----c-----chhHHHHHHHHhhcCC-c-----hhhHHHHhCCChHHHHHhhccCC-c
Q 037562          447 IEAGVYPRLVELLGH---SSS-----S-----VLTPALRTIRNIVKGD-D-----FQTQCIINCGALPYFLDMLVHNH-E  506 (670)
Q Consensus       447 ~~~~~i~~L~~lL~~---~~~-----~-----v~~~a~~~L~~l~~~~-~-----~~~~~l~~~~~~~~L~~~l~~~~-~  506 (670)
                      .+.+.++.+.++|..   ++.     .     -...++.++..+..-. .     ...+.+...+++..|..++-++. .
T Consensus       251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp  330 (970)
T KOG0946|consen  251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP  330 (970)
T ss_pred             hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence            999999999988764   232     1     1234555666555321 1     11245567889999999887763 6


Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHhcCC---------hHH-HHHHhh-cCChhHHHHHHHHHHHhcCC
Q 037562          507 ESIKKEVSWIISNITCGNREQIQAVIDSGL---------IGP-IVNLLQ-NTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       507 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~---------i~~-L~~ll~-~~~~~v~~~a~~aL~~l~~~  565 (670)
                      .+++..+.-++++..+++..+...+.+..+         +-. ++.+.. ...+..|..+.+++..+...
T Consensus       331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d  400 (970)
T KOG0946|consen  331 ADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD  400 (970)
T ss_pred             HhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence            789999999999999988777777765221         112 222222 34568888888888887765

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=9e-06  Score=82.98  Aligned_cols=316  Identities=15%  Similarity=0.112  Sum_probs=210.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      ++..+.+-++.+. +.+|.....++..+... .+...   ...+.+.+.+++...+..-+..+.+.++.+..+..  -..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~-~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVL-SKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHH-hhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence            5667778888888 89999999888877651 11111   11346777888888888888899999999886654  345


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND  441 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  441 (670)
                      +.+.+.+..+...+.+..+..-++.+..+....+..-...........+|.+..-+.+....+|..+..+...+...-+.
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            55677888888888444443334344444444443332223333355666666666677888988888777666533221


Q ss_pred             HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562          442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT  521 (670)
Q Consensus       442 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~  521 (670)
                      ..-   + -+++.++.-+....|+.+..++..++.++...+.+.. .....++|.+.+.|.+. .+++|+.+..++.+++
T Consensus       250 ~aV---K-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~  323 (569)
T KOG1242|consen  250 YAV---K-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFG  323 (569)
T ss_pred             chh---h-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence            111   1 2334444444445889999999999999987776555 45568999999999999 9999999999999987


Q ss_pred             c--CCHHHHHHHHh------------------------------cC----ChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562          522 C--GNREQIQAVID------------------------------SG----LIGPIVNLLQNTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       522 ~--~~~~~~~~l~~------------------------------~~----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  565 (670)
                      .  .+++ ++.++.                              ..    ++|.|.+-+...+..+++.++..+.|++.-
T Consensus       324 svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L  402 (569)
T KOG1242|consen  324 SVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL  402 (569)
T ss_pred             HhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence            6  2332 221110                              11    234444444455677889999999999875


Q ss_pred             C-CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhh
Q 037562          566 G-THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAE  612 (670)
Q Consensus       566 ~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  612 (670)
                      - ++.....++.. .++.|-..+.+..|++|..+.++|+.+.+.....
T Consensus       403 veDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  403 VEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             hcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence            3 34333333322 6777777778889999999999998888765443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=2e-06  Score=89.50  Aligned_cols=371  Identities=15%  Similarity=0.157  Sum_probs=238.3

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +..|.+.+.++..++.++..|+.+...+.... .+....     +++...++|.+.+ ..|...++..+..++..+++..
T Consensus       142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~-----f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l  214 (866)
T KOG1062|consen  142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEH-----FVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDAL  214 (866)
T ss_pred             HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHH-----hhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHH
Confidence            34577777888888999999988888876653 222222     5666778888777 6888888888888888777766


Q ss_pred             HHHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC---
Q 037562          318 KVVIDHGAVPIFVKLLAS---------------PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA---  379 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~---  379 (670)
                      ..+.+  .++.|+..|++               ++|-++...++.|.-+..+++...+.+.+      ++..+...+   
T Consensus       215 ~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D------iLaqvatntdss  286 (866)
T KOG1062|consen  215 SYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND------ILAQVATNTDSS  286 (866)
T ss_pred             HHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH------HHHHHHhccccc
Confidence            66655  56666665532               46888888999998888887776655433      222221221   


Q ss_pred             ---ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHH
Q 037562          380 ---NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLV  456 (670)
Q Consensus       380 ---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~  456 (670)
                         ...+...+..++..+-.+.+     ...-++..|-++|.+.|..++.-++..|......++...+...     ..++
T Consensus       287 kN~GnAILYE~V~TI~~I~~~~~-----LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIl  356 (866)
T KOG1062|consen  287 KNAGNAILYECVRTIMDIRSNSG-----LRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STIL  356 (866)
T ss_pred             ccchhHHHHHHHHHHHhccCCch-----HHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHH
Confidence               12444455555544443321     1234667788899999999999999999998877776555322     5789


Q ss_pred             HhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcC
Q 037562          457 ELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSG  535 (670)
Q Consensus       457 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~  535 (670)
                      .+|+++|..++..|+..+..+...  ..+..     .+..++.+|... +++++...+.-+..++.. .|+.+-      
T Consensus       357 eCL~DpD~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------  422 (866)
T KOG1062|consen  357 ECLKDPDVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------  422 (866)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------
Confidence            999999999999999999888753  33442     356788899888 899999988888888762 232221      


Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH----HHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH---h
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQI----KHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK---V  608 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~----~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~---~  608 (670)
                      .++.+...+.....-|+..+...+..+...+.++.-    ..++..  +.... ++.-..+.+...+.|+++..-+   +
T Consensus       423 ~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a--~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~  499 (866)
T KOG1062|consen  423 HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLA--LSEDT-LLDISQEPLLQVASWCIGEYGDLLLD  499 (866)
T ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHH--Hhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhc
Confidence            345666777766666666666666666555412211    111110  00001 2234455667788888876542   2


Q ss_pred             hhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh--cCCCHHHHHHHHHHHHHhc
Q 037562          609 GVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ--SHDDNGISEKAVEILETYW  661 (670)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~--~~~~~~v~~~a~~~l~~~~  661 (670)
                      +... ..          .....++.+++.|..++  +..+..++.+|..++.++.
T Consensus       500 ~~~~-~~----------p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS  543 (866)
T KOG1062|consen  500 GANE-EE----------PIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS  543 (866)
T ss_pred             Cccc-cC----------CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            2111 11          12334566677776663  3345678888877776653

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.86  E-value=6e-08  Score=96.25  Aligned_cols=227  Identities=20%  Similarity=0.252  Sum_probs=159.0

Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHh------cCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          326 VPIFVKLLA--SPSVDVRKQTVWALGNVAGDSPRCRDLVLS------QGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       326 i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ...++.+|+  +.++++...++..+..+..+++...+.+..      .....++++++ +.+|..++..|+.+++.+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            344445444  468899999999999999888876666655      23578888876 677999999999999999988


Q ss_pred             CCCCChhhhhhhHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc-----CC--CCccc
Q 037562          398 KPQPPFNQVRPALPVLAQLIRS----NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL-----GH--SSSSV  466 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-----~~--~~~~v  466 (670)
                      .+........+.++.++..+.+    ++.+++..++.++.++... +.....+.+.++++.+..++     .+  .+.++
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            7666655445666777766664    4567788999999999865 55667788889999999999     22  34468


Q ss_pred             hhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH-HHHHHHhcCChHHHHHHhh
Q 037562          467 LTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE-QIQAVIDSGLIGPIVNLLQ  545 (670)
Q Consensus       467 ~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L~~ll~  545 (670)
                      +..++.+++.++. ++.....+.+.+.++.+.++++......+-+-+..++.|+....++ ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            8899999999998 4566666888889999999999876888999999999999885443 6777777777776666554


Q ss_pred             c--CChhHHHHH
Q 037562          546 N--TEFDTKKEA  555 (670)
Q Consensus       546 ~--~~~~v~~~a  555 (670)
                      .  +|+++....
T Consensus       294 rk~~Dedl~edl  305 (312)
T PF03224_consen  294 RKWSDEDLTEDL  305 (312)
T ss_dssp             S--SSHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            2  466665543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=3.5e-07  Score=97.27  Aligned_cols=318  Identities=17%  Similarity=0.209  Sum_probs=228.7

Q ss_pred             hhHHHHhhc------chhhhhhccccCCCcccc-------------------chhhhhhccHHHHHHHhc-------CCC
Q 037562          204 TIKYLYLKK------LGEFLQSQRSRISTPVLS-------------------LNLQSKLEILPAMVDGVW-------SDD  251 (670)
Q Consensus       204 ~i~~l~~~~------l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~l~-------~~~  251 (670)
                      -.|+||.+.      +++.+=..|-|..+...|                   ..++..+..+|.++..-.       +.-
T Consensus       370 LFQrLFRQDLLvAsLFRNFLLAeRIMrs~nC~PVS~P~LPpt~~H~MW~aWDla~D~cLsqlp~~ild~~~~~f~~~s~F  449 (1387)
T KOG1517|consen  370 LFQRLFRQDLLVASLFRNFLLAERIMRSYNCTPVSSPELPPTYMHPMWKAWDLAMDICLSQLPQLILDAESTDFRHVSPF  449 (1387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCCCCCcccchHHHHHHHHHHHHHHHhHHHHhccCccccccCCch
Confidence            367777554      367777888877666665                   112333444554433221       122


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 037562          252 NSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK  331 (670)
Q Consensus       252 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~  331 (670)
                      ...|..|.+.-....+..+.++-       -+|.+++.|-+.   --|..|+..|+.+..-.+-.....+.-|+.|.+++
T Consensus       450 FteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            34566666666666555433332       256666666542   34778889999988877888888888999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC--ChhHHHHHHHHHHhhhcCCCCCChhhh-hh
Q 037562          332 LLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA--NLSMLRTATWTLFNFCRGKPQPPFNQV-RP  408 (670)
Q Consensus       332 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~  408 (670)
                      +|+++-.+++..-+.+...+...++.++..+++.++-...++.+..+.  +++-+..|+++|+.++.+.+..+.... .+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            999999999999999999998888889988888888888888875422  447788999999999998754444333 56


Q ss_pred             hHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC----Cch
Q 037562          409 ALPVLAQLIRSN-DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG----DDF  483 (670)
Q Consensus       409 ~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~  483 (670)
                      .+...+..+.++ .+-++..++-||+.|-.+.+...-.-...++.+.|+..|.++-++||..|+.+|+.+..+    .++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            777888888875 688999999999999987776655566678899999999999999999999999999875    232


Q ss_pred             hhHHH------------HhCCCh---HHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 037562          484 QTQCI------------INCGAL---PYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI  532 (670)
Q Consensus       484 ~~~~l------------~~~~~~---~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  532 (670)
                      ....+            ++..+.   -.++..++.+ .+-++.+.+.++..+..+.........
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            22221            122222   2566677888 999999999999999876655544433

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.85  E-value=7.1e-08  Score=95.77  Aligned_cols=228  Identities=14%  Similarity=0.168  Sum_probs=160.3

Q ss_pred             hHHHHHHhccc-CChhHHHHHHHHHHhhhcCCCCCChhhhh-------hhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562          368 LIPLLAELNEN-ANLSMLRTATWTLFNFCRGKPQPPFNQVR-------PALPVLAQLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       368 i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                      ...++.++... .+.++.++++..+..+....+........       .....+++++.++|..++..++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            45566666555 78899999999999999887754433331       24567778899999999999999999998766


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCC----CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhh------ccCCchhH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGH----SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDML------VHNHEESI  509 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l------~~~~~~~v  509 (670)
                      +....... .+.++.++..+.+    ++.+++..|+.++.++.. .+..+..+.+.++++.+..++      .+..+..+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            54444322 3455666666554    455678899999999986 556677788899999999999      44447788


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc-
Q 037562          510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL-  587 (670)
Q Consensus       510 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-  587 (670)
                      +.+++.++.-++. +++....+.+.++++.|.++++ ...++|.+-+..++.|+...........++..|+++.+..+. 
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            8999999999965 4777888888889999999998 567899999999999999986555788888888777777766 


Q ss_pred             -cCCChHHHHHH
Q 037562          588 -LCADPKIVTVC  598 (670)
Q Consensus       588 -~~~~~~v~~~a  598 (670)
                       +..|+++....
T Consensus       294 rk~~Dedl~edl  305 (312)
T PF03224_consen  294 RKWSDEDLTEDL  305 (312)
T ss_dssp             S--SSHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence             44678876553

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=2.6e-06  Score=88.69  Aligned_cols=323  Identities=15%  Similarity=0.137  Sum_probs=193.9

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 037562          243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVID  322 (670)
Q Consensus       243 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  322 (670)
                      +.+-|++.+.-++-.|+.+++++++.+   -.+     ++.|.+.+++++.+ +.+|..|+.|...+....|+..+.+  
T Consensus       112 lknDL~s~nq~vVglAL~alg~i~s~E---mar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f--  180 (866)
T KOG1062|consen  112 LKNDLNSSNQYVVGLALCALGNICSPE---MAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF--  180 (866)
T ss_pred             HHhhccCCCeeehHHHHHHhhccCCHH---HhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh--
Confidence            344455677778888888888886542   111     25677778888888 8999999988888887666655443  


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------------cCChhHHHHHH
Q 037562          323 HGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------------NANLSMLRTAT  388 (670)
Q Consensus       323 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~--------------~~~~~~~~~a~  388 (670)
                         ++..-.+|.+.+..|...++..+..+|..+++.-..+.+  .++.++..|++              -.+|-++..++
T Consensus       181 ---~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL  255 (866)
T KOG1062|consen  181 ---VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL  255 (866)
T ss_pred             ---hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence               567777887777778777888888888766654333333  45555555522              13445555666


Q ss_pred             HHHHhhhcCCCCCChhhhhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc
Q 037562          389 WTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN---DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS  465 (670)
Q Consensus       389 ~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  465 (670)
                      ..|.-+..+++.. ...+..++..+..--.++   -..+...+..++..+-.+..-+ .     -++..|-++|.+.+..
T Consensus       256 rlLriLGq~d~da-Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr-v-----lainiLgkFL~n~d~N  328 (866)
T KOG1062|consen  256 RLLRILGQNDADA-SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR-V-----LAINILGKFLLNRDNN  328 (866)
T ss_pred             HHHHHhcCCCccH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH-H-----HHHHHHHHHhcCCccc
Confidence            6666665554221 111122211111111111   1334444555554443322211 0     1345566666666666


Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562          466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ  545 (670)
Q Consensus       466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~  545 (670)
                      +|..|+..|......++...+.     --..+++.|++. |..+|+.|......+...  .++..     ++..|++.|.
T Consensus       329 irYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~  395 (866)
T KOG1062|consen  329 IRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLE  395 (866)
T ss_pred             eeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHH
Confidence            7777777777666655544332     234578889999 999999999888888653  33333     3567888999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          546 NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       546 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                      +.+++++...+.-+..++....|+.+=+      ++.+...++..-.-|+..+...+.+++.
T Consensus       396 ~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa  451 (866)
T KOG1062|consen  396 SSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIA  451 (866)
T ss_pred             hccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHh
Confidence            8899999999999999988765544322      3444555544433334344444444443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.84  E-value=7.6e-07  Score=91.35  Aligned_cols=385  Identities=15%  Similarity=0.143  Sum_probs=232.1

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDY-PQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      .+..++.-++++.++.+..++....++...-......+-.+.-.+..++..++.++. ..|......++.+-...  ..+
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~k  794 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVK  794 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--ccc
Confidence            366777778888888887777777776554323333333333355555555554431 23444444444443221  111


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR--DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC  395 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  395 (670)
                      ..+  ..++..++..|+++++.+|++|+..++.++..-..+.  +.+...|.  .|...+ ....+++.-..+.++..++
T Consensus       795 pyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  795 PYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV  869 (1172)
T ss_pred             cch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence            111  2346677889999999999999999999873222111  12223332  245555 6677888887777776666


Q ss_pred             cCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562          396 RGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI  474 (670)
Q Consensus       396 ~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L  474 (670)
                      ... -.....-+.+++|.|..+|++....|+++++..++.++...++....--=..+-=-|+.+|.+.+..+|.+|...+
T Consensus       870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            543 1222333578999999999999999999999999999977665432110011222366677777888999999888


Q ss_pred             HHhhcCCc--hhhHHHH----------------------h-CC---ChHHHHHhhccCCchhHHHHHHHHHHHhhcCC-H
Q 037562          475 RNIVKGDD--FQTQCII----------------------N-CG---ALPYFLDMLVHNHEESIKKEVSWIISNITCGN-R  525 (670)
Q Consensus       475 ~~l~~~~~--~~~~~l~----------------------~-~~---~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~-~  525 (670)
                      +.++..-.  +....++                      + .|   ++|.|+.=...+ +..|+.....+++.+...- .
T Consensus       950 G~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyige 1028 (1172)
T KOG0213|consen  950 GYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGE 1028 (1172)
T ss_pred             hHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHH
Confidence            88875211  1111111                      1 12   344444444445 6778888888887775421 1


Q ss_pred             HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc-------cCCChHHHHHH
Q 037562          526 EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL-------LCADPKIVTVC  598 (670)
Q Consensus       526 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-------~~~~~~v~~~a  598 (670)
                      ....++.  -+.|.|-+.+.+.|.--|..|+.++.+++.+..        -.|..+.++.++       -...|.+..+.
T Consensus      1029 mskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa~ 1098 (1172)
T KOG0213|consen 1029 MSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQAF 1098 (1172)
T ss_pred             HhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHHH
Confidence            1122222  367888888888999999999999999988531        123344444443       45677777777


Q ss_pred             HHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          599 LEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       599 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ..++..+-..-.                    -.-.+..+.+=+-|+...|++.+=++.+.+|
T Consensus      1099 ~e~~eg~r~~Lg--------------------~~~~~~Y~~QGLFHParkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1099 DEAMEGLRVALG--------------------PQAMLKYCLQGLFHPARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred             HHHHHHHHHHhc--------------------hHHHHHHHHHhccCcHHHHHHHHHHHHHhHh
Confidence            777666432211                    1111344455566777888877766666654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.83  E-value=4.8e-07  Score=90.13  Aligned_cols=356  Identities=13%  Similarity=0.097  Sum_probs=217.7

Q ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCCCCcHHHHH-HcC-CHHHH-HHhhcCCCCHHHHHHHHHHHHHHcC----
Q 037562          240 LPAMVDGVWSDD-NSLQLEATTLFINLLSFDRSPPIDEVI-QSG-VVPRF-VEFLMRQDYPQLQFKAAWALTNIAS----  311 (670)
Q Consensus       240 i~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g-~l~~L-~~ll~~~~~~~v~~~a~~~L~~l~~----  311 (670)
                      ...++.....+. ...+.+++.++..+....  .+ +.++ ..+ ++-.+ ...++.+....+|..|+.+|.+-..    
T Consensus       135 m~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~  211 (858)
T COG5215         135 MEEMVRNVGDEQPVSGKCESLGICGYHCESE--AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG  211 (858)
T ss_pred             HHHHHHhccccCchHhHHHHHHHHHHHhhcc--CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence            344444444443 478899999999987664  33 2233 222 22233 3344444447899999999987222    


Q ss_pred             --CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHH
Q 037562          312 --GTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW  389 (670)
Q Consensus       312 --~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~  389 (670)
                        ..+..|.     -+++..++.-+.++.+++..|..+|..+..-.-..-+...+. ++-.+.....++++.++...+..
T Consensus       212 nf~~E~erN-----y~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~qavE  285 (858)
T COG5215         212 NFCYEEERN-----YFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQAVE  285 (858)
T ss_pred             hhcchhhhc-----hhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHHHHH
Confidence              0122222     234566677788999999999999999874322222222222 23333333347788888888888


Q ss_pred             HHHhhhcCCCCCC-----------------hhhhhhhHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHHHHH
Q 037562          390 TLFNFCRGKPQPP-----------------FNQVRPALPVLAQLIRSN-------DEEVLTDACWALSYLSDGTNDKVQA  445 (670)
Q Consensus       390 ~L~~l~~~~~~~~-----------------~~~~~~~i~~L~~lL~~~-------~~~v~~~al~~L~~l~~~~~~~~~~  445 (670)
                      ..+.+|.......                 ......++|.|+++|...       |..+...|..||.-.++...+   .
T Consensus       286 fWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~  362 (858)
T COG5215         286 FWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---K  362 (858)
T ss_pred             HHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---H
Confidence            8877776541111                 011255889999999742       345666777777666543222   2


Q ss_pred             HHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH
Q 037562          446 VIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR  525 (670)
Q Consensus       446 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~  525 (670)
                      +++ .++..+-.-++++++.-|+.|..+++.+..+.......-+-...+|.+...+.+. .-.++..++|+++.++.+-+
T Consensus       363 i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va  440 (858)
T COG5215         363 IMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             hHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHH
Confidence            333 2555566667889999999999999999987665544444456888888888877 88899999999999976433


Q ss_pred             HHHHHHHhcCChHHHHH-Hhh--cCChhHHHHHHHHHHHhcCCCCHHHH--HHHHHc---CCcHHHHhhc--cCCChHHH
Q 037562          526 EQIQAVIDSGLIGPIVN-LLQ--NTEFDTKKEAAWAISNATKFGTHEQI--KHLVRE---GCVKPLCDLL--LCADPKIV  595 (670)
Q Consensus       526 ~~~~~l~~~~~i~~L~~-ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~--~~l~~~---~~i~~L~~ll--~~~~~~v~  595 (670)
                      ..+.   ..+-++..+. .+.  .+.+.+..+++|+..|+..+-.+...  ..++-.   .++..|+.--  ...+...|
T Consensus       441 ~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R  517 (858)
T COG5215         441 MIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLR  517 (858)
T ss_pred             HhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHH
Confidence            3221   1222333332 222  34678889999999999875322110  111111   1222222221  23455788


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 037562          596 TVCLEGLENILKVGVAE  612 (670)
Q Consensus       596 ~~a~~~l~~l~~~~~~~  612 (670)
                      ..+..+|+.++...+..
T Consensus       518 ~s~fsaLgtli~~~~d~  534 (858)
T COG5215         518 VSLFSALGTLILICPDA  534 (858)
T ss_pred             HHHHHHHHHHHhhcchh
Confidence            88999999988766543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.79  E-value=1.2e-06  Score=87.47  Aligned_cols=394  Identities=16%  Similarity=0.128  Sum_probs=238.1

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS--DDNSLQLEATTLFINLLSFDRSPPIDEVIQ  279 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  279 (670)
                      +.+.+.-.+..+...+.+..+..-...       ....+-.++..-.+  .+..++..|+.+|.+-...-+.....+--.
T Consensus       147 p~~~k~~sl~~~gy~ces~~Pe~li~~-------sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~er  219 (858)
T COG5215         147 PVSGKCESLGICGYHCESEAPEDLIQM-------SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEER  219 (858)
T ss_pred             chHhHHHHHHHHHHHhhccCHHHHHHH-------hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence            556666667777777776665322222       22334455554443  345788999999987322210000111111


Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562          280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      +-++...++.-+.++ .+++..|..||..+..-..+..+.+.+.-......+.++++++++..+|+...+.+|...-+..
T Consensus       220 Ny~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~  298 (858)
T COG5215         220 NYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGE  298 (858)
T ss_pred             chhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhH
Confidence            224556677777778 8999999999999988677777777776666667778899999999999999988885321111


Q ss_pred             HHH----------------HhcCChHHHHHHhcc-cC-----ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh
Q 037562          360 DLV----------------LSQGALIPLLAELNE-NA-----NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI  417 (670)
Q Consensus       360 ~~i----------------~~~~~i~~Ll~~l~~-~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL  417 (670)
                      -..                .-.+++|.++++|.+ +.     +..+-..|..||.-++....+   .+..+++..+-+-+
T Consensus       299 ~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~pVl~FvEqni  375 (858)
T COG5215         299 MEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMRPVLGFVEQNI  375 (858)
T ss_pred             HHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHHHHHHHHHHhc
Confidence            000                012368889999854 22     224555666666655544321   23344566666777


Q ss_pred             ccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHH
Q 037562          418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYF  497 (670)
Q Consensus       418 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L  497 (670)
                      ++++..-++.+..+++.+..++......-+-...++.+...+.++.--++..++|+++.++.+-+....   ..+-++..
T Consensus       376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~  452 (858)
T COG5215         376 RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLE  452 (858)
T ss_pred             cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcC---ccccccHH
Confidence            888888999999999999987665555444457889999999888888999999999999875433211   22323222


Q ss_pred             HHhhc---cCCchhHHHHHHHHHHHhhcCCHHHHH---HHHh---cCChHHHHHHhh--cCChhHHHHHHHHHHHhcCCC
Q 037562          498 LDMLV---HNHEESIKKEVSWIISNITCGNREQIQ---AVID---SGLIGPIVNLLQ--NTEFDTKKEAAWAISNATKFG  566 (670)
Q Consensus       498 ~~~l~---~~~~~~v~~~a~~~L~~l~~~~~~~~~---~l~~---~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~  566 (670)
                      ++...   .+ .+.+....+|..-|++.+-++...   .++.   ..++..|+...+  ..+...|..+..+|+.+...+
T Consensus       453 vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~  531 (858)
T COG5215         453 VSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC  531 (858)
T ss_pred             HHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence            22211   12 467778899999999874333221   1111   113333333322  345788888889999888764


Q ss_pred             CHHHHHHHHH---------cCCcHHHHhhccCCCh----HHHHHHHHHHHHHHHhhh
Q 037562          567 THEQIKHLVR---------EGCVKPLCDLLLCADP----KIVTVCLEGLENILKVGV  610 (670)
Q Consensus       567 ~~~~~~~l~~---------~~~i~~L~~ll~~~~~----~v~~~a~~~l~~l~~~~~  610 (670)
                      .......+..         ...+..+-+.+..+|.    +++.+.+..|..+++...
T Consensus       532 ~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~  588 (858)
T COG5215         532 PDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR  588 (858)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3332222111         1123334444444333    455566666666665433

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.78  E-value=7.3e-06  Score=84.41  Aligned_cols=387  Identities=15%  Similarity=0.112  Sum_probs=228.8

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-------CCCHHHHHHHHHHHHHHcCC
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR-------QDYPQLQFKAAWALTNIASG  312 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~-------~~~~~v~~~a~~~L~~l~~~  312 (670)
                      +-.++...+++|.+.+.-.+.++.+++...  ......+...++|.+......       .+...+...+..+-..+.. 
T Consensus       638 mlil~rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~-  714 (1172)
T KOG0213|consen  638 MLILIREFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS-  714 (1172)
T ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc-
Confidence            344555556778888888888888876653  333445555667766654332       2222333333333333322 


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHHHHHHhcccC-ChhHHHHHHH
Q 037562          313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP--RCRDLVLSQGALIPLLAELNENA-NLSMLRTATW  389 (670)
Q Consensus       313 ~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~~~i~~Ll~~l~~~~-~~~~~~~a~~  389 (670)
                                ...+..++.-++++++..|..++.+..++...-+  ..-+.. +...+..++..++..+ +..+.-....
T Consensus       715 ----------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~gfg  783 (1172)
T KOG0213|consen  715 ----------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLGFG  783 (1172)
T ss_pred             ----------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhhHH
Confidence                      2356677777888888888877777766653221  111111 1123455555553332 2333334444


Q ss_pred             HHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH--HHHHHHcCCHHHHHHhcCCCCccch
Q 037562          390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK--VQAVIEAGVYPRLVELLGHSSSSVL  467 (670)
Q Consensus       390 ~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~v~  467 (670)
                      ++.+-...   ........++..++..|++..+.++..++..++.++.--...  .+.+...|  -.|...|....+++.
T Consensus       784 ~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvL  858 (1172)
T KOG0213|consen  784 TVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVL  858 (1172)
T ss_pred             HHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHH
Confidence            44443322   222233567778889999999999999999999887321111  11122223  356777888888887


Q ss_pred             hHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037562          468 TPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT  547 (670)
Q Consensus       468 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~  547 (670)
                      -..+.++..+...-.-....---.+++|.|..+|++. ...|+......++.++...++.+..=-=..+--.|+++|++.
T Consensus       859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah  937 (1172)
T KOG0213|consen  859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH  937 (1172)
T ss_pred             HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH
Confidence            7766666666532110000001237899999999999 999999999999999875544211000011334577788888


Q ss_pred             ChhHHHHHHHHHHHhcCCCCHHHH-HHHH----------------------H----cCCcHHHHhhccCCChHHHHHHHH
Q 037562          548 EFDTKKEAAWAISNATKFGTHEQI-KHLV----------------------R----EGCVKPLCDLLLCADPKIVTVCLE  600 (670)
Q Consensus       548 ~~~v~~~a~~aL~~l~~~~~~~~~-~~l~----------------------~----~~~i~~L~~ll~~~~~~v~~~a~~  600 (670)
                      +.++|++|...++.++....|... ..++                      +    -.++|.|..-...++..|+.-+++
T Consensus       938 kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen  938 KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred             HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHH
Confidence            899999999999998875433221 1111                      1    113566666667788899999999


Q ss_pred             HHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562          601 GLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       601 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      ++..+|++-.+..+.         |.-.+     .+.|++-+.+.+.-=++.|..++..+
T Consensus      1018 alsf~Feyigemskd---------Yiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1018 ALSFMFEYIGEMSKD---------YIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred             HHHHHHHHHHHHhhh---------HHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence            999999886655432         22111     34455555556566566666666544

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.77  E-value=4.1e-07  Score=88.39  Aligned_cols=273  Identities=16%  Similarity=0.143  Sum_probs=192.2

Q ss_pred             HHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 037562          275 DEVIQSGVVPRFVEFLMRQDY-PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVA  352 (670)
Q Consensus       275 ~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~  352 (670)
                      +.+...|++..|++++..++. ..++..|++.|..+..  .++++.++..| +..++.+.+. +.++.+...+..|.++.
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            345556889999999998862 3579999999999875  68888888877 6666666554 66888999999999999


Q ss_pred             CCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC--CCChhhhhhhHHHHHHhhccCChhHHHHHHH
Q 037562          353 GDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP--QPPFNQVRPALPVLAQLIRSNDEEVLTDACW  430 (670)
Q Consensus       353 ~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~  430 (670)
                      .++.+....++..|++..++-.. ...++.+.++++.+|.|+.-+..  ....++...+-.-|..+-.+.|+-.+..|+.
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence            99888888888999999988887 66779999999999999987762  2233333455555666666778889999999


Q ss_pred             HHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHH
Q 037562          431 ALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIK  510 (670)
Q Consensus       431 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~  510 (670)
                      +++.++.+.+ .-..+..+|.+..+-.++.+-++.-          ++.+..+..+ -.....++.|+.+|++. .-+.+
T Consensus       330 AV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~LqRLvPlLdS~-R~EAq  396 (832)
T KOG3678|consen  330 AVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDLQRLVPLLDSN-RLEAQ  396 (832)
T ss_pred             HHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHHHHhhhhhhcc-hhhhh
Confidence            9999987644 3344667787777777777766521          2221111111 01123577888899877 66666


Q ss_pred             HHHHHHHHHhhc-C-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          511 KEVSWIISNITC-G-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       511 ~~a~~~L~~l~~-~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                      ..+++-++.=+. . .....+.+.+-|.|..|.++..+.|.--..-|..||.-+..
T Consensus       397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            655555444332 1 11223345577889999998887776666666667666654

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=5.6e-07  Score=93.62  Aligned_cols=303  Identities=16%  Similarity=0.164  Sum_probs=196.0

Q ss_pred             hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      ..++..+++-..++++.++..|++.+..+--       ..+.+. ...++.+.+++.+ +.+|..|+-+..++-.   ..
T Consensus        85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-------~~i~ey-~~~Pl~~~l~d~~-~yvRktaa~~vakl~~---~~  152 (734)
T KOG1061|consen   85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRV-------DKITEY-LCDPLLKCLKDDD-PYVRKTAAVCVAKLFD---ID  152 (734)
T ss_pred             HhhhhhhhccCCCCCHHHHHHHhhceeeEee-------hHHHHH-HHHHHHHhccCCC-hhHHHHHHHHHHHhhc---CC
Confidence            4567777777778888888888777754411       122222 5678889999999 8999999999999866   45


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                      .+...+.|.++.|..++.++++.+..+|+.+|..+....+..-...+....+..++..+    +.-....-+.++-.++.
T Consensus       153 ~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~  228 (734)
T KOG1061|consen  153 PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAE  228 (734)
T ss_pred             hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHh
Confidence            56677899999999999999999999999999999865543111111111223333333    22222344455666666


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      ..|... .-...++..+...+++.++.+...+...+.++......... .+-..+-+.++.++.+.. +++..|++-+.-
T Consensus       229 y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~l  305 (734)
T KOG1061|consen  229 YVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINL  305 (734)
T ss_pred             cCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHH
Confidence            655444 34456777888888888988888888888887755444222 222356677777777766 677767666665


Q ss_pred             hhcCCchhhHH-------------------------HH-hCCChHHHHHhh---ccCCchhHHHHHHHHHHHhhcCCHHH
Q 037562          477 IVKGDDFQTQC-------------------------II-NCGALPYFLDML---VHNHEESIKKEVSWIISNITCGNREQ  527 (670)
Q Consensus       477 l~~~~~~~~~~-------------------------l~-~~~~~~~L~~~l---~~~~~~~v~~~a~~~L~~l~~~~~~~  527 (670)
                      +....+.....                         +. ++++-+.+-++.   ..- +.+..++|.+++++++..-++.
T Consensus       306 il~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~  384 (734)
T KOG1061|consen  306 ILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS  384 (734)
T ss_pred             HHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh
Confidence            55433321110                         00 111112222222   233 7778889999999998743331


Q ss_pred             HHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562          528 IQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       528 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  565 (670)
                            ++++..|+++++.+-..+..+++..+..+...
T Consensus       385 ------~~cv~~lLell~~~~~yvvqE~~vvi~dilRk  416 (734)
T KOG1061|consen  385 ------NDCVSILLELLETKVDYVVQEAIVVIRDILRK  416 (734)
T ss_pred             ------hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence                  56778888888866666777777777777664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.74  E-value=3.7e-07  Score=98.82  Aligned_cols=554  Identities=17%  Similarity=0.135  Sum_probs=264.3

Q ss_pred             CCcEEEEecCCCCccccCC---------------Cccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562           48 NLVILCVHCCDHLINLVPS---------------STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE  112 (670)
Q Consensus        48 ~L~~L~i~~c~~l~~~~~~---------------~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  112 (670)
                      .|++|.++++...+.....               ..+-.+|++|+|.|-..+..-++......||+|++|.|.+-.-...
T Consensus        84 ~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~  163 (699)
T KOG3665|consen   84 DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND  163 (699)
T ss_pred             cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch
Confidence            4888888877655443221               1124689999999854433222222244699999999987432111


Q ss_pred             ecccccccccccccccccccccccccc--ccccccccCCcccCCCCccEEeEecCCCcccccc--CCcCCCCccceeeee
Q 037562          113 IVLVDDVVAQDEVITFRELKELNLLQM--QNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG--GELSTPNLHKVQLSR  188 (670)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~--~~~~~~~L~~l~i~~  188 (670)
                      -+       ..--..||+|..|+|+++  .+|..      ...+++|+.|.+++-+= +..+.  ....+.+|+.|+||+
T Consensus       164 dF-------~~lc~sFpNL~sLDIS~TnI~nl~G------IS~LknLq~L~mrnLe~-e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  164 DF-------SQLCASFPNLRSLDISGTNISNLSG------ISRLKNLQVLSMRNLEF-ESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             hH-------HHHhhccCccceeecCCCCccCcHH------HhccccHHHHhccCCCC-CchhhHHHHhcccCCCeeeccc
Confidence            00       111246999999999975  34422      34578888888876542 22221  234578899998875


Q ss_pred             ccCCccceeeccchhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHH-HHHHhc
Q 037562          189 WDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTL-FINLLS  267 (670)
Q Consensus       189 ~~~~~~~~~~~~~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~-L~~l~~  267 (670)
                      .....      +..-..+.+-.+..   +    +..++-+..     +...-..+++.+....+.++.-++.. ...-+.
T Consensus       230 ~~~~~------~~~ii~qYlec~~~---L----peLrfLDcS-----gTdi~~~~le~ll~sH~~L~~i~~~~~~~~~~~  291 (699)
T KOG3665|consen  230 DKNND------DTKIIEQYLECGMV---L----PELRFLDCS-----GTDINEEILEELLNSHPNLQQIAALDCLALSAV  291 (699)
T ss_pred             ccccc------chHHHHHHHHhccc---C----ccccEEecC-----CcchhHHHHHHHHHhCccHhhhhhhhhhccccc
Confidence            44332      22111111111111   1    111222111     11112234444433444444333332 111111


Q ss_pred             CCCCCcHHHHHH----cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHH
Q 037562          268 FDRSPPIDEVIQ----SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQ  343 (670)
Q Consensus       268 ~~~~~~~~~~~~----~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~  343 (670)
                      .  .... .+..    ...+..+..+..-.. +.....+...+..+.... +..+...-...+..++..++......+..
T Consensus       292 ~--~~~i-~~ln~at~~s~i~~L~~~~~l~r-~~~v~~cl~~l~~~~~~~-~~~~~~~~~~~l~~i~~sm~~~~s~~~i~  366 (699)
T KOG3665|consen  292 S--STEI-RVLNTATLDSSIQALTYYLNLKR-PSEVSRCLNELLDLLKSL-DSTREYDISECLKLIINSMNTFSSSNQIQ  366 (699)
T ss_pred             c--ccCc-eeeeecchhHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHhcCChhhhh
Confidence            1  1011 1112    223444444444444 445555555555555422 22222222356667777766533355556


Q ss_pred             HHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCCh-
Q 037562          344 TVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDE-  422 (670)
Q Consensus       344 a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~-  422 (670)
                      ...++..++.....--......-.+..+++....  .+.+.......+++.....        .......-..+...+. 
T Consensus       367 ~~~CL~~i~~~~~~~l~~~~~~~~l~~LLn~v~~--~~~~~~~~~~~~~~~i~~~--------~~~~~~~~~~~~~~~~~  436 (699)
T KOG3665|consen  367 GSACLIHIVKHTKQRLSPLLVSLLLKVLLNLVEK--LDTLDSNDELTLCNSIILL--------LSLLVSRRKLLSVLDHH  436 (699)
T ss_pred             HHHHHHHHHHhhhhccChHHHHHHHHHHHHhhhc--ccccccchhHHHHHHHHHH--------HHHHHHHHHHhhccchh
Confidence            6888888875432100001111123333333321  1111111111111111000        0000000001111121 


Q ss_pred             ---hHHHHHHHHHHHhccCChHHHHH--HHHcCCHHHHHHh--cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChH
Q 037562          423 ---EVLTDACWALSYLSDGTNDKVQA--VIEAGVYPRLVEL--LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALP  495 (670)
Q Consensus       423 ---~v~~~al~~L~~l~~~~~~~~~~--~~~~~~i~~L~~l--L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~  495 (670)
                         .+...+..++.+...........  .-..+.+..+...  +....+-.-..-..+++++...++..++.+++.++..
T Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~  516 (699)
T KOG3665|consen  437 EQDNIQQRLTVCLSISTACQVVSITKVNVGELGIVLTLLLRIKLRKIYWCDDVLEFTALWNITDENPETCKEFLDNGGMK  516 (699)
T ss_pred             hhhhhhHHHHHhhcchhHHHHHHHHHhccchhHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcCCHHHHHHHHhcccHH
Confidence               22222222222221110000010  0111222221111  1122222111112288899999999999999999999


Q ss_pred             HHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCC-hHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCH-----
Q 037562          496 YFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGL-IGPIVNLLQNTE-FDTKKEAAWAISNATKFGTH-----  568 (670)
Q Consensus       496 ~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~-----  568 (670)
                      .+...++.-...+++..+...++|++...+..-.......+ ...+-.++..-+ .+.-..|+..|+.+...+++     
T Consensus       517 ~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~~~~~~~~~  596 (699)
T KOG3665|consen  517 LLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSDSEKTTECV  596 (699)
T ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhCCCcCcccc
Confidence            99999987657789999999999998732211111111001 112222333333 37777888888888775321     


Q ss_pred             ---HHHHHHHH--------------cCCcHH-HHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHH
Q 037562          569 ---EQIKHLVR--------------EGCVKP-LCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV  629 (670)
Q Consensus       569 ---~~~~~l~~--------------~~~i~~-L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  629 (670)
                         .....+.+              ...+.+ +..++ .+..+..+.+|++++.+++.....             +++.+
T Consensus       597 ~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~-------------~~~~~  663 (699)
T KOG3665|consen  597 FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE-------------YCKLV  663 (699)
T ss_pred             chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh-------------hhhhh
Confidence               00111111              112333 44444 345667788999999988865433             46678


Q ss_pred             HHhchHHHHHHhh-cCCCHHHHHHHHHHHHHhc
Q 037562          630 EEAEGLEKIENLQ-SHDDNGISEKAVEILETYW  661 (670)
Q Consensus       630 ~~~g~~~~l~~L~-~~~~~~v~~~a~~~l~~~~  661 (670)
                      .+.|++..+..+. .....+++..+..+++...
T Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  664 RESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             HhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            8899999887763 2236667777777776554

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.5e-05  Score=72.90  Aligned_cols=342  Identities=13%  Similarity=0.121  Sum_probs=231.0

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPP---IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      .|.+-..+..++..++.-|+..+..+..+.+...   +..++.+|+++.++..+-.++ .+|..+|...+..++. .+..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence            5666677788889999999999998887642222   334567899999999999988 7999999999999998 7888


Q ss_pred             HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562          317 TKVVIDHGAVPIFV--KLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF  394 (670)
Q Consensus       317 ~~~i~~~~~i~~L~--~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  394 (670)
                      ...+.+.+....+-  .+...-+.-.|......+..+.+-++........+|.+..|..-+....|.-++.++......+
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            88888877765543  2333456677778888888998888888888888998888888886667878888888888889


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCChH---HHHHHHHc--CCHHHHHHhcCCCCccch
Q 037562          395 CRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTND---KVQAVIEA--GVYPRLVELLGHSSSSVL  467 (670)
Q Consensus       395 ~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~---~~~~~~~~--~~i~~L~~lL~~~~~~v~  467 (670)
                      ........+....|.++.+..++...  ++--.-.++...+.+-.....   .-+.+.+.  -++.....++...+++.+
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            88776777777789999988888743  444444344444443321100   00111111  234445566777899999


Q ss_pred             hHHHHHHHHhhcCCchhhHHHHhCCC--hHH-HHHhhccCCchhHHHHHHHHHHHhhcC---CHHH---------HHHH-
Q 037562          468 TPALRTIRNIVKGDDFQTQCIINCGA--LPY-FLDMLVHNHEESIKKEVSWIISNITCG---NREQ---------IQAV-  531 (670)
Q Consensus       468 ~~a~~~L~~l~~~~~~~~~~l~~~~~--~~~-L~~~l~~~~~~~v~~~a~~~L~~l~~~---~~~~---------~~~l-  531 (670)
                      ..|+.+++.+..+. +..+.+...|-  .+. +......+ ...-+..+..++.+++..   .+++         ...+ 
T Consensus       322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli  399 (524)
T KOG4413|consen  322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI  399 (524)
T ss_pred             HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence            99999999997744 44554444432  222 33333333 334566778888888751   1111         1111 


Q ss_pred             Hh-------cCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562          532 ID-------SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL  586 (670)
Q Consensus       532 ~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  586 (670)
                      .+       -.-...+..+++.+.++++..+..++..++.. .=.....+...+.++...+.
T Consensus       400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDa  460 (524)
T KOG4413|consen  400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDA  460 (524)
T ss_pred             HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeeccc
Confidence            11       12355566677788899999999999999874 22333344455555555443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=9.6e-06  Score=84.27  Aligned_cols=329  Identities=17%  Similarity=0.140  Sum_probs=202.9

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .|..+-+.|+++++.++..|++++..+-    -..    +..=++-.+-+...+.. +.||..|+.++-.+-.-+++...
T Consensus       109 SIntfQk~L~DpN~LiRasALRvlSsIR----vp~----IaPI~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~  179 (968)
T KOG1060|consen  109 SINTFQKALKDPNQLIRASALRVLSSIR----VPM----IAPIMLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD  179 (968)
T ss_pred             eHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhh----HHHHHHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence            3677888899999999988888886551    111    11112233345556777 89999999999999887777776


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                      .+     +..+-.+|.+.++.|.-.|+.++-.+|-+.   -+.+-  +-...+.+++ .+-+..-+..+...|...++..
T Consensus       180 qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLIH--knyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~  248 (968)
T KOG1060|consen  180 QL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLIH--KNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ  248 (968)
T ss_pred             HH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHhh--HHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence            54     456667888999999999999999988332   22221  2355666666 4444444445555555555443


Q ss_pred             -CCC------------------------Ch----hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc
Q 037562          399 -PQP------------------------PF----NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA  449 (670)
Q Consensus       399 -~~~------------------------~~----~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  449 (670)
                       +..                        ..    .-..-.++..-.+|.+.++.|..+++.+++.++...  ...     
T Consensus       249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~-----  321 (968)
T KOG1060|consen  249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT-----  321 (968)
T ss_pred             CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----
Confidence             111                        00    001234455567888899999999999999998542  222     


Q ss_pred             CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHH----------------H---------Hh-CC---ChHHHHHh
Q 037562          450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQC----------------I---------IN-CG---ALPYFLDM  500 (670)
Q Consensus       450 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~----------------l---------~~-~~---~~~~L~~~  500 (670)
                      +++..|+.+|.+.. .++...+..|..++...+.....                +         ++ .+   +++-+...
T Consensus       322 ~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~Y  400 (968)
T KOG1060|consen  322 KIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTY  400 (968)
T ss_pred             HHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence            45677888776543 46666666666666433221111                0         11 11   22233344


Q ss_pred             hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 037562          501 LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCV  580 (670)
Q Consensus       501 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i  580 (670)
                      +++. +..+...|..+++.++.....     +...++.-|+.++.+.+..|..+++..|..+......++.+      ++
T Consensus       401 I~s~-d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~------ii  468 (968)
T KOG1060|consen  401 IKSS-DRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE------IL  468 (968)
T ss_pred             HhcC-chhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH------HH
Confidence            4555 556777777788877653322     23346778899999889999999999999998873333322      34


Q ss_pred             HHHHhhccCC-ChHHHHHHHHHHHHHHH
Q 037562          581 KPLCDLLLCA-DPKIVTVCLEGLENILK  607 (670)
Q Consensus       581 ~~L~~ll~~~-~~~v~~~a~~~l~~l~~  607 (670)
                      ..|.+++++- -+.-|..++|.++..+.
T Consensus       469 ~~La~lldti~vp~ARA~IiWLige~~e  496 (968)
T KOG1060|consen  469 FQLARLLDTILVPAARAGIIWLIGEYCE  496 (968)
T ss_pred             HHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence            4566666432 23344444555555443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=5.7e-07  Score=89.62  Aligned_cols=323  Identities=18%  Similarity=0.097  Sum_probs=203.6

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562          278 IQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR  357 (670)
Q Consensus       278 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  357 (670)
                      ...+++++++..+.+++ ..+|..|+..+.|++.. .+..-...-..+...+.++..+.+..++. ++..+-.+..+...
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            44568899999999999 79999999999999872 11111222234566777777777777764 34444444322111


Q ss_pred             hHH-HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562          358 CRD-LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS  436 (670)
Q Consensus       358 ~~~-~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~  436 (670)
                      -+. .+--.+.+|.+-..+ ...++..+.....-+..+-..++..-.......++.|..+|.++.++|+..+=.+++++.
T Consensus       158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            111 111112334333444 456778888777666666555333333334778899999999999999977666665543


Q ss_pred             c---CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCch-hHHHH
Q 037562          437 D---GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE-SIKKE  512 (670)
Q Consensus       437 ~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~-~v~~~  512 (670)
                      .   +.+..   +--...++.++..++++++.++..|+.-|..+..-.+... ...-+|++..++..+.+. +. .++..
T Consensus       237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~  311 (675)
T KOG0212|consen  237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEY  311 (675)
T ss_pred             HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHH
Confidence            1   11211   1122577889999999999999999888887776443322 234567778888888777 44 34444


Q ss_pred             HHHHHHHhhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC
Q 037562          513 VSWIISNITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA  590 (670)
Q Consensus       513 a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  590 (670)
                      |...-..+..  ..+...+.+--..+++.+...+.++..++|..+..-+..+-... +.+.- .........|..-+.+.
T Consensus       312 a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~-p~ql~-~h~~~if~tLL~tLsd~  389 (675)
T KOG0212|consen  312 AQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA-PGQLL-VHNDSIFLTLLKTLSDR  389 (675)
T ss_pred             HHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC-cchhh-hhccHHHHHHHHhhcCc
Confidence            4333222221  11111111111235778888888888999999998888887652 22211 12345788889999999


Q ss_pred             ChHHHHHHHHHHHHHHHhhhh
Q 037562          591 DPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       591 ~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      +.+|...++..+..++.....
T Consensus       390 sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  390 SDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             hhHHHHHHHHHHHHHhcCccc
Confidence            999999999999998876543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.70  E-value=5.6e-06  Score=87.55  Aligned_cols=381  Identities=15%  Similarity=0.157  Sum_probs=221.0

Q ss_pred             HHHHHHhc--CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          241 PAMVDGVW--SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       241 ~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      ...++.++  ..|.+++..|+.+...+.... .+... ..-...++.+++-+.+   +-.|..|+++++.++...-....
T Consensus       571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~f-gD~l~-~eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l  645 (1233)
T KOG1824|consen  571 DCTLQRLKATDSDQEVKERAISCMGQIIANF-GDFLG-NELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDL  645 (1233)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHH-hhhhh-hhhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeeh
Confidence            34455554  467889999999988876653 11111 1112245666665554   56688999999999984322221


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR-CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      .-+-..+++.+...++......+..++.++-.+...... ......+ -++..+..++ ..++..+...|..++..+...
T Consensus       646 ~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~~  723 (1233)
T KOG1824|consen  646 SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAII  723 (1233)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhc
Confidence            222345678888888877777777777777666532110 1111111 1233344444 455667778888888888887


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCC--hhHHH--------------------------------------------HHHHH
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSND--EEVLT--------------------------------------------DACWA  431 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~--------------------------------------------~al~~  431 (670)
                      .|.........+++.++.+++++-  .....                                            ..+.|
T Consensus       724 ~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~c  803 (1233)
T KOG1824|consen  724 QPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKC  803 (1233)
T ss_pred             ccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHH
Confidence            765555555667777776666431  00000                                            11111


Q ss_pred             HHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhH
Q 037562          432 LSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI  509 (670)
Q Consensus       432 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v  509 (670)
                      .+.++...++...     .....+..-+.+  .+..++.-|+-.+|.+-.+.+...    ..++...+++.++++ +.++
T Consensus       804 vA~Lt~~~~~~s~-----s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp-~edv  873 (1233)
T KOG1824|consen  804 VAALTCACPQKSK-----SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSP-SEDV  873 (1233)
T ss_pred             HHHHHHhccccch-----hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCC-hHHH
Confidence            1111111110000     122223333332  344577778888888876554322    234566888999999 9999


Q ss_pred             HHHHHHHHHHhhcCC-HHHHHHHHh----------------------------cCChHHHHHHhh----cCChhHHHHHH
Q 037562          510 KKEVSWIISNITCGN-REQIQAVID----------------------------SGLIGPIVNLLQ----NTEFDTKKEAA  556 (670)
Q Consensus       510 ~~~a~~~L~~l~~~~-~~~~~~l~~----------------------------~~~i~~L~~ll~----~~~~~v~~~a~  556 (670)
                      +..|..+|++++.++ +.+...+.+                            ...++.+.++|.    .....+|.-.+
T Consensus       874 ksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvA  953 (1233)
T KOG1824|consen  874 KSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVA  953 (1233)
T ss_pred             HHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHH
Confidence            999999999998853 333222211                            011222333322    23345677777


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562          557 WAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE  636 (670)
Q Consensus       557 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  636 (670)
                      .+|+.++.. +|+.        .++.|-..+.++.+..|..++.++...+.+...-         ...+.+.     .+.
T Consensus       954 ECLGkL~l~-epes--------LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~---------id~~lk~-----~ig 1010 (1233)
T KOG1824|consen  954 ECLGKLVLI-EPES--------LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQP---------IDPLLKQ-----QIG 1010 (1233)
T ss_pred             HHhhhHHhC-ChHH--------HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCc---------cCHHHHH-----HHH
Confidence            777777776 4443        6788888999999999988888877655433221         1111111     134


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          637 KIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       637 ~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ..-.+..+++.+|+..|..+++..-
T Consensus      1011 ~fl~~~~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHH
Confidence            4455677888999999888877653

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=1.7e-07  Score=92.56  Aligned_cols=310  Identities=14%  Similarity=0.087  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC-CCChhhhhhhHHHHHHhhcc
Q 037562          341 RKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP-QPPFNQVRPALPVLAQLIRS  419 (670)
Q Consensus       341 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~  419 (670)
                      ..+++.+|..++..-...|.-+.+..+.+.|++.| ++++..+..-+...++|+.-... -.......+++..++.++.+
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            34555666677666666777778888899999999 66666666677778888776553 34455558899999999999


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHH-HHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch---hhHHHHhC----
Q 037562          420 NDEEVLTDACWALSYLSDGTNDKVQ-AVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF---QTQCIINC----  491 (670)
Q Consensus       420 ~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~----  491 (670)
                      .|..++....|.++.+..+.+...+ ..+..-++..++.+..++...++.+++.++.|+.++...   ....+++.    
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~  564 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR  564 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence            9999999999999999877654433 245557789999999999999999999999999884432   12212211    


Q ss_pred             CChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHH-hcCChHHHHHHhhc--C---------ChhHHHHHHHHH
Q 037562          492 GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI-DSGLIGPIVNLLQN--T---------EFDTKKEAAWAI  559 (670)
Q Consensus       492 ~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~--~---------~~~v~~~a~~aL  559 (670)
                      -..+.+++.+... +|..-...++.+.++++.+......+. +..++..+..++..  +         ..++-..-....
T Consensus       565 ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~  643 (743)
T COG5369         565 YLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI  643 (743)
T ss_pred             HHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence            2466778888888 777777889999999876555444443 33444444444431  1         112222222333


Q ss_pred             HHhcCCCCHHHHHHHHHcCCcHHHHhhc---cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562          560 SNATKFGTHEQIKHLVREGCVKPLCDLL---LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE  636 (670)
Q Consensus       560 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  636 (670)
                      .++....+ .+.+.+.-.   |.+-.+-   .+++.++-.+..|.+.++....+..+..    .....+++.+.+.|.-+
T Consensus       644 v~l~e~~d-~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~e  715 (743)
T COG5369         644 VNLSENSD-KFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIRE  715 (743)
T ss_pred             eccccccc-ccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHHH
Confidence            33333211 110000000   1111111   2334456667777777754332221111    11234678899999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHh
Q 037562          637 KIENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       637 ~l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      -++.++.++++.|++++-.++..+
T Consensus       716 ~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         716 WLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHhh
Confidence            999999999999999999888754

>TIGR02270 conserved hypothetical protein

Probab=98.66  E-value=5.1e-06  Score=84.21  Aligned_cols=243  Identities=16%  Similarity=0.040  Sum_probs=172.9

Q ss_pred             ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      .+++.++..+. .++..+...++..+.   ..+ ..        ..+..++..+.+.+ +.++..++.+|+.+-.     
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~-----  115 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG-----  115 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-----
Confidence            45777888884 566777766665553   221 11        13788999999888 7899999999987754     


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                            ....+.|+.++++.++.++..++.+++..-.            ...+.+...+ ++.++.++..|+.+|..+..
T Consensus       116 ------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~  176 (410)
T TIGR02270       116 ------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPR  176 (410)
T ss_pred             ------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc
Confidence                  3467889999999999999988887776321            1356788888 68899999999999998876


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      .          ..++.|...+.+.++.|+..++.++..+..  +         ..+..+..+...........+..++..
T Consensus       177 ~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal  235 (410)
T TIGR02270       177 R----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAV  235 (410)
T ss_pred             c----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHh
Confidence            4          356778888999999999999999987753  2         122344443333333343333333333


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA  556 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  556 (670)
                      .  +.+         ..++.|..+++++   .++..++++++.+..           ...++.|+..+.+  +.++..|.
T Consensus       236 ~--~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d--~~~aR~A~  288 (410)
T TIGR02270       236 A--GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD-----------VEAAPWCLEAMRE--PPWARLAG  288 (410)
T ss_pred             C--Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC-----------cchHHHHHHHhcC--cHHHHHHH
Confidence            2  111         4677888888876   389999999998733           2367788888764  34999999


Q ss_pred             HHHHHhcCC
Q 037562          557 WAISNATKF  565 (670)
Q Consensus       557 ~aL~~l~~~  565 (670)
                      .++..++..
T Consensus       289 eA~~~ItG~  297 (410)
T TIGR02270       289 EAFSLITGM  297 (410)
T ss_pred             HHHHHhhCC
Confidence            999999874

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.65  E-value=1.3e-06  Score=85.09  Aligned_cols=268  Identities=15%  Similarity=0.095  Sum_probs=181.7

Q ss_pred             ccHHHHHHHhcCCCh--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 037562          238 EILPAMVDGVWSDDN--SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE  315 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  315 (670)
                      +.+..|+.++++++.  +++++|++.|.++...   ++.+.+...| +..++.+.+....++.+...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            567889999988764  5699999999999764   4556666665 555555555544478999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562          316 NTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG-DSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF  394 (670)
Q Consensus       316 ~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  394 (670)
                      ..+.++.+|++..++--.+..++.+..+|+-+|+|++- .....+..+++..+-+-|+-+- .+.|.-++.+||.+.+.+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            99999999999999998888999999999999999984 3445666777776666565555 555777778999999999


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562          395 CRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI  474 (670)
Q Consensus       395 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L  474 (670)
                      +...........++.+...-.++.+-|+.--..          ...+..+ -....-++.|+.+|++..-+.+.-++.-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            988755555555666555555665555432211          1111111 11114568889999865544433333322


Q ss_pred             HHhhc--CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          475 RNIVK--GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       475 ~~l~~--~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      ..=+.  ......+.+-+-|.++.|-.+..++ +..-...|..+|.-+..
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence            22111  1122344455778899999988877 65555555566655543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=9.8e-06  Score=83.37  Aligned_cols=355  Identities=15%  Similarity=0.144  Sum_probs=216.1

Q ss_pred             hHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHH
Q 037562          205 IKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVP  284 (670)
Q Consensus       205 i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~  284 (670)
                      +...|-+.+..+...-|....-..+     -.-..+....+.+++++..+...|.+.+..+....-...+..+       
T Consensus         8 ~~~~f~ksl~dlikgir~~~~~e~~-----fis~~l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~swa~f-------   75 (877)
T KOG1059|consen    8 IDRFFEKSLKDLIKGIRSHKEDEEK-----FISQCLEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSWAAF-------   75 (877)
T ss_pred             HHHHHHHhHHHHHHHHHHhcccHHH-----HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHHHhh-------
Confidence            4445555555555444444333222     1123466677777788888888888777666433201111111       


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562          285 RFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDSPRCRDLVL  363 (670)
Q Consensus       285 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  363 (670)
                      ..++.+++..   .+..-+..++......+..-..++    ...+++ -+.+++..-...|+.+|+.+...+ -.|+   
T Consensus        76 ~iveVmsssk---~~~krigylaa~qSf~~~tdvlmL----~tn~~rkdl~S~n~ye~giAL~GLS~fvTpd-LARD---  144 (877)
T KOG1059|consen   76 HIVEVMSSSK---FQQKRIGYLAASQSFHDDTDVLML----TTNLLRKDLNSSNVYEVGLALSGLSCIVTPD-LARD---  144 (877)
T ss_pred             hhhhhhhhhh---hHHHHHhHHHHHHhhcCCccHHHH----HHHHHHHHhccCccchhhheecccccccCch-hhHH---
Confidence            1234443322   222222222222221111111111    111111 233444333345666666654322 1222   


Q ss_pred             hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 037562          364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKV  443 (670)
Q Consensus       364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~  443 (670)
                         .-+-++.+| .++.+-++..|..++..++...|    .....++|.|..-|.++|+.|+.+|..+++.++..++...
T Consensus       145 ---La~Dv~tLL-~sskpYvRKkAIl~lykvFLkYP----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  145 ---LADDVFTLL-NSSKPYVRKKAILLLYKVFLKYP----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             ---HHHHHHHHH-hcCchHHHHHHHHHHHHHHHhhh----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence               345677788 78888999999999998886543    3457889999999999999999999999999998877553


Q ss_pred             HHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH--Hh
Q 037562          444 QAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS--NI  520 (670)
Q Consensus       444 ~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~--~l  520 (670)
                      -     .+.|.+.++|.+. +.-+....+..+++|+.-.|...+     .+++.|..++.+..-..+..++..++.  ++
T Consensus       217 L-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  217 L-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSM  286 (877)
T ss_pred             c-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence            3     3557888888663 444777888888988876655443     578899999988733344455444443  33


Q ss_pred             hcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHH
Q 037562          521 TCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE  600 (670)
Q Consensus       521 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  600 (670)
                      ..+.++....+.  =++..|-.++.+.|++++.-++.|+..++.. .+.....     --+.+++++++.|+.+|..|+.
T Consensus       287 s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp~~Vqa-----~kdlIlrcL~DkD~SIRlrALd  358 (877)
T KOG1059|consen  287 SSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HPKAVQA-----HKDLILRCLDDKDESIRLRALD  358 (877)
T ss_pred             ccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CHHHHHH-----hHHHHHHHhccCCchhHHHHHH
Confidence            333222111111  1355677778899999999999999999875 4443333     3567889999999999999999


Q ss_pred             HHHHHHHh
Q 037562          601 GLENILKV  608 (670)
Q Consensus       601 ~l~~l~~~  608 (670)
                      .++.++..
T Consensus       359 Ll~gmVsk  366 (877)
T KOG1059|consen  359 LLYGMVSK  366 (877)
T ss_pred             HHHHHhhh
Confidence            99888754

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.64  E-value=1.7e-05  Score=83.98  Aligned_cols=354  Identities=14%  Similarity=0.126  Sum_probs=217.3

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 037562          242 AMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI  321 (670)
Q Consensus       242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  321 (670)
                      .+++.+.+.|.+.++.|..-|.+-...+ .-..+.--+..++..++++|++.+ .+||..|++|++-++..-++.+   +
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~---l   83 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ---L   83 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH---H
Confidence            6888888999999999988887654432 111111223346888999999999 8999999999999986222222   1


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh----cccCC-hhHHHHHHHHHHhhhc
Q 037562          322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL----NENAN-LSMLRTATWTLFNFCR  396 (670)
Q Consensus       322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l----~~~~~-~~~~~~a~~~L~~l~~  396 (670)
                      + ..++.|+.-+-+..+..|..+.-+|......-+..........+.+.+...+    ....+ ..++-.++-.+.....
T Consensus        84 e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   84 E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence            1 2355566654445555555444444333322222222222333344444333    22222 2355566666655444


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIR  475 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~  475 (670)
                      ....--..+..+++..++.-+.++...|+..++.+++.++...+..   .+. ++++.+.+-|..+ +......-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly~-~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LYV-ELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HHH-HHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            3322222244566677777788888999999999999998654322   121 4556666666553 3334445566777


Q ss_pred             HhhcCCchhhHHHHhCCChHHHHHhh---ccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc------
Q 037562          476 NIVKGDDFQTQCIINCGALPYFLDML---VHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN------  546 (670)
Q Consensus       476 ~l~~~~~~~~~~l~~~~~~~~L~~~l---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~------  546 (670)
                      .++........ ---...++.+.+..   +.. +.+.|+....++..+....|..+..... .++..+++.+..      
T Consensus       239 ~i~r~ag~r~~-~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFG-SHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhh-cccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            77664332211 11235778888888   556 8899999999999887765554432221 123333332210      


Q ss_pred             -----------------C-----------ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHH
Q 037562          547 -----------------T-----------EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVC  598 (670)
Q Consensus       547 -----------------~-----------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  598 (670)
                                       +           ++.||++|+.++..+... ..+....+.+. +-+.++.-++.....|+.-+
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHH
Confidence                             0           135999999999998875 55666665554 66888898999999999999


Q ss_pred             HHHHHHHHHhhh
Q 037562          599 LEGLENILKVGV  610 (670)
Q Consensus       599 ~~~l~~l~~~~~  610 (670)
                      +.++..++..-.
T Consensus       394 f~~yi~ll~qt~  405 (1233)
T KOG1824|consen  394 FHAYIALLKQTR  405 (1233)
T ss_pred             HHHHHHHHHcCC
Confidence            999988887543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=4.7e-05  Score=81.49  Aligned_cols=366  Identities=14%  Similarity=0.167  Sum_probs=234.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCcH----HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 037562          254 LQLEATTLFINLLSFDRSPPI----DEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF  329 (670)
Q Consensus       254 ~~~~a~~~L~~l~~~~~~~~~----~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L  329 (670)
                      -...++.+|.|+.+.+ .+..    .+..--|.++-+..++.....++++..|+.++..+.. +.++...++..|.+..|
T Consensus      1741 ~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence            4567888999998874 2221    1222346778888888765548999999999998887 88899999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC---CCCChhhh
Q 037562          330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK---PQPPFNQV  406 (670)
Q Consensus       330 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~  406 (670)
                      +.+|.+ -+..|+.++.+|..++... .......+.|++..+...+..+..++.+.+++..++.+..+.   |...+..+
T Consensus      1819 L~lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred             HHHHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence            999874 4678999999999998654 445556678889999998878888899999999999999876   33333333


Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH----HHHHHHHcCCHHHHHH-hcCC--C----CccchhHHHH---
Q 037562          407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND----KVQAVIEAGVYPRLVE-LLGH--S----SSSVLTPALR---  472 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~~~~i~~L~~-lL~~--~----~~~v~~~a~~---  472 (670)
                      ...-..++..++++.    +++..++..-.++++-    ....-+. +.+..++. +.+.  .    ++++-+..+.   
T Consensus      1897 kFLP~~f~d~~RD~P----EAaVH~fE~T~EnPELiWn~~~r~kvS-~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~E 1971 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSP----EAAVHMFESTSENPELIWNEVTRQKVS-GIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSE 1971 (2235)
T ss_pred             HhchHHHHHHHhcCH----HHHHHHHhccCCCcccccCHhHHHHHH-HHHHHHHHHHHHHhccCCcccccCchhhcchhh
Confidence            333334455554332    3333444333332210    0000000 11111111 1111  1    1222222211   


Q ss_pred             ----------HHHHhhcCCc--hhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHH
Q 037562          473 ----------TIRNIVKGDD--FQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGP  539 (670)
Q Consensus       473 ----------~L~~l~~~~~--~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~  539 (670)
                                .+..+..+..  -.....+-.+.++.+.+++..+. ....-..-..++..+.+..|.....+-.-|.+|.
T Consensus      1972 a~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK 2051 (2235)
T KOG1789|consen 1972 ADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPK 2051 (2235)
T ss_pred             hccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHH
Confidence                      1111111110  00111122345667777776541 2233344445556666667777777778899999


Q ss_pred             HHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562          540 IVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAV  619 (670)
Q Consensus       540 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  619 (670)
                      ++..+...+..+-..|+.+|-.++.  +......+.....+..++..++.. +.....|++++.+++......       
T Consensus      2052 ~~~Am~~~n~s~P~SaiRVlH~Lse--n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~e------- 2121 (2235)
T KOG1789|consen 2052 FCTAMCLQNTSAPRSAIRVLHELSE--NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGE------- 2121 (2235)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHHhh--ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHH-------
Confidence            9999987777777999999999988  567888888888888888888643 445568999999999854433       


Q ss_pred             CCccHHHHHHHHhchHHHHHHhhc
Q 037562          620 GDFNQYAQLVEEAEGLEKIENLQS  643 (670)
Q Consensus       620 ~~~~~~~~~~~~~g~~~~l~~L~~  643 (670)
                           ...+.-.+|.++.|-.|++
T Consensus      2122 -----LVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2122 -----LVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred             -----HHHHHhccCcHHHHHHHhc
Confidence                 2344448999999877753

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.59  E-value=2.1e-07  Score=93.39  Aligned_cols=264  Identities=15%  Similarity=0.121  Sum_probs=168.9

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC
Q 037562          324 GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC--RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP  401 (670)
Q Consensus       324 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  401 (670)
                      -++..++.+|+++.+.+|..|+...+.++..-..+  .+.+...|.  .|..-+ ....+++.-..+.++..+.......
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence            35678888999999999999999988886221111  112222221  233444 5567777776666666655443211


Q ss_pred             -ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 037562          402 -PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG  480 (670)
Q Consensus       402 -~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  480 (670)
                       -..-..+++|.|..+|++....++.+.+..++.++...++....--=..+-=-|+..|.+.+.++|.+|...++.++..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence             1223478999999999999999999999999999987765432111012223467778888899999999999988763


Q ss_pred             CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562          481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS  560 (670)
Q Consensus       481 ~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  560 (670)
                      -..       ..++..|+.-|+.. +...|.....+++-.+.       ...--.++|.|+.=...++..|+.-.+.+++
T Consensus       761 iGP-------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae-------~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~  825 (975)
T COG5181         761 IGP-------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAE-------YCGPFSVLPTLMSDYETPEANVQNGVLKAMC  825 (975)
T ss_pred             cCH-------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHh-------hcCchhhHHHHHhcccCchhHHHHhHHHHHH
Confidence            211       12344455555444 33333222223332222       1112246788887777888999999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          561 NATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       561 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                      .+..........++..  ..|.|.+.+.+.|+--+..+...+..+.-
T Consensus       826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~L  870 (975)
T COG5181         826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVL  870 (975)
T ss_pred             HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence            9887543344444433  56778888888888877777777666543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.8e-05  Score=73.87  Aligned_cols=348  Identities=15%  Similarity=0.147  Sum_probs=225.6

Q ss_pred             hhhHHHHhhcchhhhhhccccCCCccccchhhhh--hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562          203 TTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSK--LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS  280 (670)
Q Consensus       203 ~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  280 (670)
                      ++++-+.+++..-++.+.++.....     +...  .+.++.++..+..+|.++...|...+..++..  .+....++++
T Consensus        96 asVKiLackqigcilEdcDtnaVse-----illvvNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeS  168 (524)
T KOG4413|consen   96 ASVKILACKQIGCILEDCDTNAVSE-----ILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFES  168 (524)
T ss_pred             chhhhhhHhhhhHHHhcCchhhHHH-----HHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhccc
Confidence            4678888888888888877543221     1111  25689999999999999999999999999776  5666677776


Q ss_pred             CCHHHH--HHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch
Q 037562          281 GVVPRF--VEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPR  357 (670)
Q Consensus       281 g~l~~L--~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~  357 (670)
                      .....+  ..+-...+ +-+|......+..+..-+++.....-..|.+..|..-++. .+.-++..++.....++... .
T Consensus       169 ellDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete-H  246 (524)
T KOG4413|consen  169 ELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE-H  246 (524)
T ss_pred             ccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-h
Confidence            665544  33333444 5778888889999988899999999999999999888876 77888889999998888543 3


Q ss_pred             hHHHHHhcCChHHHHHHhcccC-ChhHHHHHHHHHHhhhcCC------CCCChhhhhhhHHHHHHhhccCChhHHHHHHH
Q 037562          358 CRDLVLSQGALIPLLAELNENA-NLSMLRTATWTLFNFCRGK------PQPPFNQVRPALPVLAQLIRSNDEEVLTDACW  430 (670)
Q Consensus       358 ~~~~i~~~~~i~~Ll~~l~~~~-~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~  430 (670)
                      .++.+.+.|.+..+.+.+.... ++--.-.++.....+....      +...-....-.+.....++..+|++.+..|+.
T Consensus       247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiD  326 (524)
T KOG4413|consen  247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAID  326 (524)
T ss_pred             hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHH
Confidence            4778888888888888884332 2322223444444443332      11111111234455567778899999999999


Q ss_pred             HHHHhccCChHHHHHHHHcCC--HHHHHHhcCCC-CccchhHHHHHHHHhhcCC---chhh----------HHHHh----
Q 037562          431 ALSYLSDGTNDKVQAVIEAGV--YPRLVELLGHS-SSSVLTPALRTIRNIVKGD---DFQT----------QCIIN----  490 (670)
Q Consensus       431 ~L~~l~~~~~~~~~~~~~~~~--i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~---~~~~----------~~l~~----  490 (670)
                      +++.+..+..+ .+.+...|-  ...++.-.-+. ...-+..++.+|.+++...   ++++          ..+++    
T Consensus       327 alGilGSnteG-adlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaq  405 (524)
T KOG4413|consen  327 ALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQ  405 (524)
T ss_pred             HHHhccCCcch-hHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhh
Confidence            99999866543 344555442  33343333333 3345677888888887532   1110          11111    


Q ss_pred             ---CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC---ChhHHHHHHHHHHH
Q 037562          491 ---CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT---EFDTKKEAAWAISN  561 (670)
Q Consensus       491 ---~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~  561 (670)
                         ..-...+..+++.+ .++++-.+..++..++...-.....+-+.+++..+.+.-...   ..+.+.+++.|+.+
T Consensus       406 stkldPleLFlgilqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiae  481 (524)
T KOG4413|consen  406 STKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE  481 (524)
T ss_pred             ccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence               12345566777777 899999999999999765333333444667777666643321   13445555555544

>TIGR02270 conserved hypothetical protein

Probab=98.56  E-value=1.7e-05  Score=80.42  Aligned_cols=242  Identities=18%  Similarity=0.031  Sum_probs=170.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      .++.++..+......+++..++.++.....  +         .++..++..|.+.++.++..++.+|+.+-  .+     
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~-----  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--GR-----  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch-----
Confidence            577888888543337887776666643321  1         13789999999999999999999998763  22     


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND  441 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  441 (670)
                          ...+.|+..+ .+.++.++..++.++.....           ...+.+..+|++.++.|+..++.+++.+...   
T Consensus       117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---  177 (410)
T TIGR02270       117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR---  177 (410)
T ss_pred             ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence                2467788888 77888898888877766221           2346788889999999999999999988643   


Q ss_pred             HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562          442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT  521 (670)
Q Consensus       442 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~  521 (670)
                              ..++.|...+.+.++.||..|+..++.+-.  +         ..+..+..+.... .......+..++... 
T Consensus       178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~-  236 (410)
T TIGR02270       178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA-  236 (410)
T ss_pred             --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence                    345667788999999999999999977633  2         1234555544444 333443333344333 


Q ss_pred             cCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHH
Q 037562          522 CGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEG  601 (670)
Q Consensus       522 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~  601 (670)
                       +.+         ..++.|..+++++  .++..++.+++.+...   .         .++.|+..+++.  .++..|-.+
T Consensus       237 -~~~---------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p---~---------av~~L~~~l~d~--~~aR~A~eA  290 (410)
T TIGR02270       237 -GGP---------DAQAWLRELLQAA--ATRREALRAVGLVGDV---E---------AAPWCLEAMREP--PWARLAGEA  290 (410)
T ss_pred             -Cch---------hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc---c---------hHHHHHHHhcCc--HHHHHHHHH
Confidence             222         3567778887754  4999999999987663   2         688888888644  389999999


Q ss_pred             HHHHHH
Q 037562          602 LENILK  607 (670)
Q Consensus       602 l~~l~~  607 (670)
                      +..|.-
T Consensus       291 ~~~ItG  296 (410)
T TIGR02270       291 FSLITG  296 (410)
T ss_pred             HHHhhC
Confidence            998864

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=6.5e-05  Score=78.32  Aligned_cols=251  Identities=16%  Similarity=0.166  Sum_probs=152.4

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      -+|..++...+++.+++.-..-.|.+.|...  +....    =-+..+-+-|.+++ +.+|..|++++..+-.   ....
T Consensus        72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq--pdLAL----LSIntfQk~L~DpN-~LiRasALRvlSsIRv---p~Ia  141 (968)
T KOG1060|consen   72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ--PDLAL----LSINTFQKALKDPN-QLIRASALRVLSSIRV---PMIA  141 (968)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcC--CCcee----eeHHHHHhhhcCCc-HHHHHHHHHHHHhcch---hhHH
Confidence            3667777777777777777766676666553  11111    13667777888888 8888888888877643   1111


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                      .+    ++-++-+...++++.||..|+-++-.+-.-+++.+..      +..++..|..+.++-|.-.|+.++-.+|-+.
T Consensus       142 PI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q------L~e~I~~LLaD~splVvgsAv~AF~evCPer  211 (968)
T KOG1060|consen  142 PI----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ------LEEVIKKLLADRSPLVVGSAVMAFEEVCPER  211 (968)
T ss_pred             HH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH------HHHHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence            11    1223344556788889998888888887666664443      3345555557788888888888888777542


Q ss_pred             CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC---hHH----------------------HHHHHHc---C
Q 037562          399 PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT---NDK----------------------VQAVIEA---G  450 (670)
Q Consensus       399 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~---~~~----------------------~~~~~~~---~  450 (670)
                          ...+.+-...+..+|.+-++--+..++..|...++..   +..                      .....+.   -
T Consensus       212 ----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l  287 (968)
T KOG1060|consen  212 ----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL  287 (968)
T ss_pred             ----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence                3334455555666665545444444555554443210   000                      0000000   1


Q ss_pred             CHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          451 VYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       451 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      +++..-.++++.++.|...++.+...++-.+  ..     ..+++.|+.+|.+.  .++|......+..++.
T Consensus       288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~-----~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~  350 (968)
T KOG1060|consen  288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QV-----TKIAKALVRLLRSN--REVQYVVLQNIATISI  350 (968)
T ss_pred             HHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HH-----HHHHHHHHHHHhcC--CcchhhhHHHHHHHHh
Confidence            3455556778889999999999999988633  11     23577888888665  4566666666665554

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=0.00018  Score=77.21  Aligned_cols=367  Identities=16%  Similarity=0.184  Sum_probs=231.2

Q ss_pred             hhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC
Q 037562          204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGV  282 (670)
Q Consensus       204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~  282 (670)
                      +--.+.+..+++++.......+.-.+.   ..-++.++-+...+. ..++.++.-|+.++..+.+.  .+....+.+.|.
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe---~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~v 1814 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSE---ILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNV 1814 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccch---hhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhH
Confidence            344567888888888877665444331   234577788888887 57889999999999888765  788889999999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---chh
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDS---PRC  358 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~---~~~  358 (670)
                      +..|+.+|.+.  |..|..++.+|..++. +++......+.|++..+..++- +.++..|.+|+..++.+..+.   |..
T Consensus      1815 L~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV 1891 (2235)
T KOG1789|consen 1815 LTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRV 1891 (2235)
T ss_pred             HHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCce
Confidence            99999998765  4889999999999998 7888888888888888887654 577899999999999998543   222


Q ss_pred             HHHHHhcCChHH-HHHHhcccCChhHHHHHHHHHHhhhcCCCC----CChhhhhhhHHHHH-Hhhcc--CChhHH----H
Q 037562          359 RDLVLSQGALIP-LLAELNENANLSMLRTATWTLFNFCRGKPQ----PPFNQVRPALPVLA-QLIRS--NDEEVL----T  426 (670)
Q Consensus       359 ~~~i~~~~~i~~-Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~i~~L~-~lL~~--~~~~v~----~  426 (670)
                      +-.++.  ++|. ++..+++++     +.+..++-.-..++.-    ......++.+..++ ++.+.  .++.+.    +
T Consensus      1892 ~ITL~k--FLP~~f~d~~RD~P-----EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PE 1964 (2235)
T KOG1789|consen 1892 TITLIK--FLPEIFADSLRDSP-----EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPE 1964 (2235)
T ss_pred             eeehHH--hchHHHHHHHhcCH-----HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCch
Confidence            222211  2332 223332221     2333333332222210    01111233333322 22221  111111    0


Q ss_pred             HHH-----------H--HHHHhccCCh---HHHHHHHHcCCHHHHHHhcCCCCcc--chhHHHHHHHHhhcCCchhhHHH
Q 037562          427 DAC-----------W--ALSYLSDGTN---DKVQAVIEAGVYPRLVELLGHSSSS--VLTPALRTIRNIVKGDDFQTQCI  488 (670)
Q Consensus       427 ~al-----------~--~L~~l~~~~~---~~~~~~~~~~~i~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~l  488 (670)
                      ..+           .  .++.....+.   ..-..++ .+.++.+..++..+++.  .-..-..++-.+....+.....+
T Consensus      1965 qsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL-~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqi 2043 (2235)
T KOG1789|consen 1965 QSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFL-TELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQL 2043 (2235)
T ss_pred             hhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHH-HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhC
Confidence            000           0  0011110000   0001112 25667777777765543  22223334445555566667767


Q ss_pred             HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH
Q 037562          489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH  568 (670)
Q Consensus       489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  568 (670)
                      -..|.+|.++..+... +..+-..|...+..++. +.-....+.....+..++..+.. ......-|+.+|..+......
T Consensus      2044 p~LGylPK~~~Am~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~ 2120 (2235)
T KOG1789|consen 2044 PSLGYLPKFCTAMCLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTG 2120 (2235)
T ss_pred             CCccchHHHHHHHHhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHH
Confidence            7789999999999887 66677888999998865 35556666666677777777653 345556899999999887666


Q ss_pred             HHHHHHHHcCCcHHHHhhccC
Q 037562          569 EQIKHLVREGCVKPLCDLLLC  589 (670)
Q Consensus       569 ~~~~~l~~~~~i~~L~~ll~~  589 (670)
                      +........|.++.|.++++.
T Consensus      2121 eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2121 ELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             HHHHHHhccCcHHHHHHHhcc
Confidence            777777889999999999954

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.51  E-value=1.4e-05  Score=80.76  Aligned_cols=337  Identities=13%  Similarity=0.102  Sum_probs=209.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN--TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      ++..++..|++.. +.+|.+|+...+.++.--..+  .+.+...|  ..|.+.|....+++.-..+.+++.+.....--.
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            4556677888888 899999999888876511100  11222222  245566777788888777777766652211000


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhh-hhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ-VRPALPVLAQLIRSNDEEVLTDACWALSYLSDG  438 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~  438 (670)
                      ..---.|.+|.+.-.| .+....++.+....+..++...|...-.. ...+.=.|+.+|.+-+.+++.+|..+++.++..
T Consensus       682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            0001245788888888 67778899999999999998876533222 234445578888999999999999999998854


Q ss_pred             ChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562          439 TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS  518 (670)
Q Consensus       439 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~  518 (670)
                      -..       .+++..|+.-|+..+-..|....-+|+-.+..+.       -..++|.|+.=...+ +..|+.....+++
T Consensus       761 iGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam~  825 (975)
T COG5181         761 IGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAMC  825 (975)
T ss_pred             cCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHHH
Confidence            322       1345556666665555555555555554443221       123566666666666 7788888888888


Q ss_pred             HhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH-HHHHHHcCCcHHHHhhccCCChHHHH
Q 037562          519 NITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ-IKHLVREGCVKPLCDLLLCADPKIVT  596 (670)
Q Consensus       519 ~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~  596 (670)
                      .+... ......++.  .+.|.|-+.+.+.|+--|..|...+.+++.++.-.. ...++.  .+..|..-+-.+.|.+..
T Consensus       826 fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~  901 (975)
T COG5181         826 FMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQ  901 (975)
T ss_pred             HHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHH
Confidence            77552 122222332  367788888999999999999999999988642111 111111  122233333567788877


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          597 VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       597 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ....++..+...-..               ..|     ...+++=+-|++..|++.+=.+.+.+|
T Consensus       902 ~~~Eg~e~~~~~lg~---------------g~~-----m~Yv~qGLFHPs~~VRk~ywtvyn~my  946 (975)
T COG5181         902 SFDEGMESFATVLGS---------------GAM-----MKYVQQGLFHPSSTVRKRYWTVYNIMY  946 (975)
T ss_pred             HHHHHHHHHHHHhcc---------------HHH-----HHHHHHhccCchHHHHHHHHHHHhhhh
Confidence            777777665432111               011     345666677888888877766665554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.50  E-value=2.3e-06  Score=68.89  Aligned_cols=154  Identities=9%  Similarity=-0.005  Sum_probs=125.5

Q ss_pred             ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH
Q 037562          493 ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK  572 (670)
Q Consensus       493 ~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  572 (670)
                      .+..|+.-.....+.+.++....-|+|++- +|.+...+.+.++++.+++.+..++..+++.++.+|+|++.  ++...+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            456666666666688899999999999954 57788889999999999999999999999999999999998  788899


Q ss_pred             HHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 037562          573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK  652 (670)
Q Consensus       573 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  652 (670)
                      .+.+.++++.++..++++...+...++.++..+...+.             ..++.+-.--.++.++.+..+.+.+.+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R-------------t~r~ell~p~Vv~~v~r~~~s~s~~~rnL  160 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER-------------TERDELLSPAVVRTVQRWRESKSHDERNL  160 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc-------------chhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999998888888776543222             23445555666777888877777888888


Q ss_pred             HHHHHHHhcC
Q 037562          653 AVEILETYWS  662 (670)
Q Consensus       653 a~~~l~~~~~  662 (670)
                      |...++.+..
T Consensus       161 a~~fl~~~~~  170 (173)
T KOG4646|consen  161 ASAFLDKHVH  170 (173)
T ss_pred             HHHHHHhhcc
Confidence            8888887653

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=3.2e-05  Score=71.86  Aligned_cols=271  Identities=13%  Similarity=0.187  Sum_probs=173.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVI--QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +..+++++.+.++.++..|...+..+...    ..+.+.  +.-.++.+.+++...+ +  ...|+.++.|++. +...+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence            45788899999999999999988877544    112121  2235778888888877 4  7789999999998 77888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-----CChHHHHHHhcccC-Ch-hHHHHHHHH
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAELNENA-NL-SMLRTATWT  390 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~i~~Ll~~l~~~~-~~-~~~~~a~~~  390 (670)
                      +.++.. .+..++..+.++...+....+..|.|++.+...........     .++..++....+.. +. .-..+.+.+
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            888876 77888888888877888899999999998877665544332     23444444332322 21 234577788


Q ss_pred             HHhhhcCCCCCChhhhhhh--HHHHHHhhccCChhHHHH-HHHHHHHhccCChHHHHHHHHc--CCHHHHH---------
Q 037562          391 LFNFCRGKPQPPFNQVRPA--LPVLAQLIRSNDEEVLTD-ACWALSYLSDGTNDKVQAVIEA--GVYPRLV---------  456 (670)
Q Consensus       391 L~~l~~~~~~~~~~~~~~~--i~~L~~lL~~~~~~v~~~-al~~L~~l~~~~~~~~~~~~~~--~~i~~L~---------  456 (670)
                      ++|+++....+........  .+.+..+-. .+..+|.. .+.+|.|.+........ +++.  .+++.++         
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence            8888887644433333222  233444433 45555543 66778887744332222 2221  1222222         


Q ss_pred             ------------HhcC-----CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          457 ------------ELLG-----HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       457 ------------~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                                  +++.     .+++.+|..-+.+|..++.. ...++.+...|+.+.+-.+=+...++++++..-.....
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                        2222     24567999999999999873 44566677778777777776666466666655555544


Q ss_pred             hhc
Q 037562          520 ITC  522 (670)
Q Consensus       520 l~~  522 (670)
                      +..
T Consensus       313 Lv~  315 (353)
T KOG2973|consen  313 LVR  315 (353)
T ss_pred             HHh
Confidence            544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=4.5e-06  Score=89.15  Aligned_cols=248  Identities=17%  Similarity=0.195  Sum_probs=192.3

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +.+|.+++.|-|.-  -+..|+..|...+... ...+.....-|++|.++++|+++. .+++..-+.+.+.|..-++.+.
T Consensus       472 eQLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            45677777664332  3456777777776654 666777788999999999999999 8999999999999888789999


Q ss_pred             HHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562          318 KVVIDHGAVPIFVKLLAS---PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF  394 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  394 (670)
                      ..+++.++-..+++.|..   -+++-|..|+.+|+.++.+-+..++...+.+.+...+..+.++..+-++.-++-+|..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            999998888999998876   24688899999999999888888888889888888888885545567777899999999


Q ss_pred             hcCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHcCCH---HH
Q 037562          395 CRGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSDG----TNDKVQAV------------IEAGVY---PR  454 (670)
Q Consensus       395 ~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~~~~~~~------------~~~~~i---~~  454 (670)
                      -.+.+..+..-. .++...|..+|.++-++||.+|+.+|+.+..+    .+++...+            .+.-..   ..
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            888755554443 67888999999999999999999999998865    23332222            221112   36


Q ss_pred             HHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562          455 LVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII  489 (670)
Q Consensus       455 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  489 (670)
                      ++..++++.+-++.+...++..++.+.......++
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            77778888888999999999998887665555443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.48  E-value=4.7e-05  Score=77.06  Aligned_cols=251  Identities=25%  Similarity=0.263  Sum_probs=177.9

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..++.+++.+.+++..++..|+..+..+...            ..++.+..++.+.+ +.+|..|+.+|+.+-.      
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~------  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD------  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC------
Confidence            4578899999988999999999998766432            26899999999999 8999999999988864      


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC---------Ch--hHHH
Q 037562          318 KVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA---------NL--SMLR  385 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~---------~~--~~~~  385 (670)
                           ...++.++.++. +++..+|..+.++|+.+-...           .+.+++..+.+..         .+  .++.
T Consensus       104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                 236889999998 599999999999999984221           3677777774332         01  3455


Q ss_pred             HHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc
Q 037562          386 TATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS  465 (670)
Q Consensus       386 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  465 (670)
                      .+...+..+-..          ..++.+..++.+.+..++..+..+++.+....         ..+...+...+.+++..
T Consensus       168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            666666655543          35677888888888888888888888877543         23446777888888888


Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562          466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ  545 (670)
Q Consensus       466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~  545 (670)
                      ++..++..++.+-..           .....+...+.+. +..++..+.......  ..         ......+...+.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhh
Confidence            888888888766431           2455677777777 666665555555411  00         112334445555


Q ss_pred             cCChhHHHHHHHHHHHhcCC
Q 037562          546 NTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       546 ~~~~~v~~~a~~aL~~l~~~  565 (670)
                      +.+..++..+..++......
T Consensus       286 ~~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         286 DEANAVRLEAALALGQIGQE  305 (335)
T ss_pred             cchhhHHHHHHHHHHhhccc
Confidence            66777888888877777664

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=2.1e-05  Score=78.75  Aligned_cols=318  Identities=12%  Similarity=0.098  Sum_probs=198.7

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +.++.++....+.|..++..|+..+.|++...+.+  ....-..+...+.++..+++ ..++.. +..+-.+..+-...+
T Consensus        84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~--v~~~Fn~iFdvL~klsaDsd-~~V~~~-aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE--VLVYFNEIFDVLCKLSADSD-QNVRGG-AELLDRLIKDIVTES  159 (675)
T ss_pred             HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC--cccchHHHHHHHHHHhcCCc-cccccH-HHHHHHHHHHhcccc
Confidence            34778888888889999999999999997753222  11222335667777777776 455543 344443332111111


Q ss_pred             H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562          318 K-VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVL-SQGALIPLLAELNENANLSMLRTATWTLFNFC  395 (670)
Q Consensus       318 ~-~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  395 (670)
                      + .+--.+++|.+-.-+...++..|...+.-|..+-.. |. .+.+- -...++.|++.+ .+.+.+++..+-.++.++.
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-Cc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence            1 222223445555555557888888777767666432 22 22221 113466677777 6777788876666666655


Q ss_pred             cCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc-chhHHHHH
Q 037562          396 RGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS-VLTPALRT  473 (670)
Q Consensus       396 ~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-v~~~a~~~  473 (670)
                      ..- ..+...-....++.++.-++++++.++..|+.-+..+....+... ...-+|++..+++++.+..+. ++..+...
T Consensus       237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~  315 (675)
T KOG0212|consen  237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMV  315 (675)
T ss_pred             HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence            332 122222346678889999999999999998888877775544332 244558888999999887764 44444333


Q ss_pred             H---HHhhcCCchhhHHHHhC-CChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCCh
Q 037562          474 I---RNIVKGDDFQTQCIINC-GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEF  549 (670)
Q Consensus       474 L---~~l~~~~~~~~~~l~~~-~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  549 (670)
                      -   ..+...... ... ++. .+++.+...+.++ ..+.|..+..-+..+-...+.+.- .....+++.|...+.+.+.
T Consensus       316 n~~l~~l~s~~~~-~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd  391 (675)
T KOG0212|consen  316 NGLLLKLVSSERL-KEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSD  391 (675)
T ss_pred             HHHHHHHHhhhhh-ccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchh
Confidence            2   222221111 111 222 3577888888888 888888887666666443333222 2245688999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCC
Q 037562          550 DTKKEAAWAISNATKFGT  567 (670)
Q Consensus       550 ~v~~~a~~aL~~l~~~~~  567 (670)
                      +|...+...+.+++....
T Consensus       392 ~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  392 EVVLLALSLLASICSSSN  409 (675)
T ss_pred             HHHHHHHHHHHHHhcCcc
Confidence            999999999999998643

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.47  E-value=8e-05  Score=75.38  Aligned_cols=249  Identities=22%  Similarity=0.268  Sum_probs=177.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      ..++.+.+++.+.+ ..++..|+..++.+..           ...++.+..++.+.++.+|..|+.+|+.+-  .+.   
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---  105 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE---  105 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence            36788899999997 8999999999888765           346899999999999999999999999873  222   


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCCh------------hHHHHH
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDE------------EVLTDA  428 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~v~~~a  428 (670)
                            .++.++..+..+.+..++..+.++|..+-...          .+..++..+++...            .++..+
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                  58889999966788899999999999888753          35667777766542            355555


Q ss_pred             HHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchh
Q 037562          429 CWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEES  508 (670)
Q Consensus       429 l~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~  508 (670)
                      +..++.+...           ..++.+...+.+.+..+|..|..+++.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            5555554321           34567778888877788888888888887643         23456677777777 888


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc
Q 037562          509 IKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL  588 (670)
Q Consensus       509 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  588 (670)
                      +|..++.+++.+-..           ..+..+...+.+.+..++..+..++...-.   .         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGALDL---A---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhcccCc---h---------hhHHHHHHHhh
Confidence            888888888777332           234566777777777777766666652211   1         12444555566


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 037562          589 CADPKIVTVCLEGLENIL  606 (670)
Q Consensus       589 ~~~~~v~~~a~~~l~~l~  606 (670)
                      +.+..++..+..++..+.
T Consensus       286 ~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         286 DEANAVRLEAALALGQIG  303 (335)
T ss_pred             cchhhHHHHHHHHHHhhc
Confidence            666677766666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.47  E-value=4.6e-07  Score=89.94  Aligned_cols=135  Identities=21%  Similarity=0.300  Sum_probs=86.0

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      ++..|.|++| +|+.+|.    ..++|++|.+++|.+|..+|...  .++|++|.|++|.+++.+   +     ++|+.|
T Consensus        53 ~l~~L~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL---P-----~sLe~L  117 (426)
T PRK15386         53 ASGRLYIKDC-DIESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL---P-----ESVRSL  117 (426)
T ss_pred             CCCEEEeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc---c-----cccceE
Confidence            7888888888 6777762    34578888888888887766432  357888888888777654   1     346666


Q ss_pred             cccc--ccccceeccccccccccccccccccccccccccccccccccCCcccCC-CCccEEeEecCCCccccccCCcCCC
Q 037562          103 EIES--CDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTF-PSLEILVVNYCPNMKIFSGGELSTP  179 (670)
Q Consensus       103 ~i~~--c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~i~~C~~l~~~p~~~~~~~  179 (670)
                      .+.+  |..+..+              .++|+.|.+.+.........   ...+ ++|+.|.+.+|..+. +|.++  ++
T Consensus       118 ~L~~n~~~~L~~L--------------PssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c~~i~-LP~~L--P~  177 (426)
T PRK15386        118 EIKGSATDSIKNV--------------PNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGCSNII-LPEKL--PE  177 (426)
T ss_pred             EeCCCCCcccccC--------------cchHhheecccccccccccc---ccccCCcccEEEecCCCccc-Ccccc--cc
Confidence            6642  2223222              34678887754332211111   1123 579999999999764 56543  36


Q ss_pred             CccceeeeeccCC
Q 037562          180 NLHKVQLSRWDGE  192 (670)
Q Consensus       180 ~L~~l~i~~~~~~  192 (670)
                      +|+.|+++.....
T Consensus       178 SLk~L~ls~n~~~  190 (426)
T PRK15386        178 SLQSITLHIEQKT  190 (426)
T ss_pred             cCcEEEecccccc
Confidence            9999988654333

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=0.00013  Score=67.84  Aligned_cols=270  Identities=14%  Similarity=0.158  Sum_probs=176.5

Q ss_pred             hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHH
Q 037562          368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAV  446 (670)
Q Consensus       368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~  446 (670)
                      ...++.++ .+.++.++..|...+..++.. +....... ...++.+.+++...++  ...|+.++.|++.... ....+
T Consensus         5 l~elv~ll-~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~l   79 (353)
T KOG2973|consen    5 LVELVELL-HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKL   79 (353)
T ss_pred             HHHHHHHh-ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHH
Confidence            34567777 788899999999999888877 22222222 4567888889887776  7788999999997643 44556


Q ss_pred             HHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH--h----CCChHHHHHhhccCCchh-HHHHHHHHHHH
Q 037562          447 IEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII--N----CGALPYFLDMLVHNHEES-IKKEVSWIISN  519 (670)
Q Consensus       447 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~--~----~~~~~~L~~~l~~~~~~~-v~~~a~~~L~~  519 (670)
                      ++. ++..++..+.++.......++..+.|++...+.....+.  .    .|.+.......+.+.+.. --...+.+++|
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            665 888899999988888999999999999986654433222  2    455555555555442211 12345667777


Q ss_pred             hhcCCHHHHHHHHhcCChH--HHHHHhhcCChhHHH-HHHHHHHHhcCCCCHHHHHHHHHcCCcHHH-------------
Q 037562          520 ITCGNREQIQAVIDSGLIG--PIVNLLQNTEFDTKK-EAAWAISNATKFGTHEQIKHLVREGCVKPL-------------  583 (670)
Q Consensus       520 l~~~~~~~~~~l~~~~~i~--~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L-------------  583 (670)
                      ++.. +..+..+.+...++  .+.. +.+.+..+|+ ..++.|.|++..  ......++. ..+..|             
T Consensus       159 ls~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd--~~~h~~lL~-e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  159 LSQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFD--AKLHEVLLD-ESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             Hhhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhcc--chhHHHHhc-chHHHHHHHHhhcCCcccc
Confidence            7553 44455555544322  2222 2334555554 567777776653  222222222 111111             


Q ss_pred             -----------Hhhc-----cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHh-hcCCC
Q 037562          584 -----------CDLL-----LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENL-QSHDD  646 (670)
Q Consensus       584 -----------~~ll-----~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L-~~~~~  646 (670)
                                 .+++     ..++++++...+.+|..++.-              ...++.++.-|+...+..+ ...++
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--------------~~GRe~lR~kgvYpilRElhk~e~d  299 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--------------RAGREVLRSKGVYPILRELHKWEED  299 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--------------hHhHHHHHhcCchHHHHHHhcCCCc
Confidence                       1333     356789999999998877642              2357889999999999888 55688


Q ss_pred             HHHHHHHHHHHHHhcC
Q 037562          647 NGISEKAVEILETYWS  662 (670)
Q Consensus       647 ~~v~~~a~~~l~~~~~  662 (670)
                      ++++..+.++.+....
T Consensus       300 ed~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  300 EDIREACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999888876654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.41  E-value=9.8e-05  Score=74.14  Aligned_cols=308  Identities=16%  Similarity=0.103  Sum_probs=195.0

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCCh-hHHHHHHHHHHhhhcCCCCCCh
Q 037562          325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANL-SMLRTATWTLFNFCRGKPQPPF  403 (670)
Q Consensus       325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~-~~~~~a~~~L~~l~~~~~~~~~  403 (670)
                      ..+.+..++-+++.+++..+.+++..+..+... -..+.+.+.-.-++.-+..+.+. .=+.+|...+..+..... ...
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~  103 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK  103 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc
Confidence            444555444455599999999999998876554 45566666544455556444333 346688888888887632 223


Q ss_pred             hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 037562          404 NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF  483 (670)
Q Consensus       404 ~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  483 (670)
                      ....+++..++.+..+.++..+..++.+++.++-.+++   .+...|++..+...+.++..++....+.++..+.. .+.
T Consensus       104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~  179 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPR  179 (371)
T ss_pred             cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccc
Confidence            34578889999999999999999999999999977664   47788999999999988766677778888888876 344


Q ss_pred             hhHHHHhCCChHHHHHhhccC------Cch--hHHHHHHHHHHHhhcCCHHHHHHHHhc-CChHHHHHHhhcCChhHHHH
Q 037562          484 QTQCIINCGALPYFLDMLVHN------HEE--SIKKEVSWIISNITCGNREQIQAVIDS-GLIGPIVNLLQNTEFDTKKE  554 (670)
Q Consensus       484 ~~~~l~~~~~~~~L~~~l~~~------~~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~  554 (670)
                      .++.+...--++.++..+.+.      .+.  +.-..+..++..+...-+-......+. ..+..|++.+..+++++|..
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            444444333455555554333      122  234455556665544322221111222 46888999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHH------cCCcHHHHhhc---c----------CCChHHHHHHHHHHHHHHHhhhhhhcc
Q 037562          555 AAWAISNATKFGTHEQIKHLVR------EGCVKPLCDLL---L----------CADPKIVTVCLEGLENILKVGVAEMNT  615 (670)
Q Consensus       555 a~~aL~~l~~~~~~~~~~~l~~------~~~i~~L~~ll---~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~  615 (670)
                      ....+..+..-..+.-...+..      -|-+..-.++.   .          ....++...-...              
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aL--------------  325 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLAL--------------  325 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHH--------------
Confidence            9999999887543321111111      11110000000   0          0011111111111              


Q ss_pred             CCCCCCccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 037562          616 GTAVGDFNQYAQLVEEAEGLEKIENLQSHD-DNGISEKAVEILETYW  661 (670)
Q Consensus       616 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~~l~~~~  661 (670)
                               ....+.++|.++.|.++..+. ++.+..+|.-+|.+++
T Consensus       326 ---------ll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  326 ---------LLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             ---------HHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence                     234577999999998886655 8899999999888775

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=6.8e-06  Score=83.69  Aligned_cols=219  Identities=12%  Similarity=0.120  Sum_probs=149.6

Q ss_pred             HHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC-----hHHH-H
Q 037562          371 LLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT-----NDKV-Q  444 (670)
Q Consensus       371 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~-----~~~~-~  444 (670)
                      ++.+. .+.|..|+.+|+..+..|....     .....+....++++.+++..||..|+..+...+...     .+.. .
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 7888899999999998888753     222446677889999999999999977666554322     1111 1


Q ss_pred             HHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh--hc
Q 037562          445 AVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI--TC  522 (670)
Q Consensus       445 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l--~~  522 (670)
                      .+.+ .++..+...+.+.+..||..|+.+++.+-.-..+...+..+..++..+-..=..      .+......++-  ++
T Consensus       277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a------hkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA------HKRPKALYSSGEWSS  349 (823)
T ss_pred             hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc------ccchHHHHhcCCccc
Confidence            2333 678889999999999999999999998876555544444333222211111000      00011111111  11


Q ss_pred             -----------CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC
Q 037562          523 -----------GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD  591 (670)
Q Consensus       523 -----------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  591 (670)
                                 ..++....++..|.-..++.-++++=.+||+.|+..++.++.. +|.+...     .++.|++++.++.
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHH
Confidence                       1122334567778888888888888889999999999999986 5555544     7899999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 037562          592 PKIVTVCLEGLENILKV  608 (670)
Q Consensus       592 ~~v~~~a~~~l~~l~~~  608 (670)
                      .+||..|+.+|..|...
T Consensus       424 ~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988765

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=0.0001  Score=75.57  Aligned_cols=346  Identities=15%  Similarity=0.105  Sum_probs=209.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV  362 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  362 (670)
                      .|.+-+.|++..+..++....-.-+.++.+-.......  ..++..+..-+..+++.+++....+|..+.........  
T Consensus        57 ~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~--~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~--  132 (569)
T KOG1242|consen   57 KPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRP--ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG--  132 (569)
T ss_pred             HHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcch--hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH--
Confidence            34444555544335666666655555555322222222  23577888888999999999988888777532211100  


Q ss_pred             HhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHH-HHHHH----HHhcc
Q 037562          363 LSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTD-ACWAL----SYLSD  437 (670)
Q Consensus       363 ~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~-al~~L----~~l~~  437 (670)
                        ..+.+-+.+++ ...+..-+..+.+.++.+..+. ........+.+..+...+.+........ ++.+.    .++..
T Consensus       133 --~~~l~~l~~ll-~~~~~~~~~~aa~~~ag~v~g~-~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~  208 (569)
T KOG1242|consen  133 --EYVLELLLELL-TSTKIAERAGAAYGLAGLVNGL-GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP  208 (569)
T ss_pred             --HHHHHHHHHHh-ccccHHHHhhhhHHHHHHHcCc-HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC
Confidence              01244555666 5777788889999999998875 2223334677788888887665443332 22222    22221


Q ss_pred             CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch-hhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562          438 GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF-QTQCIINCGALPYFLDMLVHNHEESIKKEVSWI  516 (670)
Q Consensus       438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~  516 (670)
                      ..+..   +  ..+++.+.....+....+|..|..+...+....+. ..+     -+++.++.-+... ....+..++..
T Consensus       209 ~~EPy---i--v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----~llpsll~~l~~~-kWrtK~aslel  277 (569)
T KOG1242|consen  209 PFEPY---I--VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-----LLLPSLLGSLLEA-KWRTKMASLEL  277 (569)
T ss_pred             CCCch---H--HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-----HhhhhhHHHHHHH-hhhhHHHHHHH
Confidence            11111   1  13556666666677788999888887776654332 222     2345555555555 56778889999


Q ss_pred             HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH--------------------
Q 037562          517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR--------------------  576 (670)
Q Consensus       517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------------------  576 (670)
                      ++.++...+.+..... ..++|.+.+.+.+..+++|+.+..++.++...-+...+..++.                    
T Consensus       278 lg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L  356 (569)
T KOG1242|consen  278 LGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSL  356 (569)
T ss_pred             HHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhh
Confidence            9988777677665554 4699999999999999999999999999887543222222111                    


Q ss_pred             --cC------------CcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh
Q 037562          577 --EG------------CVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ  642 (670)
Q Consensus       577 --~~------------~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~  642 (670)
                        ..            .++.|.+-+...+..+.+.+..++.+++..-+....       ..+|...+     ++.+..-.
T Consensus       357 ~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~-------lapfl~~L-----lp~lk~~~  424 (569)
T KOG1242|consen  357 GATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD-------LAPFLPSL-----LPGLKENL  424 (569)
T ss_pred             cceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH-------HhhhHHHH-----hhHHHHHh
Confidence              00            123333334455556667777777777665432221       11222222     56666666


Q ss_pred             cCCCHHHHHHHHHHHHHh
Q 037562          643 SHDDNGISEKAVEILETY  660 (670)
Q Consensus       643 ~~~~~~v~~~a~~~l~~~  660 (670)
                      ....|++|..+.+++...
T Consensus       425 ~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  425 DDAVPEVRAVAARALGAL  442 (569)
T ss_pred             cCCChhHHHHHHHHHHHH
Confidence            666899999999888443

>PF05536 Neurochondrin: Neurochondrin

Probab=98.37  E-value=0.00062  Score=72.31  Aligned_cols=381  Identities=15%  Similarity=0.109  Sum_probs=228.0

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPP--IDEVIQSGVVPRFVEFLMRQD------YPQLQFKAAWALTNI  309 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~g~l~~L~~ll~~~~------~~~v~~~a~~~L~~l  309 (670)
                      ..+.+-+++|++.+.+-++.++-.+.++....+...  .+.+.+.=+.+.+-++|.+..      ....+.-|+.+|+.+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            447788888998887888999999999877642212  234667666788888887721      156788899999999


Q ss_pred             cCCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562          310 ASGTSENTKVVIDHGAVPIFVKLLASPSV-DVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT  388 (670)
Q Consensus       310 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~  388 (670)
                      +. +++....---.+-||.|++.+...+. .+...|..+|..++ ..+..++.+.+.|+++.|...+.+  .+.....|.
T Consensus        85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al  160 (543)
T PF05536_consen   85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL  160 (543)
T ss_pred             cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence            98 55554222222469999999988666 99999999999999 556678899999999999999955  456677888


Q ss_pred             HHHHhhhcCCCCC----ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH-HHHHHHc----CCHHHHHHhc
Q 037562          389 WTLFNFCRGKPQP----PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK-VQAVIEA----GVYPRLVELL  459 (670)
Q Consensus       389 ~~L~~l~~~~~~~----~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-~~~~~~~----~~i~~L~~lL  459 (670)
                      .++.+++......    .......+++.+...+.......+..++..|..+....+.. .......    .+...+..++
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            8888887654321    22222456666777776666677777888888877655311 1111111    3344455556


Q ss_pred             CCC-CccchhHHHHHHHHhhcCCchhhHHHH-hC-----CChHHHHHh---------------hccCCchhHH--HHHHH
Q 037562          460 GHS-SSSVLTPALRTIRNIVKGDDFQTQCII-NC-----GALPYFLDM---------------LVHNHEESIK--KEVSW  515 (670)
Q Consensus       460 ~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~-----~~~~~L~~~---------------l~~~~~~~v~--~~a~~  515 (670)
                      ++. .+.-|..|+...+.+.....  .+-++ +.     .++-.++++               .+.+......  -.+++
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf  318 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCF  318 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHH
Confidence            553 44566777777666654211  11111 11     112222211               1111011111  11111


Q ss_pred             -H----HHHhhc--------CCHHHHHHHHh--cCChHHHHHHhhc------CChhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037562          516 -I----ISNITC--------GNREQIQAVID--SGLIGPIVNLLQN------TEFDTKKEAAWAISNATKFGTHEQIKHL  574 (670)
Q Consensus       516 -~----L~~l~~--------~~~~~~~~l~~--~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~~~~~~~l  574 (670)
                       +    +..++.        -.++....+..  .+.+...+..|++      .++.....++.+|+.+....+...++.+
T Consensus       319 ~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v  398 (543)
T PF05536_consen  319 SILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV  398 (543)
T ss_pred             HHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH
Confidence             1    112222        12333333332  2345555666652      1233677789999888876444444444


Q ss_pred             HHcCCcHHHHhhccCCCh----------HHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHH
Q 037562          575 VREGCVKPLCDLLLCADP----------KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIEN  640 (670)
Q Consensus       575 ~~~~~i~~L~~ll~~~~~----------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~  640 (670)
                        .+.++.++++......          +.+...+=++..+...              ...++.+...||.+.+.+
T Consensus       399 --~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e--------------~~gr~~l~~~~g~~~l~~  458 (543)
T PF05536_consen  399 --YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE--------------EEGRKILLSNGGWKLLCD  458 (543)
T ss_pred             --HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc--------------HHHHHHHHhCCcHHHHHH
Confidence              3588888888854333          3444555555554432              224666777888777644

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.35  E-value=7.1e-07  Score=104.30  Aligned_cols=38  Identities=24%  Similarity=0.109  Sum_probs=22.7

Q ss_pred             CCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562          153 TFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD  190 (670)
Q Consensus       153 ~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~  190 (670)
                      .+++|+.|++.+|.-...+|.....+++|+.|++++..
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence            45666666666665444555555556677777665443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.31  E-value=9.9e-07  Score=103.08  Aligned_cols=40  Identities=18%  Similarity=0.085  Sum_probs=30.7

Q ss_pred             ccCCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562          151 AFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD  190 (670)
Q Consensus       151 ~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~  190 (670)
                      ...+|+|+.|++.+|.--..+|......++|+.|+++...
T Consensus       328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            3457889999999887655678777778899999886543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.25  E-value=0.00021  Score=77.23  Aligned_cols=382  Identities=12%  Similarity=0.074  Sum_probs=255.6

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 037562          244 VDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH  323 (670)
Q Consensus       244 ~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  323 (670)
                      -+.-++..+.++..++.-+.+++...    .......++++.+.++..++. ..||+.|...+.++........  =...
T Consensus       243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~  315 (759)
T KOG0211|consen  243 QSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVK  315 (759)
T ss_pred             HhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhh
Confidence            33345677888999999998887653    226667889999999998888 7999999999888876221111  1223


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC--CC
Q 037562          324 GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP--QP  401 (670)
Q Consensus       324 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~  401 (670)
                      .+.+.+++...+++..++.........+...-..   ......-+++...++ .+...+.+..++.-...++...+  ..
T Consensus       316 ~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~~  391 (759)
T KOG0211|consen  316 SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASCY  391 (759)
T ss_pred             hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcccc
Confidence            4678889999999999988877777666532111   111112356666666 55555666666555555554432  22


Q ss_pred             ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 037562          402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD  481 (670)
Q Consensus       402 ~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  481 (670)
                      .....+.++|.+..+..+.+..++.+.+.....+..-.+.  ...+ ....+.+...+++..+.|+.+..+.+..+-..+
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~  468 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN  468 (759)
T ss_pred             cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence            3333456688888888888999998888877777543220  0011 145677778888888899999988887776555


Q ss_pred             chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHH
Q 037562          482 DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN  561 (670)
Q Consensus       482 ~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  561 (670)
                      +...........++.+..+-... ...++.+..+.+-.++....   ..+.....-+.+...+.+....+++.|+..+..
T Consensus       469 ~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~  544 (759)
T KOG0211|consen  469 DVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPA  544 (759)
T ss_pred             Ccccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence            54444455566788888887777 78888888888888765321   222332334444455666678999999999988


Q ss_pred             hcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHh
Q 037562          562 ATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENL  641 (670)
Q Consensus       562 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L  641 (670)
                      ++.....+   . .....++.+.....+++.-.|...+.++..+........                .....++.+..+
T Consensus       545 l~~~~G~~---w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----------------~~~~Llp~~~~l  604 (759)
T KOG0211|consen  545 LVETFGSE---W-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----------------TCEDLLPVFLDL  604 (759)
T ss_pred             HHHHhCcc---h-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----------------HHHHHhHHHHHh
Confidence            87642211   1 112356677777666678888888888887766544322                233347888899


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCC
Q 037562          642 QSHDDNGISEKAVEILETYWSS  663 (670)
Q Consensus       642 ~~~~~~~v~~~a~~~l~~~~~~  663 (670)
                      ..+..++|+-.+.+.+..+-+.
T Consensus       605 ~~D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  605 VKDPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             ccCCchhhhhhHHHHHHHHHhh
Confidence            9999999999999998887554

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=6.9e-06  Score=81.57  Aligned_cols=263  Identities=13%  Similarity=0.166  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC
Q 037562          300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA  379 (670)
Q Consensus       300 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~  379 (670)
                      .+++.+|..++..-..-|..+.+..+.+.|+++|++|+.-+...+...++|..-.-...+..+++.|++..+++.+ .+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-MSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-hcc
Confidence            3455566667665566677788889999999999998888888899999999877777899999999999999999 566


Q ss_pred             ChhHHHHHHHHHHhhhcCCCCC-Chhh-hhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH---HHHHHHc---C-
Q 037562          380 NLSMLRTATWTLFNFCRGKPQP-PFNQ-VRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK---VQAVIEA---G-  450 (670)
Q Consensus       380 ~~~~~~~a~~~L~~l~~~~~~~-~~~~-~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~---~~~~~~~---~-  450 (670)
                      |..++.+..|.+..+..+.... .+.. ..-++..++.+..+++-.++..++..+.|+..+...+   ....++.   . 
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            7799999999999999887433 2222 3567888999999999999999999999998643221   1111111   1 


Q ss_pred             CHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh-CCChHHHHHhh----cc----------------------
Q 037562          451 VYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIIN-CGALPYFLDML----VH----------------------  503 (670)
Q Consensus       451 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~~~~L~~~l----~~----------------------  503 (670)
                      ++..++..+...++-.....+.+|.+++..++.....+.. ...+..+..+|    ..                      
T Consensus       566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~  645 (743)
T COG5369         566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN  645 (743)
T ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence            4566777777777766666788888877655543332221 11111111111    00                      


Q ss_pred             --------------------------CCchhHHHHHHHHHHHhhc---CC------HHHHHHHHhcCChHHHHHHhhcCC
Q 037562          504 --------------------------NHEESIKKEVSWIISNITC---GN------REQIQAVIDSGLIGPIVNLLQNTE  548 (670)
Q Consensus       504 --------------------------~~~~~v~~~a~~~L~~l~~---~~------~~~~~~l~~~~~i~~L~~ll~~~~  548 (670)
                                                .++.+.-.+..|.+.|+..   +.      .+.++.+.+.|+-+.+..+-.+++
T Consensus       646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S  725 (743)
T COG5369         646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS  725 (743)
T ss_pred             ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence                                      1134456667788888754   11      244556667666666666666777


Q ss_pred             hhHHHHHHHHHHHhc
Q 037562          549 FDTKKEAAWAISNAT  563 (670)
Q Consensus       549 ~~v~~~a~~aL~~l~  563 (670)
                      ..|++.+-.||.++-
T Consensus       726 l~vrek~~taL~~l~  740 (743)
T COG5369         726 LIVREKIGTALENLR  740 (743)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            899999999998863

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=0.00053  Score=71.45  Aligned_cols=359  Identities=15%  Similarity=0.149  Sum_probs=220.8

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 037562          241 PAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVV  320 (670)
Q Consensus       241 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  320 (670)
                      ..+-+-|+++++-++-..++.|+++ ..      .++++ ..+|.+...|.+.. +.||.+|..++..+-..   .-..+
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckL-kE------~ELle-pl~p~IracleHrh-sYVRrNAilaifsIyk~---~~~L~  169 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKL-KE------PELLE-PLMPSIRACLEHRH-SYVRRNAILAIFSIYKN---FEHLI  169 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhc-Cc------HHHhh-hhHHHHHHHHhCcc-hhhhhhhheeehhHHhh---hhhhc
Confidence            4456667889999999999999877 21      22222 37888889999999 89999999999888652   11111


Q ss_pred             HhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc--ccCChhHHHHHHHHHHhhhcC
Q 037562          321 IDHGAVPIFVKLL-ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN--ENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       321 ~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~--~~~~~~~~~~a~~~L~~l~~~  397 (670)
                        .++-+.+-.+| ...++..+++|...|...-   ++.        ++..+.....  .+-+..++......+...|..
T Consensus       170 --pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D---~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~  236 (948)
T KOG1058|consen  170 --PDAPELIESFLLTEQDPSCKRNAFLMLFTTD---PER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA  236 (948)
T ss_pred             --CChHHHHHHHHHhccCchhHHHHHHHHHhcC---HHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc
Confidence              12333334444 4578888888887776542   221        2233333332  223445555666666666654


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHH
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRN  476 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~  476 (670)
                      .|..    ....+..+..+|.+.++.++..|+.++.+++..+. ....     ....++.++.. ++..++.-.+.-|..
T Consensus       237 ~p~~----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~  306 (948)
T KOG1058|consen  237 NPAE----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALKA-----AASTYIDLLVKESDNNVKLIVLDRLSE  306 (948)
T ss_pred             CHHH----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHHH-----HHHHHHHHHHhccCcchhhhhHHHHHH
Confidence            3322    24567788889999999999999999999885533 2221     22344444433 344455444555555


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEA  555 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  555 (670)
                      +...+....     .|.+--++.+|.++ +-++|+.+....-.++. .+-+.+-.+.+..+...--. =...+...|..-
T Consensus       307 l~~~~~~il-----~~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlL  379 (948)
T KOG1058|consen  307 LKALHEKIL-----QGLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLL  379 (948)
T ss_pred             HhhhhHHHH-----HHHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHH
Confidence            543222211     24555577788888 99999999988888866 33333333332111111000 001234568888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchH
Q 037562          556 AWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGL  635 (670)
Q Consensus       556 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  635 (670)
                      ..++..++.. -|+....     +++.|++.+.+.++.....++..+...++..++.             +..+     +
T Consensus       380 iktih~cav~-Fp~~aat-----vV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L-------------r~~i-----i  435 (948)
T KOG1058|consen  380 IKTIHACAVK-FPEVAAT-----VVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL-------------RASI-----I  435 (948)
T ss_pred             HHHHHHHhhc-ChHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH-------------HHHH-----H
Confidence            8888888876 4554444     7899999999999887777777777776554432             2222     2


Q ss_pred             HH-HHHhhcCCCHHHHHHHHHHHHHhcCCcc
Q 037562          636 EK-IENLQSHDDNGISEKAVEILETYWSSRV  665 (670)
Q Consensus       636 ~~-l~~L~~~~~~~v~~~a~~~l~~~~~~~~  665 (670)
                      +. ++.+-.-.+..+..-|.|++.+|...+.
T Consensus       436 ~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  436 EKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            33 3444455677888899999999986654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=7e-05  Score=76.59  Aligned_cols=254  Identities=13%  Similarity=0.087  Sum_probs=170.7

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC------C
Q 037562          326 VPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK------P  399 (670)
Q Consensus       326 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~------~  399 (670)
                      ...++.+..+.+..|+.+|+.+|..+..+.. ..+.     ......+++ .+.+..++..|...++-.....      .
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            3447788888999999999999988875332 2222     244556677 7777889887765554444332      1


Q ss_pred             CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh--
Q 037562          400 QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI--  477 (670)
Q Consensus       400 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l--  477 (670)
                      .........++..+-..+.+-+-.||..|..+|+.+..-+++..+..++..++..+-..-.     -.+..-...++-  
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~-----ahkrpk~l~s~Gew  347 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT-----AHKRPKALYSSGEW  347 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh-----cccchHHHHhcCCc
Confidence            2233344677888888898888999999999999988777777666666444442211100     000000111111  


Q ss_pred             hc-----------CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037562          478 VK-----------GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN  546 (670)
Q Consensus       478 ~~-----------~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~  546 (670)
                      +.           ..+.....++..|+-..++.-+.++ -.+||+.|+..++.++...|....     ..+..|++++.+
T Consensus       348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfND  421 (823)
T KOG2259|consen  348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFND  421 (823)
T ss_pred             ccCccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhcc
Confidence            10           1223344577889999999999988 889999999999999987666432     356789999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHH
Q 037562          547 TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLEN  604 (670)
Q Consensus       547 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~  604 (670)
                      +...||..|..+|..++.+..       ++...++.+.+.+.+.++++|......|.+
T Consensus       422 E~~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  422 EIEVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999999999999987521       233356677777777788877766555543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.14  E-value=0.00029  Score=70.84  Aligned_cols=318  Identities=13%  Similarity=0.099  Sum_probs=195.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      ..+.+..++-+++ .+++..+.+++..+.. +++..+.+.+.++--.++.-|..  .+..-|++|+..+..+.......+
T Consensus        26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~  103 (371)
T PF14664_consen   26 FGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK  103 (371)
T ss_pred             HHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence            3444554555666 7999999999999988 77888888887766666666654  456678899999888874422111


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                        -+..|++..++... .+.+...+..+..+|..++-.+  +......|++..+...+.++..++...++.++..+.+.+
T Consensus       104 --~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  104 --EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             --cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence              12445678888888 6677789999999999999874  344555889999999988776678888999999988765


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCCC-------Cc--cchhHHHHHHHHhhcCCchhhHHHHhC-CChHHHHHhhccCCchhH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGHS-------SS--SVLTPALRTIRNIVKGDDFQTQCIINC-GALPYFLDMLVHNHEESI  509 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~~~~L~~~l~~~~~~~v  509 (670)
                      ..+ +.+...--++.++.-..+.       +.  +....+..++..+-..-+.......+. .++..|+..|..+ .+++
T Consensus       179 ~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~i  256 (371)
T PF14664_consen  179 RTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEI  256 (371)
T ss_pred             chh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHH
Confidence            533 2222212233333333222       11  233445566666655444332222222 5788899999998 8889


Q ss_pred             HHHHHHHHHHhhc-CCHHHHHHH------HhcCChHHHHHHh---hcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 037562          510 KKEVSWIISNITC-GNREQIQAV------IDSGLIGPIVNLL---QNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC  579 (670)
Q Consensus       510 ~~~a~~~L~~l~~-~~~~~~~~l------~~~~~i~~L~~ll---~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~  579 (670)
                      |+.....+..+.. ..+......      ...+-+..--++-   ..+.......+ .-=.++..+.-.--...|++.|.
T Consensus       257 r~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL  335 (371)
T PF14664_consen  257 RKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLLAILIEAGL  335 (371)
T ss_pred             HHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHHHHHHHcCh
Confidence            9999988888866 222111111      1111110000000   00000000000 00001111101112345678999


Q ss_pred             cHHHHhhccCC-ChHHHHHHHHHHHHHHHhh
Q 037562          580 VKPLCDLLLCA-DPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       580 i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++.|+++..+. ++.+..+|.-.|+.++...
T Consensus       336 ~~~L~~li~~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  336 LEALVELIESSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            99999999876 8889999999999888654

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.14  E-value=5e-05  Score=61.35  Aligned_cols=130  Identities=20%  Similarity=0.170  Sum_probs=109.4

Q ss_pred             ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      +-+..|+...+ ..+.+.+.+....|.|.+.+  +.+...+.+.+++..++..+..++ ..+.+.++..|+|++. ++.+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d~~n   91 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-DKTN   91 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-ChHH
Confidence            33566666655 56778888888899999876  677888999999999999999999 8999999999999998 8999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL  375 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l  375 (670)
                      .+.|.++++++.++..+.++.......|+.++..++...-..++.+..    +++++.+
T Consensus        92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v  146 (173)
T KOG4646|consen   92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV  146 (173)
T ss_pred             HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence            999999999999999999999999999999999999766666666643    4555554

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.14  E-value=0.00018  Score=67.13  Aligned_cols=239  Identities=17%  Similarity=0.134  Sum_probs=149.5

Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHH
Q 037562          411 PVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQTQCI  488 (670)
Q Consensus       411 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l  488 (670)
                      ..|-++++.-++-.+.-|+.++.++....+.+.....+...-..++..+++  +..+++...+.+++.++... ..++.+
T Consensus       152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi  230 (432)
T COG5231         152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDI  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHH
Confidence            334455555566678889999999987655444444555566678888877  45678999999999998743 323211


Q ss_pred             H-hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcC-ChHHHHHHhh--cCChhHHHHHHHHHHHhc
Q 037562          489 I-NCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSG-LIGPIVNLLQ--NTEFDTKKEAAWAISNAT  563 (670)
Q Consensus       489 ~-~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~-~i~~L~~ll~--~~~~~v~~~a~~aL~~l~  563 (670)
                      - -...+.-++++.+......|-+-++.++.|++.. ....+..+.-.| +.+..--+.+  -.|++++...-..=..+.
T Consensus       231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1 1245666777776654667888899999999873 334444444334 4444443433  234554443322222221


Q ss_pred             CCC--------------------C---------HHHHHHHHHc--CCcHHHHhhccCCChH-HHHHHHHHHHHHHHhhhh
Q 037562          564 KFG--------------------T---------HEQIKHLVRE--GCVKPLCDLLLCADPK-IVTVCLEGLENILKVGVA  611 (670)
Q Consensus       564 ~~~--------------------~---------~~~~~~l~~~--~~i~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~  611 (670)
                      ...                    +         ..+...+.+.  .++..|..+++..++. ....|+.-+..+++..++
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE  390 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE  390 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence            110                    0         1123333332  2466777777766665 344555666666655443


Q ss_pred             hhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562          612 EMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSS  663 (670)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~  663 (670)
                                   ....+...|+-+.|-+|.+|++++|+..|.++++.+.++
T Consensus       391 -------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         391 -------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             -------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence                         466788999999999999999999999999999887654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.0063  Score=63.30  Aligned_cols=347  Identities=16%  Similarity=0.154  Sum_probs=204.2

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      ..+.+=|.+.+ +.....|+.+++|+..  .+.+..+..  -|+   ++|.+  ..+-++..|+-+|..+....|..   
T Consensus       114 n~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---  182 (938)
T KOG1077|consen  114 NSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---  182 (938)
T ss_pred             HHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---
Confidence            33444455666 6888889999999965  455555432  233   55555  44678888888998888776653   


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc-------------cCChhHHHHH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR-------------SNDEEVLTDA  428 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-------------~~~~~v~~~a  428 (670)
                      +--.+....++.+| ++.+..+...+...+..++...+..-......++..|.....             -+.|-++..+
T Consensus       183 ~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl  261 (938)
T KOG1077|consen  183 VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL  261 (938)
T ss_pred             cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence            22223477888888 666677777788888888877654433333444444433332             1346778888


Q ss_pred             HHHHHHhccCChHHHH-HHHHcCCHHHHHHhcCCC--Cccc-----hhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh
Q 037562          429 CWALSYLSDGTNDKVQ-AVIEAGVYPRLVELLGHS--SSSV-----LTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM  500 (670)
Q Consensus       429 l~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~--~~~v-----~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~  500 (670)
                      +++|.+.-...+.-.. .+.  .+++.++...+..  ..++     +...+.-.-+++.+-+..-..+.  ..+..|-++
T Consensus       262 ~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f  337 (938)
T KOG1077|consen  262 LRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF  337 (938)
T ss_pred             HHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence            8888887533332222 122  2444455444421  1112     22222223334433332222222  357788899


Q ss_pred             hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 037562          501 LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC  579 (670)
Q Consensus       501 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~  579 (670)
                      +.+. ...+|.-|...++.++.... ....+..+  .+.++..|+ ..|..+|+.|+..|..++..   ++.+.     +
T Consensus       338 ls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~---~Nak~-----I  405 (938)
T KOG1077|consen  338 LSHR-ETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV---SNAKQ-----I  405 (938)
T ss_pred             hhcc-cccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch---hhHHH-----H
Confidence            9888 88999999999999877422 22222222  677788888 77899999999999999976   34444     5


Q ss_pred             cHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhch------HHHHHHhhcCCCHHHHHHH
Q 037562          580 VKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEG------LEKIENLQSHDDNGISEKA  653 (670)
Q Consensus       580 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~~l~~L~~~~~~~v~~~a  653 (670)
                      +.-|.+++.+.++.+++...--+..+.+....+..     =......+.++-+|-      +-++.++ -..+++++.+|
T Consensus       406 V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~-----WyVdviLqLiriagd~vsdeVW~RvvQi-VvNnedlq~ya  479 (938)
T KOG1077|consen  406 VAELLQYLETADYSIREEIVLKVAILAEKYATDYS-----WYVDVILQLIRIAGDYVSDEVWYRVVQI-VVNNEDLQGYA  479 (938)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcc-----hhHHHHHHHHHHhcccccHHHHHHhhee-EecchhhhHHH
Confidence            67788888888887776543333323222111110     011223344444432      2222222 34567888888


Q ss_pred             HHHHHHhcCCc
Q 037562          654 VEILETYWSSR  664 (670)
Q Consensus       654 ~~~l~~~~~~~  664 (670)
                      .+-+-.|.+..
T Consensus       480 ak~~fe~Lq~~  490 (938)
T KOG1077|consen  480 AKRLFEYLQKP  490 (938)
T ss_pred             HHHHHHHHhhh
Confidence            87777776544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.08  E-value=0.0033  Score=65.29  Aligned_cols=348  Identities=14%  Similarity=0.116  Sum_probs=199.5

Q ss_pred             HHHHHHHhcCCCh---HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          240 LPAMVDGVWSDDN---SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       240 i~~l~~~l~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      +|.+++.|.+++.   ......+.+|..++..  .+..+.+.. .++..+-...+.....+....++.++..+.......
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            3677788875544   5667788888888654  332333222 445555555544333677777888888876533222


Q ss_pred             -----HHHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCCchh-HHHHHhcCChHHHHHHhc-------
Q 037562          317 -----TKVVIDHGAVPIFVKLLAS-----P--SVDVRKQTVWALGNVAGDSPRC-RDLVLSQGALIPLLAELN-------  376 (670)
Q Consensus       317 -----~~~i~~~~~i~~L~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~Ll~~l~-------  376 (670)
                           .....+..+++.+.++.-.     .  ++.+...+...+..+...-+.. ++.+     +..+..+..       
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~  152 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSP  152 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCC
Confidence                 2233344467777775532     1  2455566666666665443332 2222     333333332       


Q ss_pred             ---ccC-ChhHHHHHHHHH-HhhhcCCCCCChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCC--hHHHHHHHH
Q 037562          377 ---ENA-NLSMLRTATWTL-FNFCRGKPQPPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGT--NDKVQAVIE  448 (670)
Q Consensus       377 ---~~~-~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~--~~~~~~~~~  448 (670)
                         ... ...........+ +-++.-++..........+..++.+..+ .++..+..++.+++.++..-  ++...    
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~----  228 (415)
T PF12460_consen  153 FQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD----  228 (415)
T ss_pred             CCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH----
Confidence               000 001111121122 2233322333222334577777776554 46888889999998888652  22222    


Q ss_pred             cCCHHHHHHhc-CCCCccchhHHHHHHHHhhc-----CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          449 AGVYPRLVELL-GHSSSSVLTPALRTIRNIVK-----GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       449 ~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                       +++..+...+ ...+...+..++.++.-++.     +++...      ..+..|++++.+   +++...|+.++.-+..
T Consensus       229 -~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~---~~~g~~aA~~f~il~~  298 (415)
T PF12460_consen  229 -EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS---PELGQQAAKAFGILLS  298 (415)
T ss_pred             -HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence             2333444444 33445556666655544432     222221      246667787765   4778888888888876


Q ss_pred             CCHH--------HHHHHHhcC----ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC
Q 037562          523 GNRE--------QIQAVIDSG----LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA  590 (670)
Q Consensus       523 ~~~~--------~~~~l~~~~----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  590 (670)
                      ..++        .++.+.+..    ++|.|++-.+..+.+.+.....||.++..+-....... --...+|.|++.++.+
T Consensus       299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~  377 (415)
T PF12460_consen  299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP  377 (415)
T ss_pred             CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence            4222        233444433    47777777777777799999999999998744332222 1234889999999999


Q ss_pred             ChHHHHHHHHHHHHHHHhhh
Q 037562          591 DPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       591 ~~~v~~~a~~~l~~l~~~~~  610 (670)
                      |++++..++.++..++...+
T Consensus       378 ~~~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  378 DADVLLSSLETLKMILEEAP  397 (415)
T ss_pred             CHHHHHHHHHHHHHHHHcCH
Confidence            99999999999999887653

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.07  E-value=0.00052  Score=64.19  Aligned_cols=230  Identities=15%  Similarity=0.169  Sum_probs=156.5

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh-
Q 037562          289 FLMRQDYPQLQFKAAWALTNIASGTSENTKVVID-HGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLS-  364 (670)
Q Consensus       289 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-  364 (670)
                      +++.-+ +-.+..|++++.++.. .++.|..+-. ...-..++..+++  ....++.+.+.+++.++.. +.+.+.+-. 
T Consensus       157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~  233 (432)
T COG5231         157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKM  233 (432)
T ss_pred             HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence            333334 5678899999999988 7777776553 3344677777776  5678999999999998854 344432222 


Q ss_pred             cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh--hhhhhHHHHHHhhcc---CChhHHHHHHHHHHHhccCC
Q 037562          365 QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN--QVRPALPVLAQLIRS---NDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       365 ~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~L~~lL~~---~~~~v~~~al~~L~~l~~~~  439 (670)
                      ...+.-++++......+.+.+-++.++.|++...|.....  ...+-+...++.|..   .|++++...-..=..+..+.
T Consensus       234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~  313 (432)
T COG5231         234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT  313 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence            1346677777777777889999999999999865433222  123333444455442   35555544333322222211


Q ss_pred             h------------------------------HHHHHHHHc--CCHHHHHHhcCCCCcc-chhHHHHHHHHhhcCCchhhH
Q 037562          440 N------------------------------DKVQAVIEA--GVYPRLVELLGHSSSS-VLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       440 ~------------------------------~~~~~~~~~--~~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~  486 (670)
                      .                              .+...+.+.  .++..+..++++.++. ...-||.-|+.+....|+...
T Consensus       314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~  393 (432)
T COG5231         314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA  393 (432)
T ss_pred             hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence            1                              111112221  3678888899987776 566788999999998999899


Q ss_pred             HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      .+.+.|+-+.++.+++++ +++|+-+|..++..+..
T Consensus       394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            888999999999999999 99999999999887643

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=0.0093  Score=65.31  Aligned_cols=342  Identities=14%  Similarity=0.127  Sum_probs=194.5

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..+..++..+++.|..++-.|++.+..++.....+-.++     ++...++++.-.+.+..-..|+-+|+.+|...----
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            346777888888999999999999999988742222222     455566655544335666789999999997331111


Q ss_pred             HHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhcccCChhHHHHH
Q 037562          318 KVVIDHGAVPIFVKLLAS--------PSVDVRKQTVWALGNVAGDSPRC--RDLVLSQGALIPLLAELNENANLSMLRTA  387 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a  387 (670)
                      ..+.  .++|.++.-+.-        ....||..|+.+.+.++......  +. +.+ .....|+..-.-+.+...|+.|
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDrevncRRAA  491 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDREVNCRRAA  491 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCchhhHhHHH
Confidence            1111  245555554432        34679999999999988543221  11 111 1122222222256677899999


Q ss_pred             HHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCC---hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc
Q 037562          388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSND---EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS  464 (670)
Q Consensus       388 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~  464 (670)
                      ..++.......++.     ..+++    ++...|   -..+.++-..+..-....+...+.+++    ..+..-+.+-+.
T Consensus       492 sAAlqE~VGR~~n~-----p~Gi~----Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~----~L~t~Kv~HWd~  558 (1133)
T KOG1943|consen  492 SAALQENVGRQGNF-----PHGIS----LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN----HLLTKKVCHWDV  558 (1133)
T ss_pred             HHHHHHHhccCCCC-----CCchh----hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH----HHHhcccccccH
Confidence            99988877664322     11222    122222   223333333333322233333443333    222333666788


Q ss_pred             cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH---HHHHHHh---cC---
Q 037562          465 SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE---QIQAVID---SG---  535 (670)
Q Consensus       465 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~---~~---  535 (670)
                      .+|+.++++|.+++...++    ......++.+++...+. +...+..+..+.+.++.+...   ....+.+   ++   
T Consensus       559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~  633 (1133)
T KOG1943|consen  559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLS  633 (1133)
T ss_pred             HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhh
Confidence            8999999999999875543    33456788888888888 888888777777776542111   1111111   12   


Q ss_pred             ChHHHHHH-hhcC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 037562          536 LIGPIVNL-LQNT-EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       536 ~i~~L~~l-l~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  608 (670)
                      +++.+.+. +..+ ..-.+...+.++..+... .......+.-.+.-..+.+.+..++ .++..+.+++..++.-
T Consensus       634 ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~  706 (1133)
T KOG1943|consen  634 IIPPICDRYFYRGQGTLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST  706 (1133)
T ss_pred             hccHHHHHHhccchHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence            23333322 2222 245566677777777765 3332233333334444555555555 7888888888887653

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.07  E-value=0.00035  Score=70.40  Aligned_cols=281  Identities=11%  Similarity=0.080  Sum_probs=168.8

Q ss_pred             cCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 037562          248 WSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVP  327 (670)
Q Consensus       248 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  327 (670)
                      .+....++.++++.++.++..+   ...+.++. .+..|-.+|+++. ...|..|.++|..++...|+...     -+=+
T Consensus       274 s~k~emV~lE~Ar~v~~~~~~n---v~~~~~~~-~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-----vcN~  343 (898)
T COG5240         274 SDKFEMVFLEAARAVCALSEEN---VGSQFVDQ-TVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-----VCNK  343 (898)
T ss_pred             cCcchhhhHHHHHHHHHHHHhc---cCHHHHHH-HHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-----ecCh
Confidence            3455788999999998886553   11122222 4666777888888 79999999999999985554321     1224


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhh
Q 037562          328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR  407 (670)
Q Consensus       328 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  407 (670)
                      .+-.++.+.+..+...|+..|..-  +..+.-+.+     +..+...+ .+-+...+.-+..++..||...|.....   
T Consensus       344 evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~s---  412 (898)
T COG5240         344 EVESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKLS---  412 (898)
T ss_pred             hHHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHHH---
Confidence            555677777777777766666553  223322332     22223333 2233344455555666666555443332   


Q ss_pred             hhHHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562          408 PALPVLAQLI-RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       408 ~~i~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  486 (670)
                       .+..|...| +.+..+...++..++..+..+.++..+     .++..|..++.+.  +.-.-++++|+-+....|....
T Consensus       413 -~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~  484 (898)
T COG5240         413 -YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC--EYHQITVRILGILGREGPRAKT  484 (898)
T ss_pred             -HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCC
Confidence             233333333 345677888888888887766654433     3345566666543  2344455666666554332211


Q ss_pred             HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                         -...+..+..-+--. +.-+|..|..+|..++..-.+   ......+...|-+++.+.|.+||..|..++.++-.
T Consensus       485 ---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         485 ---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             ---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence               012344555555445 678999999999998763222   11233455678889999999999999999999864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.06  E-value=0.00013  Score=79.79  Aligned_cols=294  Identities=17%  Similarity=0.128  Sum_probs=185.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC---CCchhH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG---DSPRCR  359 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~~  359 (670)
                      ++.+...+..-...+.+..|+..|..++.-..   +...-..++|.++.++.++..+||..|+.+|..+..   +-+..-
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d  500 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD  500 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence            55555555554436788999999999887221   111223578999999999999999999999888762   222222


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHH-----HHHHhhccCChhHHHHHHHHHHH
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALP-----VLAQLIRSNDEEVLTDACWALSY  434 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~-----~L~~lL~~~~~~v~~~al~~L~~  434 (670)
                      ..++..-.+|.|-.++.++....++..-+.+|+.|+...        .+.+.     ....++.+.+.+       ... 
T Consensus       501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--------~rFle~~q~~~~~g~~n~~nse-------t~~-  564 (1431)
T KOG1240|consen  501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--------YRFLELTQELRQAGMLNDPNSE-------TAP-  564 (1431)
T ss_pred             chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--------HHHHHHHHHHHhcccccCcccc-------ccc-
Confidence            233333356666666644455566666677777776531        11111     111123333322       000 


Q ss_pred             hccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHH
Q 037562          435 LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS  514 (670)
Q Consensus       435 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~  514 (670)
                       -...+...+.+.+ ++-+....++.++++-|+..-+..|.-||......   =-+.-+++.|+.+|++. |..+|..-.
T Consensus       565 -~~~~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aFf  638 (1431)
T KOG1240|consen  565 -EQNYNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAFF  638 (1431)
T ss_pred             -ccccchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHHH
Confidence             0111222233333 44466777788777778888888888887522111   11234688999999999 999987766


Q ss_pred             HHHHHhhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh
Q 037562          515 WIISNITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP  592 (670)
Q Consensus       515 ~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  592 (670)
                      ..+.-++.  +...     ++..++|.|.+-+.++.+-|...|++++..|+..+   ..++..-.+.++...-+|-+++.
T Consensus       639 dsI~gvsi~VG~rs-----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~---ll~K~~v~~i~~~v~PlL~hPN~  710 (1431)
T KOG1240|consen  639 DSIVGVSIFVGWRS-----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG---LLRKPAVKDILQDVLPLLCHPNL  710 (1431)
T ss_pred             hhccceEEEEeeee-----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc---ccchHHHHHHHHhhhhheeCchH
Confidence            66665543  2111     34457888889999999999999999999998864   22222223356666677889999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 037562          593 KIVTVCLEGLENILKVG  609 (670)
Q Consensus       593 ~v~~~a~~~l~~l~~~~  609 (670)
                      -||..++..+..+.+.-
T Consensus       711 WIR~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  711 WIRRAVLGIIAAIARQL  727 (1431)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999988776543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.04  E-value=9.4e-06  Score=52.72  Aligned_cols=40  Identities=40%  Similarity=0.864  Sum_probs=38.0

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 037562          313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA  352 (670)
Q Consensus       313 ~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  352 (670)
                      ++++++.+++.|+++.|+++|+++++++++.|+|+|+|++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0058  Score=69.10  Aligned_cols=288  Identities=16%  Similarity=0.176  Sum_probs=168.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--H
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC--R  359 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~  359 (670)
                      .+|.|.++=-+++ ..||.....+...+..+.....+...+ .+++-|+.-+.+....+|+.++-+|..+..+.+.-  .
T Consensus       999 LIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen  999 LIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred             hhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence            5777777766777 899998888888888855555555554 57788888888899999999999999999776532  2


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHH---HHHHHHHhhhcCC-----CCCChhhhhhhHHHHHH-hhccCChhHHHHHHH
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLR---TATWTLFNFCRGK-----PQPPFNQVRPALPVLAQ-LIRSNDEEVLTDACW  430 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~---~a~~~L~~l~~~~-----~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~al~  430 (670)
                      +.+.+  ....+++.+ ++-.+.+|.   .++.+++.++-..     +.........++|.+.. -+-+.-+++|..++.
T Consensus      1077 e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1077 EKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIG 1153 (1702)
T ss_pred             HHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence            22221  234444444 444556666   4455566665332     12223333445555441 122566899999999


Q ss_pred             HHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccch-hHHHHH----------HHH-hhcCCchh--hHHHH-------
Q 037562          431 ALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVL-TPALRT----------IRN-IVKGDDFQ--TQCII-------  489 (670)
Q Consensus       431 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~-~~a~~~----------L~~-l~~~~~~~--~~~l~-------  489 (670)
                      ++..++...+........ ..++.++.....-++.+. .-++++          +.. .+.+.+-.  +...+       
T Consensus      1154 tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1154 TLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred             HHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence            999999877664443322 566666666665444332 122222          111 11111100  01011       


Q ss_pred             hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH
Q 037562          490 NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE  569 (670)
Q Consensus       490 ~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  569 (670)
                      -...+|.+.+++..+..-..|..++..+.-++.......... ....+..++..+++.++.+++.-+.|.+.++...+++
T Consensus      1233 Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred             HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH
Confidence            112455555555544333444445555554433111000000 1124556666667888999999999999999988887


Q ss_pred             HHHHHHH
Q 037562          570 QIKHLVR  576 (670)
Q Consensus       570 ~~~~l~~  576 (670)
                      +.+.+++
T Consensus      1312 q~qKLie 1318 (1702)
T KOG0915|consen 1312 QMQKLIE 1318 (1702)
T ss_pred             HHHHHHH
Confidence            8777554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.94  E-value=1.3e-05  Score=79.87  Aligned_cols=130  Identities=15%  Similarity=0.226  Sum_probs=84.1

Q ss_pred             cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562           45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE  124 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  124 (670)
                      .++++..|++++| .|+++|.   ..++|++|.|.+|.+|+.+.  ..+  .++|++|.|.+|.++..++          
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sLP----------  111 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGLP----------  111 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCC--chh--hhhhhheEccCcccccccc----------
Confidence            4688999999999 7888872   22479999999999998762  222  3689999999998876553          


Q ss_pred             cccccccccccccc--cccccccccCCcccCCCCccEEeEecCCCcc--ccccCCcCCCCccceeeeeccCCccceeecc
Q 037562          125 VITFRELKELNLLQ--MQNLISFCSGNCAFTFPSLEILVVNYCPNMK--IFSGGELSTPNLHKVQLSRWDGEEHWIWVHD  200 (670)
Q Consensus       125 ~~~~~~L~~L~l~~--~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~i~~~~~~~~~~~~~~  200 (670)
                          +.|+.|.+.+  |..+..++        ++|+.|.+.++....  .+|.  .-+++|+.|.++++....   .-.+
T Consensus       112 ----~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~---LP~~  174 (426)
T PRK15386        112 ----ESVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII---LPEK  174 (426)
T ss_pred             ----cccceEEeCCCCCcccccCc--------chHhheecccccccccccccc--ccCCcccEEEecCCCccc---Cccc
Confidence                3466666642  34444433        358888886533221  2221  224799999997655331   1134


Q ss_pred             chhhhHHHH
Q 037562          201 LNTTIKYLY  209 (670)
Q Consensus       201 ~~~~i~~l~  209 (670)
                      ++.+++.+.
T Consensus       175 LP~SLk~L~  183 (426)
T PRK15386        175 LPESLQSIT  183 (426)
T ss_pred             ccccCcEEE
Confidence            555554444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.0042  Score=62.99  Aligned_cols=347  Identities=12%  Similarity=0.102  Sum_probs=185.8

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562          250 DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD---YPQLQFKAAWALTNIASGTSENTKVVIDHGAV  326 (670)
Q Consensus       250 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  326 (670)
                      .++-.|.+|+..|.++-..+      .+    +...+++.+....   +.......+++...+...+++.+..+     .
T Consensus       202 ~~~isqYHalGlLyq~kr~d------km----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r  266 (898)
T COG5240         202 GNPISQYHALGLLYQSKRTD------KM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R  266 (898)
T ss_pred             CChHHHHHHHHHHHHHhccc------HH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence            34556777777777663321      11    1233444443322   11222223344444444444443332     3


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562          327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV  406 (670)
Q Consensus       327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  406 (670)
                      |.|-.-+++.-+-+.-.+++++..++..+-.  ...++. .+..|-.+| ..+....+-.|..+|..++...|....   
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~~-~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv~---  339 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVDQ-TVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKVS---  339 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHHH-HHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCceee---
Confidence            4555556666677777788888887744311  111111 244444444 666667778999999999987654422   


Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562          407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  486 (670)
                       -+-+.+-.++.+.+..+..+|+..|..-.  .++.+.     .++..+..++.+-+...+.-++.++..++-..+....
T Consensus       340 -vcN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~id-----rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~  411 (898)
T COG5240         340 -VCNKEVESLISDENRTISTYAITTLLKTG--TEETID-----RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL  411 (898)
T ss_pred             -ecChhHHHHhhcccccchHHHHHHHHHcC--chhhHH-----HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence             23344566777778888888877775543  333333     2344555555554555555555555555554443333


Q ss_pred             HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562          487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG  566 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  566 (670)
                           ..+..|...|......+.+..+..++..+....|+....     ++..|...++  |.+.-+.++..|+-+...|
T Consensus       412 -----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIE--Dcey~~I~vrIL~iLG~Eg  479 (898)
T COG5240         412 -----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIE--DCEYHQITVRILGILGREG  479 (898)
T ss_pred             -----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHh--hcchhHHHHHHHHHhcccC
Confidence                 234555555544437778888888888877766554332     3445666655  3344444555555555443


Q ss_pred             CH--HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcC
Q 037562          567 TH--EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH  644 (670)
Q Consensus       567 ~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~  644 (670)
                      ..  .-.+      .+..+..-+--++.-+|.+|..||..+.-..+. .               +........+....++
T Consensus       480 P~a~~P~~------yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d-~---------------~~~~sv~~~lkRclnD  537 (898)
T COG5240         480 PRAKTPGK------YVRHIYNRLILENNIVRSAAVQALSKFALNISD-V---------------VSPQSVENALKRCLND  537 (898)
T ss_pred             CCCCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc-c---------------ccHHHHHHHHHHHhhc
Confidence            11  0001      122223322334666777777777664322111 1               1111224556677788


Q ss_pred             CCHHHHHHHHHHHHHh
Q 037562          645 DDNGISEKAVEILETY  660 (670)
Q Consensus       645 ~~~~v~~~a~~~l~~~  660 (670)
                      .+++|+++|.-.++.+
T Consensus       538 ~DdeVRdrAsf~l~~~  553 (898)
T COG5240         538 QDDEVRDRASFLLRNM  553 (898)
T ss_pred             ccHHHHHHHHHHHHhh
Confidence            8888888887777655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=1.4e-06  Score=80.39  Aligned_cols=140  Identities=18%  Similarity=0.127  Sum_probs=88.4

Q ss_pred             CCccccEEEeccCcCcccccc-cccccCCCCcEEEEecCCCCccccCC-C-ccccccceeeeccccccccc-ccchhhhc
Q 037562           20 NGMEVKISEAYNCYRLENILI-EESSVMNNLVILCVHCCDHLINLVPS-S-TSFQNLTNLVVSHCKRLKIV-LTSSIAKT   95 (670)
Q Consensus        20 ~~~~L~~L~i~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~~~~~-~-~~~~~L~~L~i~~c~~l~~l-~~~~~~~~   95 (670)
                      +..+|+.|+|+.|+++++-.. .....+..|..|++++|.-....... + +-=++|+.|+|+||.+--.. ........
T Consensus       232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            344888888888888876432 12356788888888888744332110 0 11257888999988642211 01123457


Q ss_pred             ccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCC
Q 037562           96 LVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPN  167 (670)
Q Consensus        96 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~  167 (670)
                      +|+|.+|++++|..++.-+.       .....|+.|++|+++.|..+----. .+....|+|.+|++.+|-.
T Consensus       312 cp~l~~LDLSD~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCF-------QEFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             CCceeeeccccccccCchHH-------HHHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEeccccC
Confidence            88999999999887764211       1234688899999988876521000 1245678899999888754

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.0077  Score=64.91  Aligned_cols=219  Identities=19%  Similarity=0.149  Sum_probs=136.9

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..+|.+++.+.+.|.+++.-.-..+...+...  +  +.++-  .++.+.+=+++++ +.+|-.|++.++.+-.  ++..
T Consensus        55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~--P--~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~  125 (757)
T COG5096          55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLK--P--ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELL  125 (757)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H--HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHH
Confidence            34677777777778888888888888887663  2  11111  3677788888899 9999999999998854  2222


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      .     .+++++.+++.++++.||..|+-++.++-.-++   +.+.+.|.+..+..++ .+.++.+.++|..+|..+...
T Consensus       126 ~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         126 G-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             H-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence            2     357899999999999999999999999985554   3455666666666666 889999999999999988876


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSND-EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      ....-.......++.+.-...... +.++...+..+..-....+....     ++...+...+++.++.+...|+..+..
T Consensus       197 ~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~-----~~~~~~~~~~~~~n~~vl~~av~~i~~  271 (757)
T COG5096         197 LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAE-----DFEERLSPPLQHNNAEVLLIAVKVILR  271 (757)
T ss_pred             hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHH-----HHHHhccchhhhCcHHHHHHHHHHHHH
Confidence            211111111111121111111111 33333344444443332222222     223444455566677777777666665


Q ss_pred             hhc
Q 037562          477 IVK  479 (670)
Q Consensus       477 l~~  479 (670)
                      +..
T Consensus       272 l~~  274 (757)
T COG5096         272 LLV  274 (757)
T ss_pred             Hhh
Confidence            554

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=0.0025  Score=71.86  Aligned_cols=342  Identities=13%  Similarity=0.129  Sum_probs=190.1

Q ss_pred             HHHHHhcCCChHHH-HHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CChhhHHH
Q 037562          242 AMVDGVWSDDNSLQ-LEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS-GTSENTKV  319 (670)
Q Consensus       242 ~l~~~l~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~  319 (670)
                      .+...+.+.++..+ ....|.|.-+-.-. ...........+...+.++|.+.+ +-+|..|.+-++-+-. ++...++.
T Consensus       822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~-~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~  899 (1702)
T KOG0915|consen  822 LLDTLLTSPNPHERQAGCVWLLSLVQYLG-QQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS  899 (1702)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhc-cCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH
Confidence            34445567887765 44556554432221 112122223345578888998888 7888888887765433 33444444


Q ss_pred             HHhCCChHHHHHhhCC-----CCHHH-------------HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCCh
Q 037562          320 VIDHGAVPIFVKLLAS-----PSVDV-------------RKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANL  381 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~-----~~~~v-------------~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~  381 (670)
                      +++ +.+..|..-=+.     ++.++             .-.+-.=|+|++.+-.       +-..+-.++++-+.+...
T Consensus       900 LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~w  971 (1702)
T KOG0915|consen  900 LVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATW  971 (1702)
T ss_pred             HHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchh
Confidence            432 223333220000     11111             1122233445543211       111233445555444455


Q ss_pred             hHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC
Q 037562          382 SMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH  461 (670)
Q Consensus       382 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  461 (670)
                      .-+.-|++-+..++..............+|.|.+.=-+++..|+.....+-..+...+.......+. .+++-|+.-+.+
T Consensus       972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen  972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS 1050 (1702)
T ss_pred             hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc
Confidence            5666677777777766533334444667788887777888888876666555566554444443333 677888888999


Q ss_pred             CCccchhHHHHHHHHhhcCCchh--hHHHHhCCChHHHHHhhccCCchhHHHHH---HHHHHHhhcC-----CHHHHHHH
Q 037562          462 SSSSVLTPALRTIRNIVKGDDFQ--TQCIINCGALPYFLDMLVHNHEESIKKEV---SWIISNITCG-----NREQIQAV  531 (670)
Q Consensus       462 ~~~~v~~~a~~~L~~l~~~~~~~--~~~l~~~~~~~~L~~~l~~~~~~~v~~~a---~~~L~~l~~~-----~~~~~~~l  531 (670)
                      ..+++|+.+|.++..+..+.+..  .+.+-  .+...+...+++- ...||+.|   +.+++.++..     +....+..
T Consensus      1051 kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred             hhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence            99999999999999999876532  12111  2344444555555 55677664   4455555431     11111222


Q ss_pred             HhcCChHHHHH--HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHH-HHHHHH
Q 037562          532 IDSGLIGPIVN--LLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIV-TVCLEG  601 (670)
Q Consensus       532 ~~~~~i~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~-~~a~~~  601 (670)
                      +. .++|.|++  ++ +.-.++|..++.++..++..........+-  ..++.|.+....-++.|. ..++++
T Consensus      1128 l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1128 LD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred             HH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh
Confidence            21 24555554  22 556899999999999999874433322222  267777777776655543 333444

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.0005  Score=67.87  Aligned_cols=398  Identities=15%  Similarity=0.116  Sum_probs=201.7

Q ss_pred             HHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---hhhHH
Q 037562          243 MVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT---SENTK  318 (670)
Q Consensus       243 l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~  318 (670)
                      ++..+. ...+.+..+.+.+|.++.+....+..+.-.-..++..+-.++++.| +.|+-.+...++.+....   |+...
T Consensus       111 l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d-~~v~vs~l~~~~~~v~t~~~~pei~~  189 (728)
T KOG4535|consen  111 LLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD-VNVRVSSLTLLGAIVSTHAPLPEVQL  189 (728)
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHhcCCCCHHHHH
Confidence            333343 3456788899999999988753333333333445666677888888 899999888888876632   22221


Q ss_pred             HHHhC--------------------CChHHHHHhhCC----------------------------------------CCH
Q 037562          319 VVIDH--------------------GAVPIFVKLLAS----------------------------------------PSV  338 (670)
Q Consensus       319 ~i~~~--------------------~~i~~L~~lL~~----------------------------------------~~~  338 (670)
                      .+-..                    -.-+.+.+.-.+                                        ...
T Consensus       190 ~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps  269 (728)
T KOG4535|consen  190 LLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPS  269 (728)
T ss_pred             HhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCc
Confidence            11000                    000011110000                                        001


Q ss_pred             HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC-----CCCCChhh-hhhhHHH
Q 037562          339 DVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG-----KPQPPFNQ-VRPALPV  412 (670)
Q Consensus       339 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~-~~~~i~~  412 (670)
                      .+|-.|..+|.-++.+-.-.+..+.+   +...+..-..+.++.++..++.++..+...     .|...... ..+.+-.
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~~---l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLME---LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            23333334443333222211221111   111111112456677777777776655432     12221111 1111111


Q ss_pred             HH-------HhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh
Q 037562          413 LA-------QLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQT  485 (670)
Q Consensus       413 L~-------~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  485 (670)
                      +.       ..-++.-+..+..++.++.++..........-.....+..+..+-++.+.-++..|.++++.+.-+..-..
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~  426 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ  426 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence            11       01112234566677777777763321111000000111112222222333477788888887776655555


Q ss_pred             HHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc----CCHH---HHHHHHhcCChHHHHHHhh---cCChhHHHHH
Q 037562          486 QCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC----GNRE---QIQAVIDSGLIGPIVNLLQ---NTEFDTKKEA  555 (670)
Q Consensus       486 ~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~----~~~~---~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a  555 (670)
                      ...+-.+....+...+.+. .-.+|..++|+++|++.    +.|.   ....+. .-.+..+++...   ..+.+|+.+|
T Consensus       427 d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~na  504 (728)
T KOG4535|consen  427 DVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNA  504 (728)
T ss_pred             hHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHH
Confidence            5455555666777777776 77899999999999976    2221   222221 123444444433   2357999999


Q ss_pred             HHHHHHhcCCCCH--HHHHHHHHcCCcHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh
Q 037562          556 AWAISNATKFGTH--EQIKHLVREGCVKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA  632 (670)
Q Consensus       556 ~~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (670)
                      ..+|+|+.+.-.+  +........+.+..+.... -...-.|+=+++.+++|++++..---       ..+..     ..
T Consensus       505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l-------q~~~w-----A~  572 (728)
T KOG4535|consen  505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL-------QTAPW-----AS  572 (728)
T ss_pred             HHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc-------cCCCc-----hH
Confidence            9999998764211  0111112223333333322 34566899999999999997654310       00111     12


Q ss_pred             chHHHHHHh-hcCCCHHHHHHHHHHHH
Q 037562          633 EGLEKIENL-QSHDDNGISEKAVEILE  658 (670)
Q Consensus       633 g~~~~l~~L-~~~~~~~v~~~a~~~l~  658 (670)
                      ..+..|..| ..+.|..|+..|..++.
T Consensus       573 ~~F~~L~~Lv~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  573 QAFNALTSLVTSCKNFKVRIRAAAALS  599 (728)
T ss_pred             HHHHHHHHHHHHhccceEeehhhhhhc
Confidence            235666555 67788888888877664

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.86  E-value=4.1e-05  Score=60.13  Aligned_cols=87  Identities=26%  Similarity=0.421  Sum_probs=69.8

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          283 VPRFVEFL-MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       283 l~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      ++.|++.+ ++++ +.+|..|+++|+.+..  +         .+++.|+.+++++++.+|..|+++|+.+.         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57889988 6666 8999999999996532  2         35899999999999999999999999883         


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLF  392 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~  392 (670)
                        ....++.|.+.+.++.+..++..|+.+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              11268899999967677777888888774

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0012  Score=68.99  Aligned_cols=320  Identities=12%  Similarity=0.141  Sum_probs=200.2

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRF-VEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L-~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      -+|.+.+.+.+.+.-++.+|..++..+-...     ..++..  .|.| -.+|..+.++..+.+|...|...   +++. 
T Consensus       135 l~p~IracleHrhsYVRrNAilaifsIyk~~-----~~L~pD--apeLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er-  203 (948)
T KOG1058|consen  135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNF-----EHLIPD--APELIESFLLTEQDPSCKRNAFLMLFTT---DPER-  203 (948)
T ss_pred             hHHHHHHHHhCcchhhhhhhheeehhHHhhh-----hhhcCC--hHHHHHHHHHhccCchhHHHHHHHHHhc---CHHH-
Confidence            3688888899999999999999888774431     112211  2233 33444443378888887776655   3332 


Q ss_pred             HHHHhCCChHHHHHh---hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562          318 KVVIDHGAVPIFVKL---LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF  394 (670)
Q Consensus       318 ~~i~~~~~i~~L~~l---L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  394 (670)
                             ++..+...   +.+-++.++...+..+...|...|.-+..     .+..+..+| .++++.++..|+.+|.++
T Consensus       204 -------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL-~stssaV~fEaa~tlv~l  270 (948)
T KOG1058|consen  204 -------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLL-SSTSSAVIFEAAGTLVTL  270 (948)
T ss_pred             -------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHH-hcCCchhhhhhcceEEEc
Confidence                   23333333   33345777777888888888766654443     477888888 666889999999999999


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHH
Q 037562          395 CRGKPQPPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT  473 (670)
Q Consensus       395 ~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  473 (670)
                      +..+     .....+...++.++.. +|..+..-.+.-|..+......    +++ |++--++++|.+++-+++..++.+
T Consensus       271 S~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~----il~-~l~mDvLrvLss~dldvr~Ktldi  340 (948)
T KOG1058|consen  271 SNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEK----ILQ-GLIMDVLRVLSSPDLDVRSKTLDI  340 (948)
T ss_pred             cCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH----HHH-HHHHHHHHHcCcccccHHHHHHHH
Confidence            8763     2223344445555432 3444444444445444433222    333 667778899999999999999998


Q ss_pred             HHHhhcCCchhhHHHHhCCChHHHHHhhc------cCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037562          474 IRNIVKGDDFQTQCIINCGALPYFLDMLV------HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT  547 (670)
Q Consensus       474 L~~l~~~~~~~~~~l~~~~~~~~L~~~l~------~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~  547 (670)
                      ...++....  ...     ++..|-.-+.      +.++...|..-..++..++...++     +.+.+++.|++.+.+.
T Consensus       341 ~ldLvssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~  408 (948)
T KOG1058|consen  341 ALDLVSSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDS  408 (948)
T ss_pred             HHhhhhhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccC
Confidence            888875321  111     1111111111      122456688888888888877777     3455788999999888


Q ss_pred             ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhhh
Q 037562          548 EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       548 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      ++......+..+...... -|..+..     +++.|++-+. -...++...++|+++..+....
T Consensus       409 N~~aas~vl~FvrE~iek-~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  409 NEAAASDVLMFVREAIEK-FPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             CHHHHHHHHHHHHHHHHh-CchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            877766666666666554 2332222     4555555553 3566778888999888776544

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.009  Score=62.19  Aligned_cols=297  Identities=10%  Similarity=0.107  Sum_probs=187.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      +..+.+-+.+.|+..+.-|+.++.++.+.+   ....+ .    +.+-++|-+++ .+-++..|+-+|..+-..+|+.. 
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-~----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~-  183 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-A----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV-  183 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-h----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence            456666677888889999999999985542   22222 1    22235554443 35788899999999887555432 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc----------------cCChh
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE----------------NANLS  382 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~----------------~~~~~  382 (670)
                        -..+..+.++.+|.+.+-.+...+...+.-++...|+....     .++.-+..+..                -+.|.
T Consensus       184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW  256 (938)
T KOG1077|consen  184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW  256 (938)
T ss_pred             --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence              23467889999999998888888888888888776653222     23322222210                13456


Q ss_pred             HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC----C---hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH
Q 037562          383 MLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN----D---EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL  455 (670)
Q Consensus       383 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~----~---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L  455 (670)
                      ++..++..|.++-.............++..++...+..    +   ...+..++.-..+++.+-+..-+.+.  ..+..|
T Consensus       257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~L  334 (938)
T KOG1077|consen  257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQL  334 (938)
T ss_pred             HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHH
Confidence            77778888887733222222333344445444444421    1   12223333333333322222222222  466788


Q ss_pred             HHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcC
Q 037562          456 VELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSG  535 (670)
Q Consensus       456 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~  535 (670)
                      -.++.+....+|.-|+..+..++..... ...+...  .+.++..|+...|..+|+.|+..|-.+|..+  +.+.     
T Consensus       335 g~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~--Nak~-----  404 (938)
T KOG1077|consen  335 GQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS--NAKQ-----  404 (938)
T ss_pred             HHHhhcccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh--hHHH-----
Confidence            8999999999999999999999885432 3323332  7788899985559999999999999998632  2222     


Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                      ++..|++.+.+.++.+|+..+-=++-++.
T Consensus       405 IV~elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  405 IVAELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            45667888888888888877666666655

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.85  E-value=3e-05  Score=50.36  Aligned_cols=41  Identities=37%  Similarity=0.669  Sum_probs=37.9

Q ss_pred             CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          524 NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       524 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                      ++++++.+++.|++|.|++++.+++++++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788899999999999999999999999999999999863

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.85  E-value=0.00028  Score=66.99  Aligned_cols=189  Identities=14%  Similarity=0.096  Sum_probs=118.2

Q ss_pred             cCCChHHHHHHHHHHHHHhcCC-CCCcHHHHHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 037562          248 WSDDNSLQLEATTLFINLLSFD-RSPPIDEVIQ--SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHG  324 (670)
Q Consensus       248 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~--~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  324 (670)
                      .+.+.+.+..|+..|..+..+. .......+.+  ..++..+...+.+.. ..+...|+.++..++......-+... ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            4678899999999999998764 1222233322  145567777777766 68999999999999874433333333 24


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC-CCh
Q 037562          325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ-PPF  403 (670)
Q Consensus       325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~  403 (670)
                      ++|.|+..+.++...+++.|..+|..++...+....      .+...+.....+.++.++..++..+..+....+. ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            688999999999999999999999999976541111      1133444444888899999999998888776541 111


Q ss_pred             ----hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHH
Q 037562          404 ----NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQ  444 (670)
Q Consensus       404 ----~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~  444 (670)
                          .....+++.+.+++.+.+++||..|-.++..+....++...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence                12256888899999999999999999999988655444433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.85  E-value=0.0036  Score=65.13  Aligned_cols=254  Identities=15%  Similarity=0.153  Sum_probs=164.9

Q ss_pred             CcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-----C
Q 037562          272 PPIDEVIQSGVVPRFVEFL---------MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP-----S  337 (670)
Q Consensus       272 ~~~~~~~~~g~l~~L~~ll---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~-----~  337 (670)
                      .....+....++..|.++-         .....+.+...|.+||+|+...++..|+.+.+.|..+.++..|+..     +
T Consensus        13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~   92 (446)
T PF10165_consen   13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP   92 (446)
T ss_pred             ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence            3444455444555555544         2222379999999999999999999999999999999999999875     7


Q ss_pred             HHHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHHHhccc----------------CChhHHHHHHHHHHhhhcCCCC
Q 037562          338 VDVRKQTVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNEN----------------ANLSMLRTATWTLFNFCRGKPQ  400 (670)
Q Consensus       338 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~Ll~~l~~~----------------~~~~~~~~a~~~L~~l~~~~~~  400 (670)
                      .++.....+.|.-++...+..+..+.+. +++..+...+...                .+......++..+.|+....+.
T Consensus        93 ~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~  172 (446)
T PF10165_consen   93 SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK  172 (446)
T ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence            8888889999988888777777666554 6677666665211                1334556788889999877654


Q ss_pred             CChhhh----hhhHHHHHHhh---cc--CChhHHHHHHHHHHHhccCChHHH-----------HHHHHcCCHHHHHHhcC
Q 037562          401 PPFNQV----RPALPVLAQLI---RS--NDEEVLTDACWALSYLSDGTNDKV-----------QAVIEAGVYPRLVELLG  460 (670)
Q Consensus       401 ~~~~~~----~~~i~~L~~lL---~~--~~~~v~~~al~~L~~l~~~~~~~~-----------~~~~~~~~i~~L~~lL~  460 (670)
                      ......    ..++..+..++   ..  +.......++.+|.|+--......           ........+..++.+|.
T Consensus       173 ~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld  252 (446)
T PF10165_consen  173 SVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLD  252 (446)
T ss_pred             ccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHH
Confidence            433222    33444444442   11  135677888888888742211110           00111234555565554


Q ss_pred             C----CC----ccchhHHHHHHHHhhcCCchhhHHHHh----------------CCChHHHHHhhccCCchhHHHHHHHH
Q 037562          461 H----SS----SSVLTPALRTIRNIVKGDDFQTQCIIN----------------CGALPYFLDMLVHNHEESIKKEVSWI  516 (670)
Q Consensus       461 ~----~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~----------------~~~~~~L~~~l~~~~~~~v~~~a~~~  516 (670)
                      .    ..    .+.....+.+|.+++......++.+..                ..+-..|+.++.+. .+.++..++..
T Consensus       253 ~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vael  331 (446)
T PF10165_consen  253 KRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAEL  331 (446)
T ss_pred             HHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHH
Confidence            3    11    245566777888888765444443321                23456788999888 69999999999


Q ss_pred             HHHhhcCCHH
Q 037562          517 ISNITCGNRE  526 (670)
Q Consensus       517 L~~l~~~~~~  526 (670)
                      +-.+|..+..
T Consensus       332 lf~Lc~~d~~  341 (446)
T PF10165_consen  332 LFVLCKEDAS  341 (446)
T ss_pred             HHHHHhhhHH
Confidence            9888765433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.023  Score=61.89  Aligned_cols=357  Identities=17%  Similarity=0.149  Sum_probs=200.2

Q ss_pred             CCHHHHHHhhc------CC-CCHHHHHHHHHHHHHHcC---CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 037562          281 GVVPRFVEFLM------RQ-DYPQLQFKAAWALTNIAS---GTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGN  350 (670)
Q Consensus       281 g~l~~L~~ll~------~~-~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  350 (670)
                      ++++.+++.+.      .+ +++.-+.-|.+.+++++.   .....+ -.++.-+++.+...++++..-+|..|+|+++.
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            35566666665      22 236777788888888874   111111 12222334555666788889999999999999


Q ss_pred             hhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC---ChhhhhhhHHHHHHhhccCChhHHHH
Q 037562          351 VAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP---PFNQVRPALPVLAQLIRSNDEEVLTD  427 (670)
Q Consensus       351 l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~i~~L~~lL~~~~~~v~~~  427 (670)
                      ++..+-.....+.  .++....+.+.++.+-.|+..|+.+|..+..+.+..   ....+.+.++.++++.+.-+.+....
T Consensus       489 ~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~  566 (1010)
T KOG1991|consen  489 FSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN  566 (1010)
T ss_pred             HHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence            9943322122222  256777788866788899999999999999887433   23334666677777776555444444


Q ss_pred             HHHHH-HHhccCChHHHHHHHHcCCHHHHHHhcCC---CCccc---hhHHHHHHHHhhc------CCchhhHHHHhCCCh
Q 037562          428 ACWAL-SYLSDGTNDKVQAVIEAGVYPRLVELLGH---SSSSV---LTPALRTIRNIVK------GDDFQTQCIINCGAL  494 (670)
Q Consensus       428 al~~L-~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~v---~~~a~~~L~~l~~------~~~~~~~~l~~~~~~  494 (670)
                      ++..+ +..+..-......+.. .+.....+++++   .++..   ...|.++|..+..      ..++..+ -.+...+
T Consensus       567 vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l  644 (1010)
T KOG1991|consen  567 VMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVL  644 (1010)
T ss_pred             HHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence            44333 2222211111111222 455566677764   22222   2334444433321      1111111 2244566


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037562          495 PYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHL  574 (670)
Q Consensus       495 ~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  574 (670)
                      +.+-.++++. -.++-+++...+..++...++....+.  ++++.+.+.+.....+.-....-+|.|+...|.+.....-
T Consensus       645 ~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~  721 (1010)
T KOG1991|consen  645 PVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNP  721 (1010)
T ss_pred             HHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccc
Confidence            6777777777 777778888888777664433222222  3677788888887888889999999999887654322110


Q ss_pred             -HHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc-CCCHHHH
Q 037562          575 -VREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS-HDDNGIS  650 (670)
Q Consensus       575 -~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~  650 (670)
                       ...-.......++.+  ....-.+.|++.+..++-.....         ..++...+.    -.++..+.. .++...+
T Consensus       722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~---------~dq~iplf~----~~a~~~l~~~~e~s~~~  788 (1010)
T KOG1991|consen  722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGL---------LDQYIPLFL----ELALSRLTREVETSELR  788 (1010)
T ss_pred             hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCc---------HhhHhHHHH----HHHHHHHhccccchHHH
Confidence             001123333344443  22334456778887776554331         122344442    122344433 4556667


Q ss_pred             HHHHHHHH
Q 037562          651 EKAVEILE  658 (670)
Q Consensus       651 ~~a~~~l~  658 (670)
                      ..+.+++-
T Consensus       789 ~~~leVvi  796 (1010)
T KOG1991|consen  789 VMLLEVVI  796 (1010)
T ss_pred             HHHHHHHH
Confidence            66665543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.82  E-value=0.0008  Score=73.85  Aligned_cols=292  Identities=14%  Similarity=0.151  Sum_probs=183.2

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC----CC
Q 037562          326 VPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK----PQ  400 (670)
Q Consensus       326 i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~----~~  400 (670)
                      ++.+...+++ .....+..|+..|..++.....  +..++ .++|.++.++ .+...+||..|+.+|..+...-    +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LD-RVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLD-RVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHh-hhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3444444544 4556777888888888743321  11111 2578888888 7788899999998888765432    44


Q ss_pred             CChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562          401 PPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK  479 (670)
Q Consensus       401 ~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  479 (670)
                      .......-++|.|..++.+ ....+|..-+.+|+.++....    .+++.+.-.....++.+++.+....         .
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset~~~---------~  566 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSETAPE---------Q  566 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccccccc---------c
Confidence            4555567788999999988 456778888888888874322    1222222223333445544331000         0


Q ss_pred             CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562          480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAW  557 (670)
Q Consensus       480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  557 (670)
                      ......+.+. .++-+....++.++ ++.||+.-...+..+|.  +...     -+.=+++.|+..|.+.|+.+|..-..
T Consensus       567 ~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k-----sND~iLshLiTfLNDkDw~LR~aFfd  639 (1431)
T KOG1240|consen  567 NYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK-----SNDVILSHLITFLNDKDWRLRGAFFD  639 (1431)
T ss_pred             ccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc-----cccchHHHHHHHhcCccHHHHHHHHh
Confidence            0111122222 23455666777777 78899888888887775  1111     11226889999999999999887666


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH
Q 037562          558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK  637 (670)
Q Consensus       558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  637 (670)
                      .|.-++..-....    +++..+|.|.+-+.++.+.|...|+.++..+++.+--.+.         .+.++      ++.
T Consensus       640 sI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~---------~v~~i------~~~  700 (1431)
T KOG1240|consen  640 SIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP---------AVKDI------LQD  700 (1431)
T ss_pred             hccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH---------HHHHH------HHh
Confidence            6664443211110    2344788889999999999999999999999987654321         12222      355


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHh
Q 037562          638 IENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       638 l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      +.-|+-|+|.=|+..+..+|...
T Consensus       701 v~PlL~hPN~WIR~~~~~iI~~~  723 (1431)
T KOG1240|consen  701 VLPLLCHPNLWIRRAVLGIIAAI  723 (1431)
T ss_pred             hhhheeCchHHHHHHHHHHHHHH
Confidence            56678899999998887776554

>PF05536 Neurochondrin: Neurochondrin

Probab=97.78  E-value=0.0016  Score=69.34  Aligned_cols=236  Identities=14%  Similarity=0.126  Sum_probs=165.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh---hHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE---NTKVVIDHGAVPIFVKLLAS-------PSVDVRKQTVWALGNV  351 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~l  351 (670)
                      .+..-+.+|+..+ ++-|..++-.+.++...++.   .++.+.++=+.+.+-++|++       +....+.-|+.+|..+
T Consensus         6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3566788898888 68899999999999986553   33457777777888889987       4467888999999999


Q ss_pred             hCCCchhH--HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHH
Q 037562          352 AGDSPRCR--DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDAC  429 (670)
Q Consensus       352 ~~~~~~~~--~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al  429 (670)
                      |.. |+..  ..+.  +-+|.+++.+....+..+...+..+|..++..+.........|.++.|...+.+ .+...+.++
T Consensus        85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            974 3332  2222  259999999966666689999999999999776666666678999999999887 556677888


Q ss_pred             HHHHHhccCChHHHHH---HHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh-hHHH----HhCCChHHHHHhh
Q 037562          430 WALSYLSDGTNDKVQA---VIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ-TQCI----INCGALPYFLDML  501 (670)
Q Consensus       430 ~~L~~l~~~~~~~~~~---~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l----~~~~~~~~L~~~l  501 (670)
                      .++.++........-.   -.-..+++.+...........+..++..|+.+-...+.. ....    .-..+...+..++
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            8888876443311100   000134566666666667778888999999997755321 1111    1223455667777


Q ss_pred             ccCCchhHHHHHHHHHHHhhc
Q 037562          502 VHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       502 ~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      ++...+.-|..|....+.+..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            777577777777777666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.78  E-value=3.7e-05  Score=84.44  Aligned_cols=147  Identities=16%  Similarity=0.139  Sum_probs=85.9

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|.+.++ +++.++..   ..++|+.|++++|. +..+|...  +++|+.|+++ |.+++.+.  ..+  .++|+.|
T Consensus       221 nL~~L~Ls~N-~LtsLP~~---l~~~L~~L~Ls~N~-L~~LP~~l--~s~L~~L~Ls-~N~L~~LP--~~l--~~sL~~L  288 (754)
T PRK15370        221 NIKTLYANSN-QLTSIPAT---LPDTIQEMELSINR-ITELPERL--PSALQSLDLF-HNKISCLP--ENL--PEELRYL  288 (754)
T ss_pred             CCCEEECCCC-ccccCChh---hhccccEEECcCCc-cCcCChhH--hCCCCEEECc-CCccCccc--ccc--CCCCcEE
Confidence            7888888876 47766642   23577888887764 55555432  3467777776 34566541  111  2467777


Q ss_pred             ccccccccceecccc-----------ccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccc
Q 037562          103 EIESCDKITEIVLVD-----------DVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIF  171 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~-----------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~  171 (670)
                      ++++| +++.++..-           ..........+++|+.|.+.++. ++.++..    ..++|+.|++.+| ++..+
T Consensus       289 ~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~----l~~sL~~L~Ls~N-~L~~L  361 (754)
T PRK15370        289 SVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPAS----LPPELQVLDVSKN-QITVL  361 (754)
T ss_pred             ECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChh----hcCcccEEECCCC-CCCcC
Confidence            77766 344433100           00000011234677777777763 5555432    1368888888887 46777


Q ss_pred             ccCCcCCCCccceeeeecc
Q 037562          172 SGGELSTPNLHKVQLSRWD  190 (670)
Q Consensus       172 p~~~~~~~~L~~l~i~~~~  190 (670)
                      |..+  .++|+.|+++++.
T Consensus       362 P~~l--p~~L~~LdLs~N~  378 (754)
T PRK15370        362 PETL--PPTITTLDVSRNA  378 (754)
T ss_pred             Chhh--cCCcCEEECCCCc
Confidence            7644  3688888887643

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.77  E-value=0.00024  Score=67.43  Aligned_cols=185  Identities=17%  Similarity=0.199  Sum_probs=116.3

Q ss_pred             cCCCCccchhHHHHHHHHhhcCC--chhhHHHHh--CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc
Q 037562          459 LGHSSSSVLTPALRTIRNIVKGD--DFQTQCIIN--CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS  534 (670)
Q Consensus       459 L~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~--~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~  534 (670)
                      -.+.+++.|..|+.-|..++.++  ......+.+  ..++..+...+.+. ...+...|+.++..++...........+ 
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-   93 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-   93 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence            35678999999999999998766  222222221  14567777888877 8889999999999998743333433333 


Q ss_pred             CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562          535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT-HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEM  613 (670)
Q Consensus       535 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  613 (670)
                      .++|.|+..+.++..-++..|..+|..++.... ...  .     .++.+....++.++.+|..++..+..++.......
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~--~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~  166 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK--I-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS  166 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H--H-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH--H-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence            478899999988889999999999999998754 111  1     15667778899999999999999999887655111


Q ss_pred             ccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          614 NTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ..      ... ...  -....+.+.....+.+++||+.|..++..|+
T Consensus       167 ~~------l~~-~~~--~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  167 SV------LQK-SAF--LKQLVKALVKLLSDADPEVREAARECLWALY  205 (228)
T ss_dssp             GG------G---HHH--HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred             hh------hcc-cch--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence            10      000 000  1223677888899999999999988887774

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.00015  Score=71.36  Aligned_cols=297  Identities=14%  Similarity=0.109  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-----CCchhHHHHHhcCChH-
Q 037562          296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG-----DSPRCRDLVLSQGALI-  369 (670)
Q Consensus       296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~~~~i~-  369 (670)
                      ..+|..|..+|..++.+-.-.+..+++  ....+..-+.+..+.++..+..++..+..     ..|+..+.-...+.+- 
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            367777888888777633333333322  33444455667888999988888877652     2222211111112111 


Q ss_pred             -----HHHHHhcccCChhHHHHHHHHHHhhhcCC----CCCChhhhhhhHHHHH-HhhccCChhHHHHHHHHHHHhccCC
Q 037562          370 -----PLLAELNENANLSMLRTATWTLFNFCRGK----PQPPFNQVRPALPVLA-QLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       370 -----~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~-~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                           +.-....+...+..+..+|-++.++....    ++.+.    ...+... ..=++.+.-++..|+++++.+.-+.
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~----T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp  422 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQ----TLCITFLLGCNDSKNRLVKAAASRALGVYVLHP  422 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcch----hhhHHHHhcccchHHHHHHHHHHhhceeEEecc
Confidence                 11122233444567778888888887554    22111    1111111 1112334557888888888887666


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC----Cch---hhHHHHhCCChHHHHHhhc--cCCchhHH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG----DDF---QTQCIINCGALPYFLDMLV--HNHEESIK  510 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~l~~~~~~~~L~~~l~--~~~~~~v~  510 (670)
                      .-......-......+...+.+..-..|..++|+++|++..    .+.   ....+.- -.+..++..-.  +..+..|+
T Consensus       423 ~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~  501 (728)
T KOG4535|consen  423 CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVK  501 (728)
T ss_pred             chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhh
Confidence            55544444446667777778887788999999999999742    121   2221211 11222222221  22267899


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHh-------cCChHHHHHH-hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH
Q 037562          511 KEVSWIISNITCGNREQIQAVID-------SGLIGPIVNL-LQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKP  582 (670)
Q Consensus       511 ~~a~~~L~~l~~~~~~~~~~l~~-------~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~  582 (670)
                      ..|..+|+|+..-    .+.+.+       .+-+..+... .-.....|+-+||++++|+..+..-.....=....+++.
T Consensus       502 ~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~  577 (728)
T KOG4535|consen  502 SNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA  577 (728)
T ss_pred             hHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence            9999999998641    111111       1122222222 124567999999999999998632111000011224666


Q ss_pred             HHhhcc-CCChHHHHHHHHHHH
Q 037562          583 LCDLLL-CADPKIVTVCLEGLE  603 (670)
Q Consensus       583 L~~ll~-~~~~~v~~~a~~~l~  603 (670)
                      |..++. ..+-+||.+|..+|.
T Consensus       578 L~~Lv~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  578 LTSLVTSCKNFKVRIRAAAALS  599 (728)
T ss_pred             HHHHHHHhccceEeehhhhhhc
Confidence            777663 456667766666553

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.02  Score=62.80  Aligned_cols=260  Identities=11%  Similarity=0.094  Sum_probs=158.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      +++..|.+.+++.+ ..|+-.|++.++.++...|..   +. ..++...+.++.. +++..-..++-+|+.++...--.-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            47888888999999 799999999999999866622   22 2356667775544 345666688999999985432211


Q ss_pred             HHHHhcCChHHHHHHhcc-------cCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHH-HHHhhccCChhHHHHHHH
Q 037562          360 DLVLSQGALIPLLAELNE-------NANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPV-LAQLIRSNDEEVLTDACW  430 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~-------~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~-L~~lL~~~~~~v~~~al~  430 (670)
                      ..+.+  +++.+++.+..       .....+|..||++++.+++..... .........+. +...+-+.+-.+|..|..
T Consensus       416 s~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            22222  45556655522       234578999999999999876222 22222333332 223444667788888888


Q ss_pred             HHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh-hccCCchhH
Q 037562          431 ALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM-LVHNHEESI  509 (670)
Q Consensus       431 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~-l~~~~~~~v  509 (670)
                      ++.......... .     .+++ ++...+.-....+.++...+..-....+.....++     ..++.. +.+- +..+
T Consensus       494 AlqE~VGR~~n~-p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HW-d~~i  560 (1133)
T KOG1943|consen  494 ALQENVGRQGNF-P-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHW-DVKI  560 (1133)
T ss_pred             HHHHHhccCCCC-C-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccc-cHHH
Confidence            887665331111 0     1111 22222222233455555555544444444444332     233333 5566 8999


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       510 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                      |+.|+++|.+++...++    ......++.+++...+.+...+.-+..+.+.++.
T Consensus       561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            99999999998765444    2445688999998888888887777666666654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.75  E-value=5.2e-05  Score=59.49  Aligned_cols=86  Identities=30%  Similarity=0.417  Sum_probs=69.8

Q ss_pred             HHHHHHHh-cCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          240 LPAMVDGV-WSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       240 i~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      |+.|++.+ +++++.++..|+++|.++-..            ..++.|++++++++ +.+|..|+++|+.+..       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDP------------EAIPALIELLKDED-PMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH------------HHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence            57889988 788999999999999844111            25899999998888 8999999999998842       


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 037562          319 VVIDHGAVPIFVKLLAS-PSVDVRKQTVWALG  349 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~  349 (670)
                          ...++.|.+++.+ ++..++..|+.+|+
T Consensus        61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ----PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                2378999998877 45667999998875

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.014  Score=57.54  Aligned_cols=222  Identities=14%  Similarity=0.134  Sum_probs=164.0

Q ss_pred             hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCC----CCCc----HHHHHHcCCHHHHHHhhcCCC-----CHHHHHHHH
Q 037562          237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFD----RSPP----IDEVIQSGVVPRFVEFLMRQD-----YPQLQFKAA  303 (670)
Q Consensus       237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~----~~~~----~~~~~~~g~l~~L~~ll~~~~-----~~~v~~~a~  303 (670)
                      +.+++.++++|.+++.++....+..+..+...+    +.+.    ++.+++.++++.|++-+..=+     ..+-...+.
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            467899999999999999999999998885432    1221    566778899999988776432     134556678


Q ss_pred             HHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc----c
Q 037562          304 WALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN----E  377 (670)
Q Consensus       304 ~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~----~  377 (670)
                      ..+-|+..-.+.....+++.|.+..|+.-+..  +-...+..|..++.-+..++.+.+......+++..+++.+.    +
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            88899998889999999999999998885543  45566778889999888888878888888888999988773    1


Q ss_pred             c----CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh--HHHHHHHHcCC
Q 037562          378 N----ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN--DKVQAVIEAGV  451 (670)
Q Consensus       378 ~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~~~~  451 (670)
                      +    ...++..+...+|+.+.....+........+++...-+++. ....+..++.+|-....+++  .+...+++..+
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG  362 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG  362 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence            1    13356677778888777776666555556677766656654 45667788888888876666  56666777776


Q ss_pred             HHHHHHhc
Q 037562          452 YPRLVELL  459 (670)
Q Consensus       452 i~~L~~lL  459 (670)
                      +..+....
T Consensus       363 LrtiF~~F  370 (536)
T KOG2734|consen  363 LRTIFPLF  370 (536)
T ss_pred             HHHHHHHH
Confidence            66666553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.69  E-value=1.7e-05  Score=88.50  Aligned_cols=126  Identities=20%  Similarity=0.291  Sum_probs=100.0

Q ss_pred             ccCCCCcEEEEecCCCCccccCC-----Cc-cccccceeeecccccccccccchhhhcccccceeccccccccceecccc
Q 037562           44 SVMNNLVILCVHCCDHLINLVPS-----ST-SFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVD  117 (670)
Q Consensus        44 ~~~~~L~~L~i~~c~~l~~~~~~-----~~-~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~  117 (670)
                      ..+.+|+.|.|.+|...+.....     .. +|++|..+.+.+|..++.+   .|....|+|+.|++.+|+.+++++...
T Consensus       714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e~~i~~~  790 (889)
T KOG4658|consen  714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLEDIIPKL  790 (889)
T ss_pred             ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc---chhhccCcccEEEEecccccccCCCHH
Confidence            56889999999999876432211     12 3889999999999999987   677788999999999999999887644


Q ss_pred             cccccc--ccccccccccc-cccccccccccccCCcccCCCCccEEeEecCCCccccccC
Q 037562          118 DVVAQD--EVITFRELKEL-NLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG  174 (670)
Q Consensus       118 ~~~~~~--~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~  174 (670)
                      ......  ....|+++..+ .+.+.+.+++++..  +..+|+|+.+.+..||++.++|..
T Consensus       791 k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~--~l~~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  791 KALLELKELILPFNKLEGLRMLCSLGGLPQLYWL--PLSFLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             HHhhhcccEEecccccccceeeecCCCCceeEec--ccCccchhheehhcCcccccCccc
Confidence            332211  24678899999 69999999998874  566788999999999999999864

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.015  Score=57.41  Aligned_cols=238  Identities=13%  Similarity=0.130  Sum_probs=165.1

Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---------hhhHHHHHhCCChHHHH
Q 037562          260 TLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT---------SENTKVVIDHGAVPIFV  330 (670)
Q Consensus       260 ~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~i~~~~~i~~L~  330 (670)
                      +.+.-++..  ++-...+++.++++.++.+|.+.+ .+|..+.+..+..++..+         ..-.+.+++.++++.|+
T Consensus       106 Q~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  106 QEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            344444443  555667889999999999999999 799999999999988633         23456778889999999


Q ss_pred             HhhCCCCHHH------HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-CChhHHHHHHHHHHhhhcCCCC-CC
Q 037562          331 KLLASPSVDV------RKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN-ANLSMLRTATWTLFNFCRGKPQ-PP  402 (670)
Q Consensus       331 ~lL~~~~~~v------~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~-~~  402 (670)
                      +-+..-++.+      ...++..+-|+....+.....+.+.|.+.-|+..+... .-..-..+|..+++-+..++.. ..
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            9876533333      34677888899888888888888888888888765333 3335566788888887776642 22


Q ss_pred             hhhhhhhHHHHHHhhc----cC-----ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHH
Q 037562          403 FNQVRPALPVLAQLIR----SN-----DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT  473 (670)
Q Consensus       403 ~~~~~~~i~~L~~lL~----~~-----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  473 (670)
                      ....-.++..+++-+.    ++     ..+..++...+|+.+..... ....++...+++...-+++. ....+..|+.+
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv  340 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSRGSALKV  340 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence            2222345555544432    21     24677788888888776654 44556776777777766666 44567788999


Q ss_pred             HHHhhcCCc--hhhHHHHhCCChHHHHHhhc
Q 037562          474 IRNIVKGDD--FQTQCIINCGALPYFLDMLV  502 (670)
Q Consensus       474 L~~l~~~~~--~~~~~l~~~~~~~~L~~~l~  502 (670)
                      |-....+.+  ..+..+++..++..+.....
T Consensus       341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            988888776  56677777777777666654

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.67  E-value=0.0029  Score=58.02  Aligned_cols=224  Identities=18%  Similarity=0.258  Sum_probs=148.3

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      +..+.+...++....+..++.+|.++-.            ...++.++..+.+.+ .+-||..|+.+|+.+..       
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~------------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-------   98 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQD------------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------   98 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhcc------------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-------
Confidence            4444444444433444455556655522            236888888876543 37899999999999874       


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---------------chhHHHHHhcCChHHHHHHhcccCChhH
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS---------------PRCRDLVLSQGALIPLLAELNENANLSM  383 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---------------~~~~~~i~~~~~i~~Ll~~l~~~~~~~~  383 (670)
                          ...++.+-++.+++-..+++.+..++..+-..+               |...   ...+-+..+-..+.+.+.+..
T Consensus        99 ----~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~  171 (289)
T KOG0567|consen   99 ----PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLF  171 (289)
T ss_pred             ----hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHH
Confidence                245677777777788888888777777764211               1111   011224444444544444444


Q ss_pred             HH-HHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-
Q 037562          384 LR-TATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-  461 (670)
Q Consensus       384 ~~-~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-  461 (670)
                      .+ .|.+.|.|+-.          ...+..+..-+..++.-.+..+..+++.+-..           -.++.+.+.|.+ 
T Consensus       172 ~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~  230 (289)
T KOG0567|consen  172 ERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDE  230 (289)
T ss_pred             HHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhh
Confidence            33 66677777654          34667788888888888999999999987532           345667777765 


Q ss_pred             -CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          462 -SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       462 -~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                       .++-||..|+.+|+.++.  +         ..++.|.+.+.+. .+-|++.+..++..+-.
T Consensus       231 ~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~-~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  231 TEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDE-ERVVRESCEVALDMLEY  280 (289)
T ss_pred             hcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHHH
Confidence             466799999999998875  2         2456777888888 88888888888876643

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.0015  Score=68.19  Aligned_cols=262  Identities=15%  Similarity=0.167  Sum_probs=152.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      ....|.+.|++.+++.++.-++--|+-.+.++..       ..+.+.+-..|...+.-.-+.|..+++-+.-+... .+ 
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~-------~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e-  484 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN-------EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE-  484 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhccccc-------HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH-
Confidence            4556666666665566676666666655543321       11234555556555555555555555555433221 11 


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHH--HHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHH--hcc
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATW--TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSY--LSD  437 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~--~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~--l~~  437 (670)
                           ++.-++..-.......+++-..-  +|....+.         ..+=+.+-+++.+.|+-+|...+.+++-  ...
T Consensus       485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq---------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT  550 (929)
T KOG2062|consen  485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ---------EDADPLIKELLRDKDPILRYGGMYTLALAYVGT  550 (929)
T ss_pred             -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh---------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc
Confidence                 23444444444444555553222  23333332         2344667778888888888776655532  222


Q ss_pred             CChHHHHHHHHcCCHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562          438 GTNDKVQAVIEAGVYPRLVEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWI  516 (670)
Q Consensus       438 ~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~  516 (670)
                      .+         .+++..++.. +++.+.+||..|..+|+-++..+++         ..+..+++|....++.||..|+.+
T Consensus       551 gn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~A  612 (929)
T KOG2062|consen  551 GN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMA  612 (929)
T ss_pred             Cc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHH
Confidence            21         2566777777 6778899999999999998886665         355667888777699999999999


Q ss_pred             HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH
Q 037562          517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK  593 (670)
Q Consensus       517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  593 (670)
                      |+-.|++....       ..+..|-.+..+...-||+.|+.+++-+....++.....  -.+..+.+.+.+.+++.+
T Consensus       613 LGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  613 LGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKHED  680 (929)
T ss_pred             HhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhhhH
Confidence            99998853321       123333444456667789999988887765433221111  122344455555554444

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.01  Score=54.54  Aligned_cols=224  Identities=14%  Similarity=0.178  Sum_probs=135.3

Q ss_pred             hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCChHHHHH
Q 037562          368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTNDKVQA  445 (670)
Q Consensus       368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~  445 (670)
                      +..+.+.. .+.+...+..++++|......          ..+|.++..+...  .+-||..|..+|+.+...       
T Consensus        38 i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~----------~Av~~l~~vl~desq~pmvRhEAaealga~~~~-------   99 (289)
T KOG0567|consen   38 IKAITKAF-IDDSALLKHELAYVLGQMQDE----------DAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP-------   99 (289)
T ss_pred             HHHHHHhc-ccchhhhccchhhhhhhhccc----------hhhHHHHHHhcccccchHHHHHHHHHHHhhcch-------
Confidence            33444444 223444555667777766653          4677888777654  467788888888887621       


Q ss_pred             HHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh----HHH--------HhCCChHHHHHhhccCCchh-HHHH
Q 037562          446 VIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQT----QCI--------INCGALPYFLDMLVHNHEES-IKKE  512 (670)
Q Consensus       446 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~----~~l--------~~~~~~~~L~~~l~~~~~~~-v~~~  512 (670)
                          ...+.+-+..+++-..|+..+..++..+-.......    ...        ...+-+..+-..+.+...+. -|..
T Consensus       100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~  175 (289)
T KOG0567|consen  100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR  175 (289)
T ss_pred             ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence                334555566666667777777777766643221110    000        01122333444443332222 3445


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc--cCC
Q 037562          513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL--LCA  590 (670)
Q Consensus       513 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll--~~~  590 (670)
                      |.+.|.|+..  ++         .+..+++-+..++.-.|.+++++++.+-...            .|+.|.+.|  ..+
T Consensus       176 amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E  232 (289)
T KOG0567|consen  176 AMFYLRNIGT--EE---------AINALIDGLADDSALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETE  232 (289)
T ss_pred             hhhHhhccCc--HH---------HHHHHHHhcccchHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhc
Confidence            6666666621  22         3455566666667788889999998886632            566676666  346


Q ss_pred             ChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562          591 DPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       591 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      ++.||+-|..||+.+...                        ..++.|.++.+++.+-|++-+..+++-+
T Consensus       233 ~pMVRhEaAeALGaIa~e------------------------~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  233 HPMVRHEAAEALGAIADE------------------------DCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             chHHHHHHHHHHHhhcCH------------------------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            788899999998875521                        1256678888888888888888777755

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.60  E-value=0.00037  Score=54.84  Aligned_cols=95  Identities=18%  Similarity=0.256  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc
Q 037562          509 IKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL  588 (670)
Q Consensus       509 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  588 (670)
                      .|..+..+|+.++.+-+.......+ .+++.++..+.+++.+||..|+.+|.+++.....+...++-  .+++.|.++..
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence            3667788888887654444444443 48899999999999999999999999999864444444333  48899999999


Q ss_pred             CCChHHHHHHHHHHHHHHH
Q 037562          589 CADPKIVTVCLEGLENILK  607 (670)
Q Consensus       589 ~~~~~v~~~a~~~l~~l~~  607 (670)
                      +.++.|+..| ..|.++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999988665 77777664

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.60  E-value=0.014  Score=60.89  Aligned_cols=260  Identities=15%  Similarity=0.109  Sum_probs=166.1

Q ss_pred             hcchhhhhhccccCCCccccchhhhhhccHHHHHHHh----------cCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562          211 KKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGV----------WSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS  280 (670)
Q Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  280 (670)
                      ++++.+.+++.........        +.+..|++.-          ...+..+..+|+++|+|+.-.. ...++.+.+.
T Consensus         3 ~~LRiLsRd~~~~~~l~~~--------~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~   73 (446)
T PF10165_consen    3 ETLRILSRDPTGLDPLFTE--------EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDL   73 (446)
T ss_pred             HHHHHHccCcccchhhccH--------HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence            4555566666555444432        2345555544          2567899999999999998764 5556777889


Q ss_pred             CCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHcCCChhhHHHHHhC-CChHHHHHhhCC-----------------CC
Q 037562          281 GVVPRFVEFLMRQ-----DYPQLQFKAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLAS-----------------PS  337 (670)
Q Consensus       281 g~l~~L~~ll~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~L~~lL~~-----------------~~  337 (670)
                      |..+.+++.++..     + .++.....+.|.-++...+..+..+++. +++..+...+..                 .+
T Consensus        74 ~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~  152 (446)
T PF10165_consen   74 GLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMD  152 (446)
T ss_pred             CcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcch
Confidence            9999999999876     4 7999999999999998788888777655 677777665521                 13


Q ss_pred             HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc--------CChhHHHHHHHHHHhhhcCCCC--------C
Q 037562          338 VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN--------ANLSMLRTATWTLFNFCRGKPQ--------P  401 (670)
Q Consensus       338 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~--------~~~~~~~~a~~~L~~l~~~~~~--------~  401 (670)
                      ......++.++.|+..+.+.... -.....++.++..+...        .......++..+|.|+--....        .
T Consensus       153 ~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~  231 (446)
T PF10165_consen  153 EEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQ  231 (446)
T ss_pred             HHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCc
Confidence            44566788899999865544322 01223455555554322        1235666888888877321100        0


Q ss_pred             ----ChhhhhhhHHHHHHhhcc----C----ChhHHHHHHHHHHHhccCChHHHHHHHH----------------cCCHH
Q 037562          402 ----PFNQVRPALPVLAQLIRS----N----DEEVLTDACWALSYLSDGTNDKVQAVIE----------------AGVYP  453 (670)
Q Consensus       402 ----~~~~~~~~i~~L~~lL~~----~----~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~~~i~  453 (670)
                          ........+..++.+|..    .    -.+.....+.+|.+++.......+.+..                ..+-.
T Consensus       232 ~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~  311 (446)
T PF10165_consen  232 SSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRS  311 (446)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence                001113455555555541    1    1357777888888888775544433322                13556


Q ss_pred             HHHHhcCCCCccchhHHHHHHHHhhcCC
Q 037562          454 RLVELLGHSSSSVLTPALRTIRNIVKGD  481 (670)
Q Consensus       454 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~  481 (670)
                      .|++++.+..+.++..+...+..+|..+
T Consensus       312 rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  312 RLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            7888888877888888888888887643

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.57  E-value=0.00012  Score=51.21  Aligned_cols=55  Identities=24%  Similarity=0.552  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562          507 ESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA  562 (670)
Q Consensus       507 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  562 (670)
                      +.+|..|+++|++++...+....... ..+++.|+.++.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999877777666644 46899999999999999999999999875

...

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=0.039  Score=61.37  Aligned_cols=238  Identities=13%  Similarity=0.025  Sum_probs=144.2

Q ss_pred             HHHHHhcccCChhHHHHHHHHHHhhhcCCCCC--ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 037562          370 PLLAELNENANLSMLRTATWTLFNFCRGKPQP--PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI  447 (670)
Q Consensus       370 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  447 (670)
                      .+.....++.+..+|..+...|..++...+..  .......+...+.+-+++.+...+...+.++..+....+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            34444545667899999999999999884222  2222355666777777788888999999999988866552222233


Q ss_pred             HcCCHHHHHHhcCCCCccchhHHHHHHHHhhc--CC-c---hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562          448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVK--GD-D---FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT  521 (670)
Q Consensus       448 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~-~---~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~  521 (670)
                      ..-+.+.++.+ +..+...|..|..+|-.++.  .. +   +.....+ ..++..+...+..+ ...+......++..+.
T Consensus       737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~l-nefl~~Isagl~gd-~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAIL-NEFLSIISAGLVGD-STRVVASDIVAITHIL  813 (1176)
T ss_pred             HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHH-HHHHHHHHhhhccc-HHHHHHHHHHHHHHHH
Confidence            32333444444 77777888888888888773  10 0   0001111 11233333333333 3333322244455444


Q ss_pred             cCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHH
Q 037562          522 CGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEG  601 (670)
Q Consensus       522 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~  601 (670)
                      .........-.-.+++..+.-.+.+++.++++.|+.++..++............ ..+++.+..+.++....++.++-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            321111111111234555556677889999999999999999875444433322 2378888888888889999999888


Q ss_pred             HHHHHHhhhh
Q 037562          602 LENILKVGVA  611 (670)
Q Consensus       602 l~~l~~~~~~  611 (670)
                      +..+++....
T Consensus       893 lekLirkfg~  902 (1176)
T KOG1248|consen  893 LEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHhCH
Confidence            8888775443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.56  E-value=0.016  Score=62.27  Aligned_cols=309  Identities=11%  Similarity=0.071  Sum_probs=181.8

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 037562          249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPI  328 (670)
Q Consensus       249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~  328 (670)
                      ++-|.....|.+++...++..  .....+.+. ++...+..+.-+..+-++..|++++...+.  ......+ ..+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence            455666668888888775541  111222222 344445555544447888899999888874  2222222 2367788


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh-cccCChhHHHHHHHHHHhhhcCCCCCChhhhh
Q 037562          329 FVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL-NENANLSMLRTATWTLFNFCRGKPQPPFNQVR  407 (670)
Q Consensus       329 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  407 (670)
                      +.++....+.++....+.+|+..+..+|+.... .+..+.|-.+.+. ..+.|+.+...+--++-.++... ...-....
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence            888888888999999999999999988875443 3444566555554 34567766666666666666532 12222346


Q ss_pred             hhHHHHHHhhccCC----hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc-CCCCccchhHHHHHHHHhhcCCc
Q 037562          408 PALPVLAQLIRSND----EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL-GHSSSSVLTPALRTIRNIVKGDD  482 (670)
Q Consensus       408 ~~i~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~  482 (670)
                      ..+|.++..++.++    .....-++..|..+.++.+.-....+-.-+++.+.++. .+++..+...+-.||..+.....
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            78999999998776    66677777777766654332222223334667777765 55667788889999988887654


Q ss_pred             hhhHHHHhCCChH--HHHHhhccCCchhHHHHHHHHHHHhhc----CCHHHHHHHHhcCChHHHH-HHhhcCChhHHHHH
Q 037562          483 FQTQCIINCGALP--YFLDMLVHNHEESIKKEVSWIISNITC----GNREQIQAVIDSGLIGPIV-NLLQNTEFDTKKEA  555 (670)
Q Consensus       483 ~~~~~l~~~~~~~--~L~~~l~~~~~~~v~~~a~~~L~~l~~----~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~~a  555 (670)
                      ++...--..++..  .+++.+..--+++.-..++..++.+..    +-.......+. .++..++ ++-..+...+...-
T Consensus       693 eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~ae~lsviQsL  771 (1005)
T KOG2274|consen  693 EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQAETLSVIQSL  771 (1005)
T ss_pred             HHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHhhhHHHHHHH
Confidence            4433222333333  333332211133344444545555433    21211111111 1222333 33335667888888


Q ss_pred             HHHHHHhcCCC
Q 037562          556 AWAISNATKFG  566 (670)
Q Consensus       556 ~~aL~~l~~~~  566 (670)
                      +.+++++....
T Consensus       772 i~VfahL~~t~  782 (1005)
T KOG2274|consen  772 IMVFAHLVHTD  782 (1005)
T ss_pred             HHHHHHHhhCC
Confidence            88888888763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.54  E-value=0.00013  Score=80.29  Aligned_cols=140  Identities=13%  Similarity=0.134  Sum_probs=88.3

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|.+.++ +++.+|..   .+++|+.|++++| +++.+|..  .+++|+.|++++|. ++.+  +..+  .++|+.|
T Consensus       200 ~L~~L~Ls~N-~LtsLP~~---l~~nL~~L~Ls~N-~LtsLP~~--l~~~L~~L~Ls~N~-L~~L--P~~l--~s~L~~L  267 (754)
T PRK15370        200 QITTLILDNN-ELKSLPEN---LQGNIKTLYANSN-QLTSIPAT--LPDTIQEMELSINR-ITEL--PERL--PSALQSL  267 (754)
T ss_pred             CCcEEEecCC-CCCcCChh---hccCCCEEECCCC-ccccCChh--hhccccEEECcCCc-cCcC--ChhH--hCCCCEE
Confidence            7999999876 68888753   3469999999987 47777654  34689999999984 5554  1222  3589999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCC-----------------cccCCCCccEEeEecC
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGN-----------------CAFTFPSLEILVVNYC  165 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----------------~~~~~~~L~~L~i~~C  165 (670)
                      ++++ .+++.++..          .+++|+.|.++++ +|+.++...                 .....++|+.|.+.+|
T Consensus       268 ~Ls~-N~L~~LP~~----------l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N  335 (754)
T PRK15370        268 DLFH-NKISCLPEN----------LPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN  335 (754)
T ss_pred             ECcC-CccCccccc----------cCCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC
Confidence            9974 466655421          1235556655554 333332110                 0012356777777776


Q ss_pred             CCccccccCCcCCCCccceeeeec
Q 037562          166 PNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       166 ~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                       ++..+|..+  .++|+.|++++.
T Consensus       336 -~Lt~LP~~l--~~sL~~L~Ls~N  356 (754)
T PRK15370        336 -ALTSLPASL--PPELQVLDVSKN  356 (754)
T ss_pred             -ccccCChhh--cCcccEEECCCC
Confidence             366677544  367787777654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.0041  Score=65.53  Aligned_cols=285  Identities=16%  Similarity=0.134  Sum_probs=156.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      ..+.+-..+.+.. .-+...|++++..+....+....     ..+..+-.++.++...+|..|.++|..++...|..   
T Consensus       246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---  316 (865)
T KOG1078|consen  246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---  316 (865)
T ss_pred             HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---
Confidence            3445555666666 78999999999998764433221     26777888888999999999999999999766542   


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND  441 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  441 (670)
                      +..+  -.-+-.++ .+.+..   -|..++..+..............-++..+.=+.++..-+...++.+++..-   +.
T Consensus       317 v~~c--N~elE~lI-td~Nrs---Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p~  387 (865)
T KOG1078|consen  317 VTVC--NLDLESLI-TDSNRS---IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---PR  387 (865)
T ss_pred             cccc--chhHHhhh-cccccc---hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---cH
Confidence            1111  11122222 222222   233333333332211112222222222222222233334444444444432   21


Q ss_pred             HHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh
Q 037562          442 KVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI  520 (670)
Q Consensus       442 ~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l  520 (670)
                      .     ..+.+..|..+|.. +.-+.+.....++..+...+++...     .++..|...+.+.   +...-+...+.-+
T Consensus       388 k-----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlL  454 (865)
T KOG1078|consen  388 K-----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLL  454 (865)
T ss_pred             H-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHH
Confidence            1     12445556666655 3446777778888777776655433     3566677777655   4455566666666


Q ss_pred             hcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHH
Q 037562          521 TCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE  600 (670)
Q Consensus       521 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  600 (670)
                      ....|...   .....+.......--++..+|..|..++.++... ++..     ...+...|.+.+.+.|.++|..|.-
T Consensus       455 G~EgP~a~---~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~-~~~l-----~~sI~vllkRc~~D~DdevRdrAtf  525 (865)
T KOG1078|consen  455 GKEGPKAP---NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ-DVVL-----LPSILVLLKRCLNDSDDEVRDRATF  525 (865)
T ss_pred             hccCCCCC---CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-CCCc-----cccHHHHHHHHhcCchHHHHHHHHH
Confidence            54222100   1112333344444445778888888888888732 2221     1224556777778888888888877


Q ss_pred             HHHHHH
Q 037562          601 GLENIL  606 (670)
Q Consensus       601 ~l~~l~  606 (670)
                      ++..+-
T Consensus       526 ~l~~l~  531 (865)
T KOG1078|consen  526 YLKNLE  531 (865)
T ss_pred             HHHHhh
Confidence            777655

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.0094  Score=62.96  Aligned_cols=284  Identities=11%  Similarity=0.135  Sum_probs=172.0

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 037562          241 PAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVV  320 (670)
Q Consensus       241 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  320 (670)
                      +.+=..+.+....+..+|++++..+....    .+.+..  .+..+--+++++. +-+|..|.++|..+|...|....  
T Consensus       248 ~fl~s~l~~K~emV~~EaArai~~l~~~~----~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~--  318 (865)
T KOG1078|consen  248 PFLESCLRHKSEMVIYEAARAIVSLPNTN----SRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVT--  318 (865)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccccC----Hhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCcccc--
Confidence            33444556778889999999998875432    122211  5667777888888 89999999999999985544221  


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC
Q 037562          321 IDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ  400 (670)
Q Consensus       321 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~  400 (670)
                         ..=.-+-.++.+.+..+...|+.+|..-  +.....+.+     +..+...+ .+-+.+.+..+..++..+|...|.
T Consensus       319 ---~cN~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rL-----m~qI~~fv-~disDeFKivvvdai~sLc~~fp~  387 (865)
T KOG1078|consen  319 ---VCNLDLESLITDSNRSIATLAITTLLKT--GTESSVDRL-----MKQISSFV-SDISDEFKIVVVDAIRSLCLKFPR  387 (865)
T ss_pred             ---ccchhHHhhhcccccchhHHHHHHHHHh--cchhHHHHH-----HHHHHHHH-HhccccceEEeHHHHHHHHhhccH
Confidence               1223455566677777766666665543  333333332     22222333 222223333334444444443322


Q ss_pred             CChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562          401 PPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK  479 (670)
Q Consensus       401 ~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  479 (670)
                      .    ..+.++.|..+|.. +.-+...+...++..+....++...     .++..|..++.+.  +...-+.+++.-+..
T Consensus       388 k----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~  456 (865)
T KOG1078|consen  388 K----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGK  456 (865)
T ss_pred             H----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence            1    24455666666664 3466777777888777765444333     3345555555443  345556666666655


Q ss_pred             CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHH
Q 037562          480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAI  559 (670)
Q Consensus       480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  559 (670)
                      ..+..   ......+..+.....-. +..+|..|..++.++..+++.     ....+...|.+++.+.|.++|..|..++
T Consensus       457 EgP~a---~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l  527 (865)
T KOG1078|consen  457 EGPKA---PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYL  527 (865)
T ss_pred             cCCCC---CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHH
Confidence            43321   11234555666665556 778999999999999865443     2334566778888899999999999999


Q ss_pred             HHhcC
Q 037562          560 SNATK  564 (670)
Q Consensus       560 ~~l~~  564 (670)
                      .++..
T Consensus       528 ~~l~~  532 (865)
T KOG1078|consen  528 KNLEE  532 (865)
T ss_pred             HHhhh
Confidence            98874

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.50  E-value=0.16  Score=55.07  Aligned_cols=168  Identities=16%  Similarity=0.174  Sum_probs=126.2

Q ss_pred             hcCCChHHHHHHHHH-HHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 037562          247 VWSDDNSLQLEATTL-FINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGA  325 (670)
Q Consensus       247 l~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  325 (670)
                      +.+.+...+..|++. +.+|..++  + .     ....+.+++.+.+.+ .+++...-..+.+++...|+..-.     +
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~--d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----a   93 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGE--D-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----A   93 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCC--C-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----H
Confidence            556667778888775 55666653  2 1     124677788888777 899999999999999877743322     4


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhh
Q 037562          326 VPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ  405 (670)
Q Consensus       326 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  405 (670)
                      ++.+.+=++++++.+|..|+++++.+=  .++.-.     .+++++.+++ .++++.||+.|+.++.++-+.++  ....
T Consensus        94 vNti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~--~l~~  163 (757)
T COG5096          94 VNTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDK--DLYH  163 (757)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCH--hhhh
Confidence            678889999999999999999999872  222211     2477888888 88899999999999999987642  2233


Q ss_pred             hhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562          406 VRPALPVLAQLIRSNDEEVLTDACWALSYLSDG  438 (670)
Q Consensus       406 ~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~  438 (670)
                      ..|.+..+..++.+.|+.+..+|+.++..+-..
T Consensus       164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         164 ELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            356777788888899999999999999988643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.41  E-value=0.00031  Score=49.12  Aligned_cols=55  Identities=35%  Similarity=0.623  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 037562          296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNV  351 (670)
Q Consensus       296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  351 (670)
                      +.+|..|+++|++++...++...... ..+++.|+.+|.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            47899999999999876666665544 47899999999999999999999999986

...

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.39  E-value=0.22  Score=57.09  Aligned_cols=143  Identities=12%  Similarity=0.074  Sum_probs=96.6

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV  319 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  319 (670)
                      +..++..+..+...++..|+++|..++..+..-.....++.|    +..-+.+.. ..||++|+..++......++....
T Consensus       818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~q  892 (1692)
T KOG1020|consen  818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSS-ASVREAALDLVGRFVLSIPELIFQ  892 (1692)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccch-hHHHHHHHHHHhhhhhccHHHHHH
Confidence            566677777778899999999999998764221122222332    233344555 799999999999887766666555


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--cCChhHHHHHHHHHHhhhcC
Q 037562          320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--NANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~--~~~~~~~~~a~~~L~~l~~~  397 (670)
                      +.     ..+..-+.+....||..++..+..+|...|.+-..      .....+++..  +....++.-+..++.++-..
T Consensus       893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~  961 (1692)
T KOG1020|consen  893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT  961 (1692)
T ss_pred             HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence            44     35666667788999999999999999887765332      2333344433  23334777888888877655


Q ss_pred             C
Q 037562          398 K  398 (670)
Q Consensus       398 ~  398 (670)
                      +
T Consensus       962 p  962 (1692)
T KOG1020|consen  962 P  962 (1692)
T ss_pred             C
Confidence            5

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.38  E-value=7.4e-06  Score=79.44  Aligned_cols=90  Identities=17%  Similarity=0.267  Sum_probs=66.1

Q ss_pred             cccEEEeccCcCccccccc-ccccCCCCcEEEEecCCCCccccC--CCccccccceeeecccccccccccchhhhccccc
Q 037562           23 EVKISEAYNCYRLENILIE-ESSVMNNLVILCVHCCDHLINLVP--SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      .|+.|.+++|....+-+.. ....+|++++|.+.+|.+++....  -...+++|++|.+..|..+++.........+|+|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            7899999999876654321 236789999999999987754321  1234688999999999988876433345678999


Q ss_pred             ceeccccccccce
Q 037562          100 RYMEIESCDKITE  112 (670)
Q Consensus       100 ~~L~i~~c~~l~~  112 (670)
                      ++|.++.|+.+..
T Consensus       219 ~~lNlSwc~qi~~  231 (483)
T KOG4341|consen  219 KYLNLSWCPQISG  231 (483)
T ss_pred             HHhhhccCchhhc
Confidence            9999999987754

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.38  E-value=0.001  Score=52.29  Aligned_cols=68  Identities=13%  Similarity=0.304  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 037562          298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ  365 (670)
Q Consensus       298 v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  365 (670)
                      .+...++++++++..++...+.+.+.|+++.++...  ...+|-+++.|++++.|++.++++.++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            356788999999999999999999999999999964  45889999999999999999999988877653

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.34  E-value=8.4e-05  Score=83.14  Aligned_cols=79  Identities=15%  Similarity=0.165  Sum_probs=57.4

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      .|+.|++++|.++..+|.. .+.+-+|+.|++++.. +..+|.+.+.|..|.+|++.....+...  +.....+++|++|
T Consensus       572 ~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVL  647 (889)
T ss_pred             ceEEEECCCCCccCcCChH-HhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccc--cchhhhcccccEE
Confidence            8888999988888888875 4678888888887764 6677877777778888888777666554  2333346666666


Q ss_pred             ccc
Q 037562          103 EIE  105 (670)
Q Consensus       103 ~i~  105 (670)
                      .+.
T Consensus       648 ~l~  650 (889)
T KOG4658|consen  648 RLP  650 (889)
T ss_pred             Eee
Confidence            554

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.094  Score=57.34  Aligned_cols=341  Identities=13%  Similarity=0.126  Sum_probs=184.9

Q ss_pred             hHHHHHHHHHHHHHhcCC-CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 037562          252 NSLQLEATTLFINLLSFD-RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV  330 (670)
Q Consensus       252 ~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~  330 (670)
                      +--..-|++.++.+++.- .....+...+.=+++.+...++++- -..|..|||+++.++..+-....  .-..++....
T Consensus       432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~--~l~~ale~t~  508 (1010)
T KOG1991|consen  432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPN--NLSEALELTH  508 (1010)
T ss_pred             hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChH--HHHHHHHHHH
Confidence            344456666666655321 1333344445546667777788888 69999999999999952322222  2223456666


Q ss_pred             HhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhc--CChHHHHHHhcccCChhHHHHHHHH-HHhhhcCCCCCChhhh
Q 037562          331 KLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ--GALIPLLAELNENANLSMLRTATWT-LFNFCRGKPQPPFNQV  406 (670)
Q Consensus       331 ~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~Ll~~l~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~  406 (670)
                      +.|. +.+-.|+-.|+-+|..+..+.+.....+...  +.+..++.+. +..+.+.....+.. +..++..-..-.....
T Consensus       509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            6666 7888899999999999887766543433321  1344455555 33333333333332 3334433222233334


Q ss_pred             hhhHHHHHHhhcc---C---ChhHHHHHHHHHHHhc------cCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562          407 RPALPVLAQLIRS---N---DEEVLTDACWALSYLS------DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI  474 (670)
Q Consensus       407 ~~~i~~L~~lL~~---~---~~~v~~~al~~L~~l~------~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L  474 (670)
                      ........++++.   .   +.+-...|.++|..+.      ...+...+ -++.-+++.+-..+++.-.++-+.++..+
T Consensus       588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~  666 (1010)
T KOG1991|consen  588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIV  666 (1010)
T ss_pred             HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5566666677763   1   2233344444444433      11121111 22234556666667776667888888888


Q ss_pred             HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcC-----ChHHHHHHhhcC-
Q 037562          475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSG-----LIGPIVNLLQNT-  547 (670)
Q Consensus       475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~-----~i~~L~~ll~~~-  547 (670)
                      ..++...++....+.  ++++.+.+.+... ....-....-++.|+.. +.+.    +.+.+     ++.....++.++ 
T Consensus       667 ~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~----~~s~~~y~~il~~i~~~~l~~e~  739 (1010)
T KOG1991|consen  667 SSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPS----LLSNPDYLQILLEIIKKVLTSEN  739 (1010)
T ss_pred             hhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchh----hhccchHHHHHHHHHHHHHcCCC
Confidence            887765544433333  4677788888877 67777788888888765 3222    12111     222333344442 


Q ss_pred             -ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc----c--CCChHHHHHHHHHHHHHHHhhh
Q 037562          548 -EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL----L--CADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       548 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll----~--~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                       ...=...|+..+..+...+.. ....     .++.++++.    .  .++...+.-++..+.+-+.+.+
T Consensus       740 ~~D~d~~~a~kLle~iiL~~kg-~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP  803 (1010)
T KOG1991|consen  740 GEDSDCESACKLLEVIILNCKG-LLDQ-----YIPLFLELALSRLTREVETSELRVMLLEVVINALYYNP  803 (1010)
T ss_pred             CchHHHHHHHHHHHHHHHHhcC-cHhh-----HhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCc
Confidence             233344566666666543211 1111     344444332    2  3455666666666666555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.25  E-value=0.00077  Score=73.98  Aligned_cols=50  Identities=16%  Similarity=0.046  Sum_probs=25.8

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHC   81 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c   81 (670)
                      +|+.|.+.+. +++.+|.    .+++|++|+++++ +++.+|.   .+++|+.|.+.++
T Consensus       223 ~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~---lp~sL~~L~Ls~N  272 (788)
T PRK15387        223 HITTLVIPDN-NLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN  272 (788)
T ss_pred             CCCEEEccCC-cCCCCCC----CCCCCcEEEecCC-ccCcccC---cccccceeeccCC
Confidence            4555555542 4554442    2456666666554 4555543   1345556655554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.22  E-value=3e-05  Score=65.72  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=90.6

Q ss_pred             cCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562           33 YRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE  112 (670)
Q Consensus        33 ~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  112 (670)
                      .+++.++.. ...+.+|+.|++++- .++.+|.+..++|+|++|.+. ..+|..+  +..++++|.|+.|++.+-. +.+
T Consensus        43 NKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~l--prgfgs~p~levldltynn-l~e  116 (264)
T KOG0617|consen   43 NKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNIL--PRGFGSFPALEVLDLTYNN-LNE  116 (264)
T ss_pred             CceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcC--ccccCCCchhhhhhccccc-ccc
Confidence            345555544 356778888888664 577888888888999888875 4455544  3557788999998886532 211


Q ss_pred             eccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562          113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      -      .-+.....+..|+.|++.+ ..++.++.  ....+++|+.|.+++- .|-++|..+..++.|++|+|.+
T Consensus       117 ~------~lpgnff~m~tlralyl~d-ndfe~lp~--dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  117 N------SLPGNFFYMTTLRALYLGD-NDFEILPP--DVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             c------cCCcchhHHHHHHHHHhcC-CCcccCCh--hhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc
Confidence            1      0011122345566666654 23444444  3556788888888874 4567898888888899888743

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.21  E-value=0.00094  Score=43.28  Aligned_cols=39  Identities=38%  Similarity=0.722  Sum_probs=35.9

Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 037562          314 SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA  352 (670)
Q Consensus       314 ~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  352 (670)
                      ++.+..+++.|+++.|++++.+++++++..|+++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347788899999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.21  E-value=0.13  Score=53.51  Aligned_cols=301  Identities=14%  Similarity=0.095  Sum_probs=168.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCc----HHHHHHcCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHHcCCChhhH-HH
Q 037562          251 DNSLQLEATTLFINLLSFDRSPP----IDEVIQSGVVPRFVEFLMRQ----D--YPQLQFKAAWALTNIASGTSENT-KV  319 (670)
Q Consensus       251 ~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~g~l~~L~~ll~~~----~--~~~v~~~a~~~L~~l~~~~~~~~-~~  319 (670)
                      +.+.....+..+..+........    .....+..+++.+.++....    .  ++.+-..+..++..+...-+... +.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45666677777777755432222    22333444777777765322    1  14566666677666665333333 33


Q ss_pred             HHhCCChHHHHH-----hhC-CC------CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHH
Q 037562          320 VIDHGAVPIFVK-----LLA-SP------SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTA  387 (670)
Q Consensus       320 i~~~~~i~~L~~-----lL~-~~------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a  387 (670)
                      +++ .+...+..     -+. ..      ......-...+++.+-   ++..-. .....+..++.......++..+..+
T Consensus       136 ~~~-~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~  210 (415)
T PF12460_consen  136 ILD-ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLR---KDVSLP-DLEELLQSLLNLALSSEDEFSRLAA  210 (415)
T ss_pred             HHH-HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCC---cccCcc-CHHHHHHHHHHHHHcCCChHHHHHH
Confidence            321 22222220     000 01      1111112223333332   221100 0111466777777677777888888


Q ss_pred             HHHHHhhhcCCCCCChhhhhhhHHHHHHhh-ccCChhHHHH----HHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC
Q 037562          388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLI-RSNDEEVLTD----ACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS  462 (670)
Q Consensus       388 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~----al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  462 (670)
                      +.+++.+...-+...  .....+..+...+ ...+...+..    ..|+...+.........     .++..++.++.+ 
T Consensus       211 ~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~-  282 (415)
T PF12460_consen  211 LQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS-  282 (415)
T ss_pred             HHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC-
Confidence            888888886632222  3344555555444 2233333333    34444444322222222     345667788877 


Q ss_pred             CccchhHHHHHHHHhhcCCch--------hhHHHHhCC----ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHH
Q 037562          463 SSSVLTPALRTIRNIVKGDDF--------QTQCIINCG----ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA  530 (670)
Q Consensus       463 ~~~v~~~a~~~L~~l~~~~~~--------~~~~l~~~~----~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  530 (670)
                       +++...|+..++-+....+.        .++.+.+..    .+|.+++..+.. +.+.+..-..+++++..+-|...-.
T Consensus       283 -~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl~  360 (415)
T PF12460_consen  283 -PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVLL  360 (415)
T ss_pred             -hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHHH
Confidence             56788888988888875222        223333333    466666667766 6668888889999998876654432


Q ss_pred             HHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562          531 VIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG  566 (670)
Q Consensus       531 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  566 (670)
                      ---..++|.+++.+..++.+++..+..+|..+....
T Consensus       361 ~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  361 PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            222458999999999999999999999999998863

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.21  E-value=0.00042  Score=49.71  Aligned_cols=57  Identities=25%  Similarity=0.363  Sum_probs=25.0

Q ss_pred             CCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccc
Q 037562           48 NLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC  107 (670)
Q Consensus        48 ~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  107 (670)
                      +|++|++++| ++..+++. +..+++|++|+|+++ +++.+ ++..+..+++|++|+++++
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEE-ETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            4445555544 34444432 233455555555522 33333 1223344555555555444

...

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=0.012  Score=62.63  Aligned_cols=240  Identities=13%  Similarity=0.049  Sum_probs=157.5

Q ss_pred             chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh-hhcCCCCCChhhhhhhHHHHHHhhccCC-hhHHHHHHHHHH
Q 037562          356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN-FCRGKPQPPFNQVRPALPVLAQLIRSND-EEVLTDACWALS  433 (670)
Q Consensus       356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~al~~L~  433 (670)
                      ..-+...++.|+...|+++. ....+..+..+..+|.. +...     .......++.+...++... ..-...++.++.
T Consensus       494 K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f~-----~~~~~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  494 KYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDFP-----GERSYEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             HHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCCC-----CCchhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            34455667888999999998 44445666677777772 1111     1112334444444444332 222345788899


Q ss_pred             HhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh-CCChHHHHHhhccCCchhHHHH
Q 037562          434 YLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIIN-CGALPYFLDMLVHNHEESIKKE  512 (670)
Q Consensus       434 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~~v~~~  512 (670)
                      |++..++...+.+.....++.+-.++..+++-.+..++..+.||..+..-....+++ ....+.....+... +.....+
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA  646 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELA  646 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhh
Confidence            999877766777888777788888888889999999999999999877666666666 34555555566555 7777777


Q ss_pred             HHHHHHHhhcCCHHHHH-HHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC
Q 037562          513 VSWIISNITCGNREQIQ-AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD  591 (670)
Q Consensus       513 a~~~L~~l~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  591 (670)
                      ++.++..++........ ..--......++.++.+++++++......+.++... ..+....+.....++.+...-....
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhccchHHHHHHHHHHhhh
Confidence            77777767664444443 222345678888999999999999999999995543 5566666666555555555544433


Q ss_pred             hHHHHHHHHHHH
Q 037562          592 PKIVTVCLEGLE  603 (670)
Q Consensus       592 ~~v~~~a~~~l~  603 (670)
                      ...+..+..+|.
T Consensus       726 a~~~~~~~~~l~  737 (748)
T KOG4151|consen  726 APKREDAAPCLS  737 (748)
T ss_pred             hhhhhhhhhHHH
Confidence            334444444443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.19  E-value=0.13  Score=50.94  Aligned_cols=200  Identities=11%  Similarity=0.085  Sum_probs=142.5

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH-----HHHHHHc--CCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562          407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK-----VQAVIEA--GVYPRLVELLGHSSSSVLTPALRTIRNIVK  479 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  479 (670)
                      .+.+..|+..|..-+-+.+..+..++.++.....+.     ...+...  .++..++..-  +++++...+-..|..++.
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence            567888888888889999999999999988553222     2222221  2333444333  355677777777777776


Q ss_pred             CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcC---ChHHHHHHhhcCChhHHHHHH
Q 037562          480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSG---LIGPIVNLLQNTEFDTKKEAA  556 (670)
Q Consensus       480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~~a~  556 (670)
                      . +...+.+.....+..+.+.++.+ +.++...|..++..+....+.....++..+   ++.....++.+++.-+++.++
T Consensus       153 ~-e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  153 H-ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             S-HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             h-HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence            4 45566777888888899999999 999999999999998776677666666544   467777888899999999999


Q ss_pred             HHHHHhcCCCCH--HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562          557 WAISNATKFGTH--EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       557 ~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      ..|+.+...-..  -..+++.+..-+..++.++++++..++..|..++.-++..+.
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~  286 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN  286 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence            999999873211  123444455568889999999999999999999987776543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.16  E-value=0.044  Score=57.46  Aligned_cols=129  Identities=15%  Similarity=0.137  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC
Q 037562          383 MLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS  462 (670)
Q Consensus       383 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  462 (670)
                      +.+.++.++..+-..++  ....+.+.+-.+++...+++..||..++..++.+.......-..+++ ++...+..-+.+.
T Consensus        62 Il~fla~fv~sl~q~d~--e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr  138 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLDK--EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR  138 (892)
T ss_pred             HHHHHHHHHHhhhccCc--hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc
Confidence            33444444444443322  22355777778888888899999999999999998743333333333 7778888888899


Q ss_pred             CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          463 SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       463 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                      .+.||.+|+.+|+.+-....+.     +..+...+..+++++++++||+.|...+.+
T Consensus       139 ep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  139 EPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             CchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            9999999999999986422111     124677888999988899999987655543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.15  E-value=0.12  Score=55.97  Aligned_cols=229  Identities=15%  Similarity=0.140  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 037562          296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE  374 (670)
Q Consensus       296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~  374 (670)
                      |..-..|.+++...+.........+-  -++...+..+ .+..+.++..|+++++..++... +...  ..+++..++++
T Consensus       464 P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~~--~p~ild~L~ql  538 (1005)
T KOG2274|consen  464 PFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLSL--QPMILDGLLQL  538 (1005)
T ss_pred             HHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-cccc--chHHHHHHHHH
Confidence            67777888888877763322222211  1233334433 34667788888888888873221 1111  12345566666


Q ss_pred             hcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCH
Q 037562          375 LNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR--SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVY  452 (670)
Q Consensus       375 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i  452 (670)
                      . ...+.++......+|+..+..+|.......+.+.|.+..++.  ++|+.+...+-.++-.++.... ... -.....+
T Consensus       539 a-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g-~m~e~~i  615 (1005)
T KOG2274|consen  539 A-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG-PMQERLI  615 (1005)
T ss_pred             c-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-chHHHHH
Confidence            6 556678888899999999999877777777778888776654  5678887777777777765321 122 2233688


Q ss_pred             HHHHHhcCCCC----ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHH
Q 037562          453 PRLVELLGHSS----SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI  528 (670)
Q Consensus       453 ~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~  528 (670)
                      |.++..|+.+.    ......|+.+|..+.++.+......+-.-++|++.+..-+..+.+....+..+++.+...+.++.
T Consensus       616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~  695 (1005)
T KOG2274|consen  616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQL  695 (1005)
T ss_pred             HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHH
Confidence            99999998876    45667788888888877665444444445788888887665588899999999999987655554


Q ss_pred             HHHH
Q 037562          529 QAVI  532 (670)
Q Consensus       529 ~~l~  532 (670)
                      ..--
T Consensus       696 ~t~~  699 (1005)
T KOG2274|consen  696 LTWH  699 (1005)
T ss_pred             Hhhc
Confidence            4333

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.22  Score=50.32  Aligned_cols=257  Identities=11%  Similarity=0.050  Sum_probs=142.9

Q ss_pred             ccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH
Q 037562          377 ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL  455 (670)
Q Consensus       377 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L  455 (670)
                      .+++..++..|+..|.|.+...|..........+..++.-|-+ .+.+|+-.++.+|..+........-.-+--.+.-.+
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl  347 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL  347 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence            4456678889999999999987666666666677777666654 468899999988887764322111101111344456


Q ss_pred             HHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh---CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 037562          456 VELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIIN---CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI  532 (670)
Q Consensus       456 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  532 (670)
                      ..+..+.+++.|..|...++.++.......+.++.   .+....++-.+++. ++.+- .||......+..+ -.++.+ 
T Consensus       348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~-~p~va-~ACr~~~~~c~p~-l~rke~-  423 (533)
T KOG2032|consen  348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDP-NPYVA-RACRSELRTCYPN-LVRKEL-  423 (533)
T ss_pred             HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCC-ChHHH-HHHHHHHHhcCch-hHHHHH-
Confidence            67778899999999999999887644333332221   12334445555666 55544 4566665554421 111111 


Q ss_pred             hcCChHHHHHHhhcCCh-hHHH-HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562          533 DSGLIGPIVNLLQNTEF-DTKK-EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       533 ~~~~i~~L~~ll~~~~~-~v~~-~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                       .++++...    +.+. ..+. ..-| ...+... .++...++..+     ..-++++.-+.++..+...-.+....-.
T Consensus       424 -~~~~q~~l----d~~~~~~q~Fyn~~-c~~L~~i-~~d~l~~~~t~-----~~~~f~sswe~vr~aavl~t~~~vd~l~  491 (533)
T KOG2032|consen  424 -YHLFQESL----DTDMARFQAFYNQW-CIQLNHI-HPDILMLLLTE-----DQHIFSSSWEQVREAAVLKTTRSVDSLV  491 (533)
T ss_pred             -HHHHhhhh----HHhHHHHHHHHHHH-HHHHhhh-CHHHHHHHHHh-----chhheecchHHHHHHHHHHHHHHHHHhH
Confidence             11222222    1111 1111 1111 1112221 33433332222     2224455555666666555555443322


Q ss_pred             hhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          611 AEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      .            .++...........+..|...+-+++++.|.++++...
T Consensus       492 ~------------~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  492 R------------AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             H------------HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            2            12344445555777889999999999999999988653

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.13  E-value=0.47  Score=53.22  Aligned_cols=134  Identities=10%  Similarity=0.150  Sum_probs=99.3

Q ss_pred             hHHHHHhhccC---CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHH
Q 037562          494 LPYFLDMLVHN---HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHE  569 (670)
Q Consensus       494 ~~~L~~~l~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~  569 (670)
                      .|.++...++.   .+|+++..|.-+++.+..-+.....     .-+|.|+.++. ++++.+|.+++-+++.++... |.
T Consensus       921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f-pn  994 (1251)
T KOG0414|consen  921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF-PN  994 (1251)
T ss_pred             HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc-cc
Confidence            44455555322   1788999999999998764444221     24688899888 889999999999999998852 22


Q ss_pred             HHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHH
Q 037562          570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGI  649 (670)
Q Consensus       570 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v  649 (670)
                      ....     .-+.|.+-+.++++.||+.|+-.+..++-                  ..++.--|-+.....+..++++++
T Consensus       995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLIL------------------ndmiKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen  995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLIL------------------NDMIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred             ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHH------------------hhhhHhcccHHHHHHHhcCCcHHH
Confidence            2222     45678888899999999999999999884                  345556666777777888899999


Q ss_pred             HHHHHHH
Q 037562          650 SEKAVEI  656 (670)
Q Consensus       650 ~~~a~~~  656 (670)
                      +..|...
T Consensus      1052 sdlAk~F 1058 (1251)
T KOG0414|consen 1052 SDLAKSF 1058 (1251)
T ss_pred             HHHHHHH
Confidence            9888843

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.064  Score=59.76  Aligned_cols=241  Identities=12%  Similarity=0.122  Sum_probs=150.8

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC---CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHH
Q 037562          287 VEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH---GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP-RCRDLV  362 (670)
Q Consensus       287 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~---~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i  362 (670)
                      .....+.+...+|..+.++|..++.. +.. ..+...   .+...+.+-+++.+...+...+.+|..+....+ +..+.+
T Consensus       659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  659 DPEFENSSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hHHhhccccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            34444443379999999999999984 222 222211   233445555556667777788888888775444 333333


Q ss_pred             HhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc--CC----CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562          363 LSQGALIPLLAELNENANLSMLRTATWTLFNFCR--GK----PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS  436 (670)
Q Consensus       363 ~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~--~~----~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~  436 (670)
                      ..  .++.++-.+ +..+...++++..+|..++.  ..    ..+....+...++.+...+-.+...+....+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  344444444 66777888899888888872  11    12224455666776666655554444444355555555


Q ss_pred             cCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562          437 DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWI  516 (670)
Q Consensus       437 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~  516 (670)
                      .........-.-.++++.+..+|.+++.+++..|+..+..++...++..-.-....+++.+..++++. ...+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            33222222222236778888889999999999999999999987765443333344788888888777 78888888888


Q ss_pred             HHHhhc-CCHHHHHHHHh
Q 037562          517 ISNITC-GNREQIQAVID  533 (670)
Q Consensus       517 L~~l~~-~~~~~~~~l~~  533 (670)
                      +-.++. ...+..+.+..
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888776 23444444443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.10  E-value=0.043  Score=57.47  Aligned_cols=294  Identities=13%  Similarity=0.124  Sum_probs=147.4

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 037562          285 RFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLS  364 (670)
Q Consensus       285 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  364 (670)
                      .++...+ .+ ...+..|+..+.......|+..+..     +..++++..+++..||..|+..|..+|.++++....+  
T Consensus        27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--   97 (556)
T PF05918_consen   27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--   97 (556)
T ss_dssp             HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred             HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence            4455444 35 6899999999999999888877654     6789999999999999999999999999887765554  


Q ss_pred             cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc---cCChhHHHHHHHHHHHhc-cCCh
Q 037562          365 QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR---SNDEEVLTDACWALSYLS-DGTN  440 (670)
Q Consensus       365 ~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~al~~L~~l~-~~~~  440 (670)
                         ...|.++| ...++.-...+-.+|..+...++       .+.+..+...+.   ++++.+|+.++..|..-. .-..
T Consensus        98 ---aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~  166 (556)
T PF05918_consen   98 ---ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP  166 (556)
T ss_dssp             ---HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred             ---HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence               56788888 56666556666666666665432       334444444443   578889999988775432 1111


Q ss_pred             HHHH--HHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC----CchhhHHHHhCCChHHHHHhh------ccCCchh
Q 037562          441 DKVQ--AVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG----DDFQTQCIINCGALPYFLDML------VHNHEES  508 (670)
Q Consensus       441 ~~~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~~~~~~L~~~l------~~~~~~~  508 (670)
                      +...  .-.+.-++..+.+.|.+-...--.....+|..+-..    .....+.     +++.+.+..      ... +++
T Consensus       167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~s-D~e  240 (556)
T PF05918_consen  167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPS-DPE  240 (556)
T ss_dssp             TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SS-SHH
T ss_pred             HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCc-CHH
Confidence            1111  112223445566667653222222333444444431    1222222     233333322      112 344


Q ss_pred             HHHHHHHHHHH----hhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH
Q 037562          509 IKKEVSWIISN----ITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKP  582 (670)
Q Consensus       509 v~~~a~~~L~~----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~  582 (670)
                      .......++..    +..  .+.....++.+ .++|.+-++    ..+.+...+.+++.++..........+++ -++..
T Consensus       241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~  314 (556)
T PF05918_consen  241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQL  314 (556)
T ss_dssp             HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHH
Confidence            33333333332    122  23444444444 477766555    45777788888888887654332333221 12233


Q ss_pred             HHhhc--cCCChH----HHHHHHHHHHHHHHhhh
Q 037562          583 LCDLL--LCADPK----IVTVCLEGLENILKVGV  610 (670)
Q Consensus       583 L~~ll--~~~~~~----v~~~a~~~l~~l~~~~~  610 (670)
                      |..++  ....++    .++..+.++..+....+
T Consensus       315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p  348 (556)
T PF05918_consen  315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP  348 (556)
T ss_dssp             HHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred             HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence            33333  122333    44555555565554433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.10  E-value=0.0035  Score=49.27  Aligned_cols=68  Identities=18%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHh
Q 037562          466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVID  533 (670)
Q Consensus       466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~  533 (670)
                      ++...+++|+|++..++.....+.+.|+++.+++...-+. +|-+++.|.+++.|++.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4677889999999999999999999999999999865432 8999999999999999998887765543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00055  Score=67.24  Aligned_cols=142  Identities=21%  Similarity=0.258  Sum_probs=84.2

Q ss_pred             ccCCCCcEEEEecCCCCccccCC--Cccccccceeeeccccc-ccccccchhhhcccccceeccccccccceeccccccc
Q 037562           44 SVMNNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKR-LKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVV  120 (670)
Q Consensus        44 ~~~~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~-l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~  120 (670)
                      ..+|+|+.|+++.-. |.....+  ...++.|+.|.+++|.- -+++  ...+..+|+|+.|++.+-..+-   .     
T Consensus       169 eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~~---~-----  237 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEIIL---I-----  237 (505)
T ss_pred             Hhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhcccccc---e-----
Confidence            457777777776532 2111111  23577888888888831 2222  1235578888888886653211   0     


Q ss_pred             cccccccccccccccccccccccccccCCcccCCCCccEEeEecCCC--ccccccC-----CcCCCCccceeeeeccCCc
Q 037562          121 AQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPN--MKIFSGG-----ELSTPNLHKVQLSRWDGEE  193 (670)
Q Consensus       121 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~--l~~~p~~-----~~~~~~L~~l~i~~~~~~~  193 (670)
                      ...+...+..|++|+|++-+.+ ++..+.....||.|..|.+..|.-  +. +|..     ...+|+|+.|.+++.+ ..
T Consensus       238 ~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~-~~d~~s~~kt~~f~kL~~L~i~~N~-I~  314 (505)
T KOG3207|consen  238 KATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIA-EPDVESLDKTHTFPKLEYLNISENN-IR  314 (505)
T ss_pred             ecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhc-CCCccchhhhcccccceeeecccCc-cc
Confidence            1122345778999999885544 444444567899999999987742  33 3433     2347999999885433 33


Q ss_pred             cceeec
Q 037562          194 HWIWVH  199 (670)
Q Consensus       194 ~~~~~~  199 (670)
                      +|=...
T Consensus       315 ~w~sl~  320 (505)
T KOG3207|consen  315 DWRSLN  320 (505)
T ss_pred             cccccc
Confidence            354333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.05  E-value=0.00085  Score=48.11  Aligned_cols=58  Identities=22%  Similarity=0.242  Sum_probs=49.1

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCK   82 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~   82 (670)
                      +|++|.+.+| +++.++......+++|++|+++++ .+..+++. +..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            6899999998 899998776788999999999955 57777764 4679999999999884

...

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.04  E-value=0.03  Score=50.43  Aligned_cols=93  Identities=20%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh
Q 037562          421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM  500 (670)
Q Consensus       421 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~  500 (670)
                      ++.+|.+++.+++-++...+....     ..++.+...|.++++.||..|+.++..|...+.-..+    ..++..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence            578999999999999876654443     5678999999999999999999999999875432222    2344777888


Q ss_pred             hccCCchhHHHHHHHHHHHhhcC
Q 037562          501 LVHNHEESIKKEVSWIISNITCG  523 (670)
Q Consensus       501 l~~~~~~~v~~~a~~~L~~l~~~  523 (670)
                      +.++ +++++..|..++..+...
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8888 999999999999999764

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.03  E-value=0.081  Score=52.38  Aligned_cols=205  Identities=11%  Similarity=0.073  Sum_probs=143.6

Q ss_pred             HHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh-----hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562          444 QAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ-----TQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS  518 (670)
Q Consensus       444 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~  518 (670)
                      +.++..+.+..++..|..-+.+.|..++.+.+++.......     ...+.. ..-+.+..++..-.++++.-.+...+.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence            44667799999999999999999999999999998765332     223332 223333333332225566666667777


Q ss_pred             HhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CCcHHHHhhccCCChHHH
Q 037562          519 NITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE---GCVKPLCDLLLCADPKIV  595 (670)
Q Consensus       519 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~  595 (670)
                      .++.. +...+.++....+..+.+..+.++.++...|..++..+... .+.....++..   ..+.....++.+++.-++
T Consensus       149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            76554 66777888888899999999999999999999999998776 44554444443   346678889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          596 TVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       596 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ..+++.|+.++.+..+..          .....+....-+..+-.|+.+++..++..|-.+..-+.
T Consensus       227 rqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV  282 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV  282 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence            999999999997655432          23445555556677788889999999999887766543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.02  E-value=0.023  Score=48.67  Aligned_cols=132  Identities=13%  Similarity=0.118  Sum_probs=102.3

Q ss_pred             HHHHHHcCCHHHHHHhcCCCCc------cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHH
Q 037562          443 VQAVIEAGVYPRLVELLGHSSS------SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSW  515 (670)
Q Consensus       443 ~~~~~~~~~i~~L~~lL~~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~  515 (670)
                      ...++..+++..|+.++.++..      ++...++.++..+..+.. .........++..++..++... +..+...|..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            3457778999999999988663      566667888888877542 2333556667888888887664 6889999999


Q ss_pred             HHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 037562          516 IISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLV  575 (670)
Q Consensus       516 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~  575 (670)
                      .|-++...++.....+.+.=-++.|+..++..+.+++.+|...+..+...+++..++.+.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            999998877765655555556999999999999999999999999998887666655433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=4.6e-05  Score=70.66  Aligned_cols=136  Identities=20%  Similarity=0.197  Sum_probs=77.6

Q ss_pred             CCCcEEEEecCCCCccccCC--Cccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562           47 NNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE  124 (670)
Q Consensus        47 ~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  124 (670)
                      .+|+.|+++.|+++..-.-.  ..++..|..|+|++|.--......-...--++|+.|+++||..--..   .  -...-
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~---s--h~~tL  308 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK---S--HLSTL  308 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh---h--HHHHH
Confidence            45666666666655432211  12355566666666633222210011122355666666666422100   0  00001


Q ss_pred             cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC---CcCCCCccceeeeecc
Q 037562          125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG---ELSTPNLHKVQLSRWD  190 (670)
Q Consensus       125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~---~~~~~~L~~l~i~~~~  190 (670)
                      ....|+|..|++++|-.|+.=+.. ..+.|+.|++|.++.|-.+.  |..   ..+.|+|.+|++.++-
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHhCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence            124789999999999988873332 45789999999999998754  432   3457999999886543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.99  E-value=9.9e-05  Score=75.45  Aligned_cols=163  Identities=19%  Similarity=0.209  Sum_probs=88.1

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCC-CCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCD-HLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~-~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|++|.+++-|= ...-......+++|+.|.+++-. -+..+|.+...+.||..++++ |.+|..+  |..+-.+++|+.
T Consensus       174 ~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~v--Pecly~l~~Lrr  249 (1255)
T KOG0444|consen  174 MLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIV--PECLYKLRNLRR  249 (1255)
T ss_pred             hhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcc--hHHHhhhhhhhe
Confidence            667776665541 11001011234455555555432 334566666667777777765 5555554  244556777777


Q ss_pred             eccccccccceeccc-cc--------------ccccccccccccccccccccc-ccccccccC-----------------
Q 037562          102 MEIESCDKITEIVLV-DD--------------VVAQDEVITFRELKELNLLQM-QNLISFCSG-----------------  148 (670)
Q Consensus       102 L~i~~c~~l~~~~~~-~~--------------~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~-----------------  148 (670)
                      |++++-. ++++-.. +.              ..-+.....+|+|+.|...+- -..+.++.|                 
T Consensus       250 LNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  250 LNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             eccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence            7776532 2222100 00              001122334566666554421 122222222                 


Q ss_pred             ----CcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeeccC
Q 037562          149 ----NCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWDG  191 (670)
Q Consensus       149 ----~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~~  191 (670)
                          .....|+.|++|.+. |..|.++|+.+..+|.|+.|++.+.++
T Consensus       329 ElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  329 ELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             ccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcC
Confidence                013457888888875 788889999998899999999976553

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.98  E-value=0.15  Score=50.22  Aligned_cols=195  Identities=13%  Similarity=0.099  Sum_probs=123.8

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH--HcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC--CchhhHH
Q 037562          412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI--EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG--DDFQTQC  487 (670)
Q Consensus       412 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~  487 (670)
                      ..+..+.......|..++..+.++...... ...+.  ...++..+.+.++.+..+-+..|+.+++-++-.  .......
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            344445556688999999988887744321 11111  124677788888887766677788888777654  2233444


Q ss_pred             HHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHH--Hhh-c---------CChhH
Q 037562          488 IINCGALPYFLDMLVHNH-EESIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVN--LLQ-N---------TEFDT  551 (670)
Q Consensus       488 l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~--ll~-~---------~~~~v  551 (670)
                      +++ ...+.|...+.++. ...+|..++.+|+-++.   ..++.....++  .+..+..  ..+ +         +++.+
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            554 47788888888763 34566666666666543   33443332222  2221111  112 1         13468


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          552 KKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       552 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      ...|+.+.+-+....+........+ ..++.|..+|++.+.+||.+|-.+|.-+++....
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            8888888888877655544444333 3689999999999999999999999988877654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.92  E-value=0.07  Score=52.59  Aligned_cols=191  Identities=20%  Similarity=0.200  Sum_probs=121.7

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--Chh
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVI--QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG--TSE  315 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~--~~~  315 (670)
                      +...+..+.......+..|+..+.++....  ...+.+.  ...++..+.+.++.+. .+-+..|+++++-++-.  ...
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~  121 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGE  121 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCc
Confidence            566777777667889999999999987652  2223222  2346778888888887 57777788888777653  223


Q ss_pred             hHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhC---CCchhHHHHHhcCChHHHHHH--hcc---------cC
Q 037562          316 NTKVVIDHGAVPIFVKLLASP--SVDVRKQTVWALGNVAG---DSPRCRDLVLSQGALIPLLAE--LNE---------NA  379 (670)
Q Consensus       316 ~~~~i~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~i~~Ll~~--l~~---------~~  379 (670)
                      ....+++ ...|.|.+.+.+.  ...+|..|+.+|+-++.   .++......++  .+..+...  ...         .+
T Consensus       122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~  198 (309)
T PF05004_consen  122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAED  198 (309)
T ss_pred             cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCC
Confidence            4445554 4678888888764  45677777777777652   22221111111  22222111  111         12


Q ss_pred             ChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562          380 NLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS  436 (670)
Q Consensus       380 ~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~  436 (670)
                      ++.+...|+.+.+-|...-+.. ........+|.+..+|+++|.+||..|-.+|+-+.
T Consensus       199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            3467777777777666554332 22334778999999999999999999998887764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.92  E-value=0.002  Score=70.82  Aligned_cols=141  Identities=16%  Similarity=0.067  Sum_probs=80.4

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      .-..|+++++ +|+.+|..   ..++|+.|.+.++ +++.+|..   +++|++|+++++ +|+.+.   .  ..++|++|
T Consensus       202 ~~~~LdLs~~-~LtsLP~~---l~~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP---~--lp~sL~~L  267 (788)
T PRK15387        202 GNAVLNVGES-GLTTLPDC---LPAHITTLVIPDN-NLTSLPAL---PPELRTLEVSGN-QLTSLP---V--LPPGLLEL  267 (788)
T ss_pred             CCcEEEcCCC-CCCcCCcc---hhcCCCEEEccCC-cCCCCCCC---CCCCcEEEecCC-ccCccc---C--ccccccee
Confidence            4556777777 78877753   2358999999874 57777643   589999999886 777762   1  24688888


Q ss_pred             ccccccccceecccc---------ccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc
Q 037562          103 EIESCDKITEIVLVD---------DVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG  173 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~  173 (670)
                      ++.++. ++.++...         ......-...+|+|+.|.+++. +++.++.     ..++|+.|.+.+| ++..+|.
T Consensus       268 ~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~-----lp~~L~~L~Ls~N-~L~~LP~  339 (788)
T PRK15387        268 SIFSNP-LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLPA-----LPSELCKLWAYNN-QLTSLPT  339 (788)
T ss_pred             eccCCc-hhhhhhchhhcCEEECcCCccccccccccccceeECCCC-ccccCCC-----CcccccccccccC-ccccccc
Confidence            887763 43332100         0000000012355666666554 4444322     1234566666554 3445553


Q ss_pred             CCcCCCCccceeeee
Q 037562          174 GELSTPNLHKVQLSR  188 (670)
Q Consensus       174 ~~~~~~~L~~l~i~~  188 (670)
                         ..++|+.|++++
T Consensus       340 ---lp~~Lq~LdLS~  351 (788)
T PRK15387        340 ---LPSGLQELSVSD  351 (788)
T ss_pred             ---cccccceEecCC
Confidence               124667776654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.91  E-value=0.029  Score=50.58  Aligned_cols=91  Identities=18%  Similarity=0.159  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC-hHHHHHH
Q 037562          296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGA-LIPLLAE  374 (670)
Q Consensus       296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~-i~~Ll~~  374 (670)
                      +.+|..++.+++.++...+...+     ..++.+...|+++++.+|..|+.+|..|...+..     .-.|. +..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence            78999999999999885554433     3478899999999999999999999999854321     11122 3677777


Q ss_pred             hcccCChhHHHHHHHHHHhhhcC
Q 037562          375 LNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       375 l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      + .+++++++..|..++..+...
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHh
Confidence            7 888999999999999999987

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.90  E-value=0.033  Score=47.78  Aligned_cols=126  Identities=16%  Similarity=0.107  Sum_probs=97.8

Q ss_pred             HHHHHhcCChHHHHHHhcccCC-----hhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHH
Q 037562          359 RDLVLSQGALIPLLAELNENAN-----LSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWA  431 (670)
Q Consensus       359 ~~~i~~~~~i~~Ll~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~  431 (670)
                      ...++..+++..|++.+.+...     .++...++.++..|.++.-..=.......+..++......  |..+...++..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            4567788899999999966553     4777888999999888752221223356777777777644  68999999999


Q ss_pred             HHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh
Q 037562          432 LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ  484 (670)
Q Consensus       432 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  484 (670)
                      |-+++.+++...+.+.+.=-++.++..|+.++.+++..|+..+..+-...++.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            99999988877777777677899999999999999999999888886655443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.88  E-value=0.0027  Score=41.07  Aligned_cols=39  Identities=46%  Similarity=0.683  Sum_probs=35.2

Q ss_pred             HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          526 EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       526 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                      +....+.+.|+++.|++++.+++.+++..|+++|.|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            466778899999999999999999999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.88  E-value=0.0093  Score=64.16  Aligned_cols=190  Identities=15%  Similarity=0.114  Sum_probs=131.1

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-------------HHHHHhcCChHHHHHHhcccCChhHHHHHHHHH
Q 037562          325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC-------------RDLVLSQGALIPLLAELNENANLSMLRTATWTL  391 (670)
Q Consensus       325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L  391 (670)
                      +-..++.+|++  +++-..++.++.-+..+.+..             |+.++ ...+|.+++... ..+...+.+-..+|
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L  891 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL  891 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence            34566777765  344555666666666555432             22222 245788888874 55566777888888


Q ss_pred             HhhhcCCCCCChh-hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCC---ccch
Q 037562          392 FNFCRGKPQPPFN-QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS---SSVL  467 (670)
Q Consensus       392 ~~l~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~  467 (670)
                      ++...+-|..... .....+|.|++.|.-+|..++..++.++.-+....+......++ -+++.+..+=.+.+   ..+|
T Consensus       892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence            8888765543222 23678899999999999999999999998877554443332332 46677776666654   4589


Q ss_pred             hHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh
Q 037562          468 TPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI  520 (670)
Q Consensus       468 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l  520 (670)
                      ..|+.++..+....|...-......++..|...|.+. ..-||++|+.+=.+.
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence            9999999999986665544455667889999999988 888999998765543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.85  E-value=0.0047  Score=48.67  Aligned_cols=91  Identities=15%  Similarity=0.159  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCC
Q 037562          384 LRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS  463 (670)
Q Consensus       384 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~  463 (670)
                      ++.++.+|+..+..-+.........+++.++..+.++|..||.+|+.+|.+++....+..-... ..++..+.+++.+.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCc
Confidence            4456666776665554444555588999999999999999999999999999865443332222 368888999999999


Q ss_pred             ccchhHHHHHHHH
Q 037562          464 SSVLTPALRTIRN  476 (670)
Q Consensus       464 ~~v~~~a~~~L~~  476 (670)
                      ++|+..| ..|-+
T Consensus        82 ~~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   82 ENVRSAA-ELLDR   93 (97)
T ss_pred             hhHHHHH-HHHHH
Confidence            9888776 34433

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.029  Score=60.10  Aligned_cols=227  Identities=11%  Similarity=0.096  Sum_probs=145.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV  362 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  362 (670)
                      ....+..+.++. +.++-++++-+..+.. ..+....+...+++...+..+++.++-+.-+|+..+..+|...|+     
T Consensus       729 ~qeai~sl~d~q-vpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----  801 (982)
T KOG4653|consen  729 LQEAISSLHDDQ-VPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----  801 (982)
T ss_pred             HHHHHHHhcCCc-ccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence            334455566666 7899999999999998 446667777789999999999999999999999999888855433     


Q ss_pred             HhcCChHHHHHHhccc---CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562          363 LSQGALIPLLAELNEN---ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       363 ~~~~~i~~Ll~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                         ..++-+...-.+.   ..++.+-.+..++.++...-..-.......++...++..+++|...|..++..+++++...
T Consensus       802 ---~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~  878 (982)
T KOG4653|consen  802 ---DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL  878 (982)
T ss_pred             ---hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence               3466666632121   1124444555677776665433333334566677778888888889999999999998543


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHH---hCCChHHHHHhhccCCchhHHHHHHH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDFQTQCII---NCGALPYFLDMLVHNHEESIKKEVSW  515 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~---~~~~~~~L~~~l~~~~~~~v~~~a~~  515 (670)
                      .......+. .++..++.+.+. ++..+|..|+..+..+-.+.....-.+.   .......+.+......+..++..|+.
T Consensus       879 a~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql  957 (982)
T KOG4653|consen  879 AFQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL  957 (982)
T ss_pred             hhhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            322222211 344555555544 5567899999999988776543322221   11233344444444435556666655


Q ss_pred             HHHHh
Q 037562          516 IISNI  520 (670)
Q Consensus       516 ~L~~l  520 (670)
                      ++-.+
T Consensus       958 ~leei  962 (982)
T KOG4653|consen  958 CLEEI  962 (982)
T ss_pred             HHHHH
Confidence            55443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.77  E-value=0.016  Score=61.71  Aligned_cols=241  Identities=13%  Similarity=0.053  Sum_probs=159.6

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHH
Q 037562          313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALG-NVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTL  391 (670)
Q Consensus       313 ~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L  391 (670)
                      ...-+...+..|+...|+.+...+.+.-+.....+|. .+......      ....++++.+.+.++..---...++.++
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            4455556678899999999988877777777777777 33221111      1124666666663333222233788899


Q ss_pred             HhhhcCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHH-cCCHHHHHHhcCCCCccchhH
Q 037562          392 FNFCRGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIE-AGVYPRLVELLGHSSSSVLTP  469 (670)
Q Consensus       392 ~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~  469 (670)
                      .||+..+........ .-.++.+-.++..+++..+..++.++.||.-++.-....+.+ ....+.....+...+.....+
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            999887744433333 455566677777889999999999999999776655555555 244555555566666667777


Q ss_pred             HHHHHHHhhcCCchhhH-HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC
Q 037562          470 ALRTIRNIVKGDDFQTQ-CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTE  548 (670)
Q Consensus       470 a~~~L~~l~~~~~~~~~-~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~  548 (670)
                      ++.++..++......+. ..-...+...+..++.+. +.+++......+.|+.....+....+.....++.+...-.-.-
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            77777766655544444 333456788899999999 9999999999999976666676767777667776666544333


Q ss_pred             hhHHHHHHHHHH
Q 037562          549 FDTKKEAAWAIS  560 (670)
Q Consensus       549 ~~v~~~a~~aL~  560 (670)
                      ...++.+..+|.
T Consensus       726 a~~~~~~~~~l~  737 (748)
T KOG4151|consen  726 APKREDAAPCLS  737 (748)
T ss_pred             hhhhhhhhhHHH
Confidence            344444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.73  E-value=0.00024  Score=71.49  Aligned_cols=161  Identities=14%  Similarity=0.038  Sum_probs=85.3

Q ss_pred             CccccEEEeccCcCccccccc---ccccCCCCcEEEEecCCCCc----cccCCCccc-cccceeeeccccccccccc---
Q 037562           21 GMEVKISEAYNCYRLENILIE---ESSVMNNLVILCVHCCDHLI----NLVPSSTSF-QNLTNLVVSHCKRLKIVLT---   89 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~---~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~-~~L~~L~i~~c~~l~~l~~---   89 (670)
                      ..+|+.|.+++|+--...+..   .... ++|++|++++|.--.    .+......+ ++|+.|++++|. +..-..   
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~  157 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEAL  157 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHH
Confidence            348999999888643222211   1122 559999998886221    111122345 788999999885 221000   


Q ss_pred             chhhhcccccceeccccccccceecccccccccccccccccccccccccccccccccc---CCcccCCCCccEEeEecCC
Q 037562           90 SSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCS---GNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus        90 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~C~  166 (670)
                      ...+..+++|++|++.+|. +..-   ...........+++|+.|.+++|. +.....   ......+|+|+.|++++|+
T Consensus       158 ~~~~~~~~~L~~L~l~~n~-l~~~---~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         158 AKALRANRDLKELNLANNG-IGDA---GIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHhCCCcCEEECcCCC-CchH---HHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            1234456788888888874 2110   000000112234688888888774 221110   0113356788888888875


Q ss_pred             Ccc-----ccccCCc-CCCCccceeeeec
Q 037562          167 NMK-----IFSGGEL-STPNLHKVQLSRW  189 (670)
Q Consensus       167 ~l~-----~~p~~~~-~~~~L~~l~i~~~  189 (670)
                       +.     .+..... ..++|++|+++++
T Consensus       233 -l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         233 -LTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             -CchHHHHHHHHHHhccCCCceEEEccCC
Confidence             22     1111110 2367888877654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.69  E-value=0.00098  Score=59.08  Aligned_cols=103  Identities=15%  Similarity=0.185  Sum_probs=35.5

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhh-hcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIA-KTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~-~~l~~L~~  101 (670)
                      .+++|++.++. ++.+-.. ...+.+|+.|+++++. +..+. ....+++|+.|.+++= +++++.  ..+ ..+|+|++
T Consensus        20 ~~~~L~L~~n~-I~~Ie~L-~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N-~I~~i~--~~l~~~lp~L~~   92 (175)
T PF14580_consen   20 KLRELNLRGNQ-ISTIENL-GATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNN-RISSIS--EGLDKNLPNLQE   92 (175)
T ss_dssp             -----------------S---TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-C--HHHHHH-TT--E
T ss_pred             ccccccccccc-cccccch-hhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCC-CCCccc--cchHHhCCcCCE
Confidence            67888888763 4433221 1257899999998875 55543 4556889999998754 555552  223 46899999


Q ss_pred             eccccc--cccceecccccccccccccccccccccccccccc
Q 037562          102 MEIESC--DKITEIVLVDDVVAQDEVITFRELKELNLLQMQN  141 (670)
Q Consensus       102 L~i~~c--~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  141 (670)
                      |++.+-  .++.++         .....+|+|+.|++.+-|=
T Consensus        93 L~L~~N~I~~l~~l---------~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   93 LYLSNNKISDLNEL---------EPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             EE-TTS---SCCCC---------GGGGG-TT--EEE-TT-GG
T ss_pred             EECcCCcCCChHHh---------HHHHcCCCcceeeccCCcc
Confidence            998753  222222         2335699999999998774

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.64  E-value=0.053  Score=50.46  Aligned_cols=222  Identities=11%  Similarity=0.113  Sum_probs=136.1

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHc-CCHHHHHH-------hcCCCCcc-----chhHHHHHHHHhhcCCchhhHH
Q 037562          421 DEEVLTDACWALSYLSDGTNDKVQAVIEA-GVYPRLVE-------LLGHSSSS-----VLTPALRTIRNIVKGDDFQTQC  487 (670)
Q Consensus       421 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~-------lL~~~~~~-----v~~~a~~~L~~l~~~~~~~~~~  487 (670)
                      +++.|+.|+.-|+.--+..++....+..+ |.+..+++       .+..+.-.     -..+|+..+-.+|. .++....
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            56778888888877766656655555554 55555433       23332211     12334455555566 5566777


Q ss_pred             HHhCCChHHHHHhhccCC----chhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562          488 IINCGALPYFLDMLVHNH----EESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA  562 (670)
Q Consensus       488 l~~~~~~~~L~~~l~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  562 (670)
                      ++++.+.-.|..+|+...    -+.+|-.+.++++.+.. .+++.+..+.+.+++|..++.++.++.-.|..|...+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            889998888888886542    24578889999999987 5678888899999999999999999999999999999998


Q ss_pred             cCCCCHHHHHHHHH--------cCCcHHHHh-hccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhc
Q 037562          563 TKFGTHEQIKHLVR--------EGCVKPLCD-LLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAE  633 (670)
Q Consensus       563 ~~~~~~~~~~~l~~--------~~~i~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g  633 (670)
                      ...  +....++.+        ..++..++. +.+.+++.+.+.++++..++.++..              .+..+.. .
T Consensus       167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr--------------ar~aL~~-~  229 (262)
T PF04078_consen  167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR--------------AREALRQ-C  229 (262)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT--------------HHHHHHH-H
T ss_pred             Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH--------------HHHHHHH-h
Confidence            873  344443322        113333333 4467788888899888888775433              2333422 1


Q ss_pred             hHHHHHHh----hcCCCHHHHHHHHHHHHHh
Q 037562          634 GLEKIENL----QSHDDNGISEKAVEILETY  660 (670)
Q Consensus       634 ~~~~l~~L----~~~~~~~v~~~a~~~l~~~  660 (670)
                      ..+.|.+-    .-.+|+.++..-.+++.+.
T Consensus       230 LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  230 LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            12222111    1234777787777776643

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.15  Score=51.53  Aligned_cols=270  Identities=11%  Similarity=0.071  Sum_probs=141.8

Q ss_pred             CCChHHHHHh----hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          323 HGAVPIFVKL----LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       323 ~~~i~~L~~l----L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                      .|.+..++..    ..+++..++..|+++|+|.++..|.-.... ..-.+..++.-|.++.+.+|+-.+..+|..+....
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~  331 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA  331 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence            3445444443    345888999999999999998855322211 12246677777777778899999999988877654


Q ss_pred             CCCChhh-hhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc---CCHHHHHHhcCCCCccchhHHHHHH
Q 037562          399 PQPPFNQ-VRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLGHSSSSVLTPALRTI  474 (670)
Q Consensus       399 ~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~~~L  474 (670)
                      .+..... .-++.-.+..++.+.+++++.++...++.++.......+.....   +....++-.++++++. ...||+..
T Consensus       332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~ACr~~  410 (533)
T KOG2032|consen  332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARACRSE  410 (533)
T ss_pred             hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHHHHH
Confidence            3332221 23444567778889999999999988888774322222221111   2223444445556654 34566666


Q ss_pred             HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHH-HHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHH
Q 037562          475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKE-VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKK  553 (670)
Q Consensus       475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~-a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  553 (670)
                      ...+..+-. .+...  ++++.   .+ +......+.. .-| ...+....++....+..     ...-++.+.-+.++.
T Consensus       411 ~~~c~p~l~-rke~~--~~~q~---~l-d~~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~  477 (533)
T KOG2032|consen  411 LRTCYPNLV-RKELY--HLFQE---SL-DTDMARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVRE  477 (533)
T ss_pred             HHhcCchhH-HHHHH--HHHhh---hh-HHhHHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHH
Confidence            555442211 11110  11111   11 1101111110 111 11121122332222211     111222232234555


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                      .|...-.+...+-.+....+.--......+..+..++-++++..+.+|+..+..
T Consensus       478 aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  478 AAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            554444444443233333333233356667777889999999999999987653

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.61  E-value=0.11  Score=51.43  Aligned_cols=172  Identities=12%  Similarity=0.064  Sum_probs=115.0

Q ss_pred             hhhHHHHH-HhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hh
Q 037562          407 RPALPVLA-QLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD-FQ  484 (670)
Q Consensus       407 ~~~i~~L~-~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~  484 (670)
                      .+.++.++ +.+++.++.+|..++.|++-.+--+.....     ..++.+...++.++..++..|+.++..+..... ..
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            35565544 888999999999999999998865553333     345667777777788899999999998875322 11


Q ss_pred             hHH-------HHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh----cCChhHHH
Q 037562          485 TQC-------IINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ----NTEFDTKK  553 (670)
Q Consensus       485 ~~~-------l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~v~~  553 (670)
                      ...       .....+...+.+.+.+. +++++..|+..++.+...+.-.-    ...++..|+-..-    .++.++++
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ  174 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ  174 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence            111       11235677888999999 99999999999999865321111    0223444444333    23467787


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC
Q 037562          554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA  590 (670)
Q Consensus       554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  590 (670)
                      .-...+-..+.. ++.+ +..+....++.+..+.+..
T Consensus       175 ~L~~Ffp~y~~s-~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  175 CLSVFFPVYASS-SPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHcC-CHHH-HHHHHHHHHHHHHHHHhCc
Confidence            777777777775 4444 4445556777777776543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.59  E-value=0.0007  Score=66.18  Aligned_cols=165  Identities=18%  Similarity=0.242  Sum_probs=101.2

Q ss_pred             cccEEEeccCcCcccccc-cccccCCCCcEEEEecCCCCccccC--CCccccccceeeecccccccccccchhhhccccc
Q 037562           23 EVKISEAYNCYRLENILI-EESSVMNNLVILCVHCCDHLINLVP--SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      .+..+++..|..+++... .-...+..|+.|..++|.++...+-  -....++|+.|.+++|..+.+........+.+.|
T Consensus       269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L  348 (483)
T KOG4341|consen  269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL  348 (483)
T ss_pred             HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence            345555558877765541 1113467788888888887644321  1234578888888988887766444445678888


Q ss_pred             ceeccccccccceeccccccccccccccccccccccccccccccccccC---CcccCCCCccEEeEecCCCccc-cccCC
Q 037562          100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG---NCAFTFPSLEILVVNYCPNMKI-FSGGE  175 (670)
Q Consensus       100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~i~~C~~l~~-~p~~~  175 (670)
                      +.+.+.+|.....-     . -..-....|.|+.|+++.|...+.-...   .....+..|+.+.+.+||.+.. .-+..
T Consensus       349 e~l~~e~~~~~~d~-----t-L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l  422 (483)
T KOG4341|consen  349 ERLDLEECGLITDG-----T-LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL  422 (483)
T ss_pred             hhhcccccceehhh-----h-HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence            88888888654321     0 0011135788888888888777665211   0123456788888888887641 11122


Q ss_pred             cCCCCccceeeeeccCCc
Q 037562          176 LSTPNLHKVQLSRWDGEE  193 (670)
Q Consensus       176 ~~~~~L~~l~i~~~~~~~  193 (670)
                      ...++|+.+++.++.+..
T Consensus       423 ~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  423 SICRNLERIELIDCQDVT  440 (483)
T ss_pred             hhCcccceeeeechhhhh
Confidence            346788887776665553

>PRK14707 hypothetical protein; Provisional

Probab=96.59  E-value=2.6  Score=50.74  Aligned_cols=351  Identities=16%  Similarity=0.126  Sum_probs=210.9

Q ss_pred             HHHHHHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhCCCchhH
Q 037562          283 VPRFVEFLM-RQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-P-SVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       283 l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~-~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      +..++..++ -+++.+.+..+......++. ++..++.+ +..+|..+++.++. + ++..+ +++..|.....+....+
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~~~~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCG-NAVSALAERLADESRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHcCcHHHH
Confidence            444555443 34446777777777777776 44555544 45566677776665 4 44554 45555544443444444


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh-hhcCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFN-FCRGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSD  437 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~  437 (670)
                      ..+ +...+-..++.+.+-++..+-..++.++.. +..+ +....... ..+-..+-.+-+-++..+...+...+..=..
T Consensus       242 ~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~  319 (2710)
T PRK14707        242 NEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA  319 (2710)
T ss_pred             HhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence            444 333466777777677777666666666554 4433 22222222 2333334444456677777777666655443


Q ss_pred             CChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562          438 GTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWI  516 (670)
Q Consensus       438 ~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~  516 (670)
                      .+.+..+ -++...+...+.-|+. ++..+...|+..|..-...++...+ -++..++...++.+..-++..+...|+..
T Consensus       320 ~d~~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        320 DDPELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             ccHhhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            3444443 2333444555555555 5656666666666555444544444 34455666666666655477777777777


Q ss_pred             HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHH
Q 037562          517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVT  596 (670)
Q Consensus       517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  596 (670)
                      |..-..++++..+.+-..|+-..|-.+-+=++..+...++.+|.--..+ +.+..+.|-..++...|-.+-+.+|..+..
T Consensus       398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            7776667777777776666666666666667888888888888777665 667777666666677777777899998887


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 037562          597 VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV  654 (670)
Q Consensus       597 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~  654 (670)
                      .+.+.|-.-+.....             .++.|.-.+....|..|..-++......|+
T Consensus       477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~  521 (2710)
T PRK14707        477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAA  521 (2710)
T ss_pred             HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            777777554443222             344555556666777777776655554444

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.21  Score=52.88  Aligned_cols=235  Identities=14%  Similarity=0.126  Sum_probs=143.5

Q ss_pred             ccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          238 EILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       238 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      +....|.+.|+.. ++.++.-++-.|.-..-+.  .. ..     +...+-+.+..++ .-.-++|..+++-+..++.. 
T Consensus       413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS--a~-~e-----iYe~lKevLy~D~-AvsGEAAgi~MGl~mlGt~~-  482 (929)
T KOG2062|consen  413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGS--AN-EE-----IYEKLKEVLYNDS-AVSGEAAGIAMGLLMLGTAN-  482 (929)
T ss_pred             cHHHHHHHHHHhccchhhhhhhhhhccchhccc--cc-HH-----HHHHHHHHHhccc-hhhhhHHHHhhhhHhhCcCc-
Confidence            4577788888754 4555555555554333331  11 11     3455666666666 45566666677766553321 


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh--
Q 037562          317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN--  393 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~--  393 (670)
                      .      .++.-+...-.. +.+.+.+...-.++-...+..+         ...++++-+..+.|+-+|...+.++.-  
T Consensus       483 ~------eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe---------~Ad~lI~el~~dkdpilR~~Gm~t~alAy  547 (929)
T KOG2062|consen  483 Q------EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE---------DADPLIKELLRDKDPILRYGGMYTLALAY  547 (929)
T ss_pred             H------HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh---------hhHHHHHHHhcCCchhhhhhhHHHHHHHH
Confidence            1      234445554443 5555655444444433322221         355666666677888888876665543  


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHh-hccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-CCCccchhHHH
Q 037562          394 FCRGKPQPPFNQVRPALPVLAQL-IRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-HSSSSVLTPAL  471 (670)
Q Consensus       394 l~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~  471 (670)
                      .....        .+++..|+.. ..+.+.+|+.+|..+|+.++..+++.         .+..+.+|. +-++-||..|+
T Consensus       548 ~GTgn--------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA  610 (929)
T KOG2062|consen  548 VGTGN--------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAA  610 (929)
T ss_pred             hccCc--------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHH
Confidence            22221        3455556655 55678999999999999998776643         345555664 46888999999


Q ss_pred             HHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          472 RTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       472 ~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      .+|+-.|.+.....       .+..|-.+..+. ..-||+.|+-+++.+..
T Consensus       611 ~ALGIaCAGtG~~e-------Ai~lLepl~~D~-~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  611 MALGIACAGTGLKE-------AINLLEPLTSDP-VDFVRQGALIALAMIMI  653 (929)
T ss_pred             HHHhhhhcCCCcHH-------HHHHHhhhhcCh-HHHHHHHHHHHHHHHHH
Confidence            99998887664322       233444555555 78899999999988765

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.051  Score=58.28  Aligned_cols=225  Identities=11%  Similarity=0.159  Sum_probs=138.5

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562          327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV  406 (670)
Q Consensus       327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  406 (670)
                      +.-+..+.++.+.++..++..|..+.... .....+...+++...+..+ .+.|+-+.-+|...+..+|.-.|       
T Consensus       730 qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------  800 (982)
T KOG4653|consen  730 QEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------  800 (982)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------
Confidence            33444556677888999999999998644 2344566677888888888 77777787788888888887533       


Q ss_pred             hhhHHHHHHh-hccCC---hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 037562          407 RPALPVLAQL-IRSND---EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD  482 (670)
Q Consensus       407 ~~~i~~L~~l-L~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  482 (670)
                      ..++|.+... ....+   ++-+..+-.++.+++..-.+......+ -++..++..+++++...|..++..+++++....
T Consensus       801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence            4456666553 22221   233444446666666444444343333 566777788888888889999999999987544


Q ss_pred             hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh---cCChHHHHHHhh-cCChhHHHHHHHH
Q 037562          483 FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID---SGLIGPIVNLLQ-NTEFDTKKEAAWA  558 (670)
Q Consensus       483 ~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~i~~L~~ll~-~~~~~v~~~a~~a  558 (670)
                      ......+ ...+..++.+.+.+...-+|+.|+..+..+..+.....-.+..   .+....+..... +.+..++..|+.+
T Consensus       880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~  958 (982)
T KOG4653|consen  880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC  958 (982)
T ss_pred             hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            3222222 1244555666655548889999999999987754332222221   122223333333 3345566666665


Q ss_pred             HHHh
Q 037562          559 ISNA  562 (670)
Q Consensus       559 L~~l  562 (670)
                      +-.+
T Consensus       959 leei  962 (982)
T KOG4653|consen  959 LEEI  962 (982)
T ss_pred             HHHH
Confidence            5544

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.56  E-value=2.3  Score=49.40  Aligned_cols=141  Identities=13%  Similarity=0.111  Sum_probs=96.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      +.+..++..+..+. ..+|..|.+||..+...++....   ...+-..+..-+.+.+..||+.|+..+|......++.-.
T Consensus       816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence            35777788888777 89999999999999986654321   122334455556678899999999999988766555333


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc---cCChhHHHHHHHHHHHhc
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR---SNDEEVLTDACWALSYLS  436 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~al~~L~~l~  436 (670)
                      ..     ...+...+ .++...||+.+..++..+|...|.-.     .....+++++.   ++...|+..+..++.++.
T Consensus       892 qy-----Y~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~-----~i~~~cakmlrRv~DEEg~I~kLv~etf~klW  959 (1692)
T KOG1020|consen  892 QY-----YDQIIERI-LDTGVSVRKRVIKILRDICEETPDFS-----KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW  959 (1692)
T ss_pred             HH-----HHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence            32     34556666 67778999999999999998865432     22334444444   223347777777776665

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.046  Score=55.69  Aligned_cols=250  Identities=14%  Similarity=0.170  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 037562          296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL  375 (670)
Q Consensus       296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l  375 (670)
                      +.++.-++--++-+..++ .++      .+.+.+-.++...+.-.-+.|...++-+.-+... .+      ++..+...-
T Consensus       425 ~~l~yG~~LGiGL~~MgS-an~------eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s-~e------ai~dm~tya  490 (926)
T COG5116         425 PELAYGVCLGIGLINMGS-ANR------EIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWS-VE------AIEDMRTYA  490 (926)
T ss_pred             HHHHHHHHhhhcchhccc-ccH------HHHHHHHHHHhcchhhhhhhhhhccceeeecCCC-HH------HHHHHHHHh
Confidence            355555555555444422 111      1345666666666655556665555544322211 01      123333333


Q ss_pred             cccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH
Q 037562          376 NENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL  455 (670)
Q Consensus       376 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L  455 (670)
                      .......+.+...--++-+....       ...+-..+-+++.+.|+-.|.....+++---....       +.|++..+
T Consensus       491 ~ETqhe~i~Rglgig~aLi~ygr-------qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~l  556 (926)
T COG5116         491 GETQHERIKRGLGIGFALILYGR-------QEMADDYINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTL  556 (926)
T ss_pred             cchhhhhHHhhhhhhhhHhhhhh-------HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhh
Confidence            23333344442221122111111       01222356677777787777776655543211111       12567777


Q ss_pred             HHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc
Q 037562          456 VEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS  534 (670)
Q Consensus       456 ~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~  534 (670)
                      +.. +++.+.+||..|.-+|+-+|..+.         +.+...+++|..+.++.||...+.+|+-.|++...+.      
T Consensus       557 Lh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------  621 (926)
T COG5116         557 LHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------  621 (926)
T ss_pred             heeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------
Confidence            777 677888999999999998887543         3555667777777699999999999999888644322      


Q ss_pred             CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC
Q 037562          535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD  591 (670)
Q Consensus       535 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  591 (670)
                       .+..|-.++.+...-||+.|+.+++-+...++++.....  .++++.+.+.+.+++
T Consensus       622 -a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh  675 (926)
T COG5116         622 -ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKH  675 (926)
T ss_pred             -HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence             344555566677888999999999888765444322221  124455555554433

>PRK14707 hypothetical protein; Provisional

Probab=96.49  E-value=2.9  Score=50.37  Aligned_cols=399  Identities=15%  Similarity=0.071  Sum_probs=218.4

Q ss_pred             HHHHHHHhc--CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCChhh
Q 037562          240 LPAMVDGVW--SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR-QDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       240 i~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      +..+++...  .++.+-+..+......++..  ......+ ..-.|..++..++. +++++.+..+...-..++. ....
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l  240 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL  240 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence            556666654  34455554444443434332  2222222 33344455554433 5545666655555555555 4444


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562          317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC  395 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  395 (670)
                      +..+ +...+-..++.|.. ++...-..++..+..=..+.+..++.+-.. .+...++-+.+-.+..+-+.|+..|..=.
T Consensus       241 ~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl  318 (2710)
T PRK14707        241 RNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL  318 (2710)
T ss_pred             HHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence            4443 44445555665554 666566666665554333555555544332 35556677767778788776666665533


Q ss_pred             cCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHH
Q 037562          396 RGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRT  473 (670)
Q Consensus       396 ~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~  473 (670)
                      .+++.-..... .++-..|-.+-+-+|..+...+..+|..=...+++..+.+- ...+..++.-++. ++..+...|+..
T Consensus       319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            33333222222 23333333444456766776666666654444444444333 3455666666655 566666666666


Q ss_pred             HHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHH
Q 037562          474 IRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKK  553 (670)
Q Consensus       474 L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  553 (670)
                      |..=..++++..+ -++...+...++.|..-++..+...++..|..-..++.+..+.+--.++...|-.+-+=+|..+..
T Consensus       398 LA~~l~~d~~l~~-~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRK-GLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhh-hcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            6655555555444 445556666666666554777888888888777677676665555445444444444556777777


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHH-HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh
Q 037562          554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVT-VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA  632 (670)
Q Consensus       554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~-~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (670)
                      .|+..|..-..+ +++..+.|-..++...|-.+-+.++..... .+.++...+....              .....|..-
T Consensus       477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~--------------~l~~~~~~~  541 (2710)
T PRK14707        477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL--------------QLRKAFDAH  541 (2710)
T ss_pred             HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch--------------hhhhhhhhH
Confidence            777777655444 556666666666777777777888765433 3334444433211              123344444


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          633 EGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       633 g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      +....+..+..+.+.+.-..+..-|...+
T Consensus       542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l  570 (2710)
T PRK14707        542 QVVNTLKALSKWPDKQLCAVAASGLAERL  570 (2710)
T ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence            44555666666666665666555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.39  E-value=0.00055  Score=73.46  Aligned_cols=90  Identities=19%  Similarity=0.244  Sum_probs=55.2

Q ss_pred             CccccEEEeccC-cCccccc---ccccccCCCCcEEEEecCCCCccccC--CCccccccceeeecccccccccccchhhh
Q 037562           21 GMEVKISEAYNC-YRLENIL---IEESSVMNNLVILCVHCCDHLINLVP--SSTSFQNLTNLVVSHCKRLKIVLTSSIAK   94 (670)
Q Consensus        21 ~~~L~~L~i~~c-~~l~~~~---~~~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~~~   94 (670)
                      ..+|+.|.+.+| ......+   ......+++|++|++.+|..+....-  -...+++|+.|.+.+|..+++........
T Consensus       213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~  292 (482)
T KOG1947|consen  213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE  292 (482)
T ss_pred             CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence            348888888873 3322222   11124567888888888876433211  11226788888888887766543334456


Q ss_pred             cccccceecccccccc
Q 037562           95 TLVRLRYMEIESCDKI  110 (670)
Q Consensus        95 ~l~~L~~L~i~~c~~l  110 (670)
                      .+|+|++|++++|..+
T Consensus       293 ~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  293 RCPSLRELDLSGCHGL  308 (482)
T ss_pred             hcCcccEEeeecCccc
Confidence            7788888888888776

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.36  E-value=0.1  Score=58.11  Aligned_cols=145  Identities=13%  Similarity=0.134  Sum_probs=115.9

Q ss_pred             hhhhHHHHHHhhc----cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhhcC
Q 037562          406 VRPALPVLAQLIR----SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIVKG  480 (670)
Q Consensus       406 ~~~~i~~L~~lL~----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~  480 (670)
                      .....|.++...+    .+||+++.+|.-+++.+..-+.....     .-++.++..+. ++++.+|.++.-+++.++..
T Consensus       917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence            3556677777774    45799999999999998765443333     45688888887 78999999999999999886


Q ss_pred             CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562          481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS  560 (670)
Q Consensus       481 ~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  560 (670)
                      .+...+     -.-+.|...|.+. ++.||+.|..++.++...+     .+.-.|.++.+..++.+++.+++..|-..+.
T Consensus       992 fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen  992 FPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred             cccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            665444     3556788889999 9999999999999997642     2234688999999999999999999998888


Q ss_pred             HhcCCC
Q 037562          561 NATKFG  566 (670)
Q Consensus       561 ~l~~~~  566 (670)
                      .++..+
T Consensus      1061 Els~k~ 1066 (1251)
T KOG0414|consen 1061 ELSSKG 1066 (1251)
T ss_pred             Hhhhcc
Confidence            888875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.36  E-value=0.00038  Score=70.09  Aligned_cols=82  Identities=13%  Similarity=0.056  Sum_probs=39.2

Q ss_pred             cccEEEeccCcCcc-----cccccccccCCCCcEEEEecCCCC------ccccCCCccccccceeeecccccccccccch
Q 037562           23 EVKISEAYNCYRLE-----NILIEESSVMNNLVILCVHCCDHL------INLVPSSTSFQNLTNLVVSHCKRLKIVLTSS   91 (670)
Q Consensus        23 ~L~~L~i~~c~~l~-----~~~~~~~~~~~~L~~L~i~~c~~l------~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~   91 (670)
                      +|+.|.+.+|. ++     .++.. ....++|++|.++++.--      ..++.....+++|++|++++|.--...  ..
T Consensus        24 ~L~~l~l~~~~-l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~   99 (319)
T cd00116          24 CLQVLRLEGNT-LGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG--CG   99 (319)
T ss_pred             hccEEeecCCC-CcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH--HH
Confidence            67777777764 21     11111 234556777766655311      111112223556777777766432211  11


Q ss_pred             hhhcc---cccceecccccc
Q 037562           92 IAKTL---VRLRYMEIESCD  108 (670)
Q Consensus        92 ~~~~l---~~L~~L~i~~c~  108 (670)
                      .+..+   ++|++|++++|.
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             HHHHHhccCcccEEEeeCCc
Confidence            22222   337777776664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.36  E-value=0.5  Score=43.27  Aligned_cols=139  Identities=9%  Similarity=0.122  Sum_probs=99.2

Q ss_pred             hHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc----CCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHH
Q 037562          468 TPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH----NHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVN  542 (670)
Q Consensus       468 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~----~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~  542 (670)
                      .+|+..+-.++. .++....+.++.+--.+..+|..    .+.+-.|-.+.++++.+.. ++.+.+..+...+++|.+++
T Consensus        97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            345555555555 55666667777766666666643    3255689999999999988 46667778889999999999


Q ss_pred             HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHc--------CCc-HHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          543 LLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE--------GCV-KPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       543 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--------~~i-~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      .++.+++..+..|...+..+...  +....++.+.        -.+ ..+..+.+.+++.+.+.++++..++.++.
T Consensus       176 ime~GSelSKtvA~fIlqKIlld--D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLD--DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhc--cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999874  2333333321        112 23444557888999999999988876543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.32  E-value=0.018  Score=46.68  Aligned_cols=70  Identities=19%  Similarity=0.308  Sum_probs=57.9

Q ss_pred             CcHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 037562          579 CVKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL  657 (670)
Q Consensus       579 ~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l  657 (670)
                      ++..|++++ ++.|+.+...|+.-|+.+++..+..             +..+.+.|+-+.+-.|++|+|++|+..|...+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            477888888 5567888888899999999886653             56789999999999999999999999999999


Q ss_pred             HHhc
Q 037562          658 ETYW  661 (670)
Q Consensus       658 ~~~~  661 (670)
                      +++.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.30  E-value=0.016  Score=62.45  Aligned_cols=185  Identities=20%  Similarity=0.195  Sum_probs=130.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-------------hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 037562          284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTS-------------ENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGN  350 (670)
Q Consensus       284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-------------~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  350 (670)
                      ..++.+|++   +++-..|+.++.-+..+++             -+++.+. ..++|.+++.........+..-+.+|.+
T Consensus       818 ~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  818 EKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            345555554   2334445555555544332             2333333 3678999998888788888889999999


Q ss_pred             hhCCCchhHHHHHh-c-CChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCC---hhHH
Q 037562          351 VAGDSPRCRDLVLS-Q-GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSND---EEVL  425 (670)
Q Consensus       351 l~~~~~~~~~~i~~-~-~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~  425 (670)
                      +..+-|.  +.+.. . ..+|.|++.+ .-.|..++-.+..++.-+....+.-.......++|.+..+-.+.|   ..||
T Consensus       894 Vl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  894 VLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence            8876654  22222 1 2345555666 678889989999999888877766667777889999888877665   6799


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHH
Q 037562          426 TDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR  475 (670)
Q Consensus       426 ~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  475 (670)
                      ..|+.++..+.+.-+...-......++..+.+.|+++.--+|.+|.++=.
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            99999999999844433333455588999999999998889999987643

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.27  E-value=0.18  Score=53.01  Aligned_cols=132  Identities=18%  Similarity=0.215  Sum_probs=89.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562          327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV  406 (670)
Q Consensus       327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  406 (670)
                      ..++...+ .+...+.-|+..+.....+-|..++.     ++..++.++ .+.|..+|..|...|..+|.+.+    ..+
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v   94 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHV   94 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-H
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHH
Confidence            34555555 57889999999999999999987766     578899999 78889999999999999998753    345


Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC---CCCccchhHHHHHHHHh
Q 037562          407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG---HSSSSVLTPALRTIRNI  477 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~l  477 (670)
                      ..+...|+++|+++++.....+=.+|..+...++.        +.+..+...+.   ++++.+|+.++..|..=
T Consensus        95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k  160 (556)
T PF05918_consen   95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK  160 (556)
T ss_dssp             HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence            67888999999999877777777777666543332        22333444433   46677899988877433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.24  E-value=0.0015  Score=66.65  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=30.6

Q ss_pred             ccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccc
Q 037562           40 IEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIE  105 (670)
Q Consensus        40 ~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~  105 (670)
                      .+|.-.++.|+.|++++-. +..+..+ ....++|+.|+++.- .++.+ ++..+..|..|++|.++
T Consensus       286 ~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N-~i~~l-~~~sf~~L~~Le~LnLs  349 (873)
T KOG4194|consen  286 EGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSN-RITRL-DEGSFRVLSQLEELNLS  349 (873)
T ss_pred             cccccccchhhhhccchhh-hheeecchhhhcccceeEecccc-ccccC-ChhHHHHHHHhhhhccc
Confidence            3334456666777665532 3333222 234467777777643 33333 22333445555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.21  E-value=0.0032  Score=55.89  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=46.7

Q ss_pred             cCCCCcEEEEecCCCCccccCCCc-cccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccc
Q 037562           45 VMNNLVILCVHCCDHLINLVPSST-SFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQD  123 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~~~~~~~-~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~  123 (670)
                      ....+++|++.++. +..+. ..+ .+.+|+.|+++++ .++.+   ..+..+++|++|++++=. ++++..       .
T Consensus        17 n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l---~~l~~L~~L~~L~L~~N~-I~~i~~-------~   82 (175)
T PF14580_consen   17 NPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNN-QITKL---EGLPGLPRLKTLDLSNNR-ISSISE-------G   82 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S-----TT----TT--EEE--SS----S-CH-------H
T ss_pred             cccccccccccccc-ccccc-chhhhhcCCCEEECCCC-CCccc---cCccChhhhhhcccCCCC-CCcccc-------c
Confidence            34568889998874 43433 233 5789999999988 45555   456678999999886532 333210       0


Q ss_pred             ccccccccccccccc--cccccccccCCcccCCCCccEEeEecCCCcccccc----CCcCCCCccceeeeeccCCc
Q 037562          124 EVITFRELKELNLLQ--MQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG----GELSTPNLHKVQLSRWDGEE  193 (670)
Q Consensus       124 ~~~~~~~L~~L~l~~--~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~----~~~~~~~L~~l~i~~~~~~~  193 (670)
                      -...||+|++|.+.+  ..++..+.   ....+|+|+.|++.+.|--+ -+.    -+..+|+|+.|+-..+....
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~---~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~~~E  154 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELE---PLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVTEEE  154 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCG---GGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETTS-B
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhH---HHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEccHHH
Confidence            012489999999874  23443332   24568999999999887422 121    12347999999776666443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.21  E-value=0.24  Score=45.26  Aligned_cols=138  Identities=13%  Similarity=0.050  Sum_probs=103.0

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc-----CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562          512 EVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN-----TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL  586 (670)
Q Consensus       512 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  586 (670)
                      .|...+..++ ..++.+..++++.+--.+..++..     +.+..|..+.++++.+...++++...++...++++..++.
T Consensus        98 naL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri  176 (293)
T KOG3036|consen   98 NALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence            3444444444 457778888998887777777763     3467899999999999999999999999999999999999


Q ss_pred             ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH-----HHHhhcCCCHHHHHHHHHHHHHh
Q 037562          587 LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK-----IENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       587 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      ++.++...+..|..++..|+-++.-..+          .++..++...+..     +.++.+.+++.+-+.+++...++
T Consensus       177 me~GSelSKtvA~fIlqKIlldD~GL~Y----------iCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrL  245 (293)
T KOG3036|consen  177 MESGSELSKTVATFILQKILLDDVGLYY----------ICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRL  245 (293)
T ss_pred             HhcccHHHHHHHHHHHHHHhhccccHHH----------HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999877654443          3555555544443     34556667777666655555444

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.19  E-value=0.057  Score=53.35  Aligned_cols=108  Identities=15%  Similarity=0.156  Sum_probs=82.8

Q ss_pred             HHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHH
Q 037562          453 PRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAV  531 (670)
Q Consensus       453 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l  531 (670)
                      ..+.+.+++.+..+|..|+.++|-++--+.....     ..++.+...++.+ +..++..|+.++..+.. +........
T Consensus        30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~  103 (298)
T PF12719_consen   30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSE  103 (298)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccch
Confidence            3455888999999999999999999876654333     3467788888777 99999999999999876 222222222


Q ss_pred             H-------hcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562          532 I-------DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG  566 (670)
Q Consensus       532 ~-------~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  566 (670)
                      .       ...++..+.+.+.+.+++++..|+..++.+...+
T Consensus       104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            2       2456778888888889999999999999998765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.17  E-value=0.00063  Score=73.00  Aligned_cols=118  Identities=22%  Similarity=0.257  Sum_probs=57.6

Q ss_pred             ccccceeeecccccccccccchhhhcccccceeccccc-cccceeccccccccccccccccccccccccccccccccccC
Q 037562           70 FQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC-DKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG  148 (670)
Q Consensus        70 ~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c-~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  148 (670)
                      +++|+.|.+.+|..+......+.....++|+.|++.+| .......    ..........++|+.|.+..|..++.....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch----hHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            56666777777766665221244556666777776664 2111110    000011223456666666666654443332


Q ss_pred             CcccCCCCccEEeEecCCCcc--ccccCCcCCCCccceeeeeccC
Q 037562          149 NCAFTFPSLEILVVNYCPNMK--IFSGGELSTPNLHKVQLSRWDG  191 (670)
Q Consensus       149 ~~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~i~~~~~  191 (670)
                      .....+|+|+.|.+.+|+.++  .+-.....+|+|++|+++.+..
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            122235666666666666543  1111122356666666654443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.13  E-value=0.43  Score=50.62  Aligned_cols=192  Identities=11%  Similarity=0.168  Sum_probs=134.8

Q ss_pred             hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh
Q 037562          405 QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ  484 (670)
Q Consensus       405 ~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  484 (670)
                      ...+++|.+++++...|..+|...+.-+-.....   ..+..++..+++.+..-+.+.++.+|+.++.++..++..-...
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            4578999999999999999997777766665544   3344677789999999999999999999999999887532111


Q ss_pred             hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCC-hHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562          485 TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGL-IGPIVNLLQNTEFDTKKEAAWAISNAT  563 (670)
Q Consensus       485 ~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~~l~  563 (670)
                         ......+..+...-.+. +..+|....-+++.++......    ...++ ...+.+.++++-...|..+.+++..-.
T Consensus       404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence               22223344444444434 7788888888888886542221    12232 345555666676788888888887766


Q ss_pred             CCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          564 KFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       564 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      ..-+...    +...+++.++-+.-+++..++..+..++...+...++
T Consensus       476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~  519 (690)
T KOG1243|consen  476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK  519 (690)
T ss_pred             cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence            5322111    3445888888899999999999999998887765444

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.10  E-value=2.4  Score=44.88  Aligned_cols=285  Identities=14%  Similarity=0.106  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 037562          253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKL  332 (670)
Q Consensus       253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~l  332 (670)
                      ..+..|+..++.....-+-..+..+     ....-.++......++|..+...+..+..+....-. ...    ..+...
T Consensus         5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~   74 (464)
T PF11864_consen    5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRD   74 (464)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHH
Confidence            4456666666666554322222221     112234555554468899998888888874433111 111    112222


Q ss_pred             hC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC--------------------------ChhHHH
Q 037562          333 LA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA--------------------------NLSMLR  385 (670)
Q Consensus       333 L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~--------------------------~~~~~~  385 (670)
                      +. ...++.-..-+.+|..|+.+....  ..++.+..+.+...+...-                          +.....
T Consensus        75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~  152 (464)
T PF11864_consen   75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS  152 (464)
T ss_pred             HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence            22 233333344555666666554433  1235555666665552110                          122233


Q ss_pred             HHHHHHHhhhcCCC-CCChhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCCHHHHHHhcC
Q 037562          386 TATWTLFNFCRGKP-QPPFNQVRPALPVLAQLIR-SNDEEVLTDACWALSYLSDG---TNDKVQAVIEAGVYPRLVELLG  460 (670)
Q Consensus       386 ~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~-~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~i~~L~~lL~  460 (670)
                      .....+.|+...+. ......+.+.+..+..+-. +.++.....++..+-.+...   +++...     .++..|.... 
T Consensus       153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~-  226 (464)
T PF11864_consen  153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV-  226 (464)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence            44445555555442 2233444555555555533 23333444445444443321   111111     1222333332 


Q ss_pred             CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc--cC---CchhHHHHHHHHHHHhhcCCHHHHH-HHHhc
Q 037562          461 HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV--HN---HEESIKKEVSWIISNITCGNREQIQ-AVIDS  534 (670)
Q Consensus       461 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~--~~---~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~  534 (670)
                       +..+....+-.++.||+...-..       ..+..|..+|.  +.   .+..+.+.|+..+..+..+..+... .+--.
T Consensus       227 -~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~  298 (464)
T PF11864_consen  227 -NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS  298 (464)
T ss_pred             -cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence             23367788888999998643221       13566777773  21   1556677899999998775422211 11112


Q ss_pred             --CChHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562          535 --GLIGPIVNLLQNTEFDTKKEAAWAISNAT  563 (670)
Q Consensus       535 --~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  563 (670)
                        -+++.+...++.++..+-.++...+.++.
T Consensus       299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  299 PSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence              26888888888888777777777777777

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.08  E-value=0.13  Score=47.96  Aligned_cols=194  Identities=12%  Similarity=0.057  Sum_probs=121.1

Q ss_pred             CccchhHHHHHHHHhhcCCchhhHHHHhC-CChHHHHHhh-------ccCC-chhHHH---HHHHHHHHhhcCCHHHHHH
Q 037562          463 SSSVLTPALRTIRNIVKGDDFQTQCIINC-GALPYFLDML-------VHNH-EESIKK---EVSWIISNITCGNREQIQA  530 (670)
Q Consensus       463 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~~~~L~~~l-------~~~~-~~~v~~---~a~~~L~~l~~~~~~~~~~  530 (670)
                      +++.|+.|+.-|+.--...++....+... |.+..|++=+       ..+. +...-.   .|...+..+++ .++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            34456666666665544444444444433 4444443332       1110 121122   23333444444 5888889


Q ss_pred             HHhcCChHHHHHHhhcCC-----hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562          531 VIDSGLIGPIVNLLQNTE-----FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI  605 (670)
Q Consensus       531 l~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  605 (670)
                      ++++++.-.|..++...+     +.+|-.+.++++.+...++++...++.+.++++...+.++.++.-.+..|..++.++
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999999888888887432     578999999999999998999999999999999999999999998999999999999


Q ss_pred             HHhhhhhhccCCCCCCccHHHHHHHHhchHHH-HHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562          606 LKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK-IENLQSHDDNGISEKAVEILETYWSS  663 (670)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~L~~~~~~~v~~~a~~~l~~~~~~  663 (670)
                      +.++......+..   ..+|   ..-...+.. +..+....++.+-+.......++.+.
T Consensus       167 L~dd~GL~yiC~t---~eRf---~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  167 LLDDVGLNYICQT---AERF---FAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHSHHHHHHHTSS---HHHH---HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HcchhHHHHHhcC---HHHH---HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            9887776665542   2222   222222333 45667777888777666665555443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.03  E-value=0.32  Score=48.89  Aligned_cols=176  Identities=12%  Similarity=0.144  Sum_probs=113.4

Q ss_pred             CHHHHHHHHHHHHH-hhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHH
Q 037562          337 SVDVRKQTVWALGN-VAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQ  415 (670)
Q Consensus       337 ~~~v~~~a~~~L~~-l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~  415 (670)
                      ..+-+..|+.-|.. ++.++...=+..+. ..+..+++.+.++.+...+..|+.+|..++...+..-+....-++..++.
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence            34455566654443 34333221111111 13566778886668888899999999999998766655555666666666


Q ss_pred             hhccCChhHHHHHHH-HHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCCh
Q 037562          416 LIRSNDEEVLTDACW-ALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGAL  494 (670)
Q Consensus       416 lL~~~~~~v~~~al~-~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~  494 (670)
                      .-.+.++++...|.. |+..++.+.+..        -+..+..++.+.|......++..+..+...-+...-..+-..+.
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia  450 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA  450 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence            666666665555554 444455554432        23445566666777777777778888876443222222335789


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          495 PYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       495 ~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      |.+++...+. +..||+.|+++|..+..
T Consensus       451 P~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  451 PCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence            9999999999 99999999999988854

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.01  E-value=0.0078  Score=48.70  Aligned_cols=71  Identities=15%  Similarity=0.250  Sum_probs=60.2

Q ss_pred             ChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          536 LIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       536 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                      ++..|+++|. +.|+.+...||.-|+.++.. .|..+..+-+.|+-..+++++.++|++|+..|+.++..++.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~-~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRH-YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHH-ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            5788899994 56888999999999999997 56777777788999999999999999999999999999874

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.00  E-value=0.66  Score=47.18  Aligned_cols=192  Identities=11%  Similarity=0.108  Sum_probs=116.4

Q ss_pred             HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHh-cCChHHHHHHhccc
Q 037562          301 KAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS-PRCRDLVLS-QGALIPLLAELNEN  378 (670)
Q Consensus       301 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~-~~~i~~Ll~~l~~~  378 (670)
                      .|++.|-.+....+.....+.+.+++..+++.++.+-....+.  .-...-.... ++.+..... .. +        ..
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-i--------~~   71 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYS-I--------SY   71 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccc-c--------CH
Confidence            4677777777767777888899999999999886422111110  0000000110 010000000 00 0        00


Q ss_pred             CChhHHHHHHHHHHhhhc-CCCC--C-Chhhh-hhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 037562          379 ANLSMLRTATWTLFNFCR-GKPQ--P-PFNQV-RPALPVLAQLIRSN---DEEVLTDACWALSYLSDGTNDKVQAVIEAG  450 (670)
Q Consensus       379 ~~~~~~~~a~~~L~~l~~-~~~~--~-~~~~~-~~~i~~L~~lL~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~  450 (670)
                      ....+.+..+.++..+.. ....  . +-... ......|...+++.   .+.+...|+.++..+..+.+.....+.+.|
T Consensus        72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~G  151 (379)
T PF06025_consen   72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAG  151 (379)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence            011233344444444444 2211  1 11222 34556666777655   478999999999999999998889999999


Q ss_pred             CHHHHHHhcC-CC---CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC
Q 037562          451 VYPRLVELLG-HS---SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN  504 (670)
Q Consensus       451 ~i~~L~~lL~-~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~  504 (670)
                      +++.++..+. .+   +.++....-.+++.+|- +....+.+.+.+.++.+++++.+.
T Consensus       152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence            9999999988 42   34455555677777777 445567788889999999998765

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.87  E-value=2.8  Score=46.72  Aligned_cols=206  Identities=17%  Similarity=0.212  Sum_probs=122.7

Q ss_pred             hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---ccCC----hhHHHHHHH
Q 037562          322 DHGAVPIFVKLLAS-----PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---ENAN----LSMLRTATW  389 (670)
Q Consensus       322 ~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~----~~~~~~a~~  389 (670)
                      +.|++..++.++.+     .........+..|...+. -+.+|+.+++.|+++.|+..+.   ....    ..+....+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            46889999998875     234555566666666554 4678999999999999998874   2222    345454444


Q ss_pred             HHHhhhcCCCCCChh-------------hhhhhHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHcCCH
Q 037562          390 TLFNFCRGKPQPPFN-------------QVRPALPVLAQLIRS----NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVY  452 (670)
Q Consensus       390 ~L~~l~~~~~~~~~~-------------~~~~~i~~L~~lL~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i  452 (670)
                      ++-.+..........             ....-+..++..+.+    .++.+....+++|.+++.+.++..+.+++    
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~----  269 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE----  269 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH----
Confidence            444443322111000             012335556666654    36889999999999999998888776665    


Q ss_pred             HHHHHhcCC---C--CccchhHHHHHHHHhhcCCc------hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562          453 PRLVELLGH---S--SSSVLTPALRTIRNIVKGDD------FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT  521 (670)
Q Consensus       453 ~~L~~lL~~---~--~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~  521 (670)
                       .+-+.++-   +  ...--...+.+++.++.+-+      .....+++.|++...++.+... -|..           .
T Consensus       270 -~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~  336 (802)
T PF13764_consen  270 -HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------K  336 (802)
T ss_pred             -HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------c
Confidence             22333221   1  11111233556666654322      2355667888888888887665 3333           1


Q ss_pred             cCCHHHHHHHHhcCChHHHHHHhh
Q 037562          522 CGNREQIQAVIDSGLIGPIVNLLQ  545 (670)
Q Consensus       522 ~~~~~~~~~l~~~~~i~~L~~ll~  545 (670)
                      ....+....+++...+|..+++|.
T Consensus       337 ~~~s~eWk~~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  337 NTDSPEWKEFLSRPSLPYILRLLR  360 (802)
T ss_pred             cCCCHHHHHHhcCCcHHHHHHHHH
Confidence            113444556666677777777765

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.77  E-value=1.4  Score=42.19  Aligned_cols=203  Identities=10%  Similarity=0.068  Sum_probs=142.5

Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh------hhhHHHHHHhhccCChhHHHHHHHHHH
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV------RPALPVLAQLIRSNDEEVLTDACWALS  433 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~i~~L~~lL~~~~~~v~~~al~~L~  433 (670)
                      ..+.+.|.+..++..+ ...+-+.+..++.+..++-+..........      ...+..++.--.. .+++...+-..+.
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            3466778888999988 777778889999999998877633322222      2344444444111 2455544444455


Q ss_pred             HhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCC----hHHHHHhhccCCchhH
Q 037562          434 YLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGA----LPYFLDMLVHNHEESI  509 (670)
Q Consensus       434 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~----~~~L~~~l~~~~~~~v  509 (670)
                      ....+ +.....+..+.-+......++.++-++...|..+...+.......+..++..+.    .+..-.++.++ +.-.
T Consensus       151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            54433 445666777788888889999999899999999998887766655555654433    34466677777 9999


Q ss_pred             HHHHHHHHHHhhcC--C-HHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562          510 KKEVSWIISNITCG--N-REQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG  566 (670)
Q Consensus       510 ~~~a~~~L~~l~~~--~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  566 (670)
                      +..+...++.+..+  + ....+++.+..-+..++.+|+++...+|.+|-....-+..+.
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            99999999998763  2 233444445567889999999999999999999888877653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.75  E-value=0.0026  Score=56.13  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             cCCCCcEEEEecCCCCcccc--CCCccccccceeeecccccccccccchhhhcccccceecccccccc
Q 037562           45 VMNNLVILCVHCCDHLINLV--PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKI  110 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~~~--~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l  110 (670)
                      .++.++.|.+.+|..+..+-  .-.+.+|+|+.|+|++|+.+++- ...++..+++|+.|.|++.+.+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence            34455555555555443321  11123445555555555555442 1123344445555544444433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.0045  Score=61.11  Aligned_cols=153  Identities=17%  Similarity=0.181  Sum_probs=89.9

Q ss_pred             ccccEEEeccCcCccccccc-ccccCCCCcEEEEecCCCC-ccccCCCccccccceeeecccccc-cccccchhhhcccc
Q 037562           22 MEVKISEAYNCYRLENILIE-ESSVMNNLVILCVHCCDHL-INLVPSSTSFQNLTNLVVSHCKRL-KIVLTSSIAKTLVR   98 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l-~~~~~~~~~~~~L~~L~i~~c~~l-~~l~~~~~~~~l~~   98 (670)
                      .+|+.|.++.-. |.....+ ....++.|+.|.+++|.-- +.+......||+|+.|.+.+-..+ ...   .....+..
T Consensus       172 p~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~---~~~~i~~~  247 (505)
T KOG3207|consen  172 PSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA---TSTKILQT  247 (505)
T ss_pred             ccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec---chhhhhhH
Confidence            388888877532 2211111 1135789999999999722 233344456899999999876422 222   12335678


Q ss_pred             cceeccccccccceecccccccccccccccccccccccccc--ccccccccC--CcccCCCCccEEeEecCCCcccccc-
Q 037562           99 LRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQM--QNLISFCSG--NCAFTFPSLEILVVNYCPNMKIFSG-  173 (670)
Q Consensus        99 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~--~~~~~~~~L~~L~i~~C~~l~~~p~-  173 (670)
                      |++|++++-..+..-       .......||.|+-|.+..+  +.+.....+  ..-..||+|+.|.|..=+ +..++. 
T Consensus       248 L~~LdLs~N~li~~~-------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl  319 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFD-------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSL  319 (505)
T ss_pred             HhhccccCCcccccc-------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-ccccccc
Confidence            899999876644211       0112346888888888764  444433221  113578999999987643 333332 


Q ss_pred             -CCcCCCCccceee
Q 037562          174 -GELSTPNLHKVQL  186 (670)
Q Consensus       174 -~~~~~~~L~~l~i  186 (670)
                       ....+++|++|.+
T Consensus       320 ~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  320 NHLRTLENLKHLRI  333 (505)
T ss_pred             chhhccchhhhhhc
Confidence             2234677787753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.66  E-value=0.0011  Score=56.45  Aligned_cols=128  Identities=20%  Similarity=0.258  Sum_probs=81.1

Q ss_pred             CCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccc
Q 037562           46 MNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEV  125 (670)
Q Consensus        46 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~  125 (670)
                      +.+...|.++.- ++..+|+.+..+.+|+.|.+++- .++.+  +....++|.|+.|.+. +..+..++.        ..
T Consensus        32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~l--p~~issl~klr~lnvg-mnrl~~lpr--------gf   98 (264)
T KOG0617|consen   32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEEL--PTSISSLPKLRILNVG-MNRLNILPR--------GF   98 (264)
T ss_pred             hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhc--Chhhhhchhhhheecc-hhhhhcCcc--------cc
Confidence            345555666543 56777887777888888887764 45555  3456678888888774 333433321        22


Q ss_pred             ccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562          126 ITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       126 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      ..||.|+.|++.. .+|..-...+..+-+..|+.|++.+- ..+.+|..+..+++|+.|.+++
T Consensus        99 gs~p~levldlty-nnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd  159 (264)
T KOG0617|consen   99 GSFPALEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD  159 (264)
T ss_pred             CCCchhhhhhccc-cccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc
Confidence            4588888888764 23333333334556677777887763 4677888877778888776644

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.64  E-value=0.66  Score=46.75  Aligned_cols=173  Identities=12%  Similarity=0.121  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHhhhcCCCCCChh-hhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc
Q 037562          382 SMLRTATWTLFNFCRGKPQPPFN-QVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL  459 (670)
Q Consensus       382 ~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL  459 (670)
                      +-+..|..-|..+.......... ....++..++..|.+ .++..+..|++.|..++.+.+.....-.+ -++..++..-
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa  380 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAA  380 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHH
Confidence            44445555444444333233222 124566677788877 67889999999999999876654332222 2334444444


Q ss_pred             CCCCccchhHHHH-HHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCCh
Q 037562          460 GHSSSSVLTPALR-TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLI  537 (670)
Q Consensus       460 ~~~~~~v~~~a~~-~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i  537 (670)
                      .+.++.+...|.. ++.-++.+.+...        +..+..++... |......+...+..++.. ..+....++ .++.
T Consensus       381 ~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~dia  450 (516)
T KOG2956|consen  381 KDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PDIA  450 (516)
T ss_pred             hCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhh
Confidence            4555555544444 4455555444332        22333444445 555555566666666653 223222222 4689


Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562          538 GPIVNLLQNTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       538 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~  565 (670)
                      |.+++..++.+..||+.|+++|..+...
T Consensus       451 P~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  451 PCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             hHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            9999999999999999999999888653

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=1.8  Score=46.27  Aligned_cols=298  Identities=17%  Similarity=0.124  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHcC--CChhhHHHHHhCCCh
Q 037562          256 LEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-------DYPQLQFKAAWALTNIAS--GTSENTKVVIDHGAV  326 (670)
Q Consensus       256 ~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~~~i  326 (670)
                      ..|+..+..+.+....     ---.|+++.++..+...       +++.-.+-|.+.++++..  ..+....-+++.-++
T Consensus       388 laal~fl~~~~sKrke-----~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv  462 (970)
T COG5656         388 LAALFFLIISKSKRKE-----ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV  462 (970)
T ss_pred             HHHHHHHHHHhcccch-----hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence            4455555555444211     11246788888888321       235556677777777665  333334444444556


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC--hh
Q 037562          327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP--FN  404 (670)
Q Consensus       327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~  404 (670)
                      +.++..++++..-++..|+..+..+..+-+   +...-..+.+...+.+ ++.+-.++..|+-++..+..+.....  ..
T Consensus       463 ~hv~P~f~s~ygfL~Srace~is~~eeDfk---d~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sa  538 (970)
T COG5656         463 NHVIPAFRSNYGFLKSRACEFISTIEEDFK---DNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSA  538 (970)
T ss_pred             HHhhHhhcCcccchHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence            677777888889999999999999954332   2222333566677777 44777888899999998887762221  11


Q ss_pred             hhhhhHHHHHHhhccCChhHHHHHHHHHH-Hhcc----CChHHHHHHHHcCCHHHHHHhcCCCC------ccchhHHHHH
Q 037562          405 QVRPALPVLAQLIRSNDEEVLTDACWALS-YLSD----GTNDKVQAVIEAGVYPRLVELLGHSS------SSVLTPALRT  473 (670)
Q Consensus       405 ~~~~~i~~L~~lL~~~~~~v~~~al~~L~-~l~~----~~~~~~~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~~  473 (670)
                      .+.+.++.|+.+-+.-+.++...++..+. ..+.    ..++....+.+ .++.....++.+++      .+-+..|.++
T Consensus       539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi  617 (970)
T COG5656         539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI  617 (970)
T ss_pred             hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence            22344444544444444444444444332 1221    11122221221 23334444444431      1223445555


Q ss_pred             HHHhhc-----CC-chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037562          474 IRNIVK-----GD-DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT  547 (670)
Q Consensus       474 L~~l~~-----~~-~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~  547 (670)
                      |..+..     .+ +...+ -.+....|.+--.+++. -.++-.+|+..+-+.+....+.-  -+.-|+.+.+.+++.+.
T Consensus       618 L~T~~smiLSlen~p~vLk-~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~  693 (970)
T COG5656         618 LRTIESMILSLENRPLVLK-YLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDE  693 (970)
T ss_pred             HHHHHHHHHhcccchHHHH-HHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhccccc
Confidence            544432     11 11111 22345566666667777 67777788888777654322211  11224555555666555


Q ss_pred             Ch-hHHHHHHHHHHHhcCCCC
Q 037562          548 EF-DTKKEAAWAISNATKFGT  567 (670)
Q Consensus       548 ~~-~v~~~a~~aL~~l~~~~~  567 (670)
                      .. .....+.-++.|+...|.
T Consensus       694 ~t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         694 ITAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             chhhhHHHHHHHHHHHHHhCc
Confidence            53 677889999999987653

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.55  E-value=0.29  Score=46.03  Aligned_cols=103  Identities=24%  Similarity=0.255  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHH
Q 037562          551 TKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV  629 (670)
Q Consensus       551 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  629 (670)
                      ....|...|.-++.- .|.....+-+...++.|++++ ....+.++.+++.++..++-+....             ...|
T Consensus       107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F  172 (257)
T PF08045_consen  107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF  172 (257)
T ss_pred             HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence            455667777777766 567777888999999999999 4567889999999999888765542             4589


Q ss_pred             HHhchHHHHHHhhc--CCCHHHHHHHHHHHHHhcCCcccc
Q 037562          630 EEAEGLEKIENLQS--HDDNGISEKAVEILETYWSSRVIG  667 (670)
Q Consensus       630 ~~~g~~~~l~~L~~--~~~~~v~~~a~~~l~~~~~~~~~~  667 (670)
                      ++.+|+..+..+..  +.+.+++-+....+--|+.++...
T Consensus       173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~  212 (257)
T PF08045_consen  173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPS  212 (257)
T ss_pred             HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCC
Confidence            99999999988854  457789999999999888766554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.44  E-value=0.091  Score=46.03  Aligned_cols=144  Identities=16%  Similarity=0.172  Sum_probs=97.8

Q ss_pred             HHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562          412 VLAQLIR--SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII  489 (670)
Q Consensus       412 ~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  489 (670)
                      .++..+.  ...++++..+.-++..+.+.    ...-....+-..+...+..++.+-...++.++..+-...++....++
T Consensus         7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~   82 (157)
T PF11701_consen    7 TLLTSLDMLRQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF   82 (157)
T ss_dssp             HHHHHHHCTTTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred             HHHHHhcccCCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence            3444443  35678898888888887422    22222223335566666666666788888899988888777766666


Q ss_pred             -hCCChHHHHHhhc--cCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChh-HHHHHHHHHHHh
Q 037562          490 -NCGALPYFLDMLV--HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFD-TKKEAAWAISNA  562 (670)
Q Consensus       490 -~~~~~~~L~~~l~--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-v~~~a~~aL~~l  562 (670)
                       ..|+.+.+..++.  .. +..++..++.++..-|.  .+.....+...+++.|.+.++ +++.. +|..|+-+|+.+
T Consensus        83 ~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   83 LSEGFLESLLPLASRKSK-DRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             CTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence             6788899999988  55 78888888888877755  333444455568899999986 45555 888888887753

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.37  E-value=0.75  Score=48.76  Aligned_cols=107  Identities=15%  Similarity=0.126  Sum_probs=78.9

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 037562          279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC  358 (670)
Q Consensus       279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  358 (670)
                      -.|.+..+++...+.+ ..||..++..|..+.. ....++.-+-.+....+..-+.+..+.||.+|+.+|+.+=.+..+-
T Consensus        83 V~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   83 VAGTFYHLLRGTESKD-KKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            3456777777778888 7999999999999987 3333333333466777777788888999999999999996432211


Q ss_pred             HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562          359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLF  392 (670)
Q Consensus       359 ~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~  392 (670)
                           +..++..+..+++++++++|++.|+..+.
T Consensus       161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                 23357788889989999999998765544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.34  E-value=0.1  Score=45.73  Aligned_cols=143  Identities=15%  Similarity=0.141  Sum_probs=98.3

Q ss_pred             HHHHHhcC--CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHH
Q 037562          453 PRLVELLG--HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA  530 (670)
Q Consensus       453 ~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  530 (670)
                      ..++..+.  ...+++|..|.-++..+-.   . .+.-....+-+.+-..+... +.+-...+..++..+-.+.++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~-~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLLD---A-AREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHHH---H-hHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34444444  3566799999999988842   1 22222223444555556555 6667778888999988888887777


Q ss_pred             HH-hcCChHHHHHHhh--cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChH-HHHHHHHHHH
Q 037562          531 VI-DSGLIGPIVNLLQ--NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPK-IVTVCLEGLE  603 (670)
Q Consensus       531 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-v~~~a~~~l~  603 (670)
                      +. ..|+++.++.+..  .++..++..++.+|..-+.  +... ...+...+++.|.++++ ++++. ++..|+-+|.
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            76 6788999999998  7788999999999988776  4444 44455568999999995 45555 6777666554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.33  E-value=0.15  Score=37.47  Aligned_cols=66  Identities=20%  Similarity=0.287  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 037562          510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREG  578 (670)
Q Consensus       510 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  578 (670)
                      .+.|.|++++++. ++.-...+.+.++++.++++.+ ++...+|-.|.++|+-++.  +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            5789999999976 4556666777899999999988 5567999999999999998  667777766654

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.17  E-value=4.7  Score=47.27  Aligned_cols=93  Identities=9%  Similarity=0.076  Sum_probs=62.0

Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562          466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ  545 (670)
Q Consensus       466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~  545 (670)
                      ++...-..|..+-...+..     -.+++|.|-.-|.+. +..+|..|...++.+......... =-........+.-+.
T Consensus       238 ~~~~~he~i~~L~~~~p~l-----l~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~  310 (1266)
T KOG1525|consen  238 LKIKYHELILELWRIAPQL-----LLAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFN  310 (1266)
T ss_pred             hhhHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhc
Confidence            3444444454444433222     137899999999999 999999999999999764332221 001224555566666


Q ss_pred             cCChhHHHHHHHHHHHhcCC
Q 037562          546 NTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       546 ~~~~~v~~~a~~aL~~l~~~  565 (670)
                      +.+.+||..++....++...
T Consensus       311 D~~~~vR~~~v~~~~~~l~~  330 (1266)
T KOG1525|consen  311 DISVEVRMECVESIKQCLLN  330 (1266)
T ss_pred             cCChhhhhhHHHHhHHHHhc
Confidence            78899999999998888775

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.10  E-value=0.39  Score=45.19  Aligned_cols=100  Identities=11%  Similarity=0.079  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc
Q 037562          509 IKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL  587 (670)
Q Consensus       509 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll  587 (670)
                      ....|...|.-++--.+..+..+.+...+..+++++. ...+.++..++.+|..+... ++.+.+.|-+.+|+..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld-~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD-SPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc-ChHHHHHHHHhCCHHHHHHHH
Confidence            3445667777777766777888889999999999995 56789999999999998887 778888999999999999999


Q ss_pred             cCC--ChHHHHHHHHHHHHHHHhh
Q 037562          588 LCA--DPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       588 ~~~--~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++.  +.+++.++++.|.-++...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            765  5679989998887766543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.06  E-value=0.5  Score=50.16  Aligned_cols=190  Identities=9%  Similarity=0.084  Sum_probs=133.2

Q ss_pred             HHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH
Q 037562          447 IEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE  526 (670)
Q Consensus       447 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~  526 (670)
                      +..++++.+++++...+..+|..-+.-+-+...   ...+..++..+++.+..-+.+. ++.+|+.....+..++..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhch
Confidence            445899999999999998888877666665554   3455577888999999999999 999999999999988763111


Q ss_pred             HHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHH
Q 037562          527 QIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENIL  606 (670)
Q Consensus       527 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~  606 (670)
                      .   -++...+..+-+.-.+++..+|.+...+++.++....+..    .+.-.+.+..+.++++-..-|.++..++..-.
T Consensus       403 ~---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  403 R---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             h---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence            1   1233344445544446678899999999999987643332    22234555666777777778888877776544


Q ss_pred             HhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562          607 KVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSS  663 (670)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~  663 (670)
                      ......           ..+..     .++.+.-+.-+++..++..|.+.++.|++.
T Consensus       476 ~~~~~~-----------~va~k-----Ilp~l~pl~vd~e~~vr~~a~~~i~~fl~k  516 (690)
T KOG1243|consen  476 EYFDQS-----------EVANK-----ILPSLVPLTVDPEKTVRDTAEKAIRQFLEK  516 (690)
T ss_pred             cccchh-----------hhhhh-----ccccccccccCcccchhhHHHHHHHHHHhh
Confidence            332221           12222     367777778888899999999999988753

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.05  E-value=3.5  Score=42.60  Aligned_cols=158  Identities=13%  Similarity=0.094  Sum_probs=114.9

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHcCCChhh
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD---YPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      ...+.+.+.+++...+..|...+..+..+  .....+++...++..|.+++.+.+   ..++...+++++..+..+.. .
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v  161 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V  161 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence            46778888889988898899999888554  667888999999999999998765   24677777777777766432 1


Q ss_pred             HHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562          317 TKVVIDHGAVPIFVKLLA--SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF  394 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  394 (670)
                      .-..+...++.....+..  ..+..+-..|+..|-++...++..+..+.+.--+..++..+ +..+..++..|...+..+
T Consensus       162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence            111222233444444432  25567778899999999888887888888888899999999 666777877777777777


Q ss_pred             hcCCCCC
Q 037562          395 CRGKPQP  401 (670)
Q Consensus       395 ~~~~~~~  401 (670)
                      ....+..
T Consensus       241 ~~~a~~~  247 (713)
T KOG2999|consen  241 FRKAPDD  247 (713)
T ss_pred             HhhCChH
Confidence            7665443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.21  Score=51.23  Aligned_cols=154  Identities=21%  Similarity=0.298  Sum_probs=104.7

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562          285 RFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LASPSVDVRKQTVWALGNVAGDSPRCRDLVL  363 (670)
Q Consensus       285 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  363 (670)
                      .+-+++.+.+ +-+|...+..++.--.+..       +.|++..++.. .++.+.++|+.|+.+|+-+|.+++.      
T Consensus       520 ~I~ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------  585 (926)
T COG5116         520 YINELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------  585 (926)
T ss_pred             HHHHHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc------
Confidence            3445666666 6777766665544322221       24677888887 6779999999999999999977654      


Q ss_pred             hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 037562          364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKV  443 (670)
Q Consensus       364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~  443 (670)
                         .++..+++|.++.+..++...+.+|.-.|.+...      ..++..|-.+..+.+.-||..|+-+++-+.....+..
T Consensus       586 ---~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         586 ---LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             ---hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence               4777888888888999999888999888877522      3455667777888888899999988887763322221


Q ss_pred             HHHHHcCCHHHHHHhcCCC
Q 037562          444 QAVIEAGVYPRLVELLGHS  462 (670)
Q Consensus       444 ~~~~~~~~i~~L~~lL~~~  462 (670)
                      ..-+. ++...+.+++.+.
T Consensus       657 np~v~-~I~k~f~~vI~~K  674 (926)
T COG5116         657 NPNVK-RIIKKFNRVIVDK  674 (926)
T ss_pred             ChhHH-HHHHHHHHHHhhh
Confidence            11111 4455555555543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.02  E-value=4.1  Score=45.46  Aligned_cols=241  Identities=17%  Similarity=0.213  Sum_probs=143.9

Q ss_pred             hhhHHHHHHhhcc-----CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC----CCC----ccchhHHHHH
Q 037562          407 RPALPVLAQLIRS-----NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG----HSS----SSVLTPALRT  473 (670)
Q Consensus       407 ~~~i~~L~~lL~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~----~~v~~~a~~~  473 (670)
                      .|++..++.++.+     .+......++..|...+.. ..+.+.+++.|+++.|+..+.    .+.    ..+.+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            4566667766653     2345666677777777655 456677888999998888874    333    5677777777


Q ss_pred             HHHhhcCCchh-hH---HHHhC--------CChHHHHHhhccCC---chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChH
Q 037562          474 IRNIVKGDDFQ-TQ---CIINC--------GALPYFLDMLVHNH---EESIKKEVSWIISNITCGNREQIQAVIDSGLIG  538 (670)
Q Consensus       474 L~~l~~~~~~~-~~---~l~~~--------~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~  538 (670)
                      +..+....... ..   .....        ..+..+++.+.+..   ++.+....+.+|.+++.++++..+.+++.  +.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence            76665432211 10   00111        12666777766542   67889999999999999999888877762  22


Q ss_pred             HHHHHhh--cCChhHHHHHHHHHHHhcCCC-----CHHHHHHHHHcCCcHHHHhhccCCCh--------HH--------H
Q 037562          539 PIVNLLQ--NTEFDTKKEAAWAISNATKFG-----THEQIKHLVREGCVKPLCDLLLCADP--------KI--------V  595 (670)
Q Consensus       539 ~L~~ll~--~~~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~~~--------~v--------~  595 (670)
                      ..+++=+  .....--...+..++.++..-     .......+++.|++...++++...-|        +-        .
T Consensus       273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            2223211  111111122244555554421     24566778899999988888843322        21        2


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCc
Q 037562          596 TVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS-HDDNGISEKAVEILETYWSSR  664 (670)
Q Consensus       596 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~~l~~~~~~~  664 (670)
                      ..++..|.-+......              .+.+...+++..+-.|.. +.+..|-..|..+|+.+-..+
T Consensus       353 p~iL~lL~GLa~gh~~--------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  353 PYILRLLRGLARGHEP--------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HHHHHHHHHHHhcCHH--------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            3345555554443222              233445677877777744 446778999999998776544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=94.94  E-value=0.046  Score=56.36  Aligned_cols=163  Identities=20%  Similarity=0.208  Sum_probs=95.8

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      .-++|++++- +|.++.....-.+++|+++++..- .|..+|...+...+|++|.+.+- .+.++ ....+..+|.|++|
T Consensus        79 ~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N-~I~sv-~se~L~~l~alrsl  154 (873)
T KOG4194|consen   79 QTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHN-LISSV-TSEELSALPALRSL  154 (873)
T ss_pred             ceeeeecccc-ccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeecc-ccccc-cHHHHHhHhhhhhh
Confidence            4455777653 455554443457899999988664 57777776666777999988753 22232 22456678999999


Q ss_pred             ccccccccceecccccccccccccccc---ccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcC-C
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFR---ELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELS-T  178 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~-~  178 (670)
                      +++.- .+.++..          ..||   ++++|.+.+ ..++.+..+ .+..+.+|-.|.+.. ..+.++|..... +
T Consensus       155 DLSrN-~is~i~~----------~sfp~~~ni~~L~La~-N~It~l~~~-~F~~lnsL~tlkLsr-NrittLp~r~Fk~L  220 (873)
T KOG4194|consen  155 DLSRN-LISEIPK----------PSFPAKVNIKKLNLAS-NRITTLETG-HFDSLNSLLTLKLSR-NRITTLPQRSFKRL  220 (873)
T ss_pred             hhhhc-hhhcccC----------CCCCCCCCceEEeecc-ccccccccc-cccccchheeeeccc-CcccccCHHHhhhc
Confidence            88653 2333321          2344   377776654 334444333 334455666666664 345666665443 7


Q ss_pred             CCccceeeeecc-CCccceeeccchh
Q 037562          179 PNLHKVQLSRWD-GEEHWIWVHDLNT  203 (670)
Q Consensus       179 ~~L~~l~i~~~~-~~~~~~~~~~~~~  203 (670)
                      |+|+.|++.+.. ..-+|...+.++.
T Consensus       221 ~~L~~LdLnrN~irive~ltFqgL~S  246 (873)
T KOG4194|consen  221 PKLESLDLNRNRIRIVEGLTFQGLPS  246 (873)
T ss_pred             chhhhhhccccceeeehhhhhcCchh
Confidence            777777764322 2234666666665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.93  E-value=0.0031  Score=64.95  Aligned_cols=147  Identities=16%  Similarity=0.173  Sum_probs=77.3

Q ss_pred             cccEEEeccC--cCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhccccc
Q 037562           23 EVKISEAYNC--YRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        23 ~L~~L~i~~c--~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      +|+.|.+-+.  .+|+++|.. .....++-.|++++- +++++|.+. .++..|-.|++++- +|+.+  ||...+|..|
T Consensus       101 ~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~L--PPQ~RRL~~L  175 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEML--PPQIRRLSML  175 (1255)
T ss_pred             ccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhc--CHHHHHHhhh
Confidence            5555554443  357777754 245566777777654 466666542 23444555555543 56655  3556677777


Q ss_pred             ceeccccccccceeccccccccccccccccccccccccccccc----cccccCCcccCCCCccEEeEecCCCccccccCC
Q 037562          100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNL----ISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE  175 (670)
Q Consensus       100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~  175 (670)
                      ++|.+++-|-.-           ..+..+|+++.|..-.+.+-    -.++..  ...+.+|..++++ |.+|..+|+..
T Consensus       176 qtL~Ls~NPL~h-----------fQLrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS-~N~Lp~vPecl  241 (1255)
T KOG0444|consen  176 QTLKLSNNPLNH-----------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLS-ENNLPIVPECL  241 (1255)
T ss_pred             hhhhcCCChhhH-----------HHHhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhcccc-ccCCCcchHHH
Confidence            777777655110           01122333333333322222    122221  2234455555554 56677777766


Q ss_pred             cCCCCccceeeee
Q 037562          176 LSTPNLHKVQLSR  188 (670)
Q Consensus       176 ~~~~~L~~l~i~~  188 (670)
                      ..+++|+.|.+++
T Consensus       242 y~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhhhheeccCc
Confidence            6677777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.93  E-value=0.0032  Score=55.57  Aligned_cols=63  Identities=24%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             ccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc-CCcCCCCccceeeeecc
Q 037562          128 FRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG-GELSTPNLHKVQLSRWD  190 (670)
Q Consensus       128 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~-~~~~~~~L~~l~i~~~~  190 (670)
                      +++++.|.+.+|..+..||.+-...-.|+|+.|+|++||.++..-- +...+++|+.|.+.+.+
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            4455555555555555555432223445555555555555442211 11234555555554333

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.92  E-value=0.61  Score=51.75  Aligned_cols=189  Identities=12%  Similarity=0.061  Sum_probs=133.4

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh
Q 037562          325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN  404 (670)
Q Consensus       325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  404 (670)
                      +-+.+..-+.+++..-|..|+..+........ ........|.+..++.....+.+..+...++.+|..++..-......
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence            44555566667778888888888877765443 11111122345556666667788888889999999999876555555


Q ss_pred             hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-h
Q 037562          405 QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD-F  483 (670)
Q Consensus       405 ~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~  483 (670)
                      ......|.++.-+......++..+..++-.++....       -...++.+...+.+.++.++..+...+.......+ .
T Consensus       333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            667888999999988888888887777766554211       12466888899999999999998887777765443 2


Q ss_pred             hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          484 QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       484 ~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      ....-.-.+.++.++....+. +.+||..|..+++.+..
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            111122235788888888888 99999999999888765

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.86  E-value=0.039  Score=32.93  Aligned_cols=28  Identities=29%  Similarity=0.431  Sum_probs=25.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIAS  311 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  311 (670)
                      +|.+++++++++ ++||..|+.+|+.++.
T Consensus         2 lp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            688999999999 8999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.79  E-value=0.049  Score=32.51  Aligned_cols=29  Identities=31%  Similarity=0.439  Sum_probs=25.5

Q ss_pred             hHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562          409 ALPVLAQLIRSNDEEVLTDACWALSYLSD  437 (670)
Q Consensus       409 ~i~~L~~lL~~~~~~v~~~al~~L~~l~~  437 (670)
                      ++|.+.+++++++++||..|+.+++.++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=94.72  E-value=8.8  Score=42.68  Aligned_cols=131  Identities=11%  Similarity=0.129  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHh
Q 037562          507 ESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCD  585 (670)
Q Consensus       507 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~  585 (670)
                      +.++..+..+++++|.......     ...+|.|++-|+ +....+|.+.+.|.+.++.+.     ..+.+ ..+|.+..
T Consensus       945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d-~YiP~I~~ 1013 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTD-RYIPMIAA 1013 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHH-HhhHHHHH
Confidence            4567788889999988655533     346788998888 556788888888888888741     11222 37999999


Q ss_pred             hccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCcc
Q 037562          586 LLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRV  665 (670)
Q Consensus       586 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~  665 (670)
                      .|.++++-||.+++-.|.++++.+-.-=+           -..|     +.-+.. .-+.+++++..|.-.+...+..++
T Consensus      1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~-----------G~Lf-----~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVKWN-----------GELF-----IRFMLA-LLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred             HhcCchHHHHHHHHHHHHHHHhhhhhhcc-----------hhhH-----HHHHHH-HcccCHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999875421100           0011     222222 234567777777766666555443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.67  E-value=0.36  Score=42.35  Aligned_cols=146  Identities=8%  Similarity=0.035  Sum_probs=87.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      .++.|+.+++.+....+|..|+++++.+..-+|-..+.+....  +.-.  -...+.......... .+....    .+.
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~~-~~~~~~----~ee   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLPM-MGISPS----SEE   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHhh-ccCCCc----hHH
Confidence            5677888998876589999999999999986665544332211  1000  011111222211111 111111    122


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS  436 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~  436 (670)
                      ..-..++..|++.+++..-..-...+..++.++..............++|.++..+++.++..++....-|+.+.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            233336788888885544444455677777777755445556666889999999999777788877776666654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.57  E-value=3.6  Score=38.87  Aligned_cols=202  Identities=19%  Similarity=0.169  Sum_probs=117.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV  362 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  362 (670)
                      ++.++.-+....+++.+...+.+|..++.++.....     -+++.+..+...+....+..+.+.+..+-..++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            445555344444489999999999999985422222     235677777777777777777788877765544321   


Q ss_pred             HhcCChHHHHHHh---------cccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh-ccCChhHHHHHHHHH
Q 037562          363 LSQGALIPLLAEL---------NENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI-RSNDEEVLTDACWAL  432 (670)
Q Consensus       363 ~~~~~i~~Ll~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~al~~L  432 (670)
                         +.+..++...         ..+...+.....+.++..+|...|.    .....++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444431         0112224444556778888887766    4456778888888 788899999999999


Q ss_pred             HHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCchh-hHHHHhCCChHHHHHhhccC
Q 037562          433 SYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDDFQ-TQCIINCGALPYFLDMLVHN  504 (670)
Q Consensus       433 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~~~~L~~~l~~~  504 (670)
                      ..++...--.   +.  .....+.+-++.+ .+.+....+..+..+....-+. ........++..+.++..+.
T Consensus       147 ~~Lc~~~vvd---~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEVVD---FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhhcc---HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            9998432211   11  2334455555333 2334443333333333322111 11223445666666766666

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.56  E-value=1.7  Score=45.17  Aligned_cols=110  Identities=17%  Similarity=0.163  Sum_probs=80.8

Q ss_pred             hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 037562          403 FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD  482 (670)
Q Consensus       403 ~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  482 (670)
                      ...+.+.+-.++..+.+.|..||..++..++.++..-.+... .+..|++..+..-+-+..+.||..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            455677888888888899999999999999998865443333 3444788888888888888999999999998864332


Q ss_pred             hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562          483 FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS  518 (670)
Q Consensus       483 ~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~  518 (670)
                      ....     .....+...++++++.+||+.|...+.
T Consensus       165 neen-----~~~n~l~~~vqnDPS~EVRr~allni~  195 (885)
T COG5218         165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNIS  195 (885)
T ss_pred             ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence            2111     234467788888778999988765443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.42  E-value=0.034  Score=36.43  Aligned_cols=15  Identities=13%  Similarity=0.228  Sum_probs=6.9

Q ss_pred             hhcccccceeccccc
Q 037562           93 AKTLVRLRYMEIESC  107 (670)
Q Consensus        93 ~~~l~~L~~L~i~~c  107 (670)
                      +.+|++|+.|+++++
T Consensus        20 l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen   20 LSNLPNLETLNLSNN   34 (44)
T ss_dssp             GTTCTTSSEEEETSS
T ss_pred             HhCCCCCCEEEecCC
Confidence            344444444444444

...

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.30  E-value=2.6  Score=42.86  Aligned_cols=191  Identities=17%  Similarity=0.256  Sum_probs=117.8

Q ss_pred             HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH---hh--hcCCCCCCh-hhhhhhHHHHHHh
Q 037562          343 QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLF---NF--CRGKPQPPF-NQVRPALPVLAQL  416 (670)
Q Consensus       343 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~---~l--~~~~~~~~~-~~~~~~i~~L~~l  416 (670)
                      .|+..|-.+....+..-..+.+.+++..++..+...    +    ..++.   +-  ....+.... ....      ..-
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~E----v----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~   68 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYE----V----DFALEENKNEEAGSGIPPEYKESSVD------GYS   68 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHH----H----HHHHhcccccCCCCCCCCCccccccc------ccc
Confidence            466677777766666667778889999999998322    1    11111   11  111110000 0000      000


Q ss_pred             hccCChhHHHHHHHHHHHhcc---CChHHHHHHHH-cCCHHHHHHhcCCCC---ccchhHHHHHHHHhhcCCchhhHHHH
Q 037562          417 IRSNDEEVLTDACWALSYLSD---GTNDKVQAVIE-AGVYPRLVELLGHSS---SSVLTPALRTIRNIVKGDDFQTQCII  489 (670)
Q Consensus       417 L~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~-~~~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~  489 (670)
                      +...........++.+..+..   ......+.+.+ ..+...|...+++..   +.+-..|+.++..+..+.|.....+.
T Consensus        69 i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~  148 (379)
T PF06025_consen   69 ISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQ  148 (379)
T ss_pred             cCHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHH
Confidence            000011223333344444333   33344455666 556677777777753   46888899999999999998888888


Q ss_pred             hCCChHHHHHhhc-cC--CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC
Q 037562          490 NCGALPYFLDMLV-HN--HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTE  548 (670)
Q Consensus       490 ~~~~~~~L~~~l~-~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~  548 (670)
                      +.|+.+.+++.+. ..  ++.++....-.+++.+|-. ....+.+.+.+.++.+++++.+++
T Consensus       149 e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  149 EAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence            9999999999998 32  2556666666777777664 666788888999999999988654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.19  E-value=0.0086  Score=64.90  Aligned_cols=110  Identities=25%  Similarity=0.373  Sum_probs=62.3

Q ss_pred             cCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccccccccccccccccc
Q 037562           64 VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLI  143 (670)
Q Consensus        64 ~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  143 (670)
                      ++-..+|.+||.|++++- .|.. ||...+.+|+.||+|.++|- +|+.++.        ..-.+++|++|..++ ..|.
T Consensus       376 ~p~l~~~~hLKVLhLsyN-rL~~-fpas~~~kle~LeeL~LSGN-kL~~Lp~--------tva~~~~L~tL~ahs-N~l~  443 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYN-RLNS-FPASKLRKLEELEELNLSGN-KLTTLPD--------TVANLGRLHTLRAHS-NQLL  443 (1081)
T ss_pred             hhhhccccceeeeeeccc-cccc-CCHHHHhchHHhHHHhcccc-hhhhhhH--------HHHhhhhhHHHhhcC-Ccee
Confidence            344566888888888754 4444 34456778888888888764 3555432        122355555554432 2233


Q ss_pred             ccccCCcccCCCCccEEeEecCCCcc--ccccCCcCCCCccceeeeecc
Q 037562          144 SFCSGNCAFTFPSLEILVVNYCPNMK--IFSGGELSTPNLHKVQLSRWD  190 (670)
Q Consensus       144 ~~~~~~~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~i~~~~  190 (670)
                      .+|   +...+|.|+.++++ |.+|.  .+|... +.|+|++|++++..
T Consensus       444 ~fP---e~~~l~qL~~lDlS-~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  444 SFP---ELAQLPQLKVLDLS-CNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             ech---hhhhcCcceEEecc-cchhhhhhhhhhC-CCcccceeeccCCc
Confidence            333   24456667777765 56665  233322 23677777765544

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=93.97  E-value=6.2  Score=37.96  Aligned_cols=205  Identities=12%  Similarity=0.107  Sum_probs=136.7

Q ss_pred             HHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh----hHHHHhCCChHHHHHhhccCCc-hhHHHHHHHHH
Q 037562          443 VQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ----TQCIINCGALPYFLDMLVHNHE-ESIKKEVSWII  517 (670)
Q Consensus       443 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~l~~~~~~~~L~~~l~~~~~-~~v~~~a~~~L  517 (670)
                      .+.+.++|.+..++..+...+.+-+..++.+..++-......    ...+. + -.+.+..++....+ +++.-.+...+
T Consensus        72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~-t-~~e~~~~lv~~~~~~~~iaL~cg~ml  149 (342)
T KOG1566|consen   72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLE-T-NPEILDNLVKGYENTPEIALTCGNML  149 (342)
T ss_pred             HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHH-h-CHHHHHHHHhhhccchHHHHHHHHHH
Confidence            355788899999999999999999999999999987543221    22222 1 12233333333312 44444444444


Q ss_pred             HHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC----cHHHHhhccCCChH
Q 037562          518 SNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC----VKPLCDLLLCADPK  593 (670)
Q Consensus       518 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~  593 (670)
                      ....+ .+...+.+....-+......++.+..++...|..+...+.... ......+...+.    .+.-..++.+++.-
T Consensus       150 rEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~H-k~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv  227 (342)
T KOG1566|consen  150 RECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRH-KSVVAEFLIRNYDNFFAEVYEKLLRSENYV  227 (342)
T ss_pred             HHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHh-HHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence            44433 3556667777778888888888889999999999998887763 333333343333    34466688999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          594 IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       594 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ++..++++++.++....+..          .-.+.+..-..+..+..|+.+++..++-.|-.+-..+.
T Consensus       228 tkrqs~kllg~llldr~N~~----------~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfv  285 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSA----------VMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFV  285 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHH----------HHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHh
Confidence            99999999999887654432          23444554556677778888888888888776655443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=93.93  E-value=0.77  Score=50.99  Aligned_cols=193  Identities=15%  Similarity=0.107  Sum_probs=129.1

Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562          408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       408 ~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~  486 (670)
                      ..-+.+..-+.+.+..-+..++..+............ -...+.+..++.. +.+.+..+...|+.+|..++........
T Consensus       253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            3334455555577777888888877776644331111 1111333333333 3456777889999999999876544333


Q ss_pred             HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562          487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG  566 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  566 (670)
                       -...+.++.+++.+... ...++..+..++-.++...+-       ..+++.+...+.++++.++..+...+.......
T Consensus       332 -~~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~  402 (815)
T KOG1820|consen  332 -KYAKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKL  402 (815)
T ss_pred             -HHHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence             22346888999999888 888888877777776553221       235677888899999999999888888877653


Q ss_pred             CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562          567 THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       567 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      ++.....-.-.+.++.++....+.+.+||.++..++..+++...
T Consensus       403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G  446 (815)
T KOG1820|consen  403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG  446 (815)
T ss_pred             CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence            32222222234578888888899999999999999998886543

>PLN03150 hypothetical protein; Provisional

Probab=93.91  E-value=0.09  Score=57.77  Aligned_cols=57  Identities=7%  Similarity=0.036  Sum_probs=24.0

Q ss_pred             CcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccc
Q 037562           49 LVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC  107 (670)
Q Consensus        49 L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  107 (670)
                      +..|++.++.--..+|..+..+++|+.|+++++. +.... +..+..+++|+.|+++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~i-P~~~~~l~~L~~LdLs~N  476 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNI-PPSLGSITSLEVLDLSYN  476 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCc-ccCcC-ChHHhCCCCCCEEECCCC
Confidence            3444444432212233334445555555555542 22111 123445555555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.78  E-value=0.069  Score=34.96  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             CCCcEEEEecCCCCccccCCCccccccceeeeccccccccc
Q 037562           47 NNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIV   87 (670)
Q Consensus        47 ~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l   87 (670)
                      ++|++|+++++ ++..+++.+..+++|+.|+++++ .++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            47888998887 47777776788899999999988 45544

...

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.71  E-value=5.6  Score=46.67  Aligned_cols=148  Identities=15%  Similarity=0.092  Sum_probs=93.8

Q ss_pred             CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHH
Q 037562          450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ  529 (670)
Q Consensus       450 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~  529 (670)
                      ++++.|..-|.+++..+|..|...+|.+......... =-.......++.-+.+. +.+||.+++....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7889999999999999999999999999875433221 00123455566666777 899999999999888776565332


Q ss_pred             HHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 037562          530 AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       530 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  608 (670)
                      ...   ....+-..  +.|++++....-++..+..   ......+... .+..+.+-+.+....||..|+..+..+++.
T Consensus       337 ~~~---~~~~l~~~--~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALRER--DLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHHhh--cCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            221   12222222  3344444333322222221   1122222233 566666777889999999999999988874

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=93.66  E-value=7  Score=37.54  Aligned_cols=223  Identities=13%  Similarity=0.086  Sum_probs=132.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-cCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562          328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-NANLSMLRTATWTLFNFCRGKPQPPFNQV  406 (670)
Q Consensus       328 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  406 (670)
                      .|-..|.++++.+|..|+..|+.+...-+..   ......+..++....+ -.|......++.++..+..... ......
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPESA   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhhH
Confidence            4556778899999999999999987554421   1222235555555422 2345555555666666664432 112222


Q ss_pred             hhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCch
Q 037562          407 RPALPVLAQLIR--SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDF  483 (670)
Q Consensus       407 ~~~i~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~  483 (670)
                      ..++..+.+-.+  +--...|..+...+..+..+.....+.+ ..+++..++..+.. .||+-...+...+..+....+.
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            333333333222  2246778888888888876644333222 23677778887776 5777777777777777654431


Q ss_pred             hhHHHHhCCChHHHHHhhcc--------CC-ch--hHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHH
Q 037562          484 QTQCIINCGALPYFLDMLVH--------NH-EE--SIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTK  552 (670)
Q Consensus       484 ~~~~l~~~~~~~~L~~~l~~--------~~-~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  552 (670)
                             ....+-+.+.+..        ++ ++  -.++.-..+|.+....++..     ..-.+|.|++-|.++...++
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence                   2233334443321        11 22  23444555666655554542     23468899999999999999


Q ss_pred             HHHHHHHHHhcCCCC
Q 037562          553 KEAAWAISNATKFGT  567 (670)
Q Consensus       553 ~~a~~aL~~l~~~~~  567 (670)
                      ..++.+|..++..-.
T Consensus       226 ~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  226 LDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHHHCC
Confidence            999999999877533

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.51  E-value=0.78  Score=48.44  Aligned_cols=167  Identities=13%  Similarity=0.153  Sum_probs=114.6

Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHH
Q 037562          420 NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFL  498 (670)
Q Consensus       420 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~  498 (670)
                      +|++++..|.-+|..+.--+.....     .-+|.++..+. +++|.+|.+|.-.++.++......+.     ..-..|.
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLy  977 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLY  977 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHH
Confidence            5788998888888876543333222     34678888887 79999999999999988764433333     2345677


Q ss_pred             HhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 037562          499 DMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREG  578 (670)
Q Consensus       499 ~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  578 (670)
                      .-|.+. +..||+.+..++.++.....     +.-.|-++.+..++.++|.++...|-..+..++...+ ..     -+|
T Consensus       978 rrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN-t~-----yn~ 1045 (1128)
T COG5098         978 RRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN-TM-----YNG 1045 (1128)
T ss_pred             HHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc-ch-----hhh
Confidence            788888 99999999999999866432     1235778999999999999999999999999998632 21     233


Q ss_pred             CcHHHHhhcc---CCChHHHHHHHHHHHHHHHhh
Q 037562          579 CVKPLCDLLL---CADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       579 ~i~~L~~ll~---~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      .++....+-.   .++.+ -+.+++.|..++...
T Consensus      1046 fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ke 1078 (1128)
T COG5098        1046 FIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKE 1078 (1128)
T ss_pred             hHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHH
Confidence            3433333331   12222 345566666665543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.49  E-value=0.41  Score=35.19  Aligned_cols=67  Identities=18%  Similarity=0.103  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 037562          255 QLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHG  324 (670)
Q Consensus       255 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  324 (670)
                      ...|+|++.++++.  +.....+.+.++++.++++..+.+...+|-.|..+|+-++. +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            46799999999775  45556666789999999999876657999999999999998 777776665544

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.31  E-value=7.4  Score=36.76  Aligned_cols=139  Identities=22%  Similarity=0.139  Sum_probs=88.9

Q ss_pred             HHHHH-hhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562          411 PVLAQ-LIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII  489 (670)
Q Consensus       411 ~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  489 (670)
                      +.+.. +-+..+++.+...+.+|..++.+......     -+++.+..+...+....+..+.+.+..+...++...    
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            33443 45567899999999999999977521112     244566677777766666677777777766544322    


Q ss_pred             hCCChHHHHHh---------hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHh-hcCChhHHHHHHHHH
Q 037562          490 NCGALPYFLDM---------LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL-QNTEFDTKKEAAWAI  559 (670)
Q Consensus       490 ~~~~~~~L~~~---------l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL  559 (670)
                        +.+..++..         .......+.....+..+..+|...++..     ..+++.+..++ ++.++.++..++.++
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence              222322222         1111134455555678888887666622     23577788888 778888999999999


Q ss_pred             HHhcCC
Q 037562          560 SNATKF  565 (670)
Q Consensus       560 ~~l~~~  565 (670)
                      ..++..
T Consensus       147 ~~Lc~~  152 (234)
T PF12530_consen  147 APLCEA  152 (234)
T ss_pred             HHHHHH
Confidence            999854

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.30  E-value=0.056  Score=27.05  Aligned_cols=17  Identities=18%  Similarity=0.305  Sum_probs=9.3

Q ss_pred             CCccEEeEecCCCccccc
Q 037562          155 PSLEILVVNYCPNMKIFS  172 (670)
Q Consensus       155 ~~L~~L~i~~C~~l~~~p  172 (670)
                      |+|+.|++++|. |+.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            467777777776 66665

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.29  E-value=0.055  Score=50.91  Aligned_cols=151  Identities=21%  Similarity=0.251  Sum_probs=91.8

Q ss_pred             ccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccc
Q 037562           44 SVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQ  122 (670)
Q Consensus        44 ~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  122 (670)
                      ..+|.|+.|++ +|..|.+..... ....+|+.|.+.|-. |..-...+.+..+|.+++|++++- +++.+-..++.   
T Consensus        94 e~lP~l~~LNl-s~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c---  167 (418)
T KOG2982|consen   94 EQLPALTTLNL-SCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNC---  167 (418)
T ss_pred             hcCccceEeec-cCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccc-hhhhhcccccc---
Confidence            46899999998 566665544333 245689999887752 211111234556788888877643 22222211111   


Q ss_pred             cccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccc--cCCcCCCCccceeeeeccCCccceeecc
Q 037562          123 DEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFS--GGELSTPNLHKVQLSRWDGEEHWIWVHD  200 (670)
Q Consensus       123 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p--~~~~~~~~L~~l~i~~~~~~~~~~~~~~  200 (670)
                       ....-|.+++|+...|+...-.........||++..+.+..|| +++..  .+...+|++-.|.++..+-+. |-..+.
T Consensus       168 -~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~ids-wasvD~  244 (418)
T KOG2982|consen  168 -IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDS-WASVDA  244 (418)
T ss_pred             -ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccccccc-HHHHHH
Confidence             1123567888888888766543333334568999999999998 34332  344457788888776555443 666677


Q ss_pred             chh
Q 037562          201 LNT  203 (670)
Q Consensus       201 ~~~  203 (670)
                      +|.
T Consensus       245 Ln~  247 (418)
T KOG2982|consen  245 LNG  247 (418)
T ss_pred             HcC
Confidence            776

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.16  E-value=27  Score=43.16  Aligned_cols=264  Identities=12%  Similarity=0.028  Sum_probs=140.8

Q ss_pred             CCChHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562          249 SDDNSLQLEATTLFINLLSFD--RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAV  326 (670)
Q Consensus       249 ~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  326 (670)
                      +.+..+...|+..|++++...  ..+....-.+..++.++..++.+....++++.++.++.++.....   .. +..| =
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~n-IkSG-W 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NN-VKSG-W 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hh-hhcC-c
Confidence            456789999999998886642  111112233556788888878766558999999999999876222   22 2333 3


Q ss_pred             HHHHHhh----CCCCHHHHHHHHHHHHHhhCCCch-h----HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh--
Q 037562          327 PIFVKLL----ASPSVDVRKQTVWALGNVAGDSPR-C----RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC--  395 (670)
Q Consensus       327 ~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~-~----~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~--  395 (670)
                      +.+..++    .+.++.+...|..++..++.+.-. .    ...+.+  .+..+..+..+..+.++--.|+..|++++  
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            4444444    356788888888888877643111 0    111211  34444444433333444344554455331  


Q ss_pred             --cCC-----C------------------C------CChh---hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh-
Q 037562          396 --RGK-----P------------------Q------PPFN---QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN-  440 (670)
Q Consensus       396 --~~~-----~------------------~------~~~~---~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-  440 (670)
                        ...     .                  .      ....   ..-.++..+..+..+++.+||..|+.+|-.+..... 
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence              110     0                  0      0000   112233344455567789999999999877663322 


Q ss_pred             ----HHHHHHHHcCCHHHHHHhcCCC----------------C---cc----chhHHHHHHHHhh---cCCchhhHHHHh
Q 037562          441 ----DKVQAVIEAGVYPRLVELLGHS----------------S---SS----VLTPALRTIRNIV---KGDDFQTQCIIN  490 (670)
Q Consensus       441 ----~~~~~~~~~~~i~~L~~lL~~~----------------~---~~----v~~~a~~~L~~l~---~~~~~~~~~l~~  490 (670)
                          +.-..++. +++-.+...++..                +   .+    +...+..+|..++   ...-+.... +-
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L 1458 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LL 1458 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence                22222333 3444444443310                0   00    2233333444443   222122221 22


Q ss_pred             CCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          491 CGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       491 ~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      .+++..|...+..+ +..+.+.+..++.++..
T Consensus      1459 ~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1459 KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            35666666677777 88888888888888875

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.13  E-value=1.8  Score=38.67  Aligned_cols=141  Identities=17%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHcCC-Chh----hHHHHH------hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 037562          298 LQFKAAWALTNIASG-TSE----NTKVVI------DH-GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ  365 (670)
Q Consensus       298 v~~~a~~~L~~l~~~-~~~----~~~~i~------~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  365 (670)
                      +|..|+.+|..++.. ++.    +...++      .. .-.+.+.-++.++++.+|..|+.++..+-.+...+-....+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777763 111    011111      11 223344456788999999999999999876543211111100


Q ss_pred             -------------------CChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCCh--hhhhhhHHHHHHhhccCChhH
Q 037562          366 -------------------GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPF--NQVRPALPVLAQLIRSNDEEV  424 (670)
Q Consensus       366 -------------------~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~i~~L~~lL~~~~~~v  424 (670)
                                         ..-..|+..+....+..+....+.++..+....|..+.  .....++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence                               12334555666667788888999999999998866543  334667777778888999999


Q ss_pred             HHHHHHHHHHhccC
Q 037562          425 LTDACWALSYLSDG  438 (670)
Q Consensus       425 ~~~al~~L~~l~~~  438 (670)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999887644

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=2.8  Score=44.56  Aligned_cols=189  Identities=12%  Similarity=0.045  Sum_probs=114.6

Q ss_pred             hHHHHHHhhccCChhHHHHHHHHHHHhccCC-h----HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 037562          409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGT-N----DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF  483 (670)
Q Consensus       409 ~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~-~----~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  483 (670)
                      .-|.+.+.|+-.+..||.+|+..+.++-.-. +    +....+++ +-...+..+|.++-+.||..|..-+..+....-.
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe  253 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE  253 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            3466778888899999999999998876221 1    12223444 3457889999999999999998877776542211


Q ss_pred             hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562          484 QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNAT  563 (670)
Q Consensus       484 ~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  563 (670)
                      .+...+-..++..+..-+..+...+||-.....+..+... |... .+.+ .++|.+-..+.+....||..+...|..+-
T Consensus       254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh-~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PLSH-PLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-ccch-hHHH-HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            1111111123333333344343668888888888888653 2211 1222 24566666777888899999998888774


Q ss_pred             CCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562          564 KFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI  605 (670)
Q Consensus       564 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  605 (670)
                      ..    ....+..---.+.++.-|..++..+....+..+-+.
T Consensus       331 ~v----ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s  368 (1005)
T KOG1949|consen  331 AV----RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNS  368 (1005)
T ss_pred             hh----hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHh
Confidence            42    222223322345556666666666665555555443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.90  E-value=7  Score=39.74  Aligned_cols=274  Identities=16%  Similarity=0.128  Sum_probs=135.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCCchhHH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQT-VWALGNVAGDSPRCRD  360 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~  360 (670)
                      +..++.-+.+.....+|..++--|+.-+. ++.++..+...|..+.+.+.+.+ ++..+...+ +.++.-++.+.. ...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            44555555544436889888888888887 89999999999999999999955 444244444 444444444433 233


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc---------cCChhHHHHHHHH
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR---------SNDEEVLTDACWA  431 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~al~~  431 (670)
                      .+.+.+....+++++.-....++.....      ... ...........+..+...+.         .....-+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            3334444555566663000000000000      000 00000000111111112220         0112223333333


Q ss_pred             HHHhc--------------cCChHHHHHHHHcCCHHHHHHhcC----CC-------Cc-----cchhHHHHHHHHhhcCC
Q 037562          432 LSYLS--------------DGTNDKVQAVIEAGVYPRLVELLG----HS-------SS-----SVLTPALRTIRNIVKGD  481 (670)
Q Consensus       432 L~~l~--------------~~~~~~~~~~~~~~~i~~L~~lL~----~~-------~~-----~v~~~a~~~L~~l~~~~  481 (670)
                      +-.++              ...+...+.+.+.|++..++..+.    ..       ++     .....++++|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            33331              111112233555577888887765    11       11     13455778888887766


Q ss_pred             chhhHHHHhC--CChHHHHHh-hccC--CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHh-------h----
Q 037562          482 DFQTQCIINC--GALPYFLDM-LVHN--HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL-------Q----  545 (670)
Q Consensus       482 ~~~~~~l~~~--~~~~~L~~~-l~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-------~----  545 (670)
                      ......+...  +.+..+... +...  ....+...++..+.|++-.++.....+...++...+..+.       .    
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            6555544432  233222222 2222  0334456788888888877766655555443322211111       1    


Q ss_pred             ---cCChhHHHHHHHHHHHhcCC
Q 037562          546 ---NTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       546 ---~~~~~v~~~a~~aL~~l~~~  565 (670)
                         ....+...-+.+++.|++..
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~  356 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEH  356 (361)
T ss_pred             ccccccchHHHHHHHhHHHheee
Confidence               12346777888888888875

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.88  E-value=3.9  Score=42.26  Aligned_cols=167  Identities=10%  Similarity=0.085  Sum_probs=116.0

Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc----cchhHHHHHHHHhhcCCch
Q 037562          408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS----SVLTPALRTIRNIVKGDDF  483 (670)
Q Consensus       408 ~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~~~~~  483 (670)
                      .....+...+.+++...+..++..+..++.. ......++...++..+..++.+++.    .+...++.++..+..+.- 
T Consensus        83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   83 HYAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            3455677888888888888888888888754 5566778888999999999988654    355556666655544322 


Q ss_pred             hhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562          484 QTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA  562 (670)
Q Consensus       484 ~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  562 (670)
                      ..-..+...++.....+.+-.. +..+-..|...+-++..+++...+.+.+.--+..|+..++..+..++..|...+..+
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            1111122233333444432211 556777888888888888777777777877899999999999999999988888888


Q ss_pred             cCCCCHHHHHHHHH
Q 037562          563 TKFGTHEQIKHLVR  576 (670)
Q Consensus       563 ~~~~~~~~~~~l~~  576 (670)
                      ...+.++.++.+.+
T Consensus       241 ~~~a~~~~R~~~~~  254 (713)
T KOG2999|consen  241 FRKAPDDKRFEMAK  254 (713)
T ss_pred             HhhCChHHHHHHHH
Confidence            88766665555443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.87  E-value=17  Score=39.71  Aligned_cols=342  Identities=13%  Similarity=0.111  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh--CCChHHHH
Q 037562          253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVID--HGAVPIFV  330 (670)
Q Consensus       253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~L~  330 (670)
                      -+++..++.+..-.+....   .+.. .-.-..++.++++.++.-|+..+++++.-+..+-.-..+.+..  ......+.
T Consensus       502 iiRRRVa~ilg~Wvsvq~~---~e~k-~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf  577 (978)
T KOG1993|consen  502 IIRRRVAWILGQWVSVQQK---LELK-PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF  577 (978)
T ss_pred             HHHHHHHHHHhhhhheech---HhHH-HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH
Confidence            3556666666665443111   1111 1134456778877744678888888888887743333333321  12233334


Q ss_pred             HhhCC-CCHHHHHHHHHHHHHhhCCCchh-HHHHHhcCChHHHHHHh-cccCChhH-HHHHHHHHHhhhcCCCCCChhhh
Q 037562          331 KLLAS-PSVDVRKQTVWALGNVAGDSPRC-RDLVLSQGALIPLLAEL-NENANLSM-LRTATWTLFNFCRGKPQPPFNQV  406 (670)
Q Consensus       331 ~lL~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~Ll~~l-~~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~  406 (670)
                      .+++. +.-+.+...+..|+.+.....+. +....   .+-.++..+ .......+ +...+.+|.|+...-........
T Consensus       578 kll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~  654 (978)
T KOG1993|consen  578 KLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY  654 (978)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch
Confidence            44443 45566667777777766332211 11110   111222222 22333444 44667788888876544444444


Q ss_pred             hhhHHHHHHhhccCCh---hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc-CCc
Q 037562          407 RPALPVLAQLIRSNDE---EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK-GDD  482 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~---~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~  482 (670)
                      .-.+|.+....+-+.+   -..+.+...-.....+.+.....+.  +.++.+...+....+..+ .++.++..-.- .+.
T Consensus       655 ~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~  731 (978)
T KOG1993|consen  655 PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNT  731 (978)
T ss_pred             HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccH
Confidence            4455555444432222   2333333333222223222222222  466777777765444332 23333332221 121


Q ss_pred             hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh--cCChhHHHHHHHHHH
Q 037562          483 FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ--NTEFDTKKEAAWAIS  560 (670)
Q Consensus       483 ~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~aL~  560 (670)
                      .... -...|+++.+..++.+- ..+-....+.++..+...++ ........++++.+...+-  .+.+.+...-...++
T Consensus       732 ~fl~-~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vva  808 (978)
T KOG1993|consen  732 VFLN-DYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVA  808 (978)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHH
Confidence            1111 12336777777777665 44555555666666555444 4555566778888776553  345677777788888


Q ss_pred             HhcCCCCHHHHHHHHHc-CCcHHHHh--------hc-cCCChHHHHHHHHHHHHHHHh
Q 037562          561 NATKFGTHEQIKHLVRE-GCVKPLCD--------LL-LCADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       561 ~l~~~~~~~~~~~l~~~-~~i~~L~~--------ll-~~~~~~v~~~a~~~l~~l~~~  608 (670)
                      .++.. +++....+.+. .-.+.++.        +. +-.+++-|+.-+-|+..++..
T Consensus       809 Ri~l~-n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t  865 (978)
T KOG1993|consen  809 RISLR-NPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRT  865 (978)
T ss_pred             HHHhc-ChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence            87776 44544444432 22223331        11 223555555555555555543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.85  E-value=6.2  Score=40.11  Aligned_cols=241  Identities=18%  Similarity=0.218  Sum_probs=122.8

Q ss_pred             hHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh-hhcCCCCCCh
Q 037562          326 VPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN-FCRGKPQPPF  403 (670)
Q Consensus       326 i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~  403 (670)
                      +..+++-+. +....+|..++--|+.-+. ++.++..+...|....+++.+.+..+..+...++.++.. ++.+......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            445555555 3556788888888887775 467899999999999999999666555455545444444 4444433333


Q ss_pred             hhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC---------CCCccchhHHHHH
Q 037562          404 NQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG---------HSSSSVLTPALRT  473 (670)
Q Consensus       404 ~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~  473 (670)
                      .........+.+++... ...+....-      .. .........+ +.+..+...+.         .....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SS-RKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hh-hhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            33345555556666611 000000000      00 0000000100 11122222221         1223455666666


Q ss_pred             HHHhhc--------------CCchhhHHHHhCCChHHHHHhhcc----C------Cc-----hhHHHHHHHHHHHhhcCC
Q 037562          474 IRNIVK--------------GDDFQTQCIINCGALPYFLDMLVH----N------HE-----ESIKKEVSWIISNITCGN  524 (670)
Q Consensus       474 L~~l~~--------------~~~~~~~~l~~~~~~~~L~~~l~~----~------~~-----~~v~~~a~~~L~~l~~~~  524 (670)
                      +-.++.              ..+...+.+.+.|++..++..+..    .      .+     ...-..+..+|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            666631              011123445566788888888752    1      01     112233556666665555


Q ss_pred             HHHHHHHHhc--CChHHHHHH-hh---cCChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037562          525 REQIQAVIDS--GLIGPIVNL-LQ---NTEFDTKKEAAWAISNATKFGTHEQIKHLVR  576 (670)
Q Consensus       525 ~~~~~~l~~~--~~i~~L~~l-l~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  576 (670)
                      .++..++...  +.++.+... +.   .....+...++..+.|++.+ ++.....+..
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s  310 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFAS  310 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhh
Confidence            5555555432  233333322 22   23345567888999999886 4444444443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=17  Score=39.49  Aligned_cols=281  Identities=14%  Similarity=0.086  Sum_probs=157.5

Q ss_pred             CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562          323 HGAVPIFVKLLAS--------PSVDVRKQTVWALGNVAG--DSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLF  392 (670)
Q Consensus       323 ~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~  392 (670)
                      .|+++.+...+..        .+..-.+.|++.++++..  ..+....-+.+.-.++.++-.+ ++..--++..||..++
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence            4788999888832        234455677777777764  2222222233333344555555 5555677889999999


Q ss_pred             hhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC---CCCccchhH
Q 037562          393 NFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG---HSSSSVLTP  469 (670)
Q Consensus       393 ~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~  469 (670)
                      .+..+-  ........+.+.....+++++-.|+..|+-++..+..+.  +....+...+.+.+.++|.   .-+.++...
T Consensus       486 ~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         486 TIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence            995543  333344567777788888888899999999998887654  2333344444444444443   323333333


Q ss_pred             HHH-HHHHhhcCCchhhHHHHhC---CChHHHHHhhccCC-----chhHHHHHHHHHHHhhc------CCHHHHHHHHhc
Q 037562          470 ALR-TIRNIVKGDDFQTQCIINC---GALPYFLDMLVHNH-----EESIKKEVSWIISNITC------GNREQIQAVIDS  534 (670)
Q Consensus       470 a~~-~L~~l~~~~~~~~~~l~~~---~~~~~L~~~l~~~~-----~~~v~~~a~~~L~~l~~------~~~~~~~~l~~~  534 (670)
                      +.. .+..++..-......++..   .++..-..++.+++     ..+-+..|.+.|..+..      ..+...+.+ +.
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~l-e~  640 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYL-EV  640 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHH-HH
Confidence            332 2233332211222222211   12222233333221     12345566666666543      234433333 33


Q ss_pred             CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh-HHHHHHHHHHHHHHHhhhhh
Q 037562          535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP-KIVTVCLEGLENILKVGVAE  612 (670)
Q Consensus       535 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~  612 (670)
                      ...|..--++++.-.++-.+|+..+-...-. ..+....  -=|+.+.+.+++.+... .-...+..++.+++.++.+.
T Consensus       641 slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~pi--mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         641 SLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEPI--MWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhhh--hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccc
Confidence            4566666667777788888888888776553 2222221  22467777778877764 66677888999998887543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=92.78  E-value=2.2  Score=44.18  Aligned_cols=242  Identities=12%  Similarity=0.135  Sum_probs=138.2

Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC
Q 037562          276 EVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGD  354 (670)
Q Consensus       276 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~  354 (670)
                      ..+....+..|+.+++++| ++-|.....++.++-......|..+.. .+...+.+++.. ....-...++..++.+..+
T Consensus       128 ~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~g  205 (409)
T PF01603_consen  128 KYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIING  205 (409)
T ss_dssp             TTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred             HHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence            3455567888999999999 999999999999987645555555543 445666666653 4445556778888888754


Q ss_pred             Cc-hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 037562          355 SP-RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALS  433 (670)
Q Consensus       355 ~~-~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~  433 (670)
                      -+ ..++.... -....++-+.....-.........++..+...++.-    ...++..+++.=-..++.-....+.-+.
T Consensus       206 f~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk~WP~t~s~Kev~FL~el~  280 (409)
T PF01603_consen  206 FAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLKHWPKTNSQKEVLFLNELE  280 (409)
T ss_dssp             --SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHHHS-SS-HHHHHHHHHHHH
T ss_pred             cCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHhCCCCCchhHHHHHHHHH
Confidence            22 22221111 011222333322222334456666666666554321    2333444444444556655555666666


Q ss_pred             HhccCCh-HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhC---CChHHHHHhhccC---C-
Q 037562          434 YLSDGTN-DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINC---GALPYFLDMLVHN---H-  505 (670)
Q Consensus       434 ~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~~~~L~~~l~~~---~-  505 (670)
                      .+...-+ .....+. ..++..+..++++.+..|.+.|+..+.     ++.... ++..   .+++.+...+...   + 
T Consensus       281 ~il~~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAl~~w~-----n~~~~~-li~~~~~~i~p~i~~~L~~~~~~HW  353 (409)
T PF01603_consen  281 EILEVLPPEEFQKIM-VPLFKRLAKCISSPHFQVAERALYFWN-----NEYFLS-LISQNSRVILPIIFPALYRNSKNHW  353 (409)
T ss_dssp             HHHTT--HHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHGGGG-----SHHHHH-HHHCTHHHHHHHHHHHHSSTTSS-S
T ss_pred             HHHHhcCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHC-----CHHHHH-HHHhChHHHHHHHHHHHHHHHHHHh
Confidence            6665433 3333233 367788889999999999888886653     222222 2222   2566666666431   1 


Q ss_pred             chhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562          506 EESIKKEVSWIISNITCGNREQIQAV  531 (670)
Q Consensus       506 ~~~v~~~a~~~L~~l~~~~~~~~~~l  531 (670)
                      +..++..|..++..+...+++....+
T Consensus       354 n~~Vr~~a~~vl~~l~~~d~~lf~~~  379 (409)
T PF01603_consen  354 NQTVRNLAQNVLKILMEMDPKLFDKC  379 (409)
T ss_dssp             STTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            77899999999999987777654443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PLN03150 hypothetical protein; Provisional

Probab=92.78  E-value=0.15  Score=56.07  Aligned_cols=104  Identities=13%  Similarity=0.021  Sum_probs=62.7

Q ss_pred             cceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCccc
Q 037562           73 LTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAF  152 (670)
Q Consensus        73 L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  152 (670)
                      +..|++.++. +...+ +..+..+++|+.|+++++.--..++        .....+++|+.|.++++.--..++.  ...
T Consensus       420 v~~L~L~~n~-L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP--------~~~~~l~~L~~LdLs~N~lsg~iP~--~l~  487 (623)
T PLN03150        420 IDGLGLDNQG-LRGFI-PNDISKLRHLQSINLSGNSIRGNIP--------PSLGSITSLEVLDLSYNSFNGSIPE--SLG  487 (623)
T ss_pred             EEEEECCCCC-ccccC-CHHHhCCCCCCEEECCCCcccCcCC--------hHHhCCCCCCEEECCCCCCCCCCch--HHh
Confidence            6777777763 33322 3456778899999988875222222        1234578888888887643333333  245


Q ss_pred             CCCCccEEeEecCCCccccccCCcC-CCCccceeeee
Q 037562          153 TFPSLEILVVNYCPNMKIFSGGELS-TPNLHKVQLSR  188 (670)
Q Consensus       153 ~~~~L~~L~i~~C~~l~~~p~~~~~-~~~L~~l~i~~  188 (670)
                      .+++|+.|++.++.--..+|..... ..++..+.+.+
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence            6788999999887644466765432 23444555543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.43  E-value=11  Score=38.52  Aligned_cols=189  Identities=14%  Similarity=0.126  Sum_probs=118.3

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHcCCC---hhhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCC
Q 037562          285 RFVEFLMRQDYPQLQFKAAWALTNIASGT---SENTKVVIDHGAVPIFVKLLAS-------PSVDVRKQTVWALGNVAGD  354 (670)
Q Consensus       285 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~i~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~  354 (670)
                      .+..+....+ ++-|.+|....+.+...+   ..+++.+.++=+.+.+-+++.+       ++.-.+..++..|..+|.+
T Consensus        15 ~~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   15 DCLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hHHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            3556666666 688888888888888743   4566778888788888888865       3445667788888888865


Q ss_pred             Cchh-HHHHHhcCChHHHHHHhcccCChh------HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHH-
Q 037562          355 SPRC-RDLVLSQGALIPLLAELNENANLS------MLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLT-  426 (670)
Q Consensus       355 ~~~~-~~~i~~~~~i~~Ll~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~-  426 (670)
                      ..-. .+.+++  .||.++..+.+..|++      +...+..+|..++...+........|+++.+.++-.-++...-. 
T Consensus        94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a  171 (698)
T KOG2611|consen   94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA  171 (698)
T ss_pred             hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence            3211 122333  5899999997666665      77788999999998877777777799999998876644322211 


Q ss_pred             HHHHHHHHhc---cCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhh
Q 037562          427 DACWALSYLS---DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIV  478 (670)
Q Consensus       427 ~al~~L~~l~---~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  478 (670)
                      -++.++.-..   ..-++....+..  ++..+..-+...+...+-..|..|..+.
T Consensus       172 lal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  172 LALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             HHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            1222221111   111111111221  2344444444455567778888887554

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.28  E-value=4.1  Score=45.22  Aligned_cols=150  Identities=14%  Similarity=0.102  Sum_probs=82.9

Q ss_pred             ChhHHHHHHHHHHhhhcCC-C---------CCChhhhhhhHHHHHHhhc----cCChhHHHHHHHHHHHhccCChHHHHH
Q 037562          380 NLSMLRTATWTLFNFCRGK-P---------QPPFNQVRPALPVLAQLIR----SNDEEVLTDACWALSYLSDGTNDKVQA  445 (670)
Q Consensus       380 ~~~~~~~a~~~L~~l~~~~-~---------~~~~~~~~~~i~~L~~lL~----~~~~~v~~~al~~L~~l~~~~~~~~~~  445 (670)
                      ++.++..|+.+++.+.... .         ..........++.+...+.    ..+..-+..++.+|+|+...       
T Consensus       448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-------  520 (618)
T PF01347_consen  448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-------  520 (618)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------
T ss_pred             ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------
Confidence            4456666666665554322 1         1122222444555554444    56778888999999998632       


Q ss_pred             HHHcCCHHHHHHhcCCC---CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhh
Q 037562          446 VIEAGVYPRLVELLGHS---SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNIT  521 (670)
Q Consensus       446 ~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~  521 (670)
                          ..++.+..++...   ...+|..|++++..++...+..        +.+.++.++.+.. +.++|..|..+|... 
T Consensus       521 ----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~-  587 (618)
T PF01347_consen  521 ----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC-  587 (618)
T ss_dssp             ----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT-
T ss_pred             ----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc-
Confidence                3567778888776   4568999999999887655433        3345666665432 778998887776554 


Q ss_pred             cCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHH
Q 037562          522 CGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWA  558 (670)
Q Consensus       522 ~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~a  558 (670)
                      ..+..         .+..+...+. .++.+|...+...
T Consensus       588 ~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~  616 (618)
T PF01347_consen  588 NPSPS---------VLQRIAQSLWNEPSNQVASFVYSH  616 (618)
T ss_dssp             ---HH---------HHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred             CCCHH---------HHHHHHHHHhhCchHHHHHHHHHh
Confidence            22222         3344555555 3445555544433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=92.22  E-value=14  Score=37.11  Aligned_cols=159  Identities=16%  Similarity=0.152  Sum_probs=110.5

Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhc-CCchhhHHHHhC-CC-hHHHHHhhccC---C-c--------hhHHHHHHHH
Q 037562          452 YPRLVELLGHSSSSVLTPALRTIRNIVK-GDDFQTQCIINC-GA-LPYFLDMLVHN---H-E--------ESIKKEVSWI  516 (670)
Q Consensus       452 i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~~-~~~L~~~l~~~---~-~--------~~v~~~a~~~  516 (670)
                      +..+.+.|.+....+...+++.+..++. .....+..+... ++ .+.+..++...   . +        +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6788889999888888899999999998 554556656533 22 23444444221   0 1        2788887766


Q ss_pred             HHHhhc-CCHHHHHHHH-hcCChHHHHHHhhcCChhHHHHHHHHHHH-hcCCC--CHHHHHHHHHcCCcHHHHhhccCCC
Q 037562          517 ISNITC-GNREQIQAVI-DSGLIGPIVNLLQNTEFDTKKEAAWAISN-ATKFG--THEQIKHLVREGCVKPLCDLLLCAD  591 (670)
Q Consensus       517 L~~l~~-~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~  591 (670)
                      +..+.. +++..+..++ +.+.+..+..-+..+++++......++.. +....  .......+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            666555 5666666666 45668888888888888999999999985 33321  2334444556668889999888777


Q ss_pred             h----HHHHHHHHHHHHHHHhhh
Q 037562          592 P----KIVTVCLEGLENILKVGV  610 (670)
Q Consensus       592 ~----~v~~~a~~~l~~l~~~~~  610 (670)
                      +    .++..+-..|..++....
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCC
Confidence            7    888888888888775443

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.12  E-value=5.1  Score=42.78  Aligned_cols=192  Identities=15%  Similarity=0.039  Sum_probs=121.5

Q ss_pred             HHHHHhcCCCCccchhHHHHHHHHhhcCC-chh----hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHH
Q 037562          453 PRLVELLGHSSSSVLTPALRTIRNIVKGD-DFQ----TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQ  527 (670)
Q Consensus       453 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~----~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~  527 (670)
                      +.+.+-|+-.+..||.+|+..+-++---. ++.    ...+++ +-...+.++|.++ -+.||..|...++.+....-+.
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHH
Confidence            56667778889999999999988875322 221    222332 4577899999999 9999999999988876521111


Q ss_pred             HHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHH
Q 037562          528 IQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENIL  606 (670)
Q Consensus       528 ~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~  606 (670)
                      +..-+-..++..+.+-+. +...+||......|..+..+  |..... .+. +++.+-..+.+....||.++...+..+=
T Consensus       255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~-le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPL-LEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhH-HHH-HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            110011112333333333 44568999999998888874  222222 221 5667777888899999999888877643


Q ss_pred             HhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCcc
Q 037562          607 KVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRV  665 (670)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~  665 (670)
                      .. .              +.+...-+-.-..|..|..++-+.-+..+.-++..|||...
T Consensus       331 ~v-r--------------a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k  374 (1005)
T KOG1949|consen  331 AV-R--------------AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNK  374 (1005)
T ss_pred             hh-h--------------hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCC
Confidence            21 1              12222222223446777777777778888888888887654

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=92.04  E-value=7.6  Score=37.29  Aligned_cols=214  Identities=14%  Similarity=0.114  Sum_probs=121.8

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562          286 FVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVL  363 (670)
Q Consensus       286 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~  363 (670)
                      |=..|.+++ +.+|..|...|+.+...-+...   ....-+..|+++..+  .|......++.++..+.....-...   
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~---   76 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE---   76 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh---
Confidence            345677888 8999999999998876433221   222234555554433  4555555557777666632221111   


Q ss_pred             hcCChHHHHHHhccc-----CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhcc
Q 037562          364 SQGALIPLLAELNEN-----ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSD  437 (670)
Q Consensus       364 ~~~~i~~Ll~~l~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~  437 (670)
                         ....+++.+.+.     .....|..+...+..+...............+..+++.+..+ ||.-...+...+..+..
T Consensus        77 ---~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   77 ---SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             ---hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence               133333333222     223556677777777776542222222356677777777754 78877777777776654


Q ss_pred             CChHHHHHHHHcCCHHHHHHhcC---------CC-Cc--cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC
Q 037562          438 GTNDKVQAVIEAGVYPRLVELLG---------HS-SS--SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH  505 (670)
Q Consensus       438 ~~~~~~~~~~~~~~i~~L~~lL~---------~~-~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~  505 (670)
                      .-+.       ....+-+...+.         .+ ++  -.+..-...|.+.....+...     .-.+|.|++-|.++ 
T Consensus       154 ~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-  220 (262)
T PF14500_consen  154 EFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-  220 (262)
T ss_pred             hccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-
Confidence            4331       122223333322         11 22  234444455555544444333     24789999999999 


Q ss_pred             chhHHHHHHHHHHHhhc
Q 037562          506 EESIKKEVSWIISNITC  522 (670)
Q Consensus       506 ~~~v~~~a~~~L~~l~~  522 (670)
                      .+.++..+..++...+.
T Consensus       221 ~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  221 SPSVKLDSLQTLKACIE  237 (262)
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            88999999999998876

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=91.91  E-value=1.6  Score=46.76  Aligned_cols=234  Identities=15%  Similarity=0.131  Sum_probs=138.4

Q ss_pred             hhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCH
Q 037562          204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV  283 (670)
Q Consensus       204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l  283 (670)
                      ..+.-|.+.|.++.-+-..++.+.          ..+|.+++.+....  .+-..+-.+..++...  +  ......-++
T Consensus       288 ~qKs~Flk~Ls~~ip~fp~rv~~~----------kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~--s--~~~~~~~~~  351 (700)
T KOG2137|consen  288 SQKSSFLKGLSKLIPTFPARVLFQ----------KILPTLVAELVNTK--MVPIVLPLVLLIAEGL--S--QNEFGPKML  351 (700)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHH----------hhhhHHHHHhcccc--ccccccchhhhhhhcc--c--hhhhhhhhh
Confidence            355666777766666666665555          23677877774322  1211222222222221  1  122233467


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562          284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVL  363 (670)
Q Consensus       284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  363 (670)
                      |.|...++.++..++..-.+.-+.-|..   +....-+...+++.|..-+++.+..+++.++..+..++..-+.   .++
T Consensus       352 p~l~pi~~~~~~~~~~l~i~e~mdlL~~---Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~v  425 (700)
T KOG2137|consen  352 PALKPIYSASDPKQALLFILENMDLLKE---KTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFV  425 (700)
T ss_pred             HHHHHHhccCCcccchhhHHhhHHHHHh---hCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHH
Confidence            7777777754422333222222211221   2222233446788888899999999999999999999854331   223


Q ss_pred             hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 037562          364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKV  443 (670)
Q Consensus       364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~  443 (670)
                      ..-++|.+-.+.....+..++.+++-|+..+...   .........+..+.+..+..++.+....+.+..++....... 
T Consensus       426 k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-  501 (700)
T KOG2137|consen  426 KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-  501 (700)
T ss_pred             HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-
Confidence            3345777777766778889999999999998832   122222344455566666788999888888888877443322 


Q ss_pred             HHHHHcCCHHHHHHhcCCCC
Q 037562          444 QAVIEAGVYPRLVELLGHSS  463 (670)
Q Consensus       444 ~~~~~~~~i~~L~~lL~~~~  463 (670)
                      ..+....+++.++.+...+.
T Consensus       502 ~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  502 VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             eeeehhhhhhhhhhhhhccc
Confidence            23444577888887776654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.89  E-value=0.88  Score=41.36  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=76.1

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC--------CCHHHHHHHHHHHHHHc
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ--------DYPQLQFKAAWALTNIA  310 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~--------~~~~v~~~a~~~L~~l~  310 (670)
                      ....+++.+++.....  ..+..|..........-++.+++.|++..|+.+|..-        ...+....+++|+..+.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            3456777776554432  3444444444433233467888889999998877531        22578899999999998


Q ss_pred             CCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 037562          311 SGTSENTKVVID-HGAVPIFVKLLASPSVDVRKQTVWALGNVA  352 (670)
Q Consensus       311 ~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  352 (670)
                      . +......++. .+++..++..|.+++..++..++..|..+|
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8 5565666664 689999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.76  E-value=15  Score=38.61  Aligned_cols=107  Identities=20%  Similarity=0.289  Sum_probs=77.6

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +.+.-++..+.+.+-.++..+++.|+.+...  -..++..+-+|.+..+.+-+-+.. +.||..|+.+|+.+-.......
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChH
Confidence            4466777777889999999999999888544  556677788888888888777777 7999999999999875322221


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC
Q 037562          318 KVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDS  355 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~  355 (670)
                      ..     ....|...++. |+.++|..|   |.|+..++
T Consensus       168 n~-----~~n~l~~~vqnDPS~EVRr~a---llni~vdn  198 (885)
T COG5218         168 NR-----IVNLLKDIVQNDPSDEVRRLA---LLNISVDN  198 (885)
T ss_pred             HH-----HHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence            11     23456666654 888999874   55665443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=91.71  E-value=0.88  Score=41.13  Aligned_cols=127  Identities=15%  Similarity=0.104  Sum_probs=79.1

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCchhHHHHH---------------hcCChHHHHHHhcc-----cCChhHHHHHHHHHH
Q 037562          333 LASPSVDVRKQTVWALGNVAGDSPRCRDLVL---------------SQGALIPLLAELNE-----NANLSMLRTATWTLF  392 (670)
Q Consensus       333 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~---------------~~~~i~~Ll~~l~~-----~~~~~~~~~a~~~L~  392 (670)
                      +.+++......++..|+|++......+..+-               +...+..|+..+.+     .....-..+.+.+++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            3345556777888899999876554432221               11235666666644     123455678999999


Q ss_pred             hhhcCCCCCChhhh--hhh--HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc---CCHHHHHHhcC
Q 037562          393 NFCRGKPQPPFNQV--RPA--LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLG  460 (670)
Q Consensus       393 ~l~~~~~~~~~~~~--~~~--i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~  460 (670)
                      |++.....+.....  .+.  +..|+.++++.+.--|.-++.++.|++-..+.. ..++..   ++++.++.-|.
T Consensus        84 NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   84 NLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence            99988644443333  233  788888888887777788999999999664433 333332   34444444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=91.64  E-value=3.6  Score=36.75  Aligned_cols=145  Identities=15%  Similarity=0.183  Sum_probs=89.8

Q ss_pred             cchhHHHHHHHHhhcCCchh-----hHHHHh------CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh
Q 037562          465 SVLTPALRTIRNIVKGDDFQ-----TQCIIN------CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID  533 (670)
Q Consensus       465 ~v~~~a~~~L~~l~~~~~~~-----~~~l~~------~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~  533 (670)
                      ++|..|+.+|..++...+..     -..++-      .+.-+.|+..+-.++++.+|..|+.++..+..+...+....-+
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            36778888888887752211     111221      2233445555444449999999999999998876554443332


Q ss_pred             cC-------------------ChHHHHHHhhc-CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH
Q 037562          534 SG-------------------LIGPIVNLLQN-TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK  593 (670)
Q Consensus       534 ~~-------------------~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  593 (670)
                      .+                   +-..|+..+.. .+..+....+.++..+......+..+.=.-...+..+..++.+.|++
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            11                   22344445553 46778889999999998874333222111112455566677889999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 037562          594 IVTVCLEGLENILKVG  609 (670)
Q Consensus       594 v~~~a~~~l~~l~~~~  609 (670)
                      ++..++.+++.++...
T Consensus       161 v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999887543

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.61  E-value=5.6  Score=44.16  Aligned_cols=199  Identities=17%  Similarity=0.118  Sum_probs=110.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----PSVDVRKQTVWALGNVAG----  353 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~----  353 (670)
                      .+..+.+++.+..- . ...|+..+..+..........     .+..+..+++.    .++.++..|+-+++.+..    
T Consensus       396 av~~i~~~I~~~~~-~-~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKL-T-DDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCC-C-HHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            35566777776541 2 222444454444322122222     34566666664    567788888888887762    


Q ss_pred             CC-----chhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC---Ch
Q 037562          354 DS-----PRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN---DE  422 (670)
Q Consensus       354 ~~-----~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~  422 (670)
                      ..     ............++.+...+.   ...+.+-+..++.+|.|+..          ...++.+...+...   +.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence            21     000011112234666666664   34455777789999999975          34778888888766   68


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC--CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh
Q 037562          423 EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS--SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM  500 (670)
Q Consensus       423 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~  500 (670)
                      .+|..|++++..++...+....        +.+.++..+.  +.++|..|+.+|...   +|..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence            8999999999998776664433        5666776653  456888887666432   2221       235566777


Q ss_pred             hccCCchhHHHHHHH
Q 037562          501 LVHNHEESIKKEVSW  515 (670)
Q Consensus       501 l~~~~~~~v~~~a~~  515 (670)
                      +..+++..|......
T Consensus       601 l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  601 LWNEPSNQVASFVYS  615 (618)
T ss_dssp             HTT-S-HHHHHHHHH
T ss_pred             HhhCchHHHHHHHHH
Confidence            776656666655443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.59  E-value=13  Score=37.69  Aligned_cols=215  Identities=11%  Similarity=0.129  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCC-----ccchhHHHHHHHHhhcCCc--------hhhHHHH
Q 037562          423 EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS-----SSVLTPALRTIRNIVKGDD--------FQTQCII  489 (670)
Q Consensus       423 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~--------~~~~~l~  489 (670)
                      .++..++..+...+...++....++. .++..+..+|.+-.     ..+...|+..|..++....        .....++
T Consensus       111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii  189 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII  189 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence            45566666666655444444443333 45566666665422     2345556666666554211        1112222


Q ss_pred             hC------------------CChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh---cCC
Q 037562          490 NC------------------GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ---NTE  548 (670)
Q Consensus       490 ~~------------------~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~---~~~  548 (670)
                      +.                  +-.+.+-.-+...+...-|..|+..+..++...+.....++. +.+..++.-..   +.+
T Consensus       190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~  268 (370)
T PF08506_consen  190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNN  268 (370)
T ss_dssp             HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-
T ss_pred             HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCccc
Confidence            21                  112222222332213456778888888887643333322221 12222222111   346


Q ss_pred             hhHHHHHHHHHHHhcCCCCH-----------HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCC
Q 037562          549 FDTKKEAAWAISNATKFGTH-----------EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGT  617 (670)
Q Consensus       549 ~~v~~~a~~aL~~l~~~~~~-----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  617 (670)
                      +.-+..|+..++.++..+..           -....+....+++.|. --.+..|-++..|++.+..+-..-+       
T Consensus       269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-------  340 (370)
T PF08506_consen  269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-------  340 (370)
T ss_dssp             HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--------
T ss_pred             HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-------
Confidence            78889999999999887521           0345566666777776 2234566788888877765322111       


Q ss_pred             CCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 037562          618 AVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL  657 (670)
Q Consensus       618 ~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l  657 (670)
                              .+.+  .+.++.+...+.+++.-|+.+|+..|
T Consensus       341 --------~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  341 --------KEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             --------HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             --------HHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence                    1122  23578888888999999999988654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=91.45  E-value=3  Score=34.32  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=65.8

Q ss_pred             CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHH
Q 037562          547 TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYA  626 (670)
Q Consensus       547 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~  626 (670)
                      .+...-.....-|++++.. ++.....     +.+.|.+=|++.++.|+.+++.+|..++..+...-           ..
T Consensus        13 d~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f-----------~~   75 (122)
T cd03572          13 DDEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF-----------KR   75 (122)
T ss_pred             CCCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH-----------HH
Confidence            3333333444455555554 3333333     56778888888999999999999999998765321           22


Q ss_pred             HHHHHhchHHHHHHhhc--------CCCHHHHHHHHHHHHHhcCCc
Q 037562          627 QLVEEAEGLEKIENLQS--------HDDNGISEKAVEILETYWSSR  664 (670)
Q Consensus       627 ~~~~~~g~~~~l~~L~~--------~~~~~v~~~a~~~l~~~~~~~  664 (670)
                      ..-.....|..+.++..        ..+..|+..|..++.-+|+++
T Consensus        76 ~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          76 ELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence            33334444555665544        235579999999999999876

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=91.31  E-value=2.1  Score=38.66  Aligned_cols=114  Identities=14%  Similarity=0.130  Sum_probs=75.9

Q ss_pred             cCCCCccchhHHHHHHHHhhcCCchhhHHHHh----------------CCChHHHHHhhccCC-----chhHHHHHHHHH
Q 037562          459 LGHSSSSVLTPALRTIRNIVKGDDFQTQCIIN----------------CGALPYFLDMLVHNH-----EESIKKEVSWII  517 (670)
Q Consensus       459 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~----------------~~~~~~L~~~l~~~~-----~~~v~~~a~~~L  517 (670)
                      +.+++......++..|+|++..... +..+++                ...+..|+..+..+.     ...--...+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            3455566777888899999874433 332332                124566777665511     334456788899


Q ss_pred             HHhhcCCHHHHHHHHhc--CC--hHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037562          518 SNITCGNREQIQAVIDS--GL--IGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR  576 (670)
Q Consensus       518 ~~l~~~~~~~~~~l~~~--~~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  576 (670)
                      .|++.. ++.++.+++.  +.  +..|+..+++.+..-|.-++.+|.|++..  .+....+..
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~  142 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS  142 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence            999664 7777777753  33  77888888888778888999999999984  344455443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=91.27  E-value=4.4  Score=44.37  Aligned_cols=318  Identities=16%  Similarity=0.109  Sum_probs=156.5

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH------Hh
Q 037562          249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVV------ID  322 (670)
Q Consensus       249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i------~~  322 (670)
                      -+|.-+...++..++.++.+  ......+++.|++..|+..=.-   +..-.-...||..+.. .....+.+      +-
T Consensus       364 ~~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~  437 (1516)
T KOG1832|consen  364 LDDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGS-LQGIMERVCALPLVVI  437 (1516)
T ss_pred             cccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHH
Confidence            35566778889999998887  5777888888888777664322   2333344445555554 11111111      11


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------cC-----------ChhHH
Q 037562          323 HGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-------NA-----------NLSML  384 (670)
Q Consensus       323 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~-------~~-----------~~~~~  384 (670)
                      ..++..-+.++.-....-+.++...+..-... -..-+.+-....+..|+.++..       +.           +.+.-
T Consensus       438 ~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~  516 (1516)
T KOG1832|consen  438 HQVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMA  516 (1516)
T ss_pred             HHHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhh
Confidence            23344445555543322222222211111000 0011222233445555555521       11           11233


Q ss_pred             HHHHHHHHhhhcCC-----CC-CChhhhhhhHHHHHHhhccCC------hhHHHHHHHHHHHhccCCh-------HHHHH
Q 037562          385 RTATWTLFNFCRGK-----PQ-PPFNQVRPALPVLAQLIRSND------EEVLTDACWALSYLSDGTN-------DKVQA  445 (670)
Q Consensus       385 ~~a~~~L~~l~~~~-----~~-~~~~~~~~~i~~L~~lL~~~~------~~v~~~al~~L~~l~~~~~-------~~~~~  445 (670)
                      ...|.+|.......     .+ .......+..+..++-+...+      .+..+.+++-+..+....+       ...+.
T Consensus       517 ~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aen  596 (1516)
T KOG1832|consen  517 FHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAEN  596 (1516)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHH
Confidence            35555555433322     00 011111222222222222111      1222333333333322222       23445


Q ss_pred             HHHcCCHHHHHHhcCC-CCc-------cchhHHHHHHHHhhcCCchhhHHHHhC--------CChHHHHHhhcc---CCc
Q 037562          446 VIEAGVYPRLVELLGH-SSS-------SVLTPALRTIRNIVKGDDFQTQCIINC--------GALPYFLDMLVH---NHE  506 (670)
Q Consensus       446 ~~~~~~i~~L~~lL~~-~~~-------~v~~~a~~~L~~l~~~~~~~~~~l~~~--------~~~~~L~~~l~~---~~~  506 (670)
                      +.+.+.+..++.+.+. .++       +....|+.+|.-+.. -+.....++.+        .++..+++.-..   ..+
T Consensus       597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D  675 (1516)
T KOG1832|consen  597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD  675 (1516)
T ss_pred             HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence            6777888888887764 233       234556666655544 23333334321        244444444322   127


Q ss_pred             hhHHHHHHHHHHHhhcCCHHH-----------------------------------HHHHHhcCChHHHHHHhhcCC---
Q 037562          507 ESIKKEVSWIISNITCGNREQ-----------------------------------IQAVIDSGLIGPIVNLLQNTE---  548 (670)
Q Consensus       507 ~~v~~~a~~~L~~l~~~~~~~-----------------------------------~~~l~~~~~i~~L~~ll~~~~---  548 (670)
                      ++++..|..++.|+....|+.                                   ...+...++|..|+.+++...   
T Consensus       676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t  755 (1516)
T KOG1832|consen  676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT  755 (1516)
T ss_pred             HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence            899999999999986533211                                   112234678999999998544   


Q ss_pred             --hhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037562          549 --FDTKKEAAWAISNATKFGTHEQIKHLVR  576 (670)
Q Consensus       549 --~~v~~~a~~aL~~l~~~~~~~~~~~l~~  576 (670)
                        ..+|..|+.+|.-++..  +..++.+..
T Consensus       756 ~aD~IRalAc~~L~GLaR~--~tVrQIltK  783 (1516)
T KOG1832|consen  756 TADCIRALACRVLLGLARD--DTVRQILTK  783 (1516)
T ss_pred             cHHHHHHHHHHHHhccccC--cHHHHHHHh
Confidence              46899999999999994  455555444

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.26  E-value=0.78  Score=43.72  Aligned_cols=139  Identities=11%  Similarity=0.140  Sum_probs=95.3

Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562          452 YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV  531 (670)
Q Consensus       452 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  531 (670)
                      +...+..|.+.+|.....++..|..++...++.....+. .++-.+++-+++. ...|-+.|+.+++.+.......+.. 
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~-  166 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ-  166 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            345667788889999999999999998766543332222 3555666667777 8889999999999997643333322 


Q ss_pred             HhcCChHHHHHH-hh---cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562          532 IDSGLIGPIVNL-LQ---NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI  605 (670)
Q Consensus       532 ~~~~~i~~L~~l-l~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  605 (670)
                          -+..++.. +.   ..+.-++..|-.||..+..+..|..        +++.|+..+.+.++.++..+..++.+.
T Consensus       167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhcccccc
Confidence                22333333 33   2345689999999999988755543        567777788888888888776665544

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.17  E-value=19  Score=39.55  Aligned_cols=134  Identities=17%  Similarity=0.162  Sum_probs=80.8

Q ss_pred             hHHHHHHhccc---CChhHHHHHHHHHHhhhcCC----CCCChhhhhhhHHHHHHhhc----cCChhHHHHHHHHHHHhc
Q 037562          368 LIPLLAELNEN---ANLSMLRTATWTLFNFCRGK----PQPPFNQVRPALPVLAQLIR----SNDEEVLTDACWALSYLS  436 (670)
Q Consensus       368 i~~Ll~~l~~~---~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~al~~L~~l~  436 (670)
                      +..+..++...   ..+.++..|..+++.+....    +..........++.+...+.    ..+.+.+...+.+|+|+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            55566666322   24456666676666665422    21112233556666665554    456667788899999987


Q ss_pred             cCChHHHHHHHHcCCHHHHHHhcC-C--CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC-CchhHHHH
Q 037562          437 DGTNDKVQAVIEAGVYPRLVELLG-H--SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN-HEESIKKE  512 (670)
Q Consensus       437 ~~~~~~~~~~~~~~~i~~L~~lL~-~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~~v~~~  512 (670)
                      ..           ..+..+..++. +  .+..+|..|+++|..++...+...        -+.++.++.+. .++++|..
T Consensus       475 ~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRia  535 (574)
T smart00638      475 HP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRMA  535 (574)
T ss_pred             Ch-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHHH
Confidence            43           22344555554 2  234589999999999886554432        34455666543 37889988


Q ss_pred             HHHHHHHh
Q 037562          513 VSWIISNI  520 (670)
Q Consensus       513 a~~~L~~l  520 (670)
                      |+.++...
T Consensus       536 A~~~lm~t  543 (574)
T smart00638      536 AVLVLMET  543 (574)
T ss_pred             HHHHHHhc
Confidence            88777655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.15  E-value=0.011  Score=57.82  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=27.9

Q ss_pred             CCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562          153 TFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       153 ~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      .+++|..|++++ .+++.+|.+..-+.+|.+|+++..
T Consensus       250 ~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  250 HLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             ccccceeeeccc-cccccCchHHHHhhhhhhhcccCC
Confidence            567888888886 578888888887888888877643

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=91.09  E-value=18  Score=44.61  Aligned_cols=269  Identities=6%  Similarity=0.054  Sum_probs=146.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCC---chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHH
Q 037562          335 SPSVDVRKQTVWALGNVAGDS---PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALP  411 (670)
Q Consensus       335 ~~~~~v~~~a~~~L~~l~~~~---~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~  411 (670)
                      +++..++..|+..|..++..-   ++....-.+...+.++...+.+..+.+++..++.++.++..........-...++.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence            345677778888787777321   11111122334578888888778888999999999998876542221112233444


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHH--c----CCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCc--
Q 037562          412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIE--A----GVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDD--  482 (670)
Q Consensus       412 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~----~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~--  482 (670)
                      .+.....+.++.+...+..++..+....-   ..+..  .    ..+..+..+.... +.++-..|+..|++++..-.  
T Consensus      1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~ 1304 (1780)
T PLN03076       1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1304 (1780)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhc
Confidence            44444556677888888888776653211   11110  1    2344444444333 45677777777776632100  


Q ss_pred             -------------------------hhhHHHH-----hCCChHHHHH---hhccCCchhHHHHHHHHHHHhhcC-----C
Q 037562          483 -------------------------FQTQCII-----NCGALPYFLD---MLVHNHEESIKKEVSWIISNITCG-----N  524 (670)
Q Consensus       483 -------------------------~~~~~l~-----~~~~~~~L~~---~l~~~~~~~v~~~a~~~L~~l~~~-----~  524 (670)
                                               .....+.     ....++.|..   +..+. +.+||..|..+|-.+...     +
T Consensus      1305 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076       1305 DLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred             cccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCC
Confidence                                     0000000     0123333333   34555 999999999999887651     3


Q ss_pred             HHHHHHHHhcCChHHHHHHhhcC----------------C-------hhHHHHHHHHHHHhcCCCCHHHHHHH--HHcCC
Q 037562          525 REQIQAVIDSGLIGPIVNLLQNT----------------E-------FDTKKEAAWAISNATKFGTHEQIKHL--VREGC  579 (670)
Q Consensus       525 ~~~~~~l~~~~~i~~L~~ll~~~----------------~-------~~v~~~a~~aL~~l~~~~~~~~~~~l--~~~~~  579 (670)
                      ++....+.. +++.++++.++..                +       ..+...+..||..++..- ..+...+  +=.+.
T Consensus      1384 ~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf-t~fFd~L~~~L~~~ 1461 (1780)
T PLN03076       1384 LPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF-VKFYPTVNPLLKKV 1461 (1780)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            444444444 4555555554311                0       012333344444443320 1111111  11235


Q ss_pred             cHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          580 VKPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       580 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      +..|..+...++..+...+..+|.+++...
T Consensus      1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            556666667788888888899998887643

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.02  E-value=20  Score=36.67  Aligned_cols=189  Identities=12%  Similarity=0.067  Sum_probs=110.2

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHhcCCCC--CcHHHHHHcCCHHHHHHhhcCCC----CH--HHHHHHHHHHHHHcCCC
Q 037562          242 AMVDGVWSDDNSLQLEATTLFINLLSFDRS--PPIDEVIQSGVVPRFVEFLMRQD----YP--QLQFKAAWALTNIASGT  313 (670)
Q Consensus       242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~l~~L~~ll~~~~----~~--~v~~~a~~~L~~l~~~~  313 (670)
                      ......+..+.+.++.|+....++..+.+-  ...+.+.+.-+.+.+-+++.+.+    -+  -.+..++.+|+.++. .
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~   93 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-V   93 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-C
Confidence            455566667778899999999988776422  22445777777888888886532    12  244556677777776 4


Q ss_pred             hhhH--HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChh-H
Q 037562          314 SENT--KVVIDHGAVPIFVKLLAS-PSV------DVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLS-M  383 (670)
Q Consensus       314 ~~~~--~~i~~~~~i~~L~~lL~~-~~~------~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~-~  383 (670)
                      ++..  ..++  +.||.+...+.. .++      .+.+.+-.+|..++...+ ....++..|+++.+.+.- ...+-. -
T Consensus        94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y-~~~~~~~d  169 (698)
T KOG2611|consen   94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMY-ELPDGSHD  169 (698)
T ss_pred             hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHH-hCCCCchh
Confidence            4432  2233  468889888864 232      377888999999998755 456677889999888654 222211 1


Q ss_pred             HHHHHHHHHhhhcCC--CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562          384 LRTATWTLFNFCRGK--PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYL  435 (670)
Q Consensus       384 ~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l  435 (670)
                      ..-++.++.-....-  -.......-..+..+..=+...+...+...+..|..+
T Consensus       170 ~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  170 MALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            222222222222111  1111111222344444444445566677777777643

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.00  E-value=8.1  Score=42.39  Aligned_cols=161  Identities=18%  Similarity=0.182  Sum_probs=95.6

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhcc---cCChhHHHHHHHHHHh
Q 037562          325 AVPIFVKLLAS----PSVDVRKQTVWALGNVAG----DSPRCRDLVLSQGALIPLLAELNE---NANLSMLRTATWTLFN  393 (670)
Q Consensus       325 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~----~~~~~~~~i~~~~~i~~Ll~~l~~---~~~~~~~~~a~~~L~~  393 (670)
                      .+..+..++.+    +++.++..|+-+++++..    ..+.+...+ ....++.+...+..   ..+.+-+..++.+|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            45667777765    456788888888887762    222111111 11245555555532   3344555677888888


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhc-c--CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchh
Q 037562          394 FCRGKPQPPFNQVRPALPVLAQLIR-S--NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLT  468 (670)
Q Consensus       394 l~~~~~~~~~~~~~~~i~~L~~lL~-~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~  468 (670)
                      +...          ..++.+...+. .  .+..+|..|+++|..++...+...+        +.++++..+  .+.++|.
T Consensus       473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence            7764          34556666665 2  2467999999999998865554433        556666655  4556888


Q ss_pred             HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHH
Q 037562          469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS  514 (670)
Q Consensus       469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~  514 (670)
                      .|+.++...   +|..       ..+..+...+..+++..|+....
T Consensus       535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~  570 (574)
T smart00638      535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVY  570 (574)
T ss_pred             HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhH
Confidence            887666433   2221       23556667777665666655443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=91.00  E-value=0.029  Score=60.98  Aligned_cols=84  Identities=18%  Similarity=0.267  Sum_probs=37.9

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +||.|.+.+- .|..+|......++.|++|.++|- +|+.+|..+..++.|+.|...+- .+..+   |.+..+|.|+.+
T Consensus       384 hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~f---Pe~~~l~qL~~l  457 (1081)
T KOG0618|consen  384 HLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSF---PELAQLPQLKVL  457 (1081)
T ss_pred             ceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeec---hhhhhcCcceEE
Confidence            5555555432 344444333344455555555543 34455544444444444443211 12222   344455666666


Q ss_pred             cccccccccee
Q 037562          103 EIESCDKITEI  113 (670)
Q Consensus       103 ~i~~c~~l~~~  113 (670)
                      ++ +|.++.++
T Consensus       458 Dl-S~N~L~~~  467 (1081)
T KOG0618|consen  458 DL-SCNNLSEV  467 (1081)
T ss_pred             ec-ccchhhhh
Confidence            65 44555443

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=90.89  E-value=21  Score=36.56  Aligned_cols=266  Identities=13%  Similarity=0.051  Sum_probs=132.7

Q ss_pred             CHHHHHHHHHHHHHhhCCCchhHHHHHhcC---ChHHHHHHhcc-cCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHH
Q 037562          337 SVDVRKQTVWALGNVAGDSPRCRDLVLSQG---ALIPLLAELNE-NANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPV  412 (670)
Q Consensus       337 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~---~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~  412 (670)
                      +..+..+|+.+|+.+..+.. ....+-+.-   .+...+..+.+ +.+..+...++|+|+.=.-............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            67888899999999875432 222111111   24444555523 33445666677766642222111111122223333


Q ss_pred             HHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc---hhh---
Q 037562          413 LAQLIR-SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD---FQT---  485 (670)
Q Consensus       413 L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~---  485 (670)
                      +..+-+ -+...+....+.++.++....+.....-.+ ..++.++..+-+....++..|..+...+...-+   ...   
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~  216 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV  216 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            333332 356778888999999998766554332222 467778877777777788877666555542111   111   


Q ss_pred             HHHHhC----C-----ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH--HHHHHHhcCChHHHHHHhhcCChhHHHH
Q 037562          486 QCIINC----G-----ALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE--QIQAVIDSGLIGPIVNLLQNTEFDTKKE  554 (670)
Q Consensus       486 ~~l~~~----~-----~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~~~  554 (670)
                      ...++.    +     +.+.+..++.+. +....---.|...-...+.+.  ....+  +..+...-..+.++|+.+|..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~~k~~  293 (372)
T PF12231_consen  217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQVKIQ  293 (372)
T ss_pred             HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHHHHHH
Confidence            112222    2     233366666663 222222223333222222221  11111  123444445666889999999


Q ss_pred             HHHHHHHhcCCC--CHHHHHHHHHcCCcHHHHhhcc-CCCh----HHHHHHHHHHHHHHHh
Q 037562          555 AAWAISNATKFG--THEQIKHLVREGCVKPLCDLLL-CADP----KIVTVCLEGLENILKV  608 (670)
Q Consensus       555 a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~-~~~~----~v~~~a~~~l~~l~~~  608 (670)
                      |..+-..+....  +.......+.. ...++..-++ ....    +++..++..+.+++.+
T Consensus       294 A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  294 AFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            999988876521  11111121211 1222333332 2233    6677777777777644

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.83  E-value=19  Score=42.07  Aligned_cols=99  Identities=18%  Similarity=0.142  Sum_probs=64.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---ccC---ChhHHHHHHHHHHhhhcCC-CCCChhhh
Q 037562          334 ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---ENA---NLSMLRTATWTLFNFCRGK-PQPPFNQV  406 (670)
Q Consensus       334 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---~~~---~~~~~~~a~~~L~~l~~~~-~~~~~~~~  406 (670)
                      ..+..+++...+.++.++.....+   .++. | -+.+++.+.   +..   ...+.+.+..+|.-++.+. +.-....+
T Consensus       852 s~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci  926 (1610)
T KOG1848|consen  852 SSRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI  926 (1610)
T ss_pred             cCccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence            346677788888888888744322   1211 2 344444442   222   3467778888888888776 55566667


Q ss_pred             hhhHHHHHHhhcc-CChhHHHHHHHHHHHhcc
Q 037562          407 RPALPVLAQLIRS-NDEEVLTDACWALSYLSD  437 (670)
Q Consensus       407 ~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~  437 (670)
                      .++++.+...-+. .|..+--.|+..++++++
T Consensus       927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsD  958 (1610)
T KOG1848|consen  927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD  958 (1610)
T ss_pred             HHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence            8888888777653 477888888888888764

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=90.77  E-value=8.6  Score=34.85  Aligned_cols=146  Identities=16%  Similarity=0.157  Sum_probs=91.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV  319 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  319 (670)
                      ++.+++...+++..++..|+..+..+...+=..+.      ..+|.++.+..+++ +.++..|...+..+....+.....
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence            57788878899999999999999887665311222      15899999999988 899999999999998755444433


Q ss_pred             HHhCCChHHHHHhh---CCC-CHHH---HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC-------ChhHHH
Q 037562          320 VIDHGAVPIFVKLL---ASP-SVDV---RKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA-------NLSMLR  385 (670)
Q Consensus       320 i~~~~~i~~L~~lL---~~~-~~~v---~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~-------~~~~~~  385 (670)
                      -...| +..-.++-   ... ....   .......+..+...+...|..+     +..+++.+..+.       .+.-..
T Consensus        83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~  156 (187)
T PF12830_consen   83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD  156 (187)
T ss_pred             HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence            33223 33222222   111 1111   4455666777776555555554     666777764332       233344


Q ss_pred             HHHHHHHhhhcCC
Q 037562          386 TATWTLFNFCRGK  398 (670)
Q Consensus       386 ~a~~~L~~l~~~~  398 (670)
                      ...++..|++.-+
T Consensus       157 ~~~Fla~nLA~l~  169 (187)
T PF12830_consen  157 FLLFLAENLATLP  169 (187)
T ss_pred             HHHHHHHHHhcCC
Confidence            5566666666543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=90.75  E-value=7.5  Score=40.26  Aligned_cols=232  Identities=15%  Similarity=0.100  Sum_probs=133.9

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      -+..|+..+.++|+..|......+.++-..  ....+..+...+-..+.+++............+.+++.+..+....-+
T Consensus       134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk  211 (409)
T PF01603_consen  134 FIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK  211 (409)
T ss_dssp             HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence            378899999999999999999999988665  334455555557778888887655466777888899988875321111


Q ss_pred             HHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          319 VVIDHGAVPIFVKLLASPS-VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      .-...-....++.+.+.+. ......-..++..+...++.....+     +..+++.- ..++..-...-+.-+..+...
T Consensus       212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~W-P~t~s~Kev~FL~el~~il~~  285 (409)
T PF01603_consen  212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHW-PKTNSQKEVLFLNELEEILEV  285 (409)
T ss_dssp             HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS--SS-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCchhHHHHHHHHHHHHHh
Confidence            1111111244555555543 2334455566666665555543332     34444444 333333333344445555544


Q ss_pred             CCCCC-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc---CCHHHHHHhcCC-----CCccchh
Q 037562          398 KPQPP-FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLGH-----SSSSVLT  468 (670)
Q Consensus       398 ~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~-----~~~~v~~  468 (670)
                      -+... ......+...+...+.+.+..|.+.|+..+.|     +.... ++..   .+++.+..-+..     -+..++.
T Consensus       286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~  359 (409)
T PF01603_consen  286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNSRVILPIIFPALYRNSKNHWNQTVRN  359 (409)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            32222 22335677778888889999999888866533     21122 2221   255666666543     3567999


Q ss_pred             HHHHHHHHhhcCCchh
Q 037562          469 PALRTIRNIVKGDDFQ  484 (670)
Q Consensus       469 ~a~~~L~~l~~~~~~~  484 (670)
                      .|..++..+...++..
T Consensus       360 ~a~~vl~~l~~~d~~l  375 (409)
T PF01603_consen  360 LAQNVLKILMEMDPKL  375 (409)
T ss_dssp             HHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHhCHHH
Confidence            9999998888766543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.74  E-value=0.024  Score=52.65  Aligned_cols=77  Identities=25%  Similarity=0.412  Sum_probs=42.4

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeec-cc-ccccccccchhhhcccccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVS-HC-KRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~-~c-~~l~~l~~~~~~~~l~~L~  100 (670)
                      +.+.|+.++|. |.++..  ...++.|+.|.++= .++.++.+ +..+.+|+.|++. +| +.+..+   ..+.++|+|+
T Consensus        20 ~vkKLNcwg~~-L~DIsi--c~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN~I~sldEL---~YLknlpsLr   91 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LDDISI--CEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKNCIESLDEL---EYLKNLPSLR   91 (388)
T ss_pred             HhhhhcccCCC-ccHHHH--HHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhcccccHHHH---HHHhcCchhh
Confidence            56777888873 555443  24678888877743 22333322 2234566666553 22 222222   3456777777


Q ss_pred             eeccccc
Q 037562          101 YMEIESC  107 (670)
Q Consensus       101 ~L~i~~c  107 (670)
                      .|+|..-
T Consensus        92 ~LWL~EN   98 (388)
T KOG2123|consen   92 TLWLDEN   98 (388)
T ss_pred             hHhhccC
Confidence            7777653

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=90.70  E-value=4.8  Score=43.25  Aligned_cols=113  Identities=14%  Similarity=0.151  Sum_probs=83.2

Q ss_pred             HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCC
Q 037562          489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGT  567 (670)
Q Consensus       489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~  567 (670)
                      +...+++.|..-+++. +..+++.+...+..++..-+   ...++.-++|.+..+.. ..+..++.+++.+++.++...+
T Consensus       386 ~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD  461 (700)
T KOG2137|consen  386 VKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD  461 (700)
T ss_pred             HHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence            3456888899999998 99999999999999865322   23456668888887744 6778999999999999985322


Q ss_pred             HHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562          568 HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       568 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      ..   .++  +.+.++.+..+..++.+....+.+..+++-...
T Consensus       462 ~~---~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~  499 (700)
T KOG2137|consen  462 KA---AVL--DELLPILKCIKTRDPAIVMGFLRIYEALALIIY  499 (700)
T ss_pred             HH---HhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc
Confidence            11   111  246667777788999999998888888765433

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.68  E-value=2.2  Score=36.22  Aligned_cols=74  Identities=12%  Similarity=-0.008  Sum_probs=62.5

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC------CChHHHHHHHHHHHHHHHhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC------ADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++..+..-+.++++.++..|+..|-.+..++.+.+...+...+.+..|++++..      .++.|+..++..+...-...
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            455667778899999999999999999999888888888888899999999953      56789999999998876543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.61  E-value=1.7  Score=41.50  Aligned_cols=146  Identities=16%  Similarity=0.161  Sum_probs=101.5

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562          407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  486 (670)
                      ...+...+..|.+.|......++..+..++....+.....+. .++-.+++-+++....|-..|+.+++.+.......+.
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677788889999999999999998776655554444 4666777778888888999999999999765444333


Q ss_pred             HHHhCCChHHHHHhh-ccC--CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562          487 CIINCGALPYFLDML-VHN--HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNAT  563 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l-~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  563 (670)
                      .     -++.++..| ...  ++.-+++.|-.+|..+..+-..       ..+++.|+..+++.++.++..++.++.+..
T Consensus       166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            2     222333332 221  1556888899999888664222       135677888888889999998888777765


Q ss_pred             CC
Q 037562          564 KF  565 (670)
Q Consensus       564 ~~  565 (670)
                      ..
T Consensus       234 ~r  235 (334)
T KOG2933|consen  234 IR  235 (334)
T ss_pred             ee
Confidence            53

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.56  E-value=2.3  Score=38.42  Aligned_cols=115  Identities=14%  Similarity=0.041  Sum_probs=84.9

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc-----CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562          512 EVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN-----TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL  586 (670)
Q Consensus       512 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  586 (670)
                      .|...+.-++ ..|+....++++.+--.+...+..     .-+.+|..+.++++.+..++++...+.+....++|...++
T Consensus       119 naL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         119 NALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            3444444444 447777777887764455555542     2357899999999999999999999999999999999999


Q ss_pred             ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH
Q 037562          587 LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK  637 (670)
Q Consensus       587 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  637 (670)
                      ++..+.--+..++.++..++-++.-..          -.++.+++.-++..
T Consensus       198 me~gSElSktvaifI~qkil~dDvGLq----------YiCqT~eRFyAv~~  238 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDDVGLQ----------YICQTFERFYAVNL  238 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccchhHH----------HHHHHHHHHHHHHH
Confidence            999988888888888888876554333          35666666666554

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=90.27  E-value=19  Score=36.62  Aligned_cols=148  Identities=14%  Similarity=0.097  Sum_probs=90.5

Q ss_pred             HHHHcCCHHHHHHhcCCCC-ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc----cC-CchhHHHHHHHHHH
Q 037562          445 AVIEAGVYPRLVELLGHSS-SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV----HN-HEESIKKEVSWIIS  518 (670)
Q Consensus       445 ~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~----~~-~~~~v~~~a~~~L~  518 (670)
                      .+.+.+-.+.+-+-+...+ .+-|..|+..+..++.........++    ...+..+++    ++ .+..-+..|...++
T Consensus       205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~  280 (370)
T PF08506_consen  205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIG  280 (370)
T ss_dssp             HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence            3555566666666665433 45678888999999864433322222    123333333    22 26678888999999


Q ss_pred             HhhcCCHH------------HHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562          519 NITCGNRE------------QIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL  586 (670)
Q Consensus       519 ~l~~~~~~------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  586 (670)
                      .++.....            ....+....++|.|. --.+..+-++..|+..+..+-..-+++....     +++.++..
T Consensus       281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~  354 (370)
T PF08506_consen  281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNH  354 (370)
T ss_dssp             HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHH
T ss_pred             HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHH
Confidence            99873211            345556666777776 2224567789999999999887655544333     78999999


Q ss_pred             ccCCChHHHHHHHHHH
Q 037562          587 LLCADPKIVTVCLEGL  602 (670)
Q Consensus       587 l~~~~~~v~~~a~~~l  602 (670)
                      +.+++.-|..-|..++
T Consensus       355 L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  355 LQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TTSS-HHHHHHHHHHH
T ss_pred             hCCCCcchhhhhhhhC
Confidence            9999888877766553

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=90.18  E-value=1.4  Score=37.84  Aligned_cols=74  Identities=9%  Similarity=0.041  Sum_probs=64.4

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC-CChHHHHHHHHHHHHHHHhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC-ADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++..+..-+.++++.++..|+..|..++.++.......+...+.+..|..++.. .++.|+..++..+..+....
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence            455667777889999999999999999999998888899999999999999977 78899999999998876543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.89  E-value=39  Score=41.08  Aligned_cols=232  Identities=15%  Similarity=0.068  Sum_probs=120.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      .+..++..+...+ +..+-.+..+++.++..-++  ..++ ++..+.+++-+.+ .++..|..-.-+++.+-.+....-.
T Consensus       877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s  952 (2067)
T KOG1822|consen  877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS  952 (2067)
T ss_pred             HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence            3444556666677 78888899999988872111  1111 2334556665655 4555555444455544322111100


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCC---hhHHH-----------
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSND---EEVLT-----------  426 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~-----------  426 (670)
                      .-.....+..++.+..++.++.|++.++.++..+...............+..+..++-+..   .++..           
T Consensus       953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            0001123666777777777889999999999998877643334444555555555554321   12221           


Q ss_pred             --HHHHHHHHhccCChH-HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc
Q 037562          427 --DACWALSYLSDGTND-KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH  503 (670)
Q Consensus       427 --~al~~L~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~  503 (670)
                        ..+.+++.=...+.. ..-..+....+....-++.++++-++..|+.++-++.-..+.....   .-++..+..++.+
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence              122222222211111 0111222233344444566678889999999998887544432221   1245556666655


Q ss_pred             CCchhHHHHHHHHHHHhh
Q 037562          504 NHEESIKKEVSWIISNIT  521 (670)
Q Consensus       504 ~~~~~v~~~a~~~L~~l~  521 (670)
                      . ..-.|..+..++..+.
T Consensus      1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             h-hhhhhhhHHhhhhHHh
Confidence            5 3334444444444443

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=89.54  E-value=3.2  Score=35.56  Aligned_cols=74  Identities=11%  Similarity=0.033  Sum_probs=63.2

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++..+..-+.++++.++..|+..|..+..++.......+...+.++.|..++. ..++.|+..++..+.......
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            45667777888999999999999999999988888888888999999999986 567789999999998887543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=89.52  E-value=1.6  Score=33.96  Aligned_cols=84  Identities=11%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562          452 YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV  531 (670)
Q Consensus       452 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  531 (670)
                      +...+..+.++.+.+|..++..|..+.....  ....-..+++..+...++++ ++-|--.|..++..++...++     
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~-----   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD-----   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence            3556677888899999999999999998665  12122346788888999999 999999999999999875554     


Q ss_pred             HhcCChHHHHHHhhc
Q 037562          532 IDSGLIGPIVNLLQN  546 (670)
Q Consensus       532 ~~~~~i~~L~~ll~~  546 (670)
                         .+++.|++...+
T Consensus        77 ---~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 ---EVLPILLDEYAD   88 (92)
T ss_pred             ---HHHHHHHHHHhC
Confidence               245555555443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.19  E-value=39  Score=37.15  Aligned_cols=317  Identities=15%  Similarity=0.108  Sum_probs=166.3

Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--ChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhh
Q 037562          276 EVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG--TSENTKVVIDHGAVPIFVKLLASP-SVDVRKQTVWALGNVA  352 (670)
Q Consensus       276 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~  352 (670)
                      .-.....+|.+-  ...++..-+|...++.++.-...  ..+.+..     +-..+++++++. |..++-.++.++.-..
T Consensus       483 ~Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l-----~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~v  555 (978)
T KOG1993|consen  483 KWLQEALLPELA--NDHGNSRIIRRRVAWILGQWVSVQQKLELKPL-----LYCAFLNLLQDQNDLVVRLTTARTLKLVV  555 (978)
T ss_pred             HHHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhheechHhHHHH-----HHHHHHHhcCccccceeehHHHHHHHHhh
Confidence            333444555554  23334356889999999997761  1222222     245788899886 7778888889988877


Q ss_pred             CCCchhHHHHHh--cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc--cCChhHHHHH
Q 037562          353 GDSPRCRDLVLS--QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR--SNDEEVLTDA  428 (670)
Q Consensus       353 ~~~~~~~~~i~~--~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a  428 (670)
                      .+-.-..+.+..  .+....+.+++..-...+.+...+..++.+...-..........+++.+-.+=+  .+.+-++.+.
T Consensus       556 DD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~al  635 (978)
T KOG1993|consen  556 DDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCAL  635 (978)
T ss_pred             hhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHH
Confidence            443222222221  223445566665555667777888888877755321111111222222222222  2345677778


Q ss_pred             HHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCcc---chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC
Q 037562          429 CWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSS---VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN  504 (670)
Q Consensus       429 l~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~---v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~  504 (670)
                      +.++.++...-......+.  .++-.++.+-.+ .+++   ..+.+...-.....+.+.....+.  +.+|.+...+...
T Consensus       636 L~~L~~lV~alg~qS~~~~--~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s  711 (978)
T KOG1993|consen  636 LATLRNLVNALGAQSFEFY--PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS  711 (978)
T ss_pred             HHHHHHHHHHhccCCccch--HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh
Confidence            8888888743221111111  111222222222 2332   233333333333333333333333  3677777777655


Q ss_pred             CchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHH
Q 037562          505 HEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPL  583 (670)
Q Consensus       505 ~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L  583 (670)
                       ....+ .+..++..-.. .+.. .-.-...|+...+.+++.+-..+-....+..+..+...  .+....+...++++.+
T Consensus       712 -te~L~-t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t--~~il~~~~~~~~L~~l  786 (978)
T KOG1993|consen  712 -TENLP-TVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT--NPILGSLLFSPLLSRL  786 (978)
T ss_pred             -hhhHH-HHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--hHHHHhhhcchhhHHH
Confidence             33333 33334333222 2222 11222346788888888766666667777777777763  3455555667777777


Q ss_pred             Hhhc--cCCChHHHHHHHHHHHHHHHh
Q 037562          584 CDLL--LCADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       584 ~~ll--~~~~~~v~~~a~~~l~~l~~~  608 (670)
                      ..-.  +.+.|.+...-+..+.++.-.
T Consensus       787 f~~I~~~~~yP~~~~~yl~vvaRi~l~  813 (978)
T KOG1993|consen  787 FLSIAENDKYPYVMGEYLLVVARISLR  813 (978)
T ss_pred             HHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence            6644  556676766666666665443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=88.69  E-value=2  Score=33.43  Aligned_cols=84  Identities=15%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .+...++.+.++.+-+|..|+..|+++.... +  ....-..+++..+...+++++ +-|-..|+.+|..++...++   
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~---   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD---   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH---
Confidence            3567778888888999999999999998874 2  122223457788889999999 89999999999999985443   


Q ss_pred             HHHhCCChHHHHHhhC
Q 037562          319 VVIDHGAVPIFVKLLA  334 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~  334 (670)
                           .+++.|++...
T Consensus        77 -----~vl~~L~~~y~   87 (92)
T PF10363_consen   77 -----EVLPILLDEYA   87 (92)
T ss_pred             -----HHHHHHHHHHh
Confidence                 24556665443

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.61  E-value=14  Score=42.98  Aligned_cols=253  Identities=11%  Similarity=0.103  Sum_probs=109.7

Q ss_pred             ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHH
Q 037562          380 NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN---DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLV  456 (670)
Q Consensus       380 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~  456 (670)
                      ..+++.....++.++..............+++.+-.+...+   ...+...+..++.-++...-.....-.=.++++.+.
T Consensus       855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~  934 (1610)
T KOG1848|consen  855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL  934 (1610)
T ss_pred             cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence            34566666666666665532211111122333333333222   344555555555555432110000000113445555


Q ss_pred             HhcC-CCCccchhHHHHHHHHhhcCCchhh----HHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562          457 ELLG-HSSSSVLTPALRTIRNIVKGDDFQT----QCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV  531 (670)
Q Consensus       457 ~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~----~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  531 (670)
                      .+-+ ..|..+--.|+..++.++..-....    +..-..+.++.+..  ... ...+..++.|.+-             
T Consensus       935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~l-------------  998 (1610)
T KOG1848|consen  935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIML-------------  998 (1610)
T ss_pred             HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHH-------------
Confidence            4443 3556677777777776653111100    00111223333333  112 3344455555432             


Q ss_pred             HhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc----------------CCChHHH
Q 037562          532 IDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL----------------CADPKIV  595 (670)
Q Consensus       532 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~----------------~~~~~v~  595 (670)
                           +..|.++..++.++||..|+.++..+............++.-....++.+|+                ....+..
T Consensus       999 -----l~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~ 1073 (1610)
T KOG1848|consen  999 -----LVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETS 1073 (1610)
T ss_pred             -----HHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhh
Confidence                 2223333344445566666666555543211111111111112222333332                2223444


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          596 TVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       596 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ...+.++..+|...-+.-.      ..+.+.+..++  .++-+..+..+.++++.-.|++.+++..
T Consensus      1074 ~ltisgIaklf~e~fk~ll------nln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1074 CLTISGIAKLFSENFKLLL------NLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             hhhHHHHHHHHHHHHHHHH------hcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            5667777777654322211      12222222211  1445566678889999988888887763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.61  E-value=0.026  Score=55.31  Aligned_cols=136  Identities=15%  Similarity=0.164  Sum_probs=77.2

Q ss_pred             cCCCCcEEEEecCCCCccccCCCccccccceeeeccccc-ccccccchhhhcccccceecc-----------ccccccce
Q 037562           45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKR-LKIVLTSSIAKTLVRLRYMEI-----------ESCDKITE  112 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~-l~~l~~~~~~~~l~~L~~L~i-----------~~c~~l~~  112 (670)
                      .+.+|..|.+.+- +++.+++....+..|++|+.  |++ |+.+  |+.++.+.+|+-|++           .+|..+++
T Consensus       158 ~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~--~~N~L~tl--P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E  232 (565)
T KOG0472|consen  158 NLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDC--NSNLLETL--PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKE  232 (565)
T ss_pred             HHHHHHHhhcccc-chhhCCHHHHHHHHHHhccc--chhhhhcC--ChhhcchhhhHHHHhhhcccccCCCCCccHHHHH
Confidence            3444555555443 35555555555666666553  233 3333  244455555555544           34444444


Q ss_pred             eccccccc---cccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562          113 IVLVDDVV---AQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       113 ~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      +...+...   .......+++|..|++.+ .+|++.+.+  ..-+.+|++|++++- .+.++|....++ .|+.|-+.+.
T Consensus       233 lh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde--~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  233 LHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDE--ICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             HHhcccHHHhhHHHHhcccccceeeeccc-cccccCchH--HHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence            43211110   112233678888888876 578888774  445678999999874 577888877766 7777766544


Q ss_pred             c
Q 037562          190 D  190 (670)
Q Consensus       190 ~  190 (670)
                      +
T Consensus       308 P  308 (565)
T KOG0472|consen  308 P  308 (565)
T ss_pred             c
Confidence            3

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=88.21  E-value=38  Score=35.87  Aligned_cols=252  Identities=14%  Similarity=0.107  Sum_probs=128.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 037562          251 DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV  330 (670)
Q Consensus       251 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~  330 (670)
                      ..+.+..+...+..+...... ... ...    ..+...+.....++.-..-+.+|..++.+..+. . ..+.++.+.+.
T Consensus        42 p~e~R~~~~~ll~~~i~~~~~-~~~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~  113 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQDS-SSG-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLL  113 (464)
T ss_pred             CHHHHHHHHHHHHHHHHcccc-ccH-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHH
Confidence            356888888888888776421 111 111    122333333322333334445555555533333 2 24566777777


Q ss_pred             HhhCCC---------------------------CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhH
Q 037562          331 KLLASP---------------------------SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSM  383 (670)
Q Consensus       331 ~lL~~~---------------------------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~  383 (670)
                      ..+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+.....+++.
T Consensus       114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d  193 (464)
T PF11864_consen  114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD  193 (464)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence            655310                           12223344455555554332211111111234444445444444444


Q ss_pred             HHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-
Q 037562          384 LRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-  462 (670)
Q Consensus       384 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-  462 (670)
                      .+.+..++-.+..... ........++..|-.....  .+....+-.++.||+...-..       ..+..|..+|.++ 
T Consensus       194 i~~~L~vldaii~y~~-iP~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~  263 (464)
T PF11864_consen  194 IEACLSVLDAIITYGD-IPSESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD  263 (464)
T ss_pred             HHHHHHHHHHHHHcCc-CChHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence            5555555555554431 1122223334444433222  256666777888887543321       3456677777332 


Q ss_pred             -----CccchhHHHHHHHHhhcCCchhhH-HHHhC--CChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562          463 -----SSSVLTPALRTIRNIVKGDDFQTQ-CIINC--GALPYFLDMLVHNHEESIKKEVSWIISNIT  521 (670)
Q Consensus       463 -----~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~--~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~  521 (670)
                           +..+...|+..+..+..+...... .+--.  -+++.+...++.. ++.+-.+....+.++.
T Consensus       264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence                 334567899999988876632211 11112  2678888888877 7777777777777776

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=88.08  E-value=41  Score=36.05  Aligned_cols=149  Identities=13%  Similarity=-0.013  Sum_probs=90.0

Q ss_pred             chhHHHHHHHHH---HHhhcC-CHHHH---HHHHhcCChHHHHH----HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037562          506 EESIKKEVSWII---SNITCG-NREQI---QAVIDSGLIGPIVN----LLQNTEFDTKKEAAWAISNATKFGTHEQIKHL  574 (670)
Q Consensus       506 ~~~v~~~a~~~L---~~l~~~-~~~~~---~~l~~~~~i~~L~~----ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  574 (670)
                      +..++..+...+   .....+ .+...   ...+..++.+.+-.    -....+...|..+..+|+.++... +...  .
T Consensus       334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~-p~l~--~  410 (501)
T PF13001_consen  334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRA-PSLF--S  410 (501)
T ss_pred             ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccC-cccc--c
Confidence            445666665555   444332 23222   23334555555510    112346789999999999999973 3221  1


Q ss_pred             HHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 037562          575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV  654 (670)
Q Consensus       575 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~  654 (670)
                      -+.+.+..|.+-++++.++++..+-+||..+..........      .......    .....+.....+....++..|.
T Consensus       411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~------~~~~~~~----~~~~l~~~~~~~~~~~~R~~av  480 (501)
T PF13001_consen  411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD------EDEQKRL----LLELLLLSYIQSEVRSCRYAAV  480 (501)
T ss_pred             ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc------hhHHHHH----HHHHHHHhhccchhHHHHHHHH
Confidence            23456888888889999999999999999987654432210      0000000    0111223334566677899999


Q ss_pred             HHHHHhcCCcccc
Q 037562          655 EILETYWSSRVIG  667 (670)
Q Consensus       655 ~~l~~~~~~~~~~  667 (670)
                      +-.+..|+.++++
T Consensus       481 k~an~~fpf~d~~  493 (501)
T PF13001_consen  481 KYANACFPFSDVP  493 (501)
T ss_pred             HHHHHhCCccchH
Confidence            9999999998864

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.06  E-value=43  Score=36.22  Aligned_cols=112  Identities=13%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHhhcC---CHHHHHHHHh--cCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH
Q 037562          494 LPYFLDMLVHNHEESIKKEVSWIISNITCG---NREQIQAVID--SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH  568 (670)
Q Consensus       494 ~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  568 (670)
                      ...+..+|++. +...|-....+.+|+..+   +++.....-+  +..+..+.+-+.+..+.+|..|...+..+....+.
T Consensus       301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk  379 (1128)
T COG5098         301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK  379 (1128)
T ss_pred             HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence            56788899998 888998888899998762   2322211111  23456666667788899999999999998875321


Q ss_pred             HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          569 EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       569 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ...   ..+.++....+.+.+...-||++|++.+..++...
T Consensus       380 ~~~---~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H  417 (1128)
T COG5098         380 TVG---RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH  417 (1128)
T ss_pred             ccc---hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence            111   11235667778888889999999999999887543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=87.97  E-value=0.38  Score=49.94  Aligned_cols=153  Identities=18%  Similarity=0.159  Sum_probs=74.2

Q ss_pred             cccEEEeccCcCcccccccccccCC-CCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhh-cccccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMN-NLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAK-TLVRLR  100 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~-~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~-~l~~L~  100 (670)
                      .+..|.+.+- .+.+++.. ...+. +|+.|++++- ++..++.....+++|+.|.+++++ +..+   +... .+++|+
T Consensus       117 ~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l---~~~~~~~~~L~  189 (394)
T COG4886         117 NLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDL---PKLLSNLSNLN  189 (394)
T ss_pred             ceeEEecCCc-ccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhh---hhhhhhhhhhh
Confidence            3555554322 34444432 13342 7777777654 355554455677788888888774 2333   2322 667777


Q ss_pred             eeccccccccceeccc-------------cc--cccccccccccccccccccccccccccccCCcccCCCCccEEeEecC
Q 037562          101 YMEIESCDKITEIVLV-------------DD--VVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYC  165 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~~-------------~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C  165 (670)
                      .|++++.. +..++..             ..  .........++++..|.   +.+.+..........+++|+.|++.++
T Consensus       190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~---l~~n~~~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE---LSNNKLEDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             heeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc---cCCceeeeccchhccccccceeccccc
Confidence            77776543 2222210             00  00000111223333333   222222110112345667888887765


Q ss_pred             CCccccccCCcCCCCccceeeee
Q 037562          166 PNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       166 ~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                       .+..++. .....+|+.|++++
T Consensus       266 -~i~~i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         266 -QISSISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             -ccccccc-ccccCccCEEeccC
Confidence             3455554 55567777776644

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=87.81  E-value=31  Score=37.04  Aligned_cols=288  Identities=13%  Similarity=0.138  Sum_probs=145.0

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      ++..+=+.+.++++.++.-|+-.+.-..++..++.      .-++..|...+++++ ..++..|+.-|+-.-.++  .++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            35555566666777777666665554433321111      113445566677777 688888877777654422  233


Q ss_pred             HHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562          319 VVIDHGAVPIFVKLLASPS--VDVRKQTVWALGNVAGDSP--RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF  394 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~--~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  394 (670)
                      .+.     ..|..++.+.+  .++..-|.-+|+.+..+..  +....     .+..++..-.........+.....|+-+
T Consensus       487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~-----ilqtlmekse~El~d~~~RFL~LGL~ll  556 (878)
T KOG2005|consen  487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSS-----ILQTLMEKSETELEDQWFRFLALGLALL  556 (878)
T ss_pred             HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHH-----HHHHHHHhhhhhhhchHHHHHHHHHHHH
Confidence            322     24555665533  4566667777777664332  21111     1223332221111223333333333333


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc---cchhHHH
Q 037562          395 CRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS---SVLTPAL  471 (670)
Q Consensus       395 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~v~~~a~  471 (670)
                      .....        ..+...+..++.-...++..+-..+...+.....+.-.+-+    ..+..+-...+.   ..+..|+
T Consensus       557 flgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~av  624 (878)
T KOG2005|consen  557 FLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAV  624 (878)
T ss_pred             Hhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchh
Confidence            33321        12222333333223333333333333333221111110100    112222222111   1222444


Q ss_pred             HHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhH
Q 037562          472 RTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDT  551 (670)
Q Consensus       472 ~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  551 (670)
                      --++-++.+.+-..+.     .+..+-.++..+ ++.+|+..-.+++-++..+|+       .++++.|-+...+.|.++
T Consensus       625 LgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq-------~~vlDtLsk~shd~D~ev  691 (878)
T KOG2005|consen  625 LGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQ-------VNVLDTLSKFSHDGDLEV  691 (878)
T ss_pred             hhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCc-------chHHHHHHHhccCcchHH
Confidence            4455555544433332     345666778888 899999988888888777775       246778888888889999


Q ss_pred             HHHHHHHHHHhcCCCCHHH
Q 037562          552 KKEAAWAISNATKFGTHEQ  570 (670)
Q Consensus       552 ~~~a~~aL~~l~~~~~~~~  570 (670)
                      ..+|+.+++-+....++..
T Consensus       692 a~naIfamGLiGAGTnNAR  710 (878)
T KOG2005|consen  692 AMNAIFAMGLIGAGTNNAR  710 (878)
T ss_pred             HHHHHHHhccccCCcchHH
Confidence            9999999988776544433

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.69  E-value=37  Score=38.46  Aligned_cols=395  Identities=14%  Similarity=0.121  Sum_probs=195.0

Q ss_pred             hcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CChhhHHHHHhCC
Q 037562          247 VWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS--GTSENTKVVIDHG  324 (670)
Q Consensus       247 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~~  324 (670)
                      +++++.+.+...+..+.++-... .++....-+.--+|.++--+..-. ..+|...+.++.....  .....++      
T Consensus       476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPeqE------  547 (2799)
T KOG1788|consen  476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPEQE------  547 (2799)
T ss_pred             HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcHHH------
Confidence            45778888888888888775432 333333334556777777666554 4566555554433221  0111111      


Q ss_pred             ChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC---ChhHHHHHHHHHHhhhcCCCC
Q 037562          325 AVPIFVKLLASP-SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA---NLSMLRTATWTLFNFCRGKPQ  400 (670)
Q Consensus       325 ~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~~~  400 (670)
                       +-.|+-+|+.+ +..++...+.....+...+...++.+.+-|.++.|...++++.   .++. ...   .......++.
T Consensus       548 -LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq-ysg---vsehydrnps  622 (2799)
T KOG1788|consen  548 -LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ-YSG---VSEHYDRNPS  622 (2799)
T ss_pred             -HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch-hhh---HHHHhhcCCC
Confidence             22455666653 3455666666667777777778888888898888877774421   0100 000   1111111111


Q ss_pred             C-Chhhh---hhhHHHHHHhhccCC--hhHH------HHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchh
Q 037562          401 P-PFNQV---RPALPVLAQLIRSND--EEVL------TDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT  468 (670)
Q Consensus       401 ~-~~~~~---~~~i~~L~~lL~~~~--~~v~------~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~  468 (670)
                      . .+...   ...+-.--++.++++  ..+.      .-.-.+|..+..++.++...+.+..++..++.++-  +++-|.
T Consensus       623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehRS  700 (2799)
T KOG1788|consen  623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRS  700 (2799)
T ss_pred             CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHH
Confidence            1 00000   011101111222211  1111      11134555666666777777888888888888884  445677


Q ss_pred             HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-------c----hhHHHHHHHHHHHhhcCCHHHHHHHHhcCCh
Q 037562          469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-------E----ESIKKEVSWIISNITCGNREQIQAVIDSGLI  537 (670)
Q Consensus       469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-------~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i  537 (670)
                      ..++++..+....+.+..    ..-+-.+++.|+++.       +    ........+++..+..-+......+.+++++
T Consensus       701 slLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGF  776 (2799)
T KOG1788|consen  701 SLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGF  776 (2799)
T ss_pred             HHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccH
Confidence            888888888766554322    112334555555521       1    1233444556666655444555566777877


Q ss_pred             HHHHHHhhc----------CChhHHHHHHHHHH---HhcCCCCHH-------------HHHHHHHcC---------CcHH
Q 037562          538 GPIVNLLQN----------TEFDTKKEAAWAIS---NATKFGTHE-------------QIKHLVREG---------CVKP  582 (670)
Q Consensus       538 ~~L~~ll~~----------~~~~v~~~a~~aL~---~l~~~~~~~-------------~~~~l~~~~---------~i~~  582 (670)
                      ..|...+..          +|.-+-..-...|.   .++...++.             ....+.+.|         .+..
T Consensus       777 slLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viql  856 (2799)
T KOG1788|consen  777 SLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQL  856 (2799)
T ss_pred             HHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHH
Confidence            777766541          11111111111111   111111111             222223333         1111


Q ss_pred             HHhh-ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562          583 LCDL-LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       583 L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      +.++ ++.--+.....-..|...+++.+.+........+++++..+.+-.+|+...|-+-.-...+.++-.-..+++..
T Consensus       857 llElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSl  935 (2799)
T KOG1788|consen  857 LLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESL  935 (2799)
T ss_pred             HHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            1111 11111111122233445555554433222222477888888888999999876655555566666666666554

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=87.54  E-value=4.7  Score=34.12  Aligned_cols=75  Identities=12%  Similarity=-0.055  Sum_probs=62.7

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC---CChHHHHHHHHHHHHHHHhhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC---ADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      ++..|..-+.++++.++..|+..|-.+..++.+.+...+.....+..|+.++..   .++.|+..++..+........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            456677778889999999999999999999888888888887788889998864   578899999999988876544

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=87.52  E-value=0.37  Score=25.94  Aligned_cols=18  Identities=22%  Similarity=0.241  Sum_probs=13.4

Q ss_pred             CccEEeEecCCCccccccC
Q 037562          156 SLEILVVNYCPNMKIFSGG  174 (670)
Q Consensus       156 ~L~~L~i~~C~~l~~~p~~  174 (670)
                      +|+.|++++| +++.+|.+
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            4778888888 77777765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=87.04  E-value=3.1  Score=37.62  Aligned_cols=137  Identities=7%  Similarity=0.101  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC----CchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHH
Q 037562          469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN----HEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNL  543 (670)
Q Consensus       469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~----~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~l  543 (670)
                      .|+..+..++. .++....+.++.+--.+..++...    .-.-+|..+.++++.+.. +++..+..+....++|.+.++
T Consensus       119 naL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         119 NALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            35555555554 455555566665544444454322    134578889999999987 566777778889999999999


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH--------cCCcHHH-HhhccCCChHHHHHHHHHHHHHHHh
Q 037562          544 LQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR--------EGCVKPL-CDLLLCADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       544 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~i~~L-~~ll~~~~~~v~~~a~~~l~~l~~~  608 (670)
                      ++.+++--+..|+..+..+...  +...+++.+        +..+..+ .++.+.....+.+.++++..++...
T Consensus       198 me~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            9999888888888888888774  344444333        1122222 2234566677777787777666544

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=86.90  E-value=9.3  Score=33.55  Aligned_cols=146  Identities=10%  Similarity=0.061  Sum_probs=83.5

Q ss_pred             hhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc-CCCCccchhHHHHHHHHhhcCCch
Q 037562          406 VRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL-GHSSSSVLTPALRTIRNIVKGDDF  483 (670)
Q Consensus       406 ~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~  483 (670)
                      ....++.+..+++.+ +..+|..++++++.+..-++...+.+....  +   ..- ...+......... ......    
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~---~~~~~~~~~~~~~~~l~-~~~~~~----   77 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--D---SKSSENSNDESTDISLP-MMGISP----   77 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--C---ccccccccccchhhHHh-hccCCC----
Confidence            356778888888866 689999999999999877765544222110  0   000 0111111111111 111111    


Q ss_pred             hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562          484 QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA  562 (670)
Q Consensus       484 ~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  562 (670)
                      ..+...-.-++..|+.+|++..-..-...++.++.++... ......++-  .++|.+++.+++.+...++....-|+.+
T Consensus        78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            1222333346778888888774444555677777776642 222233332  3889999999877667777777666665


Q ss_pred             c
Q 037562          563 T  563 (670)
Q Consensus       563 ~  563 (670)
                      .
T Consensus       156 v  156 (160)
T PF11865_consen  156 V  156 (160)
T ss_pred             H
Confidence            4

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.68  E-value=0.34  Score=45.03  Aligned_cols=110  Identities=17%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             CCCCcEEEEecCCCCccccCCCccccccceeeecccc-cccccccchhhhcccccceecccccc--ccceeccccccccc
Q 037562           46 MNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCK-RLKIVLTSSIAKTLVRLRYMEIESCD--KITEIVLVDDVVAQ  122 (670)
Q Consensus        46 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~-~l~~l~~~~~~~~l~~L~~L~i~~c~--~l~~~~~~~~~~~~  122 (670)
                      +..|+.|.+.+|. |.++ .+...+|+|+.|.++.-. .... .....+..+|+|++|.+++-.  -++.+         
T Consensus        42 ~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl---------  109 (260)
T KOG2739|consen   42 FVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKDLSTL---------  109 (260)
T ss_pred             ccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCcccccccc---------
Confidence            4555555555553 2111 122345677777765331 1110 011233455777777665432  11111         


Q ss_pred             ccccccccccccccccccccccccc--CCcccCCCCccEEeEecCCCc
Q 037562          123 DEVITFRELKELNLLQMQNLISFCS--GNCAFTFPSLEILVVNYCPNM  168 (670)
Q Consensus       123 ~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~i~~C~~l  168 (670)
                      .....+++|..|.+.+|+-.. +-.  ......+|+|..|+-.++..=
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             chhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence            122346667777777776554 100  011234677777776666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.24  E-value=0.13  Score=48.12  Aligned_cols=54  Identities=17%  Similarity=0.254  Sum_probs=29.7

Q ss_pred             CCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccc
Q 037562           46 MNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIE  105 (670)
Q Consensus        46 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~  105 (670)
                      +.+.++|+.+||. |..+.- ...+|.|+.|.++ -.+++.+   ..+..+.+|++|++.
T Consensus        18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLS-vNkIssL---~pl~rCtrLkElYLR   71 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLS-VNKISSL---APLQRCTRLKELYLR   71 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHH-HHhcccceeEEee-ccccccc---hhHHHHHHHHHHHHH
Confidence            4566677777774 433321 1235666766665 2344444   445566666666664

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=86.17  E-value=39  Score=33.87  Aligned_cols=159  Identities=16%  Similarity=0.184  Sum_probs=112.7

Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhc-CC-hHHHHHHhhc-----CC--------hhHHHHHHH
Q 037562          494 LPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDS-GL-IGPIVNLLQN-----TE--------FDTKKEAAW  557 (670)
Q Consensus       494 ~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~~-i~~L~~ll~~-----~~--------~~v~~~a~~  557 (670)
                      ++.+...|.+. ...+...+...+..++. ........+... ++ .+.+-.++..     ++        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            77888889888 77888899999999988 665666666542 22 3344444431     11        289999999


Q ss_pred             HHHHhcCCCCHHHHHHHHH-cCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562          558 AISNATKFGTHEQIKHLVR-EGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE  636 (670)
Q Consensus       558 aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  636 (670)
                      .+..+...+++.....+++ .+.+..+.+-+..++++++..++..+..-+-.+....+        ......| ....+.
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r--------~~K~~~f-n~~~L~  207 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR--------STKCKLF-NEWTLS  207 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh--------hhhhhhc-CHHHHH
Confidence            9999998888887777765 56688888888888889999999999864443332221        1123333 445678


Q ss_pred             HHHHhhcCCCH----HHHHHHHHHHHHhcC
Q 037562          637 KIENLQSHDDN----GISEKAVEILETYWS  662 (670)
Q Consensus       637 ~l~~L~~~~~~----~v~~~a~~~l~~~~~  662 (670)
                      .|..|-...++    .+.+.+.+.+..+..
T Consensus       208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  208 QLASLYSRDGEDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             HHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence            88888777777    889999988887653

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.04  E-value=6.4  Score=33.31  Aligned_cols=74  Identities=12%  Similarity=0.011  Sum_probs=60.9

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC--hHHHHHHHHHHHHHHHhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD--PKIVTVCLEGLENILKVG  609 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~  609 (670)
                      ++..+..-+.++++.++..|+..|..+..++...+...+...+.+..|..++....  +.|+..++..+.......
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            45566777788999999999999999999988888888888889999999986643  338999988888876543

Unpublished observations. Domain of unknown function.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=85.70  E-value=24  Score=31.96  Aligned_cols=71  Identities=18%  Similarity=0.249  Sum_probs=55.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC  358 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  358 (670)
                      .++.++++..+++ ..++..|+..+..+....--+=     ...+|.++.+..++++.++..|...+..+....+..
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            4667788888888 8999999999998876321110     136899999999999999999999999998655543

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=85.33  E-value=2.9  Score=46.18  Aligned_cols=127  Identities=15%  Similarity=0.215  Sum_probs=90.6

Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562          466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ  545 (670)
Q Consensus       466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~  545 (670)
                      ++..+.-++++++-..+...+     ..+|.+++-|.......+|...+.+++.+|.....     +-...+|.+-..|.
T Consensus       947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASLC 1016 (1529)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHhc
Confidence            677788889999875554333     46888999888775777888888888888764322     22357899999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC--cHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          546 NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC--VKPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       546 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++++-||+++...|.++.+.+-      +.-.|.  +..+..++ +.+++++.-+--.+..++...
T Consensus      1017 Dp~~iVRrqt~ilL~rLLq~~~------vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFGI------VKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             CchHHHHHHHHHHHHHHHhhhh------hhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999988531      111221  33333343 577888888877787777653

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.02  E-value=2.3  Score=39.14  Aligned_cols=84  Identities=14%  Similarity=0.192  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCcHHHHHHcC-------CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH-HhC
Q 037562          252 NSLQLEATTLFINLLSFDRSPPIDEVIQSG-------VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVV-IDH  323 (670)
Q Consensus       252 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g-------~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~  323 (670)
                      -+-|..|+.+|+++.-.  ..+++.++.++       ++..|++++....++-.|+.|+-.|.+++.++......+ .+.
T Consensus       138 lSPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~  215 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK  215 (257)
T ss_pred             CCHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence            36789999999999765  34555555544       455667777666558999999999999999776666444 467


Q ss_pred             CChHHHHHhhCCCC
Q 037562          324 GAVPIFVKLLASPS  337 (670)
Q Consensus       324 ~~i~~L~~lL~~~~  337 (670)
                      +.|..|+.++.+.+
T Consensus       216 ~~i~~Li~FiE~a~  229 (257)
T PF12031_consen  216 PCISHLIAFIEDAE  229 (257)
T ss_pred             chHHHHHHHHHHHH
Confidence            89999999997643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=84.88  E-value=2.4  Score=38.49  Aligned_cols=72  Identities=11%  Similarity=0.088  Sum_probs=55.4

Q ss_pred             hhhHHHHHHhhc---------cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          407 RPALPVLAQLIR---------SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       407 ~~~i~~L~~lL~---------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                      .+++..|+..|.         ..+......++.|+..+.....+....+...+++..++..|.+++..++..|+.+|+.+
T Consensus       106 ~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l  185 (187)
T PF06371_consen  106 LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL  185 (187)
T ss_dssp             HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            455666665554         24567889999999999987766666555679999999999999999999999999887


Q ss_pred             h
Q 037562          478 V  478 (670)
Q Consensus       478 ~  478 (670)
                      |
T Consensus       186 c  186 (187)
T PF06371_consen  186 C  186 (187)
T ss_dssp             H
T ss_pred             H
Confidence            6

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=84.64  E-value=3.4  Score=35.40  Aligned_cols=74  Identities=15%  Similarity=0.093  Sum_probs=61.3

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS  311 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  311 (670)
                      +++..+.+.+++.++.++..|+..|-.+..........++.+.+++..|+.++.....+.|+..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999998888765455567777888999999999754447999999998888775

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.40  E-value=3.5  Score=35.35  Aligned_cols=74  Identities=18%  Similarity=0.127  Sum_probs=62.3

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS  311 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  311 (670)
                      +++..+.+.+++.++.++..|+..|-.++.........++....++..|+.++.....+.|+..+...+...+.
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            55788889999999999999999999988876555667788888999999999884338999999999988875

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.20  E-value=14  Score=35.74  Aligned_cols=144  Identities=19%  Similarity=0.191  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--Ch
Q 037562          297 QLQFKAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLA----SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQG--AL  368 (670)
Q Consensus       297 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i  368 (670)
                      +-+.-++..+.-++. ++.....+...+  +...+..++.    ...+..+-.++++++|+..+.+ .+..+....  .+
T Consensus        78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence            345556666655555 555555554332  2334444332    2567888899999999987655 455554432  23


Q ss_pred             HHHHHHhcccC---ChhHHHHHHHHHHhhhcCC--CCCChhhhhhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCChH
Q 037562          369 IPLLAELNENA---NLSMLRTATWTLFNFCRGK--PQPPFNQVRPALPVLAQLIR--SNDEEVLTDACWALSYLSDGTND  441 (670)
Q Consensus       369 ~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~  441 (670)
                      ...+..+....   +..++..++..+.|++-..  ...........+..+...+.  ..|+++...++.+++++....+.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            33333332332   5678888888899987543  11122223345666666433  25899999999999999966554


Q ss_pred             H
Q 037562          442 K  442 (670)
Q Consensus       442 ~  442 (670)
                      .
T Consensus       236 ~  236 (268)
T PF08324_consen  236 A  236 (268)
T ss_dssp             H
T ss_pred             H
Confidence            3

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.96  E-value=0.64  Score=26.25  Aligned_cols=16  Identities=31%  Similarity=0.567  Sum_probs=12.6

Q ss_pred             CCCccEEeEecCCCcc
Q 037562          154 FPSLEILVVNYCPNMK  169 (670)
Q Consensus       154 ~~~L~~L~i~~C~~l~  169 (670)
                      +|+|+.|++.+|+++.
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4778888888888765

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.65  E-value=59  Score=36.01  Aligned_cols=185  Identities=13%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc-C-------CHHHHHHhcCCCCccchhHHHHH
Q 037562          402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA-G-------VYPRLVELLGHSSSSVLTPALRT  473 (670)
Q Consensus       402 ~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~-------~i~~L~~lL~~~~~~v~~~a~~~  473 (670)
                      ........+|.++..|+.+..-+-.+|+.++-.+..-.+.....+... .       .+..+...++.+...--.....+
T Consensus       492 ~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKa  571 (960)
T KOG1992|consen  492 GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKA  571 (960)
T ss_pred             ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHH
Confidence            344456788999999999999999999999987763333211111111 1       11222233333332222223333


Q ss_pred             HHHhhcCCchhhHHHH---hCCChHHHHHhhccCCchhHHH---HHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhc
Q 037562          474 IRNIVKGDDFQTQCII---NCGALPYFLDMLVHNHEESIKK---EVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQN  546 (670)
Q Consensus       474 L~~l~~~~~~~~~~l~---~~~~~~~L~~~l~~~~~~~v~~---~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~  546 (670)
                      +..+..-.++.+....   -.+..+.+.+.-+++.+|..-.   ++..++.+.+. .++.....+ +...+|.+..++..
T Consensus       572 ImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~e  650 (960)
T KOG1992|consen  572 IMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSE  650 (960)
T ss_pred             HHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHH
Confidence            3333222222221111   0122233333444443444333   33333333333 344433333 34567777777765


Q ss_pred             CChhHHHHHHHHHHHhcCCC---CHHHHHH---------HH-HcCCcHHHHhhc
Q 037562          547 TEFDTKKEAAWAISNATKFG---THEQIKH---------LV-REGCVKPLCDLL  587 (670)
Q Consensus       547 ~~~~v~~~a~~aL~~l~~~~---~~~~~~~---------l~-~~~~i~~L~~ll  587 (670)
                      +-.+.--.+...++.+....   .++....         ++ ..|-++++++++
T Consensus       651 DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl  704 (960)
T KOG1992|consen  651 DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLL  704 (960)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHH
Confidence            55555555555555554332   2222222         22 267788888877

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=83.63  E-value=6.1  Score=34.95  Aligned_cols=112  Identities=24%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhcccCChhHHHHHHHHHHhhhcCC---C
Q 037562          325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNENANLSMLRTATWTLFNFCRGK---P  399 (670)
Q Consensus       325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~---~  399 (670)
                      .+..+..++++.++.-|-.++..+.-.+..++  .+.+.+.+  .+..++..+.+..+..+.+.++.++..+....   +
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            45678888999888888888888888876542  23333332  37788888877777788889998888877544   3


Q ss_pred             CCChhhh----hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          400 QPPFNQV----RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       400 ~~~~~~~----~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                      .-.....    .++++.++++++.  ......++.++..+....+
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence            2222222    3445555555543  5666677777777665444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=81.85  E-value=0.54  Score=44.51  Aligned_cols=124  Identities=16%  Similarity=0.134  Sum_probs=70.1

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      .|.+++++.- .++.+.. .....|.++.|.++.-. +..+. +...+++|.+|++++- .|..+  ..|-..|-+.+.|
T Consensus       285 ~LtelDLS~N-~I~~iDE-SvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N-~Ls~~--~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  285 ELTELDLSGN-LITQIDE-SVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGN-LLAEC--VGWHLKLGNIKTL  357 (490)
T ss_pred             hhhhcccccc-chhhhhh-hhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccc-hhHhh--hhhHhhhcCEeee
Confidence            5666666532 2333333 34678899999987754 32332 3567889999999865 33333  1455567788888


Q ss_pred             ccccccccceeccccccccccccccccccccccccc--cccccccccCCcccCCCCccEEeEecCC
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQ--MQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      .+.+-. ++.+-         ....+=+|..|++.+  -.+|...   ...+.+|+|+.+.+.+-|
T Consensus       358 ~La~N~-iE~LS---------GL~KLYSLvnLDl~~N~Ie~ldeV---~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  358 KLAQNK-IETLS---------GLRKLYSLVNLDLSSNQIEELDEV---NHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ehhhhh-Hhhhh---------hhHhhhhheeccccccchhhHHHh---cccccccHHHHHhhcCCC
Confidence            775421 22211         112234455555543  1223222   225568899988888766

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=81.62  E-value=46  Score=31.57  Aligned_cols=96  Identities=19%  Similarity=0.298  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-------HHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 037562          253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDY-------PQLQFKAAWALTNIASGTSENTKVVIDHGA  325 (670)
Q Consensus       253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  325 (670)
                      ...+.|+..|..+-            +...++.++++++.++.       .-+-+...+++..++            .|-
T Consensus        57 ~~~~~a~~LLaq~r------------e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~  112 (249)
T PF06685_consen   57 NLHFYALYLLAQFR------------EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGD  112 (249)
T ss_pred             HHHHHHHHHHHHHh------------hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCC
Confidence            34566666666552            22378999999987662       012233333444443            466


Q ss_pred             hHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 037562          326 VPIFVKLLASP--SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE  374 (670)
Q Consensus       326 i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~  374 (670)
                      ++.+.+++.++  +.-+|..|+.+|..++...+..|+.+.+  .+..++..
T Consensus       113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~  161 (249)
T PF06685_consen  113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNY  161 (249)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHH
Confidence            88888888875  4678899999999999888888888765  35555554

The function of this family is unknown.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=81.47  E-value=5.3  Score=33.79  Aligned_cols=74  Identities=12%  Similarity=0.026  Sum_probs=59.7

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHH-HHHHHHHHHHHHcC
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-LQFKAAWALTNIAS  311 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~-v~~~a~~~L~~l~~  311 (670)
                      +++..+.+.+++.++.++..|+..|-.+..........++...+++..|..++....... |+..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            557888899999999999999999998887754555667778889999999988765334 88888888877765

Unpublished observations. Domain of unknown function.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=81.36  E-value=9.1  Score=32.75  Aligned_cols=74  Identities=11%  Similarity=0.017  Sum_probs=59.1

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC-ChH---HHHHHHHHHHHHHHhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA-DPK---IVTVCLEGLENILKVG  609 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~---v~~~a~~~l~~l~~~~  609 (670)
                      ++..|..-+.++++.++..|+..|..+..++.+.+...+.....+..|..++.+. ...   |+..++..+...-...
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            4556777788899999999999999999988778888877777888899988543 333   8899988888776554

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=81.09  E-value=51  Score=31.27  Aligned_cols=115  Identities=16%  Similarity=0.185  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhHHHHHhcCChH
Q 037562          298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVD--------VRKQTVWALGNVAGDSPRCRDLVLSQGALI  369 (670)
Q Consensus       298 v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~--------v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  369 (670)
                      ....|+..|+.+-.           ..+++.++++++.++..        +-+....++..++            .|-+.
T Consensus        58 ~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~  114 (249)
T PF06685_consen   58 LHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIE  114 (249)
T ss_pred             HHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHH
Confidence            44555556555533           46789999999865542        1222223333333            24466


Q ss_pred             HHHHHhcccC-ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562          370 PLLAELNENA-NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYL  435 (670)
Q Consensus       370 ~Ll~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l  435 (670)
                      .+..++.+.. +.-++..|+.+|..+....+..+...+.-.-..+-..+..++..+....+..+..+
T Consensus       115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL  181 (249)
T PF06685_consen  115 PLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL  181 (249)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc
Confidence            6777774333 45677799999999999887666655554444444445545444444444444433

The function of this family is unknown.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=81.04  E-value=6  Score=33.66  Aligned_cols=73  Identities=11%  Similarity=0.025  Sum_probs=60.1

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC------CCCHHHHHHHHHHHHHHcC
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR------QDYPQLQFKAAWALTNIAS  311 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~------~~~~~v~~~a~~~L~~l~~  311 (670)
                      +++..+.+.+++.++.++..|+..|-.+..........++...+++..+++++..      .+ +.|+..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTS-EKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCC-HHHHHHHHHHHHHHHH
Confidence            4577888999999999999999999888876655666778888899999999963      34 7899999888887765

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=80.95  E-value=32  Score=30.38  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH--GAVPIFVKLLAS-PSVDVRKQTVWALGNVA---GDS  355 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~---~~~  355 (670)
                      .+..+.+++++.+ ++-|-.++..+...+..++  .+.+.+.  ..+..++..|+. ..+.+.+.++.++..+.   .+.
T Consensus        26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4566788888888 7888888888888876331  2333222  356777778876 45677888888888876   444


Q ss_pred             chhHHHHHhcC---ChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC
Q 037562          356 PRCRDLVLSQG---ALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ  400 (670)
Q Consensus       356 ~~~~~~i~~~~---~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~  400 (670)
                      ++....+....   .+..+++++.+   ......++.+|..+....|.
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCc
Confidence            55433332221   23344444421   45556677777776665443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=80.91  E-value=6  Score=36.60  Aligned_cols=85  Identities=13%  Similarity=0.229  Sum_probs=61.7

Q ss_pred             cchhHHHHHHHHhhcCCchhhHHHHhC-------CChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH-HhcCC
Q 037562          465 SVLTPALRTIRNIVKGDDFQTQCIINC-------GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV-IDSGL  536 (670)
Q Consensus       465 ~v~~~a~~~L~~l~~~~~~~~~~l~~~-------~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~~~  536 (670)
                      +-+.-|+.+++.++... .....+...       .++..|..++....++..|+.|...|.+++.++......+ .+.+.
T Consensus       139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            45788999999998633 223333322       3566677777777688999999999999999877665444 47888


Q ss_pred             hHHHHHHhhcCChh
Q 037562          537 IGPIVNLLQNTEFD  550 (670)
Q Consensus       537 i~~L~~ll~~~~~~  550 (670)
                      +..|+.++++.+..
T Consensus       218 i~~Li~FiE~a~~~  231 (257)
T PF12031_consen  218 ISHLIAFIEDAEQN  231 (257)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999865443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=80.42  E-value=35  Score=37.94  Aligned_cols=157  Identities=17%  Similarity=0.211  Sum_probs=105.4

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .|..++..+.+.+..+..++-..+......+ .+.       -++..|+...-+...    ..|+.+|..+-.  |..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSD-REP-------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chH-------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence            4778999999999888888888777665443 221       135666665444331    234445554432  3211 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                           .++..|-..+..  +.-|-.++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|.-|.-.-
T Consensus        70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 234455556654  4677789999999998877777888888999999999988899999999998888887665


Q ss_pred             CCCChhhhhhhHHHHHHhh
Q 037562          399 PQPPFNQVRPALPVLAQLI  417 (670)
Q Consensus       399 ~~~~~~~~~~~i~~L~~lL  417 (670)
                      +.........++.....++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            5444444444555555555

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.31  E-value=1e+02  Score=34.28  Aligned_cols=400  Identities=12%  Similarity=0.163  Sum_probs=193.8

Q ss_pred             HHHHHHhcCC--ChHHHHHHHHHHHHHhcCC---CCCcHHHHHHcC---CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 037562          241 PAMVDGVWSD--DNSLQLEATTLFINLLSFD---RSPPIDEVIQSG---VVPRFVEFLMRQDYPQLQFKAAWALTNIASG  312 (670)
Q Consensus       241 ~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~g---~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  312 (670)
                      -.+++.+.++  |++++..|+-.+.|....+   ..+....+.+..   +-..++.++-+.. ..+|.+-..+++.++..
T Consensus        40 l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~  118 (960)
T KOG1992|consen   40 LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKR  118 (960)
T ss_pred             HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcc
Confidence            4566666533  6788999999999887631   111111222211   2233456665655 68999999999999864


Q ss_pred             C-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhH------HHHHhcC-ChHHHHHHhcc------
Q 037562          313 T-SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG-DSPRCR------DLVLSQG-ALIPLLAELNE------  377 (670)
Q Consensus       313 ~-~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~------~~i~~~~-~i~~Ll~~l~~------  377 (670)
                      + |+...     ..++-|+.-+++.|-.+....+.+-..+.. ..++.|      +.....+ .-.++..++..      
T Consensus       119 DFP~kWp-----tLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~  193 (960)
T KOG1992|consen  119 DFPDKWP-----TLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQ  193 (960)
T ss_pred             ccchhhH-----HHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence            4 33332     236677777776665444444333333331 111111      1111101 12233333311      


Q ss_pred             --cCChhHH-------HHHHHHHHhhhcCC-CCCChhhhhhhHHHHHHhhccCC-------------hhHHHHHHHHHHH
Q 037562          378 --NANLSML-------RTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSND-------------EEVLTDACWALSY  434 (670)
Q Consensus       378 --~~~~~~~-------~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~-------------~~v~~~al~~L~~  434 (670)
                        ..+....       .-.+.....|...+ |.--...+...++...+++..++             ..++..++..+.-
T Consensus       194 ~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~L  273 (960)
T KOG1992|consen  194 RHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNL  273 (960)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHH
Confidence              1122211       12222333333332 11111223556666666665221             2456666776666


Q ss_pred             hccCChHHHHHHHHcCCHHHHHHhcCCCCcc-----chhHHHHHHHHhhcCCchh--------h----------------
Q 037562          435 LSDGTNDKVQAVIEAGVYPRLVELLGHSSSS-----VLTPALRTIRNIVKGDDFQ--------T----------------  485 (670)
Q Consensus       435 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-----v~~~a~~~L~~l~~~~~~~--------~----------------  485 (670)
                      .+...++..+.++. .++.....++.+..+.     ....|+..|.+.+......        .                
T Consensus       274 Y~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~  352 (960)
T KOG1992|consen  274 YATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE  352 (960)
T ss_pred             HHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch
Confidence            66655555554444 4555555666553322     4555667777766422111        1                


Q ss_pred             --HHHHhCCChHHHHHhhccCCchh-HHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh---cCChhHHHHHHHHH
Q 037562          486 --QCIINCGALPYFLDMLVHNHEES-IKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ---NTEFDTKKEAAWAI  559 (670)
Q Consensus       486 --~~l~~~~~~~~L~~~l~~~~~~~-v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL  559 (670)
                        .++++.+-++.+-.-+... |.+ -|+.|+..++.++...+.....++.. .+..+++-..   +.+..-+..|.+.+
T Consensus       353 eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~  430 (960)
T KOG1992|consen  353 EDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLV  430 (960)
T ss_pred             hhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhh
Confidence              1122333444454555544 443 35667777888876544433333321 2333333222   34566677777777


Q ss_pred             HHhcCCCCHHH-----------HHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHH
Q 037562          560 SNATKFGTHEQ-----------IKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQL  628 (670)
Q Consensus       560 ~~l~~~~~~~~-----------~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  628 (670)
                      ..++..+....           ...+....+.+.|.+-=-.+.|-++..+++-+.. ++..-            .  .+ 
T Consensus       431 talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~-FR~ql------------~--~~-  494 (960)
T KOG1992|consen  431 TALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYT-FRNQL------------G--KE-  494 (960)
T ss_pred             HHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeee-ecccC------------C--hH-
Confidence            77776532111           0011111122221111112334444444433322 21110            0  11 


Q ss_pred             HHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCccc
Q 037562          629 VEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRVI  666 (670)
Q Consensus       629 ~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~  666 (670)
                       .-...++.+......++.-|+.+|+..+++++--++-
T Consensus       495 -~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~  531 (960)
T KOG1992|consen  495 -HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN  531 (960)
T ss_pred             -HHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence             1223367777778888899999999999998755443

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=80.27  E-value=9  Score=32.43  Aligned_cols=74  Identities=19%  Similarity=0.094  Sum_probs=59.3

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHcC
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ--DYPQLQFKAAWALTNIAS  311 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~v~~~a~~~L~~l~~  311 (670)
                      +++..|.+.++++++.++..|+..|-.+...........+....++..++.++...  ..+.|+..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            56788899999999999999999999888775344555666668888899999763  237999999999988776

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=80.01  E-value=4.7  Score=33.67  Aligned_cols=75  Identities=13%  Similarity=0.151  Sum_probs=30.6

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|+.+.+.+  .++.+.......+++|+.+.+.+  ++..++... ...++|+.+.+.+  .+..+. ......+++|+.
T Consensus        13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~-~~~F~~~~~l~~   85 (129)
T PF13306_consen   13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIG-DNAFSNCTNLKN   85 (129)
T ss_dssp             T--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE--TTTTTT-TTECE
T ss_pred             CCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccc-cccccccccccc
Confidence            666666653  45555544334556677776654  344444321 2334566666643  333321 122334555665


Q ss_pred             ecc
Q 037562          102 MEI  104 (670)
Q Consensus       102 L~i  104 (670)
                      +.+
T Consensus        86 i~~   88 (129)
T PF13306_consen   86 IDI   88 (129)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	670
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-119
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-119
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-119
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-119
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-118
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-118
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-118
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-118
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-118
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-104
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-104
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-104
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-104
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-104
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-104
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-104
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-104
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-104
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-104
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-104
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-104
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-104
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-104
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-103
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-103
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		3e-35
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-29
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-28
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-27
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		4e-26
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		7e-24
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-23
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		6e-22

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/452 (71%), Positives = 368/452 (81%), Gaps = 4/452 (0%)
Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           LKK  E LQ+Q    ++    ++   KLE LPAM+ GV+SDDN+LQLEATT F  LLS +
Sbjct: 48  LKKRREGLQAQAPVPASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIE 105
Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
           RSPPI+EVIQSGVVPRFV+FL R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIF
Sbjct: 106 RSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165
Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATW 389
           VKLL S S DVR+Q VWALGNVAGDSP+CRDLVL+ GAL+P           SMLR ATW
Sbjct: 166 VKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 225
Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
           TL NFCRGKPQP F Q RPALP LA+LI SNDEEVLTDACWALSYLSDGTNDK+QAVIEA
Sbjct: 226 TLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285
Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
           GV PRLVELL H S SVL PALRT+ NIV GDD QTQCII+  ALP  L +L  N ++SI
Sbjct: 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSI 345
Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
           KKE  W ISNIT GN++QIQAVI++G+IGP+VNLLQ  EFD KKEAAWAISNAT  G+H+
Sbjct: 346 KKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD 405
Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
           QIK+LV EGC+KPLCDLL+C D +IVTVCLEGLENILKVG  E +   A GD N ++Q++
Sbjct: 406 QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG--ETDKTLAAGDVNVFSQMI 463
Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
           +EAEGLEKIENLQSHD+N I EKAV+ILE YW
Sbjct: 464 DEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/447 (70%), Positives = 361/447 (80%), Gaps = 7/447 (1%)
Query: 220 QRSRISTPVLSLNLQSKL-----EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPI 274
           +R  + +P L  +   K        LPAM+ GV+SDDN+LQLEATT F  LLS +RSPPI
Sbjct: 13  ERQHMDSPDLGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPI 72
Query: 275 DEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 334
           +EVIQSGVVPRFV+FL R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIFVKLL 
Sbjct: 73  EEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG 132
Query: 335 SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNF 394
           S S DVR+Q VWALGNVAGDSP+CRDLVL+ GAL+P           SMLR ATWTL NF
Sbjct: 133 SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 192
Query: 395 CRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPR 454
           CRGKPQP F Q RPALP LA+LI SNDEEVLTDACWALSYLSDGTNDK+QAVIEAGV PR
Sbjct: 193 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 252
Query: 455 LVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS 514
           LVELL H S SVL PALRT+ NIV GDD QTQCII+  ALP  L +L  N ++SIKKE  
Sbjct: 253 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEAC 312
Query: 515 WIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHL 574
           W ISNIT GN++QIQAVI++G+IGP+VNLLQ  EFD KKEAAWAISNAT  G+H+QIK+L
Sbjct: 313 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYL 372
Query: 575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEG 634
           V EGC+KPLCDLL+C D +IVTVCLEGLENILKVG  E +   A GD N ++Q+++EAEG
Sbjct: 373 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG--ETDKTLAAGDVNVFSQMIDEAEG 430
Query: 635 LEKIENLQSHDDNGISEKAVEILETYW 661
           LEKIENLQSHD+N I EKAV+ILE YW
Sbjct: 431 LEKIENLQSHDNNEIYEKAVKILEAYW 457

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  426 bits (1095), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/427 (54%), Positives = 297/427 (69%), Gaps = 11/427 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
           LP M   + SDD   QL AT  F  +LS +  PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 89  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
           Q +AAWALTNIASGTS  TKVV+D  AVP+F++LL + SV+V++Q +WALGNVAGDS   
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
           RD VL   A+ P           S++RTATWTL N CRG KPQP ++ V  ALP LA+LI
Sbjct: 208 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
            S D E L DACWA+SYLSDG  + +QAVI+  +  RLVELL H S+ V TPALR + NI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G+D QTQ +IN G LP  L +L+ + +E+IKKE  W ISNIT GN EQIQAVID+ LI
Sbjct: 327 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
            P+V LL+  E+ TKKEA WAISNA+  G      I++LV +GC+KPLCDLL  AD +I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
            V L+ LENILK+G A+     A G + N+ A  +E+A G+EKI N Q ++++ I EKA 
Sbjct: 446 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502
Query: 655 EILETYW 661
           +I+ETY+
Sbjct: 503 KIIETYF 509

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  426 bits (1094), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/428 (54%), Positives = 297/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
           LP M   + SDD   QL AT  F  +LS +  PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
           Q +AAWALTNIASGTS  TKVV+D  AVP+F++LL + SV+V++Q +WALGNVAGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
           RD VL   A+ P           S++RTATWTL N CRG KPQP ++ V  ALP LA+LI
Sbjct: 120 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
            S D E L DACWA+SYLSDG  + +QAVI+  +  RLVELL H S+ V TPALR + NI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G+D QTQ +IN G LP  L +L+ + +E+IKKE  W ISNIT GN EQIQAVID+ LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
            P+V LL+  E+ TKKEA WAISNA+  G      I++LV +GC+KPLCDLL  AD +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
            V L+ LENILK+G A+     A G + N+ A  +E+A G+EKI N Q ++++ I EKA 
Sbjct: 358 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 655 EILETYWS 662
           +I+ETY+ 
Sbjct: 415 KIIETYFG 422

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/428 (54%), Positives = 297/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
           LP M   + SDD   QL AT  F  +LS +  PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
           Q +AAWALTNIASGTS  TKVV+D  AVP+F++LL + SV+V++Q +WALGNVAGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
           RD VL   A+ P           S++RTATWTL N CRG KPQP ++ V  ALP LA+LI
Sbjct: 120 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
            S D E L DACWA+SYLSDG  + +QAVI+  +  RLVELL H S+ V TPALR + NI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G+D QTQ +IN G LP  L +L+ + +E+IKKE  W ISNIT GN EQIQAVID+ LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
            P+V LL+  E+ TKKEA WAISNA+  G      I++LV +GC+KPLCDLL  AD +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
            V L+ LENI+K+G A+     A G + N+ A  +E+A G+EKI N Q ++++ I EKA 
Sbjct: 358 EVTLDALENIIKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 655 EILETYWS 662
           +I+ETY+ 
Sbjct: 415 KIIETYFG 422

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/438 (53%), Positives = 296/438 (67%), Gaps = 13/438 (2%)
Query: 235 SKLEILPA------MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPRFV 287
           S +E+ P       M++ ++S     QL AT  F  LLS + +PPIDEVI + GVV RFV
Sbjct: 8   SNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFV 67
Query: 288 EFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWA 347
           EFL R++   LQF++AW LTNIASG S  T++VI  GAVPIF++LL+S   DV++Q VWA
Sbjct: 68  EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 127
Query: 348 LGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPP-FNQV 406
           LGN+AGDS  CRD VL    L P           +M R A W L N CRGK  PP F +V
Sbjct: 128 LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 187
Query: 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSV 466
            P L VL+ L+  +D +VL DACWALSYLSDG NDK+QAVI+AGV  RLVELL H+   V
Sbjct: 188 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV 247
Query: 467 LTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE 526
           ++PALR + NIV GDD QTQ I+NC AL   L  L+ + +ESIKKE  W ISNIT GNR 
Sbjct: 248 VSPALRAVGNIVTGDDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRA 306
Query: 527 QIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL 586
           QIQ VID+ +   ++++LQ  EF T+KEAAWAI+NAT  G+ EQIK+LV  GC+KPLCDL
Sbjct: 307 QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 366
Query: 587 LLCADPKIVTVCLEGLENILKVGVAEMN-TGTAVGDFNQYAQLVEEAEGLEKIENLQSHD 645
           L   D KIV V L GLENIL++G  E    GT +   N Y  L+EEA GL+KIE LQSH+
Sbjct: 367 LTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI---NPYCALIEEAYGLDKIEFLQSHE 423
Query: 646 DNGISEKAVEILETYWSS 663
           +  I +KA +++E Y+ +
Sbjct: 424 NQEIYQKAFDLIEHYFGT 441

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  423 bits (1088), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/427 (54%), Positives = 296/427 (69%), Gaps = 11/427 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
           LP M   + SDD   QL AT  F  +LS +  PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
           Q +AAWALTNIASGTS  TKVV+D  AVP+F++LL + SV+V++Q +WALGNVAGDS   
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
           RD VL   A+ P           S++RTATWTL N CRG KPQP ++ V  ALP LA+LI
Sbjct: 122 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
            S D E L DACWA+SYLSDG  + +QAVI+  +  RLVELL H S+ V TPALR + NI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G+D QTQ +IN G LP  L +L+ + +E+IKKE  W ISNIT GN EQIQAVID+ LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
            P+V LL+  E  TKKEA WAISNA+  G      I++LV +GC+KPLCDLL  AD +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
            V L+ LENILK+G A+     A G + N+ A  +E+A G+EKI N Q ++++ I EKA 
Sbjct: 360 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 655 EILETYW 661
           +I+ETY+
Sbjct: 417 KIIETYF 423

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  423 bits (1088), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/425 (54%), Positives = 291/425 (68%), Gaps = 7/425 (1%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPRFVEFLMRQDYPQLQFK 301
           M++ ++S     QL AT  F  LLS + +PPIDEVI + GVV RFVEFL R++   LQF+
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 302 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361
           +AW LTNIASG S  T++VI  GAVPIF++LL+S   DV++Q VWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 362 VLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPP-FNQVRPALPVLAQLIRSN 420
           VL    L P           +M R A W L N CRGK  PP F +V P L VL+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480
           D +VL DACWALSYLSDG NDK+QAVI+AGV  RLVELL H+   V++PALR + NIV G
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPI 540
           DD QTQ I+NC AL   L  L+ + +ESIKKE  W ISNIT GNR QIQ VID+ +   +
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 541 VNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE 600
           +++LQ  EF T+KEAAWAI+NAT  G+ EQIK+LV  GC+KPLCDLL   D KIV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 601 GLENILKVGVAEMN-TGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659
           GLENIL++G  E    GT +   N Y  L+EEA GL+KIE LQSH++  I +KA +++E 
Sbjct: 384 GLENILRLGEQEAKRNGTGI---NPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
Query: 660 YWSSR 664
           Y+ + 
Sbjct: 441 YFGTE 445

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/428 (54%), Positives = 296/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
           LP M   + SDD   QL AT  F  +LS +  PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
           Q +AAWALTNIASGTS  TKVV+D  AVP+F++LL + SV+V++Q +WALGNVAGDS   
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
           RD VL   A+ P           S++RTATWTL N CRG KPQP ++ V  ALP LA+LI
Sbjct: 122 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
            S D E L DACWA+SYLSDG  + +QAVI+  +  RLVELL H S+ V TPALR + NI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G+D QTQ +IN G LP  L +L+ + +E+IKKE  W ISNIT GN EQIQAVID+ LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
            P+V LL+  E  TKKEA WAISNA+  G      I++LV +GC+KPLCDLL  AD +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
            V L+ LENILK+G A+     A G + N+ A  +E+A G+EKI N Q ++++ I EKA 
Sbjct: 360 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 655 EILETYWS 662
           +I+ETY+ 
Sbjct: 417 KIIETYFG 424

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/428 (54%), Positives = 296/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
           LP M   + SDD   QL AT  F  +LS +  PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
           Q +AAWALTNIASGTS  TKVV+D  AVP+F++LL + SV+V++Q +WALGNVAGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
           RD VL   A+ P           S++RTATWTL N CRG KPQP ++ V  ALP LA+LI
Sbjct: 121 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
            S D E L DACWA+SYLSDG  + +QAVI+  +  RLVELL H S+ V TPALR + NI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G+D QTQ +IN G LP  L +L+ + +E+IKKE  W ISNIT GN EQIQAVID+ LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
            P+V LL+  E  TKKEA WAISNA+  G      I++LV +GC+KPLCDLL  AD +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
            V L+ LENILK+G A+     A G + N+ A  +E+A G+EKI N Q ++++ I EKA 
Sbjct: 359 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 655 EILETYWS 662
           +I+ETY+ 
Sbjct: 416 KIIETYFG 423

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/428 (54%), Positives = 296/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
           LP M   + SDD   QL AT  F  +LS +  PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
           Q +AAWALTNIASGTS  TKVV+D  AVP+F++LL + SV+V++Q +WALGNVAGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
           RD VL   A+ P           S++RTATWTL N CRG KPQP ++ V  ALP LA+LI
Sbjct: 121 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
            S D E L DACWA+SYLSDG  + +QAVI+  +  RLVELL H S+ V TPALR + NI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G+D QTQ +IN G LP  L +L+ + +E+IKKE  W ISNIT GN EQIQAVID+ LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
            P+V LL+  E  TKKEA WAISNA+  G      I++LV +GC+KPLCDLL  AD +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
            V L+ LENILK+G A+     A G + N+ A  +E+A G+EKI N Q ++++ I EKA 
Sbjct: 359 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 655 EILETYWS 662
           +I+ETY+ 
Sbjct: 416 KIIETYFG 423

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 366 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 658 ETYWS 662
           E Y+S
Sbjct: 419 EKYFS 423

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 371 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 658 ETYWS 662
           E Y+S
Sbjct: 424 EKYFS 428

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 370 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 658 ETYWS 662
           E Y+S
Sbjct: 423 EKYFS 427

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 371 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 658 ETYWS 662
           E Y+S
Sbjct: 424 EKYFS 428

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 377 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 658 ETYWS 662
           E Y+S
Sbjct: 430 EKYFS 434

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 421 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 658 ETYWS 662
           E Y+S
Sbjct: 474 EKYFS 478

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 421 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 658 ETYWS 662
           E Y+S
Sbjct: 474 EKYFS 478

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 421 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 658 ETYWS 662
           E Y+S
Sbjct: 474 EKYFS 478

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 407 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 658 ETYWS 662
           E Y+S
Sbjct: 460 EKYFS 464

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 366 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 658 ETYW 661
           E Y+
Sbjct: 419 EKYF 422

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 38  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 98  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 397 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 658 ETYW 661
           E Y+
Sbjct: 450 EKYF 453

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 370 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 658 ETYW 661
           E Y+
Sbjct: 423 EKYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 371 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 658 ETYW 661
           E Y+
Sbjct: 424 EKYF 427

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 405 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 658 ETYW 661
           E Y+
Sbjct: 458 EKYF 461

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S +   QL+AT     LLS ++ PPID +I++G++P+FV FL R D   +QF++
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           S+    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             +D EVL D CWA+SYL+DG N+++  V++ GV P+LV+LLG S   ++TPALR I NI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V++L   +F T+KEA WA++N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ+H++  + + ++ ++
Sbjct: 372 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 658 ETYWS 662
           E Y+S
Sbjct: 425 EKYFS 429

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/425 (44%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
           +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +QF++
Sbjct: 81  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AG     RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
           +  GA+ P           ++    LR  TWTL N CR K P PP + V   LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
             ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I NI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
           V G D QTQ +I+ GAL  F  +L  N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +V +L   +F T+K AAWAI+N T  GT EQI +LV  G ++PL +LL   D KI+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
            L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++ ++
Sbjct: 440 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 658 ETYWS 662
           E Y+S
Sbjct: 493 EKYFS 497

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/254 (37%), Positives = 138/254 (54%), Gaps = 17/254 (6%)
Query: 410 LPVLAQLIRSNDEEVLTDACWALSY-LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
           LP + Q + S+D +    A    S  LSDG N+++QAVI+AG  P LV+LL   +  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
            AL  + NI  G + Q Q +I+ GALP  + +L   +E+ I +E  W +SNI  G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588
           QAVID+G +  +V LL +      +EA WA+SN    G +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190
Query: 589 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNG 648
             + +I+   L  L NI   G             N+  Q V+EA  LEK+E LQSH++  
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 649 ISEKAVEILETYWS 662
           I ++A E LE   S
Sbjct: 238 IQKEAQEALEKLQS 251

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 109/197 (55%), Gaps = 4/197 (2%)
Query: 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP 469
           LP + Q + S D++ L  A   LS ++ G N+++QAVI+AG  P LV+LL   +  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 470 ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ 529
           AL  + NI  G + Q Q +I+ GALP  + +L   +E+ I +E  W +SNI  G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 530 AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC 589
           AVID+G +  +V LL +      +EA WA+SN    G  +  K  V+E   +P  + L  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 590 A-DPKIVTVCLEGLENI 605
           + + KI     E LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 109/197 (55%), Gaps = 4/197 (2%)
Query: 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP 469
           LP + Q + S D++ L  A   LS ++ G N+++QAVI+AG  P LV+LL   +  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 470 ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ 529
           AL  + NI  G + Q Q +I+ GALP  + +L   +E+ I +E  W +SNI  G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 530 AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE-GCVKPLCDLLL 588
           AVID+G +  +V LL +      +EA WA+SN    G  +  K  V+E G ++ L  L  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQLQS 190
Query: 589 CADPKIVTVCLEGLENI 605
             + KI     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 110/210 (52%), Gaps = 15/210 (7%)
Query: 453 PRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKE 512
           P++V+ L       L  ALR +  I  G + Q Q +I+ GALP  + +L   +E+ I +E
Sbjct: 15  PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQE 73
Query: 513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK 572
             W +SNI  G  EQIQAVID+G +  +V LL +      +EA WA+SN    G +EQI+
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQIQ 132
Query: 573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632
            ++  G +  L  LL   + +I+   L  L NI   G             N+  Q V+EA
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKEA 179
Query: 633 EGLEKIENLQSHDDNGISEKAVEILETYWS 662
             LEK+E LQSH++  I ++A E LE   S
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 108/198 (54%), Gaps = 6/198 (3%)
Query: 410 LPVLAQLIRSNDEEVLTDACWALSY-LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
           LP + Q + S+D +    A    S  LSDG N+++QAVI+AG  P LV+LL   +  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
            AL  + NI  G + Q Q +I+ GALP  + +L   +E+ I +E  W +SNI  G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE-GCVKPLCDLL 587
           QAVID+G +  +V LL +      +EA WA+SN    G  +  K  V+E G ++ L  L 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQLQ 189
Query: 588 LCADPKIVTVCLEGLENI 605
              + KI     E LE +
Sbjct: 190 SHENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 15/210 (7%)
Query: 453 PRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKE 512
           P++ + L          A R    I+   + Q Q +I+ GALP  + +L   +E+ I +E
Sbjct: 15  PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQE 73
Query: 513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK 572
             W +SNI  G  EQIQAVID+G +  +V LL +      +EA WA+SN    G +EQI+
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQ 132
Query: 573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632
            ++  G +  L  LL   + +I+   L  L NI   G             N+  Q V+EA
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKEA 179
Query: 633 EGLEKIENLQSHDDNGISEKAVEILETYWS 662
             LEK+E LQSH++  I ++A E LE   S
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 5/227 (2%)
Query: 385 RTATWTLFNFCRGKPQPPFNQVRPA--LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK 442
           + A   L     G P      +  A  + VL +L+ S D EV  +A  AL+ ++ G ++ 
Sbjct: 20  KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 443 VQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV 502
           ++A+++AG    LV+LL  + S V   A R + NI  G D   + I++ G +   + +L 
Sbjct: 79  IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 503 HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA 562
               E ++KE +  ++NI  G  E I+A++D+G +  +V LL +T+ + +KEAA A++N 
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN- 196
Query: 563 TKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG 609
              G    IK +V  G V+ L  LL   D ++       LENI   G
Sbjct: 197 IASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 125/250 (50%), Gaps = 15/250 (6%)
Query: 413 LAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALR 472
           L +L+ S D E   +A   L+ ++ G    ++A+++AG    LV+LL  + S V   A R
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI 532
            + NI  G D   + I++ G +   + +L     E ++KE +  ++NI  G  E I+A++
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIV 125
Query: 533 DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP 592
           D+G +  +V LL +T+ + +KEAA A++N    G  E IK +V  G V+ L  LL   D 
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALAN-IASGPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 593 KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK 652
           ++       L NI            A G  +    +V +A G+E ++ L +  D+ + ++
Sbjct: 185 EVQKEAARALANI------------ASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKE 231
Query: 653 AVEILETYWS 662
           A   LE   S
Sbjct: 232 AQRALENIKS 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	670
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-172
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-49
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-46
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-167
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-164
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-56
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-40
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-103
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-67
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-64
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-59
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-51
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-24
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-101
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-75
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-71
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-62
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-57
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-52
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-31
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-86
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-85
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-11
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-77
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-62
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-52
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-13
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-73
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-70
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-58
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-36
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-64
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-36
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-54
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-26
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-16
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-53
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-50
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-49
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-31
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-52
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-20
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-15
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-38
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-34
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-35
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-19
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-31
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-21
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-18
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	8e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-10
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-10
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	6e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	5e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-04
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	8e-07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	5e-06

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  499 bits (1285), Expect = e-172
 Identities = 234/427 (54%), Positives = 292/427 (68%), Gaps = 5/427 (1%)

Query: 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPRFVEFLMRQDYPQ 297
           I   M++ ++S     QL AT  F  LLS + +PPIDEVI + GVV RFVEFL R++   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357
           LQF++AW LTNIASG S  T++VI  GAVPIF++LL+S   DV++Q VWALGN+AGDS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQL 416
           CRD VL    L PLL   ++   L+M R A W L N CRGK P P F +V P L VL+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 417 IRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476
           +  +D +VL DACWALSYLSDG NDK+QAVI+AGV  RLVELL H+   V++PALR + N
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGL 536
           IV GDD QTQ I+NC AL   L +L     ESIKKE  W ISNIT GNR QIQ VID+ +
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 537 IGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVT 596
              ++++LQ  EF T+KEAAWAI+NAT  G+ EQIK+LV  GC+KPLCDLL   D KIV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 597 VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEI 656
           V L GLENIL++G  E          N Y  L+EEA GL+KIE LQSH++  I +KA ++
Sbjct: 380 VALNGLENILRLG--EQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437

Query: 657 LETYWSS 663
           +E Y+ +
Sbjct: 438 IEHYFGT 444

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  177 bits (450), Expect = 5e-49
 Identities = 60/354 (16%), Positives = 134/354 (37%), Gaps = 19/354 (5%)

Query: 308 NIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA--GDSPRCRDLVLSQ 365
                   N ++          ++++ S S + +         +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 366 GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRP-ALPVLAQLIRSNDEEV 424
           G +   +  L    N ++   + W L N   G        ++  A+P+  +L+ S  E+V
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 425 LTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS-SVLTPALRTIRNIVKGDDF 483
              A WAL  ++  +      V++  + P L++L    +  ++   A+  + N+ +G   
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183

Query: 484 QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNL 543
             +       L     +L  +  + +  +  W +S ++ G  ++IQAVID+G+   +V L
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242

Query: 544 LQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE 603
           L + ++     A  A+ N    G   Q + ++    ++ L  LL      I       + 
Sbjct: 243 LMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

Query: 604 NILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
           NI              G+  Q  Q V +A     + ++    +    ++A   +
Sbjct: 302 NI------------TAGNRAQ-IQTVIDANIFPALISILQTAEFRTRKEAAWAI 342

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  168 bits (427), Expect = 6e-46
 Identities = 64/314 (20%), Positives = 134/314 (42%), Gaps = 19/314 (6%)

Query: 349 GNVAGDSPRCRDLVLSQ-GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR 407
           G +     +  ++ ++  G +   + E+  + +     +AT         +P PP ++V 
Sbjct: 1   GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60

Query: 408 PALPVLAQLI----RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS 463
               V+A+ +    R  +  +  ++ W L+ ++ G + + + VI+AG  P  +ELL    
Sbjct: 61  STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120

Query: 464 SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG 523
             V   A+  + NI          +++C  LP  L +    +  ++ +   W +SN+  G
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180

Query: 524 NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPL 583
                +    S  +  +  LL  ++ D   +A WA+S  +  G +++I+ ++  G  + L
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD-GPNDKIQAVIDAGVCRRL 239

Query: 584 CDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS 643
            +LL+  D K+V+  L  + NI              GD  Q  Q++     L+ + +L S
Sbjct: 240 VELLMHNDYKVVSPALRAVGNI------------VTGDDIQ-TQVILNCSALQSLLHLLS 286

Query: 644 HDDNGISEKAVEIL 657
                I ++A   +
Sbjct: 287 SPKESIKKEACWTI 300

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  487 bits (1255), Expect = e-167
 Identities = 231/429 (53%), Positives = 292/429 (68%), Gaps = 7/429 (1%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ 297
           + LP M   + SDD   QL AT  F  +LS +  PPID VIQ+GVVPR VEF+       
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357
           LQ +AAWALTNIASGTS  TKVV+D  AVP+F++LL + SV+V++Q +WALGNVAGDS  
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206

Query: 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQL 416
            RD VL   A+ P+L   N N   S++RTATWTL N CRGK PQP ++ V  ALP LA+L
Sbjct: 207 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 265

Query: 417 IRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476
           I S D E L DACWA+SYLSDG  + +QAVI+  +  RLVELL H S+ V TPALR + N
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325

Query: 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGL 536
           IV G+D QTQ +IN G LP    +L     E+IKKE  W ISNIT GN EQIQAVID+ L
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANL 384

Query: 537 IGPIVNLLQNTEFDTKKEAAWAISNATKFGTH--EQIKHLVREGCVKPLCDLLLCADPKI 594
           I P+V LL+  E+ TKKEA WAISNA+  G    + I++LV +GC+KPLCDLL  AD +I
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444

Query: 595 VTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
           + V L+ LENILK+G  E +      + N+ A  +E+A G+EKI N Q ++++ I EKA 
Sbjct: 445 IEVTLDALENILKMG--EADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502

Query: 655 EILETYWSS 663
           +I+ETY+  
Sbjct: 503 KIIETYFGE 511

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  479 bits (1235), Expect = e-164
 Identities = 195/438 (44%), Positives = 281/438 (64%), Gaps = 13/438 (2%)

Query: 230 SLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEF 289
             N  +    +  +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV F
Sbjct: 49  GSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF 108

Query: 290 LMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALG 349
           L + D   +QF++AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALG
Sbjct: 109 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 168

Query: 350 NVAGDSPRCRDLVLSQGALIPLLAELN----ENANLSMLRTATWTLFNFCRGK-PQPPFN 404
           N+AGD    RDLV+  GA+ PLLA L            LR  TWTL N CR K P PP +
Sbjct: 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228

Query: 405 QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS 464
            V   LP L +L+  ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +  
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 288

Query: 465 SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGN 524
            ++TPALR I NIV G D QTQ +I+ GAL  F  +L +    +I+KE +W +SNIT G 
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWTMSNITAGR 347

Query: 525 REQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLC 584
           ++QIQ V++ GL+  +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL 
Sbjct: 348 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407

Query: 585 DLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH 644
           +LL   D KI+ V L+ + NI +           +G+  + + ++EE  GL+KIE LQ H
Sbjct: 408 NLLSAKDTKIIQVILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRH 460

Query: 645 DDNGISEKAVEILETYWS 662
           ++  + + ++ ++E Y+S
Sbjct: 461 ENESVYKASLNLIEKYFS 478

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  197 bits (503), Expect = 5e-56
 Identities = 97/417 (23%), Positives = 156/417 (37%), Gaps = 26/417 (6%)

Query: 251 DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIA 310
           +            +          ++   +  V   V+  +  +  + Q +A  A   + 
Sbjct: 27  ERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVK-GINSNNLESQLQATQAARKLL 85

Query: 311 S-GTSENTKVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGAL 368
           S         +I  G +P FV  L  +    ++ ++ WAL N+A  +      V+  GA 
Sbjct: 86  SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA- 144

Query: 369 IPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRP--ALPVLAQLIRSNDEE--- 423
           IP    L  + +  +   A W L N          + V    A+  L  L+   D     
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPDLSTLA 203

Query: 424 --VLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD 481
              L +  W LS L    N          + P LV LL H+   VL  +   I  +  G 
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263

Query: 482 DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIV 541
           + + + ++  G +P  + +L    E  I       I NI  G  EQ Q VID+G +    
Sbjct: 264 NERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322

Query: 542 NLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEG 601
           +LL N + + +KEA W +SN T  G  +QI+ +V  G V  L  +L  AD K        
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381

Query: 602 LENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILE 658
           + N            T+ G   Q   LV     +E + NL S  D  I +  ++ + 
Sbjct: 382 ITNY-----------TSGGTVEQIVYLV-HCGIIEPLMNLLSAKDTKIIQVILDAIS 426

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  154 bits (391), Expect = 1e-40
 Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 11/260 (4%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ 297
           +ILP +V  +  +D  +  ++      L +   +  I+ V++ GVVP+ V+ L   +   
Sbjct: 232 QILPTLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVKLLGATE-LP 289

Query: 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357
           +   A  A+ NI +GT E T+ VID GA+ +F  LL +P  +++K+  W + N+      
Sbjct: 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 349

Query: 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR--PALPVLAQ 415
               V++ G L+P L  +   A+    + A W + N+  G        +     +  L  
Sbjct: 350 QIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408

Query: 416 LIRSNDEEVLTDACWALSYL------SDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP 469
           L+ + D +++     A+S +         T      + E G   ++  L  H + SV   
Sbjct: 409 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKA 468

Query: 470 ALRTIRNIVKGDDFQTQCII 489
           +L  I      ++ + Q ++
Sbjct: 469 SLNLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 98.6 bits (245), Expect = 7e-22
 Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 9/220 (4%)

Query: 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQL 298
           ++P +V  + + +  +   A     N+++        +VI +G +  F   L+      +
Sbjct: 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPS-LLTNPKTNI 332

Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
           Q +A W ++NI +G  +  + V++HG VP  V +L+      +K+  WA+ N        
Sbjct: 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392

Query: 359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR-GKPQPPFNQVRP------ALP 411
           + + L    +I  L  L    +  +++     + N  +  +      ++         L 
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452

Query: 412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGV 451
            +  L R  +E V   +   +        ++ Q V+    
Sbjct: 453 KIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  327 bits (840), Expect = e-103
 Identities = 73/439 (16%), Positives = 140/439 (31%), Gaps = 18/439 (4%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ 297
           +++ A+V  + + ++      T   ++ LS  R      + +SG +P  V+ L       
Sbjct: 56  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPV-DS 113

Query: 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357
           + F A   L N+          V   G +   V LL   +V     T   L  +A  +  
Sbjct: 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173

Query: 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI 417
            + ++L+ G    L+  +       +L T +  L          P       +  L   +
Sbjct: 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 233

Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
               + ++ +  W L  LSD    +       G+   LV+LLG    +V+T A   + N+
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHE-ESIKKEVSWIISNITCGNRE---QIQAVID 533
              +      +   G +   +  ++   + E I +     + ++T  ++E      AV  
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 534 SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK 593
              +  +V LL         +A   +              L  +G +  L  LL+ A   
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQD 409

Query: 594 IVTVCLEGLENILKVGVAEMNT--GTAVGDFNQYA------QLVEEAEGLEKIENLQSHD 645
                  G      V    M        G  +  A       ++     +     L    
Sbjct: 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 469

Query: 646 DNGISEKAVEILETYWSSR 664
              I   A  +L      +
Sbjct: 470 IENIQRVAAGVLCELAQDK 488

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  232 bits (594), Expect = 1e-67
 Identities = 77/424 (18%), Positives = 140/424 (33%), Gaps = 27/424 (6%)

Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
           +P +   +  +D  +  +A  +   L   + S     +    +V   V  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359
              A  L N+ S   E    +   G +P  VK+L SP   V    +  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRP-ALPVLAQLIR 418
             V   G  +  +  L    N+  L   T  L     G  +     +       L  ++R
Sbjct: 134 MAVRLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 419 S-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
           +   E++L      L  LS  +++K  A++EAG    L   L   S  ++   L T+RN+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
               D  T+     G L   + +L  +    +    + I+SN+TC N +    V   G I
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 538 GPIVNLLQ--NTEFDTKKEAAWAISNATKFGTH--EQIKHLVREGCVKPLCDLLLCADPK 593
             +V  +       D  + A  A+ + T            +     +  +  LL      
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 594 IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA 653
            +     GL   L           A+   N     + E   + ++  L          + 
Sbjct: 368 PLIKATVGLIRNL-----------ALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRT 414

Query: 654 VEIL 657
               
Sbjct: 415 SMGG 418

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  222 bits (568), Expect = 5e-64
 Identities = 65/386 (16%), Positives = 136/386 (35%), Gaps = 24/386 (6%)

Query: 274 IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 333
            D  + +  +P   + L  +D   +  KAA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 334 ASPS-VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLF 392
            + + V+  + T   L N++         +   G  IP L ++  +   S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGG-IPALVKMLGSPVDSVLFYAITTLH 123

Query: 393 NFCRGKPQPPFNQVRP-ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGV 451
           N    +            L  +  L+   + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 452 YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKK 511
              LV ++   +   L      +  ++         I+  G +      L    +  + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR-LVQ 242

Query: 512 EVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQI 571
              W + N++    +Q       GL+G +V LL + + +    AA  +SN T    ++  
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNK 298

Query: 572 KHLVREGCVKPLCDLLLCADPK--IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQ-L 628
             + + G ++ L   +L A  +  I    +  L ++           T+     + AQ  
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL-----------TSRHQEAEMAQNA 347

Query: 629 VEEAEGLEKIENLQSHDDNGISEKAV 654
           V    GL  +  L     +    KA 
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  208 bits (530), Expect = 9e-59
 Identities = 56/345 (16%), Positives = 116/345 (33%), Gaps = 20/345 (5%)

Query: 315 ENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE 374
                 +   A+P   KLL      V  +    +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 375 LNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSY 434
           +    ++   R    TL N    +           +P L +++ S  + VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 435 LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGAL 494
           L         AV  AG   ++V LL  ++   L      ++ +  G+      I+  G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 495 PYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKE 554
              ++++     E +    S ++  +         A++++G +  +   L +      + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 555 AAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMN 614
             W + N +        K    EG +  L  LL   D  +VT     L N+         
Sbjct: 244 CLWTLRNLSD----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL--------- 290

Query: 615 TGTAVGDFNQYAQLVEEAEGLEKIENL--QSHDDNGISEKAVEIL 657
                 +  +   +V +  G+E +     ++ D   I+E A+  L
Sbjct: 291 ---TCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  185 bits (472), Expect = 9e-51
 Identities = 61/365 (16%), Positives = 122/365 (33%), Gaps = 33/365 (9%)

Query: 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQL 298
              A+V+ + +      L  T+  + +LS   S     ++++G +      L      +L
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPS-QRL 240

Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
                W L N++      TK     G +   V+LL S  ++V       L N+  ++ + 
Sbjct: 241 VQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297

Query: 359 RDLVLSQGALIPLLAEL-NENANLSMLRTATWTLFNFCRGKPQPPFNQVRP----ALPVL 413
           + +V   G +  L+  +        +   A   L +      +    Q        LPV+
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357

Query: 414 AQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT 473
            +L+       L  A   L             + E G  PRLV+LL  +           
Sbjct: 358 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 417

Query: 474 IRNIVKGDDFQT---------------------QCIINCGALPYFLDMLVHNHEESIKKE 512
                  +  +                        I     +P F+ +L ++  E+I++ 
Sbjct: 418 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRV 476

Query: 513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK 572
            + ++  +   ++E  +A+   G   P+  LL +        AA  +   ++    +  K
Sbjct: 477 AAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 535

Query: 573 HLVRE 577
            L  E
Sbjct: 536 RLSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  146 bits (370), Expect = 3e-37
 Identities = 62/365 (16%), Positives = 118/365 (32%), Gaps = 40/365 (10%)

Query: 210 LKKLGEFLQSQRSRISTPVLSL---------NLQSKLEILPAMVDGVWSDDNSLQLEATT 260
           ++ LG  L     R+    L             +    +L  +V  + SDD ++   A  
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 285

Query: 261 LFINLLSFDRSPPIDEVIQSGVVPRFVEFL-MRQDYPQLQFKAAWALTNIASGTSENTKV 319
           +  NL + +       V Q G +   V  +    D   +   A  AL ++ S   E    
Sbjct: 286 ILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 344

Query: 320 ---VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN 376
              V  H  +P+ VKLL  PS     +    L       P     +  QGA IP L +L 
Sbjct: 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA-IPRLVQLL 403

Query: 377 ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436
             A+    R  +                           +     EE++     AL  L+
Sbjct: 404 VRAHQDTQRRTSM-------------------GGTQQQFVEGVRMEEIVEGCTGALHILA 444

Query: 437 DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPY 496
              +++   +      P  V+LL     ++   A   +  + +  +   + I   GA   
Sbjct: 445 RDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAP 502

Query: 497 FLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA 556
             ++L H+  E +    + ++  ++    +  +  +   L     +L +       + A 
Sbjct: 503 LTELL-HSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVEL---TSSLFRTEPMAWNETAD 558

Query: 557 WAISN 561
             +  
Sbjct: 559 LGLDI 563

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  111 bits (278), Expect = 1e-25
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLD 499
           N +  A +     P L +LL      V+  A   +  + K +  +   + +   +   + 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 500 MLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAI 559
            + + ++    +  +  + N+   +RE + A+  SG I  +V +L +        A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 560 SNATKFGTHEQIKHLVRE-GCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTA 618
            N       E  K  VR  G ++ +  LL   + K + +  + L+ +            A
Sbjct: 123 HNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL------------A 168

Query: 619 VGDFNQYAQLVEEAEGLEK-IENLQSHDDNGISEKAVEIL 657
            G+  +   ++  + G +  +  ++++    +      +L
Sbjct: 169 YGN-QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  107 bits (268), Expect = 2e-24
 Identities = 42/274 (15%), Positives = 78/274 (28%), Gaps = 29/274 (10%)

Query: 249 SDDNSLQLEATTLFINLLSFDRSPP--IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWAL 306
            D   +   A     +L S  +      + V     +P  V+ L    +  L  KA   L
Sbjct: 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI-KATVGL 376

Query: 307 TNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQG 366
               +    N   + + GA+P  V+LL     D +++T                      
Sbjct: 377 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ---------------- 420

Query: 367 ALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLT 426
                   +       ++   T  L    R        +    +P+  QL+ S  E +  
Sbjct: 421 -----QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 475

Query: 427 DACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ 486
            A   L  L+       +A+   G    L ELL   +  V T A   +  + +      +
Sbjct: 476 VAAGVLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 534

Query: 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNI 520
             ++          L      +  +     +   
Sbjct: 535 KRLSVELTS----SLFRTEPMAWNETADLGLDIG 564

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 74.6 bits (183), Expect = 5e-14
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 8/150 (5%)

Query: 254 LQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT 313
           +    T     L     +     +     +P FV+ L+      +Q  AA  L  +A   
Sbjct: 432 IVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-D 487

Query: 314 SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLL- 372
            E  + +   GA     +LL S +  V       L  ++ D P+     LS      L  
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 547

Query: 373 ---AELNENANLSMLRTATWTLFNFCRGKP 399
                 NE A+L +   A      + +  P
Sbjct: 548 TEPMAWNETADLGLDIGAQGEPLGYRQDDP 577

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  317 bits (815), Expect = e-101
 Identities = 72/431 (16%), Positives = 138/431 (32%), Gaps = 18/431 (4%)

Query: 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQL 298
           ++ A+V  + + ++      T   ++ LS  R   +  + +SG +P  V+ L       +
Sbjct: 60  MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGSPV-DSV 117

Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
            F A   L N+          V   G +   V LL   +V     T   L  +A  +   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR 418
           + ++L+ G    L+  +       +L T +  L          P       +  L   + 
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237

Query: 419 SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIV 478
              + ++ +  W L  LSD    +       G+   LV+LLG    +V+T A   + N+ 
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 479 KGDDFQTQCIINCGALPYFLDMLVHNHE-ESIKKEVSWIISNITCGNRE---QIQAVIDS 534
             +      +   G +   +  ++   + E I +     + ++T  ++E      AV   
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354

Query: 535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKI 594
             +  +V LL         +A   +              L  +G +  L  LL+ A    
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 595 VTVCLEGLENILKVGVAEM-----NTGTAVGDF---NQYAQLVEEAEGLEKIENLQSHDD 646
                 G      V    M         A+           ++     +     L     
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 473

Query: 647 NGISEKAVEIL 657
             I   A  +L
Sbjct: 474 ENIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  251 bits (642), Expect = 1e-75
 Identities = 80/420 (19%), Positives = 144/420 (34%), Gaps = 27/420 (6%)

Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
           +P +   +  +D  +  +A  +   L   + S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359
              A  L N+ S   E    +   G +P  VK+L SP   V    +  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRP-ALPVLAQLIR 418
             V   G L  ++A LN+  N+  L   T  L     G  +     +       L  ++R
Sbjct: 137 MAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 419 S-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
           +   E++L      L  LS  +++K  A++EAG    L   L   S  ++   L T+RN+
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
               D  T+     G L   + +L  +    +    + I+SN+TC N +    V   G I
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGGI 310

Query: 538 GPIVNLLQ--NTEFDTKKEAAWAISNATKFGTH--EQIKHLVREGCVKPLCDLLLCADPK 593
             +V  +       D  + A  A+ + T            +     +  +  LL      
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370

Query: 594 IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA 653
            +     GL   L           A+   N     + E   + ++  L          + 
Sbjct: 371 PLIKATVGLIRNL-----------ALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRT 417

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  238 bits (608), Expect = 9e-71
 Identities = 73/459 (15%), Positives = 145/459 (31%), Gaps = 50/459 (10%)

Query: 229 LSLNLQSKLEI-----LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV 283
           LS + +  L I     +PA+V  + S  +S+   A T   NLL          V  +G +
Sbjct: 87  LSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGL 145

Query: 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQ 343
            + V  L+ +   +        L  +A G  E+  +++  G     V ++ + + +    
Sbjct: 146 QKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204

Query: 344 TVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPF 403
           T   +  V       +  ++  G  +  L     + +  +++   WTL N      +   
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE- 262

Query: 404 NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS 463
             +   L  L QL+ S+D  V+T A   LS L+         V + G    LV  +  + 
Sbjct: 263 -GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321

Query: 464 SS--VLTPALRTIRNIVKGDDF---QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS 518
               +  PA+  +R++             +     LP  +  L+H        + +  + 
Sbjct: 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP-VVVKLLHPPSHWPLIKATVGLI 380

Query: 519 NITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG------------ 566
                       + + G I  +V LL     DT++  +   +                  
Sbjct: 381 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 440

Query: 567 --------THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTA 618
                          +     +     LL      I  V    L  + +           
Sbjct: 441 GALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD---------- 490

Query: 619 VGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
                + A+ +E       +  L    + G++  A  +L
Sbjct: 491 ----KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  216 bits (552), Expect = 1e-62
 Identities = 58/355 (16%), Positives = 121/355 (34%), Gaps = 23/355 (6%)

Query: 305 ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLS 364
           A+ N+ +         +   A+P   KLL      V  +    +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 365 QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEV 424
              +  ++  +    ++   R    TL N    +           +P L +++ S  + V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 425 LTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ 484
           L  A   L  L         AV  AG   ++V LL  ++   L      ++ +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 485 TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL 544
              I+  G     ++++     E +    S ++  +         A++++G +  +   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 545 QNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLEN 604
            +      +   W + N     +    K    EG +  L  LL   D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 605 ILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENL--QSHDDNGISEKAVEIL 657
           +               +  +   +V +  G+E +     ++ D   I+E A+  L
Sbjct: 293 L------------TCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  202 bits (515), Expect = 2e-57
 Identities = 67/401 (16%), Positives = 146/401 (36%), Gaps = 31/401 (7%)

Query: 264 NLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH 323
           NL+++      D  + +  +P   + L  +D   +  KAA  +  ++   +    ++   
Sbjct: 4   NLINYQD----DAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 324 GAVPIFVKLLASPS-VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLS 382
             V   V+ + + + V+  + T   L N++         +   G  IP L ++  +   S
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGG-IPALVKMLGSPVDS 116

Query: 383 MLRTATWTLFNFCRGKPQPPFNQVRP-ALPVLAQLIRSNDEEVLTDACWALSYLSDGTND 441
           +L  A  TL N    +            L  +  L+   + + L      L  L+ G  +
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 442 KVQAVIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM 500
               ++ +G    LV ++  ++   +L    R ++ +          I+  G +      
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLH 235

Query: 501 LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS 560
           L    +  + +   W + N++    +Q       GL+G +V LL + + +    AA  +S
Sbjct: 236 LTDPSQR-LVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILS 291

Query: 561 NATKFGTHEQIKHLVREGCVKPLCDLLLCADP--KIVTVCLEGLENILKVGVAEMNTGTA 618
           N T    ++    + + G ++ L   +L A     I    +  L ++           T+
Sbjct: 292 NLTC-NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL-----------TS 339

Query: 619 VGDFNQYAQL-VEEAEGLEK-IENLQSHDDNGISEKAVEIL 657
                + AQ  V    GL   ++ L       + +  V ++
Sbjct: 340 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 380

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  186 bits (474), Expect = 8e-52
 Identities = 61/372 (16%), Positives = 118/372 (31%), Gaps = 34/372 (9%)

Query: 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQL 298
              A+V+ + +      L  T+  + +LS   S     ++++G +      L      +L
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRL 243

Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
                W L N++      TK     G +   V+LL S  ++V       L N+  ++ + 
Sbjct: 244 VQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 359 RDLVLSQGALIPLLAEL-NENANLSMLRTATWTLFNFCRGKPQPPFNQVR----PALPVL 413
           + +V   G +  L+  +        +   A   L +      +    Q        LPV+
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360

Query: 414 AQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT 473
            +L+       L  A   L             + E G  PRLV+LL  +           
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420

Query: 474 IRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID 533
                  +  +                      E I +  +  +  +   +      +  
Sbjct: 421 GTQQQFVEGVRM---------------------EEIVEGCTGALHIL-ARDVHNRIVIRG 458

Query: 534 SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK 593
              I   V LL +   + ++ AA  +    +    E  + +  EG   PL +LL   +  
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEG 516

Query: 594 IVTVCLEGLENI 605
           + T     L  +
Sbjct: 517 VATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  126 bits (317), Expect = 8e-31
 Identities = 59/325 (18%), Positives = 109/325 (33%), Gaps = 37/325 (11%)

Query: 210 LKKLGEFLQSQRSRISTPV------LSLNLQSKLEI---LPAMVDGVWSDDNSLQLEATT 260
           ++ LG  L     R+          LS     +  +   L  +V  + SDD ++   A  
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 261 LFINLLSFDRSPPIDEVIQSGVVPRFVEFL-MRQDYPQLQFKAAWALTNIASGTSENTKV 319
           +  NL + +       V Q G +   V  +    D   +   A  AL ++ S   E    
Sbjct: 289 ILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 347

Query: 320 ---VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN 376
              V  H  +P+ VKLL  PS     +    L       P     +  QGA IP L +L 
Sbjct: 348 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA-IPRLVQLL 406

Query: 377 ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436
             A+    R  +                           +     EE++     AL  L+
Sbjct: 407 VRAHQDTQRRTSM-------------------GGTQQQFVEGVRMEEIVEGCTGALHILA 447

Query: 437 DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPY 496
              ++++  +      P  V+LL     ++   A   +  + +  +   + I   GA   
Sbjct: 448 RDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAP 505

Query: 497 FLDMLVHNHEESIKKEVSWIISNIT 521
             ++L   +E  +    + ++  ++
Sbjct: 506 LTELLHSRNEG-VATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  270 bits (692), Expect = 2e-86
 Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 15/250 (6%)

Query: 409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
            LP + Q + S+D +    A    S +    N+++QAVI+AG  P LV+LL   +  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
            AL  + NI  G + Q Q +I+ GALP  + +L   +E+ I +E  W +SNI  G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588
           QAVID+G +  +V LL +      +EA WA+SN    G +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190

Query: 589 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNG 648
             + +I+   L  L NI   G             N+  Q V+EA  LEK+E LQSH++  
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237

Query: 649 ISEKAVEILE 658
           I ++A E LE
Sbjct: 238 IQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  266 bits (682), Expect = 6e-85
 Identities = 87/243 (35%), Positives = 131/243 (53%), Gaps = 4/243 (1%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ 297
             LP M   + SDD   QL AT  F  +LS D +  I  VI +G +P  V+ L   +  Q
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQ 69

Query: 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357
           +  +A WAL+NIASG +E  + VID GA+P  V+LL+SP+  + ++ +WAL N+A     
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR-PALPVLAQL 416
               V+  GA +P L +L  + N  +L+ A W L N   G  +     +   ALP L QL
Sbjct: 130 QIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188

Query: 417 IRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476
           + S +E++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +   A   +  
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

Query: 477 IVK 479
           +  
Sbjct: 249 LQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 525 REQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLC 584
           R           +  +   L + +   +  A    S       +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALV 60

Query: 585 DLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH 644
            LL   + +I+   L  L NI            A G   Q  Q V +A  L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 645 DDNGISEKAVEIL 657
            +  I ++A+  L
Sbjct: 108 PNEQILQEALWAL 120

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  243 bits (623), Expect = 7e-77
 Identities = 73/197 (37%), Positives = 109/197 (55%), Gaps = 2/197 (1%)

Query: 409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
            LP + Q + S D++ L  A   LS ++ G N+++QAVI+AG  P LV+LL   +  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
            AL  + NI  G + Q Q +I+ GALP  + +L   +E+ I +E  W +SNI  G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588
           QAVID+G +  +V LL +      +EA WA+SN    G +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQS 190

Query: 589 CADPKIVTVCLEGLENI 605
             + KI     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  204 bits (521), Expect = 6e-62
 Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 15/219 (6%)

Query: 444 QAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH 503
                    P++V+ L       L  ALR +  I  G + Q Q +I+ GALP  + +L  
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 504 NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNAT 563
            + E I +E  W +SNI  G  EQIQAVID+G +  +V LL +      +EA WA+SN  
Sbjct: 66  PN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 564 KFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFN 623
             G +EQI+ ++  G +  L  LL   + +I+   L  L NI   G             N
Sbjct: 125 S-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------N 170

Query: 624 QYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWS 662
           +  Q V+EA  LEK+E LQSH++  I ++A E LE   S
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  178 bits (454), Expect = 3e-52
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 275 DEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 334
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VID GA+P  V+LL+
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 335 SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394
           SP+  + ++ +WAL N+A         V+  GA +P L +L  + N  +L+ A W L N 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNI 123

Query: 395 CRGKPQPPFNQVRP-ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYP 453
             G  +     +   ALP L QL+ S +E++L +A WALS ++ G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 454 RLVELLGHSSSSVLTPALRTIRNIVK 479
           +L +L  H +  +   A   +  +  
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 525 REQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLC 584
           R           +  +V  L + +    + A   +S     G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALV 60

Query: 585 DLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH 644
            LL   + +I+   L  L NI            A G   Q  Q V +A  L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 645 DDNGISEKAV 654
            +  I ++A+
Sbjct: 108 PNEQILQEAL 117

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  249 bits (637), Expect = 8e-73
 Identities = 69/453 (15%), Positives = 130/453 (28%), Gaps = 65/453 (14%)

Query: 229 LSLNLQSKLEI-----LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV 283
           LS + +  L I     +PA+V+ + S  +S+                             
Sbjct: 220 LSHHREGLLAIFKSGGIPALVNMLGSPVDSV----------------------------- 250

Query: 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQ 343
                           F A   L N+          V   G +   V LL   +V     
Sbjct: 251 ---------------LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 295

Query: 344 TVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPF 403
           T   L  +A  +   + ++L+ G    L+  +       +L T +  L          P 
Sbjct: 296 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 355

Query: 404 NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS 463
                 +  L   +    + ++ +  W L  LSD    +       G+   LV+LLG   
Sbjct: 356 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDD 412

Query: 464 SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHE-ESIKKEVSWIISNITC 522
            +V+T A   + N+   +      +   G +   +  ++   + E I +     + ++T 
Sbjct: 413 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472

Query: 523 GNRE---QIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC 579
            +++      AV     +  +V LL         +A   +              L  +G 
Sbjct: 473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGA 531

Query: 580 VKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNT--GTAVGDFN------QYAQLVEE 631
           +  L  LL+ A          G      V    M        G  +          ++  
Sbjct: 532 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG 591

Query: 632 AEGLEKIENLQSHDDNGISEKAVEILETYWSSR 664
              +     L       I   A  +L      +
Sbjct: 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 624

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  243 bits (620), Expect = 2e-70
 Identities = 65/422 (15%), Positives = 134/422 (31%), Gaps = 27/422 (6%)

Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYP-QL 298
                +     D   Q   T          R+    E +  G+     +F        Q 
Sbjct: 69  FNQSFNQEQVADIDGQYAMTRA-----QRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQR 123

Query: 299 QFKAAWALTNIASG-TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357
             + +  L +      +      +   A+P   KLL      V  +    +  ++     
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 183

Query: 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI 417
              ++ S   +  ++  +    ++   R  + TL N    +           +P L  ++
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243

Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
            S  + VL  A   L  L         AV  AG   ++V LL  ++   L      ++ +
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303

Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
             G+      I+  G     ++++     E +    S ++  +         A++++G +
Sbjct: 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGM 362

Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
             +   L +      +   W + N     +    K    EG +  L  LL   D  +VT 
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTC 418

Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENL--QSHDDNGISEKAVE 655
               L N+               +  +   +V +  G+E +     ++ D   I+E A+ 
Sbjct: 419 AAGILSNL------------TCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465

Query: 656 IL 657
            L
Sbjct: 466 AL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  210 bits (535), Expect = 1e-58
 Identities = 66/435 (15%), Positives = 136/435 (31%), Gaps = 34/435 (7%)

Query: 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQL 298
              A+V+ + +      L  T+  + +LS   S     ++++G +      L      +L
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRL 376

Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
                W L N++      TK     G +   V+LL S  ++V       L N+  ++ + 
Sbjct: 377 VQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433

Query: 359 RDLVLSQGALIPLLAEL-NENANLSMLRTATWTLFNFCRGKPQPPFNQVR----PALPVL 413
           + +V   G +  L+  +        +   A   L +           Q        LPV+
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493

Query: 414 AQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT 473
            +L+       L  A   L             + E G  PRLV+LL  +           
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553

Query: 474 IRNIVKGDDFQT---------------------QCIINCGALPYFLDMLVHNHEESIKKE 512
                  +  +                        I     +P F+ +L ++  E+I++ 
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIENIQRV 612

Query: 513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK 572
            + ++  +   ++E  +A+   G   P+  LL +        AA  +   ++    +  K
Sbjct: 613 AAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE-DKPQDYK 670

Query: 573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632
             +       L         +   + L+       +G  + +          Y Q     
Sbjct: 671 KRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGM 730

Query: 633 EGLEKIENLQSHDDN 647
           + + + E    H   
Sbjct: 731 DPMMEHEMAGHHPGP 745

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  145 bits (368), Expect = 1e-36
 Identities = 64/373 (17%), Positives = 121/373 (32%), Gaps = 37/373 (9%)

Query: 210 LKKLGEFLQSQRSRISTPVLS--LNLQSKLE-------ILPAMVDGVWSDDNSLQLEATT 260
           ++ LG  L     R+    L    NL            +L  +V  + SDD ++   A  
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 421

Query: 261 LFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIASGTSENTKV 319
           +  NL + +       V Q G +   V  ++R  D   +   A  AL ++ S   +    
Sbjct: 422 ILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMA 480

Query: 320 ---VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN 376
              V  H  +P+ VKLL  PS     +    L       P     +  QGA IP L +L 
Sbjct: 481 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA-IPRLVQLL 539

Query: 377 ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436
             A+    R  +                           +     EE++     AL  L+
Sbjct: 540 VRAHQDTQRRTSM-------------------GGTQQQFVEGVRMEEIVEACTGALHILA 580

Query: 437 DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPY 496
              +++   +      P  V+LL     ++   A   +  + +  +   + I   GA   
Sbjct: 581 RDIHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE-AAEAIEAEGATAP 638

Query: 497 FLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA 556
             ++L   +E  +    + ++  ++    +  +  +   L   +      T  +T     
Sbjct: 639 LTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697

Query: 557 WAISNATKFGTHE 569
              +     G  +
Sbjct: 698 DIGAQGEPLGYRQ 710

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  216 bits (552), Expect = 1e-64
 Identities = 54/332 (16%), Positives = 103/332 (31%), Gaps = 34/332 (10%)

Query: 255 QLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS 314
           Q+ A             P +D+              M          A   L  + S   
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63

Query: 315 ENTKVVIDHGAVPIFVKLLASP-----------SVDVRKQTVWALGNVAGDSPRCRDLVL 363
           E+   + + G +    +LL              S+ +R+    AL N+       +  + 
Sbjct: 64  EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR--PALPVLAQLIR-SN 420
           S    +  L    ++ +  + +     L N            +R   ++  L +      
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 421 DEEVLTDACWALSYLS-DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP-------ALR 472
            E  L     AL  LS   T +K       G    LV  L + S +            LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI 532
            + +++  ++   Q +     L   L  L  +H  +I       + N++  N +  +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 533 DSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564
           D G +  + NL+ +        +A A+ N   
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  138 bits (348), Expect = 5e-36
 Identities = 49/276 (17%), Positives = 98/276 (35%), Gaps = 17/276 (6%)

Query: 233 LQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR 292
           LQ   E+     D       +L+  A     NL   D +         G +   V   ++
Sbjct: 82  LQVDCEMYGLTND---HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA-QLK 137

Query: 293 QDYPQLQFKAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLASPS-VDVRKQTVWALGN 350
            +   LQ   A  L N++     N+K  + + G+V   ++           K  + AL N
Sbjct: 138 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197

Query: 351 VAGDSPR-CRDLVLSQGA---LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV 406
           ++        D+    GA   L+  L   ++   L+++ +    L N          ++ 
Sbjct: 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257

Query: 407 R----PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS 462
                  L  L Q ++S+   ++++AC  L  LS       +A+ + G    L  L+   
Sbjct: 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 317

Query: 463 SSSVLTPALRTIRNIVKGDDFQTQ---CIINCGALP 495
              +   +   +RN++     + +    +    +LP
Sbjct: 318 HKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 83.7 bits (207), Expect = 2e-17
 Identities = 31/221 (14%), Positives = 73/221 (33%), Gaps = 27/221 (12%)

Query: 448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE 507
                 +    +       + PA+  +  +   ++     +   G L    ++L  + E 
Sbjct: 30  HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEM 88

Query: 508 ----------SIKKEVSWIISNITCGNREQIQAVI-DSGLIGPIVNLLQNTEFDTKKEAA 556
                     ++++     ++N+T G+      +    G +  +V  L++   D ++  A
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

Query: 557 WAISNATKFGTHEQIKHLVRE-GCVKPLCDLLL-CADPKIVTVCLEGLENILKVGVAEMN 614
             + N + +      K  +RE G VK L +  L       +   L  L N+         
Sbjct: 149 SVLRNLS-WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL--------- 198

Query: 615 TGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVE 655
             +A    N+ A +      L  +    ++     +   +E
Sbjct: 199 --SAHCTENK-ADICAVDGALAFLVGTLTYRSQTNTLAIIE 236

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  192 bits (488), Expect = 2e-54
 Identities = 70/450 (15%), Positives = 131/450 (29%), Gaps = 70/450 (15%)

Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
           +P+ V++L  QD  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP 402
               AL N+   S   +     Q  +   ++ L    N  + +  T  L+N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 403 FNQVRPALPVLAQLI----------------RSNDEEVLTDACWALSYLSDGTNDKVQAV 446
              +  ALPVLA  +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 447 IEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHE 506
             +G+   L+  + +  ++           +    +   +           L+    N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 507 ESIKKEVSWIISNITCGNREQIQA-------------VIDSGLIGPIVNLLQNTEFDTKK 553
                   +   +    N                   +  S  I   +NL+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 554 EAAWA-----ISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI--- 605
           EA         ++     +       ++E  +  +  LL   +  +V      L N+   
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 606 --LKVGVAEMNTGTAVG----------------------------DFNQYAQLVEEAEGL 635
             L   +                                         Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 636 EKIENL-QSHDDNGISEKAVEILETYWSSR 664
             I NL +S      +E A  +L   WSS+
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSK 451

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  110 bits (275), Expect = 7e-26
 Identities = 47/351 (13%), Positives = 100/351 (28%), Gaps = 40/351 (11%)

Query: 249 SDDNSLQLEATTLFINLLSFDRS---------PPIDEVI---QSGVVPRFVEFLMRQDYP 296
           + +  +Q + T L  NL S D           P + + +    SG              P
Sbjct: 98  TGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157

Query: 297 QLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP 356
           ++ F A   L N++S  +    +    G +   +  + +     R         +     
Sbjct: 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN 217

Query: 357 RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG---------------KPQP 401
               L          L     NA      T  ++  +                   K   
Sbjct: 218 LSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277

Query: 402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK-----VQAVIEAGVYPRLV 456
                      L  + +S  +  L     AL  L+               ++    P++ 
Sbjct: 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIA 337

Query: 457 ELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV-----HNHEESIKK 511
            LL   +S V+      + N+ +        ++     P    +L       ++ E I  
Sbjct: 338 RLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395

Query: 512 EVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFD-TKKEAAWAISN 561
              + + N+     +  +    S ++  I+NL +++      + A   +S+
Sbjct: 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 86.0 bits (212), Expect = 6e-18
 Identities = 37/250 (14%), Positives = 89/250 (35%), Gaps = 29/250 (11%)

Query: 408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVL 467
             +P   Q + S DE+      + + +         Q V + G   +LV+LL   + +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 468 TPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQ 527
             A   +RN+V               +   + +L       I+K+++ ++ N++  +  +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--E 119

Query: 528 IQAVIDSGLIGPIVNLL----------------QNTEFDTKKEAAWAISNATKFGTHEQI 571
           ++  + +  +  + + +                +  + +    A   + N +   + +  
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS---SADAG 176

Query: 572 KHLVRE--GCVKPLCDLLLCA------DPKIVTVCLEGLENILKVGVAEMNTGTAVGDFN 623
           +  +R   G +  L   +         D K V  C+  L N+     AE+ T     ++N
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236

Query: 624 QYAQLVEEAE 633
                 E++ 
Sbjct: 237 ARNAYTEKSS 246

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 80.6 bits (198), Expect = 3e-16
 Identities = 35/310 (11%), Positives = 84/310 (27%), Gaps = 26/310 (8%)

Query: 366 GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR----PALPVLAQLIRSND 421
           G  IP   +   + +        + + + C         + +      +  L  L+RS +
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES---AKQQVYQLGGICKLVDLLRSPN 57

Query: 422 EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKG 480
           + V   A  AL  L   +                V LL  + ++ +       + N+   
Sbjct: 58  QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117

Query: 481 DDFQTQCIINCGALPYFLDMLV---------------HNHEESIKKEVSWIISNITCGNR 525
           D+ + +  +   ALP   D ++                  +  +    +  + N++  + 
Sbjct: 118 DELKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA 175

Query: 526 EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCD 585
            +      SGLI  ++  +QN    ++ +     +                    + L  
Sbjct: 176 GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235

Query: 586 LLLCADPKI-VTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH 644
               A  +   T C     + +     +        +      L         +  +   
Sbjct: 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS 295

Query: 645 DDNGISEKAV 654
             +   E   
Sbjct: 296 KKDATLEACA 305

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  189 bits (482), Expect = 2e-53
 Identities = 53/294 (18%), Positives = 98/294 (33%), Gaps = 26/294 (8%)

Query: 291 MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSVD 339
           M          A   L  + S   E+   + + G +    +LL              S+ 
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 340 VRKQTVWALGNVA-GDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398
           +R+    AL N+  GD      L   +G  +  L    ++ +  + +     L N     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGC-MRALVAQLKSESEDLQQVIASVLRNLSWRA 274

Query: 399 PQPPFNQVR--PALPVLAQLIR-SNDEEVLTDACWALSYLS-DGTNDKVQAVIEAGVYPR 454
                  +R   ++  L +       E  L     AL  LS   T +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 455 LVELLGHSSSSVLTP-------ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE 507
           LV  L + S +            LR + +++  ++   Q +     L   L  L  +H  
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSL 393

Query: 508 SIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN 561
           +I       + N++  N +  +A+ D G +  + NL+ +        +A A+ N
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  181 bits (461), Expect = 1e-50
 Identities = 69/441 (15%), Positives = 155/441 (35%), Gaps = 65/441 (14%)

Query: 222 SRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG 281
            R S   L+ +L +K+E++ +++  + + D   + + +   + + S   S     + QSG
Sbjct: 16  PRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMSRTLLAMSSSQDS--CISMRQSG 70

Query: 282 VVPRFVEFLMRQD-----------YPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV 330
            +P  ++ L   D             + + +A+ AL NI     ++ +   +   + +  
Sbjct: 71  CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLE 130

Query: 331 KL------------------------LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQG 366
           ++                        + +P        V  L  ++ D    R  +   G
Sbjct: 131 QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELG 189

Query: 367 ALIPLLAEL-----------NENANLSMLRTATWTLFNFCRGKP--QPPFNQVRPALPVL 413
             +  +AEL           N++ ++++ R A   L N   G    +     ++  +  L
Sbjct: 190 G-LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 248

Query: 414 AQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI-EAGVYPRLVELLGHSSS-SVLTPAL 471
              ++S  E++       L  LS   +   +  + E G    L+E        S L   L
Sbjct: 249 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308

Query: 472 RTIRNI-VKGDDFQTQCIINCGALPYFLDMLVHNHE---ESIKKEVSWIISNITC---GN 524
             + N+     + +       GAL + +  L +  +    +I +    I+ N++     N
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368

Query: 525 REQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLC 584
            +  Q + ++  +  ++  L++        A   + N +     +  + L   G V  L 
Sbjct: 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-ARNPKDQEALWDMGAVSMLK 427

Query: 585 DLLLCADPKIVTVCLEGLENI 605
           +L+      I       L N+
Sbjct: 428 NLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  177 bits (449), Expect = 7e-49
 Identities = 51/322 (15%), Positives = 109/322 (33%), Gaps = 24/322 (7%)

Query: 229 LSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVE 288
                ++    +    + + +        A  + + L   +       + + G +    E
Sbjct: 139 CWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAE 196

Query: 289 FL----------MRQDYPQLQFKAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLASPS 337
            L                 L+  A  ALTN+  G   N   +    G +   V  L S S
Sbjct: 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256

Query: 338 VDVRKQTVWALGNVAGD-SPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396
            D+++     L N++       +  +   G++  L+    E    S L++    L+N   
Sbjct: 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316

Query: 397 GKP--QPPFNQVRPALPVLAQLI----RSNDEEVLTDACWALSYLSD---GTNDKVQAVI 447
                +     V  AL  L   +    ++N   ++      L  +S       D  Q + 
Sbjct: 317 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 376

Query: 448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE 507
           E      L++ L   S ++++ A  T+ N+   +    + + + GA+   L  L+H+  +
Sbjct: 377 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM-LKNLIHSKHK 435

Query: 508 SIKKEVSWIISNITCGNREQIQ 529
            I    +  + N+      + +
Sbjct: 436 MIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  125 bits (314), Expect = 9e-31
 Identities = 56/382 (14%), Positives = 118/382 (30%), Gaps = 53/382 (13%)

Query: 302 AAWALTNIASGTSENTKVVIDHGAVPIFVKLL------------ASPSVDVRKQTVWALG 349
            +  L  + S + ++   +   G +P+ ++LL            +  S + R +   AL 
Sbjct: 49  MSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107

Query: 350 NVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPA 409
           N+    P  +        L  L             + A                    P 
Sbjct: 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA------------------HEPG 149

Query: 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL---------- 459
           +      + +  E  +  A   L  LS     +  A+ E G    + ELL          
Sbjct: 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMYGLT 208

Query: 460 -GHSSSSVLTPALRTIRNIVKGDDFQTQCII-NCGALPYFLDMLVHNHEESIKKEVSWII 517
             H S ++   A   + N+  GD      +    G +   +  L    E+ +++ ++ ++
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED-LQQVIASVL 267

Query: 518 SNITCGNREQIQAVI-DSGLIGPIVNLLQNTEFD-TKKEAAWAISNATKFGTHEQIKHLV 575
            N++       +  + + G +  ++      + + T K    A+ N +   T  +     
Sbjct: 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 327

Query: 576 REGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGL 635
            +G +  L   L           +E    IL+      N  + +     + Q++ E   L
Sbjct: 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILR------NVSSLIATNEDHRQILRENNCL 381

Query: 636 EKIENLQSHDDNGISEKAVEIL 657
           + +          I   A   L
Sbjct: 382 QTLLQHLKSHSLTIVSNACGTL 403

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  188 bits (478), Expect = 5e-52
 Identities = 75/464 (16%), Positives = 153/464 (32%), Gaps = 79/464 (17%)

Query: 264 NLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH 323
           +L S  +  P     +   +P  +  L  +    ++  AA  L ++     +    V   
Sbjct: 31  SLDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKL 89

Query: 324 GAVPIFVKLLASPSVDVRKQTVWALGNVA-GDSPRCRDLVLSQGALIPLLAELNENANLS 382
             +P+ V LL  P  +V      AL N++ G     +  + +   +  L+  L +  ++ 
Sbjct: 90  KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMD 149

Query: 383 MLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI------------------RSNDEEV 424
           +    T TL+N            V  AL  L   +                      E V
Sbjct: 150 LTEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208

Query: 425 LTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ 484
           LT+    L  +S   ++  + + E      LV+ L           +  ++  +   D  
Sbjct: 209 LTNTAGCLRNVSSERSEARRKLREC---DGLVDAL-----------IFIVQAEIGQKDSD 254

Query: 485 TQCIINCGALPYFLDMLVHN---HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIV 541
           ++ + NC  L   L   VH      E  ++    + +N         + +    ++   +
Sbjct: 255 SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYI 314

Query: 542 NLLQNTEFDTKKE-AAWAISNATK--FGTHEQIKHLVR-EGCVKPLCDLLLCADPKIVTV 597
           +LL+ ++     E +A AI N     +     I+  +R E  +  + DLL     ++V  
Sbjct: 315 SLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKA 374

Query: 598 CLEGLENI---------------------LKVGVAEMNTGTA--------------VGDF 622
               L N+                     L  G    +   +              + + 
Sbjct: 375 ASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN 434

Query: 623 NQYAQLVEEAEGLEKIENLQSHDDNG--ISEKAVEILETYWSSR 664
            + A+ + E +G+EK+  +    +        A  +L+T W  +
Sbjct: 435 LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 95.0 bits (235), Expect = 1e-20
 Identities = 54/314 (17%), Positives = 105/314 (33%), Gaps = 39/314 (12%)

Query: 381 LSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN 440
               R +  +L +  +G P PP N  +P LP +  ++    + V ++A   L +L    +
Sbjct: 22  AQHERGSLASLDSLRKGGP-PPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80

Query: 441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQC-IINCGALPYFLD 499
                V +    P LV LL H    V   A   ++NI  G D   +  I NC  +P  + 
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 500 MLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL--------------- 544
           +L    +  + + ++  + N+   +      ++D  L      ++               
Sbjct: 141 LLRKARDMDLTEVITGTLWNL-SSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCK 199

Query: 545 --QNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA------DPKIVT 596
                        A  + N +   +  + K    +G V  L  ++         D K+V 
Sbjct: 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVE 259

Query: 597 VCLEGLENILKVGVAEMNTGTAVGDFNQYA------------QLVEEAEGLEK-IENLQS 643
            C+  L N+      E+       +                 +L+ + E +   I  L+ 
Sbjct: 260 NCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319

Query: 644 HDDNGISEKAVEIL 657
                I E +   +
Sbjct: 320 SKTPAILEASAGAI 333

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 78.5 bits (192), Expect = 3e-15
 Identities = 34/239 (14%), Positives = 67/239 (28%), Gaps = 41/239 (17%)

Query: 232 NLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLM 291
           N    L  L   V          Q  A  +  N  +       + + Q  VV  ++  L 
Sbjct: 260 NCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPA-RGYELLFQPEVVRIYISLLK 318

Query: 292 RQDYPQLQFKAAWALTNIASGT----SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWA 347
               P +   +A A+ N+ +G           +    A+     LL +    V K    A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378

Query: 348 LGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR 407
           L N+A D+      ++ + A+  L+  L                                
Sbjct: 379 LRNLAVDARNKE--LIGKHAIPNLVKNLPGG----------------------------- 407

Query: 408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSV 466
                      +  E+ +      ++ +     +  + + E     +LV +    + S 
Sbjct: 408 -----QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  150 bits (379), Expect = 4e-38
 Identities = 59/448 (13%), Positives = 134/448 (29%), Gaps = 62/448 (13%)

Query: 253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG 312
           S    A+     +                 +  +++  +     + + +   A+T + +G
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 313 TSE-NTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPL 371
             +   +VV   G + + + +  +     ++     L   +         +  QG  + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VDI 334

Query: 372 LAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRP--ALPVLAQLIR------SNDEE 423
           L  L  + N  +   A   L        Q    +     A   LA+  R        D++
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 424 VLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF 483
           +   A   L+YL+     K + + +      L++L    + S L   + T  N+    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 484 QT--------------------------------QCIINCGALPYFLDMLVHNHEESIKK 511
           Q                                   + N G       +       + ++
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQE 513

Query: 512 EVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN-ATKFGTHEQ 570
            ++ +++ + CG +E    V+  G +  ++ +        K+ A  A++           
Sbjct: 514 LIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572

Query: 571 IKHLVREGCVKPLCDLLLC-ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
                    ++PL +LL            L  L N+                     Q +
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL-------------ASMNESVRQRI 619

Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEIL 657
            + +G+ KIE     D   ++  A + L
Sbjct: 620 IKEQGVSKIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  138 bits (349), Expect = 2e-34
 Identities = 65/488 (13%), Positives = 133/488 (27%), Gaps = 102/488 (20%)

Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
           L KLG +     +    P          E     +     D +  +  A  L    L+ D
Sbjct: 354 LCKLGSYGGQDAA--IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA--YLTLD 409

Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT---------------- 313
                  +     +   ++ L R       +       N+ +                  
Sbjct: 410 AECKEKLIEDKASIHALMD-LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFA 468

Query: 314 ----------------SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357
                           ++   V+ + G       L  + S + ++     L  V G    
Sbjct: 469 KQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KE 527

Query: 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-PQPPFNQVRP--ALPVLA 414
            R  V+ +G  +  L  +         R AT  L        P+  F+  R    +  L 
Sbjct: 528 LRGKVVQEGG-VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL 586

Query: 415 QLIRSNDEEVLT-DACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT 473
            L++ +   +   ++  AL+ L+       Q +I+     ++   L      +   A + 
Sbjct: 587 NLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC 646

Query: 474 IRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID 533
           + N+V  +D       N   +                                       
Sbjct: 647 LCNLVMSEDVIKMFEGNNDRVK-------------------------------------- 668

Query: 534 SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK 593
                 +  L ++ + +T    A A++  T        K L     +  L  L+    P 
Sbjct: 669 -----FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA 723

Query: 594 IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNG---IS 650
           +    +  + N++  G              + A+ + E + +E +  L    D+      
Sbjct: 724 VQHRGIVIILNMINAG-------------EEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770

Query: 651 EKAVEILE 658
           E A + L 
Sbjct: 771 EVATQCLA 778

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  133 bits (336), Expect = 1e-35
 Identities = 38/218 (17%), Positives = 69/218 (31%), Gaps = 25/218 (11%)

Query: 283 VPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVR 341
           + R V  L      P     AA  + +     SE  K V     +   ++LL   + DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 342 KQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP 401
           +    AL N+  +    +  V     +  LL  L +  +L   +  T  L+N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 402 PFNQVRPALPVLAQLI----------------RSNDEEVLTDACWALSYLSDGTNDKVQA 445
               +  AL  L + I                   D ++  +    L  +S    D  +A
Sbjct: 130 NL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 446 VIEA-GVYPRLVELLGHSSSSVLT------PALRTIRN 476
           +    G+   LV  +  + +            +  + N
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 86.5 bits (214), Expect = 3e-19
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 28/225 (12%)

Query: 405 QVRPALPVLAQLIRSND--EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS 462
            +   L     ++ ++      ++ A   + +     ++  + V +     +L++LL   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 463 SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522
           +  V       +RN+V  D+     +     +P  L +L    +   KK+++ ++ N++ 
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 523 GNREQIQAVIDSGLIGPIVNLLQN---------------TEFDTKKEAAWAISNATKFGT 567
            + +    +I   L+    N++                  +FD        + N +  G 
Sbjct: 125 ND-KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG- 182

Query: 568 HEQIKHLVRE--GCVKPLCDLL------LCADPKIVTVCLEGLEN 604
               +  +R   G +  L   +         D K    C+  L N
Sbjct: 183 -ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 58.8 bits (142), Expect = 7e-10
 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 19/152 (12%)

Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
           +  ++  +   +  +Q        NL  F+ +    EV +   VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALRNL-VFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP----------------SVDVRKQ 343
            +    L N++S   +  K ++   A+    + +  P                  D+   
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

Query: 344 TVWALGNVAGDSPRCRDLVLSQGALIPLLAEL 375
               L N++      R  +     LI  L   
Sbjct: 171 VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHY 202

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  124 bits (312), Expect = 1e-31
 Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 19/263 (7%)

Query: 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSV 466
           +P  P   +  ++ D++    A   L+ L +  ++       +G++  +   L   ++ +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 467 LTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE 526
              A + I    +      + ++  GAL   L +L  +  ++++ +  + IS +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 527 QIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL 586
            +   +       ++  +Q      K ++A+ + N    G  E    L   G V+ L  L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVAL 217

Query: 587 LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGL-----EKIENL 641
           +           L  L +++                    +  E   GL      + + L
Sbjct: 218 VRTEHSPFHEHVLGALCSLVT------------DFPQGVRECREPELGLEELLRHRCQLL 265

Query: 642 QSHDDNG-ISEKAVEILETYWSS 663
           Q H++     E   ++L+T +SS
Sbjct: 266 QQHEEYQEELEFCEKLLQTCFSS 288

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 94.3 bits (234), Expect = 2e-21
 Identities = 25/193 (12%), Positives = 64/193 (33%), Gaps = 2/193 (1%)

Query: 232 NLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLM 291
               +L  +  +V        +         I   S + +   ++V+  G + + +  L 
Sbjct: 75  ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134

Query: 292 RQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNV 351
           R     ++ KA +A++ +           +      + ++ +      ++ ++ + L N+
Sbjct: 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 194

Query: 352 AGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALP 411
               P  +  + S G  +  L  L    +          L +     PQ    + R    
Sbjct: 195 LVGHPEHKGTLCSMGM-VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ-GVRECREPEL 252

Query: 412 VLAQLIRSNDEEV 424
            L +L+R   + +
Sbjct: 253 GLEELLRHRCQLL 265

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 85.1 bits (210), Expect = 1e-18
 Identities = 43/241 (17%), Positives = 90/241 (37%), Gaps = 27/241 (11%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ 297
            +L  +++ +  D  ++   A ++   ++   ++    ++ +  ++ +    L + +   
Sbjct: 32  SVLKKLIELLDDDLWTVVKNAISI---IMVIAKTRE--DLYEP-MLKKLFSLLKKSEAIP 85

Query: 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357
           L  + A A   +A    E  K +I     P+            +    +AL  +A  +P 
Sbjct: 86  LTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI 417
               ++     + +L+  N    L+ L        NF     +  F  V P LP +  L+
Sbjct: 141 LMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKYVNPFLPRIINLL 190

Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
              DE V   A  AL +L+   +   + VI      + +E L  +SS V       I  +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244

Query: 478 V 478
           +
Sbjct: 245 L 245

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 65.2 bits (159), Expect = 9e-12
 Identities = 38/287 (13%), Positives = 77/287 (26%), Gaps = 58/287 (20%)

Query: 290 LMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALG 349
           L+       +  +A  L                  AV + ++  +  +   R    + LG
Sbjct: 31  LLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILG 79

Query: 350 NVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPA 409
            +     +C D V +      L      + +  +  TA  +    C+  P          
Sbjct: 80  QI-KICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKI 129

Query: 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP 469
           +             V     +A+S ++D               P L+ LL   +  V   
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNW 178

Query: 470 ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ 529
           A   I      +               F++ML  +  E ++ E    +S     ++  + 
Sbjct: 179 AAFAININKYDNS---------DIRDCFVEML-QDKNEEVRIEAIIGLSYR--KDKRVLS 226

Query: 530 AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR 576
            + D          L+        +   A     + G    +  L  
Sbjct: 227 VLCD---------ELKKN--TVYDDIIEAAG---ELGDKTLLPVLDT 259

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 42/358 (11%), Positives = 85/358 (23%), Gaps = 88/358 (24%)

Query: 301 KAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360
           KA+                           +LL   +   R  +   L    G       
Sbjct: 9   KASKEYGLYNQCKKL---------NDDELFRLLDDHNSLKRISSARVLQLRGGQ------ 53

Query: 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN 420
                   + L  E   + N        + L        +   + V   L      +   
Sbjct: 54  ------DAVRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNIL--NNMALNDK 103

Query: 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480
              V   A  + +            ++E              S++V       I  I   
Sbjct: 104 SACVRATAIESTAQRCKKNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAISVI--N 156

Query: 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPI 540
           D            +P  +++L  +    ++   ++ I+     N +     ++       
Sbjct: 157 DK---------ATIPLLINLL-KDPNGDVRNWAAFAININKYDNSDIRDCFVE------- 199

Query: 541 VNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE 600
             +LQ+   + + EA   +S          +  L                   +    +E
Sbjct: 200 --MLQDKNEEVRIEAIIGLS---YRKDKRVLSVLCD-----------ELKKNTVYDDIIE 243

Query: 601 GLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILE 658
               +              GD             L+ +  L   DDN I   A++ L+
Sbjct: 244 AAGEL--------------GD-------KTLLPVLDTM--LYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 46/195 (23%)

Query: 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVR 341
           +V +       +    ++   A+A++ I            D   +P+ + LL  P+ DVR
Sbjct: 129 IVEQSQITAFDKS-TNVRRATAFAISVIN-----------DKATIPLLINLLKDPNGDVR 176

Query: 342 KQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP 401
               +A+     D+   RD        + +L    ++ N  +   A   L        + 
Sbjct: 177 NWAAFAININKYDNSDIRD------CFVEML----QDKNEEVRIEAIIGL-----SYRKD 221

Query: 402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH 461
                   L VL   ++     V  D   A   L D             + P L  +L  
Sbjct: 222 K-----RVLSVLCDELK--KNTVYDDIIEAAGELGD-----------KTLLPVLDTMLYK 263

Query: 462 SSSS-VLTPALRTIR 475
              + ++T A+  ++
Sbjct: 264 FDDNEIITSAIDKLK 278

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 59/252 (23%)

Query: 322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANL 381
           D   V +++K L   S  VR+   +ALG +  +              +  L +  ++ + 
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDEDA 64

Query: 382 SMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND 441
            + R A   L     G+          A+  L + ++  D  V   A  AL  + D    
Sbjct: 65  WVRRAAADAL-----GQIGDE-----RAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDML 501
             +  +E      L++ L      V   A   +  I  GD+          A+   +  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 502 VHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN 561
                  +++  +  +  I               +   +  L +      +K A   +  
Sbjct: 153 KDEDGW-VRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE- 199

Query: 562 ATKFGTHEQIKH 573
                +     H
Sbjct: 200 --THKSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 40/245 (16%), Positives = 74/245 (30%), Gaps = 57/245 (23%)

Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
           V  +++ L       ++  AA+AL  I            D  AV   +K L      VR+
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP 402
               ALG +  +              +  L +  ++ +  + ++A   L     G  +  
Sbjct: 69  AAADALGQIGDE------------RAVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 112

Query: 403 FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS 462
                 A+  L + ++  D  V   A +AL  + D      +AV        L++ L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 463 SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522
              V   A   +  I  G +               ++ L        +K     +     
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAA-MEKLAETGTGFARKVAVNYLETHKS 203

Query: 523 GNREQ 527
            N   
Sbjct: 204 FNHHH 208

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 39/259 (15%), Positives = 78/259 (30%), Gaps = 67/259 (25%)

Query: 301 KAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360
           + +    +             D   V +++K L   S  VR+   +ALG +  +      
Sbjct: 2   RGSHHHHHHT-----------DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------ 44

Query: 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN 420
                   +  L +  ++ +  + R A   L     G+          A+  L + ++  
Sbjct: 45  ------RAVEPLIKALKDEDAWVRRAAADAL-----GQIGDE-----RAVEPLIKALKDE 88

Query: 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480
           D  V   A  AL  + D      +  +E      L++ L      V   A   +  I  G
Sbjct: 89  DGWVRQSAAVALGQIGD------ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--G 135

Query: 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPI 540
           D+          A+   +  L       +++  +  +  I  G      A+         
Sbjct: 136 DE---------RAVEPLIKALKDEDGW-VRQSAADALGEI--GGERVRAAMEK------- 176

Query: 541 VNLLQNTEFDTKKEAAWAI 559
             L +      +K A   +
Sbjct: 177 --LAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 45/195 (23%)

Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
           V  +++ L + D   ++  AA+AL  I            D  AV   +K L      VR+
Sbjct: 16  VEMYIKNL-QDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP 402
               ALG +  +              +  L +  ++ +  + ++A   L     G  +  
Sbjct: 64  AAADALGQIGDE------------RAVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 107

Query: 403 FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS 462
                 A+  L + ++  D  V   A +AL  + D      +AV        L++ L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 150

Query: 463 SSSVLTPALRTIRNI 477
              V   A   +  I
Sbjct: 151 DGWVRQSAADALGEI 165

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 34/156 (21%)

Query: 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVR 341
            V   ++ L  +D   ++  AA AL  I            D  AV   +K L      VR
Sbjct: 77  AVEPLIKALKDED-GWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVR 124

Query: 342 KQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP 401
               +ALG +  +              +  L +  ++ +  + ++A   L     G+   
Sbjct: 125 IAAAFALGEIGDE------------RAVEPLIKALKDEDGWVRQSAADAL-----GEIGG 167

Query: 402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD 437
                      + +L  +        A   L     
Sbjct: 168 E-----RVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 36/237 (15%), Positives = 75/237 (31%), Gaps = 56/237 (23%)

Query: 369 IPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDA 428
           + +  +  ++ +  + R A + L     GK          A+  L + ++  D  V   A
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYAL-----GKIGDE-----RAVEPLIKALKDEDAWVRRAA 65

Query: 429 CWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCI 488
             AL  + D      +  +E      L++ L      V   A   +  I  GD+      
Sbjct: 66  ADALGQIGD------ERAVEP-----LIKALKDEDGWVRQSAAVALGQI--GDE------ 106

Query: 489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTE 548
               A+   +  L       ++   ++ +  I  G+   ++ +I           L++ +
Sbjct: 107 ---RAVEPLIKALKDEDWF-VRIAAAFALGEI--GDERAVEPLIK---------ALKDED 151

Query: 549 FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605
              ++ AA A+          +I     E     +  L          V +  LE  
Sbjct: 152 GWVRQSAADAL---------GEIGG---ERVRAAMEKLAETGTGFARKVAVNYLETH 196

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 62.5 bits (151), Expect = 3e-10
 Identities = 45/332 (13%), Positives = 97/332 (29%), Gaps = 40/332 (12%)

Query: 313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGA---LI 369
              N K ++    +    + + + S + ++Q V  + N+          +  QGA   ++
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIIL 504

Query: 370 PLLAELNENANLSMLRTATWTLFNFCRG-KPQPPFNQVRP--ALPVLAQLIRSNDEEVLT 426
             LA   +             L        P   F +     A+P L +L+  +      
Sbjct: 505 EYLANKQDIGEPIR-ILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDN 563

Query: 427 --------------DACWALSYLSDGTNDKVQAVI-----EAGVYPRLVELLGHSSSSVL 467
                         +A  AL+ L+       + V          +  +  L+   +  + 
Sbjct: 564 PLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623

Query: 468 TPALRTIRNIVKGDDFQTQCIINCGALPYF--LDMLV---HNHEESIKKEVSWIISNITC 522
              L  I N++           N          ++LV      +   ++ V+ I +NI  
Sbjct: 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683

Query: 523 GNREQIQAVIDS-GLIGPIVNLL--QNTEFDTKKEAAWAISN----ATKFGTHEQIKHLV 575
                 + ++    LI   + +   Q  + + ++                GT+E    L 
Sbjct: 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQ 743

Query: 576 REGCVKPLCDLLLCADPKIVTVCLEGLENILK 607
               +K   ++ L             +  IL 
Sbjct: 744 ENQKLKDALNMSL-KRGDSGPEFSAAIPVILA 774

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 11/187 (5%)

Query: 218 QSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEV 277
           +   +  + P L   L     +    +        +   EA     NL S + S   +  
Sbjct: 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC 598

Query: 278 IQSGVVPRF---VEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHG------AVPI 328
                   +   +E LM  +   LQ      ++N+ S          +           I
Sbjct: 599 KHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI 658

Query: 329 FVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL--NENANLSMLRT 386
            VKLL    V+ ++       N+A   P     +L++  LI    ++  ++  ++ + + 
Sbjct: 659 LVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQR 718

Query: 387 ATWTLFN 393
                F 
Sbjct: 719 LLMLFFG 725

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 55/425 (12%), Positives = 119/425 (28%), Gaps = 54/425 (12%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYP 296
            +       V+ + +    +     ++         IDE +++ +   +++ L R  +  
Sbjct: 255 GLSKLFKKRVFEEQDLQFTKELLRLLSSAC------IDETMRTYITENYLQLLERSLNVE 308

Query: 297 QLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP 356
            +Q  +A  L    S T      +       IF+  ++   V   + +V AL  ++  + 
Sbjct: 309 DVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINAISRRIVPKVEMSVEALAYLSLKAS 366

Query: 357 RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQL 416
               +  ++     LL  +        L      + N      +                
Sbjct: 367 VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXX 426

Query: 417 IRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476
                 + +     A     D      + ++   +   L   + + S +     +R I N
Sbjct: 427 XXXPAADKVGAEKAAKE---DILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYN 483

Query: 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHE--ESIKKEVSWIISN--ITCGNREQIQAVI 532
           I +  +F  Q +   GA+   L+ L +  +  E I+      ++   I        +   
Sbjct: 484 ITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYS 542

Query: 533 DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP 592
               I  +  LL  +                     EQIK       +  L +L      
Sbjct: 543 ALNAIPFLFELLPRSTPVDDNPLH----------NDEQIKLTDNYEALLALTNLASSETS 592

Query: 593 KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK 652
               VC                             +V        IENL   ++  +   
Sbjct: 593 DGEEVC---------------------------KHIVSTKVYWSTIENLMLDENVPLQRS 625

Query: 653 AVEIL 657
            +E++
Sbjct: 626 TLELI 630

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 5e-10
 Identities = 76/506 (15%), Positives = 155/506 (30%), Gaps = 155/506 (30%)

Query: 199 HDLNT---TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAM-----VDGVWSD 250
           H ++      +Y Y   L  F  +        V + + +   ++  ++     +D +   
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAF-------VDNFDCKDVQDMPKSILSKEEIDHIIMS 57

Query: 251 DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIA 310
            +++      LF  LLS           Q  +V +FVE ++R +Y        + ++ I 
Sbjct: 58  KDAVS-GTLRLFWTLLSK----------QEEMVQKFVEEVLRINYK-------FLMSPIK 99

Query: 311 S---GTSENTKVVID-----HGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
           +     S  T++ I+     +    +F K     +V  R Q    L              
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKY----NV-SRLQPYLKLRQA----------- 143

Query: 363 LSQGALIPLLAELNENANLS---MLRTATWTLFNFCRGKPQPPFNQVRPALPVLA-QLIR 418
                    L EL    N+    +L +          GK              +A  +  
Sbjct: 144 ---------LLELRPAKNVLIDGVLGS----------GK------------TWVALDVCL 172

Query: 419 SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIV 478
               +V     + + +L+    +  + V+E      L +LL       + P      N  
Sbjct: 173 --SYKVQCKMDFKIFWLNLKNCNSPETVLE-----MLQKLLYQ-----IDP------NWT 214

Query: 479 KGDDFQTQCIINCGALPYFLDMLV--HNHEES--IKKEV--SWIIS--NITCGNREQI-- 528
              D  +   +   ++   L  L+    +E    +   V  +   +  N++C    +I  
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC----KILL 270

Query: 529 ----QAVID--SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC-VK 581
               + V D  S      ++L  ++   T  E    +          + + L RE     
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVLTTN 326

Query: 582 PLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA-EGLEKIEN 640
           P   L + A+     +     +N   V            + ++   ++E +   LE  E 
Sbjct: 327 PRR-LSIIAESIRDGLAT--WDNWKHV------------NCDKLTTIIESSLNVLEPAEY 371

Query: 641 LQSHDDNGISEKAVEI----LETYWS 662
            +  D   +   +  I    L   W 
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWF 397

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 65/326 (19%), Positives = 103/326 (31%), Gaps = 95/326 (29%)

Query: 3   VLKIQGYSSWMWKEKVENGMEVKISEAY-----NCYRLENILIEESSVMNNLVILCVHC- 56
            + +    S     KV+  M+ KI   +     NC   E       +V+  L  L     
Sbjct: 165 WVALDVCLS----YKVQCKMDFKI---FWLNLKNCNSPE-------TVLEMLQKLLYQID 210

Query: 57  ------CDHLINLVPSSTSFQN-LTNLVVS--HCKRLKIVL----TSSIA-------KTL 96
                  DH  N+     S Q  L  L+ S  +   L +VL     +          K L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCKIL 269

Query: 97  VRLRYMEI---ESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFT 153
           +  R+ ++    S    T I L          +T  E+K L LL+               
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDH----HSMTLTPDEVKSL-LLK-------YLDCRPQD 317

Query: 154 FPSLEILVVNYCP-NMKIFSGGELSTPNLHKVQLSRWDGEEHWIWVH----DLNTTIK-- 206
            P  E+L  N  P  + I    E       +  L+ WD      W H     L T I+  
Sbjct: 318 LPR-EVLTTN--PRRLSII--AESI-----RDGLATWDN-----WKHVNCDKLTTIIESS 362

Query: 207 --YL-------YLKKLGEFLQSQRSRISTPVLS-LNLQSKLEILPAMVDGVWSDDNSL-- 254
              L          +L  F  S  + I T +LS +        +  +V+       SL  
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVE 418

Query: 255 -QLEATTLFINLLSFDRSPPIDEVIQ 279
            Q + +T+ I  +  +    ++    
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 71/404 (17%), Positives = 131/404 (32%), Gaps = 129/404 (31%)

Query: 34  RLENILIEESSVMNNLVILCVHCCDHLIN-------------LVPSSTSFQNLTN-LVVS 79
            L  +L  +    N L++L      ++ N             L+  +T F+ +T+ L  +
Sbjct: 233 ELRRLLKSKPYE-NCLLVL-----LNVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAA 284

Query: 80  HCKRLKIV-----LTSSIAKTLVRLRYMEIESCDKITEIV----LVDDVVA---QDEVIT 127
               + +      LT    K+L+ L+Y++    D   E++        ++A   +D + T
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 128 FRELKELNLLQMQNLISFCSGN------------CAFTFPS--------LEIL---VVNY 164
           +   K +N  ++  +I                   +  FP         L ++   V+  
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKS 402

Query: 165 CPNMKIFSGGELSTPNLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRI 224
                      +    LHK  L     +E  I +  +     YL LK   E   +    I
Sbjct: 403 DV--------MVVVNKLHKYSLVEKQPKESTISIPSI-----YLELKVKLENEYALHRSI 449

Query: 225 STPVLSLNLQSKLE---ILPAMVDGVWSD------DNSLQLEATTLFINL-LSFDRSPPI 274
              V   N+    +   ++P  +D  +         N    E  TLF  + L F      
Sbjct: 450 ---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------ 500

Query: 275 DEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT--------KVVIDHGAV 326
                     RF+E  +R D        AW     ASG+  NT          + D+   
Sbjct: 501 ----------RFLEQKIRHD------STAWN----ASGSILNTLQQLKFYKPYICDND-- 538

Query: 327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIP 370
           P + +L+      +       L  +  +    +   L + AL+ 
Sbjct: 539 PKYERLVN----AILD----FLPKIEENLICSKYTDLLRIALMA 574

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 61.7 bits (148), Expect = 6e-10
 Identities = 42/267 (15%), Positives = 96/267 (35%), Gaps = 13/267 (4%)

Query: 195 WIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSL 254
              + D N  ++ L +K LG  +   +      ++         +   M+       +  
Sbjct: 54  LKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDT-------LCTNMLSDKEQLRDIS 106

Query: 255 QLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS 314
            +   T+   L        +   +   +  R    + +Q+   +Q +A   + ++ S   
Sbjct: 107 SIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS-RQ 165

Query: 315 ENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE 374
               V      +   +  L SP + VRK+T+ ALG++      C ++V     +  LL+E
Sbjct: 166 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV---MSCGNIVFVD-LIEHLLSE 221

Query: 375 LNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSY 434
           L++N ++S  RT    +    R         +   +P++ +    +D+E+      A   
Sbjct: 222 LSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES 281

Query: 435 LSDGTNDKVQAVIEAGVYPRLVELLGH 461
                  +V   +   +    ++ L +
Sbjct: 282 FVRRCPKEVYPHVST-IINICLKYLTY 307

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 42/350 (12%), Positives = 123/350 (35%), Gaps = 36/350 (10%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFL---MRQD 294
           +++P +++ +   +   + +   + ++  +  +     +   + ++   +EF+   +  D
Sbjct: 324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL--FAQNCGNHILEPVLEFVEQNITAD 381

Query: 295 YPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
             + +  A  A  +I  G  +  +    H A+P  + L+   S+ V++ T W +G +A  
Sbjct: 382 NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441

Query: 355 SPRCRDLVLSQGALIPLLAEL--NENANLSMLRTATWTLFNFCRGKPQPPFNQVRPAL-P 411
                + +  Q  L  ++         +  +    +WT+ N      +   + +      
Sbjct: 442 ---VAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPA 498

Query: 412 VLAQLIRS-----NDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLGHSS 463
           ++  LI +     N+      A  AL+ + +   D V     +    V  +L + +    
Sbjct: 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE 558

Query: 464 SSVLTPALRTIRNIVK-------------GDDFQTQCIINCGALPYFLDMLVHNHEESIK 510
           + +     ++++ +                   +    +    +  F  +L       I+
Sbjct: 559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADM---LMGLFFRLLEKKDSAFIE 615

Query: 511 KEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS 560
            +V + IS +     +  +  +++     ++  L   +      A   I+
Sbjct: 616 DDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIA 664

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 58/352 (16%), Positives = 113/352 (32%), Gaps = 28/352 (7%)

Query: 238 EILPAMVDGVWSDDN-SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYP 296
                +V  +   D  + +  A  LF           +   +++ +   F         P
Sbjct: 125 AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR-----VSSAVKAELRQYFRNLCSDDT-P 178

Query: 297 QLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP 356
            ++  AA  L   A     +    +    +P+F  L +     VR   V A  N+A    
Sbjct: 179 MVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEACVNIA---- 231

Query: 357 RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQL 416
           +       +  ++P L +  E+ +  +            +             +P    L
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD--LVPAFQNL 289

Query: 417 IRSNDEEVLTDACWALSYLSDG-TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR 475
           ++  + EV   A   +    +  + D  + VI + + P + EL+  ++  V +     I 
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIM 349

Query: 476 NIVK--GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID 533
            +    G D   + +     LP FL  L     E        IISN+ C N       + 
Sbjct: 350 GLSPILGKDNTIEHL-----LPLFLAQLKDECPEVRLN----IISNLDCVNEVIGIRQLS 400

Query: 534 SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCD 585
             L+  IV L ++ ++  +      +         E     +   C+  L D
Sbjct: 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 23/242 (9%)

Query: 250 DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNI 309
            D +L+  +      L +  R   +  ++        ++ L+      ++      L  I
Sbjct: 333 SDWNLRKCSAAALDVLANVYRDELLPHILP------LLKELLFHHEWVVKESGILVLGAI 386

Query: 310 ASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALI 369
           A G  +     +    +P  ++ L+     VR  T W L   A            +  + 
Sbjct: 387 AEGCMQGMIPYLPE-LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445

Query: 370 PLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDAC 429
            LL  + ++ N  +   A                  +   L  L         + L    
Sbjct: 446 ELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILY 504

Query: 430 WALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII 489
            A+  L+D       +V      P  ++        +L P L    N++K +D     ++
Sbjct: 505 DAIGTLAD-------SVGHHLNKPEYIQ--------MLMPPLIQKWNMLKDEDKDLFPLL 549

Query: 490 NC 491
            C
Sbjct: 550 EC 551

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 38/259 (14%), Positives = 83/259 (32%), Gaps = 13/259 (5%)

Query: 249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTN 308
           S+D   +  +  +  N +           +   +    +  +     P ++      +T 
Sbjct: 59  SEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITT 116

Query: 309 IASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD---LVLSQ 365
           IAS              +P    LL S   +  +    AL  +  DS    D   L    
Sbjct: 117 IASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172

Query: 366 GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVL 425
             +IP   +  ++++  +   A   +  F   + Q     +   +  L  L    + EV 
Sbjct: 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVR 232

Query: 426 TDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQT 485
            + C AL  L +   D++   +   +   +++       +V   A      + +    + 
Sbjct: 233 KNVCRALVMLLEVRMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLAEQPICK- 290

Query: 486 QCIINCGALPYFLDMLVHN 504
              +    LP  + +LV+ 
Sbjct: 291 --DVLVRHLPKLIPVLVNG 307

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 36/143 (25%)

Query: 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-ENANLSM 383
            +      +A  +  VR+    AL  + GD            A  PLL  L+ E+  +  
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRM-GDE-----------AFEPLLESLSNEDWRIR- 59

Query: 384 LRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKV 443
              A W + NF          Q   A+  L +L+  +   V + A  +L  +        
Sbjct: 60  -GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ 102

Query: 444 QAVIEAGVYPRLVELLGHSSSSV 466
           + V  A     + +L    +   
Sbjct: 103 ERVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 34/143 (23%)

Query: 290 LMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALG 349
            M  +   ++   + AL+ +               A    ++ L++    +R    W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 350 NVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPA 409
           N   D  R  +       LI LL    E+ +  +   A  +L     G  +         
Sbjct: 68  NF-QD-ERAVE------PLIKLL----EDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 410 LPVLAQLIRSNDEEVLTDACWAL 432
              + +L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 12/68 (17%)

Query: 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVR 341
            V   ++ L   D   ++  AA +L  I                     KL  + +   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 342 KQTVWALG 349
           K  V  L 
Sbjct: 122 KVAVNYLE 129

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 49.8 bits (118), Expect = 8e-07
 Identities = 40/218 (18%), Positives = 71/218 (32%), Gaps = 19/218 (8%)

Query: 233 LQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR 292
                  L  +++    DD + +L A      +L    S     V++   +  F+   + 
Sbjct: 28  ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALS 85

Query: 293 QDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALG--N 350
           Q+  ++  KA  AL  +       +K  +   A    V LL SP   +R +T+  L    
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 351 VAGDSPRCRDLVLS---------QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP 401
              DS   R  +           + A   L   +    N S        + +      Q 
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNM---LNSSADSGHLTLILDEIPSLLQN 200

Query: 402 PFNQVR-PALPVLAQLIRSNDEEVLTDACWALSYLSDG 438
               +   AL VL + +     E +      +S + DG
Sbjct: 201 DNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDG 238

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
               +  ++  D   L++  A+ +    +GT  N+ V        +    ++  + DVR+
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP 402
             V ALG V                +  ++  L+++ N  +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 403 FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
                 A+ VL  L +   + V   A  ALS +     +K+   +  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	670
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.85
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.81
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.78
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.75
3grl_A	651	General vesicular transport factor P115; vesicle t	99.73
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.73
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.71
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.7
3grl_A	651	General vesicular transport factor P115; vesicle t	99.68
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.66
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.64
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.62
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.58
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.54
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.53
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.53
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.52
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.52
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.48
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.47
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.47
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.42
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.41
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.39
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.39
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.3
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.29
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.28
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.26
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.01
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.99
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.97
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.95
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.95
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.95
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.92
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.88
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.88
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.88
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.78
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.71
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.7
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.67
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.66
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.63
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.63
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.62
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.59
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.59
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.59
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.56
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.55
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.54
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.53
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.52
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.52
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.51
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.51
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.49
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.46
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.43
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.43
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.43
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.43
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.42
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.41
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.39
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.37
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.37
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.36
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.35
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.35
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.32
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.32
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.3
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.28
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.28
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.28
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.27
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.25
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.24
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.23
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.23
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.2
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.17
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.15
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.11
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.09
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.06
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.05
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.0
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.95
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.93
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.92
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.9
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.88
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.84
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.83
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.82
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.64
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.64
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.59
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.49
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.49
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.44
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.38
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.26
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.2
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.2
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.17
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.12
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.08
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.05
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.85
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.83
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.8
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.76
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.76
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.73
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.73
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.71
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.62
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.5
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.4
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.18
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.11
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.84
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.79
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.01
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.97
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.58
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.58
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.48
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	94.34
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.08
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.97
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	93.65
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	92.8
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.61
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.16
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.1
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	91.87
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	91.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	90.23
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.37
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	87.91
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	87.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	86.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	85.98
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	85.12
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	84.61
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	83.88
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	83.05
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	82.59
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.0

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=9.7e-51  Score=433.18  Aligned_cols=422  Identities=46%  Similarity=0.791  Sum_probs=389.1

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .++.+++.++++|++.|..|+..++++++.+++++++.+++.|++|.|+++|++.+++++|..|+|+|+|++.++++.++
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            48999999999999999999999999999887888999999999999999998776589999999999999999999999


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC----ChhHHHHHHHHHHhh
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA----NLSMLRTATWTLFNF  394 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~----~~~~~~~a~~~L~~l  394 (670)
                      .+++.|++|.|+.+|+++++++++.|+|+|+|++.+.+..+..+.+.|++++++.++....    ...+++.++|++.++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995432    235788999999999


Q ss_pred             hcCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHH
Q 037562          395 CRGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT  473 (670)
Q Consensus       395 ~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  473 (670)
                      +.+. +........+++|.|+.++.+++++++..++++|++++...++..+.+.+.|+++.|+.++.+++..++..|+++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9886 555566678999999999999999999999999999999888888889999999999999999999999999999


Q ss_pred             HHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHH
Q 037562          474 IRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKK  553 (670)
Q Consensus       474 L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  553 (670)
                      |+|++.+++.....+++.|+++.|+.++.++ ++.+++.|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++.
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence            9999999988888899999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhc
Q 037562          554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAE  633 (670)
Q Consensus       554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g  633 (670)
                      +|+++|.|++..+++++..++++.|+++.|++++++.|++++..++++|.++++.+++.       ...+.+...|+++|
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~g  449 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEECG  449 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc-------cchHHHHHHHHHcC
Confidence            99999999999889999999999999999999999999999999999999999887653       24567889999999


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCccccC
Q 037562          634 GLEKIENLQSHDDNGISEKAVEILETYWSSRVIGR  668 (670)
Q Consensus       634 ~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~~  668 (670)
                      |++.|+.|+.|++++|+++|.++|++||++|+.++
T Consensus       450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~  484 (510)
T 3ul1_B          450 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEED  484 (510)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence            99999999999999999999999999998776554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.9e-49  Score=425.93  Aligned_cols=423  Identities=45%  Similarity=0.771  Sum_probs=389.3

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..++.+++.+.++|++.+..|+..++++.+.++.+.++.+++.|++|.|+++|...+++.++..|+++|++++.++++.+
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            45899999999999999999999999998887788899999999999999999876668999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC----ChhHHHHHHHHHHh
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA----NLSMLRTATWTLFN  393 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~----~~~~~~~a~~~L~~  393 (670)
                      ..+++.|++|.|+.++.++++.+++.|+|+|+|++.+++..+..+.+.|++++++.++....    ...+++.++|++.+
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995432    23578899999999


Q ss_pred             hhcCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHH
Q 037562          394 FCRGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALR  472 (670)
Q Consensus       394 l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  472 (670)
                      ++.+. +........+++|.|+.++.+++++++..++++|++++...++..+.+.+.|+++.|+.+|.+++..++..|++
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~  315 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  315 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence            99887 55566667899999999999999999999999999999998888888999999999999999999999999999


Q ss_pred             HHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHH
Q 037562          473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTK  552 (670)
Q Consensus       473 ~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  552 (670)
                      +|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++
T Consensus       316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~  394 (529)
T 3tpo_A          316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  394 (529)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence            99999999988888899999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh
Q 037562          553 KEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA  632 (670)
Q Consensus       553 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (670)
                      ..|+++|+|++..+++++..++++.|++++|++++++.|++++..++++|.+++..++...       ..+.+...|+++
T Consensus       395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~  467 (529)
T 3tpo_A          395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEEC  467 (529)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHC
Confidence            9999999999998889999999999999999999999999999999999999998876542       456788999999


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHhcCCccccC
Q 037562          633 EGLEKIENLQSHDDNGISEKAVEILETYWSSRVIGR  668 (670)
Q Consensus       633 g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~~  668 (670)
                      ||++.|+.|+.|++++|+++|..+|++||++|+.++
T Consensus       468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~  503 (529)
T 3tpo_A          468 GGLDKIEALQRHENESVYKASLNLIEKYFSVEEEED  503 (529)
T ss_dssp             TCHHHHTGGGGCSSHHHHHHHHHHHHHHC-------
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence            999999999999999999999999999998765543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.1e-44  Score=388.79  Aligned_cols=429  Identities=75%  Similarity=1.156  Sum_probs=392.1

Q ss_pred             hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      ...++.+++.+.+++++++..|+++|+++++....+....+++.|+++.|+++|.+++++.++..|+++|++++.++++.
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            35689999999999999999999999999887645778999999999999999998765899999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                      +..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+..+.+.|++++|+.++..+.++.+++.++|+|.+++.
T Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~  232 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR  232 (528)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999988888899999999999999999777889999999999999999


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      ..+........+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.++.+|.++++.++..|+++|++
T Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n  312 (528)
T 4b8j_A          233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN  312 (528)
T ss_dssp             SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence            88777778889999999999999999999999999999999888888889999999999999999999999999999999


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA  556 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  556 (670)
                      ++.+.+.....+++.|+++.|+.++.++.++.++..|+|+|+|++.+++.....+++.|+++.|+.++.+++++++..|+
T Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~  392 (528)
T 4b8j_A          313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA  392 (528)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            99988888888899999999999998765789999999999999998888899999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562          557 WAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE  636 (670)
Q Consensus       557 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  636 (670)
                      ++|++++..++++...++.+.|+++.|+.++++.+++++..++++|.+++..++.......  ...+.+...+.+.|+++
T Consensus       393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~  470 (528)
T 4b8j_A          393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE  470 (528)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHH
Confidence            9999999987889999999999999999999999999999999999999988765332111  13556899999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562          637 KIENLQSHDDNGISEKAVEILETYWSSRVIG  667 (670)
Q Consensus       637 ~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~  667 (670)
                      .|..+++|.+++++++|.+++++||+.++.+
T Consensus       471 ~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~  501 (528)
T 4b8j_A          471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDD  501 (528)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCCcccc
Confidence            9999999999999999999999999876543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2e-42  Score=373.07  Aligned_cols=426  Identities=54%  Similarity=0.826  Sum_probs=387.2

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +.++.+++.+++++++++..|++.|.++++....+....+++.|+++.|+++|.+++++.++..|+++|++++.++++.+
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            56899999999999999999999999998765456678899999999999999987338999999999999999888999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++ .+.++.++..++|+|.+++..
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~  245 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRG  245 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999998888899999999999999999 558889999999999999988


Q ss_pred             C-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          398 K-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       398 ~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      . +........+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++|++
T Consensus       246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~  325 (530)
T 1wa5_B          246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  325 (530)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence            7 666777778999999999999999999999999999998888778888899999999999999999999999999999


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA  556 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  556 (670)
                      ++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|++++.+++...+.+++.|+++.|+.++.+++++++..|+
T Consensus       326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  404 (530)
T 1wa5_B          326 IVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC  404 (530)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9998888888888999999999999999 999999999999999998888888899999999999999999999999999


Q ss_pred             HHHHHhcCCCCH--HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhch
Q 037562          557 WAISNATKFGTH--EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEG  634 (670)
Q Consensus       557 ~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  634 (670)
                      ++|++++..+.+  +....+.+.|+++.|+.++.+.++.++..++++|.+++...+.......  ...+.+...+.+.|+
T Consensus       405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~  482 (530)
T 1wa5_B          405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKAGG  482 (530)
T ss_dssp             HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHTTH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc--ccccHHHHHHHHcCc
Confidence            999999987666  7888999999999999999999999999999999999987765321000  123568899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562          635 LEKIENLQSHDDNGISEKAVEILETYWSSRVIG  667 (670)
Q Consensus       635 ~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~  667 (670)
                      ++.|..|+.++++++++.|..+|++||++++.+
T Consensus       483 ~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          483 MEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            999999999999999999999999999877653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.4e-41  Score=358.18  Aligned_cols=425  Identities=55%  Similarity=0.872  Sum_probs=381.8

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      ++.+++.++++++.++..|+..|+++++....+....+++. |+++.|++++++++++.++..|+++|.+++.++++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78999999999999999999999998764335566778887 99999999999983389999999999999998888888


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                      .+++.|+++.|+.+++++++.++..|+++|++++.+.+..+..+.+.|+++.++.++.++.+..++..++++|.+++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            89999999999999999999999999999999999888889999999999999999965678999999999999999876


Q ss_pred             -CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          399 -PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       399 -~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                       +........+++|.++.++.++++.++..++++|++++...+.....+.+.|+++.++.++.++++.++..|+++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             5555556689999999999999999999999999999988777777788899999999999999999999999999999


Q ss_pred             hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562          478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAW  557 (670)
Q Consensus       478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  557 (670)
                      +.+.+...+.+++.|+++.|+.++.++ ++.++..|+++|++++.+++...+.+++.++++.|+.++.+++++++..|++
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~  340 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW  340 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            998887777788899999999999998 9999999999999999888888888999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH
Q 037562          558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK  637 (670)
Q Consensus       558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  637 (670)
                      +|++++..++++..+.+++.|+++.|++++++++++++..++++|.+++..++.......  ...+.+...+.+.||++.
T Consensus       341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~  418 (450)
T 2jdq_A          341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLDK  418 (450)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC--SCCCHHHHHHHHHHCHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc--cchhHHHHHHHHcCcHHH
Confidence            999999876778888889999999999999999999999999999999987665321000  123568899999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562          638 IENLQSHDDNGISEKAVEILETYWSSRVIG  667 (670)
Q Consensus       638 l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~  667 (670)
                      |..|+++++.++++.|..+|++||++|+.+
T Consensus       419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          419 IEFLQSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            999999999999999999999999877654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=6.3e-38  Score=334.26  Aligned_cols=395  Identities=24%  Similarity=0.370  Sum_probs=339.5

Q ss_pred             hhHHHHhhcchhhhhhccccCCCccccchhhhhh--ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562          204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKL--EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQS  280 (670)
Q Consensus       204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  280 (670)
                      +.|.-+...++.++..       +.+ +|++..+  |.+|.|+++|+ ++++.+|..|+|+|.++++++ .+....+++.
T Consensus        72 ~~q~~a~~~~rklls~-------e~~-ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~  142 (510)
T 3ul1_B           72 ESQLQATQAARKLLSR-------EKQ-PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDG  142 (510)
T ss_dssp             HHHHHHHHHHHHHHTC-------SSC-CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcC-------CCC-chHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHC
Confidence            3444555555555543       333 3566655  67999999997 556899999999999999875 6778889999


Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCC
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS-----VDVRKQTVWALGNVAGDS  355 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~  355 (670)
                      |++|.|+++|.+++ +++++.|+++|++++.+++..++.+.+.|+++.++.++..++     ..+...+++++.+++.+.
T Consensus       143 GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  221 (510)
T 3ul1_B          143 GAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  221 (510)
T ss_dssp             THHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence            99999999999999 899999999999999988999999999999999999998754     456789999999999766


Q ss_pred             chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHH
Q 037562          356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP-FNQVRPALPVLAQLIRSNDEEVLTDACWALSY  434 (670)
Q Consensus       356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~  434 (670)
                      ..........++++.|+.++ .+.+++++..++|+|++++....... .....|+++.|+.++.+++..++..+++++++
T Consensus       222 ~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~n  300 (510)
T 3ul1_B          222 NPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN  300 (510)
T ss_dssp             SSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHH
Confidence            54444444557789999998 77889999999999999998763332 23347899999999999999999999999999


Q ss_pred             hccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHH
Q 037562          435 LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS  514 (670)
Q Consensus       435 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~  514 (670)
                      ++..++.....+.+.|+++.++.++.+++..++..|+++|+|++.+++.....+++.|+++.|+.++.++ +..++++|+
T Consensus       301 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa  379 (510)
T 3ul1_B          301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAA  379 (510)
T ss_dssp             HTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHH
T ss_pred             hhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHH
Confidence            9999888888999999999999999999999999999999999999988889899999999999999999 999999999


Q ss_pred             HHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC----C-CHHHHHHHHHcCCcHHHHhhcc
Q 037562          515 WIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF----G-THEQIKHLVREGCVKPLCDLLL  588 (670)
Q Consensus       515 ~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~----~-~~~~~~~l~~~~~i~~L~~ll~  588 (670)
                      |+|+|++. ++++++..+++.|+++.|+++|.+.|++++..++++|.++...    + .......+.+.|+++.|..+..
T Consensus       380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  459 (510)
T 3ul1_B          380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  459 (510)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence            99999987 5788889999999999999999999999999999999999752    1 2334455668999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhhh
Q 037562          589 CADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       589 ~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      +++.++...|..+|.++|..++
T Consensus       460 ~~n~~i~~~A~~iie~yf~~~~  481 (510)
T 3ul1_B          460 HENESVYKASLNLIEKYFSVEE  481 (510)
T ss_dssp             CSSHHHHHHHHHHHHHHCC---
T ss_pred             CCCHHHHHHHHHHHHHHCCCcc
Confidence            9999999999999999986543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.3e-37  Score=330.86  Aligned_cols=375  Identities=24%  Similarity=0.390  Sum_probs=329.5

Q ss_pred             hhhhhh--ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 037562          232 NLQSKL--EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTN  308 (670)
Q Consensus       232 ~~~~~~--~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~  308 (670)
                      |++..+  |.+|.|++.|. ++++.++..|+|+|.++++++ .+....+++.|++|.|+.++.+++ +++++.|+++|++
T Consensus       111 ~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~n  188 (529)
T 3tpo_A          111 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGN  188 (529)
T ss_dssp             CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence            454444  77999999997 566899999999999999875 566788999999999999999999 8999999999999


Q ss_pred             HcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhH
Q 037562          309 IASGTSENTKVVIDHGAVPIFVKLLASPS-----VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSM  383 (670)
Q Consensus       309 l~~~~~~~~~~i~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~  383 (670)
                      ++.++++.+..+++.|+++.|+.++..++     ..+...+++++.+++.+...........++++.|+.++ .+.++++
T Consensus       189 La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v  267 (529)
T 3tpo_A          189 IAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEV  267 (529)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHH
T ss_pred             HhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHH
Confidence            99988999999999999999999998644     45678999999999977654444444567789999998 7888999


Q ss_pred             HHHHHHHHHhhhcCCCCCC-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC
Q 037562          384 LRTATWTLFNFCRGKPQPP-FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS  462 (670)
Q Consensus       384 ~~~a~~~L~~l~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  462 (670)
                      +..++|+|.+++...+... .....|++|.|+.++.+++..++..++.++++++..++.....+.+.|+++.|+.++.++
T Consensus       268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~  347 (529)
T 3tpo_A          268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP  347 (529)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC
Confidence            9999999999998763332 233478999999999999999999999999999998888888999999999999999999


Q ss_pred             CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHH
Q 037562          463 SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIV  541 (670)
Q Consensus       463 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~  541 (670)
                      ++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ +..++..|+|+|+|++. +++++...+++.|+++.|+
T Consensus       348 ~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~  426 (529)
T 3tpo_A          348 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLM  426 (529)
T ss_dssp             SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHH
Confidence            999999999999999999988888899999999999999999 99999999999999987 5788889999999999999


Q ss_pred             HHhhcCChhHHHHHHHHHHHhcCC----CC-HHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562          542 NLLQNTEFDTKKEAAWAISNATKF----GT-HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       542 ~ll~~~~~~v~~~a~~aL~~l~~~----~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      ++|.+.|++++..++.+|.++...    +. ......+.+.|+++.|..+..+++.+|...|..++.++|..++
T Consensus       427 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~  500 (529)
T 3tpo_A          427 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE  500 (529)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            999999999999999999999742    12 3344556789999999999999999999999999999986543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=3.5e-36  Score=325.86  Aligned_cols=397  Identities=14%  Similarity=0.096  Sum_probs=333.1

Q ss_pred             hhhHHHHhhcchhhhhhc---cccCCCccccchhhhhhccHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCcHHHH
Q 037562          203 TTIKYLYLKKLGEFLQSQ---RSRISTPVLSLNLQSKLEILPAMVDGVWSD--DNSLQLEATTLFINLLSFDRSPPIDEV  277 (670)
Q Consensus       203 ~~i~~l~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~  277 (670)
                      ..++.++.-.+.++..+.   .+...+.+.     ...+.++.++++|.++  +.+++..|+++|..++..  .+....+
T Consensus       344 ~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g-----~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~l  416 (810)
T 3now_A          344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDG-----AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKL  416 (810)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTTSCCSSTTT-----HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCccccchhhc-----cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHH
Confidence            456777766666665322   222333322     1224478888988877  889999999999999665  4555566


Q ss_pred             H-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-----------------------------hhH---HHHHhCC
Q 037562          278 I-QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS-----------------------------ENT---KVVIDHG  324 (670)
Q Consensus       278 ~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~~  324 (670)
                      + +.|++|.|++++++++ +.+++.|+++|+|++.+++                             ..+   +.+++.|
T Consensus       417 v~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG  495 (810)
T 3now_A          417 IEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG  495 (810)
T ss_dssp             HHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence            6 5799999999999988 8999999999999998542                             122   7889999


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC-h
Q 037562          325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP-F  403 (670)
Q Consensus       325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~  403 (670)
                      ++|.|+.+++++++.+++.|+|+|+|++.+ +++|..+.+.|++++|+.++ .+.++..++.|+|+|.+++....... +
T Consensus       496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~  573 (810)
T 3now_A          496 ITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSF  573 (810)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence            999999999999999999999999999965 66899999999999999999 66778899999999999987542211 1


Q ss_pred             --hhhhhhHHHHHHhhccCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 037562          404 --NQVRPALPVLAQLIRSND-EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG  480 (670)
Q Consensus       404 --~~~~~~i~~L~~lL~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  480 (670)
                        ....+++|.|+.+|.++. ...+..|+++|.|++..+++..+.+++.|+++.|+.++.++++.++..|+++|+|++.+
T Consensus       574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~  653 (810)
T 3now_A          574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS  653 (810)
T ss_dssp             TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred             cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence              123578999999998663 34557899999999998888888899999999999999999999999999999999986


Q ss_pred             CchhhHHHHh-CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhHHHHHHHH
Q 037562          481 DDFQTQCIIN-CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDTKKEAAWA  558 (670)
Q Consensus       481 ~~~~~~~l~~-~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~a  558 (670)
                      .+. ...+++ .|.++.|+.++.+. +..+++.|+|+|+|++.+++...+.+++ .|+++.|++++.+++.+++..|+++
T Consensus       654 ~~~-~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a  731 (810)
T 3now_A          654 EDV-IKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI  731 (810)
T ss_dssp             HHH-HHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             hHH-HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence            654 444554 78999999999998 9999999999999999888888999998 8999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC---ChHHHHHHHHHHHHHHHhhhhh
Q 037562          559 ISNATKFGTHEQIKHLVREGCVKPLCDLLLCA---DPKIVTVCLEGLENILKVGVAE  612 (670)
Q Consensus       559 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~  612 (670)
                      +.|++.. +++....+.+.|++++|.++++..   +++++..|..+|.+++..+.-.
T Consensus       732 L~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          732 ILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence            9999985 678899999999999999999654   7899999999999999877643

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4.4e-36  Score=314.85  Aligned_cols=368  Identities=19%  Similarity=0.232  Sum_probs=312.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      .++.++.+|++++ ++++..|+++|.+++.+++..+..+++.|+++.|+++|+++++.++..|+++|.|++.++++.+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999998 899999999999999877788889999999999999999999999999999999999988889999


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc--------c--------CChhHH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR--------S--------NDEEVL  425 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--------~--------~~~~v~  425 (670)
                      +.+.|++++|+.+|..+.++++++.++|+|+|++..+..+..... |++|.|+.++.        +        .+++++
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995478899999999999999998544333444 99999999993        2        256777


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHc-CCHHHHHHhcCC------CCccchhHHHHHHHHhhcC------------------
Q 037562          426 TDACWALSYLSDGTNDKVQAVIEA-GVYPRLVELLGH------SSSSVLTPALRTIRNIVKG------------------  480 (670)
Q Consensus       426 ~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~------------------  480 (670)
                      ..++++|+|++.. ++....+.+. |+++.|+.++.+      .+..++..|+.++.+++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 6677778887 999999999985      4567888999999998631                  


Q ss_pred             --------------------------------CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH--
Q 037562          481 --------------------------------DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE--  526 (670)
Q Consensus       481 --------------------------------~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~--  526 (670)
                                                      .+...+.+++.++++.|+.+|.+..++.+++.|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1123344556778899999998776789999999999999986433  


Q ss_pred             -HH-HHHH-hcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh------HHHHH
Q 037562          527 -QI-QAVI-DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP------KIVTV  597 (670)
Q Consensus       527 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~~~  597 (670)
                       .. +..+ +.|++|.|++++.+++.++++.|+++|.+++..  + ....++..|+++.|++++...++      ++...
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 3344 689999999999999999999999999999984  3 34556677899999999987643      68889


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCccccC
Q 037562          598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD-DNGISEKAVEILETYWSSRVIGR  668 (670)
Q Consensus       598 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~~l~~~~~~~~~~~  668 (670)
                      +++++.+++....             .....+.++||++.|.+|+.+. ++++++.|.++|+.||.+.+.+.
T Consensus       397 ~l~~l~ni~~~~~-------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~  455 (457)
T 1xm9_A          397 ACYTVRNLMASQP-------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG  455 (457)
T ss_dssp             HHHHHHHHHTTCT-------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred             HHHHHHHHHhcCH-------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence            9999999885432             2577888999999999999999 99999999999999999887653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.8e-35  Score=319.77  Aligned_cols=427  Identities=17%  Similarity=0.184  Sum_probs=356.4

Q ss_pred             hhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC
Q 037562          203 TTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGV  282 (670)
Q Consensus       203 ~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~  282 (670)
                      ..++......+.++..+...+.....        .|.+|.+++.+++++++++..|+++|.+++... ......+.+.|+
T Consensus        74 ~~~~~~a~~~L~~ls~~~~~~~~i~~--------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~  144 (529)
T 1jdh_A           74 VETARCTAGTLHNLSHHREGLLAIFK--------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGG  144 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHH--------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHH--------cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCC
Confidence            44677777777777665443222221        277999999999999999999999999998874 455677778999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP-SVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      ++.|++++.+++ ++++..++.+|.+++.++++.+..+.+.|+++.++.++++. +...+..++.+|.+++.. +..+..
T Consensus       145 i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~  222 (529)
T 1jdh_A          145 LQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA  222 (529)
T ss_dssp             HHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHH
Confidence            999999999988 89999999999999998899999999999999999999874 456777889999999964 567888


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND  441 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  441 (670)
                      +.+.|+++.++.++ .+.++.+++.++|+|.+++...+..  ....+++|.+++++.+++++++..++++|++++..+++
T Consensus       223 ~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~  299 (529)
T 1jdh_A          223 IVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  299 (529)
T ss_dssp             HHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence            99999999999999 5668899999999999999876432  23468999999999999999999999999999988887


Q ss_pred             HHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCch---hhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562          442 KVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDF---QTQCIINCGALPYFLDMLVHNHEESIKKEVSWI  516 (670)
Q Consensus       442 ~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~  516 (670)
                      ....+.+.|+++.++.++.+  +++.++..|+++|+|++.+.+.   ....+.+.|+++.|+.++.++.++.++..|+|+
T Consensus       300 ~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~  379 (529)
T 1jdh_A          300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  379 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHH
Confidence            88889999999999999976  3368999999999999886543   345678999999999999988346999999999


Q ss_pred             HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHH----------------------hcCCCCHHHHHHH
Q 037562          517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN----------------------ATKFGTHEQIKHL  574 (670)
Q Consensus       517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~----------------------l~~~~~~~~~~~l  574 (670)
                      ++|++.+ +.....+.+.|+++.|++++.+++++++..|+|++.|                      ++.  +++.+..+
T Consensus       380 l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l  456 (529)
T 1jdh_A          380 IRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVI  456 (529)
T ss_dssp             HHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHH
T ss_pred             HHHHhcC-hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHH
Confidence            9999875 4445788899999999999998777777766665554                      554  45667788


Q ss_pred             HHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 037562          575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV  654 (670)
Q Consensus       575 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~  654 (670)
                      .+.|+++.|+.++.+++++++..+.+++.++....              .++..+.+.|+++.|..++.+++++|++.|.
T Consensus       457 ~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~--------------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~  522 (529)
T 1jdh_A          457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAA  522 (529)
T ss_dssp             HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--------------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHH
T ss_pred             hccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--------------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999999999999999976321              2477889999999999999999999999999


Q ss_pred             HHHHHh
Q 037562          655 EILETY  660 (670)
Q Consensus       655 ~~l~~~  660 (670)
                      +++.++
T Consensus       523 ~aL~~l  528 (529)
T 1jdh_A          523 AVLFRM  528 (529)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=309.48  Aligned_cols=369  Identities=17%  Similarity=0.197  Sum_probs=297.2

Q ss_pred             hhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------HHHHHHH
Q 037562          234 QSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDY-----------PQLQFKA  302 (670)
Q Consensus       234 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-----------~~v~~~a  302 (670)
                      ...++.++.++..+.+.+++   +..+.|..+...  .+.+..+++.|++|.|+++|+..+.           ++++..|
T Consensus        28 ~~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a  102 (458)
T 3nmz_A           28 GTKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA  102 (458)
T ss_dssp             -----------------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred             CchHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence            34557789999999887776   356666666554  4556889999999999999997542           6999999


Q ss_pred             HHHHHHHcCCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchh
Q 037562          303 AWALTNIASGTSENTKVVIDHGAV----------PIFVKLLASPS--VD-----VRK-------QTVWALGNVAGDSPRC  358 (670)
Q Consensus       303 ~~~L~~l~~~~~~~~~~i~~~~~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~~l~~~~~~~  358 (670)
                      +|+|+|++.+.++..+...+.+++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +++
T Consensus       103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~  181 (458)
T 3nmz_A          103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH  181 (458)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence            999999999888888888888877          66777776642  22     555       999999999765 889


Q ss_pred             HHHHHhcCChHHHHHHhcc----------cCChhHHHHHHHHHHhhhcCCCCCChhh--hhhhHHHHHHhhccCChhHHH
Q 037562          359 RDLVLSQGALIPLLAELNE----------NANLSMLRTATWTLFNFCRGKPQPPFNQ--VRPALPVLAQLIRSNDEEVLT  426 (670)
Q Consensus       359 ~~~i~~~~~i~~Ll~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~  426 (670)
                      |+.+.+.|++++|+.++..          ..++.+++.|+|+|.|++.+++.....+  ..|++|.|+.+|.+++++++.
T Consensus       182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~  261 (458)
T 3nmz_A          182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ  261 (458)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence            9999999999999999942          2346789999999999998864333333  356799999999999999999


Q ss_pred             HHHHHHHHhccC-ChHHHHHHHHcCCHHHHHHhc-CCCCccchhHHHHHHHHhhcCCchhhHHHH-hCCChHHHHHhhcc
Q 037562          427 DACWALSYLSDG-TNDKVQAVIEAGVYPRLVELL-GHSSSSVLTPALRTIRNIVKGDDFQTQCII-NCGALPYFLDMLVH  503 (670)
Q Consensus       427 ~al~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~~~~L~~~l~~  503 (670)
                      .++++|+|++.. ++.....+.+.|+++.|+.+| .+++..++..|+.+|+||+.+.++....+. ..|+++.|+.+|.+
T Consensus       262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~  341 (458)
T 3nmz_A          262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  341 (458)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999975 556777789999999999975 557788999999999999985555455565 78999999999988


Q ss_pred             CCch---hHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 037562          504 NHEE---SIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE  577 (670)
Q Consensus       504 ~~~~---~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  577 (670)
                      ..+.   ++++.|+|+|.|++.   +++++++.+.+.|+++.|+.++.+++.+++++|+++|.|++.. ++++...+.+.
T Consensus       342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~  420 (458)
T 3nmz_A          342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDM  420 (458)
T ss_dssp             CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence            7322   599999999999987   7889999999999999999999999999999999999999965 78899999999


Q ss_pred             CCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          578 GCVKPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       578 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      |+++.|+++++++++.++..|.++|.+++...
T Consensus       421 G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          421 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             THHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999998754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-36  Score=327.85  Aligned_cols=434  Identities=14%  Similarity=0.105  Sum_probs=349.4

Q ss_pred             hhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC--
Q 037562          204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG--  281 (670)
Q Consensus       204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g--  281 (670)
                      .++.-+...+.....+...+......        + +|.|+..++++++.++..|+.+|+++.+....+.....++.|  
T Consensus       305 ~~q~~A~~al~~aa~~~~~R~~I~~~--------g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i  375 (810)
T 3now_A          305 LQQRVACECLIAASSKKDKAKALCEQ--------G-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA  375 (810)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHTTHHH--------H-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHc--------C-cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence            34445555555555554433333322        3 489999999888999999999999997642112211222223  


Q ss_pred             --CHHHHHHhhcCC--CCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 037562          282 --VVPRFVEFLMRQ--DYPQLQFKAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP  356 (670)
Q Consensus       282 --~l~~L~~ll~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  356 (670)
                        +++.++++|.++  + ++++..|+++|.+++. +++.+..++ +.|+++.|+.++++++..++..|+++|+|++.+.+
T Consensus       376 ~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          376 LKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence              467788899887  6 7999999999999998 667777766 57999999999999999999999999999997542


Q ss_pred             -----------------------------hhH---HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh
Q 037562          357 -----------------------------RCR---DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN  404 (670)
Q Consensus       357 -----------------------------~~~---~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  404 (670)
                                                   ..+   +.+.+.|+++.|+.++ .+.++.++..|+|+|.|++.+.......
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~V  532 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKV  532 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                         122   5778999999999999 7788999999999999999765555555


Q ss_pred             hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH--HHHcCCHHHHHHhcCCCCc-cchhHHHHHHHHhhcCC
Q 037562          405 QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQA--VIEAGVYPRLVELLGHSSS-SVLTPALRTIRNIVKGD  481 (670)
Q Consensus       405 ~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~--~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~  481 (670)
                      ...|++|.|+.++.++++..+..|+++|++++...+.....  ....++++.|+.+|.++.. ..+..|+++|.|++..+
T Consensus       533 v~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~  612 (810)
T 3now_A          533 VQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN  612 (810)
T ss_dssp             HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence            56899999999999999999999999999998543322110  0113689999999986544 33568999999999988


Q ss_pred             chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562          482 DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDTKKEAAWAIS  560 (670)
Q Consensus       482 ~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~  560 (670)
                      +.....+++.|+++.|+.++.++ ++.+++.|+++++|++.+ ++....+.+ .|.++.|+.++.+++..++..|+++|+
T Consensus       613 d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa  690 (810)
T 3now_A          613 ESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA  690 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            88888899999999999999998 999999999999999876 445566665 789999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHH-cCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHH
Q 037562          561 NATKFGTHEQIKHLVR-EGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIE  639 (670)
Q Consensus       561 ~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~  639 (670)
                      +++.. ++...+.+++ .|+++.|++++.+++.++++.|++++.++...+..             ....+.+.|+++.|.
T Consensus       691 nLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~  756 (810)
T 3now_A          691 IITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE-------------IAKKLFETDIMELLS  756 (810)
T ss_dssp             HHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHH-------------HHHHHHTSTHHHHHT
T ss_pred             HHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHH-------------HHHHHHHCCCHHHHH
Confidence            99985 5778888888 89999999999999999999999999999864321             367888999999999


Q ss_pred             HhhcC---CCHHHHHHHHHHHHHhcCCcc
Q 037562          640 NLQSH---DDNGISEKAVEILETYWSSRV  665 (670)
Q Consensus       640 ~L~~~---~~~~v~~~a~~~l~~~~~~~~  665 (670)
                      .+...   .+.++.+.|.++|+.+.....
T Consensus       757 ~LL~~~d~~~~~i~e~Al~aL~~ll~~g~  785 (810)
T 3now_A          757 GLGQLPDDTRAKAREVATQCLAAAERYRI  785 (810)
T ss_dssp             TSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence            98644   478999999999988765443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=316.07  Aligned_cols=427  Identities=17%  Similarity=0.178  Sum_probs=359.2

Q ss_pred             hhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC
Q 037562          203 TTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGV  282 (670)
Q Consensus       203 ~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~  282 (670)
                      ..++..+...+.++..+...+.....        .+.++.|++.++++++.++..|+++|.+++... ......+++.|+
T Consensus        71 ~~~~~~A~~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~  141 (644)
T 2z6h_A           71 VETARCTAGTLHNLSHHREGLLAIFK--------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGG  141 (644)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHT--------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHhcChhhHHHHHH--------cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCC
Confidence            45677777777777666543322222        267999999999999999999999999998874 455677788999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP-SVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      ++.|++++++++ ++++..++.+|.+++.++++.+..+.+.|+++.|+.++++. ...++..++.+|.+++. .+..+..
T Consensus       142 i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~  219 (644)
T 2z6h_A          142 LQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPA  219 (644)
T ss_dssp             HHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHH
T ss_pred             hHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHH
Confidence            999999999988 89999999999999987899999999999999999999875 46788899999999995 4567889


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND  441 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  441 (670)
                      +.+.|+++.++.++ .+.+..+++.++++|.+++...+..  ....++++.|++++.+++++++..++++|++++...+.
T Consensus       220 l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~  296 (644)
T 2z6h_A          220 IVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  296 (644)
T ss_dssp             HHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999 5668899999999999999875332  33468999999999999999999999999999988878


Q ss_pred             HHHHHHHcCCHHHHHHhcCCCC--ccchhHHHHHHHHhhcCCch---hhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562          442 KVQAVIEAGVYPRLVELLGHSS--SSVLTPALRTIRNIVKGDDF---QTQCIINCGALPYFLDMLVHNHEESIKKEVSWI  516 (670)
Q Consensus       442 ~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~---~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~  516 (670)
                      ..+.+.+.|+++.|+.++.+.+  +.++..|+++|++++...+.   ....+++.|+++.|+.+|.+..++.+++.|+|+
T Consensus       297 ~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~  376 (644)
T 2z6h_A          297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  376 (644)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHH
Confidence            8888999999999999998732  68999999999999975442   233477889999999999987347999999999


Q ss_pred             HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC----------------------hhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037562          517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTE----------------------FDTKKEAAWAISNATKFGTHEQIKHL  574 (670)
Q Consensus       517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l  574 (670)
                      ++|++.+.. ....+.+.|+++.|++++.+++                      .+++..|+.+|.+++.  ++..+..+
T Consensus       377 L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l  453 (644)
T 2z6h_A          377 IRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVI  453 (644)
T ss_dssp             HHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHH
T ss_pred             HHHHccCHH-HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHH
Confidence            999987644 4578889999999999998643                      4566778888888887  45777788


Q ss_pred             HHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 037562          575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV  654 (670)
Q Consensus       575 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~  654 (670)
                      .+.|+++.|++++.+.+++++..+.++|.++....              ..+..+.+.|+++.|..++.+++++++..|.
T Consensus       454 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~--------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~  519 (644)
T 2z6h_A          454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAA  519 (644)
T ss_dssp             HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH--------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred             HhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH--------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHH
Confidence            89999999999999999999999999999987431              2477899999999999999999999977655


Q ss_pred             HHHHHh
Q 037562          655 EILETY  660 (670)
Q Consensus       655 ~~l~~~  660 (670)
                      ++|..+
T Consensus       520 ~aL~~l  525 (644)
T 2z6h_A          520 AVLFRM  525 (644)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544444

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.3e-34  Score=310.26  Aligned_cols=396  Identities=24%  Similarity=0.349  Sum_probs=341.2

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhh--hhccHHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQS--KLEILPAMVDGVWSDD-NSLQLEATTLFINLLSFDRSPPIDEVI  278 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~  278 (670)
                      +..++..+...+++++......        +.+.  ..+.+|.|++.+.+++ +.++..|+++|.+++.+. .+....++
T Consensus        87 ~~~~~~~A~~~L~~l~s~~~~~--------~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~  157 (528)
T 4b8j_A           87 DNNLQLEATTQFRKLLSIERSP--------PIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVI  157 (528)
T ss_dssp             CHHHHHHHHHHHHHHHTCSSSC--------CHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCc--------hHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence            3456667777777776543211        1111  1267999999999876 999999999999998864 56677888


Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCch
Q 037562          279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-ASPSVDVRKQTVWALGNVAGDSPR  357 (670)
Q Consensus       279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~  357 (670)
                      +.|+++.|+.++.+++ +.++..|+++|++++..++..+..+.+.|+++.|+.++ .+.++.++..|+++|++++...+.
T Consensus       158 ~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~  236 (528)
T 4b8j_A          158 DHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ  236 (528)
T ss_dssp             HTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred             hCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999988 89999999999999987888999999999999999999 668999999999999999987544


Q ss_pred             hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562          358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS  436 (670)
Q Consensus       358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~  436 (670)
                      .. .....++++.|+.++ .+.++.++..++++|.+++...+.. ......++++.|+.++.++++.++..++++|++++
T Consensus       237 ~~-~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~  314 (528)
T 4b8j_A          237 PS-FEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV  314 (528)
T ss_dssp             CC-HHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             Cc-HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence            33 334578899999999 7788999999999999999775332 23334689999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHH
Q 037562          437 DGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSW  515 (670)
Q Consensus       437 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~  515 (670)
                      ...+...+.+++.|+++.|+.+|.++ ++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|
T Consensus       315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~  393 (528)
T 4b8j_A          315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAW  393 (528)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHH
Confidence            98888888899999999999999998 889999999999999998888888888999999999999999 9999999999


Q ss_pred             HHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----------HHHHHHHHcCCcHHHH
Q 037562          516 IISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH----------EQIKHLVREGCVKPLC  584 (670)
Q Consensus       516 ~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~  584 (670)
                      +|+|++.. +++....+++.|+++.|+.++.+++++++..|+++|.+++..+..          .....+.+.|+++.+.
T Consensus       394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  473 (528)
T 4b8j_A          394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIE  473 (528)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHH
Confidence            99999885 788899999999999999999999999999999999999875322          2567778899999999


Q ss_pred             hhccCCChHHHHHHHHHHHHHHHhhh
Q 037562          585 DLLLCADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       585 ~ll~~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      .+.++.+++++..|..++.+++...+
T Consensus       474 ~L~~~~~~~v~~~a~~il~~~~~~e~  499 (528)
T 4b8j_A          474 NLQSHDNNEIYEKAVKILEAYWMDEE  499 (528)
T ss_dssp             HGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            99999999999999999999886543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3.2e-34  Score=308.97  Aligned_cols=397  Identities=23%  Similarity=0.318  Sum_probs=340.6

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhh--hhccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQS--KLEILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEVI  278 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~  278 (670)
                      +..++..+...+++++......        +++.  ..+.+|.|++.+.++ ++.++..|+++|.+++... .+....++
T Consensus       100 ~~~~~~~A~~~L~~ll~~~~~~--------~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~  170 (530)
T 1wa5_B          100 DMQEQLSATVKFRQILSREHRP--------PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVV  170 (530)
T ss_dssp             SHHHHHHHHHHHHHHTCCSSSC--------SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence            3457777777777776543111        0111  126799999999986 8999999999999998764 45667788


Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 037562          279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC  358 (670)
Q Consensus       279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  358 (670)
                      +.|+++.|+.++.+++ +.++..|+++|++++..++..+..+...|+++.|+.++.++++.++..|+++|++++.+....
T Consensus       171 ~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~  249 (530)
T 1wa5_B          171 DADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ  249 (530)
T ss_dssp             HTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred             HCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC
Confidence            8999999999999888 899999999999999977899999999999999999999999999999999999999765222


Q ss_pred             HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562          359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD  437 (670)
Q Consensus       359 ~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~  437 (670)
                      .......++++.|+.++ .+.++.++..++++|.+++...+.. ......++++.|+.++.++++.++..++++|++++.
T Consensus       250 ~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          250 PDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence            33445678899999999 6778899999999999999875322 222335899999999999999999999999999998


Q ss_pred             CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHH
Q 037562          438 GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWII  517 (670)
Q Consensus       438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L  517 (670)
                      ..+...+.+.+.|+++.++.+|.++++.++..|+++|++++.+.+.....+++.|+++.|+.++.++ ++.++..|+|+|
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL  407 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAI  407 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHH
Confidence            8888888889999999999999999999999999999999998887788888999999999999988 999999999999


Q ss_pred             HHhhcC-CH--HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----------HHHHHHHHcCCcHHHH
Q 037562          518 SNITCG-NR--EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH----------EQIKHLVREGCVKPLC  584 (670)
Q Consensus       518 ~~l~~~-~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~  584 (670)
                      ++++.. .+  +....+++.|+++.|+.++.+++++++..|+++|.+++..+..          .....+.+.|+++.|.
T Consensus       408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~  487 (530)
T 1wa5_B          408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF  487 (530)
T ss_dssp             HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHH
Confidence            999874 44  7788889999999999999999999999999999999875321          2456678899999999


Q ss_pred             hhccCCChHHHHHHHHHHHHHHHhhh
Q 037562          585 DLLLCADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       585 ~ll~~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      .++.+++++++..+..++.+++...+
T Consensus       488 ~L~~~~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          488 NCQQNENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             GGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            99999999999999999999986544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.4e-35  Score=309.21  Aligned_cols=363  Identities=17%  Similarity=0.188  Sum_probs=302.5

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .+|.+++.|++++++++..|+++|.+++..+ ......+++.|++|.|+++|++++ ++++..|+++|.+++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            4799999999999999999999999997653 444558999999999999999988 89999999999999997799999


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------c-------CChh
Q 037562          319 VVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------N-------ANLS  382 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~--------~-------~~~~  382 (670)
                      .+++.|+++.|+++|+ ++++++++.|+|+|+|++.+ +..+..+.+ |++++|+.++..        .       .++.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 78999999999999999988 668888888 999999999931        1       3567


Q ss_pred             HHHHHHHHHHhhhcCCCCCChhhhh-hhHHHHHHhhcc------CChhHHHHHHHHHHHhccCC----------------
Q 037562          383 MLRTATWTLFNFCRGKPQPPFNQVR-PALPVLAQLIRS------NDEEVLTDACWALSYLSDGT----------------  439 (670)
Q Consensus       383 ~~~~a~~~L~~l~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~al~~L~~l~~~~----------------  439 (670)
                      +++.|+|+|.|++..+......... |+++.|+.++++      .+..++..++.++.+++...                
T Consensus       159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~  238 (457)
T 1xm9_A          159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence            8889999999999873222222223 999999999985      46678889999999987321                


Q ss_pred             ----------------------------------hHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCchh
Q 037562          440 ----------------------------------NDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDDFQ  484 (670)
Q Consensus       440 ----------------------------------~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~  484 (670)
                                                        +...+.+.+.|+++.++.+|.+. ++.+++.|+++|+|++.++...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                              01112234456788888888764 5789999999999999876442


Q ss_pred             h----HHHH-hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCCh------hHHH
Q 037562          485 T----QCII-NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEF------DTKK  553 (670)
Q Consensus       485 ~----~~l~-~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~~  553 (670)
                      .    +.++ +.|+++.|+++|.++ +.++++.|+|+|+|++.+ ++ ...++..++++.|+++|..+++      ++..
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            2    3334 689999999999999 999999999999999874 33 4455667899999999997643      6888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHhh
Q 037562          554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~  609 (670)
                      .++++|.++... +++....+.+.|+++.|++++.++ ++++++.|.++|.+++.+.
T Consensus       396 ~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            999999999876 567888889999999999999999 9999999999999988543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=4.6e-34  Score=299.32  Aligned_cols=370  Identities=18%  Similarity=0.219  Sum_probs=306.3

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Cch
Q 037562          279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD-SPR  357 (670)
Q Consensus       279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~  357 (670)
                      ..+.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+|+.|+.+|+++++.+++.|+++|.||+.+ +++
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4568999999999998 89999999999999988999999999999999999999999999999999999999985 688


Q ss_pred             hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc------------------c
Q 037562          358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR------------------S  419 (670)
Q Consensus       358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------------------~  419 (670)
                      .+..+.+.|++++|+.+|....+..+++.++++|++|+..+.. ...+..+++|.|++++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~-k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI-KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG-HHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999996667889999999999999986533 33344678999999871                  2


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHc-CCHHHHHHhcCC------CCccchhHHHHHHHHhhcCCc----------
Q 037562          420 NDEEVLTDACWALSYLSDGTNDKVQAVIEA-GVYPRLVELLGH------SSSSVLTPALRTIRNIVKGDD----------  482 (670)
Q Consensus       420 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~----------  482 (670)
                      .++.++..+.++|.|++...++..+.+.+. |+++.|+.++++      .+...++.|+++|.||+....          
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            367999999999999998877767777775 667799999874      456788999999999986521          


Q ss_pred             ---------------hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH---HH-HHHHHhcCChHHHHHH
Q 037562          483 ---------------FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR---EQ-IQAVIDSGLIGPIVNL  543 (670)
Q Consensus       483 ---------------~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~---~~-~~~l~~~~~i~~L~~l  543 (670)
                                     .....+.+.++++.|+.++....++.+++.|+|+|.|++.+..   .. ...+.+.++++.|+++
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                           1122223345567788999754489999999999999988642   22 2344467889999999


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC--------ChHHHHHHHHHHHHHHHhhhhhhcc
Q 037562          544 LQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA--------DPKIVTVCLEGLENILKVGVAEMNT  615 (670)
Q Consensus       544 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~~l~~l~~~~~~~~~~  615 (670)
                      |.+++.+++..|+++|.|++....  .. ..+..|+++.|+++|.+.        +.+++..++++|.+++.....    
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~--~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~----  436 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDAR--NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE----  436 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCS--CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChh--HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence            999999999999999999998643  22 345789999999999776        467889999999999854332    


Q ss_pred             CCCCCCccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCccc
Q 037562          616 GTAVGDFNQYAQLVEEAEGLEKIENLQSHD--DNGISEKAVEILETYWSSRVI  666 (670)
Q Consensus       616 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~~l~~~~~~~~~  666 (670)
                               ..+.+.+.|+++.|.+|..+.  ++.+++.|.++|..+|.+.+.
T Consensus       437 ---------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el  480 (584)
T 3l6x_A          437 ---------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL  480 (584)
T ss_dssp             ---------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH
T ss_pred             ---------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH
Confidence                     356778999999999998775  889999999999999987654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=3.4e-33  Score=311.80  Aligned_cols=433  Identities=17%  Similarity=0.182  Sum_probs=362.9

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG  281 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g  281 (670)
                      +..++..+...+.++...........        ..+.++.|++.++++++.++..|+++|.+++... ......+.+.|
T Consensus       206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~--------~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g  276 (780)
T 2z6g_A          206 DVETARCTSGTLHNLSHHREGLLAIF--------KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAG  276 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHH--------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhCCchhHHHHH--------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcC
Confidence            44566666677776665543211111        1277999999999999999999999999998874 45566677899


Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS-VDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      +++.|++++.+++ .+++..|+.+|.+++..+++.+..+.+.|+++.|+.++++.+ ...+..++.+|.+++.. +..+.
T Consensus       277 ~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~  354 (780)
T 2z6g_A          277 GLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKP  354 (780)
T ss_dssp             HHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHH
T ss_pred             CHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHH
Confidence            9999999999988 899999999999999888999999999999999999999754 55667889999999964 55688


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                      .+.+.|+++.|+.++ .+.+..+++.++++|.+++...+..  ....++++.|+.++.+.++.++..++++|++++...+
T Consensus       355 ~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~  431 (780)
T 2z6g_A          355 AIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  431 (780)
T ss_dssp             HHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            888999999999999 5668899999999999999876332  2346899999999999999999999999999999888


Q ss_pred             HHHHHHHHcCCHHHHHHhcCC-CCc-cchhHHHHHHHHhhcCCchh---hHHHHhCCChHHHHHhhccCCchhHHHHHHH
Q 037562          441 DKVQAVIEAGVYPRLVELLGH-SSS-SVLTPALRTIRNIVKGDDFQ---TQCIINCGALPYFLDMLVHNHEESIKKEVSW  515 (670)
Q Consensus       441 ~~~~~~~~~~~i~~L~~lL~~-~~~-~v~~~a~~~L~~l~~~~~~~---~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~  515 (670)
                      .....+.+.|+++.|+.+|.+ ++. .++..|+++|++++...++.   ...+...++++.|+.++.+..++.++..|+|
T Consensus       432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~  511 (780)
T 2z6g_A          432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG  511 (780)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence            888889999999999999986 333 89999999999998755432   3467788999999999998834599999999


Q ss_pred             HHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC----------------------hhHHHHHHHHHHHhcCCCCHHHHHH
Q 037562          516 IISNITCGNREQIQAVIDSGLIGPIVNLLQNTE----------------------FDTKKEAAWAISNATKFGTHEQIKH  573 (670)
Q Consensus       516 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~  573 (670)
                      +|+|++.+ +.....+.+.|+++.|++++.+++                      .+++..++.+|.+++.  ++.....
T Consensus       512 aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~  588 (780)
T 2z6g_A          512 LIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIV  588 (780)
T ss_dssp             HHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHH
T ss_pred             HHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHH
Confidence            99999875 455578889999999999997543                      3467788888999986  5677788


Q ss_pred             HHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562          574 LVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA  653 (670)
Q Consensus       574 l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a  653 (670)
                      +.+.|+++.|+.++.+.++.++..+..+|.++....              ..+..+.+.|+++.|..++.+++++|+..|
T Consensus       589 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~--------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A  654 (780)
T 2z6g_A          589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYA  654 (780)
T ss_dssp             HHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH--------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            889999999999999999999999999999987331              247789999999999999999999999998


Q ss_pred             HHHHHHhcCCcc
Q 037562          654 VEILETYWSSRV  665 (670)
Q Consensus       654 ~~~l~~~~~~~~  665 (670)
                      .++|.++..+..
T Consensus       655 ~~aL~~l~~~~~  666 (780)
T 2z6g_A          655 AAVLFRMSEDKP  666 (780)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCh
Confidence            888888765443

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=3.4e-34  Score=303.20  Aligned_cols=395  Identities=23%  Similarity=0.318  Sum_probs=337.9

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhh---hccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHH
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSK---LEILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEV  277 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~  277 (670)
                      +..++..+...++.++......        +.+..   .+.++.+++.++++ ++.++..|+++|.+++... .+....+
T Consensus        33 ~~~~r~~A~~~L~~l~~~~~~~--------~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~  103 (450)
T 2jdq_A           33 SPEQQLSATQKFRKLLSKEPNP--------PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIV  103 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHSSSSC--------CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCC--------cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence            4457778888888776532110        11111   15699999999987 8999999999999998764 4556677


Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-
Q 037562          278 IQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDS-  355 (670)
Q Consensus       278 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~-  355 (670)
                      ++.|+++.|++++++++ ++++..|+++|++++..++..+..+++.|+++.++.++.+ ++..++..|+++|++++.+. 
T Consensus       104 ~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~  182 (450)
T 2jdq_A          104 IQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS  182 (450)
T ss_dssp             HHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            88999999999999988 8999999999999999888899999999999999999995 78999999999999999765 


Q ss_pred             chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC-CChhhhhhhHHHHHHhhccCChhHHHHHHHHHHH
Q 037562          356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ-PPFNQVRPALPVLAQLIRSNDEEVLTDACWALSY  434 (670)
Q Consensus       356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~  434 (670)
                      +..+..+ ..++++.++.++ .+.++.++..++|+|.+++...+. .......++++.++.++.++++.++..++++|++
T Consensus       183 ~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          183 PPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            4332232 267899999999 677889999999999999986522 2233346899999999999999999999999999


Q ss_pred             hccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHH
Q 037562          435 LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS  514 (670)
Q Consensus       435 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~  514 (670)
                      ++...+...+.+.+.|+++.++.++.++++.++..|+++|++++.+++...+.+++.|+++.|+.++.++ ++.+|..|+
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~  339 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAA  339 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHH
Confidence            9998888778888889999999999999999999999999999998888788888899999999999998 999999999


Q ss_pred             HHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----------HHHHHHHHcCCcHHH
Q 037562          515 WIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH----------EQIKHLVREGCVKPL  583 (670)
Q Consensus       515 ~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L  583 (670)
                      |++++++.+ +++..+.+++.|+++.|++++.+++++++..|+++|.+++..+..          .....+.+.|+++.|
T Consensus       340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l  419 (450)
T 2jdq_A          340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI  419 (450)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHH
Confidence            999999875 678888888999999999999999999999999999999875322          234677888999999


Q ss_pred             HhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          584 CDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       584 ~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ..++++++++++..+..++.+++...
T Consensus       420 ~~l~~~~~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          420 EFLQSHENQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            99999999999999999999998543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.7e-34  Score=301.15  Aligned_cols=364  Identities=18%  Similarity=0.186  Sum_probs=302.1

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-Chhh
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG-TSEN  316 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~  316 (670)
                      +.++.++++|.+++++++..|+++|.+++..+ .+....+++.|++|.|+++|.+++ ++++..|+++|.+++.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            46999999999999999999999999998754 677888999999999999999998 89999999999999985 6999


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-----------------cc
Q 037562          317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-----------------EN  378 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~-----------------~~  378 (670)
                      +..+++.|+|+.|+.+|++ .+..+++.|+++|+||+.. +..+..+.+ +++++|++++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 6889999999999999974 567777775 56999999872                 12


Q ss_pred             CChhHHHHHHHHHHhhhcCCCC-CChhhh-hhhHHHHHHhhcc------CChhHHHHHHHHHHHhccCChHH--------
Q 037562          379 ANLSMLRTATWTLFNFCRGKPQ-PPFNQV-RPALPVLAQLIRS------NDEEVLTDACWALSYLSDGTNDK--------  442 (670)
Q Consensus       379 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~~~--------  442 (670)
                      .++.++.+|+++|.||+...+. ...... .|+++.|+.++++      .+...++.++++|+||+......        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3579999999999999987644 222332 5778899999874      46789999999999998652111        


Q ss_pred             -----------------HHHHHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhhcCCchh----hHHHHhCCChHHHHHh
Q 037562          443 -----------------VQAVIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIVKGDDFQ----TQCIINCGALPYFLDM  500 (670)
Q Consensus       443 -----------------~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~----~~~l~~~~~~~~L~~~  500 (670)
                                       .+.+.+.++++.++.+|. +.++.+++.|+++|.|++.+....    ...+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             011222345677888885 467889999999999999865322    2234467899999999


Q ss_pred             hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--------ChhHHHHHHHHHHHhcCCCCHHHHH
Q 037562          501 LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--------EFDTKKEAAWAISNATKFGTHEQIK  572 (670)
Q Consensus       501 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~  572 (670)
                      |.++ +..+++.|+|+|+|++.+.. .. ..+..|+++.|+.+|.++        +.+++..|+++|.|++.. ++++.+
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9999 99999999999999988543 23 345789999999999865        357899999999999876 789999


Q ss_pred             HHHHcCCcHHHHhhccCC--ChHHHHHHHHHHHHHHHhh
Q 037562          573 HLVREGCVKPLCDLLLCA--DPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       573 ~l~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~  609 (670)
                      .+.+.|+++.|++++.+.  .+.+++.|.++|.++..+.
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence            999999999999999876  8899999999999998643

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.6e-33  Score=302.88  Aligned_cols=432  Identities=17%  Similarity=0.164  Sum_probs=355.9

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQS  280 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  280 (670)
                      +..++..+...+.++..+...+.....       ..+.++.+++.+.+ ++++++..|+.+|.+++..  .+....+.+.
T Consensus        30 ~~~v~~~A~~~L~~l~~~~~~~~~~~~-------~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~  100 (529)
T 1jdh_A           30 DQVVVNKAAVMVHQLSKKEASRHAIMR-------SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKS  100 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHT-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHcCCccHHHHHh-------CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHc
Confidence            456788888888888766543211111       12568999999974 5899999999999999765  4577888999


Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      |+++.|++++++++ +.++..|+++|.+++..++..+..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+.
T Consensus       101 g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~  179 (529)
T 1jdh_A          101 GGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             THHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999998 89999999999999987678888888999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                      .+.+.|+++.++.++....+...+..++.+|.+++............|+++.++.++.++++.++..+++++.+++...+
T Consensus       180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  259 (529)
T 1jdh_A          180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence            99999999999999977666777788999999999865444444557999999999999999999999999999997644


Q ss_pred             HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHH
Q 037562          441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISN  519 (670)
Q Consensus       441 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~  519 (670)
                      ...   ...++++.++.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.+.. ++.++..|+++|+|
T Consensus       260 ~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n  336 (529)
T 1jdh_A          260 KQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  336 (529)
T ss_dssp             TCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            221   12378899999999999999999999999999988778888999999999999998631 47999999999999


Q ss_pred             hhcCCHH---HHHHHHhcCChHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHH
Q 037562          520 ITCGNRE---QIQAVIDSGLIGPIVNLLQNTE-FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIV  595 (670)
Q Consensus       520 l~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  595 (670)
                      ++..+++   ....+.+.|+++.|++++.+++ ..++..|+++|.+++..  +.....+.+.|+++.|++++++.+++++
T Consensus       337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~  414 (529)
T 1jdh_A          337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQ  414 (529)
T ss_dssp             HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHH
Confidence            9875433   4567888999999999999876 59999999999999984  3445788899999999999988888888


Q ss_pred             HHHHHHHHH----------------------HHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562          596 TVCLEGLEN----------------------ILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA  653 (670)
Q Consensus       596 ~~a~~~l~~----------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a  653 (670)
                      ..+.|++.+                      +...              ...+..+.+.|+++.|..+..+.+++++..|
T Consensus       415 ~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~--------------~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a  480 (529)
T 1jdh_A          415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVA  480 (529)
T ss_dssp             -----------CBTTBCHHHHHHHHHHHHHHHTTS--------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC--------------chHHHHHhccCCccHHHHHHcCCchHHHHHH
Confidence            776666654                      2211              1134567899999999999999999999999


Q ss_pred             HHHHHHhcC
Q 037562          654 VEILETYWS  662 (670)
Q Consensus       654 ~~~l~~~~~  662 (670)
                      .+++.++-.
T Consensus       481 ~~~l~~l~~  489 (529)
T 1jdh_A          481 AGVLCELAQ  489 (529)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999888754

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=289.40  Aligned_cols=345  Identities=17%  Similarity=0.165  Sum_probs=286.1

Q ss_pred             HhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCC------------ChHHHHHHHHHHHHHhcCCCCCcHHH
Q 037562          209 YLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSD------------DNSLQLEATTLFINLLSFDRSPPIDE  276 (670)
Q Consensus       209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~~  276 (670)
                      ..+++..+....+.+....++        |.+|.|+++++..            ++++++.|+|+|.|++.+. ++..+.
T Consensus        49 ~~~~ll~~~~~~~~~~~~~~~--------g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~  119 (458)
T 3nmz_A           49 MSRTLLAMSSSQDSCISMRQS--------GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRG  119 (458)
T ss_dssp             HHHHHHHHHSSTTHHHHHHHH--------TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHC--------CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHH
Confidence            445555555555543333333        8899999999853            3699999999999999987 777777


Q ss_pred             HHHcCCH----------HHHHHhhcCCC-CHH-----HHH-------HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh
Q 037562          277 VIQSGVV----------PRFVEFLMRQD-YPQ-----LQF-------KAAWALTNIASGTSENTKVVIDHGAVPIFVKLL  333 (670)
Q Consensus       277 ~~~~g~l----------~~L~~ll~~~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL  333 (670)
                      ..+.+++          +.+++++.+.. ..+     +++       +|+++|.|++. ++++|+.+++.|++++|+.+|
T Consensus       120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL  198 (458)
T 3nmz_A          120 RREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELL  198 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHH
Confidence            7788887          66777776542 112     555       99999999987 699999999999999999999


Q ss_pred             CC-----------CCHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC--C
Q 037562          334 AS-----------PSVDVRKQTVWALGNVAGDSPRCRDLVLS-QGALIPLLAELNENANLSMLRTATWTLFNFCRGK--P  399 (670)
Q Consensus       334 ~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~--~  399 (670)
                      ..           .++.++..|+|+|.|++.+++..+..+.. .|++++|+.+| .+.+++++..|+|+|.|++...  .
T Consensus       199 ~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~  277 (458)
T 3nmz_A          199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVN  277 (458)
T ss_dssp             HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHH
T ss_pred             hhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHH
Confidence            41           34778999999999999888777777754 45599999999 6788999999999999999852  2


Q ss_pred             CCChhhhhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHH-HcCCHHHHHHhcCCCCcc----chhHHHHH
Q 037562          400 QPPFNQVRPALPVLAQLI-RSNDEEVLTDACWALSYLSDGTNDKVQAVI-EAGVYPRLVELLGHSSSS----VLTPALRT  473 (670)
Q Consensus       400 ~~~~~~~~~~i~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~----v~~~a~~~  473 (670)
                      ++......|++|.|+.+| .+.++.++..++.+|+|++...++....+. ..|+++.|+.+|.+++..    ++..|+++
T Consensus       278 ~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~a  357 (458)
T 3nmz_A          278 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI  357 (458)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence            333444579999999975 567899999999999999984544444555 789999999999987653    89999999


Q ss_pred             HHHhhc---CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChh
Q 037562          474 IRNIVK---GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFD  550 (670)
Q Consensus       474 L~~l~~---~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  550 (670)
                      |.|++.   .+++..+.+.+.|+++.|+.+|.++ +..++++|+|+|+|++.++++++..+++.|+++.|++++.+++..
T Consensus       358 L~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~  436 (458)
T 3nmz_A          358 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM  436 (458)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHH
T ss_pred             HHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence            999997   6778888889999999999999998 999999999999999988899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 037562          551 TKKEAAWAISNATKF  565 (670)
Q Consensus       551 v~~~a~~aL~~l~~~  565 (670)
                      +++.|+++|.|++..
T Consensus       437 v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          437 IAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999986

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=303.07  Aligned_cols=433  Identities=17%  Similarity=0.173  Sum_probs=362.4

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQS  280 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  280 (670)
                      +..++..+...+.++..+...+.....       ..+.++.+++.+.+ ++++++..|+.+|.+++..  .+....+.+.
T Consensus        27 ~~~vr~~A~~~L~~La~~~~~~~~i~~-------~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~   97 (644)
T 2z6h_A           27 DQVVVNKAAVMVHQLSKKEASRHAIMR-------SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKS   97 (644)
T ss_dssp             CHHHHHHHHHHHHHHHTSTTHHHHHTT-------CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHCCChhHHHHHh-------ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHc
Confidence            557888888888888877653322211       12568999999985 4899999999999998765  4577888899


Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      |+++.|++++++++ +.++..|+++|.+++...+..+..+.+.|+++.|+.+++++++.++..++.+|.+++..+++.+.
T Consensus        98 g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~  176 (644)
T 2z6h_A           98 GGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  176 (644)
T ss_dssp             THHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence            99999999999998 89999999999999986678888888999999999999999999999999999999988888899


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                      .+.+.|+++.|+.++.......++..++.+|.+++............++++.++.++.+++..++..++++|.+++....
T Consensus       177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  256 (644)
T 2z6h_A          177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  256 (644)
T ss_dssp             HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred             HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence            99999999999999976666788889999999999865555555557899999999999999999999999999996543


Q ss_pred             HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHH
Q 037562          441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISN  519 (670)
Q Consensus       441 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~  519 (670)
                      ..   ....++++.|+.++.++++.++..|+++|++++.+.+.....+.+.|+++.|+.++.+.. .+.++..|+++|+|
T Consensus       257 ~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n  333 (644)
T 2z6h_A          257 KQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  333 (644)
T ss_dssp             TC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence            21   111268899999999999999999999999999987777888889999999999998742 37999999999999


Q ss_pred             hhcCCH---HHHHHHHhcCChHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC----
Q 037562          520 ITCGNR---EQIQAVIDSGLIGPIVNLLQNTE-FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD----  591 (670)
Q Consensus       520 l~~~~~---~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----  591 (670)
                      ++...+   .....+.+.|+++.|++++.+++ ..++..|+++|.|++..  +.....+.+.|+++.|++++.+.+    
T Consensus       334 L~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr  411 (644)
T 2z6h_A          334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQ  411 (644)
T ss_dssp             HTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhh
Confidence            987433   23344778899999999999765 69999999999999985  344588889999999999997644    


Q ss_pred             ------------------hHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562          592 ------------------PKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA  653 (670)
Q Consensus       592 ------------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a  653 (670)
                                        .+++..++.+|.+++....              .+..+.+.|+++.|..+..+.+++++..|
T Consensus       412 ~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a  477 (644)
T 2z6h_A          412 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVA  477 (644)
T ss_dssp             TC----------CCSSCHHHHHHHHHHHHHHHTTSHH--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred             hHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHH
Confidence                              3456667777777664331              25578899999999999999999999999


Q ss_pred             HHHHHHhcCC
Q 037562          654 VEILETYWSS  663 (670)
Q Consensus       654 ~~~l~~~~~~  663 (670)
                      .+++.++..+
T Consensus       478 ~~aL~~l~~~  487 (644)
T 2z6h_A          478 AGVLCELAQD  487 (644)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHcC
Confidence            9998887654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=5.2e-32  Score=302.23  Aligned_cols=433  Identities=17%  Similarity=0.183  Sum_probs=355.4

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQS  280 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  280 (670)
                      +..+|..+...+.++..+.........       ..+.++.|++.|.+ ++++++..|+.+|.+++..  .+....+.+.
T Consensus       163 d~~vr~~A~~~L~~L~~~~~~~~~i~~-------~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~  233 (780)
T 2z6g_A          163 DQVVVNKAAVMVHQLSKKEASRHAIMR-------SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKS  233 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHTT-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhCCChhHHHHHh-------ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHc
Confidence            345666666666666654432211111       12568999999974 5899999999999998765  4557788899


Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      |+++.|+++|++++ +.++..|+++|.+++...+..+..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+.
T Consensus       234 g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~  312 (780)
T 2z6g_A          234 GGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  312 (780)
T ss_dssp             THHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence            99999999999998 89999999999999987778888888999999999999999999999999999999988888899


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                      .+.+.|+++.|+.++........+..++.+|.+++............++++.|+.++.+.+..++..++++|.+++....
T Consensus       313 ~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~  392 (780)
T 2z6g_A          313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  392 (780)
T ss_dssp             HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence            99999999999999966666667778999999999765444444557899999999999999999999999999996653


Q ss_pred             HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCc-hhHHHHHHHHHHH
Q 037562          441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHE-ESIKKEVSWIISN  519 (670)
Q Consensus       441 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~-~~v~~~a~~~L~~  519 (670)
                      ..   ....++++.|+.++.+.++.++..|+++|++++.+.+.....+++.|+++.|+.++.+..+ ..++..|+++|+|
T Consensus       393 ~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~n  469 (780)
T 2z6g_A          393 KQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  469 (780)
T ss_dssp             TC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            21   1123688999999999999999999999999999887888888899999999999986423 4899999999999


Q ss_pred             hhcCCHH---HHHHHHhcCChHHHHHHhhcCCh-hHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh---
Q 037562          520 ITCGNRE---QIQAVIDSGLIGPIVNLLQNTEF-DTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP---  592 (670)
Q Consensus       520 l~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~---  592 (670)
                      ++...++   ....+.+.++++.|++++.+++. .++..|+++|+|++.  .+.....+.+.|+++.|++++.+.+.   
T Consensus       470 L~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~  547 (780)
T 2z6g_A          470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQ  547 (780)
T ss_dssp             TTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHH
Confidence            9875433   24467788999999999997775 999999999999998  45566888899999999999976543   


Q ss_pred             -------------------HHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562          593 -------------------KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA  653 (670)
Q Consensus       593 -------------------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a  653 (670)
                                         +++..++.+|.++....              ..+..+.+.|+++.|..+..+.+++++..|
T Consensus       548 ~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a  613 (780)
T 2z6g_A          548 RRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVA  613 (780)
T ss_dssp             HTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence                               45566777777765321              134568899999999999999999999999


Q ss_pred             HHHHHHhcCC
Q 037562          654 VEILETYWSS  663 (670)
Q Consensus       654 ~~~l~~~~~~  663 (670)
                      ..++..+..+
T Consensus       614 ~~aL~~L~~~  623 (780)
T 2z6g_A          614 AGVLCELAQD  623 (780)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHhcC
Confidence            9988877543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=6.1e-29  Score=248.14  Aligned_cols=273  Identities=17%  Similarity=0.167  Sum_probs=238.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC----------CCHHHHHHHHHHHHHHcCCChhhHHHH
Q 037562          251 DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ----------DYPQLQFKAAWALTNIASGTSENTKVV  320 (670)
Q Consensus       251 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~i  320 (670)
                      +...+.+|+++|.+++.+  .+.++.+++.|+++.|+.+|..+          .++.++..|+++|.+++.+++..+..+
T Consensus        45 ~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            345667899999999776  67889999999999999999521          126899999999999999777788877


Q ss_pred             HhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          321 IDH-GAVPIFVKLLASPSVDVRKQTVWALGNVAGD-SPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       321 ~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                      ... |+||.|+.+|+++++++++.|+++|.|++.. ++..+..+.+.|++++|+.+|..+.+..+++.|+++|+|++...
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            654 5599999999999999999999999999975 56788999999999999998767778899999999999999854


Q ss_pred             -CCCChhh-hhhhHHHHHHhhccCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHcCCHHHHHHhcCCCCccchhH
Q 037562          399 -PQPPFNQ-VRPALPVLAQLIRSNDE----EVLTDACWALSYLSD---GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP  469 (670)
Q Consensus       399 -~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~  469 (670)
                       .+..... ..|++|.|+.++.++++    +++..++++|+|++.   ..++..+.+.+.|+++.|+.+|.+++..+++.
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence             3333333 47999999999987654    599999999999996   56778888999999999999999999999999


Q ss_pred             HHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH
Q 037562          470 ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE  526 (670)
Q Consensus       470 a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~  526 (670)
                      |+++|+|++.++++....+.+.|+++.|+.++.++ ++.+++.|+|+|.|++...+.
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHH
Confidence            99999999988888888899999999999999999 999999999999999986554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=2.8e-28  Score=243.29  Aligned_cols=275  Identities=18%  Similarity=0.179  Sum_probs=237.5

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc----------cCChhHHHHHHHHHHhhhcCCCCCChh
Q 037562          335 SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE----------NANLSMLRTATWTLFNFCRGKPQPPFN  404 (670)
Q Consensus       335 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~  404 (670)
                      .+....+..|+++|+|++.+ +++|+.+.+.|++++|+.++..          ..++.+++.|+|+|.|++..++.....
T Consensus        43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~  121 (354)
T 3nmw_A           43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT  121 (354)
T ss_dssp             CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34456667899999999977 7899999999999999999942          124678999999999999876433333


Q ss_pred             h--hhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHcCCHHHHHHhc-CCCCccchhHHHHHHHHhhcC
Q 037562          405 Q--VRPALPVLAQLIRSNDEEVLTDACWALSYLSDG-TNDKVQAVIEAGVYPRLVELL-GHSSSSVLTPALRTIRNIVKG  480 (670)
Q Consensus       405 ~--~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  480 (670)
                      +  ..|++|.|+.+|++++++++..++++|+|++.. ++.....+.+.|+++.|+.+| ++++..+++.|+.+|+|++..
T Consensus       122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            3  356699999999999999999999999999975 456677788999999999975 667888999999999999986


Q ss_pred             CchhhHHHH-hCCChHHHHHhhccCCch---hHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHHHhhcCChhHHH
Q 037562          481 DDFQTQCII-NCGALPYFLDMLVHNHEE---SIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKK  553 (670)
Q Consensus       481 ~~~~~~~l~-~~~~~~~L~~~l~~~~~~---~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  553 (670)
                      .++....+. ..|+++.|+.++.+..+.   ++++.|+|+|.|++.   +++++++.+.+.|+++.|+.++.+++.++++
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence            655555566 789999999999877222   599999999999987   6888999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      +|+++|.|++.. ++++...+.+.|+++.|+++++++++.++..|.++|.+++...+.
T Consensus       282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999965 788999999999999999999999999999999999999976443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=3.4e-25  Score=214.35  Aligned_cols=240  Identities=28%  Similarity=0.428  Sum_probs=221.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      |.++.|++++.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.+++++++.++..|+++|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999999 99999999999999998888999999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC-CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP-QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                      .+.+.|+++.++.++ .+.++.++..++++|.+++...+ ........++++.++++++++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 67889999999999999996543 3333444789999999999999999999999999999988


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                      +...+.+.+.|+++.++.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+++|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88878899999999999999999999999999999999998888888889999999999999998 99999999999999


Q ss_pred             hhcC
Q 037562          520 ITCG  523 (670)
Q Consensus       520 l~~~  523 (670)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=1.1e-24  Score=210.74  Aligned_cols=243  Identities=29%  Similarity=0.388  Sum_probs=222.7

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +.++.+++.+++++++++..|+++|.+++... .+....+++.|+++.|++++++++ ++++..|+++|++++..+++.+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence            56899999999999999999999999998874 357788899999999999999998 8999999999999999779999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..+.+.|+++.++.+++++++.++..|+++|++++...+..+..+.+.|+++.++.++ .+.++.++..++++|.+++..
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988888899999999999999999 677899999999999999987


Q ss_pred             CCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          398 KPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       398 ~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      .+.. ......++++.++.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++|+|
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN  238 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            5333 344447899999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             hhcCCch
Q 037562          477 IVKGDDF  483 (670)
Q Consensus       477 l~~~~~~  483 (670)
                      ++...+.
T Consensus       239 l~~~~~~  245 (252)
T 4hxt_A          239 IKSGGWL  245 (252)
T ss_dssp             HHHTCBC
T ss_pred             HHcCCCc
Confidence            9986543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=3.5e-25  Score=214.08  Aligned_cols=239  Identities=34%  Similarity=0.538  Sum_probs=219.7

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      ..++.++++|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|+++++.++..|+++|++++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            36889999999999 89999999999876665788888999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                      .+.+.|+++.++.++ .+.++.++..|+++|.+++...+.. ......+++|.++.+++++++.++..++++|++++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999886544 44555789999999999999999999999999999888


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                      +.....+.+.|+++.++.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+++|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999988888888889999999999999998 99999999999999


Q ss_pred             hhc
Q 037562          520 ITC  522 (670)
Q Consensus       520 l~~  522 (670)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            964

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=1e-24  Score=210.76  Aligned_cols=239  Identities=36%  Similarity=0.554  Sum_probs=216.8

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..++.+++.+++++++++..|+++|.++++.. .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            45899999999999999999999998877753 667788999999999999999999 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..+++.|+++.++.+++++++.++..|+++|++++.+.+.....+.+.|+++.++.++ .+.++.++..++++|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999987765548888999999999999 677899999999999999987


Q ss_pred             CCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          398 KPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       398 ~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      .+.. ......++++.|+.++.++++.++..++++|++++...+.....+.+.|+++.++.++.++++.++..|+++|++
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5332 233347899999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             hhc
Q 037562          477 IVK  479 (670)
Q Consensus       477 l~~  479 (670)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.91  E-value=1.3e-23  Score=203.80  Aligned_cols=235  Identities=16%  Similarity=0.131  Sum_probs=198.6

Q ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH-hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh
Q 037562          422 EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE-LLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM  500 (670)
Q Consensus       422 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~  500 (670)
                      .+-+..|+..|.+++... +....+.+.|+++.++. +|.++++.++..|+++|++++.+++.....+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            356788899999998754 45666888999999999 9999999999999999999999988888889999999999999


Q ss_pred             hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 037562          501 LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCV  580 (670)
Q Consensus       501 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i  580 (670)
                      |+++.+..+++.|+|+|+|++.+.+...+.+.+.|+++.|+.++.+++..++..|+|+|.+++.. +++....+++.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643789999999999999999888888899999999999999999999999999999999986 67888999999999


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 037562          581 KPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD-DNGISEKAVEILET  659 (670)
Q Consensus       581 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~~l~~  659 (670)
                      +.|+.++.+++++++..++.+|.+++...+.....+.  ...+.+...+++     .+..++.++ +.+++++|..++++
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~  284 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT  284 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987443221100  011234555543     366677565 78999999999999


Q ss_pred             hcCCcc
Q 037562          660 YWSSRV  665 (670)
Q Consensus       660 ~~~~~~  665 (670)
                      ||.+++
T Consensus       285 ~f~~~~  290 (296)
T 1xqr_A          285 CFSSPA  290 (296)
T ss_dssp             HCC---
T ss_pred             HcCCCC
Confidence            996553

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7e-23  Score=217.21  Aligned_cols=322  Identities=11%  Similarity=0.125  Sum_probs=258.5

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHH-cCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCChh
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQ-SGVVPRFVEFLMR-QDYPQLQFKAAWALTNIASGTSE  315 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~  315 (670)
                      ...+.+.+.+.+++.+.+..|++.|..++..  .+..+.+++ .|++..|++++++ .+ ..+.+.++.+|.|++...+.
T Consensus       334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~  410 (778)
T 3opb_A          334 QLSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEE  410 (778)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcc
Confidence            3466777788777777799999999999654  455555664 4569999999986 55 78999999999999983321


Q ss_pred             --------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562          316 --------------------------------------NTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR  357 (670)
Q Consensus       316 --------------------------------------~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  357 (670)
                                                            .+..+++.|+++.|+.+++++++.+++.|+++|.|++.+ +.
T Consensus       411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~  489 (778)
T 3opb_A          411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN  489 (778)
T ss_dssp             CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred             cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence                                                  456778999999999999999999999999999999965 77


Q ss_pred             hHHHHHhcCChHHHHHHhcccCCh--hHHHHHHHHHHhhhcCCC-CCChh--hhhhhHHHHHHhhcc-CCh---------
Q 037562          358 CRDLVLSQGALIPLLAELNENANL--SMLRTATWTLFNFCRGKP-QPPFN--QVRPALPVLAQLIRS-NDE---------  422 (670)
Q Consensus       358 ~~~~i~~~~~i~~Ll~~l~~~~~~--~~~~~a~~~L~~l~~~~~-~~~~~--~~~~~i~~L~~lL~~-~~~---------  422 (670)
                      .|..+.+.|++++|+.++....+.  ..+..|+.+|+++..... ...+.  ...++++.|+.+|.. ++.         
T Consensus       490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~  569 (778)
T 3opb_A          490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE  569 (778)
T ss_dssp             GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence            899999999999999999655443  278899999999985431 11100  113899999999983 211         


Q ss_pred             ----hHHHHHHHHHHHhccCCh----HHHHHHHHc-CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCC-
Q 037562          423 ----EVLTDACWALSYLSDGTN----DKVQAVIEA-GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCG-  492 (670)
Q Consensus       423 ----~v~~~al~~L~~l~~~~~----~~~~~~~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-  492 (670)
                          --+..|+.+|.|++..++    +..+.++.. |+++.+..+|.+++..++..|+++++|++.+.....+.+++.+ 
T Consensus       570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~  649 (778)
T 3opb_A          570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN  649 (778)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred             cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence                127789999999998762    334557774 8999999999999999999999999999984433223344322 


Q ss_pred             -----ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc-CChHHHHHHhhc--CChhHHHHHHHHHHHhcC
Q 037562          493 -----ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS-GLIGPIVNLLQN--TEFDTKKEAAWAISNATK  564 (670)
Q Consensus       493 -----~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~  564 (670)
                           .++.|+.++..+ +.++|+.|+|+|+|++..++...+.+++. ++++.+++++.+  ++.+++..++.++.|++.
T Consensus       650 ~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          650 PQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             chhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence                 377899999988 99999999999999988788888888876 799999999998  899999999999999996

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-21  Score=208.09  Aligned_cols=400  Identities=12%  Similarity=0.116  Sum_probs=298.5

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +..+.+...+.+........|+..+.+.++.  ....+..+..+.++.|.+.+++   .+++..|+-+|..+........
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~  329 (778)
T 3opb_A          255 GLSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTC  329 (778)
T ss_dssp             THHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTT
T ss_pred             cHHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCc
Confidence            3356666666554444455666666667676  4556666677788999999865   4889999999999886322111


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                      ..+.  ...+.+.+.+.+++.+-+..|+++|..++.+ +..|+.+.+. +++..|+.++....+..+...++.++.|++.
T Consensus       330 ~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~  406 (778)
T 3opb_A          330 INLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLST  406 (778)
T ss_dssp             CCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred             CcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence            1111  2557788888887777799999999999865 5566666554 5699999999555777899999999999998


Q ss_pred             CCCCCC---------------------------------------hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562          397 GKPQPP---------------------------------------FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD  437 (670)
Q Consensus       397 ~~~~~~---------------------------------------~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~  437 (670)
                      ..+...                                       .....|++|.|+.++.++++.++..++++|.+++.
T Consensus       407 ~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~  486 (778)
T 3opb_A          407 LPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR  486 (778)
T ss_dssp             CCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            664210                                       00116899999999999999999999999999996


Q ss_pred             CChHHHHHHHHcCCHHHHHHhcCCCCcc---chhHHHHHHHHhhcCCchhhHHHH----hCCChHHHHHhhccCCch---
Q 037562          438 GTNDKVQAVIEAGVYPRLVELLGHSSSS---VLTPALRTIRNIVKGDDFQTQCII----NCGALPYFLDMLVHNHEE---  507 (670)
Q Consensus       438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~l~----~~~~~~~L~~~l~~~~~~---  507 (670)
                      . ......+++.|+++.|+.++.+....   .+..|+.+|++++.......  ++    ..|++++|+.+|...+..   
T Consensus       487 d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~  563 (778)
T 3opb_A          487 S-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDN  563 (778)
T ss_dssp             S-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSC
T ss_pred             C-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccc
Confidence            6 55667788999999999999987544   79999999999985443221  12    138899999999832111   


Q ss_pred             ----------hHHHHHHHHHHHhhcCC----HHHHHHHHhc-CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH-
Q 037562          508 ----------SIKKEVSWIISNITCGN----REQIQAVIDS-GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQI-  571 (670)
Q Consensus       508 ----------~v~~~a~~~L~~l~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-  571 (670)
                                .-+.+|+.+|.|++..+    ++.+..+++. |+++.+.+++.+++..+|+.|+++++|++..  ++.+ 
T Consensus       564 ~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~  641 (778)
T 3opb_A          564 PLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIA  641 (778)
T ss_dssp             C---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTG
T ss_pred             cccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHH
Confidence                      12779999999999865    3456777874 9999999999999999999999999999984  4432 


Q ss_pred             HHHHHc------CCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcC-
Q 037562          572 KHLVRE------GCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH-  644 (670)
Q Consensus       572 ~~l~~~------~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-  644 (670)
                      ..+.+.      +.++.|+.+++.+|.+++.+|.++|.++....+..            ....+++.++++.+..+..+ 
T Consensus       642 ~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i------------a~~ll~~~~gi~~Ll~lL~~~  709 (778)
T 3opb_A          642 AKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI------------AKELLTKKELIENAIQVFADQ  709 (778)
T ss_dssp             GGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH------------HHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH------------HHHHHHccccHHHHHHHHhcc
Confidence            233321      23778999999999999999999999985432221            13344445889998887666 


Q ss_pred             -CCHHHHHHHHHHHHHhcC
Q 037562          645 -DDNGISEKAVEILETYWS  662 (670)
Q Consensus       645 -~~~~v~~~a~~~l~~~~~  662 (670)
                       ++++++.++..++..++.
T Consensus       710 ~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          710 IDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             TTCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence             899999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=1.5e-21  Score=182.79  Aligned_cols=198  Identities=36%  Similarity=0.548  Sum_probs=186.0

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562          407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  486 (670)
                      .+..+.+..+++++++.++..++++|++++..++.....+.+.|+++.++.+|.++++.++..|+++|++++.+++....
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            67889999999999999999999999999988888888899999999999999999999999999999999988888888


Q ss_pred             HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562          487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG  566 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  566 (670)
                      .+++.|+++.|+.+++++ ++.++..|+|+|+|++.+++.....+.+.|+++.|++++.+++++++..|+++|.+++.. 
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-  168 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-  168 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            899999999999999999 999999999999999998888888999999999999999999999999999999999986 


Q ss_pred             CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHH
Q 037562          567 THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENIL  606 (670)
Q Consensus       567 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~  606 (670)
                      +++....+.+.|+++.|++++++++++++..|+++|.++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            5788888999999999999999999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=3.1e-21  Score=180.64  Aligned_cols=199  Identities=34%  Similarity=0.518  Sum_probs=181.5

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 037562          279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC  358 (670)
Q Consensus       279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  358 (670)
                      ..|..+.|+.++++++ ++++..|+++|.+++.++++.+..+++.|+++.++.+|+++++.++..|+++|+|++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4578999999999999 899999999999999879999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562          359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD  437 (670)
Q Consensus       359 ~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~  437 (670)
                      +..+.+.|+++.++.++ ++.++.++..|+++|.+++...+.. ......++++.|+.+++++++.++..++++|++++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999 7778999999999999999865332 233457899999999999999999999999999999


Q ss_pred             CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562          438 GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK  479 (670)
Q Consensus       438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  479 (670)
                      ..+.....+.+.|+++.++.++.++++.++..|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            878888889999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.85  E-value=5e-20  Score=178.61  Aligned_cols=225  Identities=15%  Similarity=0.136  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 037562          296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE  374 (670)
Q Consensus       296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~  374 (670)
                      .+-+..|+..|.+++. +.++...+...|+++.++. +|.++++.++..|+|+|++++.+++..++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678889999999998 6778888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHH
Q 037562          375 LNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYP  453 (670)
Q Consensus       375 l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~  453 (670)
                      +..+.+..+++.|+|+|++++.+.+.. ......+++|.|+.+|++++..++..++++|++++...++..+.+.+.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            965668899999999999999876433 2334468999999999999999999999999999988888888999999999


Q ss_pred             HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhC--CChHH---HHHhhccCC-chhHHHHHHHHHHHhh
Q 037562          454 RLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINC--GALPY---FLDMLVHNH-EESIKKEVSWIISNIT  521 (670)
Q Consensus       454 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~~~~---L~~~l~~~~-~~~v~~~a~~~L~~l~  521 (670)
                      .|+.+|.+++..++..|+++|++++...+.........  .+...   -.+-++... ..++.+.|..++.++.
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999998754433322211  11111   122233221 3455566666666554

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=4.8e-20  Score=170.40  Aligned_cols=197  Identities=19%  Similarity=0.152  Sum_probs=171.6

Q ss_pred             CHHHHHHhhcCCCCH--HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562          282 VVPRFVEFLMRQDYP--QLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      .++.++++|.+++ +  +++..|++++.+++..+++.+..+++.|+||.|+++|+++++++++.|+++|.||+.++++.+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999988 6  899999999999998789999999999999999999999999999999999999999888999


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc----------------cCChh
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR----------------SNDEE  423 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----------------~~~~~  423 (670)
                      ..+.+.|++++|+++|....+.+++++|+.+|+||+..+..+. .+..+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            9999999999999999656788999999999999998764433 344578899887652                13679


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHc-CCHHHHHHhcCC------CCccchhHHHHHHHHhhcC
Q 037562          424 VLTDACWALSYLSDGTNDKVQAVIEA-GVYPRLVELLGH------SSSSVLTPALRTIRNIVKG  480 (670)
Q Consensus       424 v~~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~  480 (670)
                      ++.++..+|+|++..+++..+.+.+. |+++.|+.+++.      .+.+.++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776777778775 678999999875      2556889999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.81  E-value=1.3e-19  Score=167.48  Aligned_cols=196  Identities=19%  Similarity=0.203  Sum_probs=165.9

Q ss_pred             cHHHHHHHhcCCCh--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          239 ILPAMVDGVWSDDN--SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       239 ~i~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      .+|.+++.|.++++  +++..|++.+.+++..+ .+....+++.|++|.|+++|++++ +++|+.|+++|.+++.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            48999999999888  89999999999998654 566788999999999999999988 999999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---------------ccCC
Q 037562          317 TKVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---------------ENAN  380 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---------------~~~~  380 (670)
                      +..+.+.|+|+.|+++|+ +++.++++.|+.+|+|++... ..+..+.+. ++++|+.++.               ...+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999998 579999999999999999764 457777664 6899887652               1136


Q ss_pred             hhHHHHHHHHHHhhhcCCC-CCChhhh-hhhHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 037562          381 LSMLRTATWTLFNFCRGKP-QPPFNQV-RPALPVLAQLIRS------NDEEVLTDACWALSYLSDG  438 (670)
Q Consensus       381 ~~~~~~a~~~L~~l~~~~~-~~~~~~~-~~~i~~L~~lL~~------~~~~v~~~al~~L~~l~~~  438 (670)
                      +.++++|+++|.|++..++ .+..... .|+++.|+.+++.      .+...++.++.+|+||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6899999999999998653 3333332 5788999999984      2568999999999999864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.78  E-value=2e-17  Score=180.84  Aligned_cols=383  Identities=13%  Similarity=0.165  Sum_probs=283.7

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..+|.+...+.++++.++..|+.+|..++...  .  .......++|.+..++++++ ..+|..|+.+|+.++.....  
T Consensus       203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~--~~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~--  275 (588)
T 1b3u_A          203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLL--P--QEDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP--  275 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--C--HHHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--C--HHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--
Confidence            44788888888899999999999999987653  1  11233457888889988888 79999999999999862111  


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR-CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                       ......+++.+..+++++++.+|..|+.+|+.++...+. .+........++.+..++ ++.++.++..+++++..++.
T Consensus       276 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~  353 (588)
T 1b3u_A          276 -EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSP  353 (588)
T ss_dssp             -HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHH
T ss_pred             -ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence             122335689999999999999999999999999854322 111111223566777777 77889999999999999885


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      .-..  ......++|.+..++++++++++..++.+++.+.......   .....+++.+..++.+.++.+|..++.+++.
T Consensus       354 ~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~  428 (588)
T 1b3u_A          354 ILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL  428 (588)
T ss_dssp             HHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            4211  1223567889999999999999999999988887432211   1223577888888999999999999999999


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA  556 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  556 (670)
                      ++......   .+...+++.+...+.+. +..+|..|+.+++.++......   .....++|.+..++.+++..+|..++
T Consensus       429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~  501 (588)
T 1b3u_A          429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTL  501 (588)
T ss_dssp             HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHH
T ss_pred             HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            97532111   12224678888999888 8999999999999997631111   12345888888888888999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562          557 WAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE  636 (670)
Q Consensus       557 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  636 (670)
                      .+++.++....++    .....+++.|..++++++++||..+++++..+.......               .+ ....++
T Consensus       502 ~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---------------~~-~~~~~p  561 (588)
T 1b3u_A          502 FCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---------------TL-QSEVKP  561 (588)
T ss_dssp             HHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH---------------HH-HHHHHH
T ss_pred             HHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh---------------hh-HHHHHH
Confidence            9999998642211    123458899999999999999999999999988543211               11 133467


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          637 KIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       637 ~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      .|..+..+.+.+|+..|..++..+-
T Consensus       562 ~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          562 ILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHhh
Confidence            7788889999999999999998653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.75  E-value=2.6e-16  Score=172.01  Aligned_cols=381  Identities=10%  Similarity=0.073  Sum_probs=285.8

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .++.+.+.++++++.++..|+.++..++...  .  .......++|.+..++++++ +.+|..|+.+++.++...+..  
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~--~~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--E--LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--C--HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--c--HHhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence            4677777778899999999999999997753  1  12234567889999998888 899999999999988632221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                       .....+++.+..++.+++..+|..++.+|+.++...+.   .......++.++.++ .+.++.++..+++++..++...
T Consensus       238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence             12234788888999999999999999999999843211   112234578888888 6788899999999999999765


Q ss_pred             CCCCh--hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          399 PQPPF--NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       399 ~~~~~--~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      +....  .....++|.+..++++.++.+|..++++++.++......   .....+++.+..+++++++.+|..++.+++.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~  389 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            43221  345678899999999999999999999999987432211   1223578889999999989999999999998


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEA  555 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  555 (670)
                      +.......   .....+++.+..++.+. +..+|..++.++..++.. .++    .....+++.+...+.+++..+|..|
T Consensus       390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a  461 (588)
T 1b3u_A          390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            87633211   11234678888888887 999999999999998752 111    1122367888888888899999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchH
Q 037562          556 AWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGL  635 (670)
Q Consensus       556 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  635 (670)
                      +.+++.++....++.    ....+++.|..+.++++..+|..++.++..+........           +     ....+
T Consensus       462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~-----------~-----~~~~~  521 (588)
T 1b3u_A          462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI-----------T-----TKHML  521 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH-----------H-----HHHTH
T ss_pred             HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH-----------H-----HHHHH
Confidence            999999987433321    223478889999999999999999999999876533211           1     22346


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562          636 EKIENLQSHDDNGISEKAVEILETYWS  662 (670)
Q Consensus       636 ~~l~~L~~~~~~~v~~~a~~~l~~~~~  662 (670)
                      +.+..+..+++++|+..+.+.+..++.
T Consensus       522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          522 PTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence            777788888999999999999988764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.73  E-value=7.1e-15  Score=151.96  Aligned_cols=412  Identities=14%  Similarity=0.160  Sum_probs=298.6

Q ss_pred             hhccHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCCH
Q 037562          236 KLEILPAMVDGVWS--DDNSLQLEATTLFINLLSFDRSP----------------PIDEVI-QSGVVPRFVEFLMRQDYP  296 (670)
Q Consensus       236 ~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~g~l~~L~~ll~~~~~~  296 (670)
                      +-.+++.++..|++  +|.++...++..|.++.+.+..+                ..+.++ +.+.++.|+.+|++.+ -
T Consensus        58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f  136 (651)
T 3grl_A           58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-F  136 (651)
T ss_dssp             HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-H
T ss_pred             hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-H
Confidence            34668999999984  67888999999998887654221                112232 4567999999999988 8


Q ss_pred             HHHHHHHHHHHHHcCCChh-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 037562          297 QLQFKAAWALTNIASGTSE-NTKVVIDH-GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE  374 (670)
Q Consensus       297 ~v~~~a~~~L~~l~~~~~~-~~~~i~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~  374 (670)
                      .+|..++.+|..++...++ ..+.+... ++++.|+.+|.+..+.+|..++..|.+++.++++.++.+.-.|+++.|+.+
T Consensus       137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~I  216 (651)
T 3grl_A          137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI  216 (651)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHH
Confidence            9999999999999987776 77777755 999999999999999999999999999999999999999999999999999


Q ss_pred             hcccC---ChhHHHHHHHHHHhhhcCCC-CCChhhhhhhHHHHHHhhccCCh------hHHHH---HHHHHHHhccCC--
Q 037562          375 LNENA---NLSMLRTATWTLFNFCRGKP-QPPFNQVRPALPVLAQLIRSNDE------EVLTD---ACWALSYLSDGT--  439 (670)
Q Consensus       375 l~~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~~~------~v~~~---al~~L~~l~~~~--  439 (670)
                      +....   ...+...++.++.||.+.++ +.......+++|.|.++++.+++      ....+   ++.++.-+....  
T Consensus       217 i~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~  296 (651)
T 3grl_A          217 ITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP  296 (651)
T ss_dssp             HHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSC
T ss_pred             HHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            95443   23677899999999999874 44455557899999999975432      23333   566666666442  


Q ss_pred             ----hHHHHHHHHcCCHHHHHHhcCCC--CccchhHHHHHHHHhhcCCchhhHHHHhCC---------ChHHHHHhhccC
Q 037562          440 ----NDKVQAVIEAGVYPRLVELLGHS--SSSVLTPALRTIRNIVKGDDFQTQCIINCG---------ALPYFLDMLVHN  504 (670)
Q Consensus       440 ----~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---------~~~~L~~~l~~~  504 (670)
                          ..+...+.+.|+++.++.++...  ...++..|+.+++.+..+++.....+.+..         ++..|+.++.+.
T Consensus       297 ~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~  376 (651)
T 3grl_A          297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNER  376 (651)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTT
T ss_pred             CCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccc
Confidence                23455688999999999998875  456889999999999999988777766432         333355556666


Q ss_pred             CchhHHHHHHHHHHHhhcCCHHHHHHHHhc----------CCh---HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH
Q 037562          505 HEESIKKEVSWIISNITCGNREQIQAVIDS----------GLI---GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQI  571 (670)
Q Consensus       505 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  571 (670)
                      +...+|.+|+.++..+..++++....+...          +.+   ..+...+.+.|+.-.-.|+.++.++... +++..
T Consensus       377 ~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K  455 (651)
T 3grl_A          377 QPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQK  455 (651)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHH
Confidence            578899999999999988877655555432          111   1234445556665556688888998886 55444


Q ss_pred             HHHHH--------cCC---cHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHH
Q 037562          572 KHLVR--------EGC---VKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIE  639 (670)
Q Consensus       572 ~~l~~--------~~~---i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~  639 (670)
                      ..+..        +..   ++.+..++ .+.++.++..-+..|..++..+..            ...+++.+...++.|.
T Consensus       456 ~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~L~  523 (651)
T 3grl_A          456 EQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPFLT  523 (651)
T ss_dssp             HHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHHHH
T ss_pred             HHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHHHH
Confidence            44333        111   33345544 345667777777777777765443            4577887777788876


Q ss_pred             Hhh-cC-C--CHHHHHHHHHHHHHhc
Q 037562          640 NLQ-SH-D--DNGISEKAVEILETYW  661 (670)
Q Consensus       640 ~L~-~~-~--~~~v~~~a~~~l~~~~  661 (670)
                      +.. ++ .  +.-|+-.+.-++.-.|
T Consensus       524 ~~i~~~~~~~~~lvqGL~a~LLGi~y  549 (651)
T 3grl_A          524 GQIAENLGEEEQLVQGLCALLLGISI  549 (651)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCcchHHHHHHHHHHHHHHh
Confidence            543 32 2  2347888888777654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.73  E-value=6.3e-17  Score=184.39  Aligned_cols=386  Identities=13%  Similarity=0.148  Sum_probs=269.9

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG  281 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g  281 (670)
                      +..+|+.+.-.+++.+...-..  ..+.     .....-..+++.+.++++.++..++.++..++..+.....     .+
T Consensus        61 ~~~vR~~a~~~Lkn~i~~~w~~--~~~~-----~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~  128 (852)
T 4fdd_A           61 DEPTRSLSGLILKNNVKAHFQN--FPNG-----VTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PD  128 (852)
T ss_dssp             CHHHHHHHHHHHHHHTTTSGGG--CCHH-----HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TT
T ss_pred             ChHHHHHHHHHHHHHHHHccCC--CCHH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HH
Confidence            4567777776666666432111  1100     1112245667777888899999999999999876422221     34


Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI----DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR  357 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~----~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  357 (670)
                      .++.+++.+.+++ +.+++.++.+|+.++...+.....-.    -..+++.+++.+.++++.+|..|++++.++....+.
T Consensus       129 ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~  207 (852)
T 4fdd_A          129 LLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ  207 (852)
T ss_dssp             HHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence            6889999999988 89999999999999873322211100    113567778888889999999999999998865442


Q ss_pred             hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562          358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD  437 (670)
Q Consensus       358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~  437 (670)
                      ...... ...++.++..+ .+.++.+++.++++|..++...+........++++.+...+++.++.++..++..+..++.
T Consensus       208 ~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~  285 (852)
T 4fdd_A          208 ALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAE  285 (852)
T ss_dssp             HHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            111000 12466777776 6778899999999999999865432222345788888899999999999999999999986


Q ss_pred             CChHHHHHHHHc---CCHHHHHHhc-----------CC-----------CCccchhHHHHHHHHhhcCCchhhHHHHhCC
Q 037562          438 GTNDKVQAVIEA---GVYPRLVELL-----------GH-----------SSSSVLTPALRTIRNIVKGDDFQTQCIINCG  492 (670)
Q Consensus       438 ~~~~~~~~~~~~---~~i~~L~~lL-----------~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~  492 (670)
                      ....  ......   .+++.++..+           .+           .++.+|..|+.++..++...++.   ++ ..
T Consensus       286 ~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~  359 (852)
T 4fdd_A          286 QPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH  359 (852)
T ss_dssp             STTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred             chhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence            5321  112221   4556666666           33           34568999999999998644321   22 24


Q ss_pred             ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH
Q 037562          493 ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK  572 (670)
Q Consensus       493 ~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  572 (670)
                      +++.+...+.+. ++.+|..|++++++++.+..+...... .++++.++..+.++++.||..|++++++++....+....
T Consensus       360 l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~  437 (852)
T 4fdd_A          360 ILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD  437 (852)
T ss_dssp             HHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence            678888888888 999999999999999987665443322 457899999999999999999999999988631110000


Q ss_pred             HHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       573 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      . .-.++++.|+..+.+.++.++..+++++.++++....
T Consensus       438 ~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          438 T-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             T-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred             H-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence            0 1123678888888889999999999999999876543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.71  E-value=2.5e-16  Score=179.46  Aligned_cols=391  Identities=12%  Similarity=0.103  Sum_probs=272.9

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 037562          242 AMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI  321 (670)
Q Consensus       242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  321 (670)
                      .++..+.+.++.+|..|+-.|.+..... -.....-....+-+.+++.+.+++ +.+|..++.+++.++..+...    .
T Consensus        52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~  125 (852)
T 4fdd_A           52 FVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----N  125 (852)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----T
T ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----c
Confidence            3344335678899999999999887542 111111122334556777788777 899999999999998733111    1


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH----hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVL----SQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~----~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      -.+.++.++..+.++++.+++.++.+|+.++...+.....-.    -...++.+++.+ .+.++.++..|++++.++...
T Consensus       126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~  204 (852)
T 4fdd_A          126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIIS  204 (852)
T ss_dssp             CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTT
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhc
Confidence            246789999999999999999999999999854433211000    012355566666 577889999999999988865


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                      .+..........++.+..++.++++.++..+++++..++...+......++ ++++.+...+++.++.++..|+.++..+
T Consensus       205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTL  283 (852)
T ss_dssp             TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence            432222223578888999999999999999999999999766655443333 5788888899998899999999999999


Q ss_pred             hcCCchhhHHHHhC---CChHHHHHhh-----------cc--C--------CchhHHHHHHHHHHHhhcCCHHHHHHHHh
Q 037562          478 VKGDDFQTQCIINC---GALPYFLDML-----------VH--N--------HEESIKKEVSWIISNITCGNREQIQAVID  533 (670)
Q Consensus       478 ~~~~~~~~~~l~~~---~~~~~L~~~l-----------~~--~--------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~  533 (670)
                      +....  ....+..   .+++.++..+           .+  .        .+..+|..|+.++..++...++.   ++ 
T Consensus       284 ~~~~~--~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-  357 (852)
T 4fdd_A          284 AEQPI--CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-  357 (852)
T ss_dssp             TTSTT--HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-
T ss_pred             hcchh--HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-
Confidence            86431  1112211   3456666666           22  0        13457999999999987632221   11 


Q ss_pred             cCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562          534 SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEM  613 (670)
Q Consensus       534 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  613 (670)
                      ..+++.+...+.++++.+|..|++++++++.... +..... -.++++.++.+++++++.|+..++++++++........
T Consensus       358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~  435 (852)
T 4fdd_A          358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP  435 (852)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence            2357778888888899999999999999998643 322221 23478999999999999999999999999887543211


Q ss_pred             ccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          614 NTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      .        ..+.     .+.++.+.....++++.++..|.+++..+.
T Consensus       436 ~--------~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~  470 (852)
T 4fdd_A          436 P--------DTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLE  470 (852)
T ss_dssp             T--------TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             H--------HHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            0        0111     123566666667788999999999988775

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.70  E-value=2.3e-15  Score=163.12  Aligned_cols=373  Identities=16%  Similarity=0.166  Sum_probs=265.3

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..++.+++.+.+++..++..+..++..++... .+    +. .-+++.+.+-+.+++ +.+|..|+++++++..  ++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e----~~-~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PD----MA-IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HH----HH-HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-ch----HH-HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence            44788889899999999999988888886542 11    11 225678888889888 9999999999999863  4444


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..+     ++.+.+++.++++.+|..|+.++.+++...++.   +.+.+.++.+..++ .+.++.++..|+.+|..++..
T Consensus       120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            433     578999999999999999999999998765542   22234577888888 788999999999999999988


Q ss_pred             CCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          398 KPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       398 ~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      .+.. ......+.++.++..+.+.++..+..++.+++.+....+....     .+++.+..++++.++.|+..|++++..
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6543 2333456678888888888999999999999998865543322     467788889999999999999999999


Q ss_pred             hhcC---CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH-----------------H-HH----HH
Q 037562          477 IVKG---DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE-----------------Q-IQ----AV  531 (670)
Q Consensus       477 l~~~---~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-----------------~-~~----~l  531 (670)
                      +...   +++..+.+. .++.+.|+.++. + ++++|..|+.++..+....++                 . +.    .+
T Consensus       266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L  342 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM  342 (591)
T ss_dssp             SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred             HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence            8742   233333222 245566666553 5 788888888888887641111                 0 01    11


Q ss_pred             ---Hhc----CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHH
Q 037562          532 ---IDS----GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLEN  604 (670)
Q Consensus       532 ---~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~  604 (670)
                         .+.    .+++.|...+.+.+.+++..++++++.++... +.....     .++.|++++.+....++..++.++..
T Consensus       343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~  416 (591)
T 2vgl_B          343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAER-----CVSTLLDLIQTKVNYVVQEAIVVIRD  416 (591)
T ss_dssp             HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHHH-----HHHHHHHHHcccchHHHHHHHHHHHH
Confidence               111    24556666677788999999999999999874 333222     57889999998888888888888888


Q ss_pred             HHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHH-hhcCCCHHHHHHHHHHHHHh
Q 037562          605 ILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIEN-LQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       605 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-L~~~~~~~v~~~a~~~l~~~  660 (670)
                      ++...+...                  ..++..|.. +....+++++..+.|++.+|
T Consensus       417 ii~~~p~~~------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey  455 (591)
T 2vgl_B          417 IFRKYPNKY------------------ESIIATLCENLDSLDEPDARAAMIWIVGEY  455 (591)
T ss_dssp             HHHHSCSSC------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred             HHHHCcchH------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence            876543321                  112233322 23345566666666666666

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.68  E-value=3.9e-14  Score=146.49  Aligned_cols=370  Identities=16%  Similarity=0.141  Sum_probs=272.7

Q ss_pred             hhccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCC
Q 037562          236 KLEILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIASGT  313 (670)
Q Consensus       236 ~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~  313 (670)
                      .-+.|+.|...+. +.-.+-++.|+..|..++..-     ...+..++++.|+..|+.+ ++.++...++.+|.++...+
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-----~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~   93 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-----RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND   93 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-----TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-----HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence            3467899999997 455788999999999885432     2344456899999999764 33788889999998876644


Q ss_pred             hh-----------------hHHHH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhc-CChHHHHH
Q 037562          314 SE-----------------NTKVV-IDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR-CRDLVLSQ-GALIPLLA  373 (670)
Q Consensus       314 ~~-----------------~~~~i-~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~-~~i~~Ll~  373 (670)
                      ++                 ..+.+ .+.+.++.|+.+|+..+..+|..++.+|..++...+. .++.+... ++++.|+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~  173 (651)
T 3grl_A           94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD  173 (651)
T ss_dssp             --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred             CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence            32                 22233 3568899999999999999999999999999987776 78888855 88999999


Q ss_pred             HhcccCChhHHHHHHHHHHhhhcCCCCCChhhh-hhhHHHHHHhhccCC----hhHHHHHHHHHHHhccCChHHHHHHHH
Q 037562          374 ELNENANLSMLRTATWTLFNFCRGKPQPPFNQV-RPALPVLAQLIRSND----EEVLTDACWALSYLSDGTNDKVQAVIE  448 (670)
Q Consensus       374 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~  448 (670)
                      +| ++..+.+|..++..|.+++.+++..+..+. .|+++.|+.++..+.    ..+...++.++.++...+..+...+.+
T Consensus       174 lL-~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE  252 (651)
T 3grl_A          174 LL-ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE  252 (651)
T ss_dssp             GG-GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HH-hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99 666788899999999999999855544444 699999999998654    478999999999999999888888999


Q ss_pred             cCCHHHHHHhcCCCCcc------chhH---HHHHHHHhhcCC------chhhHHHHhCCChHHHHHhhccCC-chhHHHH
Q 037562          449 AGVYPRLVELLGHSSSS------VLTP---ALRTIRNIVKGD------DFQTQCIINCGALPYFLDMLVHNH-EESIKKE  512 (670)
Q Consensus       449 ~~~i~~L~~lL~~~~~~------v~~~---a~~~L~~l~~~~------~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~  512 (670)
                      .|+++.|..++..++..      ...+   ++.++.-+....      ......+.+.|+++.++.++.... ...++..
T Consensus       253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~  332 (651)
T 3grl_A          253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE  332 (651)
T ss_dssp             TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence            99999999999864332      2223   556666666542      234566789999999999987543 5679999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhcC-----ChHHHHH----Hhhc-CChhHHHHHHHHHHHhcCCCCHHHHHHHHHc-----
Q 037562          513 VSWIISNITCGNREQIQAVIDSG-----LIGPIVN----LLQN-TEFDTKKEAAWAISNATKFGTHEQIKHLVRE-----  577 (670)
Q Consensus       513 a~~~L~~l~~~~~~~~~~l~~~~-----~i~~L~~----ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-----  577 (670)
                      |..+++.+..+++.....+.+..     -.|.++.    ++.+ ....+|..|+.++...... +++....+...     
T Consensus       333 Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~-N~~~Q~~i~~~llp~~  411 (651)
T 3grl_A          333 TINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK-NQKGQGEIVSTLLPST  411 (651)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC-CHHHHHHHHHhcCCcc
Confidence            99999999999998888877543     2233443    3443 4578999999999999886 44444444432     


Q ss_pred             -----CCcH---HHHhhccCCChHHHHHHHHHHHHHHHhhhhh
Q 037562          578 -----GCVK---PLCDLLLCADPKIVTVCLEGLENILKVGVAE  612 (670)
Q Consensus       578 -----~~i~---~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  612 (670)
                           +.+.   .|..-+-+.|+.-.--|..++..++......
T Consensus       412 ~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~  454 (651)
T 3grl_A          412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ  454 (651)
T ss_dssp             CCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence                 0111   2334444456543334556666666655433

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.66  E-value=8.6e-15  Score=143.26  Aligned_cols=258  Identities=15%  Similarity=0.131  Sum_probs=203.2

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562          278 IQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR  357 (670)
Q Consensus       278 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  357 (670)
                      ...+.++.|++.|.+++ +.+|..|+++|+++..  +         +.++.++.++.++++.+|..|+++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            34568999999999988 8999999999999973  2         3578999999999999999999999998643322


Q ss_pred             hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562          358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD  437 (670)
Q Consensus       358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~  437 (670)
                      ...      .++.+...+..+.++.++..++++|.++....+    ......++.+..++.++++.++..++.+|+++..
T Consensus        88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111      123333333477889999999999999985431    1235678999999999999999999999998763


Q ss_pred             CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHH
Q 037562          438 GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWII  517 (670)
Q Consensus       438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L  517 (670)
                                 .+.++.|+.++.++++.+|..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       2578999999999999999999999999853222         2567888999988 999999999999


Q ss_pred             HHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHH
Q 037562          518 SNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVT  596 (670)
Q Consensus       518 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~  596 (670)
                      +++.           ....++.|+..+.++  +++..|+.+|+.+...            .+++.|.+++. +.+++++.
T Consensus       217 ~~~~-----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~~------------~~~~~L~~~l~~~~~~~~~~  271 (280)
T 1oyz_A          217 SYRK-----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGDK------------TLLPVLDTMLYKFDDNEIIT  271 (280)
T ss_dssp             HHTT-----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCCG------------GGHHHHHHHHTTSSCCHHHH
T ss_pred             HHhC-----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCch------------hhhHHHHHHHhcCCCcHHHH
Confidence            9985           234778888888764  4899999999998652            36788888885 46777887


Q ss_pred             HHHHHHH
Q 037562          597 VCLEGLE  603 (670)
Q Consensus       597 ~a~~~l~  603 (670)
                      .++.++.
T Consensus       272 ~~~~~l~  278 (280)
T 1oyz_A          272 SAIDKLK  278 (280)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7777764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.64  E-value=7.8e-15  Score=158.95  Aligned_cols=373  Identities=13%  Similarity=0.144  Sum_probs=225.5

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV  319 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  319 (670)
                      ++.+.+.+.+.++.++..|+.++.++.... .+..   ...++++.+.++|.+++ +.|+..|+.+|..++..+++....
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~---~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~  197 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMV---EDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL  197 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCH---HHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhc---ccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence            677889999999999999999999998764 3332   23567899999999888 999999999999999865532100


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC-
Q 037562          320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-  398 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-  398 (670)
                      ....+.+..++..+.+.++-.+...+.+++.++..++....     ..++.+...+ ++.++.++..|++++..+.... 
T Consensus       198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~  271 (591)
T 2vgl_B          198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRL-SHANSAVVLSAVKVLMKFLELLP  271 (591)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCC
T ss_pred             hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccC
Confidence            00112356677777778888888999999988755443222     2456666666 6778899999999999987532 


Q ss_pred             --CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH----------------------HH---Hc--
Q 037562          399 --PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQA----------------------VI---EA--  449 (670)
Q Consensus       399 --~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~----------------------~~---~~--  449 (670)
                        +.........+.+.++.++ +++++++..++.++..+....++....                      +.   +.  
T Consensus       272 ~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n  350 (591)
T 2vgl_B          272 KDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN  350 (591)
T ss_dssp             BTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred             CCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence              2222222345666777655 478899999999988887432211110                      00   00  


Q ss_pred             --CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHH
Q 037562          450 --GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQ  527 (670)
Q Consensus       450 --~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~  527 (670)
                        .+++.+..++.+.+..++..++++|+.++...+....     ..++.|++++... ...++.++..++.++....++ 
T Consensus       351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~-  423 (591)
T 2vgl_B          351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN-  423 (591)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-
Confidence              1233333444444455555555555555543322111     2344555555554 445555555555554432222 


Q ss_pred             HHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHH
Q 037562          528 IQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENIL  606 (670)
Q Consensus       528 ~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~  606 (670)
                          ....+++.|.+.++ ..+++++..++|+++..+.....  ..     ..++.+.+-+...++.++..++.++..++
T Consensus       424 ----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~-----~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~  492 (591)
T 2vgl_B          424 ----KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--AD-----ELLESFLEGFHDESTQVQLTLLTAIVKLF  492 (591)
T ss_dssp             ----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HH-----HHHHHHSTTCSSSCHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HH-----HHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence                12345566666665 34566777777777777654221  01     12344444445567778877777777776


Q ss_pred             HhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 037562          607 KVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ-SHDDNGISEKAVEILET  659 (670)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~~~~~v~~~a~~~l~~  659 (670)
                      ...+...            ...+     ...+.... .+.+.+||++|...+.-
T Consensus       493 ~~~p~~~------------~~~i-----~~ll~~~~~d~~d~evrdRA~~y~~l  529 (591)
T 2vgl_B          493 LKKPSET------------QELV-----QQVLSLATQDSDNPDLRDRGYIYWRL  529 (591)
T ss_dssp             TTCCSTT------------HHHH-----HHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred             hcCchHH------------HHHH-----HHHHHHhhhcCCChHHHHHHHHHHHH
Confidence            4322110            0111     12234433 45788999999876553

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.62  E-value=3.3e-14  Score=139.08  Aligned_cols=255  Identities=12%  Similarity=0.082  Sum_probs=199.4

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ..++.+++.+.++++.++..|+++|.++..            .+.++.+++++.+++ +.+|..|+++|+.+... +...
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKCE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTTH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-cccc
Confidence            568999999999999999999999998842            125888999999998 89999999999998752 2211


Q ss_pred             HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          318 KVVIDHGAVPIFV-KLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       318 ~~i~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                      ..     +++.+. .++.++++.++..++++|+++....+....     ..++.++..+ .+.++.++..++++|.++..
T Consensus        89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            11     233444 245779999999999999999744332222     2477888888 77889999999999998765


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      .          ..++.|..++.++++.++..++++|+.+....+         .+++.+..++.++++.+|..|+.+|++
T Consensus       158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2          378999999999999999999999999864332         345788899999999999999999998


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEA  555 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a  555 (670)
                      +..           ...++.|...+.++ +  ++..|+++++.+..           ..+++.|..++. +.+++++..+
T Consensus       219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence            862           24678889999776 4  89999999999843           246888999887 4567888888


Q ss_pred             HHHHHH
Q 037562          556 AWAISN  561 (670)
Q Consensus       556 ~~aL~~  561 (670)
                      ..++.+
T Consensus       274 ~~~l~~  279 (280)
T 1oyz_A          274 IDKLKR  279 (280)
T ss_dssp             HHHHTC
T ss_pred             HHHhhc
Confidence            777653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.58  E-value=1.9e-13  Score=148.53  Aligned_cols=327  Identities=15%  Similarity=0.108  Sum_probs=242.5

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      -.+..+.+.++++++.++..|+++|+++...       .+. ..+++.+.+++.+++ +.||..|+.++.++...+++..
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v  177 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM  177 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence            4567888889999999999999999999421       222 236888899999988 9999999999999988666543


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------------cCChhH
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------------NANLSM  383 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~--------------~~~~~~  383 (670)
                      .     +.++.+..++.+.++.++..|+.+|..++..+++....+.  ..++.++..|.+              ..++..
T Consensus       178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence            2     5778888999999999999999999999977654322332  467888887743              247788


Q ss_pred             HHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc------cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH
Q 037562          384 LRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR------SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE  457 (670)
Q Consensus       384 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~  457 (670)
                      +..++.+|..++..++    .......+.|..++.      +.+..+...++.++..+... +.    +.. .++..+..
T Consensus       251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~  320 (618)
T 1w63_A          251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGR  320 (618)
T ss_dssp             HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHH
Confidence            8889999999987642    122344455555543      23468899999999987642 21    111 35678888


Q ss_pred             hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCCh
Q 037562          458 LLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI  537 (670)
Q Consensus       458 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i  537 (670)
                      ++.++++.+|..|+.+|+.++...+..    +. .....++..+.++ +..+|..|..++..++....  ...     ++
T Consensus       321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv  387 (618)
T 1w63_A          321 FLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM  387 (618)
T ss_dssp             HHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred             HHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence            899999999999999999998754432    21 3567888899988 99999999999999976422  122     35


Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       538 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      +.+...+.+.+.+++..++.+++.++....+....      .++.|+++++.....++..+...+..++...
T Consensus       388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~  453 (618)
T 1w63_A          388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNS  453 (618)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Confidence            67788888889999999999999999863222222      3677778887666666666666777776543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.54  E-value=5.1e-13  Score=152.83  Aligned_cols=356  Identities=14%  Similarity=0.205  Sum_probs=243.3

Q ss_pred             ccHHHHHHHhcC-------CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 037562          238 EILPAMVDGVWS-------DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIA  310 (670)
Q Consensus       238 ~~i~~l~~~l~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  310 (670)
                      ..+|.++..+..       ++..++..|..+|..++........     ..+++.+.+.+.+.+ ..+|..|+++++.++
T Consensus       324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~  397 (861)
T 2bpt_A          324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIM  397 (861)
T ss_dssp             HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHH
Confidence            457888888864       2347888999999888764211111     124666777778888 799999999999999


Q ss_pred             CCCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhcccCChhHHHH
Q 037562          311 SGTS-ENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC---RDLVLSQGALIPLLAELNENANLSMLRT  386 (670)
Q Consensus       311 ~~~~-~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~i~~Ll~~l~~~~~~~~~~~  386 (670)
                      .+.. +.....+. .+++.++..+.++++.+|..++++++.++...+..   ...+  ...++.++..+ .+. +.++..
T Consensus       398 ~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l-~~~-~~v~~~  472 (861)
T 2bpt_A          398 DGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGL-QDH-PKVATN  472 (861)
T ss_dssp             SSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHH-TSC-HHHHHH
T ss_pred             cCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHh-ccC-hHHHHH
Confidence            7542 33333332 47888999999999999999999999998431110   0111  12467777777 333 889999


Q ss_pred             HHHHHHhhhcCCC----CCChhhhhhhHHHHHHhhccCC--hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC
Q 037562          387 ATWTLFNFCRGKP----QPPFNQVRPALPVLAQLIRSND--EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG  460 (670)
Q Consensus       387 a~~~L~~l~~~~~----~~~~~~~~~~i~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  460 (670)
                      +++++.+++....    .........+++.+...+.+.+  +.++..++.+++.++...+......+. .+++.++..+.
T Consensus       473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~  551 (861)
T 2bpt_A          473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG  551 (861)
T ss_dssp             HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence            9999999987532    1122334677888889988544  789999999999998654433333333 34555555554


Q ss_pred             C---------------CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCch-hHHHHHHHHHHHhhcCC
Q 037562          461 H---------------SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE-SIKKEVSWIISNITCGN  524 (670)
Q Consensus       461 ~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~-~v~~~a~~~L~~l~~~~  524 (670)
                      .               ....++..++.+++.++...+....... ..+++.+...+++. +. .++..+..+++.++...
T Consensus       552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~  629 (861)
T 2bpt_A          552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASL  629 (861)
T ss_dssp             HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHH
Confidence            2               1234678899999999875543222122 24677788888877 66 89999999999987632


Q ss_pred             HHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC--hHHHHHHHHHH
Q 037562          525 REQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD--PKIVTVCLEGL  602 (670)
Q Consensus       525 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~~l  602 (670)
                      ......... .+++.++..+.+++++++..|+.++..++.........++  ..+++.+.+.+.+++  ++++..++.++
T Consensus       630 ~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l  706 (861)
T 2bpt_A          630 GKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF  706 (861)
T ss_dssp             GGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred             hhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence            222222222 3788899988888889999999999998865433222222  236777778887654  88999999999


Q ss_pred             HHHHHhhh
Q 037562          603 ENILKVGV  610 (670)
Q Consensus       603 ~~l~~~~~  610 (670)
                      +.++....
T Consensus       707 ~~l~~~~~  714 (861)
T 2bpt_A          707 GDIASNIG  714 (861)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHhh
Confidence            99987643

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.53  E-value=6.8e-13  Score=140.09  Aligned_cols=389  Identities=11%  Similarity=0.070  Sum_probs=263.8

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      +..++..+.++|.+++..|-..|.++...+         ..+++..|+.++.+. .++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            456777777899999999999998764310         123566777877665 2489999999999998753311110


Q ss_pred             H-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC--ChhHHH
Q 037562          319 V-----V------IDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA--NLSMLR  385 (670)
Q Consensus       319 ~-----i------~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~--~~~~~~  385 (670)
                      .     .      ....+-..++..+.++++.+ ..++.+++.++...... .  .-.+.++.++..+ .+.  ++.++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANV-TNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence            0     0      01123346777888877788 88999999987432110 0  0124578888888 445  888999


Q ss_pred             HHHHHHHhhhcCC-CCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCChHHHH-HHHHcCCHHHHHHhcCC
Q 037562          386 TATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTNDKVQ-AVIEAGVYPRLVELLGH  461 (670)
Q Consensus       386 ~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~  461 (670)
                      .++.+|..++... +.........+++.+...+.++  ++.++..++.+++++......... .....-+++.+...+.+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            9999999999753 2222333466888899999887  789999999999997654322111 01111245666777788


Q ss_pred             CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH---------------
Q 037562          462 SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE---------------  526 (670)
Q Consensus       462 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~---------------  526 (670)
                      +++.++..++.++..++...+......+..++++.++..+.+. ++.++..|+..+..++.....               
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP  307 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence            8889999999999999876554332222226777888888887 899999999999888653110               


Q ss_pred             ------HHHHHHhcCChHHHHHHhhc-------CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH
Q 037562          527 ------QIQAVIDSGLIGPIVNLLQN-------TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK  593 (670)
Q Consensus       527 ------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  593 (670)
                            ...... ..++|.++..+..       .+..+|..|+.+|..++.........     .+++.+...+.+.+..
T Consensus       308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~  381 (462)
T 1ibr_B          308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR  381 (462)
T ss_dssp             SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred             cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence                  010011 2356677776643       24578999999999998753322212     3567788888999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562          594 IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWS  662 (670)
Q Consensus       594 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~  662 (670)
                      ++..++.+++.+........           +...+  ...++.+..+..++++.|+..|.+++.++..
T Consensus       382 ~r~aal~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          382 YRDAAVMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999885322110           00011  3457778888889999999999999998853

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.53  E-value=6.2e-13  Score=152.17  Aligned_cols=398  Identities=12%  Similarity=0.119  Sum_probs=261.6

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh---
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN---  316 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~---  316 (670)
                      ++.+.+.+.+.+...+..|+.++..++...........+ ..+++.++..+.+++ +.+|..++++++.++......   
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence            555666677888999999999999997653112222222 247888899998888 899999999999998621110   


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhHHHHHhcCChHHHHHHhcc-cCChhHHHHHHHH
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS-----PRCRDLVLSQGALIPLLAELNE-NANLSMLRTATWT  390 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~~~i~~Ll~~l~~-~~~~~~~~~a~~~  390 (670)
                      ...  -..+++.++..+.++ +.++..|++++.+++...     ......+  ...++.++..+.. +.++.++..++.+
T Consensus       449 ~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~a  523 (861)
T 2bpt_A          449 QQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSA  523 (861)
T ss_dssp             TTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence            001  113567888888776 899999999999987431     1121222  1246677777743 2346889999999


Q ss_pred             HHhhhcCCCCCChhhhhhhHHHHHHhhccC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH
Q 037562          391 LFNFCRGKPQPPFNQVRPALPVLAQLIRSN---------------DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL  455 (670)
Q Consensus       391 L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---------------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L  455 (670)
                      +..++...+..........+|.++..+...               ...++..++.++.+++...+.......+ .+++.+
T Consensus       524 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l  602 (861)
T 2bpt_A          524 LTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLF  602 (861)
T ss_dssp             HHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHH
T ss_pred             HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHH
Confidence            999998765443444456777777766531               3457888999998888554432222222 567778


Q ss_pred             HHhcCCCCc-cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc
Q 037562          456 VELLGHSSS-SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS  534 (670)
Q Consensus       456 ~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~  534 (670)
                      ...+++.+. .++..++.+++.++..........+ ..+++.+...+++. ++.++..|+.+++.++........... .
T Consensus       603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~  679 (861)
T 2bpt_A          603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-D  679 (861)
T ss_dssp             HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-H
T ss_pred             HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-H
Confidence            888888776 8999999999999864433322222 23788888889776 888999999999998864333222222 3


Q ss_pred             CChHHHHHHhhcCC--hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC-----------hHHHHHHHHH
Q 037562          535 GLIGPIVNLLQNTE--FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD-----------PKIVTVCLEG  601 (670)
Q Consensus       535 ~~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-----------~~v~~~a~~~  601 (670)
                      .+++.++..+.+++  .+++..++.+++.++.........++-  .+++.+.+.++...           ..++..++.+
T Consensus       680 ~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~  757 (861)
T 2bpt_A          680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDA  757 (861)
T ss_dssp             HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Confidence            46778888887654  889999999999998753333333322  25777777776421           3578888999


Q ss_pred             HHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC----CHHHHHHHHHHHHHhc
Q 037562          602 LENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD----DNGISEKAVEILETYW  661 (670)
Q Consensus       602 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~----~~~v~~~a~~~l~~~~  661 (670)
                      +..++..-.....      ....+...     .++.+.....+.    +.+++..|..++..+.
T Consensus       758 ~~~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~  810 (861)
T 2bpt_A          758 YVGIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA  810 (861)
T ss_dssp             HHHHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence            9888854321000      01111111     234454444432    7889999988887763

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.52  E-value=5.7e-13  Score=152.75  Aligned_cols=425  Identities=15%  Similarity=0.170  Sum_probs=266.4

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSD--DNSLQLEATTLFINLLSFDRSPPIDEVIQ  279 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  279 (670)
                      +..++...++.+..++....... +.      ......++.+.+.+.++  +..++..|++++..++.............
T Consensus       143 ~~~~r~~al~~l~~l~~~~~~~~-~~------~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  215 (876)
T 1qgr_A          143 TEHMKESTLEAIGYICQDIDPEQ-LQ------DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER  215 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHH-HG------GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHhh-HH------hHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            34577777777777776532110 11      11224467777888766  68899999999998875421000001111


Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--
Q 037562          280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR--  357 (670)
Q Consensus       280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--  357 (670)
                      ..+++.+.+.+.+++ ++++..|+.+|..++...++.....+...+++.++..+.+.++.++..|+.++..++.....  
T Consensus       216 ~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~  294 (876)
T 1qgr_A          216 HFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA  294 (876)
T ss_dssp             HHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHh
Confidence            235777777777777 89999999999999875555544445457888888888889999999999999888743100  


Q ss_pred             --------------------hHHHHHhcCChHHHHHHhcc------cCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHH
Q 037562          358 --------------------CRDLVLSQGALIPLLAELNE------NANLSMLRTATWTLFNFCRGKPQPPFNQVRPALP  411 (670)
Q Consensus       358 --------------------~~~~i~~~~~i~~Ll~~l~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~  411 (670)
                                          .+..+  ...++.++..+..      +.+..++..|..++..++...+.   .....+++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~  369 (876)
T 1qgr_A          295 IEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLP  369 (876)
T ss_dssp             HHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHH
T ss_pred             hhhccccccCCCccchhHHHHHHHH--HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHH
Confidence                                00011  1245666777642      23457888899999888865431   23467788


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh--HHH
Q 037562          412 VLAQLIRSNDEEVLTDACWALSYLSDGTN-DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQT--QCI  488 (670)
Q Consensus       412 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l  488 (670)
                      .+...+.+.+..++..++.+++.++.... +...... ..+++.++..+.++++.+|..|++++++++...+...  ...
T Consensus       370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T 1qgr_A          370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence            88888888999999999999999997654 3333333 3588999999999999999999999999997543311  001


Q ss_pred             HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH--------------HHHHHHHhcCChHHHHHHhhcC---ChhH
Q 037562          489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR--------------EQIQAVIDSGLIGPIVNLLQNT---EFDT  551 (670)
Q Consensus       489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~l~~~~~i~~L~~ll~~~---~~~v  551 (670)
                       -..+++.++..+.+.  +.++..|++++.+++....              +...... ..+++.|+..+...   +..+
T Consensus       449 -l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~  524 (876)
T 1qgr_A          449 -LAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNL  524 (876)
T ss_dssp             -HHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTH
T ss_pred             -HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhH
Confidence             124567777888653  7899999999999975311              0000001 12455555555532   2345


Q ss_pred             HHHHHHHHHHhc--------------------------------------------------------CCCC-HHHHHHH
Q 037562          552 KKEAAWAISNAT--------------------------------------------------------KFGT-HEQIKHL  574 (670)
Q Consensus       552 ~~~a~~aL~~l~--------------------------------------------------------~~~~-~~~~~~l  574 (670)
                      +..+..+++.++                                                        .... .....++
T Consensus       525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  604 (876)
T 1qgr_A          525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS  604 (876)
T ss_dssp             HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence            555555554443                                                        2212 1111111


Q ss_pred             HHcCCcHHHHhhccCCC--hHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcC-CCHHHHH
Q 037562          575 VREGCVKPLCDLLLCAD--PKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH-DDNGISE  651 (670)
Q Consensus       575 ~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-~~~~v~~  651 (670)
                        ..+++.+..++++.+  +.++..++.++..++......         ..++...     .++.+.....+ .+++++.
T Consensus       605 --~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~---------~~~~~~~-----~~~~l~~~l~~~~~~~vr~  668 (876)
T 1qgr_A          605 --DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE---------FLKYMEA-----FKPFLGIGLKNYAEYQVCL  668 (876)
T ss_dssp             --HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG---------GGGGHHH-----HHHHHHHHHHHCTTHHHHH
T ss_pred             --HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh---------HHHHHHH-----HHHHHHHHHcCcchHHHHH
Confidence              124566677776654  478899999999988753321         1112222     24555444443 4778888


Q ss_pred             HHHHHHHHh
Q 037562          652 KAVEILETY  660 (670)
Q Consensus       652 ~a~~~l~~~  660 (670)
                      .|.+.+..+
T Consensus       669 ~a~~~l~~l  677 (876)
T 1qgr_A          669 AAVGLVGDL  677 (876)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887766654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.52  E-value=4.3e-13  Score=145.70  Aligned_cols=327  Identities=13%  Similarity=0.097  Sum_probs=237.6

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .++.+.+.+.+.++.++..|+.++.++.... .+..     .++++.+..++.+.+ +.|+..|+.+|..++..+++...
T Consensus       143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~  215 (618)
T 1w63_A          143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLA  215 (618)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHH
Confidence            3688888899999999999999999997753 2222     257888888998888 99999999999999985554333


Q ss_pred             HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-----cc
Q 037562          319 VVIDHGAVPIFVKLLAS---------------PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-----EN  378 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~-----~~  378 (670)
                      .+.  ..++.++..|.+               .++-.+..++.+|+.++..++...+.     ..+.|..++.     ++
T Consensus       216 ~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~-----~~~~L~~l~~~~~~~~~  288 (618)
T 1w63_A          216 HFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEA-----MNDILAQVATNTETSKN  288 (618)
T ss_dssp             HHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHT-----THHHHHHHHHTSCCSST
T ss_pred             HHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHHhccccccc
Confidence            333  578888876652               47888899999999999776653322     3444444442     12


Q ss_pred             CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHh
Q 037562          379 ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVEL  458 (670)
Q Consensus       379 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  458 (670)
                      .+..+...++.++..+...     ......+++.+..++.+++++++..++.++..++...+.    .+. .....++.+
T Consensus       289 ~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~  358 (618)
T 1w63_A          289 VGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDC  358 (618)
T ss_dssp             HHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHG
T ss_pred             hHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHH
Confidence            3457788888888886432     122346778899999999999999999999999865332    222 466789999


Q ss_pred             cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChH
Q 037562          459 LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIG  538 (670)
Q Consensus       459 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~  538 (670)
                      +.+++..+|..|+.++..++...  ....     +++.+...+.+. +.+++..++.+++.++...+....     ..++
T Consensus       359 l~d~d~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~-----~~v~  425 (618)
T 1w63_A          359 LKDLDVSIKRRAMELSFALVNGN--NIRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKR-----WHID  425 (618)
T ss_dssp             GGSSCHHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHH-----HHHH
T ss_pred             ccCCChhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHH-----HHHH
Confidence            99999999999999999998632  2232     356778888888 899999999999999874322221     2367


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHh
Q 037562          539 PIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       539 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~  608 (670)
                      .+++++......++..+..++..+... .++....     ++..|++++.+  .+..+...++|+++.+...
T Consensus       426 ~ll~lL~~~~~~v~~~~~~~l~~ii~~-~p~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~  491 (618)
T 1w63_A          426 TIMRVLTTAGSYVRDDAVPNLIQLITN-SVEMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL  491 (618)
T ss_dssp             HHHHHHHHTGGGSCSSHHHHHHHHHHH-SCSTHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHhc-ChhHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence            888888877777777788888887764 2333232     45567777753  3445566789999987653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.48  E-value=3.6e-12  Score=151.05  Aligned_cols=405  Identities=13%  Similarity=0.107  Sum_probs=266.3

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .++.+++.+.+.|++++..|...|.+........ ...-....+++.+++.+.+++ +.+|..|+.+|+.++...+.  .
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~-~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--Y   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--H
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccC-CChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--H
Confidence            4788999999999999999999998876542111 111112236778889998877 89999999999999874433  1


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh------HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC------RDLVLSQGALIPLLAELNENANLSMLRTATWTLF  392 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~------~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~  392 (670)
                      .+  ..+++.++..+.++++.+|..|+.+|+.++...+..      ... .....++.++..+.++.+..++..|+.++.
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            11  135778888888889999999999999988433221      011 112357888888844577899999999999


Q ss_pred             hhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHH
Q 037562          393 NFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPAL  471 (670)
Q Consensus       393 ~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~  471 (670)
                      .++...+..........++.+...+.++++.+|..++.+++.++...+..   ++ ..+++.++..+.+. +..++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence            99865433222244778888999999989999999999999999765432   12 24577777777654 357888999


Q ss_pred             HHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh------
Q 037562          472 RTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ------  545 (670)
Q Consensus       472 ~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~------  545 (670)
                      .+++.++...+..... .-..+++.++..+.+. ++++|..+..++..++...+......+ ..+++.++..+.      
T Consensus       236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCC
Confidence            9999998754432221 1236789999999888 899999999999998764322111111 112333332221      


Q ss_pred             -------------------------------cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHH
Q 037562          546 -------------------------------NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKI  594 (670)
Q Consensus       546 -------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  594 (670)
                                                     +...++|..|+.++..++.........+  -..+++.+...+.+.++.+
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~V  390 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENV  390 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHH
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHH
Confidence                                           1124679999999999987532212222  2457888989998999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCC---C---CCc-cHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          595 VTVCLEGLENILKVGVAEMNTGTA---V---GDF-NQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       595 ~~~a~~~l~~l~~~~~~~~~~~~~---~---~~~-~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      +..++.++..++............   .   ... ......+  ...++.+.....++++.++..+..++..+.
T Consensus       391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~  462 (1230)
T 1u6g_C          391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELV  462 (1230)
T ss_dssp             HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            999999998887643210000000   0   000 0001111  122444555567778888877777776553

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.47  E-value=2.6e-13  Score=143.36  Aligned_cols=363  Identities=13%  Similarity=0.090  Sum_probs=242.6

Q ss_pred             ccHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCc----------HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 037562          238 EILPAMVDGVWSD--DNSLQLEATTLFINLLSFDRSPP----------IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWA  305 (670)
Q Consensus       238 ~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~  305 (670)
                      +.+..++..+.++  ++.++..|+..|.++........          ...-....+-..++..+.+++ +.+ ..++.+
T Consensus        35 ~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~  112 (462)
T 1ibr_B           35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQC  112 (462)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHH
T ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHH
Confidence            3455666666643  67899999999999875420000          000011224455778888877 678 889999


Q ss_pred             HHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhcccC-Ch
Q 037562          306 LTNIASGTSENTKVVIDHGAVPIFVKLLASP--SVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNENA-NL  381 (670)
Q Consensus       306 L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll~~l~~~~-~~  381 (670)
                      ++.++.......   .-.+.++.++..+.++  ++.++..++.+|+.++... +..-.... ...++.++..+.+.. +.
T Consensus       113 i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~  188 (462)
T 1ibr_B          113 VAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN  188 (462)
T ss_dssp             HHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence            999987321100   1246889999999888  8999999999999998532 21111111 124677777774443 78


Q ss_pred             hHHHHHHHHHHhhhcCCC--CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc
Q 037562          382 SMLRTATWTLFNFCRGKP--QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL  459 (670)
Q Consensus       382 ~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL  459 (670)
                      .++..|+.++.++.....  .........+++.+...+.++++.++..++.++..++...+......+..++++.++..+
T Consensus       189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  268 (462)
T 1ibr_B          189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  268 (462)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998764321  001111123467777778888999999999999999865443322222225677777788


Q ss_pred             CCCCccchhHHHHHHHHhhcCCch-----------------hhHHHHh---CCChHHHHHhhccC------CchhHHHHH
Q 037562          460 GHSSSSVLTPALRTIRNIVKGDDF-----------------QTQCIIN---CGALPYFLDMLVHN------HEESIKKEV  513 (670)
Q Consensus       460 ~~~~~~v~~~a~~~L~~l~~~~~~-----------------~~~~l~~---~~~~~~L~~~l~~~------~~~~v~~~a  513 (670)
                      .+.++.++..|+.++..++.....                 ....+++   ..+++.++..+...      .+..+|..|
T Consensus       269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a  348 (462)
T 1ibr_B          269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (462)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence            888889999999999988753200                 0000111   23566666666432      145799999


Q ss_pred             HHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH
Q 037562          514 SWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK  593 (670)
Q Consensus       514 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  593 (670)
                      +.++..++...++   .+. ..+++.+...+.+.++.+|..|+.+++.++....++.....+ ..+++.++..+.++++.
T Consensus       349 ~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~  423 (462)
T 1ibr_B          349 GVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV  423 (462)
T ss_dssp             HHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence            9999999774332   111 236677778888889999999999999999854322111111 45788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 037562          594 IVTVCLEGLENILKVGVA  611 (670)
Q Consensus       594 v~~~a~~~l~~l~~~~~~  611 (670)
                      ||..|+++++++......
T Consensus       424 Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          424 VRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999876543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.47  E-value=2.5e-12  Score=147.46  Aligned_cols=406  Identities=13%  Similarity=0.158  Sum_probs=258.2

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh--
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN--  316 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--  316 (670)
                      .++.+.+.+.++++.++..|+.++..++.....+..... -..+++.++..+.+++ +.+|..|++++++++...+..  
T Consensus       367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~  444 (876)
T 1qgr_A          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI  444 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence            356666777788899999999999999765311222222 2347889999999888 899999999999998743321  


Q ss_pred             -HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---------------hhHHHHHhcCChHHHHHHhcccC-
Q 037562          317 -TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP---------------RCRDLVLSQGALIPLLAELNENA-  379 (670)
Q Consensus       317 -~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---------------~~~~~i~~~~~i~~Ll~~l~~~~-  379 (670)
                       ...+  ..+++.++..+.++ +.++..++++|.+++....               .....+  ...++.++..+.... 
T Consensus       445 ~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~  519 (876)
T 1qgr_A          445 NDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDG  519 (876)
T ss_dssp             STTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSS
T ss_pred             cHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCc
Confidence             1111  13567788888775 8999999999999984211               011111  124666777764332 


Q ss_pred             -ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhcc-----------CC----hhHHHHHHHHHHHhccCCh-HH
Q 037562          380 -NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS-----------ND----EEVLTDACWALSYLSDGTN-DK  442 (670)
Q Consensus       380 -~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-----------~~----~~v~~~al~~L~~l~~~~~-~~  442 (670)
                       +..++..+..++..++...+..........++.++..+..           +|    ++++..++.++..++.... ..
T Consensus       520 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~  599 (876)
T 1qgr_A          520 HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD  599 (876)
T ss_dssp             CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             chhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence             3577788889999888776555555556777777766652           12    4567888999999887655 33


Q ss_pred             HHHHHHcCCHHHHHHhcCCCC--ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh
Q 037562          443 VQAVIEAGVYPRLVELLGHSS--SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI  520 (670)
Q Consensus       443 ~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l  520 (670)
                      ..... ..+++.++..+++.+  ..++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.+
T Consensus       600 ~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l  677 (876)
T 1qgr_A          600 ALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDL  677 (876)
T ss_dssp             HHTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence            33333 257788888888764  468999999999998643322222222 36778888887654688999999999999


Q ss_pred             hcCCHHHHHHHHhcCChHHHHHHhhc--CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC-------
Q 037562          521 TCGNREQIQAVIDSGLIGPIVNLLQN--TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD-------  591 (670)
Q Consensus       521 ~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-------  591 (670)
                      +........... ..+++.++..+.+  .+.+++..+++++++++....++...++  ..+++.+.+.++...       
T Consensus       678 ~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~  754 (876)
T 1qgr_A          678 CRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDM  754 (876)
T ss_dssp             HHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHH
T ss_pred             HHHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHH
Confidence            763222222222 3477888888876  3578999999999999763222222221  124566666664332       


Q ss_pred             ----hHHHHHHHHHHHHHHHhhhhhhcc-CCCCCCccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhc
Q 037562          592 ----PKIVTVCLEGLENILKVGVAEMNT-GTAVGDFNQYAQLVEEAEGLEKIENLQSHD--DNGISEKAVEILETYW  661 (670)
Q Consensus       592 ----~~v~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~~l~~~~  661 (670)
                          ..++..++.++..++......... .+......++...+     ++.+..+..++  +..++..|...+..+.
T Consensus       755 ~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~  826 (876)
T 1qgr_A          755 VDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC  826 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence                268888889988887653321000 00000112222222     34444444555  7789988888777653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.42  E-value=5.1e-12  Score=149.76  Aligned_cols=424  Identities=14%  Similarity=0.146  Sum_probs=272.8

Q ss_pred             chhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCc----HHH
Q 037562          201 LNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPP----IDE  276 (670)
Q Consensus       201 ~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~  276 (670)
                      -+..+|..+...+..+......           +.....++.+++.+.++++.++..|+.+|..++.......    ...
T Consensus        60 ~~~~vR~~A~~~L~~l~~~~~~-----------~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~  128 (1230)
T 1u6g_C           60 KNGEVQNLAVKCLGPLVSKVKE-----------YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA  128 (1230)
T ss_dssp             SSHHHHHHHHHHHHHHHTTSCH-----------HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence            3566788887777766643211           1122457888888888888999999999999876532220    011


Q ss_pred             HHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 037562          277 VIQSGVVPRFVEFLMR-QDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS  355 (670)
Q Consensus       277 ~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  355 (670)
                      -.-..++|.|+..+.+ ++ +.++..|+.++..++...+....... ..+++.+...+.++++.+|..|+.+++.++...
T Consensus       129 ~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~  206 (1230)
T 1u6g_C          129 NVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC  206 (1230)
T ss_dssp             HHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence            1223478999999984 66 89999999999998842111100001 235677888888899999999999999998654


Q ss_pred             chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562          356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYL  435 (670)
Q Consensus       356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l  435 (670)
                      +.   .++ ...++.++..+....+..++..++.++..++...+..-......++|.+...+.+++++++..++.++..+
T Consensus       207 ~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l  282 (1230)
T 1u6g_C          207 GN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF  282 (1230)
T ss_dssp             -------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHH
T ss_pred             CH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            32   121 23478888888665555677788888888886543322223467899999999988999999999999988


Q ss_pred             ccCChHHHHHHHHcCCHHHHHHhcCC-------------------------------------CCccchhHHHHHHHHhh
Q 037562          436 SDGTNDKVQAVIEAGVYPRLVELLGH-------------------------------------SSSSVLTPALRTIRNIV  478 (670)
Q Consensus       436 ~~~~~~~~~~~~~~~~i~~L~~lL~~-------------------------------------~~~~v~~~a~~~L~~l~  478 (670)
                      +............ .+++.++..+..                                     ..+++|..|+.++..++
T Consensus       283 ~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~  361 (1230)
T 1u6g_C          283 VRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVV  361 (1230)
T ss_dssp             HHCTTCCCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHH
T ss_pred             HHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHH
Confidence            7654322221221 344444444421                                     12457889999999998


Q ss_pred             cCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC--C-----------------HHHHHHHHhcCChHH
Q 037562          479 KGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG--N-----------------REQIQAVIDSGLIGP  539 (670)
Q Consensus       479 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~--~-----------------~~~~~~l~~~~~i~~  539 (670)
                      ...+......+ ..+++.++..+.+. ++.+|..++.++..++..  .                 ......++ ..+++.
T Consensus       362 ~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~  438 (1230)
T 1u6g_C          362 STRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKA  438 (1230)
T ss_dssp             TTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHH
T ss_pred             HhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHH
Confidence            75443333333 35778888888777 899999999988877641  1                 11111222 235666


Q ss_pred             HHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh--HHHHHHHHHHHHHHHhhhhhhccCC
Q 037562          540 IVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP--KIVTVCLEGLENILKVGVAEMNTGT  617 (670)
Q Consensus       540 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--~v~~~a~~~l~~l~~~~~~~~~~~~  617 (670)
                      +...+.++++.+|..++.+++.++.........++  ..+++.+...+.+.++  .++..++.++..++.......    
T Consensus       439 l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~----  512 (1230)
T 1u6g_C          439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV----  512 (1230)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH----
Confidence            66778888999999999999998764321111111  1257788888887764  888899999888875322110    


Q ss_pred             CCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562          618 AVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       618 ~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                             +...+  ...++.+.....+.+..++..|..++..+
T Consensus       513 -------~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l~~l  546 (1230)
T 1u6g_C          513 -------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQL  546 (1230)
T ss_dssp             -------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             -------HHhHH--HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence                   11122  12355555555566666666665555543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.41  E-value=6.9e-12  Score=116.74  Aligned_cols=189  Identities=19%  Similarity=0.172  Sum_probs=158.2

Q ss_pred             hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      .+.++.+++.++++++.++..|+..|..+..            .+.++.|++++.+++ +.+|..|+++|+.+..     
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~-----   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD-----   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC-----
Confidence            4678999999999999999999999998733            136899999999988 8999999999999864     


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                            .+.++.|+.++.++++.++..|+++|+.+..  +         ..++.|+..+ .+.++.++..++++|..+..
T Consensus        80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~  141 (211)
T 3ltm_A           80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD  141 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC
Confidence                  2468999999999999999999999999852  1         2578888888 78899999999999999853


Q ss_pred             CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                                ...++.|..+++++++.++..++.+|+.+..           ...++.|..+++++++.+|..|..+|.+
T Consensus       142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  200 (211)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                      3578999999999999999999999999853           1355778888889999999999999998


Q ss_pred             hhcCCc
Q 037562          477 IVKGDD  482 (670)
Q Consensus       477 l~~~~~  482 (670)
                      +.....
T Consensus       201 ~~~~~~  206 (211)
T 3ltm_A          201 HKSFNH  206 (211)
T ss_dssp             ------
T ss_pred             cCCCCC
Confidence            876443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.39  E-value=9.6e-12  Score=115.74  Aligned_cols=187  Identities=19%  Similarity=0.167  Sum_probs=158.1

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562          280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      .+.++.|++.|.+++ +.+|..|+.+|+.+..           .+.++.|+.++.++++.++..|+++|+.+..  +   
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---   80 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E---   80 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence            346899999999888 8999999999999865           2578999999999999999999999999852  1   


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                            +.++.++..+ .+.++.++..++++|..+..          ...++.|..++.++++.++..++.+|+.+..  
T Consensus        81 ------~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           81 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                  2578888888 77889999999999999864          3578999999999999999999999999853  


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                               ...++.+..++.++++.+|..|+.+|+.+..           ...++.|..+++++ ++.||..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     1467889999999999999999999999843           13567788899888 99999999999999


Q ss_pred             hhcC
Q 037562          520 ITCG  523 (670)
Q Consensus       520 l~~~  523 (670)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.39  E-value=1.2e-11  Score=114.10  Aligned_cols=184  Identities=20%  Similarity=0.187  Sum_probs=157.6

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +..+.+++.+.++++.++..|++.|..+..            .+.++.|++++.+++ +.+|..|+++|+.+..      
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            557899999999999999999999998732            136889999999888 8999999999999864      


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                           ...++.++.++.++++.+|..|+++|+.+..  +         ..++.++..+ .+.++.++..++++|..+.. 
T Consensus        75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence                 2468999999999999999999999999852  2         2578888888 77889999999999999864 


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                               ...++.|..++.++++.++..++.+|+.+..  +         ..++.|..++.++++.+|..|..+|..+
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                     4578999999999999999999999999842  1         3557788888889999999999999877


Q ss_pred             h
Q 037562          478 V  478 (670)
Q Consensus       478 ~  478 (670)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.37  E-value=2e-11  Score=112.67  Aligned_cols=184  Identities=20%  Similarity=0.189  Sum_probs=158.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      +..+.++++|.+++ +.+|..|+++|+.+..           .+.++.|+.++.++++.++..|+++|+.+..  +    
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----   75 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----   75 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence            35788999999999 8999999999999864           2468999999999999999999999999852  2    


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                           ..++.++..+ .+.++.++..|+++|..+..          ...++.+..++.++++.++..++++|+.+..   
T Consensus        76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                 2578888888 77889999999999999854          3578899999999999999999999999863   


Q ss_pred             HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh
Q 037562          441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI  520 (670)
Q Consensus       441 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l  520 (670)
                              .+.++.+..++.++++.+|..|+.+|+.+..  +         ..++.|..++.++ ++.+|..|..+|.++
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    2567889999999999999999999999832  1         2567888899888 999999999999987


Q ss_pred             h
Q 037562          521 T  521 (670)
Q Consensus       521 ~  521 (670)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.30  E-value=1.1e-11  Score=123.62  Aligned_cols=152  Identities=17%  Similarity=0.224  Sum_probs=82.1

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCcc---------ccccceeeecccccccccccchhh
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTS---------FQNLTNLVVSHCKRLKIVLTSSIA   93 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~---------~~~L~~L~i~~c~~l~~l~~~~~~   93 (670)
                      +|++|+++++ .++.++.. ...+++|+.|++++|..+..+|.....         +++|++|++++| +++.+  +..+
T Consensus       128 ~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l--p~~l  202 (328)
T 4fcg_A          128 GLETLTLARN-PLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL--PASI  202 (328)
T ss_dssp             TCSEEEEESC-CCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC--CGGG
T ss_pred             CCCEEECCCC-ccccCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc--hHhh
Confidence            4444444443 23333322 234445555555555444444433322         445555555544 23322  1234


Q ss_pred             hcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc
Q 037562           94 KTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG  173 (670)
Q Consensus        94 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~  173 (670)
                      ..+++|++|++++|. +..++        .....+++|+.|.+.+|.....++.  ....+++|+.|++.+|+.+..+|.
T Consensus       203 ~~l~~L~~L~L~~N~-l~~l~--------~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          203 ANLQNLKSLKIRNSP-LSALG--------PAIHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             GGCTTCCEEEEESSC-CCCCC--------GGGGGCTTCCEEECTTCTTCCBCCC--CTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             cCCCCCCEEEccCCC-CCcCc--------hhhccCCCCCEEECcCCcchhhhHH--HhcCCCCCCEEECCCCCchhhcch
Confidence            455555555555543 22221        1234567777777777777666554  245577788888888877777777


Q ss_pred             CCcCCCCccceeeeecc
Q 037562          174 GELSTPNLHKVQLSRWD  190 (670)
Q Consensus       174 ~~~~~~~L~~l~i~~~~  190 (670)
                      .+..+++|+.|++++++
T Consensus       272 ~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             TGGGCTTCCEEECTTCT
T ss_pred             hhhcCCCCCEEeCCCCC
Confidence            77777788888776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.29  E-value=1.1e-11  Score=123.72  Aligned_cols=154  Identities=18%  Similarity=0.182  Sum_probs=127.3

Q ss_pred             CCccccEEEeccCcCcccccccc--------cccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccch
Q 037562           20 NGMEVKISEAYNCYRLENILIEE--------SSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSS   91 (670)
Q Consensus        20 ~~~~L~~L~i~~c~~l~~~~~~~--------~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~   91 (670)
                      ...+|++|++++|..+..++...        ...+++|++|++++| .+..+|..+..+++|++|++++|. +..+  ++
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l--~~  223 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSAL--GP  223 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCC--CG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcC--ch
Confidence            34499999999999888877532        124899999999998 466788778889999999999984 4444  24


Q ss_pred             hhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccc
Q 037562           92 IAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIF  171 (670)
Q Consensus        92 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~  171 (670)
                      .+..+++|++|++++|.....++.        ....+++|+.|.+.+|..+..++..  ...+++|+.|++++|+.+..+
T Consensus       224 ~l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          224 AIHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             GGGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCC
T ss_pred             hhccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhc
Confidence            577899999999999987765542        3346899999999999999888764  567899999999999999999


Q ss_pred             ccCCcCCCCccceeee
Q 037562          172 SGGELSTPNLHKVQLS  187 (670)
Q Consensus       172 p~~~~~~~~L~~l~i~  187 (670)
                      |.++..+++|+.+.+.
T Consensus       294 P~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          294 PSLIAQLPANCIILVP  309 (328)
T ss_dssp             CGGGGGSCTTCEEECC
T ss_pred             cHHHhhccCceEEeCC
Confidence            9999989999988775

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.28  E-value=4.1e-10  Score=121.77  Aligned_cols=329  Identities=12%  Similarity=0.111  Sum_probs=224.1

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFL--MRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll--~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      .+..+.+-++++++.++..|+++++++..       ..+.+ .+++.+.+++  .+.+ +.||..|+.++.++...+++.
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~-~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS-------REMAE-AFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHH-HHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHH-HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence            46677888889999999999999999832       22333 3677888888  7778 999999999999998855543


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc----c--c----------CC
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN----E--N----------AN  380 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~----~--~----------~~  380 (670)
                      ..   ..+.++.+..+|.++++.++..|+.++..++..++..   +  ...++.++..+.    .  .          .+
T Consensus       183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence            32   2478999999999999999999999999998665431   1  112444444332    1  1          15


Q ss_pred             hhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCChHHHHHHHHc
Q 037562          381 LSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI---------RSND--EEVLTDACWALSYLSDGTNDKVQAVIEA  449 (670)
Q Consensus       381 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL---------~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~  449 (670)
                      +..+...+..+..++..............++.++..+         ++.+  ..|...++.++..+.. .+....     
T Consensus       255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----
T ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----
Confidence            6778888888888775321111111123333333322         1223  3788888899888863 222222     


Q ss_pred             CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc-cCCchhHHHHHHHHHHHhhcCCHHHH
Q 037562          450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV-HNHEESIKKEVSWIISNITCGNREQI  528 (670)
Q Consensus       450 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~  528 (670)
                      .++..+..++.++++.+|..|+..|..++...+. .. ++ ......++..+. ++ +..++..|..++..++.  +.+.
T Consensus       329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv  402 (621)
T 2vgl_A          329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA  402 (621)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence            3567788999888999999999999999876542 11 22 245777888888 77 89999999999999974  4444


Q ss_pred             HHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       529 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                      ..     ++..|...+...+.+++..++.+++.++....+.. ..     .++.|++++......+...+...+..++.
T Consensus       403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~~-----~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~  470 (621)
T 2vgl_A          403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-TW-----YVDTILNLIRIAGDYVSEEVWYRVIQIVI  470 (621)
T ss_dssp             HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-HH-----HHHHHHHHHHHHGGGSCSHHHHHHHHHHG
T ss_pred             HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-HH-----HHHHHHHHHHhhcccchHHHHHHHHHHHh
Confidence            43     45567788888899999999999999875311111 11     35667777755444444445555555554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.26  E-value=8.4e-10  Score=119.37  Aligned_cols=328  Identities=13%  Similarity=0.104  Sum_probs=232.8

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      ...+..++.+.+++...+.-+.-++..++..+ +   +.+.-  +++.+.+-+++++ +.++..|+++++++..  ++..
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~---e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-S---ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA  144 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-H---HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-c---HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence            34678888899999999999998888886542 2   11111  3567777788888 8999999999999964  5544


Q ss_pred             HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562          318 KVVIDHGAVPIFVKLL--ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC  395 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  395 (670)
                      +     .+++.+.+.+  .+.++.||..|+.++.++....|+.   +...+.++.+..++ .+.++.++.+|+.++..++
T Consensus       145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence            3     3467888898  8899999999999999998765542   22236788888888 7889999999999999998


Q ss_pred             cCCCCCChhhhhhhHHHHH----HhhccC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHcCCHHHHHH
Q 037562          396 RGKPQPPFNQVRPALPVLA----QLIRSN-------------DEEVLTDACWALSYLSDGT-NDKVQAVIEAGVYPRLVE  457 (670)
Q Consensus       396 ~~~~~~~~~~~~~~i~~L~----~lL~~~-------------~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~i~~L~~  457 (670)
                      ...+.    .....+|.++    +++..+             ++-.+..++..+..++... +.....+.+  ++..++.
T Consensus       216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~  289 (621)
T 2vgl_A          216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN  289 (621)
T ss_dssp             HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred             HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence            76532    1223444444    443322             6789999999999988643 333332332  3334443


Q ss_pred             hcC---------CCCc--cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH
Q 037562          458 LLG---------HSSS--SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE  526 (670)
Q Consensus       458 lL~---------~~~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~  526 (670)
                      .+.         +.+.  .|...|+.++..+.. .+....     .++..|..++.+. ++++|..|..++..++...+.
T Consensus       290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~  362 (621)
T 2vgl_A          290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS  362 (621)
T ss_dssp             HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT
T ss_pred             hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc
Confidence            321         1122  677788888888752 222222     3567788889878 999999999999999876542


Q ss_pred             HHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562          527 QIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI  605 (670)
Q Consensus       527 ~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  605 (670)
                       . ..+ ......++..+. ++|..++..|+..+..++..   .+...     ++..|...+.+.+.+++..++.++..+
T Consensus       363 -~-~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l  431 (621)
T 2vgl_A          363 -H-EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL  431 (621)
T ss_dssp             -H-HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             -H-HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             1 122 246778888888 89999999999999999863   44444     456677777778888888887777776


Q ss_pred             HH
Q 037562          606 LK  607 (670)
Q Consensus       606 ~~  607 (670)
                      ..
T Consensus       432 a~  433 (621)
T 2vgl_A          432 AE  433 (621)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.07  E-value=2e-08  Score=84.67  Aligned_cols=218  Identities=17%  Similarity=0.197  Sum_probs=175.6

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC
Q 037562          322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP  401 (670)
Q Consensus       322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  401 (670)
                      +..++..++.+|.+.-..++.+|+..+.+++...++..+-+     +..|+.++..+.........+.++..++...|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            44578899999999889999999999999998888765543     56677788788888887888889998887643  


Q ss_pred             ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 037562          402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD  481 (670)
Q Consensus       402 ~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  481 (670)
                        ..+.+.+|.+..-..-+|+.++.....+|..++..++....     +++.-+..++.+++..-+..|+..++.+..+.
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              45678888888888888999999999999999988776555     55677889999988778888888888877654


Q ss_pred             chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHH
Q 037562          482 DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN  561 (670)
Q Consensus       482 ~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  561 (670)
                      .....     -++|.|..+|.+. +.-||..|..+|.+++..++..+..+.      .-+.-+++.+..++..+..+|+.
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence            43322     4789999999999 999999999999999998887554332      23455667788899999999988


Q ss_pred             hcCC
Q 037562          562 ATKF  565 (670)
Q Consensus       562 l~~~  565 (670)
                      ++..
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.01  E-value=3.1e-08  Score=108.03  Aligned_cols=306  Identities=12%  Similarity=0.081  Sum_probs=208.2

Q ss_pred             ccHHHHHHHhc---CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHH
Q 037562          238 EILPAMVDGVW---SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-------YPQLQFKAAWALT  307 (670)
Q Consensus       238 ~~i~~l~~~l~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-------~~~v~~~a~~~L~  307 (670)
                      +++..+-+.+.   ++++.++.-|+.+|..+..+..    ..     ++..|...+.+++       .+.++..|+..|+
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            34566666665   5678889999999998866531    11     3566677675443       2578999999999


Q ss_pred             HHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHH
Q 037562          308 NIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTA  387 (670)
Q Consensus       308 ~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a  387 (670)
                      .+..++..  .     .+++.|...+.+.+..+++.|+.+|+.+..+.... +      ++..++..+..+.+..+++.+
T Consensus       463 la~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~a  528 (963)
T 4ady_A          463 LAAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGL  528 (963)
T ss_dssp             HHSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHH
T ss_pred             HHhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHH
Confidence            98664421  1     24677888888777778888999999875433221 1      356777777677788999999


Q ss_pred             HHHHHhhhcCCCCCChhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHHh--ccCChHHHHHHHHcCCHHHHHH-hcCCCC
Q 037562          388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLIR-SNDEEVLTDACWALSYL--SDGTNDKVQAVIEAGVYPRLVE-LLGHSS  463 (670)
Q Consensus       388 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~al~~L~~l--~~~~~~~~~~~~~~~~i~~L~~-lL~~~~  463 (670)
                      +.+|+.+..+.        ...++.++..|. +.++-+|..++.+++--  ..++...         ++.|+. +..+.+
T Consensus       529 algLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~  591 (963)
T 4ady_A          529 AVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSN  591 (963)
T ss_dssp             HHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSC
T ss_pred             HHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCc
Confidence            99999887665        445677777776 46788888877776533  3333332         232333 334567


Q ss_pred             ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHH
Q 037562          464 SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNL  543 (670)
Q Consensus       464 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l  543 (670)
                      ..+|..|+.+|+.++.++++         .++.++..+....++.+|..|+++++.++.+++.       ..+++.|..+
T Consensus       592 d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L  655 (963)
T 4ady_A          592 DDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPL  655 (963)
T ss_dssp             HHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHH
Confidence            78999999999998876653         3455556554433999999999999999886553       1256677888


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCCHH---HHHHHHHcCCcHHHHhhcc--CCChHHHHHHHHHHHH
Q 037562          544 LQNTEFDTKKEAAWAISNATKFGTHE---QIKHLVREGCVKPLCDLLL--CADPKIVTVCLEGLEN  604 (670)
Q Consensus       544 l~~~~~~v~~~a~~aL~~l~~~~~~~---~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~~l~~  604 (670)
                      ..+.+..|+..|+.+|+.+....+..   ....     ....|.....  +.++..+..+.-+.+-
T Consensus       656 ~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~~dk~~d~~~~fga~iAqGl  716 (963)
T 4ady_A          656 TKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVITNKHQEGLAKFGACVAQGI  716 (963)
T ss_dssp             HTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            88999999999999999998754332   2222     2333555553  3566666666555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.99  E-value=1.5e-10  Score=116.30  Aligned_cols=60  Identities=20%  Similarity=0.200  Sum_probs=30.6

Q ss_pred             cccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc---CCcCCCCccceeeeec
Q 037562          127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG---GELSTPNLHKVQLSRW  189 (670)
Q Consensus       127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~---~~~~~~~L~~l~i~~~  189 (670)
                      .+|+|+.|.+.+|..++..... ....+|+|+.|++.+|+.+.  |.   ....+++|+.|+++++
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDII--PETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTS
T ss_pred             hCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCC--HHHHHHHhcCCCCCEEeccCc
Confidence            3566666666666544432211 12345666666666665332  22   1234566666666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.97  E-value=1.1e-10  Score=117.27  Aligned_cols=161  Identities=21%  Similarity=0.158  Sum_probs=113.2

Q ss_pred             ccccEEEeccCcCcccc-cccccccCCCCcEEEEecCCCCc-cccCCCccccccceeeecccccccccccchhhhccccc
Q 037562           22 MEVKISEAYNCYRLENI-LIEESSVMNNLVILCVHCCDHLI-NLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~-~~~~~~~~~~L~~L~i~~c~~l~-~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      .+|++|++++|. +... .......+++|++|++++|. +. ..+.....+++|++|++++|..++....+..+..+++|
T Consensus        93 ~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           93 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            488999999885 4432 22223678999999999995 43 34444556899999999999877753223446789999


Q ss_pred             ceeccccccccceecccccccccccccccc-ccccccccccc-cccccccCCcccCCCCccEEeEecCCCcc-ccccCCc
Q 037562          100 RYMEIESCDKITEIVLVDDVVAQDEVITFR-ELKELNLLQMQ-NLISFCSGNCAFTFPSLEILVVNYCPNMK-IFSGGEL  176 (670)
Q Consensus       100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~l~~~~~~~~~~~~~~L~~L~i~~C~~l~-~~p~~~~  176 (670)
                      ++|++++|..+....      .......+| +|++|.+.+|. .++.-........+|+|+.|++.+|..+. ..+..+.
T Consensus       171 ~~L~l~~~~~l~~~~------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          171 DELNLSWCFDFTEKH------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             CEEECCCCTTCCHHH------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             CEEcCCCCCCcChHH------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence            999999997665320      011234588 99999999997 55421111123468999999999998665 4455566


Q ss_pred             CCCCccceeeeecc
Q 037562          177 STPNLHKVQLSRWD  190 (670)
Q Consensus       177 ~~~~L~~l~i~~~~  190 (670)
                      .+++|++|+++++.
T Consensus       245 ~l~~L~~L~l~~~~  258 (336)
T 2ast_B          245 QLNYLQHLSLSRCY  258 (336)
T ss_dssp             GCTTCCEEECTTCT
T ss_pred             CCCCCCEeeCCCCC
Confidence            78999999998775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.95  E-value=2.6e-09  Score=101.25  Aligned_cols=83  Identities=17%  Similarity=0.176  Sum_probs=39.1

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|+.|+++++ +++.++......+++|+.|+++++..+..+++ .+..+++|++|++++|.+++.+. +..+..+++|++
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCE
T ss_pred             cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCE
Confidence            4555555544 24444433334455555555555544444443 22344555555555555554431 122334555555


Q ss_pred             eccccc
Q 037562          102 MEIESC  107 (670)
Q Consensus       102 L~i~~c  107 (670)
                      |++.++
T Consensus       110 L~l~~n  115 (239)
T 2xwt_C          110 LGIFNT  115 (239)
T ss_dssp             EEEEEE
T ss_pred             EeCCCC
Confidence            555544

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.95  E-value=3.6e-08  Score=87.20  Aligned_cols=226  Identities=17%  Similarity=0.158  Sum_probs=172.4

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562          407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  486 (670)
                      .+.+..+..++++.|+.++.+++.++..+....++......-..+++.++.++.+.+..+...|++++..+..+.+-.-.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45778899999999999999999999999866444444433347889999999999999999999999999987764444


Q ss_pred             HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562          487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG  566 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  566 (670)
                      .+.  .+...+.+.+.++ ++-.+.+|+-.++-+--.++.       .+++..+..++.+.+.+++..+..++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            333  2577888999988 999999999999998332211       235677788888999999999999999998853


Q ss_pred             -CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh-cC
Q 037562          567 -THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ-SH  644 (670)
Q Consensus       567 -~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~  644 (670)
                       +++.     -.+++.-+-++++++|+.++..|+.++..++...-...          ...+..   +.......|. -.
T Consensus       182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~----------~~~~~~---~~~~~v~~l~~~~  243 (265)
T 3b2a_A          182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN----------VKIELL---KISRIVDGLVYRE  243 (265)
T ss_dssp             SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC----------CHHHHH---HHHHHHHHGGGCS
T ss_pred             CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh----------HHHHHH---HHHHHHHHHHHhc
Confidence             2221     23477788889999999999999999999987643321          122222   3344456676 67


Q ss_pred             CCHHHHHHHHHHHHHh
Q 037562          645 DDNGISEKAVEILETY  660 (670)
Q Consensus       645 ~~~~v~~~a~~~l~~~  660 (670)
                      ..|.++.+|..+.+.+
T Consensus       244 ~~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          244 GAPIIRLKAKKVSDLI  259 (265)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHH
Confidence            7899999998776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.95  E-value=3e-09  Score=97.39  Aligned_cols=147  Identities=14%  Similarity=0.163  Sum_probs=109.6

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|.+.++ +++.++.  ...+++|++|++++| .+..++ ....+++|++|++++|. ++... +..+..+++|++|
T Consensus        45 ~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L  117 (197)
T 4ezg_A           45 SLTYITLANI-NVTDLTG--IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDK-IPNLSGLTSLTLL  117 (197)
T ss_dssp             TCCEEEEESS-CCSCCTT--GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGG-SCCCTTCTTCCEE
T ss_pred             CccEEeccCC-CccChHH--HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCccc-ChhhcCCCCCCEE
Confidence            8999999887 4666662  578899999999999 565543 45678999999999974 44321 2456789999999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH  182 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~  182 (670)
                      ++++|.--...+        .....+++|+.|.+++|..++.++.   ...+|+|+.|++.+|+ +..+| ....+++|+
T Consensus       118 ~Ls~n~i~~~~~--------~~l~~l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~  184 (197)
T 4ezg_A          118 DISHSAHDDSIL--------TKINTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFDG-VHDYR-GIEDFPKLN  184 (197)
T ss_dssp             ECCSSBCBGGGH--------HHHTTCSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTBC-CCCCT-TGGGCSSCC
T ss_pred             EecCCccCcHhH--------HHHhhCCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCCC-CcChH-HhccCCCCC
Confidence            999885221111        1234689999999999987777753   5678999999999985 56666 556689999


Q ss_pred             ceeeeec
Q 037562          183 KVQLSRW  189 (670)
Q Consensus       183 ~l~i~~~  189 (670)
                      .|++++.
T Consensus       185 ~L~l~~N  191 (197)
T 4ezg_A          185 QLYAFSQ  191 (197)
T ss_dssp             EEEECBC
T ss_pred             EEEeeCc
Confidence            9988654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.92  E-value=5.3e-08  Score=95.56  Aligned_cols=278  Identities=11%  Similarity=0.035  Sum_probs=166.5

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      ..+.+++.++++|...+.-..-.+..++... .+..  +    +++.+.+=+++++ +-+|-.|+++++++..  ++..+
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence            4567788889999999999999998886652 2221  1    5677888889998 8999999999999986  33333


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                      .     +.+.+.+.+.+.++.||..|+.+...+....|+..     .+.+..+-.++ .+.++.++.+|..++..+...+
T Consensus       139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence            3     34667778899999999999999999998777632     24788888888 7788899999999999998764


Q ss_pred             CCCChhhhhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562          399 PQPPFNQVRPALPVLAQLIRSN---DEEVLTDACWALSYLSDGT-NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI  474 (670)
Q Consensus       399 ~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L  474 (670)
                              ...+..++..+...   ++-.+...++.+..+...+ +.     ....+++.+..+|++.++.|..+|+++|
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                    22445555555443   5666666777776666543 22     2236778888999999999999999999


Q ss_pred             HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHH
Q 037562          475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKE  554 (670)
Q Consensus       475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  554 (670)
                      ..+......    . ...++..+..++.+. ++++|..|...|..+....|...+.     .-..+.+++.++|..+...
T Consensus       275 ~~l~~~~~~----~-~~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAK----E-LAPAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred             HhccCCCHH----H-HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence            888652221    1 124567777888888 8999999999999998766664432     3345667777888877777


Q ss_pred             HHHHHHH
Q 037562          555 AAWAISN  561 (670)
Q Consensus       555 a~~aL~~  561 (670)
                      |..+|..
T Consensus       344 Aittllk  350 (355)
T 3tjz_B          344 AITTLLK  350 (355)
T ss_dssp             -------
T ss_pred             HHHHhhh
Confidence            7766654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.91  E-value=1.7e-08  Score=110.76  Aligned_cols=217  Identities=14%  Similarity=0.097  Sum_probs=155.7

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-Cch
Q 037562          280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSVDVRKQTVWALGNVAGD-SPR  357 (670)
Q Consensus       280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~-~~~  357 (670)
                      ..++| +++.|++++ ++.|..|+++|++++. ++..++.+...+++..++ .+|.+++.++|..|+++|.||+.+ .+.
T Consensus        34 ~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           34 DKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            33444 567789999 8999999999999997 899999999999998765 578899999999999999999954 466


Q ss_pred             hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562          358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD  437 (670)
Q Consensus       358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~  437 (670)
                      ....+...|++++|..++...         ...+........... ......+           ..+...++.+|.+++.
T Consensus       111 ~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e  169 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLAL  169 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHhh---------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHh
Confidence            778888999999999998321         111222111110000 0001111           2344567778888888


Q ss_pred             CChHHHHHHHHcCCHHHHHHhcCCC---CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhh--ccCCchhHHHH
Q 037562          438 GTNDKVQAVIEAGVYPRLVELLGHS---SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDML--VHNHEESIKKE  512 (670)
Q Consensus       438 ~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l--~~~~~~~v~~~  512 (670)
                      .++.....+...+.++.++..|.+.   ..+++..|+.+|..++..++...+.+.+.+....+..++  ... +...+..
T Consensus       170 ~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~l  248 (684)
T 4gmo_A          170 ARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVM  248 (684)
T ss_dssp             HCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHH
T ss_pred             CCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHH
Confidence            7777777788888999999888543   346899999999999999988888777766543322222  233 3445778


Q ss_pred             HHHHHHHhh
Q 037562          513 VSWIISNIT  521 (670)
Q Consensus       513 a~~~L~~l~  521 (670)
                      +++++.|+.
T Consensus       249 a~giL~Ni~  257 (684)
T 4gmo_A          249 ACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhHh
Confidence            899999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.88  E-value=7.8e-09  Score=97.97  Aligned_cols=154  Identities=12%  Similarity=0.068  Sum_probs=110.4

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhccccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      ..+|++|++.++..++.++......+++|++|++++|..+..+++. +..+++|++|+++++. ++.+   +.+..+++|
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~l---p~~~~l~~L  129 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMF---PDLTKVYST  129 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSC---CCCTTCCBC
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccc---ccccccccc
Confidence            3489999999997788887655578899999999998889888754 4578899999999884 5554   225667777


Q ss_pred             c---eeccccccccceeccccccccccccccccccc-cccccccccccccccCCcccCCCCccEEeEecCCCccccccC-
Q 037562          100 R---YMEIESCDKITEIVLVDDVVAQDEVITFRELK-ELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-  174 (670)
Q Consensus       100 ~---~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-  174 (670)
                      +   +|++++++.++.++.       .....+++|+ .|.+.+. +++.++..  ....++|+.|++.+++.++.+|.. 
T Consensus       130 ~~L~~L~l~~N~~l~~i~~-------~~~~~l~~L~~~L~l~~n-~l~~i~~~--~~~~~~L~~L~L~~n~~l~~i~~~~  199 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPV-------NAFQGLCNETLTLKLYNN-GFTSVQGY--AFNGTKLDAVYLNKNKYLTVIDKDA  199 (239)
T ss_dssp             CSEEEEEEESCTTCCEECT-------TTTTTTBSSEEEEECCSC-CCCEECTT--TTTTCEEEEEECTTCTTCCEECTTT
T ss_pred             ccccEEECCCCcchhhcCc-------ccccchhcceeEEEcCCC-CCcccCHh--hcCCCCCCEEEcCCCCCcccCCHHH
Confidence            7   999988877776642       1123467777 7777664 35555543  223367888888888777777654 


Q ss_pred             CcCC-CCccceeeee
Q 037562          175 ELST-PNLHKVQLSR  188 (670)
Q Consensus       175 ~~~~-~~L~~l~i~~  188 (670)
                      ...+ ++|+.|++++
T Consensus       200 ~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             TTTCSBCCSEEECTT
T ss_pred             hhccccCCcEEECCC
Confidence            3446 7888887765

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.88  E-value=7.8e-08  Score=94.38  Aligned_cols=301  Identities=16%  Similarity=0.083  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc
Q 037562          298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE  377 (670)
Q Consensus       298 v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~  377 (670)
                      .+....+++.-+..|.+-......  .+...+++++.+++..++..+--.+.+++...++.   +.   ++..+.+-+ +
T Consensus        44 c~~~l~kll~l~~~G~~f~~~e~t--~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---iL---v~Nsl~kDl-~  114 (355)
T 3tjz_B           44 CAHILTKILYLINQGEHLGTTEAT--EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---II---VTSSLTKDM-T  114 (355)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHHHHH--HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---GG---GHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHCCCCCchhHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---HH---HHHHHHhhc-C
Confidence            344566666666654322111111  23566788999999999999999999988664332   21   477788888 7


Q ss_pred             cCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH
Q 037562          378 NANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE  457 (670)
Q Consensus       378 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~  457 (670)
                      ++++-++..|+.+++++....      ....+.+.+.+.+.+.++.|+..|+.+...+....++..+     +++..+..
T Consensus       115 ~~N~~iR~lALRtL~~I~~~~------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~  183 (355)
T 3tjz_B          115 GKEDSYRGPAVRALCQITDST------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQE  183 (355)
T ss_dssp             SSCHHHHHHHHHHHHHHCCTT------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHH
T ss_pred             CCcHhHHHHHHHHHhcCCCHH------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHH
Confidence            788899999999999998763      4567788889999999999999999999999987776543     78999999


Q ss_pred             hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC--chhHHHHHHHHHHHhhcCC-HHHHHHHHhc
Q 037562          458 LLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH--EESIKKEVSWIISNITCGN-REQIQAVIDS  534 (670)
Q Consensus       458 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~  534 (670)
                      ++.+.++.++..|+.++..+...+..         .+..++..+....  ++..+......++.++..+ +.     ...
T Consensus       184 ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~  249 (355)
T 3tjz_B          184 AASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDS  249 (355)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------
T ss_pred             HhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHH
Confidence            99999999999999999999875432         2233344443321  3434433333333333333 22     223


Q ss_pred             CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhc
Q 037562          535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMN  614 (670)
Q Consensus       535 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  614 (670)
                      .+++.+...+++.++-|..+|+.++..+... ....     -..++..|..++.+++++++..|+..|..+....+..  
T Consensus       250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--  321 (355)
T 3tjz_B          250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--  321 (355)
T ss_dssp             -------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC------------
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--
Confidence            5667777888889999999999999998653 1111     1346888889999999999999999999888654432  


Q ss_pred             cCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 037562          615 TGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEI  656 (670)
Q Consensus       615 ~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~  656 (670)
                                    +.++  -..|+.+..++|..+...|+..
T Consensus       322 --------------v~~~--n~~ie~li~d~n~sI~t~Aitt  347 (355)
T 3tjz_B          322 --------------VTAC--NLDLENLVTDANRSIATLAITT  347 (355)
T ss_dssp             ------------------------------------------
T ss_pred             --------------HHHH--HHHHHHHccCCcHhHHHHHHHH
Confidence                          2221  2346777788888877776653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.88  E-value=3.5e-07  Score=99.85  Aligned_cols=291  Identities=13%  Similarity=0.066  Sum_probs=197.4

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc---CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 037562          252 NSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLM---RQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPI  328 (670)
Q Consensus       252 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~  328 (670)
                      ...+..|+..|.-+-..+ .+        +++..|-+.|.   +++ +.++.-|+.+|+.+..+...   .     ++..
T Consensus       372 ~~~k~sA~aSLGlIh~g~-~~--------~gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~---~-----~~~l  433 (963)
T 4ady_A          372 NWAKFTATASLGVIHKGN-LL--------EGKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR---D-----TTDY  433 (963)
T ss_dssp             THHHHHHHHHHHHHTSSC-TT--------THHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH---H-----HHHH
T ss_pred             hHHHHHHHHHhhhhccCc-hH--------HHHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH---H-----HHHH
Confidence            344566666666654432 11        24666666665   445 79999999999999875432   1     3567


Q ss_pred             HHHhhCCCC--------HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC
Q 037562          329 FVKLLASPS--------VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ  400 (670)
Q Consensus       329 L~~lL~~~~--------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~  400 (670)
                      |...+.+++        +.++..|+.+|+-+..+...  +.     ++..|...+ .+.+..++..|+.+|..+..+..+
T Consensus       434 L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn  505 (963)
T 4ady_A          434 LKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK  505 (963)
T ss_dssp             HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC
Confidence            777776544        67888999999997654421  11     366677777 444455666888888876444321


Q ss_pred             CChhhhhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhh
Q 037562          401 PPFNQVRPALPVLAQLI-RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIV  478 (670)
Q Consensus       401 ~~~~~~~~~i~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~  478 (670)
                            ..++..|+..+ .+.+..++..++.+|+.+....++.         ++.++..|. +.++-+|..++.+++.-.
T Consensus       506 ------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAy  570 (963)
T 4ady_A          506 ------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAY  570 (963)
T ss_dssp             ------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence                  33445555544 3557889999999999887666543         344555554 467778888888887555


Q ss_pred             cCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHh-hcCChhHHHHHHH
Q 037562          479 KGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL-QNTEFDTKKEAAW  557 (670)
Q Consensus       479 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~  557 (670)
                      .+....       ..++.|+..+.+..+..+|+.|+.+|+.+..+.++         .++.++..+ ++.++.+|..|+.
T Consensus       571 aGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAal  634 (963)
T 4ady_A          571 AGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAF  634 (963)
T ss_dssp             TTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHH
T ss_pred             cCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHH
Confidence            443321       13555556655444788999999999999776553         456666644 4789999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562          558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK  607 (670)
Q Consensus       558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  607 (670)
                      ||+.++......        .+++.|..+.++.+..|+..|+.+|+.+..
T Consensus       635 ALGli~aGn~~~--------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          635 ALGIACAGKGLQ--------SAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             HHHHHTSSSCCH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             HHHHhccCCCcH--------HHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence            999997642211        157788889999999999999999998764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.85  E-value=6.7e-07  Score=75.56  Aligned_cols=215  Identities=16%  Similarity=0.185  Sum_probs=168.8

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchh
Q 037562          280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRC  358 (670)
Q Consensus       280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~  358 (670)
                      ..++..++.+|+++- ..||.+|+.++..++...++....++     ..|+-+++ ++....-+....+++.++...|+.
T Consensus        31 ~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           31 ESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            447888999999888 59999999999999997777666553     45666654 567777778889999999777764


Q ss_pred             HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562          359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG  438 (670)
Q Consensus       359 ~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~  438 (670)
                      -..     .+|.+..-. .-.++.++.+..++|..+....|    ....+++.-+..++.++|..=+..++..++.+..+
T Consensus       105 v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          105 VKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             HHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             HHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence            332     366666665 55699999999999999998753    33466777888999999988888899999988877


Q ss_pred             ChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562          439 TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS  518 (670)
Q Consensus       439 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~  518 (670)
                      ......     -+++.+..+|.+.+.-||..|..+|.+++.-++....      ++...++-+++. +..++.....+++
T Consensus       175 ~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~-S~lv~~~V~egL~  242 (253)
T 2db0_A          175 SFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDT-SSLVNKTVKEGIS  242 (253)
T ss_dssp             THHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCS-CHHHHHHHHHHHH
T ss_pred             CccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence            554333     6889999999999999999999999999998877544      334455667777 7888888888888


Q ss_pred             Hhhc
Q 037562          519 NITC  522 (670)
Q Consensus       519 ~l~~  522 (670)
                      .++.
T Consensus       243 rl~l  246 (253)
T 2db0_A          243 RLLL  246 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.84  E-value=2.2e-08  Score=97.69  Aligned_cols=58  Identities=19%  Similarity=0.150  Sum_probs=22.8

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCK   82 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~   82 (670)
                      +|+.|.++++ +++.++......+++|++|+++++. +..+ +..+..+++|++|+++++.
T Consensus        33 ~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           33 ASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             TCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC
Confidence            4445544443 2333332222334444444444432 2232 2223334444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.81  E-value=2e-08  Score=98.98  Aligned_cols=76  Identities=12%  Similarity=0.122  Sum_probs=35.9

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|++++| +++.++.  ...+++|++|+++++. +..++ ....+++|++|++++|. ++.+   +.+..+++|++|
T Consensus        64 ~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L  134 (308)
T 1h6u_A           64 NLIGLELKDN-QITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQ-ITDV---TPLAGLSNLQVL  134 (308)
T ss_dssp             TCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSC-CCCC---GGGTTCTTCCEE
T ss_pred             CCCEEEccCC-cCCCChh--HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCC-CCCc---hhhcCCCCCCEE
Confidence            5555555554 3443333  2445555555555553 33332 23345555555555552 3332   224445555555


Q ss_pred             ccccc
Q 037562          103 EIESC  107 (670)
Q Consensus       103 ~i~~c  107 (670)
                      ++++|
T Consensus       135 ~l~~n  139 (308)
T 1h6u_A          135 YLDLN  139 (308)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            55544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.80  E-value=2.3e-08  Score=104.29  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=20.6

Q ss_pred             CCCCccEEeEecCCCccccccCC-cCCCCccceeeee
Q 037562          153 TFPSLEILVVNYCPNMKIFSGGE-LSTPNLHKVQLSR  188 (670)
Q Consensus       153 ~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~i~~  188 (670)
                      .+++|+.|+++++ ++..+|... ..+++|+.|++++
T Consensus       253 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          253 NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCC
Confidence            4566666666665 455555433 3466777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.80  E-value=4.1e-08  Score=89.73  Aligned_cols=128  Identities=23%  Similarity=0.202  Sum_probs=96.2

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      ..+|++|.+.+| .++.++.  ...+++|++|++++|.--...+..+..+++|+.|++++|. ++... +..+..+++|+
T Consensus        65 l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~-~~~l~~l~~L~  139 (197)
T 4ezg_A           65 AHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSI-LTKINTLPKVN  139 (197)
T ss_dssp             CTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBGGG-HHHHTTCSSCC
T ss_pred             CCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc-cCcHh-HHHHhhCCCCC
Confidence            348999999999 6666553  4679999999999985333356667789999999999984 33321 35567899999


Q ss_pred             eeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      +|++++|..+..+.         ....+|+|+.|.+.++. ++.+.   ....+|+|+.|++.+.+
T Consensus       140 ~L~L~~n~~i~~~~---------~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          140 SIDLSYNGAITDIM---------PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSCTBCCCCG---------GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred             EEEccCCCCccccH---------hhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence            99999998666552         23468999999999874 55543   24568999999998754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.79  E-value=3.9e-08  Score=95.96  Aligned_cols=125  Identities=16%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccc
Q 037562           44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQD  123 (670)
Q Consensus        44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~  123 (670)
                      ..+++|+.|+++++. +..++. ...+++|++|++++| +++.+   +.+..+++|++|++++|. +..+         .
T Consensus        87 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~---------~  150 (291)
T 1h6t_A           87 ANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK-ITDI---------T  150 (291)
T ss_dssp             TTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCC---------G
T ss_pred             ccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcc---------h
Confidence            344455555554442 333222 344455555555554 23332   334455555555555542 2211         1


Q ss_pred             ccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562          124 EVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD  190 (670)
Q Consensus       124 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~  190 (670)
                      ....+++|+.|.++++ .++.+..   ...+++|+.|++.+| ++..+|. ...+++|+.|++++.+
T Consensus       151 ~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             hhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence            2335677777777766 3444432   446788888888877 4666664 5567888888887643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.78  E-value=5.7e-08  Score=93.83  Aligned_cols=61  Identities=25%  Similarity=0.212  Sum_probs=41.0

Q ss_pred             ccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeeec
Q 037562          126 ITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSRW  189 (670)
Q Consensus       126 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~~  189 (670)
                      ..+++|+.|.+.++ .++.++.. ....+++|+.|++.++ +++.+|.+ ...+++|+.|++++.
T Consensus       154 ~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          154 DKLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence            34677777777765 34444432 2345788899999887 56777765 345788888888654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.77  E-value=2.4e-08  Score=109.47  Aligned_cols=198  Identities=13%  Similarity=0.058  Sum_probs=149.5

Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH-HHhcCCCCccchhHHHHHHHHhhcCC-chhh
Q 037562          408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL-VELLGHSSSSVLTPALRTIRNIVKGD-DFQT  485 (670)
Q Consensus       408 ~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~  485 (670)
                      .++| +++.|+++++..|..|+++|++++. ++...+.+...+++..+ ..+|.+++.+||..|+++|+||+... .+.+
T Consensus        35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3444 5567899999999999999999996 45556667777887765 56788899999999999999999753 5667


Q ss_pred             HHHHhCCChHHHHHhhccCC-------------c-------hhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562          486 QCIINCGALPYFLDMLVHNH-------------E-------ESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ  545 (670)
Q Consensus       486 ~~l~~~~~~~~L~~~l~~~~-------------~-------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~  545 (670)
                      ..++..|+++.|..++....             .       ..+...++.+|.+++.++.+....+.+.+.++.++..+.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            77889999999999885310             0       123456778889998888888888888899999999886


Q ss_pred             cC---ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc--cCCChHHHHHHHHHHHHHHHh
Q 037562          546 NT---EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL--LCADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       546 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll--~~~~~~v~~~a~~~l~~l~~~  608 (670)
                      +.   ..+++..|+.+|..++.. +++....+.+.+....+.-++  ...+...+..++..+.+++..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~  259 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTS  259 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhh
Confidence            33   358999999999999987 677777777766543322222  223334466777888888654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.77  E-value=2.7e-08  Score=98.06  Aligned_cols=77  Identities=22%  Similarity=0.286  Sum_probs=63.4

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|++|.+.+| +++.++.  ...+++|+.|++++| .+..+++ ...+++|++|++++|. ++.+   +.+..+++|++|
T Consensus        42 ~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L  112 (308)
T 1h6u_A           42 GITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNV---SAIAGLQSIKTL  112 (308)
T ss_dssp             TCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEE
T ss_pred             CcCEEEeeCC-CccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEE
Confidence            8999999988 5666653  467999999999998 4667766 7789999999999995 6665   467789999999


Q ss_pred             cccccc
Q 037562          103 EIESCD  108 (670)
Q Consensus       103 ~i~~c~  108 (670)
                      ++++|.
T Consensus       113 ~l~~n~  118 (308)
T 1h6u_A          113 DLTSTQ  118 (308)
T ss_dssp             ECTTSC
T ss_pred             ECCCCC
Confidence            998885

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.77  E-value=4.3e-08  Score=105.42  Aligned_cols=144  Identities=17%  Similarity=0.161  Sum_probs=97.5

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .+|+.|.+++| .+..++.  ...+++|+.|++++|. +..++ .+..+++|+.|++++|. +..+   +.+..+++|+.
T Consensus        65 ~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~  135 (605)
T 1m9s_A           65 PNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLES  135 (605)
T ss_dssp             TTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSC-CCCC---GGGGGCTTCSE
T ss_pred             CCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCC-CCCC---ccccCCCccCE
Confidence            37888888777 3555554  4578888888888874 55544 46677888888888874 4443   45677888888


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCc
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNL  181 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L  181 (670)
                      |++++|. +..+         .....+++|+.|.|+++. +..+..   ...+++|+.|++++| .+..+|. +..+++|
T Consensus       136 L~Ls~N~-l~~l---------~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L  199 (605)
T 1m9s_A          136 LYLGNNK-ITDI---------TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKN-HISDLRA-LAGLKNL  199 (605)
T ss_dssp             EECCSSC-CCCC---------GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCBCGG-GTTCTTC
T ss_pred             EECCCCc-cCCc---------hhhcccCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCC-CCCCChH-HccCCCC
Confidence            8888774 3322         123457888888888763 444433   456788888888887 4565653 4557888


Q ss_pred             cceeeeecc
Q 037562          182 HKVQLSRWD  190 (670)
Q Consensus       182 ~~l~i~~~~  190 (670)
                      +.|++++.+
T Consensus       200 ~~L~L~~N~  208 (605)
T 1m9s_A          200 DVLELFSQE  208 (605)
T ss_dssp             SEEECCSEE
T ss_pred             CEEEccCCc
Confidence            888886544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.76  E-value=4.4e-08  Score=102.12  Aligned_cols=87  Identities=15%  Similarity=0.185  Sum_probs=40.9

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|++|+++++ +++.++......+++|++|+++++ .+..+++ .+..+++|++|+++++. ++.+ +...+..+++|++
T Consensus        89 ~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~-~~~~~~~l~~L~~  164 (440)
T 3zyj_A           89 HLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESI-PSYAFNRIPSLRR  164 (440)
T ss_dssp             SCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEE-CTTTTTTCTTCCE
T ss_pred             CCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-cccc-CHHHhhhCcccCE
Confidence            5555555544 244433333344555555555554 3444443 23445555555555542 3322 1123345555555


Q ss_pred             ecccccccccee
Q 037562          102 MEIESCDKITEI  113 (670)
Q Consensus       102 L~i~~c~~l~~~  113 (670)
                      |++.+|..+..+
T Consensus       165 L~l~~~~~l~~i  176 (440)
T 3zyj_A          165 LDLGELKRLSYI  176 (440)
T ss_dssp             EECCCCTTCCEE
T ss_pred             eCCCCCCCccee
Confidence            555555544443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.76  E-value=2.7e-08  Score=100.20  Aligned_cols=145  Identities=18%  Similarity=0.166  Sum_probs=78.8

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .+|+.|++++|. ++.++.  ...+++|+.|+++++. +..+++ ...+++|++|++++|. ++.+   +.+..+++|++
T Consensus       177 ~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~-l~~~---~~~~~l~~L~~  247 (347)
T 4fmz_A          177 TDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNK-ITDL---SPLANLSQLTW  247 (347)
T ss_dssp             TTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCC---GGGTTCTTCCE
T ss_pred             CCCCEEEccCCc-cccccc--ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCc-cCCC---cchhcCCCCCE
Confidence            478888888774 554443  3566777777777763 333333 4556777777777763 3333   22556677777


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCc
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNL  181 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L  181 (670)
                      |++++|. +..+.         ....+++|+.|.+.++ +++.++.   ...+|+|+.|++++|+--...|.....+++|
T Consensus       248 L~l~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          248 LEIGTNQ-ISDIN---------AVKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             EECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             EECCCCc-cCCCh---------hHhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence            7776663 32221         1234556666666655 3333321   3345556666666554322233333345555


Q ss_pred             cceeeeec
Q 037562          182 HKVQLSRW  189 (670)
Q Consensus       182 ~~l~i~~~  189 (670)
                      +.|+++++
T Consensus       314 ~~L~L~~n  321 (347)
T 4fmz_A          314 TTLFLSQN  321 (347)
T ss_dssp             SEEECCSS
T ss_pred             CEEEccCC
Confidence            55555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.74  E-value=1.5e-08  Score=110.58  Aligned_cols=132  Identities=17%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562           45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE  124 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  124 (670)
                      .+++|+.|++++|.-....+.....+++|++|++++|.--... .+..+..+++|++|++++|. +..++       +..
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~  492 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQ-LEQIS-------WGV  492 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEEC-------TTT
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc-hHHhhccCCCCCEEECCCCc-CCccC-------hhh
Confidence            3444444444444322222233344455555555555221111 12233455555555555552 22221       112


Q ss_pred             cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCC-Cccceeeee
Q 037562          125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTP-NLHKVQLSR  188 (670)
Q Consensus       125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~-~L~~l~i~~  188 (670)
                      ...+++|+.|.++++ +++.+... ....+++|+.|++++|. ++.+|.+...+| +|+.|++++
T Consensus       493 ~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~  554 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTN  554 (606)
T ss_dssp             TTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCS
T ss_pred             hcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccC
Confidence            345677888888777 34443221 24557888888888885 778888766666 588888865

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.73  E-value=5.3e-08  Score=94.96  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=53.1

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhhhcccccc
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      .+|++|.++++ .++.+.......+++|++|+++++..+..++ ..+..+++|++|+++++. ++.+ ++..+..+++|+
T Consensus        56 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~  132 (285)
T 1ozn_A           56 RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQEL-GPGLFRGLAALQ  132 (285)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCC
T ss_pred             CCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEE-CHhHhhCCcCCC
Confidence            37888888776 4555544334567788888888776566653 345567777777777764 3332 123345677777


Q ss_pred             eecccccc
Q 037562          101 YMEIESCD  108 (670)
Q Consensus       101 ~L~i~~c~  108 (670)
                      +|+++++.
T Consensus       133 ~L~l~~n~  140 (285)
T 1ozn_A          133 YLYLQDNA  140 (285)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            77776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.72  E-value=6.6e-08  Score=101.18  Aligned_cols=81  Identities=12%  Similarity=0.147  Sum_probs=37.0

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +++.|+++++ +++.++......+++|+.|+++++. +..++ ..+..+++|++|+++++. ++.+ ++..+..+++|++
T Consensus        76 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~  151 (452)
T 3zyi_A           76 NTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVI-PSGAFEYLSKLRE  151 (452)
T ss_dssp             TCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBC-CTTTSSSCTTCCE
T ss_pred             CccEEECcCC-cCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCcc-ChhhhcccCCCCE
Confidence            5566666554 3444433333445555555555542 33333 223345555555555542 3332 1122334555555


Q ss_pred             eccccc
Q 037562          102 MEIESC  107 (670)
Q Consensus       102 L~i~~c  107 (670)
                      |+++++
T Consensus       152 L~L~~N  157 (452)
T 3zyi_A          152 LWLRNN  157 (452)
T ss_dssp             EECCSC
T ss_pred             EECCCC
Confidence            555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.72  E-value=6.8e-08  Score=97.27  Aligned_cols=79  Identities=11%  Similarity=0.185  Sum_probs=43.9

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|++|++++| +++.++.  ...+++|++|++++| .+..++ ....+++|++|++++|. +..+   +....+++|++|
T Consensus        67 ~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-i~~~---~~~~~l~~L~~L  137 (347)
T 4fmz_A           67 NLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-ISDI---SPLANLTKMYSL  137 (347)
T ss_dssp             TCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC-CCCC---GGGTTCTTCCEE
T ss_pred             CccEEEccCC-ccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc-ccCc---hhhccCCceeEE
Confidence            6777777776 4555543  355667777777666 344432 24455666666666553 3332   224455566666


Q ss_pred             cccccccc
Q 037562          103 EIESCDKI  110 (670)
Q Consensus       103 ~i~~c~~l  110 (670)
                      ++++|..+
T Consensus       138 ~l~~n~~~  145 (347)
T 4fmz_A          138 NLGANHNL  145 (347)
T ss_dssp             ECTTCTTC
T ss_pred             ECCCCCCc
Confidence            66555433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.71  E-value=1.1e-07  Score=91.83  Aligned_cols=150  Identities=19%  Similarity=0.195  Sum_probs=99.1

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|+.|.++++. ++.++  ....+++|++|++++|. +..+++. +..+++|++|++++|. ++.+ ++..+..+++|++
T Consensus        64 ~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~  137 (272)
T 3rfs_A           64 NVRYLALGGNK-LHDIS--ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSL-PDGVFDKLTNLTY  137 (272)
T ss_dssp             TCCEEECTTSC-CCCCG--GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCE
T ss_pred             CCcEEECCCCC-CCCch--hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCc-CCcc-CHHHhccCCCCCE
Confidence            77777777764 44443  23567788888888773 5555544 3567888888888873 4443 2233567888888


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCC
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPN  180 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~  180 (670)
                      |++++| .+..++.       .....+++|+.|.+.++ +++.++.. ....+++|+.|++.+|. +..+|.. ...+++
T Consensus       138 L~L~~n-~l~~~~~-------~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          138 LNLAHN-QLQSLPK-------GVFDKLTNLTELDLSYN-QLQSLPEG-VFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTS  206 (272)
T ss_dssp             EECCSS-CCCCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred             EECCCC-ccCccCH-------HHhccCccCCEEECCCC-CcCccCHH-HhcCCccCCEEECCCCc-CCccCHHHHhCCcC
Confidence            888887 3444321       12235788999998887 45555442 23467899999999885 5656554 456889


Q ss_pred             ccceeeeec
Q 037562          181 LHKVQLSRW  189 (670)
Q Consensus       181 L~~l~i~~~  189 (670)
                      |+.|++++.
T Consensus       207 L~~L~l~~N  215 (272)
T 3rfs_A          207 LQYIWLHDN  215 (272)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEEccCC
Confidence            999988654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.70  E-value=7.8e-07  Score=78.83  Aligned_cols=187  Identities=16%  Similarity=0.167  Sum_probs=149.5

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +.+..+...+..+|+.++..|+.+|.++.+.. +.......-..+++.++.++.+.+ ..+...|++++..+..+.|-..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence            45788999999999999999999999998863 233344444558999999999888 8999999999999998665555


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      +.+..  ++.++..++.++++-++..|+..++.+--..+ .+ .     ++..+..++ .+.+..++..+..++.+++..
T Consensus       111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~-~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SK-L-----VRTYINELV-VSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CH-H-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hH-H-----HHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence            55543  56889999999999999999999999932221 11 1     366777888 899999999999999999987


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG  438 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~  438 (670)
                      ....  .....++.-+-.++++.|+.++..|+.++..+...
T Consensus       181 S~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          181 SADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             CSSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             cCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            5322  22355666778899999999999999999998854

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.70  E-value=7.1e-08  Score=100.92  Aligned_cols=36  Identities=17%  Similarity=0.066  Sum_probs=23.6

Q ss_pred             cCCCCccEEeEecCCCccccccCC-cCCCCccceeeee
Q 037562          152 FTFPSLEILVVNYCPNMKIFSGGE-LSTPNLHKVQLSR  188 (670)
Q Consensus       152 ~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~i~~  188 (670)
                      ..+++|+.|++.++ ++..+|... ..+++|+.|++++
T Consensus       263 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          263 DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred             cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence            34677777777776 566666543 3467777777754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.67  E-value=5.4e-08  Score=96.01  Aligned_cols=160  Identities=14%  Similarity=0.090  Sum_probs=76.3

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC--CCccccccceeeecccccccccccchhhhccccc
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP--SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      .+|++|+++++. ++.++.. ...+++|++|+++++. +..++.  ....+++|++|++++|. +.... +..+..+++|
T Consensus        78 ~~L~~L~Ls~n~-i~~l~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L  152 (306)
T 2z66_A           78 TSLKYLDLSFNG-VITMSSN-FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSL  152 (306)
T ss_dssp             SCCCEEECCSCS-EEEEEEE-EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECS-TTTTTTCTTC
T ss_pred             cccCEEECCCCc-cccChhh-cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccc-hhhcccCcCC
Confidence            377777777663 4444432 2456666666666543 333322  23445556666665553 22111 1223445555


Q ss_pred             ceeccccccccce-ecccc----------------ccccccccccccccccccccccccccccccCCcccCCCCccEEeE
Q 037562          100 RYMEIESCDKITE-IVLVD----------------DVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVV  162 (670)
Q Consensus       100 ~~L~i~~c~~l~~-~~~~~----------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i  162 (670)
                      ++|+++++.--.. ++..-                ....+.....+++|+.|.+.++. ++.+... ....+++|+.|++
T Consensus       153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L  230 (306)
T 2z66_A          153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDY  230 (306)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCEEEC
T ss_pred             CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChh-hccCcccCCEeEC
Confidence            5555554431110 00000                00001122345666666666643 3333221 1334677778887


Q ss_pred             ecCCCccccccCCcCC-CCccceeeee
Q 037562          163 NYCPNMKIFSGGELST-PNLHKVQLSR  188 (670)
Q Consensus       163 ~~C~~l~~~p~~~~~~-~~L~~l~i~~  188 (670)
                      ++++--...|.....+ ++|+.|++++
T Consensus       231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          231 SLNHIMTSKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             TTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred             CCCCCcccCHHHHHhhhccCCEEEccC
Confidence            7775433344444445 3778777754

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.67  E-value=7.1e-06  Score=82.20  Aligned_cols=321  Identities=12%  Similarity=0.114  Sum_probs=195.3

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCC-hHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          323 HGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSP---RCRDLVLSQGA-LIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       323 ~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~-i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..++..++.+|+. .+.++.+..+..+..+...++   .....+.+... ...+........+.-.+..++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            4567888888875 778888899989998887766   33333333222 222333332333334445666666666544


Q ss_pred             CCCCChhhhhhhHH--HHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHc--CCHHHHHHhcC----CC------
Q 037562          398 KPQPPFNQVRPALP--VLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEA--GVYPRLVELLG----HS------  462 (670)
Q Consensus       398 ~~~~~~~~~~~~i~--~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~i~~L~~lL~----~~------  462 (670)
                      .+. ........+.  -+...|.. ++.+.+.-++.++..+..... ....+.+.  +.++.++..+.    +.      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322 3333344444  34455554 244556678888888876533 44445443  23455543322    11      


Q ss_pred             -------CccchhHHHHHHHHhhcCCchhhHHHHhCCCh--HHHHHhhccCCchhHHHHHHHHHHHhhcCCH----HHHH
Q 037562          463 -------SSSVLTPALRTIRNIVKGDDFQTQCIINCGAL--PYFLDMLVHNHEESIKKEVSWIISNITCGNR----EQIQ  529 (670)
Q Consensus       463 -------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~--~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~----~~~~  529 (670)
                             ..+++..++.+++-++... .....+...++.  +.|+.+++......+-+-+..++.|+....+    ....
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   1245788999999999844 455556555543  5677778776578899999999999987542    2223


Q ss_pred             H-HHhcCChHHHHHHhhc---CChhHHHHHHHHHHHh-------c--------------CCCCHHH-HHHHHHcC-----
Q 037562          530 A-VIDSGLIGPIVNLLQN---TEFDTKKEAAWAISNA-------T--------------KFGTHEQ-IKHLVREG-----  578 (670)
Q Consensus       530 ~-l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l-------~--------------~~~~~~~-~~~l~~~~-----  578 (670)
                      . ++..++ +.++..|..   .|+++....-.....+       +              .. +|.+ ...|+.++     
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W-SP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc-CCCccchhHHHHHHHHHH
Confidence            2 333344 445555553   3555544333222222       1              11 1111 12333322     


Q ss_pred             -----CcHHHHhhccC----------CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc
Q 037562          579 -----CVKPLCDLLLC----------ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS  643 (670)
Q Consensus       579 -----~i~~L~~ll~~----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~  643 (670)
                           ++..|++++++          .|+.+...|+.=++.+++..+.             .+..+++.|+-+.+-+|++
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-------------gr~i~~~lg~K~~VM~Lm~  457 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIMELLN  457 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHHHTS
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-------------hhHHHHHcCcHHHHHHHhc
Confidence                 36778888863          4677888888889998887664             3567889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 037562          644 HDDNGISEKAVEILETYW  661 (670)
Q Consensus       644 ~~~~~v~~~a~~~l~~~~  661 (670)
                      |+|++|+..|...++++.
T Consensus       458 h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          458 HSDSRVKYEALKATQAII  475 (480)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999998764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.67  E-value=1.9e-07  Score=91.01  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=73.7

Q ss_pred             cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562           45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE  124 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  124 (670)
                      .+++|+.|+++++ .+..++.....+++|+.|+++++ +++.+ ++..+..+++|++|+++++. ++.++.       ..
T Consensus        75 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~  143 (290)
T 1p9a_G           75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLPP-------GL  143 (290)
T ss_dssp             CCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCT-------TT
T ss_pred             CCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccCh-------hh
Confidence            4445555555444 23444444445555666665554 23332 12234456666666666552 332221       11


Q ss_pred             cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562          125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      ...+++|+.|.+.+. +++.++.+ ....+++|+.|++.++ +++.+|.+....++|+.|++++
T Consensus       144 ~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          144 LTPTPKLEKLSLANN-NLTELPAG-LLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             TTTCTTCCEEECTTS-CCSCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred             cccccCCCEEECCCC-cCCccCHH-HhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCC
Confidence            234677777777765 45555543 2345788888888876 4678888877778888887754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.66  E-value=2.8e-08  Score=88.26  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=43.5

Q ss_pred             cccEEEeccCcCcc--cccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562           23 EVKISEAYNCYRLE--NILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        23 ~L~~L~i~~c~~l~--~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      +|+.|.+.+|. ++  .++.. ...+++|+.|++++|. +..+ ..+..+++|++|++++|. +... .+.....+++|+
T Consensus        25 ~L~~L~l~~n~-l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~   98 (168)
T 2ell_A           25 AVRELVLDNCK-SNDGKIEGL-TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLT   98 (168)
T ss_dssp             SCSEEECCSCB-CBTTBCSSC-CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCC
T ss_pred             cCCEEECCCCC-CChhhHHHH-HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCC
Confidence            56666666664 43  33332 2455666666666664 4444 444556666666666663 2221 123334466666


Q ss_pred             eeccccc
Q 037562          101 YMEIESC  107 (670)
Q Consensus       101 ~L~i~~c  107 (670)
                      +|++++|
T Consensus        99 ~L~Ls~N  105 (168)
T 2ell_A           99 HLNLSGN  105 (168)
T ss_dssp             EEECBSS
T ss_pred             EEeccCC
Confidence            6666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.66  E-value=1e-07  Score=93.08  Aligned_cols=143  Identities=18%  Similarity=0.231  Sum_probs=109.7

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|.+.+| +++.++.  ...+++|+.|++++|. +..+++ ...+++|+.|+++++. ++.+   +.+..+++|++|
T Consensus        47 ~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L  117 (291)
T 1h6t_A           47 SIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDL---SSLKDLKKLKSL  117 (291)
T ss_dssp             TCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCG---GGGTTCTTCCEE
T ss_pred             cccEEEccCC-CcccChh--HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCC---hhhccCCCCCEE
Confidence            8999999988 4666643  4678999999999984 666665 6788999999999984 5554   457889999999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH  182 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~  182 (670)
                      ++++|. +..+.         ....+++|+.|.++++ +++.+.   ....+++|+.|++++| ++..++. ...+++|+
T Consensus       118 ~L~~n~-i~~~~---------~l~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~  181 (291)
T 1h6t_A          118 SLEHNG-ISDIN---------GLVHLPQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ  181 (291)
T ss_dssp             ECTTSC-CCCCG---------GGGGCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred             ECCCCc-CCCCh---------hhcCCCCCCEEEccCC-cCCcch---hhccCCCCCEEEccCC-ccccchh-hcCCCccC
Confidence            999884 44331         2346899999999987 345442   3557899999999998 4666665 66789999


Q ss_pred             ceeeeecc
Q 037562          183 KVQLSRWD  190 (670)
Q Consensus       183 ~l~i~~~~  190 (670)
                      .|++++..
T Consensus       182 ~L~L~~N~  189 (291)
T 1h6t_A          182 NLYLSKNH  189 (291)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            99997653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.64  E-value=1.2e-07  Score=97.00  Aligned_cols=62  Identities=18%  Similarity=0.166  Sum_probs=36.0

Q ss_pred             cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562          125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      ...+|+|+.|.++++. ++.+... ....+++|+.|++.+| +++.+|.....+|+|+.|++++.
T Consensus       244 l~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             GGGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS
T ss_pred             HcCCCCccEEECCCCc-CCCcChh-HccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC
Confidence            3456777777777653 3333221 2344667777777765 45556665555667777766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.64  E-value=3.5e-08  Score=99.57  Aligned_cols=156  Identities=17%  Similarity=0.079  Sum_probs=111.5

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|++|+++++. ++.++......+++|+.|+++++ .+..+++ .+..+++|++|+++++ +++.+ +...+..+++|++
T Consensus        53 ~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~  128 (353)
T 2z80_A           53 AVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNL-SSSWFKPLSSLTF  128 (353)
T ss_dssp             TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSC-CHHHHTTCTTCSE
T ss_pred             cCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcC-CHhHhCCCccCCE
Confidence            89999998874 77777654578899999999888 4666654 4677899999999987 45554 2233678999999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCc
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNL  181 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L  181 (670)
                      |+++++. ++.++.      ......+++|+.|.+.++..++.+... ....+++|+.|++.+|.--...|.....+++|
T Consensus       129 L~L~~n~-l~~l~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          129 LNLLGNP-YKTLGE------TSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             EECTTCC-CSSSCS------SCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             EECCCCC-CcccCc------hhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence            9998874 433321      012345888999999988777776543 24567889999998886433346666677888


Q ss_pred             cceeeeecc
Q 037562          182 HKVQLSRWD  190 (670)
Q Consensus       182 ~~l~i~~~~  190 (670)
                      ++|++++..
T Consensus       201 ~~L~l~~n~  209 (353)
T 2z80_A          201 SHLILHMKQ  209 (353)
T ss_dssp             EEEEEECSC
T ss_pred             CeecCCCCc
Confidence            888876543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.63  E-value=2.4e-07  Score=88.26  Aligned_cols=153  Identities=14%  Similarity=0.119  Sum_probs=108.7

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +++.|.+.++. +..++......+++|++|+++++. +..+++. +..+++|+.|+++++. ++.+ ++..+..+++|++
T Consensus        36 ~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~  111 (251)
T 3m19_A           36 DTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ-LASL-PLGVFDHLTQLDK  111 (251)
T ss_dssp             TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCE
T ss_pred             CCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc-cccc-ChhHhcccCCCCE
Confidence            78889888774 555554445678899999998874 5555543 4678899999999874 4443 2344578899999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc-CCcCCCC
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG-GELSTPN  180 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~-~~~~~~~  180 (670)
                      |+++++ .++.++.       .....+++|+.|.+.++ +++.++.+ ....+++|+.|++.++ ++..+|. ....+++
T Consensus       112 L~L~~N-~l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          112 LYLGGN-QLKSLPS-------GVFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGK  180 (251)
T ss_dssp             EECCSS-CCCCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred             EEcCCC-cCCCcCh-------hHhccCCcccEEECcCC-cCCccCHH-HcCcCcCCCEEECCCC-cCCccCHHHHhCCCC
Confidence            999887 3544431       12235789999999887 66666553 2456799999999987 4666665 3456789


Q ss_pred             ccceeeeecc
Q 037562          181 LHKVQLSRWD  190 (670)
Q Consensus       181 L~~l~i~~~~  190 (670)
                      |+.|++++.+
T Consensus       181 L~~L~l~~N~  190 (251)
T 3m19_A          181 LQTITLFGNQ  190 (251)
T ss_dssp             CCEEECCSCC
T ss_pred             CCEEEeeCCc
Confidence            9999886543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.63  E-value=1.1e-07  Score=94.36  Aligned_cols=129  Identities=12%  Similarity=0.072  Sum_probs=81.0

Q ss_pred             CCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562           46 MNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE  124 (670)
Q Consensus        46 ~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  124 (670)
                      +++|+.|+++++. +..+++ ....+++|+.|+++++ .+..+.+......+++|++|+++++. ++.+.         .
T Consensus       119 ~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---------~  186 (317)
T 3o53_A          119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVK---------G  186 (317)
T ss_dssp             CSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE---------C
T ss_pred             cCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Ccccc---------c
Confidence            5566666666653 333322 3445677777777776 34443222223456777777777764 33331         1


Q ss_pred             cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562          125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD  190 (670)
Q Consensus       125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~  190 (670)
                      ...+++|+.|.++++ +++.++..  ...+++|+.|+++++ +++.+|.....+++|+.|++++.+
T Consensus       187 ~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          187 QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence            123788888888876 45555442  456788999999887 577788877778888888886544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.63  E-value=1.9e-07  Score=93.19  Aligned_cols=160  Identities=18%  Similarity=0.159  Sum_probs=81.9

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccc------------
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVL------------   88 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~------------   88 (670)
                      ..+|++|.++++ +++.+.......+++|++|+++++. +..++...  +++|++|+++++. ++.+.            
T Consensus        75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~--~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  149 (330)
T 1xku_A           75 LKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIV  149 (330)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCE
T ss_pred             CCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh--cccccEEECCCCc-ccccCHhHhcCCccccE
Confidence            348888888877 3555543334667888888887764 55555432  2556666665542 22211            


Q ss_pred             -------------cchhhhcccccceeccccccccceecc-----------ccc---ccccccccccccccccccccccc
Q 037562           89 -------------TSSIAKTLVRLRYMEIESCDKITEIVL-----------VDD---VVAQDEVITFRELKELNLLQMQN  141 (670)
Q Consensus        89 -------------~~~~~~~l~~L~~L~i~~c~~l~~~~~-----------~~~---~~~~~~~~~~~~L~~L~l~~~~~  141 (670)
                                   .+..+..+++|++|++.++. ++.++.           ...   .........+++|+.|.+.++. 
T Consensus       150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-  227 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-  227 (330)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-
T ss_pred             EECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-
Confidence                         11223344455555544432 111110           000   0001112234455555555432 


Q ss_pred             ccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562          142 LISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       142 l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      ++.+... ....+++|+.|++++| ++..+|.+...+++|+.|++++.
T Consensus       228 l~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          228 ISAVDNG-SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             CCEECTT-TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred             CceeChh-hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC
Confidence            2222221 2335677777777777 46677777767777887777643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.63  E-value=2.5e-07  Score=87.59  Aligned_cols=184  Identities=15%  Similarity=0.209  Sum_probs=141.8

Q ss_pred             HHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 037562          370 PLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR-SNDEEVLTDACWALSYLSDGTNDKVQAVIE  448 (670)
Q Consensus       370 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  448 (670)
                      .+...+ .+.+...|+.|+..|..+....+.........+++.+...+. +.+..++..++.+++.++..-.........
T Consensus        19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~   97 (242)
T 2qk2_A           19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS   97 (242)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            466677 788899999999999999876322111223577888999995 889999999999999998543322222222


Q ss_pred             cCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHH
Q 037562          449 AGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQ  527 (670)
Q Consensus       449 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~  527 (670)
                       .+++.++..+.+.+..+|..|..++..++....  ..     .+++.+...+++. ++.+|..++..++.+... .+..
T Consensus        98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence             588999999999999999999999999987432  11     2577888999988 999999999999997553 3331


Q ss_pred             --HHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562          528 --IQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       528 --~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  565 (670)
                        ...+  ..++|.++.++.+.++++|..|..+++.++..
T Consensus       169 ~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          169 LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence              2222  24889999999999999999999999999864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.62  E-value=1.9e-07  Score=101.83  Aligned_cols=82  Identities=16%  Similarity=0.164  Sum_probs=45.0

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccc
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      .+|++|+++++ +++.+|.. ...+++|++|++++|. +..+ +.....+++|++|++++|.....+ +...+..+++|+
T Consensus       278 ~~L~~L~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~  353 (606)
T 3t6q_A          278 SGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLR  353 (606)
T ss_dssp             TTCSEEECTTS-CCSCCCSS-CCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCC
T ss_pred             cCCCEEeccCC-ccCCCChh-hcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCccccc-chhhhhccCcCC
Confidence            37777777776 45555543 3556677777777664 3333 334455666666666666432222 112244555555


Q ss_pred             eeccccc
Q 037562          101 YMEIESC  107 (670)
Q Consensus       101 ~L~i~~c  107 (670)
                      +|+++++
T Consensus       354 ~L~l~~n  360 (606)
T 3t6q_A          354 ELDLSHD  360 (606)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            5555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.61  E-value=2.5e-07  Score=89.23  Aligned_cols=152  Identities=18%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|+.|.++++. ++.++......+++|++|+++++. +..++... ..+++|++|+++++. ++.+ ++..+..+++|++
T Consensus        38 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~  113 (270)
T 2o6q_A           38 DTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQAL-PIGVFDQLVNLAE  113 (270)
T ss_dssp             TCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCC-CTTTTTTCSSCCE
T ss_pred             CCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcC-CHhHcccccCCCE
Confidence            68888887763 666665444677888888888764 55665543 567888888888773 4443 2234567888888


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCC
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPN  180 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~  180 (670)
                      |+++++. ++.+.       ......+++|++|.+.++ .++.++.+ ....+++|+.|++.++ ++..+|.. +..+++
T Consensus       114 L~l~~n~-l~~~~-------~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          114 LRLDRNQ-LKSLP-------PRVFDSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNN-QLKRVPEGAFDKLTE  182 (270)
T ss_dssp             EECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred             EECCCCc-cCeeC-------HHHhCcCcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCC-cCcEeChhHhccCCC
Confidence            8888764 33322       112245788999988876 46555543 2346789999999887 46666654 445789


Q ss_pred             ccceeeeec
Q 037562          181 LHKVQLSRW  189 (670)
Q Consensus       181 L~~l~i~~~  189 (670)
                      |+.|++++.
T Consensus       183 L~~L~L~~N  191 (270)
T 2o6q_A          183 LKTLKLDNN  191 (270)
T ss_dssp             CCEEECCSS
T ss_pred             cCEEECCCC
Confidence            999988654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.60  E-value=1.6e-07  Score=94.62  Aligned_cols=141  Identities=13%  Similarity=0.102  Sum_probs=80.9

Q ss_pred             CcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562           34 RLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE  112 (670)
Q Consensus        34 ~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  112 (670)
                      +++.+|..   ..++|++|+++++. +..+++ .+..+++|++|+++++ +++.+. +..+..+++|++|+++++. ++.
T Consensus        42 ~l~~iP~~---~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~  114 (353)
T 2z80_A           42 SLNSIPSG---LTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-GINTIE-EDSFSSLGSLEHLDLSYNY-LSN  114 (353)
T ss_dssp             TCSSCCTT---CCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CSS
T ss_pred             Cccccccc---ccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-ccCccC-HhhcCCCCCCCEEECCCCc-CCc
Confidence            45555542   34577777777664 555554 4556777777777776 444432 2335567777777777663 333


Q ss_pred             eccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccc-cCCcCCCCccceeeeec
Q 037562          113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFS-GGELSTPNLHKVQLSRW  189 (670)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p-~~~~~~~~L~~l~i~~~  189 (670)
                      ++.       .....+++|++|.+.++ .++.++.......+++|+.|++.+|..+..++ .....+++|++|++++.
T Consensus       115 ~~~-------~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          115 LSS-------SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             CCH-------HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             CCH-------hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            221       11234667777777665 34444432234456777777777776666554 33445677777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.59  E-value=2.8e-07  Score=89.82  Aligned_cols=150  Identities=21%  Similarity=0.220  Sum_probs=108.5

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +++.|.++++. ++.++......+++|+.|+++++. +..++.. ..+++|+.|+++++ .++.+  +.....+++|++|
T Consensus        32 ~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L  105 (290)
T 1p9a_G           32 DTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHN-QLQSL--PLLGQTLPALTVL  105 (290)
T ss_dssp             TCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSS-CCSSC--CCCTTTCTTCCEE
T ss_pred             CCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCC-cCCcC--chhhccCCCCCEE
Confidence            78888888774 666654445678899999998874 6666654 67889999999887 45554  2345678999999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCC-cCCCCc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE-LSTPNL  181 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L  181 (670)
                      +++++. ++.++       ......+++|+.|.+.++ +++.++.+ ....+++|+.|++.++ +++.+|.+. ..+++|
T Consensus       106 ~l~~N~-l~~l~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G          106 DVSFNR-LTSLP-------LGALRGLGELQELYLKGN-ELKTLPPG-LLTPTPKLEKLSLANN-NLTELPAGLLNGLENL  174 (290)
T ss_dssp             ECCSSC-CCCCC-------SSTTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTC
T ss_pred             ECCCCc-CcccC-------HHHHcCCCCCCEEECCCC-CCCccChh-hcccccCCCEEECCCC-cCCccCHHHhcCcCCC
Confidence            998874 44332       122345789999999886 56666553 2346799999999987 578888765 458899


Q ss_pred             cceeeeec
Q 037562          182 HKVQLSRW  189 (670)
Q Consensus       182 ~~l~i~~~  189 (670)
                      +.|++++.
T Consensus       175 ~~L~L~~N  182 (290)
T 1p9a_G          175 DTLLLQEN  182 (290)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            99988654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.59  E-value=2.6e-07  Score=94.65  Aligned_cols=38  Identities=18%  Similarity=0.242  Sum_probs=24.2

Q ss_pred             cCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562          152 FTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       152 ~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      ..+|+|+.|++.++.--...|.....+++|+.|++++.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence            35677777777777432333555556778888877654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.59  E-value=2.1e-07  Score=100.97  Aligned_cols=81  Identities=14%  Similarity=0.079  Sum_probs=38.5

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|++|.++++. ++.++......+++|+.|++++| .+..+|+.. ..+++|++|++++| .+..+ ++..+..+++|++
T Consensus       100 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~  175 (597)
T 3oja_B          100 TIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQN  175 (597)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBC-CTTTTTTCTTCCE
T ss_pred             CCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCC-ChhhhhcCCcCcE
Confidence            45555555442 44443332344555555555555 244444432 44555666666555 22332 1223445556666


Q ss_pred             eccccc
Q 037562          102 MEIESC  107 (670)
Q Consensus       102 L~i~~c  107 (670)
                      |+++++
T Consensus       176 L~L~~N  181 (597)
T 3oja_B          176 LQLSSN  181 (597)
T ss_dssp             EECTTS
T ss_pred             EECcCC
Confidence            655554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.59  E-value=2.2e-07  Score=98.02  Aligned_cols=161  Identities=17%  Similarity=0.170  Sum_probs=79.7

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccc
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      .+|++|.+.++ .++.+.......+++|+.|+++++. +..++.. +..+++|++|+++++. +..+. +..+..+++|+
T Consensus        56 ~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~  131 (477)
T 2id5_A           56 PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENK-IVILL-DYMFQDLYNLK  131 (477)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCC
T ss_pred             CCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCc-cccCC-hhHccccccCC
Confidence            37888888776 4555543334567777777777764 5555543 3456777777777663 22221 22344566666


Q ss_pred             eeccccccccceecc--------------ccc---cccccccccccccccccccccccccccccCCcccCCCCccEEeEe
Q 037562          101 YMEIESCDKITEIVL--------------VDD---VVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVN  163 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~--------------~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~  163 (670)
                      +|++.++. +..+..              ...   .........+++|+.|.+.++. ++.+... ....+++|+.|++.
T Consensus       132 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~l~  208 (477)
T 2id5_A          132 SLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDY-SFKRLYRLKVLEIS  208 (477)
T ss_dssp             EEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTT-CSCSCTTCCEEEEE
T ss_pred             EEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChh-hcccCcccceeeCC
Confidence            66665542 111110              000   0000011223444444444332 1222111 23345666666666


Q ss_pred             cCCCccccccCCcCCCCccceeeeec
Q 037562          164 YCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       164 ~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      +|+.+..+|......++|++|++++.
T Consensus       209 ~~~~~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          209 HWPYLDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             CCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred             CCccccccCcccccCccccEEECcCC
Confidence            66666666655544455666655443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.58  E-value=1.9e-07  Score=101.28  Aligned_cols=59  Identities=14%  Similarity=0.006  Sum_probs=43.9

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeeccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHC   81 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c   81 (670)
                      ..+|++|.++++ .++.++......+++|+.|++++|. +..+++ .+..+++|+.|+++++
T Consensus       122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC
Confidence            348999999888 5777776544678899999998885 555544 4567788888888877

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.57  E-value=1.3e-07  Score=93.49  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             cccEEEeccCcCcc---cccccccccCCCCcEEEEecCCCCc-cccCCCccccccceeeecccccccccccchhhhcccc
Q 037562           23 EVKISEAYNCYRLE---NILIEESSVMNNLVILCVHCCDHLI-NLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVR   98 (670)
Q Consensus        23 ~L~~L~i~~c~~l~---~~~~~~~~~~~~L~~L~i~~c~~l~-~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~   98 (670)
                      +++.|++.++. +.   .++. ....+++|++|+++++.++. .+|..+..+++|++|+++++.--..+  +..+..+++
T Consensus        51 ~l~~L~L~~~~-l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~  126 (313)
T 1ogq_A           51 RVNNLDLSGLN-LPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--PDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCC-CSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC--CGGGGGCTT
T ss_pred             eEEEEECCCCC-ccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC--CHHHhCCCC
Confidence            56666666553 32   2332 23456666666666544443 33444455566666666655321111  123445555


Q ss_pred             cceeccccc
Q 037562           99 LRYMEIESC  107 (670)
Q Consensus        99 L~~L~i~~c  107 (670)
                      |++|+++++
T Consensus       127 L~~L~Ls~N  135 (313)
T 1ogq_A          127 LVTLDFSYN  135 (313)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEeCCCC
Confidence            555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.57  E-value=1.1e-07  Score=102.21  Aligned_cols=143  Identities=18%  Similarity=0.229  Sum_probs=108.9

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|.+.+|. +..++.  ...+++|+.|++++|. +..+++ +..+++|+.|++++| .+..+   +.+..+++|+.|
T Consensus        44 ~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L  114 (605)
T 1m9s_A           44 SIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDL---SSLKDLKKLKSL  114 (605)
T ss_dssp             TCCCCBCTTCC-CCCCTT--GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCC---TTSTTCTTCCEE
T ss_pred             CCCEEECcCCC-CCCChH--HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCC---hhhccCCCCCEE
Confidence            78888888774 666553  4679999999999985 666665 678999999999998 45554   567789999999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH  182 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~  182 (670)
                      ++++|. +..+.         ....+|+|+.|.|+++ .++.+.   ....+++|+.|++++|. +..++. +..+++|+
T Consensus       115 ~Ls~N~-l~~l~---------~l~~l~~L~~L~Ls~N-~l~~l~---~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~  178 (605)
T 1m9s_A          115 SLEHNG-ISDIN---------GLVHLPQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQ  178 (605)
T ss_dssp             ECTTSC-CCCCG---------GGGGCTTCSEEECCSS-CCCCCG---GGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred             EecCCC-CCCCc---------cccCCCccCEEECCCC-ccCCch---hhcccCCCCEEECcCCc-CCCchh-hccCCCCC
Confidence            999885 33331         2456899999999987 355542   35678999999999985 555554 66789999


Q ss_pred             ceeeeecc
Q 037562          183 KVQLSRWD  190 (670)
Q Consensus       183 ~l~i~~~~  190 (670)
                      .|++++..
T Consensus       179 ~L~Ls~N~  186 (605)
T 1m9s_A          179 NLYLSKNH  186 (605)
T ss_dssp             EEECCSSC
T ss_pred             EEECcCCC
Confidence            99997654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.56  E-value=1.2e-07  Score=103.56  Aligned_cols=162  Identities=16%  Similarity=0.047  Sum_probs=82.4

Q ss_pred             cccEEEeccCcCccccc--ccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562           23 EVKISEAYNCYRLENIL--IEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~--~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      +|+.|+++++. ++.+.  ......+++|+.|++++|. +..++..+..+++|+.|++++|.- ....+...+..+++|+
T Consensus       351 ~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          351 SLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             TCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEE-ESTTTTTTTTTCTTCC
T ss_pred             CCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCcc-CCccChhhhhccccCC
Confidence            67777777663 33321  1112456677777776664 445555555566666666666532 2221112344555666


Q ss_pred             eeccccccccceeccc-------------c---cc-ccccccccccccccccccccccccccccCCcccCCCCccEEeEe
Q 037562          101 YMEIESCDKITEIVLV-------------D---DV-VAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVN  163 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~~-------------~---~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~  163 (670)
                      +|++++|.-....+..             .   .+ ..+.....+++|+.|.++++ +++.+... ....+++|+.|+++
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMS  505 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECC
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChh-hhcccccCCEEECC
Confidence            6655555421111000             0   00 00112234566777777666 33333321 23456777777777


Q ss_pred             cCCCccccccCCcCCCCccceeeeec
Q 037562          164 YCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       164 ~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      +|.--...|.....+++|+.|++++.
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCC
Confidence            77433333666666777777777544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.56  E-value=3.6e-07  Score=95.97  Aligned_cols=145  Identities=15%  Similarity=0.172  Sum_probs=74.6

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccccccccccc-------------
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLT-------------   89 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-------------   89 (670)
                      +|+.|.+++|. ++.++.  ...+++|+.|++++|. +..+++ ...+++|+.|++++|. +..+.+             
T Consensus       222 ~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~  295 (466)
T 1o6v_A          222 NLDELSLNGNQ-LKDIGT--LASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELN  295 (466)
T ss_dssp             TCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECC
T ss_pred             CCCEEECCCCC-cccchh--hhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcC
Confidence            67777777663 444322  2455666666666553 223322 3344555555555442 222200             


Q ss_pred             ------chhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEe
Q 037562           90 ------SSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVN  163 (670)
Q Consensus        90 ------~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~  163 (670)
                            .+.+..+++|++|++++|. +..+.         ....+++|+.|.+.++ .++.+.   ....+++|+.|++.
T Consensus       296 ~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~  361 (466)
T 1o6v_A          296 ENQLEDISPISNLKNLTYLTLYFNN-ISDIS---------PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAG  361 (466)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSC-CSCCG---------GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECC
T ss_pred             CCcccCchhhcCCCCCCEEECcCCc-CCCch---------hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCC
Confidence                  0123344555555554442 22111         1235677777777766 444442   24467788888888


Q ss_pred             cCCCccccccCCcCCCCccceeeeec
Q 037562          164 YCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       164 ~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      +|+--...|  ...+++|+.|++++.
T Consensus       362 ~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          362 HNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             SSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             CCccCccch--hhcCCCCCEEeccCC
Confidence            775433333  455777888877654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.55  E-value=1.7e-07  Score=88.81  Aligned_cols=185  Identities=14%  Similarity=0.166  Sum_probs=139.9

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH-HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhh
Q 037562          327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR-DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ  405 (670)
Q Consensus       327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  405 (670)
                      +.+.+.+.+.+...|..|+..|..++...+... ...  ...++.+...+.++.+..++..|+.++..++..-...-...
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            457788889999999999999999985422210 000  12356666777447888999999999999996532222334


Q ss_pred             hhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCC-chh
Q 037562          406 VRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD-DFQ  484 (670)
Q Consensus       406 ~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~  484 (670)
                      ...++|.++..+.+.+..++..+..++..+.....  ..     .+++.+...+++.++.+|..++..|+.+.... +..
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            46788999999999999999999999999986543  11     36678889999999999999999999976543 221


Q ss_pred             -hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          485 -TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       485 -~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                       ....+. .+++.+..++.+. ++++|..|..+++.++.
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence             222222 5789999999988 99999999999999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.54  E-value=4e-07  Score=95.61  Aligned_cols=77  Identities=19%  Similarity=0.248  Sum_probs=50.6

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|++|++++|. ++.++.  ...+++|++|++++|. +..+++ ...+++|++|++++| +++.+   +.+..+++|++|
T Consensus        69 ~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~---~~~~~l~~L~~L  139 (466)
T 1o6v_A           69 NLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNN-QITDI---DPLKNLTNLNRL  139 (466)
T ss_dssp             TCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCC---GGGTTCTTCSEE
T ss_pred             CCCEEECCCCc-cCCchh--hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCC-CCCCC---hHHcCCCCCCEE
Confidence            77777777763 555543  3567777777777764 444444 566777888888777 44444   335677788888


Q ss_pred             cccccc
Q 037562          103 EIESCD  108 (670)
Q Consensus       103 ~i~~c~  108 (670)
                      ++++|.
T Consensus       140 ~l~~n~  145 (466)
T 1o6v_A          140 ELSSNT  145 (466)
T ss_dssp             EEEEEE
T ss_pred             ECCCCc
Confidence            777664

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.53  E-value=9.9e-06  Score=81.16  Aligned_cols=323  Identities=12%  Similarity=0.097  Sum_probs=196.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHHHhCCChH-HHHH-hhCCCCHHHHHHHHHHHHHhhCCC
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS---ENTKVVIDHGAVP-IFVK-LLASPSVDVRKQTVWALGNVAGDS  355 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~-~L~~-lL~~~~~~v~~~a~~~L~~l~~~~  355 (670)
                      ..+..++++|......++...++..+..+...++   .....+.+..-.. .+.. .+..++.-....+..++..++...
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            4678899999876658999999999999888665   4444444443222 1232 333344445556666656665333


Q ss_pred             chhHHHHHhcCChH--HHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh--hhhHHHHHHhhcc------------
Q 037562          356 PRCRDLVLSQGALI--PLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV--RPALPVLAQLIRS------------  419 (670)
Q Consensus       356 ~~~~~~i~~~~~i~--~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~lL~~------------  419 (670)
                      +...+.+..  .+.  -++..+....+.+.+..++.+|..+...+..+.....  ...+|.++.++..            
T Consensus       157 ~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~  234 (480)
T 1ho8_A          157 LHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  234 (480)
T ss_dssp             TCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             CccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence            221111110  122  3555553323345566788888888876533332221  2345666543331            


Q ss_pred             ---C--ChhHHHHHHHHHHHhccCChHHHHHHHHcCCH--HHHHHhcCC-CCccchhHHHHHHHHhhcCCch----hhH-
Q 037562          420 ---N--DEEVLTDACWALSYLSDGTNDKVQAVIEAGVY--PRLVELLGH-SSSSVLTPALRTIRNIVKGDDF----QTQ-  486 (670)
Q Consensus       420 ---~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i--~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~----~~~-  486 (670)
                         +  ..+++..++.|++-++...+ ....+...++.  ..++..++. ..+++.+-++.++.|+....+.    ... 
T Consensus       235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~  313 (480)
T 1ho8_A          235 TNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  313 (480)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence               1  25678889999999986544 44545554432  455565654 5677888999999999876521    122 


Q ss_pred             HHHhCCChHHHHHhhccCC--chhHHHHHHHHHHHhhc------CCHHHHH------------------------HHHhc
Q 037562          487 CIINCGALPYFLDMLVHNH--EESIKKEVSWIISNITC------GNREQIQ------------------------AVIDS  534 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~--~~~v~~~a~~~L~~l~~------~~~~~~~------------------------~l~~~  534 (670)
                      .++..++ ..+++.|....  |+++....-...-.+..      .-+++..                        .+.+.
T Consensus       314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~  392 (480)
T 1ho8_A          314 LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  392 (480)
T ss_dssp             HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence            2323344 44555554332  56555443332222211      0111111                        12221


Q ss_pred             --CChHHHHHHhhc----------CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHH
Q 037562          535 --GLIGPIVNLLQN----------TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGL  602 (670)
Q Consensus       535 --~~i~~L~~ll~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l  602 (670)
                        .++..|++++++          .|+.+..-||.-++.++.+ .|..+..+-+.|+-+.+++++.++|++|+..|+.|+
T Consensus       393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av  471 (480)
T 1ho8_A          393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT  471 (480)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence              257889999973          3688899999999999988 677777777889999999999999999999999999


Q ss_pred             HHHHHh
Q 037562          603 ENILKV  608 (670)
Q Consensus       603 ~~l~~~  608 (670)
                      ..++..
T Consensus       472 Qklm~~  477 (480)
T 1ho8_A          472 QAIIGY  477 (480)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.52  E-value=5.5e-07  Score=87.24  Aligned_cols=154  Identities=17%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhhhcccccc
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      .+|++|+++++ +++.++......+++|++|+++++. +..++ ..+..+++|++|++.++. +..+. ...+..+++|+
T Consensus        52 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~  127 (276)
T 2z62_A           52 PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLE-NFPIGHLKTLK  127 (276)
T ss_dssp             TTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCST-TCCCTTCTTCC
T ss_pred             cCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccC-chhcccCCCCC
Confidence            47888888887 5666655444667788888887764 44444 334556777777777663 23321 11245566666


Q ss_pred             eeccccccccceeccccccccccccccccccccccccccc---------------------------cccccccCCcccC
Q 037562          101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQ---------------------------NLISFCSGNCAFT  153 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------------~l~~~~~~~~~~~  153 (670)
                      +|+++++. +..+.      .+.....+++|+.|.+.++.                           .++.++.+  ...
T Consensus       128 ~L~l~~n~-l~~~~------l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~--~~~  198 (276)
T 2z62_A          128 ELNVAHNL-IQSFK------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--AFK  198 (276)
T ss_dssp             EEECCSSC-CCCCC------CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT--SSC
T ss_pred             EEECcCCc-cceec------CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc--ccC
Confidence            66666553 11110      01111234444444444331                           12222221  234


Q ss_pred             CCCccEEeEecCCCccccccCC-cCCCCccceeeeec
Q 037562          154 FPSLEILVVNYCPNMKIFSGGE-LSTPNLHKVQLSRW  189 (670)
Q Consensus       154 ~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~i~~~  189 (670)
                      .++|+.|++.++. ++.+|... ..+++|+.|++++.
T Consensus       199 ~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          199 EIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             SCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred             CCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence            4589999999885 77887764 56899999988643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.52  E-value=2.1e-07  Score=91.80  Aligned_cols=130  Identities=16%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             CCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccc
Q 037562           46 MNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEV  125 (670)
Q Consensus        46 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~  125 (670)
                      +++|++|+++++. +..++.....+++|++|+++++. ++.+.....+..+++|++|+++++. +..+.       ....
T Consensus        77 ~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~  146 (306)
T 2z66_A           77 TTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-------NGIF  146 (306)
T ss_dssp             CSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECS-------TTTT
T ss_pred             ccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccc-------hhhc
Confidence            4444444444442 33333334445566666665542 2222111234556666666666653 11111       1112


Q ss_pred             cccccccccccccccccc-ccccCCcccCCCCccEEeEecCCCcccc-ccCCcCCCCccceeeee
Q 037562          126 ITFRELKELNLLQMQNLI-SFCSGNCAFTFPSLEILVVNYCPNMKIF-SGGELSTPNLHKVQLSR  188 (670)
Q Consensus       126 ~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~i~~C~~l~~~-p~~~~~~~~L~~l~i~~  188 (670)
                      ..+++|++|.+.++.--. .++.  ....+++|+.|++++|. +..+ |..+..+++|+.|++++
T Consensus       147 ~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          147 NGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCEEECCCCccccccchh--HHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCC
Confidence            235556666665543221 1111  23345566666666553 3333 33344455566655543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.52  E-value=4.3e-07  Score=95.77  Aligned_cols=59  Identities=19%  Similarity=0.145  Sum_probs=33.3

Q ss_pred             cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCC-cCCCCccceeeee
Q 037562          127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE-LSTPNLHKVQLSR  188 (670)
Q Consensus       127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~i~~  188 (670)
                      .+++|+.|.+.++ +++.+... ....+++|+.|+++++ +++.+|... ..+++|+.|++++
T Consensus       270 ~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          270 ELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             TCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred             ccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence            3455555555554 23333221 2345677777777776 456666543 4567777777754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.52  E-value=2.6e-07  Score=97.26  Aligned_cols=127  Identities=12%  Similarity=0.075  Sum_probs=59.9

Q ss_pred             CCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562           46 MNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE  124 (670)
Q Consensus        46 ~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  124 (670)
                      +++|+.|++++|. +..+ +..+..+++|+.|+++++ .+....+......+++|++|+++++. +..++         .
T Consensus       119 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~---------~  186 (487)
T 3oja_A          119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVK---------G  186 (487)
T ss_dssp             CSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE---------C
T ss_pred             cCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-ccccc---------c
Confidence            3444444444443 2222 223334455555555544 22222211122245555555555543 22221         1


Q ss_pred             cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562          125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      ...+|+|+.|.++++ +++.++..  ...+++|+.|+++++ ++..+|.....+++|+.|++++
T Consensus       187 ~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          187 QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG  246 (487)
T ss_dssp             CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred             cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCC
Confidence            113566666666654 24444332  344566677776665 3555666655566666666654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.51  E-value=4.1e-07  Score=85.91  Aligned_cols=190  Identities=11%  Similarity=0.180  Sum_probs=138.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHH-HcCCChhhHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--chhH-
Q 037562          286 FVEFLMRQDYPQLQFKAAWALTN-IASGTSENTKVVID-HGAVPIFVKLL-ASPSVDVRKQTVWALGNVAGDS--PRCR-  359 (670)
Q Consensus       286 L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~i~~-~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~--~~~~-  359 (670)
                      +.+.+.+.+ ..-|..|+..|.. +..+.++....-.+ ..++..+...+ ++.+..++..|+.+++.++.+-  +.+. 
T Consensus        21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            456778888 6999999999999 87543332100000 12466777788 7899999999999999998422  1222 


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh-hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN-QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG  438 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~  438 (670)
                      .....  .++.++..+ .+....++..+..++..++...+..... ....+++.+...+++.++.++..++.+|..++..
T Consensus       100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            22222  578888888 6667889999999998888754221111 1467889999999999999999999999998855


Q ss_pred             Ch---HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562          439 TN---DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK  479 (670)
Q Consensus       439 ~~---~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  479 (670)
                      ..   ......+...+++.+..++.+.+..+|..|..+++.++.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            44   333334424899999999999999999999999998875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.51  E-value=3.7e-08  Score=85.50  Aligned_cols=80  Identities=14%  Similarity=0.100  Sum_probs=39.4

Q ss_pred             cccEEEeccCcCcc--cccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562           23 EVKISEAYNCYRLE--NILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        23 ~L~~L~i~~c~~l~--~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      +|+.|.+.+|. ++  .++.. ...+++|+.|++++| .+..+ .....+++|+.|++++|. ++.. .+.....+++|+
T Consensus        18 ~l~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~   91 (149)
T 2je0_A           18 DVKELVLDNSR-SNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLT   91 (149)
T ss_dssp             GCSEEECTTCB-CBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCC
T ss_pred             cCeEEEccCCc-CChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCC
Confidence            56666666653 33  33321 244566666666655 34444 334455566666666553 2221 112333455666


Q ss_pred             eecccccc
Q 037562          101 YMEIESCD  108 (670)
Q Consensus       101 ~L~i~~c~  108 (670)
                      +|+++++.
T Consensus        92 ~L~ls~N~   99 (149)
T 2je0_A           92 HLNLSGNK   99 (149)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCc
Confidence            66655553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.51  E-value=9.5e-07  Score=88.08  Aligned_cols=78  Identities=15%  Similarity=0.165  Sum_probs=56.0

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .|+.|+++++ +++.++......+++|++|+++++. +..+ +..+..+++|++|+++++. ++.+.  .  ...++|++
T Consensus        53 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~--~--~~~~~L~~  125 (330)
T 1xku_A           53 DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELP--E--KMPKTLQE  125 (330)
T ss_dssp             TCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCC--S--SCCTTCCE
T ss_pred             CCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCc-CCccC--h--hhcccccE
Confidence            8999999988 5777776555789999999999885 5555 5567788999999999884 44431  1  11245666


Q ss_pred             eccccc
Q 037562          102 MEIESC  107 (670)
Q Consensus       102 L~i~~c  107 (670)
                      |+++++
T Consensus       126 L~l~~n  131 (330)
T 1xku_A          126 LRVHEN  131 (330)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            655544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.50  E-value=6.8e-07  Score=86.28  Aligned_cols=145  Identities=19%  Similarity=0.173  Sum_probs=104.8

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhccccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      ..+|++|.+++| +++.++......+++|++|++++|. +..+++. +..+++|+.|++++| +++.+ ++..+..+++|
T Consensus        84 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L  159 (272)
T 3rfs_A           84 LTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNL  159 (272)
T ss_dssp             CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTC
T ss_pred             CCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCcc-CHHHhccCccC
Confidence            348999999988 5777765545678999999999985 6666654 467899999999999 56654 22345789999


Q ss_pred             ceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCC
Q 037562          100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTP  179 (670)
Q Consensus       100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~  179 (670)
                      ++|++++|. +..++.       .....+++|+.|.+.++. ++.+... ....+++|+.|++.+++-.       ..+|
T Consensus       160 ~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~~~-------~~~~  222 (272)
T 3rfs_A          160 TELDLSYNQ-LQSLPE-------GVFDKLTQLKDLRLYQNQ-LKSVPDG-VFDRLTSLQYIWLHDNPWD-------CTCP  222 (272)
T ss_dssp             CEEECCSSC-CCCCCT-------TTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCBC-------CCTT
T ss_pred             CEEECCCCC-cCccCH-------HHhcCCccCCEEECCCCc-CCccCHH-HHhCCcCCCEEEccCCCcc-------ccCc
Confidence            999999984 444321       123458899999999874 5555442 2456899999999988532       2245


Q ss_pred             Cccceee
Q 037562          180 NLHKVQL  186 (670)
Q Consensus       180 ~L~~l~i  186 (670)
                      +|+.|.+
T Consensus       223 ~l~~l~~  229 (272)
T 3rfs_A          223 GIRYLSE  229 (272)
T ss_dssp             TTHHHHH
T ss_pred             HHHHHHH
Confidence            6666644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.49  E-value=5.2e-07  Score=86.44  Aligned_cols=142  Identities=18%  Similarity=0.210  Sum_probs=95.7

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|.+.+| +++.++.  ...+++|+.|+++++. +..+++ ...+++|+.|+++++ +++.+   +.... ++|++|
T Consensus        42 ~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l---~~~~~-~~L~~L  111 (263)
T 1xeu_A           42 GVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNL---NGIPS-ACLSRL  111 (263)
T ss_dssp             TCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCC---TTCCC-SSCCEE
T ss_pred             cCcEEECcCC-CcccchH--HhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCc---Ccccc-CcccEE
Confidence            7888888887 5666652  4678889999988874 666665 667888888888887 44444   22223 788888


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH  182 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~  182 (670)
                      ++++|. ++.+.         ....+++|+.|.++++. ++.++   ....+++|+.|++++|. +..+ .....+++|+
T Consensus       112 ~L~~N~-l~~~~---------~l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~  175 (263)
T 1xeu_A          112 FLDNNE-LRDTD---------SLIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVN  175 (263)
T ss_dssp             ECCSSC-CSBSG---------GGTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCC
T ss_pred             EccCCc-cCCCh---------hhcCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCCCc-Ccch-HHhccCCCCC
Confidence            888873 43331         23457788888887753 55543   24457888888888774 4444 3445577888


Q ss_pred             ceeeeecc
Q 037562          183 KVQLSRWD  190 (670)
Q Consensus       183 ~l~i~~~~  190 (670)
                      .|++++..
T Consensus       176 ~L~l~~N~  183 (263)
T 1xeu_A          176 WIDLTGQK  183 (263)
T ss_dssp             EEEEEEEE
T ss_pred             EEeCCCCc
Confidence            88886644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.49  E-value=3.3e-07  Score=90.55  Aligned_cols=162  Identities=14%  Similarity=-0.002  Sum_probs=94.0

Q ss_pred             CccccEEEeccCcCcc-cccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccc-c
Q 037562           21 GMEVKISEAYNCYRLE-NILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLV-R   98 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~-~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~-~   98 (670)
                      ..+|++|+++++. ++ .++. ....+++|++|+++++.--..+|..+..+++|++|+++++. ++... +..+..++ +
T Consensus       100 l~~L~~L~Ls~n~-l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~~  175 (313)
T 1ogq_A          100 LTQLHYLYITHTN-VSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAI-PDSYGSFSKL  175 (313)
T ss_dssp             CTTCSEEEEEEEC-CEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEEC-CGGGGCCCTT
T ss_pred             CCCCCEEECcCCe-eCCcCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcC-CHHHhhhhhc
Confidence            3488999988874 44 3343 24678888888888875322455556678888888888874 33211 23445666 7


Q ss_pred             cceeccccccccceecccc---------------ccccccccccccccccccccccccccccccCCcccCCCCccEEeEe
Q 037562           99 LRYMEIESCDKITEIVLVD---------------DVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVN  163 (670)
Q Consensus        99 L~~L~i~~c~~l~~~~~~~---------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~  163 (670)
                      |++|+++++.--..++..-               ....+.....+++|+.|.+.++.--..++.   ...+++|+.|++.
T Consensus       176 L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls  252 (313)
T 1ogq_A          176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLR  252 (313)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECC
T ss_pred             CcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECc
Confidence            8888887764221211100               000111223456666666665532211111   3346778888887


Q ss_pred             cCCCccccccCCcCCCCccceeeeec
Q 037562          164 YCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       164 ~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      ++.--..+|..+..+++|+.|++++.
T Consensus       253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          253 NNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             CCcccCcCChHHhcCcCCCEEECcCC
Confidence            77543366766666777777777543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=3.7e-07  Score=101.90  Aligned_cols=157  Identities=11%  Similarity=0.064  Sum_probs=101.3

Q ss_pred             ccCCccccEEEeccCcCccc------------------ccccccc--cCCCCcEEEEecCCCCccccCCCccccccceee
Q 037562           18 VENGMEVKISEAYNCYRLEN------------------ILIEESS--VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLV   77 (670)
Q Consensus        18 ~~~~~~L~~L~i~~c~~l~~------------------~~~~~~~--~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~   77 (670)
                      +....+|+.|.++++. ++.                  +|.. ..  .+++|+.|++++|.-...+|..+..+++|+.|+
T Consensus       444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            3334489999998875 555                  5543 24  788999999999887777777778889999999


Q ss_pred             ecccccccc-cccchhhhc-------ccccceeccccccccceeccccccccccccccccccccccccccccccccccCC
Q 037562           78 VSHCKRLKI-VLTSSIAKT-------LVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGN  149 (670)
Q Consensus        78 i~~c~~l~~-l~~~~~~~~-------l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  149 (670)
                      ++++..++. .. +..+..       +|+|++|+++++. +..++..      .....+++|+.|.++++. ++.++   
T Consensus       522 Ls~N~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~------~~l~~L~~L~~L~Ls~N~-l~~lp---  589 (876)
T 4ecn_A          522 IACNRGISAAQL-KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPAS------ASLQKMVKLGLLDCVHNK-VRHLE---  589 (876)
T ss_dssp             CTTCTTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCH------HHHTTCTTCCEEECTTSC-CCBCC---
T ss_pred             CcCCCCcccccc-hHHHHhhhhcccccCCccEEEeeCCc-CCccCCh------hhhhcCCCCCEEECCCCC-cccch---
Confidence            998875554 22 122333       4588888888775 3343310      022346777777777654 33444   


Q ss_pred             cccCCCCccEEeEecCCCccccccCCcCCCC-ccceeeeec
Q 037562          150 CAFTFPSLEILVVNYCPNMKIFSGGELSTPN-LHKVQLSRW  189 (670)
Q Consensus       150 ~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~-L~~l~i~~~  189 (670)
                      ....+++|+.|++++|. +..+|..+..+++ |+.|++++.
T Consensus       590 ~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS
T ss_pred             hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC
Confidence            24456677777777664 4466666666666 777766543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.49  E-value=9e-07  Score=88.31  Aligned_cols=160  Identities=16%  Similarity=0.171  Sum_probs=88.9

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      ..+|++|.+.++ +++.+.......+++|++|+++++. +..++...  +++|++|+++++. ++.+ ++..+..+++|+
T Consensus        77 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~--~~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~  150 (332)
T 2ft3_A           77 LQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL--PSSLVELRIHDNR-IRKV-PKGVFSGLRNMN  150 (332)
T ss_dssp             CTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSC--CTTCCEEECCSSC-CCCC-CSGGGSSCSSCC
T ss_pred             CCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCccc--cccCCEEECCCCc-cCcc-CHhHhCCCccCC
Confidence            348899998887 4666644445678888888888774 55665543  2677777777663 3333 122345666777


Q ss_pred             eecccccccc------------------------ceecc-----------ccc---cccccccccccccccccccccccc
Q 037562          101 YMEIESCDKI------------------------TEIVL-----------VDD---VVAQDEVITFRELKELNLLQMQNL  142 (670)
Q Consensus       101 ~L~i~~c~~l------------------------~~~~~-----------~~~---~~~~~~~~~~~~L~~L~l~~~~~l  142 (670)
                      +|++.++.--                        ..++.           ...   .........+++|+.|.+.++ .+
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l  229 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QI  229 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CC
T ss_pred             EEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cC
Confidence            7766655321                        00000           000   000011122344444444443 22


Q ss_pred             cccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562          143 ISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       143 ~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      +.+... ....+++|+.|++.+| ++..+|.+...+++|+.|++++.
T Consensus       230 ~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          230 RMIENG-SLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CCCCTT-GGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred             CcCChh-HhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence            222221 2345677888888877 46677777777778888877643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.46  E-value=5.2e-07  Score=97.07  Aligned_cols=59  Identities=22%  Similarity=0.251  Sum_probs=42.8

Q ss_pred             cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeeecc
Q 037562          127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSRWD  190 (670)
Q Consensus       127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~~~  190 (670)
                      .+|+|++|+++++ +++.++.   ...+++|+.|+++++ +++.+|.. ...+++|+.|++++.+
T Consensus       449 ~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          449 FLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             CCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             cCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence            5778888888877 5666654   245788999999987 56666554 5568889999886544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.46  E-value=7.5e-07  Score=93.33  Aligned_cols=58  Identities=16%  Similarity=0.204  Sum_probs=27.0

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeeccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHC   81 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c   81 (670)
                      +|++|+++++.-...++......+++|++|+++++. +..+ +..+..+++|++|++++|
T Consensus        55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n  113 (455)
T 3v47_A           55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQC  113 (455)
T ss_dssp             TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTS
T ss_pred             cccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCC
Confidence            555665555543223332223445555555555553 2222 333344555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.46  E-value=7.4e-07  Score=99.75  Aligned_cols=63  Identities=13%  Similarity=0.021  Sum_probs=35.1

Q ss_pred             ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceecccccc
Q 037562           44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCD  108 (670)
Q Consensus        44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  108 (670)
                      ..+++|+.|++++|.-...+|..++.+++|+.|++++|.-...+  +..+..+++|+.|++++|+
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSE
T ss_pred             hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCc
Confidence            44556666666655533344444555666666666666432222  2345566777777776664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.44  E-value=3.1e-07  Score=99.34  Aligned_cols=61  Identities=25%  Similarity=0.245  Sum_probs=34.8

Q ss_pred             ccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeeec
Q 037562          126 ITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSRW  189 (670)
Q Consensus       126 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~~  189 (670)
                      ..+++|+.|++.++. ++.+... ....+|+|+.|++++| ++..+|.. ...+++|+.|++++.
T Consensus       467 ~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          467 TELRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             TTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             hcccCCCEEECCCCc-cccCChh-hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence            345666666666653 3333221 2345677777777776 45555433 445677777777543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.43  E-value=7.4e-07  Score=97.15  Aligned_cols=154  Identities=19%  Similarity=0.184  Sum_probs=95.4

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      .|+.|++.++ +++.++......+++|+.|+++++ .+..+|.....+++|++|++++|. ++.+. +..+..+++|++|
T Consensus       255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L  330 (606)
T 3t6q_A          255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK-FENLC-QISASNFPSLTHL  330 (606)
T ss_dssp             EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCC-CSBGG-GGCGGGCTTCSEE
T ss_pred             ceeEEEeecC-ccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCC-cCcCc-hhhhhccCcCCEE
Confidence            6888888877 466666554577899999999998 477888888889999999999984 44432 2456789999999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH  182 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~  182 (670)
                      ++.+|.....++.       .....+++|+.|.+.++.--...+.......+++|+.|++.+|.--...|.....+++|+
T Consensus       331 ~l~~n~~~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (606)
T 3t6q_A          331 SIKGNTKRLELGT-------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE  403 (606)
T ss_dssp             ECCSCSSCCBCCS-------STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred             ECCCCCcccccch-------hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence            9998864323221       112345666666666543211110011233455566666655543222333344455555


Q ss_pred             ceeee
Q 037562          183 KVQLS  187 (670)
Q Consensus       183 ~l~i~  187 (670)
                      +|+++
T Consensus       404 ~L~l~  408 (606)
T 3t6q_A          404 LLDLA  408 (606)
T ss_dssp             EEECT
T ss_pred             eEECC
Confidence            55554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.43  E-value=6.1e-08  Score=81.84  Aligned_cols=121  Identities=16%  Similarity=0.145  Sum_probs=94.1

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562          280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      ...++.++.+|++++ +.+|..|+++|+.+..            ..++.|+.++.++++.+|..|+++|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            346788899999988 7999999999987753            136899999999999999999999999852  1   


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYL  435 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l  435 (670)
                            ..++.|+..+ ++.++.++..|+++|.++..          ...++.|..+++++++.++..++.+|..+
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  1478888888 77889999999999999863          45789999999999999999999988753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.43  E-value=2e-06  Score=81.12  Aligned_cols=191  Identities=11%  Similarity=0.131  Sum_probs=138.7

Q ss_pred             HHHHhcccCChhHHHHHHHHHHh-hhcCCCCCC--hhhhhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCh-HHHH-
Q 037562          371 LLAELNENANLSMLRTATWTLFN-FCRGKPQPP--FNQVRPALPVLAQLI-RSNDEEVLTDACWALSYLSDGTN-DKVQ-  444 (670)
Q Consensus       371 Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~i~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~-~~~~-  444 (670)
                      +...+ .+.+..-|..|+..|.. ++.+.+...  ......++..+.+.+ ++.+..++..|+.+++.++..-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34445 67788889999999999 875533222  222356788888999 68899999999999999984322 1111 


Q ss_pred             HHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCC
Q 037562          445 AVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGN  524 (670)
Q Consensus       445 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  524 (670)
                      .... .+++.++..+.+....|+..+..++-.++...+.....-.-..+++.|...+++. ++.+|..++.++..++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            1222 4778999999998889999999998888864321111000013677888999998 9999999999999998643


Q ss_pred             H---HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          525 R---EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       525 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                      +   ......+...++|.+..++.+.+.+||..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3   333333424689999999999999999999999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.43  E-value=9.9e-07  Score=91.90  Aligned_cols=54  Identities=11%  Similarity=0.114  Sum_probs=27.4

Q ss_pred             cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeee
Q 037562          127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLS  187 (670)
Q Consensus       127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~  187 (670)
                      .+++|+.|.+.++..+..+.    ...+++|+.|++.+| +++.+|  ...+++|+.|+++
T Consensus       146 ~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~  199 (457)
T 3bz5_A          146 HNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCD  199 (457)
T ss_dssp             TCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECC
T ss_pred             cCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceec--cccCCCCCEEECc
Confidence            35556666666555444442    234556666666655 344444  2334555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.42  E-value=3.7e-07  Score=97.45  Aligned_cols=159  Identities=14%  Similarity=0.133  Sum_probs=94.9

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccccccccccc-chhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLT-SSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~  101 (670)
                      +|+.|.++++. +...+.  ...+++|++|++++|.--...+.....+++|+.|++++|. ++.+.. +..+..+++|++
T Consensus       303 ~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~  378 (520)
T 2z7x_B          303 NIKNFTVSGTR-MVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQ  378 (520)
T ss_dssp             CCSEEEEESSC-CCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCE
T ss_pred             ceeEEEcCCCc-cccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCE
Confidence            58888888775 333221  1467788888888875333355556677888888888774 332210 123567778888


Q ss_pred             eccccccccceecccc--------------ccccccccccc-cccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          102 MEIESCDKITEIVLVD--------------DVVAQDEVITF-RELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~--------------~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      |+++++.--..++...              ..........+ ++|+.|.++++ +++.++..  ...+++|+.|++++| 
T Consensus       379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-  454 (520)
T 2z7x_B          379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-  454 (520)
T ss_dssp             EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-
T ss_pred             EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-
Confidence            8777765222122100              00000001122 56777777766 45555543  347888999999887 


Q ss_pred             CccccccC-CcCCCCccceeeeec
Q 037562          167 NMKIFSGG-ELSTPNLHKVQLSRW  189 (670)
Q Consensus       167 ~l~~~p~~-~~~~~~L~~l~i~~~  189 (670)
                      +++.+|.. ...+++|+.|++++.
T Consensus       455 ~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          455 QLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCccCHHHhccCCcccEEECcCC
Confidence            57778876 556788888888653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.42  E-value=4.9e-07  Score=80.13  Aligned_cols=134  Identities=17%  Similarity=0.122  Sum_probs=101.6

Q ss_pred             ccCCCCcEEEEecCCCCc--cccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccc
Q 037562           44 SVMNNLVILCVHCCDHLI--NLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVA  121 (670)
Q Consensus        44 ~~~~~L~~L~i~~c~~l~--~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  121 (670)
                      ..+++|++|++++|. +.  .++.....+++|+.|++++|. ++.+   ..+..+++|++|++++|. +...+       
T Consensus        21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~-------   87 (168)
T 2ell_A           21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGGL-------   87 (168)
T ss_dssp             SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSCC-------
T ss_pred             CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchHH-------
Confidence            456899999999986 55  677767889999999999996 6665   566789999999999986 33211       


Q ss_pred             ccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc----CCcCCCCccceeeeeccCC
Q 037562          122 QDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG----GELSTPNLHKVQLSRWDGE  192 (670)
Q Consensus       122 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~----~~~~~~~L~~l~i~~~~~~  192 (670)
                      +.....+|+|+.|.+.++ +++.++.......+|+|+.|++.+|+ +..+|.    .+..+|+|+.|+++++...
T Consensus        88 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           88 DMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            112234899999999988 57776532245678999999999985 566665    4566899999999877654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.42  E-value=6e-07  Score=97.11  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=112.7

Q ss_pred             ccccEEEeccCcCccccc--ccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccc
Q 037562           22 MEVKISEAYNCYRLENIL--IEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~--~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      .+|+.|+++++. +....  ......+++|+.|++++|. +..+++....+++|++|++++|. +....+...+..+++|
T Consensus       347 ~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          347 PSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             TTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTC
T ss_pred             CCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc-cccccchhhhhcCCCC
Confidence            489999999884 44432  2224678999999999985 55666556788999999999985 3333322456789999


Q ss_pred             ceeccccccccceeccccccccccccccccccccccccccccc-cccccCCcccCCCCccEEeEecCCCccccccCCcCC
Q 037562          100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNL-ISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELST  178 (670)
Q Consensus       100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~  178 (670)
                      ++|++++|.-....        +.....+++|+.|.+.++.-. ..++.  ....+++|+.|++.+|.--...|..+..+
T Consensus       424 ~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  493 (570)
T 2z63_A          424 IYLDISHTHTRVAF--------NGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSL  493 (570)
T ss_dssp             CEEECTTSCCEECC--------TTTTTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CEEeCcCCcccccc--------hhhhhcCCcCcEEECcCCcCccccchh--hhhcccCCCEEECCCCccccCChhhhhcc
Confidence            99999999632221        123345899999999998744 23433  35678999999999996433347777788


Q ss_pred             CCccceeeeecc
Q 037562          179 PNLHKVQLSRWD  190 (670)
Q Consensus       179 ~~L~~l~i~~~~  190 (670)
                      ++|+.|++++..
T Consensus       494 ~~L~~L~l~~n~  505 (570)
T 2z63_A          494 SSLQVLNMASNQ  505 (570)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEeCCCCc
Confidence            999999997653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.41  E-value=3.9e-07  Score=102.03  Aligned_cols=133  Identities=14%  Similarity=-0.021  Sum_probs=70.8

Q ss_pred             cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562           45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE  124 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  124 (670)
                      .+++|+.|++++|.--..+|..+..+++|+.|++++|.--..+  +..+..+++|++|++++|.--..+        +..
T Consensus       416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~--------p~~  485 (768)
T 3rgz_A          416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEI--------PSG  485 (768)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCC--------CGG
T ss_pred             cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccCcC--------CHH
Confidence            3444444444444321122333334445555555544322111  123344555555555554321111        122


Q ss_pred             cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562          125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      ...+++|+.|.+.++.--..++.  ....+++|+.|++++|.-...+|..+..+++|+.|++++.
T Consensus       486 l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             HhcCCCCCEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            34567777777777764434433  2456788888888888665577777777888888888654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.41  E-value=1.9e-06  Score=85.93  Aligned_cols=79  Identities=11%  Similarity=0.126  Sum_probs=59.8

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|+.|+++++. ++.++......+++|++|++++|. +..+ +..+..+++|++|+++++ .++.+.  ..  ..++|++
T Consensus        55 ~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~--~~--~~~~L~~  127 (332)
T 2ft3_A           55 DTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIP--PN--LPSSLVE  127 (332)
T ss_dssp             TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCC--SS--CCTTCCE
T ss_pred             CCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccC--cc--ccccCCE
Confidence            89999999884 777765445789999999999985 6565 445677899999999988 455541  11  2279999


Q ss_pred             ecccccc
Q 037562          102 MEIESCD  108 (670)
Q Consensus       102 L~i~~c~  108 (670)
                      |+++++.
T Consensus       128 L~l~~n~  134 (332)
T 2ft3_A          128 LRIHDNR  134 (332)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            9987764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.41  E-value=1.4e-06  Score=93.90  Aligned_cols=31  Identities=16%  Similarity=0.124  Sum_probs=15.6

Q ss_pred             CCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562          154 FPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       154 ~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      +++|+.|+++++ +++.+|.   .+++|+.|++++
T Consensus       240 l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          240 PSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred             CCcCcEEECCCC-CCCcCCc---ccccCcEEeCCC
Confidence            355555555554 3444554   244555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.39  E-value=8.8e-07  Score=95.27  Aligned_cols=155  Identities=15%  Similarity=0.103  Sum_probs=109.3

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|++|+++++. ++.++......+++|++|+++++. +..++ ..+..+++|++|++++|. ++.+ ++..+..+++|++
T Consensus        27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~  102 (549)
T 2z81_A           27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSL-SSSWFGPLSSLKY  102 (549)
T ss_dssp             TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCSC-CHHHHTTCTTCCE
T ss_pred             CccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCc-cCcc-CHHHhccCCCCcE
Confidence            89999999885 777655445778999999999884 55655 346778999999999883 4444 2334678999999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCc
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNL  181 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L  181 (670)
                      |+++++. ++.+.      .+.....+++|++|.+.++..+..++.. ....+++|+.|++.+|.--...|.....+++|
T Consensus       103 L~Ls~n~-l~~~~------~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  174 (549)
T 2z81_A          103 LNLMGNP-YQTLG------VTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDI  174 (549)
T ss_dssp             EECTTCC-CSSSC------SSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             EECCCCc-ccccc------hhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhhhhccccC
Confidence            9999885 32221      0112345788999999888767666542 24567889999998886444466666667777


Q ss_pred             cceeeeec
Q 037562          182 HKVQLSRW  189 (670)
Q Consensus       182 ~~l~i~~~  189 (670)
                      ++|+++..
T Consensus       175 ~~L~l~~n  182 (549)
T 2z81_A          175 HHLTLHLS  182 (549)
T ss_dssp             EEEEEECS
T ss_pred             ceEecccC
Confidence            77776543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.37  E-value=5.3e-07  Score=89.03  Aligned_cols=133  Identities=17%  Similarity=0.116  Sum_probs=65.9

Q ss_pred             CCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhh--hcccccceeccccccccceecccccccccc
Q 037562           47 NNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIA--KTLVRLRYMEIESCDKITEIVLVDDVVAQD  123 (670)
Q Consensus        47 ~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~  123 (670)
                      ++|++|+++++. +..++ ..+..+++|++|+++++.-......++..  ..+++|++|+++++. ++.+...    ...
T Consensus       149 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~  222 (312)
T 1wwl_A          149 PGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGV----CSA  222 (312)
T ss_dssp             TTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHH----HHH
T ss_pred             CCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHH----HHH
Confidence            566666666554 33333 33455666666666666432221001111  456666666666653 2211100    000


Q ss_pred             ccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562          124 EVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       124 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      ....+++|+.|.++++. ++..........+++|+.|+++++. ++.+|....  ++|+.|++++.
T Consensus       223 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N  284 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN  284 (312)
T ss_dssp             HHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS
T ss_pred             HHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC
Confidence            01134667777776653 3332211112335677777777763 556666554  67777777543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.37  E-value=4.3e-07  Score=99.17  Aligned_cols=88  Identities=13%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             ccCCccccEEEeccCcCccc------------------ccccccc--cCCCCcEEEEecCCCCccccCCCccccccceee
Q 037562           18 VENGMEVKISEAYNCYRLEN------------------ILIEESS--VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLV   77 (670)
Q Consensus        18 ~~~~~~L~~L~i~~c~~l~~------------------~~~~~~~--~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~   77 (670)
                      +....+|++|+++++. ++.                  +|.. ..  .+++|++|++++|.-...+|..+..+++|+.|+
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            3334589999999886 666                  5544 35  789999999999987777888888899999999


Q ss_pred             ecccccccc-cccchhhhcc------cccceecccccc
Q 037562           78 VSHCKRLKI-VLTSSIAKTL------VRLRYMEIESCD  108 (670)
Q Consensus        78 i~~c~~l~~-l~~~~~~~~l------~~L~~L~i~~c~  108 (670)
                      +++|..++. .. +..+..+      ++|++|++.+|.
T Consensus       280 Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          280 VACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             CTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             CcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCc
Confidence            999975654 22 2334444      889999888774

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.37  E-value=5.7e-08  Score=105.81  Aligned_cols=164  Identities=16%  Similarity=0.159  Sum_probs=106.8

Q ss_pred             cccEEEeccCcCcccccc--------------cccccCCCCcEEEEecCCCCccc-cCCCc-cccccceeeecccccccc
Q 037562           23 EVKISEAYNCYRLENILI--------------EESSVMNNLVILCVHCCDHLINL-VPSST-SFQNLTNLVVSHCKRLKI   86 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~--------------~~~~~~~~L~~L~i~~c~~l~~~-~~~~~-~~~~L~~L~i~~c~~l~~   86 (670)
                      +|++|.+.+|+.+.+...              .....+++|++|++++|. +... +.... .+++|++|++.+|..+..
T Consensus        67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            789999999887654421              012357899999999885 4322 11222 578999999999987766


Q ss_pred             cccchhhhcccccceeccccccccceeccccccccccccccccccccccccccc-cccccccCCcccCCCCccEEeEecC
Q 037562           87 VLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQ-NLISFCSGNCAFTFPSLEILVVNYC  165 (670)
Q Consensus        87 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~L~~L~i~~C  165 (670)
                      ........++++|++|++.+|. +.....   .........+|+|++|.+.+|. .+..-........+|+|++|++.+|
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~-i~~~~~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESD-VDDVSG---HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCE-EECCCG---GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHHHHHHHhCCCCCEEeCcCCc-cCCcch---HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            3223445578999999999987 332110   0001112357799999998886 1211000001234799999999999


Q ss_pred             CCccccccCCcCCCCccceeeeeccC
Q 037562          166 PNMKIFSGGELSTPNLHKVQLSRWDG  191 (670)
Q Consensus       166 ~~l~~~p~~~~~~~~L~~l~i~~~~~  191 (670)
                      ..+..+|.....+++|++|.++.+..
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~~~  247 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGYTA  247 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred             CcHHHHHHHHhcCCcceEcccccccC
Confidence            88877777666788999998765543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=4.5e-07  Score=101.20  Aligned_cols=152  Identities=15%  Similarity=0.101  Sum_probs=103.4

Q ss_pred             CCccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcc--ccCCC-------ccccccceeeecccccccccccc
Q 037562           20 NGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLIN--LVPSS-------TSFQNLTNLVVSHCKRLKIVLTS   90 (670)
Q Consensus        20 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~   90 (670)
                      ...+|+.|.+++|.-...+|.. ...+++|+.|+++++..+..  +|..+       ..+++|+.|++++|. +..+  +
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~i--p  564 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEF--P  564 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBC--C
T ss_pred             cCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCcc--C
Confidence            3458999999999777777743 47899999999999875654  55433       345699999999884 4444  2


Q ss_pred             h--hhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCC-ccEEeEecCCC
Q 037562           91 S--IAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPS-LEILVVNYCPN  167 (670)
Q Consensus        91 ~--~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~i~~C~~  167 (670)
                      .  .+..+++|+.|+++++. +..++         ....+++|+.|.++++. ++.++..  ...+++ |+.|++.+|. 
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~-l~~lp---------~~~~L~~L~~L~Ls~N~-l~~lp~~--l~~l~~~L~~L~Ls~N~-  630 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNK-VRHLE---------AFGTNVKLTDLKLDYNQ-IEEIPED--FCAFTDQVEGLGFSHNK-  630 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSC-CCBCC---------CCCTTSEESEEECCSSC-CSCCCTT--SCEECTTCCEEECCSSC-
T ss_pred             ChhhhhcCCCCCEEECCCCC-cccch---------hhcCCCcceEEECcCCc-cccchHH--HhhccccCCEEECcCCC-
Confidence            3  57789999999998875 33432         22356778888777764 3344432  445677 8888887775 


Q ss_pred             ccccccCCcCC--CCccceeeeec
Q 037562          168 MKIFSGGELST--PNLHKVQLSRW  189 (670)
Q Consensus       168 l~~~p~~~~~~--~~L~~l~i~~~  189 (670)
                      +..+|......  ++|+.|++++.
T Consensus       631 L~~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          631 LKYIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred             CCcCchhhhccccCCCCEEECcCC
Confidence            55677654433  34777777554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.37  E-value=1.8e-06  Score=82.12  Aligned_cols=132  Identities=15%  Similarity=0.130  Sum_probs=97.2

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhccccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      ..+|++|.++++ +++.++......+++|+.|+++++. +..+++. +..+++|++|+++++ +++.+ ++..+..+++|
T Consensus        58 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L  133 (251)
T 3m19_A           58 LTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSL-PSGVFDRLTKL  133 (251)
T ss_dssp             CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTC
T ss_pred             cccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCc-ChhHhccCCcc
Confidence            348999999987 5776665545678999999999875 5566544 467899999999998 56655 22345789999


Q ss_pred             ceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      ++|+++++ .++.++.       .....+++|+.|.+.+. .++.++.. ....+++|+.|++.+++
T Consensus       134 ~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          134 KELRLNTN-QLQSIPA-------GAFDKLTNLQTLSLSTN-QLQSVPHG-AFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CEEECCSS-CCCCCCT-------TTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSCC
T ss_pred             cEEECcCC-cCCccCH-------HHcCcCcCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCc
Confidence            99999988 4554432       12345789999999886 45555542 24568999999998865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.36  E-value=5.1e-05  Score=84.20  Aligned_cols=307  Identities=11%  Similarity=0.129  Sum_probs=209.3

Q ss_pred             hhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-
Q 037562          236 KLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS-  314 (670)
Q Consensus       236 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-  314 (670)
                      .+..+..+++.+...+.+-...|+..+..+........   .+..+++..+.+.+.+.. ..  +.|+.++..++.... 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~   85 (986)
T 2iw3_A           12 SIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNL   85 (986)
T ss_dssp             HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTC
T ss_pred             hHHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCC
Confidence            44456667777765445566777778887765421111   111256777888877765 23  999999999995331 


Q ss_pred             -hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh
Q 037562          315 -ENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN  393 (670)
Q Consensus       315 -~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~  393 (670)
                       ...+.++ .+.++.++....+....|+..|..++..+...-+...-.    ..+|.++..+......+.+..|+.++..
T Consensus        86 ~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~  160 (986)
T 2iw3_A           86 SPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK----ALLPHLTNAIVETNKWQEKIAILAAFSA  160 (986)
T ss_dssp             CTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             CCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHHhccccchHHHHHHHHHHHH
Confidence             1222222 257899999999988999998888877776433322111    2589999999666677888899999999


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCCHHHHHHhcCCCCccchhHHHH
Q 037562          394 FCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN-DKVQAVIEAGVYPRLVELLGHSSSSVLTPALR  472 (670)
Q Consensus       394 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  472 (670)
                      ++...+.........++|.+...+.+..++|...+..++..++.--+ ....     .+++.|+..+.+++.  ...++.
T Consensus       161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~  233 (986)
T 2iw3_A          161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVH  233 (986)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHH
T ss_pred             HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHH
Confidence            99865433344447888999999989999999999988888773211 1111     578999999988753  444555


Q ss_pred             HHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc--CCHHHHHHHHhcCChHHHHHHhh-cCCh
Q 037562          473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC--GNREQIQAVIDSGLIGPIVNLLQ-NTEF  549 (670)
Q Consensus       473 ~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~-~~~~  549 (670)
                      .|+.-+.-.......+  +=.+|.|..-|... ...+++.++-++.|+|.  .+|.....++- ..+|.+....+ -.++
T Consensus       234 ~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~p  309 (986)
T 2iw3_A          234 LLGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADP  309 (986)
T ss_dssp             HHTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSH
T ss_pred             HhhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCH
Confidence            5544433222111111  12467777778877 88899999999999998  67776666664 57888887776 5689


Q ss_pred             hHHHHHHHHHHHhcC
Q 037562          550 DTKKEAAWAISNATK  564 (670)
Q Consensus       550 ~v~~~a~~aL~~l~~  564 (670)
                      ++|..|..|+..+..
T Consensus       310 e~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          310 EAREVTLRALKTLRR  324 (986)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998888888743

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.36  E-value=1.2e-06  Score=91.61  Aligned_cols=85  Identities=13%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC--Cccccccceeeecccccccccccchhhhccccc
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      .+|++|+++++. ++.+.......+++|++|++++|.--...+..  +..+++|++|+++++. ++.+.+...+..+++|
T Consensus        79 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           79 SSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRF  156 (455)
T ss_dssp             TTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTC
T ss_pred             ccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcc
Confidence            488899988875 55554333467888888888888532223332  5567788888888774 3443332335677788


Q ss_pred             ceecccccc
Q 037562          100 RYMEIESCD  108 (670)
Q Consensus       100 ~~L~i~~c~  108 (670)
                      ++|+++++.
T Consensus       157 ~~L~L~~n~  165 (455)
T 3v47_A          157 HVLDLTFNK  165 (455)
T ss_dssp             CEEECTTCC
T ss_pred             cEEeCCCCc
Confidence            888777664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.35  E-value=4.2e-07  Score=99.30  Aligned_cols=152  Identities=15%  Similarity=0.150  Sum_probs=92.8

Q ss_pred             CCccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcc--ccCCCccc------cccceeeecccccccccccch
Q 037562           20 NGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLIN--LVPSSTSF------QNLTNLVVSHCKRLKIVLTSS   91 (670)
Q Consensus        20 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~~~~------~~L~~L~i~~c~~l~~l~~~~   91 (670)
                      ...+|++|.+++|.-...+|.. ...+++|+.|++++|..+..  +|...+.+      ++|++|++++|. ++.+  +.
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~i--p~  322 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTF--PV  322 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSC--CC
T ss_pred             ccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCcc--Cc
Confidence            3458999999999766666643 46789999999999875654  66555444      899999999884 4444  23


Q ss_pred             --hhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCC-ccEEeEecCCCc
Q 037562           92 --IAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPS-LEILVVNYCPNM  168 (670)
Q Consensus        92 --~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~i~~C~~l  168 (670)
                        .+..+++|++|+++++.--..++         ....+++|+.|.+.++. ++.++..  ...+++ |+.|++.++. +
T Consensus       323 ~~~l~~l~~L~~L~L~~N~l~g~ip---------~~~~l~~L~~L~L~~N~-l~~lp~~--l~~l~~~L~~L~Ls~N~-l  389 (636)
T 4eco_A          323 ETSLQKMKKLGMLECLYNQLEGKLP---------AFGSEIKLASLNLAYNQ-ITEIPAN--FCGFTEQVENLSFAHNK-L  389 (636)
T ss_dssp             HHHHTTCTTCCEEECCSCCCEEECC---------CCEEEEEESEEECCSSE-EEECCTT--SEEECTTCCEEECCSSC-C
T ss_pred             hhhhccCCCCCEEeCcCCcCccchh---------hhCCCCCCCEEECCCCc-cccccHh--hhhhcccCcEEEccCCc-C
Confidence              57788899999988775221332         12335566666665542 3333332  334455 6666665554 3


Q ss_pred             cccccCCcC--CCCccceeeee
Q 037562          169 KIFSGGELS--TPNLHKVQLSR  188 (670)
Q Consensus       169 ~~~p~~~~~--~~~L~~l~i~~  188 (670)
                      ..+|.....  +++|+.|++++
T Consensus       390 ~~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          390 KYIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             SSCCSCCCTTCSSCEEEEECCS
T ss_pred             cccchhhhhcccCccCEEECcC
Confidence            455543332  22555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.35  E-value=2.9e-07  Score=80.31  Aligned_cols=17  Identities=35%  Similarity=0.466  Sum_probs=9.3

Q ss_pred             ccccccccccccccccc
Q 037562          128 FRELKELNLLQMQNLIS  144 (670)
Q Consensus       128 ~~~L~~L~l~~~~~l~~  144 (670)
                      +|+|+.|.+++|++++.
T Consensus       138 ~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CTTCCEEEEESCTTCCC
T ss_pred             CCCCCEEECCCCCCCCc
Confidence            45555555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.35  E-value=2.4e-06  Score=88.96  Aligned_cols=52  Identities=21%  Similarity=0.121  Sum_probs=26.8

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHC   81 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c   81 (670)
                      +|++|+++++. ++.++   ...+++|++|++++|. +..++  ...+++|++|+++++
T Consensus        65 ~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           65 GLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSS
T ss_pred             CCCEEEccCCc-CCeEc---cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCC
Confidence            66666666653 44443   2445566666665553 33332  334455555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.35  E-value=1.9e-06  Score=84.94  Aligned_cols=159  Identities=13%  Similarity=0.085  Sum_probs=80.9

Q ss_pred             CccccEEEeccCcCccccc---ccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccc--cccchhhh
Q 037562           21 GMEVKISEAYNCYRLENIL---IEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKI--VLTSSIAK   94 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~---~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~--l~~~~~~~   94 (670)
                      ..+|++|+++++.--...+   ......+++|++|++++|. +..++ ..+..+++|++|+++++.-...  +.......
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            3477888887764221111   1112357788888887775 33443 3445677788888877753221  11112234


Q ss_pred             cccccceeccccccccceecccccccccccccccccccccccccccccccc-ccCCc-ccCCCCccEEeEecCCCccccc
Q 037562           95 TLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISF-CSGNC-AFTFPSLEILVVNYCPNMKIFS  172 (670)
Q Consensus        95 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~-~~~~~~L~~L~i~~C~~l~~~p  172 (670)
                      .+++|++|++++|. ++.+....    ......+++|++|.++++. ++.. +.... ...+++|++|+++++ +++.+|
T Consensus       195 ~l~~L~~L~Ls~N~-l~~l~~~~----~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp  267 (310)
T 4glp_A          195 KFPAIQNLALRNTG-METPTGVC----AALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVP  267 (310)
T ss_dssp             SSCCCCSCBCCSSC-CCCHHHHH----HHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCC
T ss_pred             cCCCCCEEECCCCC-CCchHHHH----HHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchh
Confidence            67777777777763 33221100    0001234666666666543 3332 21100 111256666666655 345566


Q ss_pred             cCCcCCCCccceeeeec
Q 037562          173 GGELSTPNLHKVQLSRW  189 (670)
Q Consensus       173 ~~~~~~~~L~~l~i~~~  189 (670)
                      ....  ++|+.|++++.
T Consensus       268 ~~~~--~~L~~L~Ls~N  282 (310)
T 4glp_A          268 KGLP--AKLRVLDLSSN  282 (310)
T ss_dssp             SCCC--SCCSCEECCSC
T ss_pred             hhhc--CCCCEEECCCC
Confidence            5442  56666666543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.32  E-value=1.9e-06  Score=79.34  Aligned_cols=129  Identities=19%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             CCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562           46 MNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE  124 (670)
Q Consensus        46 ~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  124 (670)
                      .++|++|+++++. +..+++. +..+++|++|+++++ +++.+ +...+..+++|++|+++++. ++.++.       ..
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~   95 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPN-------GV   95 (208)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-------TT
T ss_pred             CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCc-CCccCH-------hH
Confidence            3455555555542 3333332 234555555555554 33332 11223445555555555542 222210       11


Q ss_pred             cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeee
Q 037562          125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSR  188 (670)
Q Consensus       125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~  188 (670)
                      ...+++|+.|.+.+. +++.++.. ....+++|+.|++.++ ++..+|.. ...+++|+.|++++
T Consensus        96 ~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A           96 FDKLTQLKELALNTN-QLQSLPDG-VFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             hcCccCCCEEEcCCC-cCcccCHh-HhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecC
Confidence            123455555555543 23333321 1233555666666554 34444443 23355555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.32  E-value=9.9e-07  Score=87.01  Aligned_cols=158  Identities=9%  Similarity=-0.014  Sum_probs=94.4

Q ss_pred             cccEEEeccCcCccccccccc--ccCCCCcEEEEecCCCCcccc----CCCccccccceeeecccccccccccchhhhcc
Q 037562           23 EVKISEAYNCYRLENILIEES--SVMNNLVILCVHCCDHLINLV----PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTL   96 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~--~~~~~L~~L~i~~c~~l~~~~----~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l   96 (670)
                      +|++|.+++|. +........  ..+++|++|+++++.--...+    .....+++|++|++++|.- ..+ ++..+..+
T Consensus        92 ~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~-~~~~~~~l  168 (310)
T 4glp_A           92 RLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAF-SCEQVRAF  168 (310)
T ss_dssp             CCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCC-CTTSCCCC
T ss_pred             ceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chh-hHHHhccC
Confidence            58888888885 333322222  567888888888875322111    1123578888898888743 333 22345678


Q ss_pred             cccceeccccccccce--eccccccccccccccccccccccccccccccccccCC--cccCCCCccEEeEecCCCccccc
Q 037562           97 VRLRYMEIESCDKITE--IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGN--CAFTFPSLEILVVNYCPNMKIFS  172 (670)
Q Consensus        97 ~~L~~L~i~~c~~l~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~L~~L~i~~C~~l~~~p  172 (670)
                      ++|++|+++++.-...  +..      ......+|+|++|.++++ +++.++...  ....+++|++|+++++.--...|
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMA------ALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHT------TSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred             CCCCEEECCCCCCccchhhhH------HHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence            8889998888863211  110      011235788888888876 344332210  02356888889888875333336


Q ss_pred             cCCcCC---CCccceeeeecc
Q 037562          173 GGELST---PNLHKVQLSRWD  190 (670)
Q Consensus       173 ~~~~~~---~~L~~l~i~~~~  190 (670)
                      .....+   ++|++|++++..
T Consensus       242 ~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          242 PSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             SCCSSCCCCTTCCCEECCSSC
T ss_pred             hhHHhccCcCcCCEEECCCCC
Confidence            555443   688888886543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.32  E-value=1.1e-07  Score=103.52  Aligned_cols=13  Identities=23%  Similarity=0.401  Sum_probs=6.9

Q ss_pred             CCCccEEeEecCC
Q 037562          154 FPSLEILVVNYCP  166 (670)
Q Consensus       154 ~~~L~~L~i~~C~  166 (670)
                      +++|++|++.+|+
T Consensus       288 ~~~L~~L~L~~~~  300 (594)
T 2p1m_B          288 CSRLTTLNLSYAT  300 (594)
T ss_dssp             HTTCCEEECTTCC
T ss_pred             hCCCCEEEccCCC
Confidence            3455555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.32  E-value=1.4e-06  Score=93.81  Aligned_cols=159  Identities=12%  Similarity=0.134  Sum_probs=88.0

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccccccccccc-chhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLT-SSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~  101 (670)
                      +|+.|.+.++. +.....  ...+++|++|+++++.--...+.....+++|+.|+++++ +++.+.. +..+..+++|++
T Consensus       332 ~L~~L~l~~n~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          332 NIKMLSISDTP-FIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             CCSEEEEESSC-CCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCE
T ss_pred             cceEEEccCCC-cccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCE
Confidence            47777776664 222211  134566666666666432223444455666666666665 3333211 112345666666


Q ss_pred             eccccccccceeccc--------------cccccccccccc-cccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          102 MEIESCDKITEIVLV--------------DDVVAQDEVITF-RELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       102 L~i~~c~~l~~~~~~--------------~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      |+++++.--..++..              ...........+ ++|+.|+++++ +++.++.+  ...+++|+.|++.++ 
T Consensus       408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N-  483 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASN-  483 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSS-
T ss_pred             EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCC-
Confidence            666655421112110              000000111123 57888888877 67776654  347889999999887 


Q ss_pred             CccccccC-CcCCCCccceeeeec
Q 037562          167 NMKIFSGG-ELSTPNLHKVQLSRW  189 (670)
Q Consensus       167 ~l~~~p~~-~~~~~~L~~l~i~~~  189 (670)
                      +++.+|.. ...+++|+.|++++.
T Consensus       484 ~l~~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          484 QLKSVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred             CCCCCCHHHHhcCCCCCEEEecCC
Confidence            47788877 566888888888654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.30  E-value=7.4e-07  Score=88.00  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=101.8

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcc--ccCCC--ccccccceeeecccccccccc--cchhhhcc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLIN--LVPSS--TSFQNLTNLVVSHCKRLKIVL--TSSIAKTL   96 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~--~~~~~L~~L~i~~c~~l~~l~--~~~~~~~l   96 (670)
                      +|++|+++++. +..++......+++|++|+++++.-...  ++...  ..+++|++|++++| +++.+.  +......+
T Consensus       150 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          150 GLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAAR  227 (312)
T ss_dssp             TCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTT
T ss_pred             CCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcC
Confidence            56666666553 4444433446789999999999874332  22222  67899999999998 344321  11223577


Q ss_pred             cccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCc
Q 037562           97 VRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGEL  176 (670)
Q Consensus        97 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~  176 (670)
                      ++|++|+++++. +...+.      ......+++|+.|.++++. ++.++..  .  +++|+.|+++++ +++.+|. ..
T Consensus       228 ~~L~~L~Ls~N~-l~~~~~------~~~~~~l~~L~~L~Ls~N~-l~~ip~~--~--~~~L~~L~Ls~N-~l~~~p~-~~  293 (312)
T 1wwl_A          228 VQLQGLDLSHNS-LRDAAG------APSCDWPSQLNSLNLSFTG-LKQVPKG--L--PAKLSVLDLSYN-RLDRNPS-PD  293 (312)
T ss_dssp             CCCSEEECTTSC-CCSSCC------CSCCCCCTTCCEEECTTSC-CSSCCSS--C--CSEEEEEECCSS-CCCSCCC-TT
T ss_pred             CCCCEEECCCCc-CCcccc------hhhhhhcCCCCEEECCCCc-cChhhhh--c--cCCceEEECCCC-CCCCChh-Hh
Confidence            999999999885 333210      0112346899999999874 5566542  1  289999999987 5777887 66


Q ss_pred             CCCCccceeeeec
Q 037562          177 STPNLHKVQLSRW  189 (670)
Q Consensus       177 ~~~~L~~l~i~~~  189 (670)
                      .+++|+.|++++.
T Consensus       294 ~l~~L~~L~L~~N  306 (312)
T 1wwl_A          294 ELPQVGNLSLKGN  306 (312)
T ss_dssp             TSCEEEEEECTTC
T ss_pred             hCCCCCEEeccCC
Confidence            7899999988653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.29  E-value=2.9e-07  Score=91.14  Aligned_cols=147  Identities=10%  Similarity=-0.028  Sum_probs=104.5

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-C-ccccccceeeecccccccccccchhhhcccccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-S-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      +|++|.++++ +++.++......+++|+.|+++++. +..+++. . ..+++|++|++++|. ++.+   +....+++|+
T Consensus       121 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~~l~~L~  194 (317)
T 3o53_A          121 GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV---KGQVVFAKLK  194 (317)
T ss_dssp             SCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE---ECCCCCTTCC
T ss_pred             CCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc---ccccccccCC
Confidence            5666766665 3555544344668999999999885 5554332 2 357899999999984 5554   3334589999


Q ss_pred             eeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCc-cccccCCcCCC
Q 037562          101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNM-KIFSGGELSTP  179 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l-~~~p~~~~~~~  179 (670)
                      +|+++++. ++.++.        ....+++|+.|.++++ .++.++..  ...+++|+.|++.+++-- ..+|......+
T Consensus       195 ~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~L~~N-~l~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          195 TLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             EEECCSSC-CCEECG--------GGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             EEECCCCc-CCcchh--------hhcccCcccEEECcCC-cccchhhH--hhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence            99999884 444432        2346899999999987 67776653  556899999999998765 45666666677


Q ss_pred             Cccceeee
Q 037562          180 NLHKVQLS  187 (670)
Q Consensus       180 ~L~~l~i~  187 (670)
                      +|+.|++.
T Consensus       263 ~L~~l~l~  270 (317)
T 3o53_A          263 RVQTVAKQ  270 (317)
T ss_dssp             HHHHHHHH
T ss_pred             cceEEECC
Confidence            88888775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.28  E-value=1.1e-06  Score=92.33  Aligned_cols=153  Identities=15%  Similarity=0.122  Sum_probs=91.2

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|+++++ +++.++......+++|+.|++++|. +...++ +..+++|+.|++++| .++.+.      ..++|++|
T Consensus        35 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~------~~~~L~~L  104 (487)
T 3oja_A           35 NVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELL------VGPSIETL  104 (487)
T ss_dssp             GCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEE------ECTTCCEE
T ss_pred             CccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCC------CCCCcCEE
Confidence            7999999987 4666665445788999999998875 545444 677889999999888 344431      23666777


Q ss_pred             ccccccccceecc-----------ccc---cccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCc
Q 037562          103 EIESCDKITEIVL-----------VDD---VVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNM  168 (670)
Q Consensus       103 ~i~~c~~l~~~~~-----------~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l  168 (670)
                      ++++|. +..++.           ...   +..+.....+++|+.|.++++ .++..........+++|+.|++++|. +
T Consensus       105 ~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l  181 (487)
T 3oja_A          105 HAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-I  181 (487)
T ss_dssp             ECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-C
T ss_pred             ECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-c
Confidence            666653 211110           000   000112234566666666654 23332222112246778888887775 5


Q ss_pred             cccccCCcCCCCccceeeeec
Q 037562          169 KIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       169 ~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      ..+|... .+++|+.|++++.
T Consensus       182 ~~~~~~~-~l~~L~~L~Ls~N  201 (487)
T 3oja_A          182 YDVKGQV-VFAKLKTLDLSSN  201 (487)
T ss_dssp             CEEECCC-CCTTCCEEECCSS
T ss_pred             ccccccc-cCCCCCEEECCCC
Confidence            5555433 3777888877654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.28  E-value=3.9e-06  Score=80.27  Aligned_cols=121  Identities=15%  Similarity=0.116  Sum_probs=92.3

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .+|+.|.++++ +++.++.  ...+++|+.|+++++. +..++....  ++|+.|++++| +++.+   +.+..+++|++
T Consensus        63 ~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N-~l~~~---~~l~~l~~L~~  132 (263)
T 1xeu_A           63 TNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLDNN-ELRDT---DSLIHLKNLEI  132 (263)
T ss_dssp             TTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECCSS-CCSBS---GGGTTCTTCCE
T ss_pred             CCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEccCC-ccCCC---hhhcCcccccE
Confidence            48999999987 5777665  4689999999999984 666654333  89999999998 56665   45778999999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      |+++++. ++.+.         ....+++|+.|.++++ .++.+   .....+++|+.|++.+++
T Consensus       133 L~Ls~N~-i~~~~---------~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          133 LSIRNNK-LKSIV---------MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EECTTSC-CCBCG---------GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             EECCCCc-CCCCh---------HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence            9999875 44431         2346889999999886 34444   235678999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.28  E-value=3.2e-06  Score=91.02  Aligned_cols=50  Identities=16%  Similarity=0.044  Sum_probs=25.7

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHC   81 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c   81 (670)
                      +|+.|.+.+| +++.++.    .+++|++|++++|. +..+|.   .+++|++|++++|
T Consensus        62 ~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           62 HITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             TCSEEEECSC-CCSCCCC----CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC
T ss_pred             CCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC
Confidence            5555555555 3444432    34556666665553 444443   3455555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.28  E-value=5.9e-07  Score=80.24  Aligned_cols=79  Identities=10%  Similarity=0.122  Sum_probs=39.3

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|.+.++ +++.++. .....++|+.|+++++. +..+ ..+..+++|+.|+++++ .++.+ ++.....+++|++|
T Consensus        20 ~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           20 RDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTEL   93 (176)
T ss_dssp             SCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEE
T ss_pred             CceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEE
Confidence            5666666665 3444432 11233366666666653 4444 34445556666666655 23333 11223455566666


Q ss_pred             ccccc
Q 037562          103 EIESC  107 (670)
Q Consensus       103 ~i~~c  107 (670)
                      +++++
T Consensus        94 ~L~~N   98 (176)
T 1a9n_A           94 ILTNN   98 (176)
T ss_dssp             ECCSC
T ss_pred             ECCCC
Confidence            55554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.27  E-value=3.8e-06  Score=78.58  Aligned_cols=147  Identities=18%  Similarity=0.163  Sum_probs=103.5

Q ss_pred             ccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           24 VKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        24 L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      ...++.++ .+++.+|..   ..++|+.|+++++. +..+ +..+..+++|++|+++++. ++.+ +...+..+++|++|
T Consensus        21 ~~~v~c~~-~~l~~ip~~---~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i-~~~~~~~l~~L~~L   93 (229)
T 3e6j_A           21 GTTVDCRS-KRHASVPAG---IPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGAL-PVGVFDSLTQLTVL   93 (229)
T ss_dssp             TTEEECTT-SCCSSCCSC---CCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEE
T ss_pred             CCEeEccC-CCcCccCCC---CCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCc-ChhhcccCCCcCEE
Confidence            34454433 346676653   35899999999875 5555 4445678999999999884 5554 23345789999999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNL  181 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L  181 (670)
                      +++++ .++.++.       .....+++|+.|.+.+. +++.++..  ...+++|+.|+++++ ++..+|.. ...+++|
T Consensus        94 ~Ls~N-~l~~l~~-------~~~~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  161 (229)
T 3e6j_A           94 DLGTN-QLTVLPS-------AVFDRLVHLKELFMCCN-KLTELPRG--IERLTHLTHLALDQN-QLKSIPHGAFDRLSSL  161 (229)
T ss_dssp             ECCSS-CCCCCCT-------TTTTTCTTCCEEECCSS-CCCSCCTT--GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             ECCCC-cCCccCh-------hHhCcchhhCeEeccCC-cccccCcc--cccCCCCCEEECCCC-cCCccCHHHHhCCCCC
Confidence            99987 4554431       12245889999999875 46666553  467899999999987 67778764 4568899


Q ss_pred             cceeeeec
Q 037562          182 HKVQLSRW  189 (670)
Q Consensus       182 ~~l~i~~~  189 (670)
                      +.|++++.
T Consensus       162 ~~L~l~~N  169 (229)
T 3e6j_A          162 THAYLFGN  169 (229)
T ss_dssp             CEEECTTS
T ss_pred             CEEEeeCC
Confidence            99988653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.27  E-value=2.4e-06  Score=96.67  Aligned_cols=133  Identities=12%  Similarity=0.086  Sum_probs=75.6

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|+.|+++++ .++.+.......+++|+.|++++|.....+ +..+..+++|+.|++++|. +..+ .+..+..+++|++
T Consensus        25 ~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~  101 (844)
T 3j0a_A           25 TTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFL-HPDAFQGLFHLFE  101 (844)
T ss_dssp             TCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEE-CTTSSCSCSSCCC
T ss_pred             CcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-Cccc-CHhHccCCcccCE
Confidence            7777777766 355555444566777788888777655555 3445667777777777763 3333 1344567777777


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecC
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYC  165 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C  165 (670)
                      |++++|.--..++.      ......+++|+.|.++++. ++.+..+.....+++|+.|++.++
T Consensus       102 L~Ls~n~l~~~~~~------~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          102 LRLYFCGLSDAVLK------DGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             EECTTCCCSSCCST------TCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             eeCcCCCCCccccc------CccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence            77777642221211      0112346666666666543 222222112345566666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.25  E-value=3.3e-06  Score=78.93  Aligned_cols=130  Identities=21%  Similarity=0.155  Sum_probs=97.6

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccc
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      .+|+.|.++++ +++.+.......+++|+.|+++++. +..+++. +..+++|+.|+++++ +++.+ ++..+..+++|+
T Consensus        40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~  115 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVL-PSAVFDRLVHLK  115 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCC
T ss_pred             CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCcc-ChhHhCcchhhC
Confidence            38999999987 4666654445678999999999985 6677655 367899999999998 56665 223457899999


Q ss_pred             eeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      +|+++++. +..++        .....+++|+.|.+.+. +++.++.. ....+++|+.|++.+.|
T Consensus       116 ~L~Ls~N~-l~~lp--------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          116 ELFMCCNK-LTELP--------RGIERLTHLTHLALDQN-QLKSIPHG-AFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EEECCSSC-CCSCC--------TTGGGCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECTTSC
T ss_pred             eEeccCCc-ccccC--------cccccCCCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCC
Confidence            99998874 54443        12356899999999985 67766653 34568999999998754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.25  E-value=2.4e-06  Score=82.59  Aligned_cols=135  Identities=15%  Similarity=0.148  Sum_probs=88.9

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|++|+++++ +++.++......+++|++|+++++ .+..+++ .+..+++|++|+++++. ++.+ ++..+..+++|++
T Consensus        29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~  104 (276)
T 2z62_A           29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSL-ALGAFSGLSSLQK  104 (276)
T ss_dssp             TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEE-CTTTTTTCTTCCE
T ss_pred             CccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCcc-ChhhhcCCccccE
Confidence            7888988877 466666544567888999999888 4656654 45678889999998874 4443 2234567889999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccc
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIF  171 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~  171 (670)
                      |++.++. +..+.       ......+++|++|.+.++. ++.+........+++|+.|++.+|. +..+
T Consensus       105 L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~  164 (276)
T 2z62_A          105 LVAVETN-LASLE-------NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSI  164 (276)
T ss_dssp             EECTTSC-CCCST-------TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred             EECCCCC-ccccC-------chhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcC
Confidence            9888774 32221       1123457888888888753 3332211234567888888888874 3434

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.24  E-value=2.5e-06  Score=93.58  Aligned_cols=133  Identities=15%  Similarity=0.171  Sum_probs=90.3

Q ss_pred             ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccc
Q 037562           44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQD  123 (670)
Q Consensus        44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~  123 (670)
                      ..+++|+.++++.+.--...+.....+++|+.|+++++.....+. +..+..+++|++|++++|. ++.++.       .
T Consensus       442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~-L~~l~~-------~  512 (635)
T 4g8a_A          442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQLSP-------T  512 (635)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEECT-------T
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccC-chhhhhccccCEEECCCCc-cCCcCh-------H
Confidence            345666666666554222223334567889999999987666543 3456788999999999984 655532       2


Q ss_pred             ccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccc-cCCcCC-CCccceeeee
Q 037562          124 EVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFS-GGELST-PNLHKVQLSR  188 (670)
Q Consensus       124 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p-~~~~~~-~~L~~l~i~~  188 (670)
                      ....+++|+.|.|++. +++.+... ....+++|+.|+++++. +..++ ..+..+ ++|+.|++++
T Consensus       513 ~f~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          513 AFNSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             TTTTCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTT
T ss_pred             HHcCCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeC
Confidence            2345889999999986 56666543 24568999999999874 55554 444455 6899999865

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.23  E-value=4e-06  Score=84.19  Aligned_cols=161  Identities=16%  Similarity=0.114  Sum_probs=95.5

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      ++++|++++. +++.++......+++|++|+++++.-++.++.. +..+++|.++.+.++.+++.+. +..+..+++|++
T Consensus        31 ~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~  108 (350)
T 4ay9_X           31 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQY  108 (350)
T ss_dssp             TCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCE
T ss_pred             CCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccccc
Confidence            7888888875 588877655567888999999888766666543 2456777777777788887763 234567888888


Q ss_pred             eccccccccceeccccc------------c---ccccccccc----cccccccccccccccccccCCcccCCCCccEEeE
Q 037562          102 MEIESCDKITEIVLVDD------------V---VAQDEVITF----RELKELNLLQMQNLISFCSGNCAFTFPSLEILVV  162 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~------------~---~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i  162 (670)
                      |++.++. ++.++....            .   ........|    ..|+.|.+.+ .+++.++.+  .+..++|++|.+
T Consensus       109 L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~--~f~~~~L~~l~l  184 (350)
T 4ay9_X          109 LLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS--AFNGTQLDELNL  184 (350)
T ss_dssp             EEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT--SSTTEEEEEEEC
T ss_pred             ccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh--hccccchhHHhh
Confidence            8887663 222211000            0   000000011    1233444433 234444332  234456777777


Q ss_pred             ecCCCccccccCC-cCCCCccceeeeec
Q 037562          163 NYCPNMKIFSGGE-LSTPNLHKVQLSRW  189 (670)
Q Consensus       163 ~~C~~l~~~p~~~-~~~~~L~~l~i~~~  189 (670)
                      .++..++.+|.+. ..+++|+.|++++.
T Consensus       185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          185 SDNNNLEELPNDVFHGASGPVILDISRT  212 (350)
T ss_dssp             TTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred             ccCCcccCCCHHHhccCcccchhhcCCC
Confidence            7777777777653 45677777777543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.23  E-value=7.4e-06  Score=75.35  Aligned_cols=130  Identities=18%  Similarity=0.194  Sum_probs=96.0

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|++|.++++ +++.++......+++|++|+++++ .+..+++. +..+++|++|+++++ +++.+ ++..+..+++|++
T Consensus        29 ~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~  104 (208)
T 2o6s_A           29 QTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLKE  104 (208)
T ss_dssp             TCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCE
T ss_pred             CCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCcc-CHhHhcCccCCCE
Confidence            8999999988 577766554567899999999987 56677665 367899999999998 45554 2234578999999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      |+++++. ++.++.       .....+++|+.|.+.+. .++.++.. ....+++|+.|++.+++
T Consensus       105 L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          105 LALNTNQ-LQSLPD-------GVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             EECCSSC-CCCCCT-------TTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSCC
T ss_pred             EEcCCCc-CcccCH-------hHhccCCcCCEEECCCC-ccceeCHH-HhccCCCccEEEecCCC
Confidence            9998874 444321       12345889999999986 46655542 24568999999999874

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.21  E-value=1.3e-06  Score=73.54  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=84.8

Q ss_pred             hcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhh
Q 037562          211 KKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFL  290 (670)
Q Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll  290 (670)
                      ..+...+++....++..+.......+-..++.|++.++++++.++..|+++|.++..            ...++.|+.++
T Consensus        15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------~~a~~~L~~~L   82 (131)
T 1te4_A           15 VPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQD------------ERAVEPLIKLL   82 (131)
T ss_dssp             ------CCSSCCCSSSSCCSSTTSCSSTTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------------HHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCchHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHH
Confidence            344445555555555444432222222347899999999999999999999987732            12488899999


Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 037562          291 MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNV  351 (670)
Q Consensus       291 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  351 (670)
                      ++++ +.||..|+++|+.+..  +         ..++.|+.+++++++.++..|+++|+++
T Consensus        83 ~d~~-~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           83 EDDS-GFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             HHCC-THHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             cCCC-HHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            9888 8999999999999964  2         3578999999999999999999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.21  E-value=9.2e-07  Score=96.14  Aligned_cols=82  Identities=9%  Similarity=-0.038  Sum_probs=42.8

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCC--------------------------ccccCCCccccccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHL--------------------------INLVPSSTSFQNLT   74 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l--------------------------~~~~~~~~~~~~L~   74 (670)
                      ..+|++|++.+|. +..++.. ...+++|++|.++++...                          ..++.....+++|+
T Consensus       219 ~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          219 CRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR  296 (592)
T ss_dssp             CTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred             CCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence            3478888888864 3333321 244566666666543221                          12222233456677


Q ss_pred             eeeecccccccccccchhhhcccccceeccc
Q 037562           75 NLVVSHCKRLKIVLTSSIAKTLVRLRYMEIE  105 (670)
Q Consensus        75 ~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~  105 (670)
                      +|++++|. +........+..+++|++|++.
T Consensus       297 ~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          297 KLDLLYAL-LETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             EEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred             EEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence            77777765 4332111224556666666664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.20  E-value=5.1e-06  Score=83.41  Aligned_cols=140  Identities=13%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             CcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562           34 RLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE  112 (670)
Q Consensus        34 ~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  112 (670)
                      +|+++|..   -.+++++|++++. +++.+++. +..+++|++|+++++.-++.+ +...+.++++|+++.+.++.++..
T Consensus        20 ~Lt~iP~~---l~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~   94 (350)
T 4ay9_X           20 KVTEIPSD---LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLY   94 (350)
T ss_dssp             TCCSCCTT---CCTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCE
T ss_pred             CCCccCcC---cCCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccc
Confidence            57888753   3578999999986 58888875 577999999999999766654 223456788999888888888887


Q ss_pred             eccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCc-C-CCCccceeee
Q 037562          113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGEL-S-TPNLHKVQLS  187 (670)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~-~-~~~L~~l~i~  187 (670)
                      +..       .....+++|+.|.+.++ +++.++.. .......+..|.+.++.++..+|.... . ...++.|+++
T Consensus        95 l~~-------~~f~~l~~L~~L~l~~n-~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           95 INP-------EAFQNLPNLQYLLISNT-GIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             ECT-------TSBCCCTTCCEEEEEEE-CCSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             cCc-------hhhhhcccccccccccc-ccccCCch-hhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence            742       12234677888877765 34444332 122344566677777777776665422 1 2345555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.20  E-value=4.2e-07  Score=98.80  Aligned_cols=36  Identities=17%  Similarity=0.318  Sum_probs=17.5

Q ss_pred             CCCccEEeEecCCCcc--ccccCCcCCCCccceeeeecc
Q 037562          154 FPSLEILVVNYCPNMK--IFSGGELSTPNLHKVQLSRWD  190 (670)
Q Consensus       154 ~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~i~~~~  190 (670)
                      +|+|++|++++|+ +.  .++.....+++|++|+++++.
T Consensus       487 ~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          487 CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            4556666666665 32  122222234566666555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.19  E-value=5.8e-06  Score=88.16  Aligned_cols=153  Identities=11%  Similarity=0.106  Sum_probs=86.2

Q ss_pred             ccccEEEeccCcCcccccccccccC---CCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccc
Q 037562           22 MEVKISEAYNCYRLENILIEESSVM---NNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVR   98 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~---~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~   98 (670)
                      .+|+.+++.++.-  .++......+   ++|+.|+++++. +...+. ...+++|++|++++|. +.... +..+..+++
T Consensus       276 ~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~  349 (520)
T 2z7x_B          276 KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC-PSKISPFLHLDFSNNL-LTDTV-FENCGHLTE  349 (520)
T ss_dssp             CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSC-CCTTT-TTTCCCCSS
T ss_pred             ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccc-hhhCCcccEEEeECCc-cChhh-hhhhccCCC
Confidence            3777777776653  4442222222   679999999986 333321 1578999999999995 44322 345678999


Q ss_pred             cceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCC----------------------CC
Q 037562           99 LRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTF----------------------PS  156 (670)
Q Consensus        99 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~----------------------~~  156 (670)
                      |++|++++|. +..+..     .+.....+++|+.|+++++.--..++.+ ....+                      ++
T Consensus       350 L~~L~L~~N~-l~~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~  422 (520)
T 2z7x_B          350 LETLILQMNQ-LKELSK-----IAEMTTQMKSLQQLDISQNSVSYDEKKG-DCSWTKSLLSLNMSSNILTDTIFRCLPPR  422 (520)
T ss_dssp             CCEEECCSSC-CCBHHH-----HHHHHTTCTTCCEEECCSSCCBCCGGGC-SCCCCTTCCEEECCSSCCCGGGGGSCCTT
T ss_pred             CCEEEccCCc-cCcccc-----chHHHhhCCCCCEEECCCCcCCcccccc-hhccCccCCEEECcCCCCCcchhhhhccc
Confidence            9999998875 222110     0001123455555555543322112211 01122                      46


Q ss_pred             ccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562          157 LEILVVNYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       157 L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      |+.|++++| +++.+|.+...+++|+.|++++
T Consensus       423 L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~  453 (520)
T 2z7x_B          423 IKVLDLHSN-KIKSIPKQVVKLEALQELNVAS  453 (520)
T ss_dssp             CCEEECCSS-CCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCEEECCCC-cccccchhhhcCCCCCEEECCC
Confidence            666666665 4556666555666677666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.17  E-value=6.7e-06  Score=87.38  Aligned_cols=70  Identities=17%  Similarity=0.173  Sum_probs=32.4

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|++|.++++ +++.++    ..+++|+.|+++++ .+..+|. +.  ++|++|+++++ +++.+   +.  .+++|+.|
T Consensus        81 ~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~--~~L~~L~Ls~N-~l~~l---p~--~l~~L~~L  145 (571)
T 3cvr_A           81 QITVLEITQN-ALISLP----ELPASLEYLDACDN-RLSTLPE-LP--ASLKHLDVDNN-QLTML---PE--LPALLEYI  145 (571)
T ss_dssp             TCSEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CCSCC---CC--CCTTCCEE
T ss_pred             CCCEEECcCC-CCcccc----cccCCCCEEEccCC-CCCCcch-hh--cCCCEEECCCC-cCCCC---CC--cCccccEE
Confidence            4555555544 244333    23455555555554 2333333 11  15555555554 23332   11  45566666


Q ss_pred             ccccc
Q 037562          103 EIESC  107 (670)
Q Consensus       103 ~i~~c  107 (670)
                      +++++
T Consensus       146 ~Ls~N  150 (571)
T 3cvr_A          146 NADNN  150 (571)
T ss_dssp             ECCSS
T ss_pred             eCCCC
Confidence            66554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.17  E-value=0.00011  Score=84.33  Aligned_cols=388  Identities=10%  Similarity=0.083  Sum_probs=217.0

Q ss_pred             hccHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCC---------CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 037562          237 LEILPAMVDGVWS--DDNSLQLEATTLFINLLSFDR---------SPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWA  305 (670)
Q Consensus       237 ~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~  305 (670)
                      .+....+++.+.+  .+..+|..|+-.|.+.....-         ++..+..++.    .++..+.+++ ..+|..++.+
T Consensus        34 p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~  108 (960)
T 1wa5_C           34 DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEA  108 (960)
T ss_dssp             TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHH
Confidence            3455667777653  457899999999998865310         1112233333    3455554556 7999999999


Q ss_pred             HHHHcCCC-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC------chhHHHH---HhcCChHHHHHH-
Q 037562          306 LTNIASGT-SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS------PRCRDLV---LSQGALIPLLAE-  374 (670)
Q Consensus       306 L~~l~~~~-~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------~~~~~~i---~~~~~i~~Ll~~-  374 (670)
                      ++.++..+ +..     -.+.++.+++.+.+++...+..++.++..++...      ++.+..+   .. ...++++.+ 
T Consensus       109 ia~ia~~d~p~~-----Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~-~~~~~ll~~~  182 (960)
T 1wa5_C          109 ISSIADSDFPDR-----WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLD-VFTAPFLNLL  182 (960)
T ss_dssp             HHHHHHHHSTTT-----CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHhhCccc-----hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH-HHHHHHHHHH
Confidence            99998721 111     1467899999999888888999999999998532      1122111   11 123434443 


Q ss_pred             ------hcccCCh--------hHHHHHHHHHHhhhcCC-CCCChhhhhhhHHHHHHhhccC------C---------hhH
Q 037562          375 ------LNENANL--------SMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSN------D---------EEV  424 (670)
Q Consensus       375 ------l~~~~~~--------~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~------~---------~~v  424 (670)
                            +.+....        .+...++.++..+.... +..........++.+..++...      +         ..+
T Consensus       183 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~v  262 (960)
T 1wa5_C          183 KTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKV  262 (960)
T ss_dssp             HHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHH
Confidence                  3222111        23334666666665433 2111112244556666666421      1         246


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-----CCCccchhHHHHHHHHhhcCCchhhHHHHh-CCChHHHH
Q 037562          425 LTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-----HSSSSVLTPALRTIRNIVKGDDFQTQCIIN-CGALPYFL  498 (670)
Q Consensus       425 ~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~~~~L~  498 (670)
                      +..++.++..+....++....... .+++.+...+.     ..++.++..|+..+..++.... ... ++. ...++.++
T Consensus       263 k~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~~-~~~~~~~l~~li  339 (960)
T 1wa5_C          263 KSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YFE-IFNNESAMNNIT  339 (960)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HHG-GGCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HHH-HHcCchHHHHHH
Confidence            778888888877555544333332 45555566554     2345688889988888875322 111 111 12222222


Q ss_pred             -----Hhhcc----------------------CCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh------
Q 037562          499 -----DMLVH----------------------NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ------  545 (670)
Q Consensus       499 -----~~l~~----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~------  545 (670)
                           ..+.-                      +.....|..|..++..++...++..   .. .+++.+...+.      
T Consensus       340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~  415 (960)
T 1wa5_C          340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDP  415 (960)
T ss_dssp             HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC--
T ss_pred             HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCc
Confidence                 22210                      1022467778888888876443221   11 13334444444      


Q ss_pred             cCChhHHHHHHHHHHHhcCCCC-HH----------HHHHHHHcCCcHHHHhhccCC---ChHHHHHHHHHHHHHHHhhhh
Q 037562          546 NTEFDTKKEAAWAISNATKFGT-HE----------QIKHLVREGCVKPLCDLLLCA---DPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       546 ~~~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      +.+...+..|..+++.++..+. ..          ....++...+++    .+.++   ++-+|..++++++++...-. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~-  490 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT-  490 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC-
Confidence            4567899999999999975421 00          111221111222    23445   88999999999998765321 


Q ss_pred             hhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562          612 EMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSS  663 (670)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~  663 (670)
                                    .+.+  ...++.+.....+++..|+..|..++.++...
T Consensus       491 --------------~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          491 --------------KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             --------------HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             --------------HHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence                          0111  11245555555677899999999999998764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.16  E-value=3.7e-06  Score=95.18  Aligned_cols=159  Identities=16%  Similarity=0.109  Sum_probs=96.0

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhccccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      ..+|+.|++++|.....++......+++|+.|+++++. +..+ |..+..+++|++|++++|.--........+..+++|
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            34899999999977777755445788999999999886 4454 556778899999999998432222222236788999


Q ss_pred             ceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCC--CCccEEeEecCCCccccccCCcC
Q 037562          100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTF--PSLEILVVNYCPNMKIFSGGELS  177 (670)
Q Consensus       100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~L~~L~i~~C~~l~~~p~~~~~  177 (670)
                      ++|+++++.- ..+.      .......+++|++|.+.++. ++..... ....+  ++|+.|.+.+++--...|.....
T Consensus       126 ~~L~Ls~N~l-~~~~------~~~~~~~L~~L~~L~Ls~N~-i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~  196 (844)
T 3j0a_A          126 TRLDLSKNQI-RSLY------LHPSFGKLNSLKSIDFSSNQ-IFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGK  196 (844)
T ss_dssp             CEEEEESCCC-CCCC------CCGGGGTCSSCCEEEEESSC-CCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred             CEEECCCCcc-cccc------cchhHhhCCCCCEEECCCCc-CCeeCHH-HcccccCCccceEECCCCccccccccchhh
Confidence            9999988752 2221      01123457777777777642 2222111 11112  56666666666543333433322


Q ss_pred             CCC------ccceeeeec
Q 037562          178 TPN------LHKVQLSRW  189 (670)
Q Consensus       178 ~~~------L~~l~i~~~  189 (670)
                      +++      |+.|++++.
T Consensus       197 ~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          197 CMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             SSCTTTTCCBSEEBCSSC
T ss_pred             cCCccccCceeEEecCCC
Confidence            222      566665543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.15  E-value=7.9e-06  Score=84.98  Aligned_cols=56  Identities=16%  Similarity=0.058  Sum_probs=24.9

Q ss_pred             ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccc
Q 037562           44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC  107 (670)
Q Consensus        44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  107 (670)
                      ..+++|++|+++++. +..+|..   +++|++|++++| +++.+   +.+..+++|++|++++|
T Consensus       150 ~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n-~l~~l---~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNN-QLEEL---PELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSSC---CCCTTCTTCCEEECCSS
T ss_pred             CCCCCCCEEECCCCc-CcccCCC---cccccEEECcCC-cCCcC---ccccCCCCCCEEECCCC
Confidence            344455555554442 3333221   234555555544 23332   22345555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.13  E-value=4.8e-06  Score=91.28  Aligned_cols=126  Identities=21%  Similarity=0.175  Sum_probs=54.2

Q ss_pred             CCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccc
Q 037562           48 NLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVI  126 (670)
Q Consensus        48 ~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~  126 (670)
                      ++++|++++. .++.+++ .+..+++|++|++++| +++.+. +..+.++++|++|+++++. ++.++.       ....
T Consensus        53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~-------~~f~  121 (635)
T 4g8a_A           53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNP-IQSLAL-------GAFS  121 (635)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCC-CCEECG-------GGGT
T ss_pred             CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCH-------HHhc
Confidence            4555555543 3444443 2344555555555555 233331 1223445555555555542 333321       0112


Q ss_pred             cccccccccccccccccccccCCcccCCCCccEEeEecCCCccc--cccCCcCCCCccceeee
Q 037562          127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKI--FSGGELSTPNLHKVQLS  187 (670)
Q Consensus       127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~--~p~~~~~~~~L~~l~i~  187 (670)
                      .+++|++|.+.++ +++.++.. ....+++|+.|++.++. ++.  .|.....+++|++|+++
T Consensus       122 ~L~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          122 GLSSLQKLVAVET-NLASLENF-PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             TCTTCCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCCCCCEEECCCC-cCCCCChh-hhhcCcccCeeccccCc-cccCCCchhhccchhhhhhccc
Confidence            3445555555544 23333321 12344555555555442 221  23333334555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=1e-06  Score=76.93  Aligned_cols=39  Identities=18%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             ccccccccccccccccccCCcccCCCCccEEeEecCCCcc
Q 037562          130 ELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMK  169 (670)
Q Consensus       130 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~  169 (670)
                      +|++|+|++|++++.-... ....+|+|++|++++||+++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCC
T ss_pred             CCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCC
Confidence            4555555555555543221 11235667777777776655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.11  E-value=2.2e-06  Score=74.04  Aligned_cols=107  Identities=21%  Similarity=0.200  Sum_probs=73.2

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcc-ccCCCccccccceeeecccccccccccchhhhccccc
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLIN-LVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL   99 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L   99 (670)
                      ..+|+.|.+.+| +++.+  .....+++|+.|+++++. +.. ++.....+++|++|++++|. ++.+..+..+..+++|
T Consensus        41 l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           41 FEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENL  115 (149)
T ss_dssp             CTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTC
T ss_pred             cCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCC
Confidence            348999999988 57666  335678999999999986 444 44444558999999999985 5554223557789999


Q ss_pred             ceeccccccccceecccccccccccccccccccccccc
Q 037562          100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLL  137 (670)
Q Consensus       100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  137 (670)
                      ++|++++|+ +..++.    ........+|+|+.|+++
T Consensus       116 ~~L~l~~N~-l~~~~~----~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          116 KSLDLFNCE-VTNLND----YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTCG-GGGSTT----HHHHHHHHCTTCCEETTB
T ss_pred             CEEeCcCCc-ccchHH----HHHHHHHHCCCcccccCC
Confidence            999999984 433321    000122346677776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.11  E-value=1.3e-05  Score=88.51  Aligned_cols=34  Identities=15%  Similarity=0.088  Sum_probs=15.0

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecC
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCC   57 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c   57 (670)
                      .|+.|.++++. +..++......+++|+.|+++++
T Consensus       382 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N  415 (680)
T 1ziw_A          382 PLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLN  415 (680)
T ss_dssp             CCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCceEECCCCC-CCeEChhhhhCCCCCCEEeCCCC
Confidence            45555555542 33332222234445555555444

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.11  E-value=0.00051  Score=78.87  Aligned_cols=382  Identities=10%  Similarity=0.037  Sum_probs=211.5

Q ss_pred             chhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562          201 LNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS  280 (670)
Q Consensus       201 ~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  280 (670)
                      .+..+|..+.-.+++.+...-... .....-+-+.....=..+++.+.++...++..++.++..++..+-...+     .
T Consensus        49 ~~~~vR~~A~i~lkn~i~~~w~~~-~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p  122 (960)
T 1wa5_C           49 LPLSTRLAGALFFKNFIKRKWVDE-NGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----P  122 (960)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSBCS-SSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----T
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCc-ccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----h
Confidence            355678888878887776543211 0000000011111123456666656688999999999998775312212     2


Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC------hhhHHHH---HhCCChHHHHH-------hhCCCCH------
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT------SENTKVV---IDHGAVPIFVK-------LLASPSV------  338 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~------~~~~~~i---~~~~~i~~L~~-------lL~~~~~------  338 (670)
                      +.++.+++.+++++ +..+..++.++..++...      ++.+..+   +. ...+.+++       .+.++..      
T Consensus       123 ~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~  200 (960)
T 1wa5_C          123 TLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLN  200 (960)
T ss_dssp             THHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHH
T ss_pred             HHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            46888999998877 688899999999988622      1222211   11 12333333       2444321      


Q ss_pred             ---HHHHHHHHHHHHhhC-CCchh-HHHHHhcCChHHHHHHhccc-----CC---------hhHHHHHHHHHHhhhcCCC
Q 037562          339 ---DVRKQTVWALGNVAG-DSPRC-RDLVLSQGALIPLLAELNEN-----AN---------LSMLRTATWTLFNFCRGKP  399 (670)
Q Consensus       339 ---~v~~~a~~~L~~l~~-~~~~~-~~~i~~~~~i~~Ll~~l~~~-----~~---------~~~~~~a~~~L~~l~~~~~  399 (670)
                         .+...++.+++++.. +.+.. .+.+.  ..++.+.+.+...     .+         ..+++.++.++..+....+
T Consensus       201 ~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~  278 (960)
T 1wa5_C          201 ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE  278 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence               223346667766653 22321 11111  1233444444221     11         1466778888887775432


Q ss_pred             CCChhhhhhhHHHHHHhhc-----cCChhHHHHHHHHHHHhccCChHHHH-----HHHHcCCH-HHHHHhcC--------
Q 037562          400 QPPFNQVRPALPVLAQLIR-----SNDEEVLTDACWALSYLSDGTNDKVQ-----AVIEAGVY-PRLVELLG--------  460 (670)
Q Consensus       400 ~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~al~~L~~l~~~~~~~~~-----~~~~~~~i-~~L~~lL~--------  460 (670)
                      ..-......+++.....+.     ..++.++..++..+..++..... ..     ..+. .++ ..+++.+.        
T Consensus       279 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~-~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~  356 (960)
T 1wa5_C          279 DVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY-FEIFNNESAMN-NITEQIILPNVTLREEDVEL  356 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH-HGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH-HHHHcCchHHH-HHHHHHhHHhcCCCHHHHHH
Confidence            2111223445555555554     34578888899888887754221 11     1111 122 22333332        


Q ss_pred             ---------------CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc------cCCchhHHHHHHHHHHH
Q 037562          461 ---------------HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV------HNHEESIKKEVSWIISN  519 (670)
Q Consensus       461 ---------------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~------~~~~~~v~~~a~~~L~~  519 (670)
                                     +...+.|..|..+|..++...++.   ++. .+++.+.+.+.      +. +...|+.|..+++.
T Consensus       357 w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---v~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~alga  431 (960)
T 1wa5_C          357 FEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---VTN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTA  431 (960)
T ss_dssp             TTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---HHH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHH
Confidence                           112257788888888888754321   111 13444445554      34 67889999999999


Q ss_pred             hhcCC--HH----------HHHHHHhcCChHHHHHHhhcC---ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHH
Q 037562          520 ITCGN--RE----------QIQAVIDSGLIGPIVNLLQNT---EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLC  584 (670)
Q Consensus       520 l~~~~--~~----------~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~  584 (670)
                      ++.+.  ..          ....++...+    +..+.++   ++.+|..|+++++.++..-.++....     +++.++
T Consensus       432 ia~~~~~~~~~~~~~~~~~~l~~~l~~~v----~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~  502 (960)
T 1wa5_C          432 LAINGNITNAGVSSTNNLLNVVDFFTKEI----APDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILA  502 (960)
T ss_dssp             HHBSSCCBTTBCCCBCTTCCHHHHHHHHT----HHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHH
T ss_pred             HHHHhccccCCcccccccccHHHHHHHHh----HHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHH
Confidence            97531  10          1222221112    3334545   78999999999999988644443333     577888


Q ss_pred             hhccCCChHHHHHHHHHHHHHHHh
Q 037562          585 DLLLCADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       585 ~ll~~~~~~v~~~a~~~l~~l~~~  608 (670)
                      ..+.++++.|+..|+.++.+++..
T Consensus       503 ~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          503 TFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCChhHHHHHHHHHHHHHhc
Confidence            888888899999999999998864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.11  E-value=1.5e-05  Score=88.18  Aligned_cols=57  Identities=18%  Similarity=0.150  Sum_probs=32.3

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeeccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHC   81 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c   81 (670)
                      +|++|+++++ +++.++......+++|++|+++++. +..+++ .+..+++|++|++++|
T Consensus        74 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           74 MLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSS
T ss_pred             CcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCC
Confidence            6777777666 4555554334556666666666653 334432 3345556666666555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.09  E-value=1.3e-05  Score=74.23  Aligned_cols=138  Identities=12%  Similarity=0.138  Sum_probs=97.2

Q ss_pred             CcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562           34 RLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE  112 (670)
Q Consensus        34 ~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  112 (670)
                      +++.+|..   ..++|+.|++.++. +..+++ .+..+++|+.|+++++. ++.+. +..+..+++|++|+++++. ++.
T Consensus        22 ~l~~iP~~---l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~   94 (220)
T 2v9t_B           22 GLTEIPTN---LPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQ-ISELA-PDAFQGLRSLNSLVLYGNK-ITE   94 (220)
T ss_dssp             CCSSCCSS---CCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSC-CCEEC-TTTTTTCSSCCEEECCSSC-CCC
T ss_pred             CcCcCCCc---cCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCc-CCCcC-HHHhhCCcCCCEEECCCCc-CCc
Confidence            46666643   34789999998874 666665 45678899999999883 44442 3456789999999998874 444


Q ss_pred             eccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeee
Q 037562          113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSR  188 (670)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~  188 (670)
                      ++.       .....+++|+.|.+.+. .++.+... ....+++|+.|++.++. ++.+|.+ ...+++|+.|++++
T Consensus        95 l~~-------~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           95 LPK-------SLFEGLFSLQLLLLNAN-KINCLRVD-AFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CCT-------TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             cCH-------hHccCCCCCCEEECCCC-CCCEeCHH-HcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence            431       11235788999999876 35555432 34568999999999874 6667654 55688999998864

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.08  E-value=8.5e-05  Score=70.66  Aligned_cols=187  Identities=11%  Similarity=0.080  Sum_probs=138.4

Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562          410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII  489 (670)
Q Consensus       410 i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  489 (670)
                      +..++.-|.+.+...+..++..|..+...+......++..+++..|+......+..++..++.++.++..+.+.....+-
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            34456666678888899999999986556677888899999999999999999999999999999999985444333233


Q ss_pred             hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh--------c--CChHHHHHHhh---cCChhHHHHHH
Q 037562          490 NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID--------S--GLIGPIVNLLQ---NTEFDTKKEAA  556 (670)
Q Consensus       490 ~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~  556 (670)
                      ...++..+..++.+. +..|.+.|...|-.++..++.....+.+        .  ..+..++.+|.   +.|.+++.+|.
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            556889999999977 8999999999999998765544333322        1  24889999997   67899999999


Q ss_pred             HHHHHhcCCCC-HH----HHHHHHHcCCcHHHHhhccCC--ChHHHHH
Q 037562          557 WAISNATKFGT-HE----QIKHLVREGCVKPLCDLLLCA--DPKIVTV  597 (670)
Q Consensus       557 ~aL~~l~~~~~-~~----~~~~l~~~~~i~~L~~ll~~~--~~~v~~~  597 (670)
                      ..|..+..... .+    ....+-+.|.-..+.+.++..  +++++.+
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            98888776543 33    222333455445566666554  6666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.07  E-value=2.9e-07  Score=84.07  Aligned_cols=146  Identities=16%  Similarity=0.162  Sum_probs=100.3

Q ss_pred             cccEEEeccC-cCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNC-YRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c-~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .|..+.+.+. +.++.++.. ...+++|+.|+++++. +..++ ....+++|+.|++++| .++.+  +.....+++|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l--~~~~~~~~~L~~   97 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKI--ENLDAVADTLEE   97 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSC--SSHHHHHHHCSE
T ss_pred             chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-Ccccc--cchhhcCCcCCE
Confidence            6777777654 457776653 4678999999998874 66665 6677899999999988 45554  244567799999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-------
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-------  174 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-------  174 (670)
                      |+++++. +..++         ....+++|+.|.+.++. ++.++.......+++|+.|++.+++--...|..       
T Consensus        98 L~L~~N~-l~~l~---------~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~  166 (198)
T 1ds9_A           98 LWISYNQ-IASLS---------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR  166 (198)
T ss_dssp             EEEEEEE-CCCHH---------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred             EECcCCc-CCcCC---------ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence            9999883 44432         23458899999998763 444332112456899999999988632233321       


Q ss_pred             ---CcCCCCcccee
Q 037562          175 ---ELSTPNLHKVQ  185 (670)
Q Consensus       175 ---~~~~~~L~~l~  185 (670)
                         ...+|+|+.|+
T Consensus       167 ~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          167 IEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHCSSCSEEC
T ss_pred             HHHHHhCCCcEEEC
Confidence               34578888875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.07  E-value=1.8e-05  Score=85.07  Aligned_cols=156  Identities=12%  Similarity=0.046  Sum_probs=88.1

Q ss_pred             cccEEEeccCcCcc-cccccccc---cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccc
Q 037562           23 EVKISEAYNCYRLE-NILIEESS---VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVR   98 (670)
Q Consensus        23 ~L~~L~i~~c~~l~-~~~~~~~~---~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~   98 (670)
                      +|+.|.+.+...-. .++.....   ...+|++|++.++.- ...+. ...+++|++|+++++. ++... +..+..+++
T Consensus       303 ~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~  378 (562)
T 3a79_B          303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF-IHMVC-PPSPSSFTFLNFTQNV-FTDSV-FQGCSTLKR  378 (562)
T ss_dssp             SCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC-CCCCC-CSSCCCCCEEECCSSC-CCTTT-TTTCCSCSS
T ss_pred             cchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc-ccccC-ccCCCCceEEECCCCc-cccch-hhhhcccCC
Confidence            56666665543221 22311111   236799999999863 22221 1568899999999984 33321 345678999


Q ss_pred             cceeccccccccceeccccccccccccccccccccccccccccccccccC--------------------CcccCC-CCc
Q 037562           99 LRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG--------------------NCAFTF-PSL  157 (670)
Q Consensus        99 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------------------~~~~~~-~~L  157 (670)
                      |++|+++++. ++.+...     +.....+++|+.|+++++.--..++.+                    ..+..+ ++|
T Consensus       379 L~~L~L~~N~-l~~~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L  452 (562)
T 3a79_B          379 LQTLILQRNG-LKNFFKV-----ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV  452 (562)
T ss_dssp             CCEEECCSSC-CCBTTHH-----HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTC
T ss_pred             CCEEECCCCC-cCCcccc-----hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcC
Confidence            9999998873 3332100     001122344444444433211101110                    011223 578


Q ss_pred             cEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562          158 EILVVNYCPNMKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       158 ~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      +.|++++| +++.+|.+...+++|+.|++++.
T Consensus       453 ~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          453 KVLDLHNN-RIMSIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             SEEECCSS-CCCCCCTTTTSSCCCSEEECCSS
T ss_pred             CEEECCCC-cCcccChhhcCCCCCCEEECCCC
Confidence            88888887 67788877777888888887653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.06  E-value=2e-06  Score=87.80  Aligned_cols=84  Identities=10%  Similarity=-0.031  Sum_probs=38.2

Q ss_pred             cccEEEeccCcCcccccc----cccccCCCCcEEEEecC--CCCccc-cCC-------Cccccccceeeecccccccccc
Q 037562           23 EVKISEAYNCYRLENILI----EESSVMNNLVILCVHCC--DHLINL-VPS-------STSFQNLTNLVVSHCKRLKIVL   88 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~----~~~~~~~~L~~L~i~~c--~~l~~~-~~~-------~~~~~~L~~L~i~~c~~l~~l~   88 (670)
                      +|++|++++|. +.....    .....+++|++|++++|  ..+... |..       ...+++|++|++++|. +....
T Consensus        33 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~  110 (386)
T 2ca6_A           33 SVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTA  110 (386)
T ss_dssp             CCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTT
T ss_pred             CccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHH
Confidence            66667666662 332211    01234566666666665  222211 111       1234566666666553 22100


Q ss_pred             ---cchhhhcccccceecccccc
Q 037562           89 ---TSSIAKTLVRLRYMEIESCD  108 (670)
Q Consensus        89 ---~~~~~~~l~~L~~L~i~~c~  108 (670)
                         .+..+..+++|++|++++|.
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCC
Confidence               01233455666666665553

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.06  E-value=6.1e-05  Score=71.65  Aligned_cols=195  Identities=13%  Similarity=0.135  Sum_probs=143.4

Q ss_pred             HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHH-
Q 037562          454 RLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI-  532 (670)
Q Consensus       454 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-  532 (670)
                      .++..|.+++.+.+..++.-|..+...+...+..++..+++..|+.+.... +...+..+..++.++... .....-++ 
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs  199 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence            344555566777888899999986656778888999999999999999998 999999999999999664 33343444 


Q ss_pred             hcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH-------c---CCcHHHHhhcc---CCChHHHHHHH
Q 037562          533 DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR-------E---GCVKPLCDLLL---CADPKIVTVCL  599 (670)
Q Consensus       533 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-------~---~~i~~L~~ll~---~~~~~v~~~a~  599 (670)
                      ...+|..+..++.+.+..|.+.|...|..++... +.....+.+       .   .-++.|+.+++   +.|.+++..++
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s-e~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS-ENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC-cccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            4557888888888888999999999999998763 222222221       1   13778888886   78999999999


Q ss_pred             HHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHH
Q 037562          600 EGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD--DNGISEKAVEILET  659 (670)
Q Consensus       600 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~~l~~  659 (670)
                      ..+..++...+...       ....+...+++.|.-..+...+...  ++++++. ..+.+.
T Consensus       279 tLIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q-l~iyE~  332 (339)
T 3dad_A          279 TLINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ-LVLYEN  332 (339)
T ss_dssp             HHHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH-HHHHHH
T ss_pred             HHHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH-HHHHHH
Confidence            99999988754322       1224677888888777788766554  6776654 334433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.06  E-value=9.4e-06  Score=72.32  Aligned_cols=133  Identities=13%  Similarity=0.072  Sum_probs=95.7

Q ss_pred             ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccc
Q 037562           44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQD  123 (670)
Q Consensus        44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~  123 (670)
                      ..+++|+.|++++| .+..++.....+++|+.|+++++ .++.+   +.+..+++|++|+++++. +..++.       .
T Consensus        16 ~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~-------~   82 (176)
T 1a9n_A           16 TNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIGE-------G   82 (176)
T ss_dssp             ECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEECS-------C
T ss_pred             CCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccCc-------c
Confidence            35778999999998 46666433233459999999998 45555   466789999999999885 544431       1


Q ss_pred             ccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC----CcCCCCccceeeeeccC
Q 037562          124 EVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG----ELSTPNLHKVQLSRWDG  191 (670)
Q Consensus       124 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~----~~~~~~L~~l~i~~~~~  191 (670)
                      ....+|+|+.|.++++. ++.++.-.....+|+|+.|++.+++ +..+|..    ...+|+|+.|+++++..
T Consensus        83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            12458999999999863 4555431134578999999999986 4566764    55689999998876654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.05  E-value=3e-05  Score=71.82  Aligned_cols=147  Identities=12%  Similarity=0.100  Sum_probs=100.7

Q ss_pred             cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC--Cccccccceeeecccccccccccchhhhccccccee
Q 037562           25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +.+++++. +++.+|..   ..+.++.|+++++. +..+++.  +..+++|+.|+++++. ++.+. +..+..+++|++|
T Consensus        14 ~~l~~s~n-~l~~iP~~---~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L   86 (220)
T 2v70_A           14 TTVDCSNQ-KLNKIPEH---IPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEI   86 (220)
T ss_dssp             TEEECCSS-CCSSCCSC---CCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEE
T ss_pred             CEeEeCCC-CcccCccC---CCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEE
Confidence            45665554 46666642   34578899998874 6666432  4678999999998874 55542 2356789999999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccc-ccCCcCCCCc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIF-SGGELSTPNL  181 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~-p~~~~~~~~L  181 (670)
                      +++++. ++.++.       .....+++|++|.+++.. ++.+... ....+++|+.|++.++ +++.+ |..+..+++|
T Consensus        87 ~Ls~N~-l~~~~~-------~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  155 (220)
T 2v70_A           87 LLTSNR-LENVQH-------KMFKGLESLKTLMLRSNR-ITCVGND-SFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSL  155 (220)
T ss_dssp             ECCSSC-CCCCCG-------GGGTTCSSCCEEECTTSC-CCCBCTT-SSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTC
T ss_pred             ECCCCc-cCccCH-------hHhcCCcCCCEEECCCCc-CCeECHh-HcCCCccCCEEECCCC-cCCEECHHHhcCCCCC
Confidence            998875 333321       123457889999998764 5554332 3456899999999987 46666 6666678999


Q ss_pred             cceeeeec
Q 037562          182 HKVQLSRW  189 (670)
Q Consensus       182 ~~l~i~~~  189 (670)
                      +.|++++.
T Consensus       156 ~~L~L~~N  163 (220)
T 2v70_A          156 STLNLLAN  163 (220)
T ss_dssp             CEEECCSC
T ss_pred             CEEEecCc
Confidence            99988643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.00  E-value=0.00066  Score=75.46  Aligned_cols=299  Identities=15%  Similarity=0.179  Sum_probs=200.1

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---hhHHHH
Q 037562          286 FVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP---RCRDLV  362 (670)
Q Consensus       286 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~i  362 (670)
                      +++-+...+ ..-+..++..+..+..+.....  .+..+++..+.+.+.+....  +.|+.++..++....   .....+
T Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            344444433 2334556666666654221111  11125677777777764434  899999999984332   222233


Q ss_pred             HhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCChH
Q 037562          363 LSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTND  441 (670)
Q Consensus       363 ~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~  441 (670)
                      +  +.++.++... .+....|+..|..+...+...-+.   .....++|.|+..+.+. ....+..|+.++..++...+.
T Consensus        94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred             H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence            3  4678888887 566678888887777777765322   22377889999988765 588999999999999976555


Q ss_pred             HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC--CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG--DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       442 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                      +....+. .++|.+...+.+..++|...|..++..+|.-  +.+..      ..+|.|++.+.++ +.  .-++...|+.
T Consensus       168 ~~~~~~~-~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~------~~~~~~~~~~~~p-~~--~~~~~~~l~~  237 (986)
T 2iw3_A          168 QVALRMP-ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE------RFIPSLIQCIADP-TE--VPETVHLLGA  237 (986)
T ss_dssp             HHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG------GGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred             HHHHhcc-chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh------hhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence            5443333 6889999999999999999999999998862  22222      4789999999877 32  2333444443


Q ss_pred             hhcC---CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC-CCHHHHHHHHHcCCcHHHHhhcc-CCChHH
Q 037562          520 ITCG---NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF-GTHEQIKHLVREGCVKPLCDLLL-CADPKI  594 (670)
Q Consensus       520 l~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v  594 (670)
                      -+.-   ..... .+    ++|.|.+-|......+++.++-.+.||+.- .+|.....|+. ..+|.+....+ -.+|++
T Consensus       238 ~tfv~~v~~~~l-~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          238 TTFVAEVTPATL-SI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             CCCCSCCCHHHH-HH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred             CeeEeeecchhH-HH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence            3321   11111 11    467777788888899999999999999874 35666666554 36777777664 478999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 037562          595 VTVCLEGLENILKVGVA  611 (670)
Q Consensus       595 ~~~a~~~l~~l~~~~~~  611 (670)
                      |..+.+++..+.+.+..
T Consensus       312 r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          312 REVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            99999999998877654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.98  E-value=3.9e-05  Score=71.04  Aligned_cols=130  Identities=14%  Similarity=0.168  Sum_probs=94.3

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|+.|.+.+. +++.++......+++|+.|+++++. +..+ +..+..+++|++|+++++ +++.+ +...+..+++|++
T Consensus        33 ~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~  108 (220)
T 2v9t_B           33 TITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KITEL-PKSLFEGLFSLQL  108 (220)
T ss_dssp             TCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS-CCCCC-CTTTTTTCTTCCE
T ss_pred             CCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cCCcc-CHhHccCCCCCCE
Confidence            7999999887 5777776555778999999999885 5565 455677899999999987 45554 2334578999999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      |+++++. ++.+.       ......+++|+.|.+.+.. ++.+..+ ....+++|+.|++.+.|
T Consensus       109 L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          109 LLLNANK-INCLR-------VDAFQDLHNLNLLSLYDNK-LQTIAKG-TFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             EECCSSC-CCCCC-------TTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             EECCCCC-CCEeC-------HHHcCCCCCCCEEECCCCc-CCEECHH-HHhCCCCCCEEEeCCCC
Confidence            9999874 43332       1233457899999998753 5555442 24467899999988754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.95  E-value=3.5e-05  Score=80.12  Aligned_cols=72  Identities=17%  Similarity=0.104  Sum_probs=43.8

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|++|+++++ +++.++.    .+++|++|+++++ .+..++ ....+++|+.|++++|. ++.+   +.  ..++|++|
T Consensus       154 ~L~~L~l~~N-~l~~lp~----~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~-l~~l---~~--~~~~L~~L  220 (454)
T 1jl5_A          154 FLKIIDVDNN-SLKKLPD----LPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNS-LKKL---PD--LPLSLESI  220 (454)
T ss_dssp             TCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSSC---CC--CCTTCCEE
T ss_pred             CCCEEECCCC-cCcccCC----CcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCc-CCcC---CC--CcCcccEE
Confidence            5666666655 3444332    3458888888887 455554 46677888888887773 3332   11  12467777


Q ss_pred             ccccc
Q 037562          103 EIESC  107 (670)
Q Consensus       103 ~i~~c  107 (670)
                      ++++|
T Consensus       221 ~l~~n  225 (454)
T 1jl5_A          221 VAGNN  225 (454)
T ss_dssp             ECCSS
T ss_pred             ECcCC
Confidence            77666

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.93  E-value=0.002  Score=74.13  Aligned_cols=329  Identities=10%  Similarity=-0.013  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHHHhcC-CCCCcHHHHHHcCCHHHHHHhhc----------------CCCCHHHHHHHHHHHHHHcCCChh
Q 037562          253 SLQLEATTLFINLLSF-DRSPPIDEVIQSGVVPRFVEFLM----------------RQDYPQLQFKAAWALTNIASGTSE  315 (670)
Q Consensus       253 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~g~l~~L~~ll~----------------~~~~~~v~~~a~~~L~~l~~~~~~  315 (670)
                      +++..++.++...... . .+..   .....++.+.. +.                +++ ++++..|+.++..+....+.
T Consensus       204 ~~~~~al~~l~~~~~~~~-ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~  277 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIG-YTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC  277 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred             hHHHHHHHHHHHHHhhCC-cCcc---ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence            6788888888776551 1 1111   23345665665 41                134 78999999999999873221


Q ss_pred             -hHHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhCCCchh-H-----------HHHHhcCChHHHH
Q 037562          316 -NTKVVIDHGAVPIFVKL-------LASPS---VDVRKQTVWALGNVAGDSPRC-R-----------DLVLSQGALIPLL  372 (670)
Q Consensus       316 -~~~~i~~~~~i~~L~~l-------L~~~~---~~v~~~a~~~L~~l~~~~~~~-~-----------~~i~~~~~i~~Ll  372 (670)
                       .....+. .+++.++.+       +...+   ++.....+..+..++...+.. .           ..+.  ..++.++
T Consensus       278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll  354 (971)
T 2x1g_F          278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEIL  354 (971)
T ss_dssp             GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHH
T ss_pred             cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHH
Confidence             1111111 123333331       23334   266666677776665322111 0           1111  1234444


Q ss_pred             HHhcc----cCChhHHHHHHHHHHhhhcCC--------CCCChhh----hhhhHHHHHHhhccCC---------------
Q 037562          373 AELNE----NANLSMLRTATWTLFNFCRGK--------PQPPFNQ----VRPALPVLAQLIRSND---------------  421 (670)
Q Consensus       373 ~~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~~~----~~~~i~~L~~lL~~~~---------------  421 (670)
                      .....    ..+.++...+++++..++...        .......    ...+++.++..+..++               
T Consensus       355 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f  434 (971)
T 2x1g_F          355 HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF  434 (971)
T ss_dssp             HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred             HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence            44322    246788889998888876511        0111111    2334444444443221               


Q ss_pred             hhHHHHHHHHHHHhccCCh-HHHHHHHHcCCHHHHHHhcCC-----CCccchhHHHHHHHHhhcCCchhhHHHHhCCChH
Q 037562          422 EEVLTDACWALSYLSDGTN-DKVQAVIEAGVYPRLVELLGH-----SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALP  495 (670)
Q Consensus       422 ~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~  495 (670)
                      ...|..+..++..++.... .....+     ++.+...+.+     .++..++.|+.+++.++.+......     ..++
T Consensus       435 ~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~  504 (971)
T 2x1g_F          435 RCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIP  504 (971)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHH
Confidence            1355666666666664433 222212     2233333332     6788999999999999876543221     2233


Q ss_pred             HHHHhh---c--cCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH
Q 037562          496 YFLDML---V--HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ  570 (670)
Q Consensus       496 ~L~~~l---~--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  570 (670)
                      .++.++   .  +. ++.+|..++|+++.++..-....+.+.  .+++.++..+ +  +.|+..|++++.+++.......
T Consensus       505 ~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l  578 (971)
T 2x1g_F          505 RLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQL  578 (971)
T ss_dssp             HHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhc
Confidence            333332   3  23 789999999999998752111111111  2456666666 3  7899999999999997643333


Q ss_pred             HHHHHHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHh
Q 037562          571 IKHLVREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       571 ~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~  608 (670)
                      ..++  ..++..+..++..  -+.+.+..+..++..++..
T Consensus       579 ~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          579 KPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            2222  2356666777766  3578888999999998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.92  E-value=3.6e-05  Score=77.51  Aligned_cols=136  Identities=17%  Similarity=0.156  Sum_probs=65.5

Q ss_pred             cccEEEeccCcCcccccccccc-cCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccc
Q 037562           23 EVKISEAYNCYRLENILIEESS-VMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~-~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      .++.|++++. +++.++..... .+++|+.|+++++. +..+++ .+..+++|++|+++++. ++.+ ++..+..+++|+
T Consensus        40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~  115 (361)
T 2xot_A           40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTL-DEFLFSDLQALE  115 (361)
T ss_dssp             TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEE-CTTTTTTCTTCC
T ss_pred             CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcC-CHHHhCCCcCCC
Confidence            4556666554 35554443223 55666666665552 444443 24455666666666652 4443 122344566666


Q ss_pred             eeccccccccceeccccccccccccccccccccccccccccccccccCCc--ccCCCCccEEeEecCCCccccc
Q 037562          101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNC--AFTFPSLEILVVNYCPNMKIFS  172 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~~~L~~L~i~~C~~l~~~p  172 (670)
                      +|+++++. +..+.       ......+++|+.|.+.+. +++.++....  ...+++|+.|+++++ +++.+|
T Consensus       116 ~L~L~~N~-i~~~~-------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~  179 (361)
T 2xot_A          116 VLLLYNNH-IVVVD-------RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP  179 (361)
T ss_dssp             EEECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred             EEECCCCc-ccEEC-------HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence            66666553 22221       112234556666666553 3444333210  023566666666654 344444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.90  E-value=2e-05  Score=79.41  Aligned_cols=147  Identities=19%  Similarity=0.196  Sum_probs=103.5

Q ss_pred             cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCc--cccccceeeecccccccccccchhhhccccccee
Q 037562           25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSST--SFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~--~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +.+...+. +|+.+|..   ..+.++.|+++++ .+..+++...  .+++|+.|+++++ +++.+. +..+..+++|++|
T Consensus        21 ~~l~c~~~-~l~~iP~~---~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L   93 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQS---LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYL   93 (361)
T ss_dssp             TEEECCSS-CCSSCCSS---CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEE
T ss_pred             CEEEeCCC-CcCccCcc---CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccC-hhhccCCCCCCEE
Confidence            45554433 57777753   3567999999987 4777766543  7899999999987 555552 2346789999999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCC----cCC
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE----LST  178 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~----~~~  178 (670)
                      +++++. ++.+..       .....+++|+.|.+.+.. ++.+..+ ....+++|+.|++.++ ++..+|...    ..+
T Consensus        94 ~Ls~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l  162 (361)
T 2xot_A           94 DLSSNH-LHTLDE-------FLFSDLQALEVLLLYNNH-IVVVDRN-AFEDMAQLQKLYLSQN-QISRFPVELIKDGNKL  162 (361)
T ss_dssp             ECCSSC-CCEECT-------TTTTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSS-CCCSCCGGGTC----C
T ss_pred             ECCCCc-CCcCCH-------HHhCCCcCCCEEECCCCc-ccEECHH-HhCCcccCCEEECCCC-cCCeeCHHHhcCcccC
Confidence            999875 555532       123457899999998864 4454332 3456899999999987 577788765    357


Q ss_pred             CCccceeeeec
Q 037562          179 PNLHKVQLSRW  189 (670)
Q Consensus       179 ~~L~~l~i~~~  189 (670)
                      ++|+.|++++.
T Consensus       163 ~~L~~L~L~~N  173 (361)
T 2xot_A          163 PKLMLLDLSSN  173 (361)
T ss_dssp             TTCCEEECCSS
T ss_pred             CcCCEEECCCC
Confidence            89999988653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.88  E-value=0.0031  Score=71.83  Aligned_cols=339  Identities=11%  Similarity=0.093  Sum_probs=184.4

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCC---h--hhHHHHHh
Q 037562          249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFV-EFLMRQDYPQLQFKAAWALTNIASGT---S--ENTKVVID  322 (670)
Q Consensus       249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~-~ll~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~i~~  322 (670)
                      ..++++...++.++....+-   -....+++.+.++.+. .++.+   ++++..|+.+|..+....   +  ...+.+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            45678888899999888664   3356778888999999 88853   789999999999998622   2  12211110


Q ss_pred             --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHHHhcccC
Q 037562          323 --HGAVPIF--------------VKLLASPSVDVRKQTVWALGNVAG-------DSPRCRDLVLSQGALIPLLAELNENA  379 (670)
Q Consensus       323 --~~~i~~L--------------~~lL~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~~~~i~~Ll~~l~~~~  379 (670)
                        .+.++.+              ...-...+.+....-+..+..+..       ..+..+..+.  .++..++..- ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              111122345555555555544431       1122222221  0123344432 455


Q ss_pred             ChhHHHHHHHHHHhhhcCC--CCCChhhhhhhH----HHHHHhhccCC--------------------hh-HH----HHH
Q 037562          380 NLSMLRTATWTLFNFCRGK--PQPPFNQVRPAL----PVLAQLIRSND--------------------EE-VL----TDA  428 (670)
Q Consensus       380 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~i----~~L~~lL~~~~--------------------~~-v~----~~a  428 (670)
                      +.++...++.....++..-  .........+++    +.++.-+..+.                    ++ ..    +.+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            7777777766655555421  111222333333    44443333221                    00 11    122


Q ss_pred             HHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc---
Q 037562          429 CWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH---  503 (670)
Q Consensus       429 l~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~---  503 (670)
                      +..+.++..  ++..+     -+++.+...+..  .++..++.++++++.++.+.......-.-..+++.|+.++.+   
T Consensus       437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~  509 (1023)
T 4hat_C          437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG  509 (1023)
T ss_dssp             HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence            223333221  11111     122334444443  578899999999999997654432222223467788888764   


Q ss_pred             --CCchhHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH------
Q 037562          504 --NHEESIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK------  572 (670)
Q Consensus       504 --~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~------  572 (670)
                        . ...++..++|+++..+.   ..++...     .++..|+..+.++++.++..|++++.+++..+......      
T Consensus       510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~  583 (1023)
T 4hat_C          510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES  583 (1023)
T ss_dssp             HHH-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred             Ccc-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence              2 44567788899998865   2333222     24555666666677899999999999999853322110      


Q ss_pred             -HHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562          573 -HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       573 -~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                       ..++ .++..+......-++.-+..+.+++..++...+
T Consensus       584 ~p~~~-~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          584 EPFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             SCHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             chhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence             0000 122333333444566666788888888776543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.84  E-value=0.0026  Score=73.23  Aligned_cols=343  Identities=11%  Similarity=0.081  Sum_probs=185.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 037562          291 MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL---ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGA  367 (670)
Q Consensus       291 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  367 (670)
                      .+.+ ...++.++++++.++.+.....     ...++.++..+   .++++.++..++++++.++..-....+.+  ..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHH
Confidence            4455 6889999999999998543211     12334444433   33678899999999999974211111221  246


Q ss_pred             hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 037562          368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTN-DKVQ  444 (670)
Q Consensus       368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~-~~~~  444 (670)
                      ++.++..+ .+  +.++..|++++.+++......-......+++.+..++...  +...+..+..+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            77888887 33  7899999999999997543222233456667777777753  57888889999999876543 3333


Q ss_pred             HHHHcCCHHHHHHhc----CCC-Cccchh---HHHHHHHHhhcCCch---------------------hhHHHHhCCChH
Q 037562          445 AVIEAGVYPRLVELL----GHS-SSSVLT---PALRTIRNIVKGDDF---------------------QTQCIINCGALP  495 (670)
Q Consensus       445 ~~~~~~~i~~L~~lL----~~~-~~~v~~---~a~~~L~~l~~~~~~---------------------~~~~l~~~~~~~  495 (670)
                      ..++ .+++.+...+    +.. +++.+.   .++.+|+.+...-..                     ..-.-+...+++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            3333 3444444333    222 333333   344555555432110                     000011223455


Q ss_pred             HHHHhhcc-CCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHH----hhc-CChhHHHHHHHHHHHhcCCC-CH
Q 037562          496 YFLDMLVH-NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNL----LQN-TEFDTKKEAAWAISNATKFG-TH  568 (670)
Q Consensus       496 ~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l----l~~-~~~~v~~~a~~aL~~l~~~~-~~  568 (670)
                      .+..++.. ..++.+.+.++.++..++....+..     ...++.++..    ... +.+.+..-+...+..+.... ..
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~  761 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHF  761 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTC
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchH
Confidence            55555542 1267888999999988754211110     1123433333    222 22222222222222222210 01


Q ss_pred             HHHHHHHHcCCcHHHHhhcc---CCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC
Q 037562          569 EQIKHLVREGCVKPLCDLLL---CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD  645 (670)
Q Consensus       569 ~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~  645 (670)
                      +....+.+ ..+..+..++.   ..+++++......+..++......--.+     ...+...      ++.+.....+.
T Consensus       762 ~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~-----~~~~~~i------~~~~~~~l~~~  829 (963)
T 2x19_B          762 PPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCE-----RLDVKAV------FQCAVLALKFP  829 (963)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCT-----TSCHHHH------HHHHHHHTTCS
T ss_pred             HHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCC-----cccHHHH------HHHHHHHcCCC
Confidence            11211111 12333333332   2469999999999999998765433110     0002222      33433445688


Q ss_pred             CHHHHHHHHHHHHHhcC
Q 037562          646 DNGISEKAVEILETYWS  662 (670)
Q Consensus       646 ~~~v~~~a~~~l~~~~~  662 (670)
                      +.++...+.+.+..++.
T Consensus       830 ~~~~~~~~l~~l~~l~~  846 (963)
T 2x19_B          830 EAPTVKASCGFFTELLP  846 (963)
T ss_dssp             CHHHHHHHHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            89999999998888764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.83  E-value=0.0017  Score=74.77  Aligned_cols=390  Identities=8%  Similarity=0.015  Sum_probs=212.2

Q ss_pred             hccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCC---CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 037562          237 LEILPAMVDGVW-SDDNSLQLEATTLFINLLSFD---RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG  312 (670)
Q Consensus       237 ~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  312 (670)
                      .+....+...+. +.++.++..|+..|.+.....   =++..+..+...+++.+.+.- ... +.++...+.++..++..
T Consensus        38 p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~-~~vr~kl~~~la~i~~~  115 (971)
T 2x1g_F           38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFA-GGP-KIVLNRLCISLGAYIVH  115 (971)
T ss_dssp             THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHT-TSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHHHH
Confidence            455666777775 567899999999999887542   022234444555666665543 334 79999999999999874


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCC------CHHHHHHHHHHHHHhhCC----Cc-hh----HHHHHhcCChHHHHHHh--
Q 037562          313 TSENTKVVIDHGAVPIFVKLLASP------SVDVRKQTVWALGNVAGD----SP-RC----RDLVLSQGALIPLLAEL--  375 (670)
Q Consensus       313 ~~~~~~~i~~~~~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~----~~-~~----~~~i~~~~~i~~Ll~~l--  375 (670)
                      ...     .-.+.++.++..++++      ++...+.++.+|..++.+    .+ .-    ++.+..  .++.++.++  
T Consensus       116 ~~p-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~--~~~~vl~ll~~  188 (971)
T 2x1g_F          116 MLG-----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAK--RVQLVIHTVER  188 (971)
T ss_dssp             TTC-----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHT--THHHHHHHHHH
T ss_pred             ccc-----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            321     1235778888888764      567788888888887732    11 11    122211  244444333  


Q ss_pred             --cccCCh-------hHHHHHHHHHHhhhc--CCCCCChhhhhhhHHHHHHhhc----------------cCChhHHHHH
Q 037562          376 --NENANL-------SMLRTATWTLFNFCR--GKPQPPFNQVRPALPVLAQLIR----------------SNDEEVLTDA  428 (670)
Q Consensus       376 --~~~~~~-------~~~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~lL~----------------~~~~~v~~~a  428 (670)
                        ....++       .++..++.++.....  .-+..   .....++.+.. +.                .++++++..|
T Consensus       189 ~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a  264 (971)
T 2x1g_F          189 YLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC  264 (971)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred             HHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence              222222       677788888876555  22222   44667777766 41                1457899999


Q ss_pred             HHHHHHhccCCh-----HHHHHHHHcCCHHH---HHHhcCCCCc---cchhHHHHHHHHhhcCCchhhH-----------
Q 037562          429 CWALSYLSDGTN-----DKVQAVIEAGVYPR---LVELLGHSSS---SVLTPALRTIRNIVKGDDFQTQ-----------  486 (670)
Q Consensus       429 l~~L~~l~~~~~-----~~~~~~~~~~~i~~---L~~lL~~~~~---~v~~~a~~~L~~l~~~~~~~~~-----------  486 (670)
                      +.++..+....+     .....++. +.+..   +...+..++.   ......++.+..++........           
T Consensus       265 ~~~l~~i~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (971)
T 2x1g_F          265 LKTMVNIIIQPDCHNYPKTAFVLIK-MFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELS  343 (971)
T ss_dssp             HHHHHHHHHCSGGGGCHHHHHHHHH-HHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHcCccccccHHHHHHHHH-HHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence            999999886433     11111221 11111   1112244443   6666777777777643222111           


Q ss_pred             HHHhCCChHHHHHhhcc----CCchhHHHHHHHHHHHhhcC--------C-HHHH---HHHHhcCChHHHHHHhhcCCh-
Q 037562          487 CIINCGALPYFLDMLVH----NHEESIKKEVSWIISNITCG--------N-REQI---QAVIDSGLIGPIVNLLQNTEF-  549 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~----~~~~~v~~~a~~~L~~l~~~--------~-~~~~---~~l~~~~~i~~L~~ll~~~~~-  549 (670)
                      ..+ ..+++.++.+...    ..++++...+++....++..        . +...   ..+.. .+++.++..+..++. 
T Consensus       344 ~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~p~~~  421 (971)
T 2x1g_F          344 ILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA-HLTRILVRKSEQPDEK  421 (971)
T ss_dssp             HHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH-HHHHHHHHHTSCCCTT
T ss_pred             HHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HHHHHHHHHhcCCCcc
Confidence            001 1345555555533    22678888999888777541        0 1111   11111 345555555432111 


Q ss_pred             --------------hHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC-----CChHHHHHHHHHHHHHHHhhh
Q 037562          550 --------------DTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC-----ADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       550 --------------~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~  610 (670)
                                    ..|..+..++..++..........+     .+.+...+..     .+...++.++.+++.+.+...
T Consensus       422 ~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~  496 (971)
T 2x1g_F          422 SLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFG  496 (971)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcC
Confidence                          3566777777777665332333332     2233333322     567789999999988765433


Q ss_pred             hhhccCCCCCCccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q 037562          611 AEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS-HDDNGISEKAVEILETYW  661 (670)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~~l~~~~  661 (670)
                      ...         ......     .++.+..+.. +.++.|+..+.+++.+|-
T Consensus       497 ~~~---------~~~l~~-----l~~~l~~l~~~d~~~~vr~~a~~~l~~~~  534 (971)
T 2x1g_F          497 GEE---------KRQIPR-----LMRVLAEIPYEKLNVKLLGTALETMGSYC  534 (971)
T ss_dssp             -------------CHHHH-----HHHHHHHSCTTTSCHHHHHHHHHHHHHTH
T ss_pred             hhh---------hHHHHH-----HHHHHHhcCccccCHHHHHHHHHHHHHHH
Confidence            211         011111     1334444442 358899999999999874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.83  E-value=1e-06  Score=92.47  Aligned_cols=83  Identities=11%  Similarity=0.114  Sum_probs=45.4

Q ss_pred             cccEEEeccCcCccccc----ccccccCCCCcEEEEecCCCCccc-----cC-CCccccccceeeecccccccccc---c
Q 037562           23 EVKISEAYNCYRLENIL----IEESSVMNNLVILCVHCCDHLINL-----VP-SSTSFQNLTNLVVSHCKRLKIVL---T   89 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~----~~~~~~~~~L~~L~i~~c~~l~~~-----~~-~~~~~~~L~~L~i~~c~~l~~l~---~   89 (670)
                      +|++|++++|. ++...    ......+++|++|++++|. +...     .+ ....+++|++|++++| .++...   .
T Consensus       200 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l  276 (461)
T 1z7x_W          200 QLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDL  276 (461)
T ss_dssp             CCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred             CceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHH
Confidence            78888888773 44321    1112456777777777773 3321     11 1123567777777777 444310   0


Q ss_pred             chhhhcccccceecccccc
Q 037562           90 SSIAKTLVRLRYMEIESCD  108 (670)
Q Consensus        90 ~~~~~~l~~L~~L~i~~c~  108 (670)
                      +..+..+++|++|+++++.
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCC
T ss_pred             HHHHhhCCCcceEECCCCC
Confidence            1234456777777776653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.83  E-value=4.9e-05  Score=80.75  Aligned_cols=131  Identities=17%  Similarity=0.132  Sum_probs=92.3

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|++.++ +++.++..   .+++|+.|+++++. +..+|   ..+++|+.|+++++ +++.+.  . +..  +|++|
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~---l~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip--~-l~~--~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDN---LPPQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLP--E-LPA--SLKHL  125 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSC---CCTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCC--C-CCT--TCCEE
T ss_pred             CccEEEeCCC-CCCccCHh---HcCCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcc--h-hhc--CCCEE
Confidence            7899999887 47776653   35899999999884 66776   45799999999998 566542  2 222  99999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH  182 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~  182 (670)
                      +++++. +..++.           .+++|+.|.++++. ++.++.     .+++|+.|++.+|. +..+|. +.  ++|+
T Consensus       126 ~Ls~N~-l~~lp~-----------~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~  183 (571)
T 3cvr_A          126 DVDNNQ-LTMLPE-----------LPALLEYINADNNQ-LTMLPE-----LPTSLEVLSVRNNQ-LTFLPE-LP--ESLE  183 (571)
T ss_dssp             ECCSSC-CSCCCC-----------CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSCCCC-CC--TTCC
T ss_pred             ECCCCc-CCCCCC-----------cCccccEEeCCCCc-cCcCCC-----cCCCcCEEECCCCC-CCCcch-hh--CCCC
Confidence            998874 444321           46788888887753 444432     45778888888774 666776 32  7788


Q ss_pred             ceeeeec
Q 037562          183 KVQLSRW  189 (670)
Q Consensus       183 ~l~i~~~  189 (670)
                      .|++++.
T Consensus       184 ~L~Ls~N  190 (571)
T 3cvr_A          184 ALDVSTN  190 (571)
T ss_dssp             EEECCSS
T ss_pred             EEECcCC
Confidence            8877654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.82  E-value=2.5e-06  Score=87.14  Aligned_cols=83  Identities=10%  Similarity=0.001  Sum_probs=44.5

Q ss_pred             CccccEEEeccCcCccc-----ccccccccCCCCcEEEEecCCCCccc-----cCCCccc---------cccceeeeccc
Q 037562           21 GMEVKISEAYNCYRLEN-----ILIEESSVMNNLVILCVHCCDHLINL-----VPSSTSF---------QNLTNLVVSHC   81 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~-----~~~~~~~~~~~L~~L~i~~c~~l~~~-----~~~~~~~---------~~L~~L~i~~c   81 (670)
                      ..+|++|+++++. +..     ++. ....+++|++|++++|. +...     +.....+         ++|++|++++|
T Consensus        93 ~~~L~~L~Ls~n~-l~~~~~~~l~~-~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           93 CPKLHTVRLSDNA-FGPTAQEPLID-FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             CTTCCEEECCSCC-CCTTTHHHHHH-HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             CCcccEEECCCCc-CCHHHHHHHHH-HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            4478888887764 333     222 23557788888887775 2211     1111112         67777777776


Q ss_pred             ccccccccc---hhhhcccccceeccccc
Q 037562           82 KRLKIVLTS---SIAKTLVRLRYMEIESC  107 (670)
Q Consensus        82 ~~l~~l~~~---~~~~~l~~L~~L~i~~c  107 (670)
                      . +.....+   ..+..+++|++|++++|
T Consensus       170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          170 R-LENGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             C-CTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             C-CCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence            3 2211111   12345667777777666

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.82  E-value=0.015  Score=67.38  Aligned_cols=358  Identities=9%  Similarity=0.097  Sum_probs=191.6

Q ss_pred             hhccHHHHHHHhcCCChHHHHHHHHHHHHHhcC---CCCC---c-H-----HHHHH--cCCHHHHHHhhcCCCCHHHHHH
Q 037562          236 KLEILPAMVDGVWSDDNSLQLEATTLFINLLSF---DRSP---P-I-----DEVIQ--SGVVPRFVEFLMRQDYPQLQFK  301 (670)
Q Consensus       236 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~---~~~~---~-~-----~~~~~--~g~l~~L~~ll~~~~~~~v~~~  301 (670)
                      ..+.++.+++.++ .++.....++..|..+...   .+.+   . .     ..+..  ..+++.+...+.+..++.++..
T Consensus       136 Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~  214 (1049)
T 3m1i_C          136 WPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVA  214 (1049)
T ss_dssp             CTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             chHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4466888888886 4444555556666555421   0011   0 0     11221  1123334455544433789999


Q ss_pred             HHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--ch---hHHHHHhcCChHHHHHHh
Q 037562          302 AAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDS--PR---CRDLVLSQGALIPLLAEL  375 (670)
Q Consensus       302 a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~i~~~~~i~~Ll~~l  375 (670)
                      ++.++.....--+  ...+.+...++.+.+ ++  .+++++..|+.+|..+....  +.   ....+..  .++.++..+
T Consensus       215 aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l  288 (1049)
T 3m1i_C          215 TLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQI  288 (1049)
T ss_dssp             HHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHH
Confidence            9999988765222  233555667777773 44  37899999999999988542  21   1111111  112222211


Q ss_pred             c-----------------ccCChhHHHHHHHHHHhhhcCC------CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 037562          376 N-----------------ENANLSMLRTATWTLFNFCRGK------PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWAL  432 (670)
Q Consensus       376 ~-----------------~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L  432 (670)
                      .                 .+.+.+.....+..+..+....      +.........+++.++.....++.++...++...
T Consensus       289 ~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw  368 (1049)
T 3m1i_C          289 ATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYW  368 (1049)
T ss_dssp             HHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            0                 1223444445555444332210      1111222345677777777777888888888777


Q ss_pred             HHhcc----C--ChHHHHHHHHcCCHHHHHHhcCCCCc----------------------cchhHHHHHHHHhhcCCchh
Q 037562          433 SYLSD----G--TNDKVQAVIEAGVYPRLVELLGHSSS----------------------SVLTPALRTIRNIVKGDDFQ  484 (670)
Q Consensus       433 ~~l~~----~--~~~~~~~~~~~~~i~~L~~lL~~~~~----------------------~v~~~a~~~L~~l~~~~~~~  484 (670)
                      ..++.    .  .......++. .+++.++..+..++.                      ..+..+..+|..++...+..
T Consensus       369 ~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~  447 (1049)
T 3m1i_C          369 HNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID  447 (1049)
T ss_dssp             HHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHH
Confidence            77654    1  1111222222 345556665543210                      11234555666665322221


Q ss_pred             hHHHHhCCChHHHHHhhcc-CCchhHHHHHHHHHHHhhcCCHHH-HHHHHhcCChHHHHHHhhc-----CChhHHHHHHH
Q 037562          485 TQCIINCGALPYFLDMLVH-NHEESIKKEVSWIISNITCGNREQ-IQAVIDSGLIGPIVNLLQN-----TEFDTKKEAAW  557 (670)
Q Consensus       485 ~~~l~~~~~~~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~  557 (670)
                      .-.    -+.+.+-..+.+ ..+...++.|+++++.++.+.... ...+. ..+++.+..+...     +.+.++..+++
T Consensus       448 ~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~  522 (1049)
T 3m1i_C          448 TEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMY  522 (1049)
T ss_dssp             HHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence            111    123444444543 227788999999999997643222 11111 1244444443331     23445556889


Q ss_pred             HHHHhcCC--CCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          558 AISNATKF--GTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       558 aL~~l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      +++.++..  ..++....     +++.+++.++++++.|+..|+.++.++++....
T Consensus       523 ~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          523 VVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             HHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99877642  12222222     577788888888999999999999999986543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.80  E-value=0.00011  Score=67.86  Aligned_cols=130  Identities=15%  Similarity=0.151  Sum_probs=94.1

Q ss_pred             cccEEEeccCcCcccccc-cccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccc
Q 037562           23 EVKISEAYNCYRLENILI-EESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      .++.|.+++. +++.++. .....+++|+.|+++++. +..+++ .+..+++|+.|+++++. ++.+ ++..+..+++|+
T Consensus        33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~  108 (220)
T 2v70_A           33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENV-QHKMFKGLESLK  108 (220)
T ss_dssp             TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCC-CGGGGTTCSSCC
T ss_pred             CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCcc-CHhHhcCCcCCC
Confidence            6789999887 4666642 334679999999998875 667665 56788999999999884 4444 234467899999


Q ss_pred             eeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      +|+++++. +..+.       +.....+++|+.|.+.+. +++.+... ....+++|+.|++.+.|
T Consensus       109 ~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          109 TLMLRSNR-ITCVG-------NDSFIGLSSVRLLSLYDN-QITTVAPG-AFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EEECTTSC-CCCBC-------TTSSTTCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCEEECCSCC
T ss_pred             EEECCCCc-CCeEC-------HhHcCCCccCCEEECCCC-cCCEECHH-HhcCCCCCCEEEecCcC
Confidence            99999875 33332       123345789999999885 56665432 34568999999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.76  E-value=3.5e-05  Score=85.08  Aligned_cols=111  Identities=15%  Similarity=0.017  Sum_probs=78.7

Q ss_pred             cCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccccccccccccccccc
Q 037562           64 VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLI  143 (670)
Q Consensus        64 ~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  143 (670)
                      +..+..+++|+.|+++++. +..+  +..+..+++|++|+++++. +..++.        ....+++|+.|.|+++. |+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~~lp~--------~~~~l~~L~~L~Ls~N~-l~  283 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQ-IFNI--SANIFKYDFLTRLYLNGNS-LTELPA--------EIKNLSNLRVLDLSHNR-LT  283 (727)
T ss_dssp             -----CCCCCCEEECTTSC-CSCC--CGGGGGCCSCSCCBCTTSC-CSCCCG--------GGGGGTTCCEEECTTSC-CS
T ss_pred             hhhhccCCCCcEEECCCCC-CCCC--ChhhcCCCCCCEEEeeCCc-CcccCh--------hhhCCCCCCEEeCcCCc-CC
Confidence            4445667889999998885 3444  2345578899999998874 444431        23468889999998865 66


Q ss_pred             ccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562          144 SFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD  190 (670)
Q Consensus       144 ~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~  190 (670)
                      .++..  ...+++|+.|++.+| ++..+|.++..+++|+.|++++..
T Consensus       284 ~lp~~--~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          284 SLPAE--LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCSS--GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             ccChh--hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence            66543  567889999999988 678899888888999999886544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.75  E-value=5.2e-05  Score=80.91  Aligned_cols=122  Identities=18%  Similarity=0.178  Sum_probs=86.8

Q ss_pred             CCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccc
Q 037562           47 NNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVI  126 (670)
Q Consensus        47 ~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~  126 (670)
                      ..|+.|+++++ .+..+|. ++.+++|+.|+++++ +++.+  |..+..+++|+.|+++++. ++.++         ...
T Consensus       441 ~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~Ls~N~-l~~lp---------~l~  505 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRAL--PPALAALRCLEVLQASDNA-LENVD---------GVA  505 (567)
T ss_dssp             TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCC--CGGGGGCTTCCEEECCSSC-CCCCG---------GGT
T ss_pred             cCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-ccccc--chhhhcCCCCCEEECCCCC-CCCCc---------ccC
Confidence            36889999887 5777765 788899999999987 45554  3467789999999998874 44332         234


Q ss_pred             cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCc----CCCCcccee
Q 037562          127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGEL----STPNLHKVQ  185 (670)
Q Consensus       127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~----~~~~L~~l~  185 (670)
                      .+++|+.|.++++ +++.+........+++|+.|++++++ +..+|....    .+|+|+.|+
T Consensus       506 ~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          506 NLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             TCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            5888999999875 56665311135678999999999875 666665432    268888774

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.74  E-value=5.6e-05  Score=80.66  Aligned_cols=102  Identities=15%  Similarity=0.172  Sum_probs=76.4

Q ss_pred             cccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCc
Q 037562           71 QNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNC  150 (670)
Q Consensus        71 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  150 (670)
                      ..|+.|+++++ +++.+   +.+..+++|+.|+++++. ++.++.        ....+++|+.|.+++. .++.++   .
T Consensus       441 ~~L~~L~Ls~n-~l~~l---p~~~~l~~L~~L~Ls~N~-l~~lp~--------~~~~l~~L~~L~Ls~N-~l~~lp---~  503 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTVL---CHLEQLLLVTHLDLSHNR-LRALPP--------ALAALRCLEVLQASDN-ALENVD---G  503 (567)
T ss_dssp             TTCSEEECTTS-CCSSC---CCGGGGTTCCEEECCSSC-CCCCCG--------GGGGCTTCCEEECCSS-CCCCCG---G
T ss_pred             cCceEEEecCC-CCCCC---cCccccccCcEeecCccc-ccccch--------hhhcCCCCCEEECCCC-CCCCCc---c
Confidence            36899999987 66665   237889999999998874 445432        3346889999999875 455554   2


Q ss_pred             ccCCCCccEEeEecCCCcccc--ccCCcCCCCccceeeeecc
Q 037562          151 AFTFPSLEILVVNYCPNMKIF--SGGELSTPNLHKVQLSRWD  190 (670)
Q Consensus       151 ~~~~~~L~~L~i~~C~~l~~~--p~~~~~~~~L~~l~i~~~~  190 (670)
                      ...+++|+.|+++++ ++..+  |..+..+++|+.|++++.+
T Consensus       504 l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          504 VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            567899999999987 56766  7777788999999886543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.73  E-value=2.5e-05  Score=77.98  Aligned_cols=154  Identities=12%  Similarity=-0.027  Sum_probs=88.4

Q ss_pred             cccEEEeccCcC----cc-----cccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhh
Q 037562           23 EVKISEAYNCYR----LE-----NILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIA   93 (670)
Q Consensus        23 ~L~~L~i~~c~~----l~-----~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~   93 (670)
                      +|+.|.|.+...    +.     .+. .....+|+|+.|.+.+|..+ .+++  ...++|++|++..|. +..-. ...+
T Consensus       140 ~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~--~~~~~L~~L~L~~~~-l~~~~-l~~l  213 (362)
T 2ra8_A          140 HFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK--KPRPNLKSLEIISGG-LPDSV-VEDI  213 (362)
T ss_dssp             TCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS--CBCTTCSEEEEECSB-CCHHH-HHHH
T ss_pred             hhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc--ccCCCCcEEEEecCC-CChHH-HHHH
Confidence            788888864311    10     011 11246789999999888544 3333  237899999998764 32210 0112


Q ss_pred             --hcccccceecccccccc-------ceeccccccccccccccccccccccccccccccccccC-CcccCCCCccEEeEe
Q 037562           94 --KTLVRLRYMEIESCDKI-------TEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG-NCAFTFPSLEILVVN  163 (670)
Q Consensus        94 --~~l~~L~~L~i~~c~~l-------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~i~  163 (670)
                        ..+|+|++|+++.+.+.       +.+-      .......||+|+.|.+.+|.--...... .....+|+|+.|+++
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFR------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTG------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHH------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence              26899999988643221       1110      0011135899999999886533211110 012357899999997


Q ss_pred             cCCCccc-----cccCCcCCCCccceeeeec
Q 037562          164 YCPNMKI-----FSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       164 ~C~~l~~-----~p~~~~~~~~L~~l~i~~~  189 (670)
                      .+ .+..     ++.++..+++|+.|+++.+
T Consensus       288 ~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          288 AG-VLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             SS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence            54 4542     4555556789999988543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.69  E-value=0.00021  Score=63.53  Aligned_cols=59  Identities=15%  Similarity=0.203  Sum_probs=28.5

Q ss_pred             CCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccc
Q 037562           46 MNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC  107 (670)
Q Consensus        46 ~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  107 (670)
                      +++|+.|+++++. +..+++. +..+++|++|+++++ +++.+ ++..+..+++|++|+++++
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCC
Confidence            3566666666543 4444432 244556666666555 33332 1122344555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.66  E-value=3.8e-06  Score=88.05  Aligned_cols=83  Identities=14%  Similarity=0.124  Sum_probs=46.9

Q ss_pred             cccEEEeccCcCccccc----ccccccCCCCcEEEEecCCCCccccC-----C-Cccccccceeeeccccccccccc---
Q 037562           23 EVKISEAYNCYRLENIL----IEESSVMNNLVILCVHCCDHLINLVP-----S-STSFQNLTNLVVSHCKRLKIVLT---   89 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~----~~~~~~~~~L~~L~i~~c~~l~~~~~-----~-~~~~~~L~~L~i~~c~~l~~l~~---   89 (670)
                      +|++|++++|. ++...    ......+++|++|++++|. +.....     . ....++|++|++++| ++.....   
T Consensus        86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l  162 (461)
T 1z7x_W           86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPL  162 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHH
T ss_pred             ceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHH
Confidence            58888888884 44211    2223567788888888775 432111     0 112346788888777 3332110   


Q ss_pred             chhhhcccccceecccccc
Q 037562           90 SSIAKTLVRLRYMEIESCD  108 (670)
Q Consensus        90 ~~~~~~l~~L~~L~i~~c~  108 (670)
                      +..+..+++|++|++++|.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSB
T ss_pred             HHHHhhCCCCCEEECcCCC
Confidence            1234456777777777665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.65  E-value=0.00019  Score=64.82  Aligned_cols=35  Identities=14%  Similarity=0.135  Sum_probs=21.1

Q ss_pred             CCCCccEEeEecCCCcccc-ccCCcCCCCccceeeee
Q 037562          153 TFPSLEILVVNYCPNMKIF-SGGELSTPNLHKVQLSR  188 (670)
Q Consensus       153 ~~~~L~~L~i~~C~~l~~~-p~~~~~~~~L~~l~i~~  188 (670)
                      .+++|+.|+++++. +..+ |..+..+++|+.|++++
T Consensus       100 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A          100 GLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             TCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTT
T ss_pred             CCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCC
Confidence            45667777776653 3433 44555567777777643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.64  E-value=5e-05  Score=83.82  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=87.6

Q ss_pred             cccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccc
Q 037562           43 SSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQ  122 (670)
Q Consensus        43 ~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  122 (670)
                      ...+++|+.|+++++. +..++.....+++|++|+++++ +++.+  +..+..|++|++|+++++. ++.++.       
T Consensus       220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~Ls~N~-l~~lp~-------  287 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTEL--PAEIKNLSNLRVLDLSHNR-LTSLPA-------  287 (727)
T ss_dssp             --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCC--CGGGGGGTTCCEEECTTSC-CSSCCS-------
T ss_pred             hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCccc--ChhhhCCCCCCEEeCcCCc-CCccCh-------
Confidence            4678899999999886 5578877778999999999998 55554  3556889999999999986 545532       


Q ss_pred             cccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc
Q 037562          123 DEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG  173 (670)
Q Consensus       123 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~  173 (670)
                       ....+++|+.|.|.++ .++.++..  ...+++|+.|++.+++--..+|.
T Consensus       288 -~~~~l~~L~~L~L~~N-~l~~lp~~--~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          288 -ELGSCFQLKYFYFFDN-MVTTLPWE--FGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             -SGGGGTTCSEEECCSS-CCCCCCSS--TTSCTTCCCEECTTSCCCSHHHH
T ss_pred             -hhcCCCCCCEEECCCC-CCCccChh--hhcCCCccEEeCCCCccCCCChH
Confidence             3356899999999987 57777663  66789999999999864333443

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.64  E-value=0.015  Score=67.40  Aligned_cols=350  Identities=10%  Similarity=0.085  Sum_probs=182.5

Q ss_pred             HHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHcCCC--hh---
Q 037562          243 MVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVE-FLMRQDYPQLQFKAAWALTNIASGT--SE---  315 (670)
Q Consensus       243 l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~-ll~~~~~~~v~~~a~~~L~~l~~~~--~~---  315 (670)
                      +.+.+. .++.+++..++.++.......  + ...+.+...++.+.+ ++.  + ++++..|+.+|..+....  +.   
T Consensus       199 ~~~~l~~~~~~~~~~~aL~~l~~~l~wi--~-~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~  272 (1049)
T 3m1i_C          199 CFQVLEQGSSSSLIVATLESLLRYLHWI--P-YRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDL  272 (1049)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHTTTS--C-THHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhhC--C-HHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhh
Confidence            334443 355788999999998876642  2 344566677777773 443  4 799999999999988632  21   


Q ss_pred             hHHHHHh--CCChHHHHH-h-------------hCCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHH
Q 037562          316 NTKVVID--HGAVPIFVK-L-------------LASPSVDVRKQTVWALGNVAG-------DSPRCRDLVLSQGALIPLL  372 (670)
Q Consensus       316 ~~~~i~~--~~~i~~L~~-l-------------L~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~~~~i~~Ll  372 (670)
                      ....+..  .+++..+.. +             -.+.+.+.....+..+..+..       ..+..+..+.  ..++.++
T Consensus       273 ~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll  350 (1049)
T 3m1i_C          273 IKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLI  350 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHHHH
Confidence            1111110  112222211 1             112344444444544443321       1111122211  1345555


Q ss_pred             HHhcccCChhHHHHHHHHHHhhhc----CCCCC--ChhhhhhhHHHHHHhhccC-------------------Ch---hH
Q 037562          373 AELNENANLSMLRTATWTLFNFCR----GKPQP--PFNQVRPALPVLAQLIRSN-------------------DE---EV  424 (670)
Q Consensus       373 ~~l~~~~~~~~~~~a~~~L~~l~~----~~~~~--~~~~~~~~i~~L~~lL~~~-------------------~~---~v  424 (670)
                      ... ...+.++...++..+..++.    .....  .......+++.++..+..+                   |.   ..
T Consensus       351 ~~~-~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~  429 (1049)
T 3m1i_C          351 QLS-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1049)
T ss_dssp             HHH-TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred             HHH-cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence            554 45577888888877777776    32111  1122244455555544211                   10   22


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC--CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc
Q 037562          425 LTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG--HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV  502 (670)
Q Consensus       425 ~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~  502 (670)
                      +..+..+|..++.......-.    -+.+.+...+.  ..++..++.|+++++.++.........-.-..+++.+..+..
T Consensus       430 ~~~~~~~L~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~  505 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV  505 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence            334445555555322221111    12344444554  356788999999999998654322111111224444544332


Q ss_pred             c----CCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH-------
Q 037562          503 H----NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQI-------  571 (670)
Q Consensus       503 ~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-------  571 (670)
                      .    .+.+.++..++|+++.++.--......+.  .+++.++..+.++++.|+..|+.++.+++..+.....       
T Consensus       506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~  583 (1049)
T 3m1i_C          506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES  583 (1049)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence            1    11455666789999987641111111121  3566777788888899999999999999985332211       


Q ss_pred             -HHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          572 -KHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       572 -~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                       .++  ..++..+..++..-+.+-.....+++..++...
T Consensus       584 ~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          584 EPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             SCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             CcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence             111  113333444455555555566777777776543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.63  E-value=0.0086  Score=68.22  Aligned_cols=358  Identities=10%  Similarity=0.090  Sum_probs=194.3

Q ss_pred             hccHHHHHHHhcCCChHHHHHHHHHHHHHhcC----CCC--Cc-HH-----HHHH--cCCHHHHHHhhcCCCCHHHHHHH
Q 037562          237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSF----DRS--PP-ID-----EVIQ--SGVVPRFVEFLMRQDYPQLQFKA  302 (670)
Q Consensus       237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~----~~~--~~-~~-----~~~~--~g~l~~L~~ll~~~~~~~v~~~a  302 (670)
                      .+.++.+++.++++ +.....++..|..+...    .+.  .. +.     .+..  ..+++.+..++.+...+++...+
T Consensus       137 p~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~  215 (1023)
T 4hat_C          137 PEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVAT  215 (1023)
T ss_dssp             TTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             hHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45577888877643 34455555666554332    101  11 11     1111  12344444555444337888899


Q ss_pred             HHHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---c--hhHHHHHhc--CChHHH---
Q 037562          303 AWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSVDVRKQTVWALGNVAGDS---P--RCRDLVLSQ--GALIPL---  371 (670)
Q Consensus       303 ~~~L~~l~~~~~~~~~~i~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~i~~~--~~i~~L---  371 (670)
                      +.++.....  --....+++.+.++.+. .++.  ++.++..|+.+|..+....   +  ...+.+...  +.+..+   
T Consensus       216 L~~l~s~l~--WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~  291 (1023)
T 4hat_C          216 LESLLRYLH--WIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATS  291 (1023)
T ss_dssp             HHHHHHHTT--TSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999876  22345677888999999 8874  6789999999999998632   2  122111110  011111   


Q ss_pred             --------HHHhc--ccCChhHHHHHHHHHHhhhcCCCC-----CC-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562          372 --------LAELN--ENANLSMLRTATWTLFNFCRGKPQ-----PP-FNQVRPALPVLAQLIRSNDEEVLTDACWALSYL  435 (670)
Q Consensus       372 --------l~~l~--~~~~~~~~~~a~~~L~~l~~~~~~-----~~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l  435 (670)
                              -..+.  +..|.+..+..+..+..+......     .. ......++..++..-..++.++...++..-..+
T Consensus       292 i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L  371 (1023)
T 4hat_C          292 VMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNL  371 (1023)
T ss_dssp             TCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             hCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence                    11111  223556666677776655543311     00 111122344555555567788877776655455


Q ss_pred             ccC---C---hHHHHHHHHcCCHHHHHHhcCCCC---------ccc-h--------hHHH----HHHHHhhcCCc-hhhH
Q 037562          436 SDG---T---NDKVQAVIEAGVYPRLVELLGHSS---------SSV-L--------TPAL----RTIRNIVKGDD-FQTQ  486 (670)
Q Consensus       436 ~~~---~---~~~~~~~~~~~~i~~L~~lL~~~~---------~~v-~--------~~a~----~~L~~l~~~~~-~~~~  486 (670)
                      +..   .   ......++. .+++.++..+..+.         .+. +        ....    .+|..++.-.. +...
T Consensus       372 ~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~  450 (1023)
T 4hat_C          372 VADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE  450 (1023)
T ss_dssp             HHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            421   0   111121222 45666666666543         011 0        0111    22222221111 1111


Q ss_pred             HHHhCCChHHHHHhhccC-CchhHHHHHHHHHHHhhcCCHHH-HHHHHhcCChHHHHHHhhc-----CChhHHHHHHHHH
Q 037562          487 CIINCGALPYFLDMLVHN-HEESIKKEVSWIISNITCGNREQ-IQAVIDSGLIGPIVNLLQN-----TEFDTKKEAAWAI  559 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL  559 (670)
                           -.++.+.+.+.+. .+...++.++|+++.++.+..+. ...++ ..+++.|+.+...     ....++..+++++
T Consensus       451 -----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l  524 (1023)
T 4hat_C          451 -----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVV  524 (1023)
T ss_dssp             -----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence                 1233344444432 27889999999999998753332 22222 2377888888763     2345667788999


Q ss_pred             HHhcCCC--CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          560 SNATKFG--THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       560 ~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      +..+..-  .++..+.     ++..|.+.+.+.++.+...|++++.++.+.+..
T Consensus       525 Gry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          525 GQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            8876531  2333222     566677777778899999999999999987553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.59  E-value=3.4e-06  Score=76.92  Aligned_cols=124  Identities=13%  Similarity=0.122  Sum_probs=88.8

Q ss_pred             CCcEEEEecC-CCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccc
Q 037562           48 NLVILCVHCC-DHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVI  126 (670)
Q Consensus        48 ~L~~L~i~~c-~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~  126 (670)
                      .|+.+.+.+. +.++.++..+..+++|+.|+++++ .++.+   +.+..+++|++|++++|. ++.++        ....
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l---~~~~~l~~L~~L~l~~n~-l~~l~--------~~~~   90 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKI---SSLSGMENLRILSLGRNL-IKKIE--------NLDA   90 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCC---CCHHHHTTCCEEEEEEEE-ECSCS--------SHHH
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCccc---cccccCCCCCEEECCCCC-ccccc--------chhh
Confidence            4566666554 345556656677899999999988 46664   367789999999999884 44442        1223


Q ss_pred             cccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc--CCcCCCCccceeeeec
Q 037562          127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG--GELSTPNLHKVQLSRW  189 (670)
Q Consensus       127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~--~~~~~~~L~~l~i~~~  189 (670)
                      .+|+|+.|.++++ .++.++.   ...+++|+.|++.++. +..+|.  ....+++|+.|++++.
T Consensus        91 ~~~~L~~L~L~~N-~l~~l~~---~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           91 VADTLEELWISYN-QIASLSG---IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHCSEEEEEEE-ECCCHHH---HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             cCCcCCEEECcCC-cCCcCCc---cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence            4689999999987 5666542   4467899999999884 555554  4556899999988654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.57  E-value=0.019  Score=65.99  Aligned_cols=350  Identities=11%  Similarity=0.068  Sum_probs=184.8

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHH----H--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVI----Q--SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG  312 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~--~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  312 (670)
                      .++.+++.+  ++++.+..|+.++..+............+    .  .+..+.+...+...+ .+.....++.+..++..
T Consensus       242 ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~  318 (963)
T 2x19_B          242 LIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGEN  318 (963)
T ss_dssp             HHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
Confidence            356666665  35778899999999998753111111111    1  112223333334455 56666677777776641


Q ss_pred             Chhh-------HHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chhHHHHHh--cCChHH
Q 037562          313 TSEN-------TKVVIDHGAVPIFVKLLAS-----PSVDVRKQTVWALGNVAGDS--------PRCRDLVLS--QGALIP  370 (670)
Q Consensus       313 ~~~~-------~~~i~~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~--------~~~~~~i~~--~~~i~~  370 (670)
                      .+..       ...+.  .+++.++.....     .++.+...++..+..++...        +.....+..  ...++.
T Consensus       319 ~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  396 (963)
T 2x19_B          319 HSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV  396 (963)
T ss_dssp             HHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            1110       11111  345555555554     35566777777766665311        111111110  012344


Q ss_pred             HHHHhcccCCh--------------hHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh----ccCChhHHHHHHHHH
Q 037562          371 LLAELNENANL--------------SMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI----RSNDEEVLTDACWAL  432 (670)
Q Consensus       371 Ll~~l~~~~~~--------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL----~~~~~~v~~~al~~L  432 (670)
                      ++..+....+.              +.++.+..+|..++...+   ......+++.+...+    .+.+...++.++.++
T Consensus       397 ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al  473 (963)
T 2x19_B          397 LLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF  473 (963)
T ss_dssp             HHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            44444211110              223455556655553321   122233444555555    456778899999999


Q ss_pred             HHhccCChHHHHHHHHcCCHHHHHHhc---CCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhH
Q 037562          433 SYLSDGTNDKVQAVIEAGVYPRLVELL---GHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI  509 (670)
Q Consensus       433 ~~l~~~~~~~~~~~~~~~~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v  509 (670)
                      +.++.......     ...++.++..+   .++++.++..++++++.++..-..... .+ ..+++.++..+.+   +.|
T Consensus       474 ~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~---~~V  543 (963)
T 2x19_B          474 QSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN---PEL  543 (963)
T ss_dssp             HHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC---GGG
T ss_pred             HHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC---chH
Confidence            99986643211     12233333332   335677999999999999863222222 22 3688888888853   689


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc
Q 037562          510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL  587 (670)
Q Consensus       510 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll  587 (670)
                      +..|++++.+++........... ..++..+..++..+  +.+.+..+..+++.++....++.....++ ..++.+...+
T Consensus       544 ~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l  621 (963)
T 2x19_B          544 SVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQL  621 (963)
T ss_dssp             HHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHH
Confidence            99999999999864332111111 12344455555542  56889999999999987543222222222 1444444433


Q ss_pred             ----cC-CChHHHH---HHHHHHHHHHHh
Q 037562          588 ----LC-ADPKIVT---VCLEGLENILKV  608 (670)
Q Consensus       588 ----~~-~~~~v~~---~a~~~l~~l~~~  608 (670)
                          +. .+++.+.   ..+.++..+++.
T Consensus       622 ~~~~~~~~~~~~~~~~~~~l~~l~~i~~~  650 (963)
T 2x19_B          622 EKLAEEIPNPSNKLAIVHILGLLSNLFTT  650 (963)
T ss_dssp             HHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                22 2454444   445556555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.56  E-value=0.00017  Score=64.07  Aligned_cols=105  Identities=12%  Similarity=0.133  Sum_probs=73.1

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      +|+.|.+.++. ++.++......+++|++|+++++ .+..+++. +..+++|+.|+++++ +++.+ ++..+..+++|++
T Consensus        29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~  104 (177)
T 2o6r_A           29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSL-PNGVFDKLTQLKE  104 (177)
T ss_dssp             TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCE
T ss_pred             CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-Ccccc-CHHHhhCCcccCE
Confidence            89999999874 77766554467899999999987 47777665 367899999999987 45554 2234567889999


Q ss_pred             eccccccccceecccccccccccccccccccccccccc
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQM  139 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  139 (670)
                      |+++++. ++.++.       .....+++|+.|.+.+.
T Consensus       105 L~l~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          105 LALDTNQ-LKSVPD-------GIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             EECCSSC-CSCCCT-------TTTTTCTTCCEEECCSS
T ss_pred             EECcCCc-ceEeCH-------HHhcCCcccCEEEecCC
Confidence            9998873 444321       11123556666666544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.49  E-value=0.0003  Score=63.41  Aligned_cols=58  Identities=16%  Similarity=0.131  Sum_probs=34.1

Q ss_pred             ccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeee
Q 037562          128 FRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSR  188 (670)
Q Consensus       128 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~  188 (670)
                      +++|+.|.+++.. ++.+... ....+++|+.|++.++ ++..+|.+ ...+++|+.|++++
T Consensus        77 l~~L~~L~Ls~N~-l~~i~~~-~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           77 MTQLLTLILSYNR-LRCIPPR-TFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CTTCCEEECCSSC-CCBCCTT-TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCEEECCCCc-cCEeCHH-HhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence            4555555555432 3333332 2345677888888775 46667665 34577888887753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.49  E-value=0.00039  Score=62.64  Aligned_cols=125  Identities=16%  Similarity=0.160  Sum_probs=77.8

Q ss_pred             cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC--Cccccccceeeecccccccccccchhhhccccccee
Q 037562           25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +.+.+++. +++.+|..   ..++|+.|+++++ .+..+++.  +..+++|++|+++++ .++.+. +..+..+++|++|
T Consensus        11 ~~l~~s~~-~l~~ip~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRD---IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIE-PNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTS-CCSSCCSC---CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEE
T ss_pred             CEEEcCCC-CcCcCccC---CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcC-HhHcCCcccCCEE
Confidence            45555543 45666642   2348888888877 46666553  567888888888877 344432 2445678888888


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      +++++. ++.+..       .....+++|+.|.+++. +++.+... ....+++|+.|++.+.+
T Consensus        84 ~Ls~N~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           84 QLGENK-IKEISN-------KMFLGLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             ECCSCC-CCEECS-------SSSTTCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCC
T ss_pred             ECCCCc-CCccCH-------HHhcCCCCCCEEECCCC-cCCeeCHH-HhhcCCCCCEEEeCCCC
Confidence            888764 444321       12234778888888775 34444332 24457888888887654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.0037  Score=60.01  Aligned_cols=188  Identities=11%  Similarity=0.110  Sum_probs=126.0

Q ss_pred             HHHhcCCCCccchhHHHHHHHHhhcCCchhh--HHHH--hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCC------
Q 037562          455 LVELLGHSSSSVLTPALRTIRNIVKGDDFQT--QCII--NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGN------  524 (670)
Q Consensus       455 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~--~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~------  524 (670)
                      +-.-|.+.+|..|..|+..+..+....+...  ....  -....+.+...+.+. +..+...++.++..++...      
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            5577899999999999999988776443211  1111  113456677788888 9999999999999887521      


Q ss_pred             HHHHHHHHhcCChHHHHHH-hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHH
Q 037562          525 REQIQAVIDSGLIGPIVNL-LQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE  603 (670)
Q Consensus       525 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~  603 (670)
                      ....... -..+++.|+.- +.+....++..|..++..++....+..  .     +++.+...+++.+|.++..++..|.
T Consensus        93 ~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~--~-----~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT--Q-----SVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH--H-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH--H-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence            1111111 23467777764 667788899999888888765422111  1     3566778889999999999999999


Q ss_pred             HHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562          604 NILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWS  662 (670)
Q Consensus       604 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~  662 (670)
                      .++........      .......     ..++.+..+.++.+++||..|..++-.+|.
T Consensus       165 ~~l~~fg~~~~------~~k~~l~-----~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          165 ELMAAFGLTNV------NVQTFLP-----ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHTTTTC------CHHHHHH-----HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcC------CchhHHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            98875432110      1111111     124567778899999999999998877763

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.38  E-value=0.0031  Score=71.74  Aligned_cols=307  Identities=8%  Similarity=-0.013  Sum_probs=167.6

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChH
Q 037562          292 RQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP--RCRDLVLSQGALI  369 (670)
Q Consensus       292 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~~~i~  369 (670)
                      +.+ +.++..++.++.....  --....+++.+.++.+..++.+  ++++..|+.+|..+.....  ..+..++..=.+.
T Consensus       204 ~~~-~~l~~~~L~~l~s~i~--wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~  278 (980)
T 3ibv_A          204 AKN-YGTVGLCLQVYAQWVS--WININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN  278 (980)
T ss_dssp             TTC-HHHHHHHHHHHHHHTT--TSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             cCC-HHHHHHHHHHHHHHHh--hcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence            355 7899999999999887  2234556666788888888864  7999999999999984432  2222222210011


Q ss_pred             HHHHHhcc-cCChhHHHHHHHHH-------HhhhcCCCC-CC-------hhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 037562          370 PLLAELNE-NANLSMLRTATWTL-------FNFCRGKPQ-PP-------FNQVRPALPVLAQLIRSNDEEVLTDACWALS  433 (670)
Q Consensus       370 ~Ll~~l~~-~~~~~~~~~a~~~L-------~~l~~~~~~-~~-------~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~  433 (670)
                      ..+..+.. ..|.++.+..+..+       ..+ ...+. ..       .....+.++.++.++.+++.++...++..+.
T Consensus       279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~  357 (980)
T 3ibv_A          279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS  357 (980)
T ss_dssp             HHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            11221211 45666554333333       233 22221 01       1333678899999999888888777666655


Q ss_pred             HhccC---------ChHHHHHHHHcCCHHHHHHhcCCCCc----------------cchhHHHHHHHHhhcCCchhhHHH
Q 037562          434 YLSDG---------TNDKVQAVIEAGVYPRLVELLGHSSS----------------SVLTPALRTIRNIVKGDDFQTQCI  488 (670)
Q Consensus       434 ~l~~~---------~~~~~~~~~~~~~i~~L~~lL~~~~~----------------~v~~~a~~~L~~l~~~~~~~~~~l  488 (670)
                      .+...         -......++. .+++.++..+..++.                +.|......+..++.-.++.....
T Consensus       358 ~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          358 DLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            54421         0122222222 455566666654211                133333322222222122211110


Q ss_pred             HhCCChHHHHHhhc---cCCchhHHHHHHHHHHHhhcCCHHHHHHH-HhcC----ChHHHHHHhh-----cCChhHHHHH
Q 037562          489 INCGALPYFLDMLV---HNHEESIKKEVSWIISNITCGNREQIQAV-IDSG----LIGPIVNLLQ-----NTEFDTKKEA  555 (670)
Q Consensus       489 ~~~~~~~~L~~~l~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~~----~i~~L~~ll~-----~~~~~v~~~a  555 (670)
                      +-.-+.+.+.+.+.   +. +...++.|..+++.++.+........ -...    +++.+..++.     .+.+.|+..+
T Consensus       437 ~~~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~  515 (980)
T 3ibv_A          437 MYSAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLY  515 (980)
T ss_dssp             HHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            00011222223332   23 67788999999999987533211110 0111    3444555544     5678999999


Q ss_pred             HHHHHHhcCCC--CHHHHHHHHHcCCcHHHHh--hccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          556 AWAISNATKFG--THEQIKHLVREGCVKPLCD--LLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       556 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~--ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      +++++..+..-  .++....     +++.+++  -+.++++.|+.+|..++.++++....
T Consensus       516 ~~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          516 MEILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            99999987642  1221111     3444444  45567889999999999999987654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.36  E-value=4.1e-05  Score=77.16  Aligned_cols=83  Identities=13%  Similarity=0.003  Sum_probs=39.6

Q ss_pred             cccEEEeccCcCcccccc----cccccCC-CCcEEEEecCCCCccccC-CCcc-----ccccceeeecccccccccccch
Q 037562           23 EVKISEAYNCYRLENILI----EESSVMN-NLVILCVHCCDHLINLVP-SSTS-----FQNLTNLVVSHCKRLKIVLTSS   91 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~----~~~~~~~-~L~~L~i~~c~~l~~~~~-~~~~-----~~~L~~L~i~~c~~l~~l~~~~   91 (670)
                      +|++|++++|. ++..+.    .....++ +|++|++++|. +....+ ....     +++|++|++++|. +....+..
T Consensus        23 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~   99 (362)
T 3goz_A           23 GVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDE   99 (362)
T ss_dssp             TCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHH
T ss_pred             CceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHH
Confidence            46777776664 444432    2223455 67777776663 333211 1111     2566666666664 33221110


Q ss_pred             ---hhhcc-cccceecccccc
Q 037562           92 ---IAKTL-VRLRYMEIESCD  108 (670)
Q Consensus        92 ---~~~~l-~~L~~L~i~~c~  108 (670)
                         .+..+ ++|++|++++|.
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHHhCCCCccEEECcCCc
Confidence               12223 566666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.32  E-value=4.7e-05  Score=76.71  Aligned_cols=84  Identities=13%  Similarity=0.127  Sum_probs=47.1

Q ss_pred             ccccEEEeccCcCcccccccc----cccC-CCCcEEEEecCCCCccccCC-----Ccc-ccccceeeeccccccccccc-
Q 037562           22 MEVKISEAYNCYRLENILIEE----SSVM-NNLVILCVHCCDHLINLVPS-----STS-FQNLTNLVVSHCKRLKIVLT-   89 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~----~~~~-~~L~~L~i~~c~~l~~~~~~-----~~~-~~~L~~L~i~~c~~l~~l~~-   89 (670)
                      .+|++|++++|. ++......    ...+ ++|++|++++|. +...+..     ... .++|++|++++|. +..... 
T Consensus        80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~  156 (362)
T 3goz_A           80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSD  156 (362)
T ss_dssp             TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHH
T ss_pred             CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHH
Confidence            478889888885 44333211    1233 788888888875 4333221     111 2478888888773 332110 


Q ss_pred             --chhhhccc-ccceecccccc
Q 037562           90 --SSIAKTLV-RLRYMEIESCD  108 (670)
Q Consensus        90 --~~~~~~l~-~L~~L~i~~c~  108 (670)
                        ...+..++ +|++|++++|.
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHhcCCccccEeeecCCC
Confidence              12233444 78888887774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.26  E-value=0.0013  Score=59.23  Aligned_cols=125  Identities=13%  Similarity=0.151  Sum_probs=87.9

Q ss_pred             cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceecc
Q 037562           25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEI  104 (670)
Q Consensus        25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i  104 (670)
                      +.+.+++. +++.+|..   ..++|+.|++++.. +..++..+..+++|+.|+++++ .++.+ ++..+..+++|++|++
T Consensus        13 ~~l~~~~~-~l~~ip~~---~~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKG---IPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNN-RISTL-SNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTS-CCSSCCSC---CCTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCC-CCCcCCCC---CCCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCC-cCCEe-CHhHccCCCCCCEEEC
Confidence            44554443 47777743   35799999998874 6677777778899999999987 45554 2344678999999999


Q ss_pred             ccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          105 ESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       105 ~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      +++. ++.+..       .....+++|+.|.+.+. .++.++.+ ....+++|+.|++.+.|
T Consensus        86 s~N~-l~~i~~-------~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           86 SYNR-LRCIPP-------RTFDGLKSLRLLSLHGN-DISVVPEG-AFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CSSC-CCBCCT-------TTTTTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECCSSC
T ss_pred             CCCc-cCEeCH-------HHhCCCCCCCEEECCCC-CCCeeChh-hhhcCccccEEEeCCCC
Confidence            9875 444431       12345789999999885 46666553 24467899999887643

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.20  E-value=0.0036  Score=58.35  Aligned_cols=181  Identities=13%  Similarity=0.069  Sum_probs=118.8

Q ss_pred             HHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc----CCchhhHHH
Q 037562          413 LAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK----GDDFQTQCI  488 (670)
Q Consensus       413 L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~----~~~~~~~~l  488 (670)
                      +...+-+.|..-+..++..|.......+......++ .+++.+.-.+.+++..+...++.+|..+..    ........ 
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~-  128 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE-  128 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH-
Confidence            444555566666666776666654333322221111 123333333446788888888888877642    11111111 


Q ss_pred             HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCC
Q 037562          489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT  567 (670)
Q Consensus       489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  567 (670)
                      -..-++|.|+.-+.+. ...+|..+-.++..+.. ..+.        .+++.+.+-+.+.+..+|..++..+..+.....
T Consensus       129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            0123689999999888 88899998888877754 2222        356677888889999999999999999875321


Q ss_pred             HHHHHHHHHcCCc---HHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562          568 HEQIKHLVREGCV---KPLCDLLLCADPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       568 ~~~~~~l~~~~~i---~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  610 (670)
                      ..      ...++   +.+..++.+.|..||.+|+.++..++....
T Consensus       200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence            11      23478   999999999999999999999998876543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.20  E-value=8.3e-05  Score=69.03  Aligned_cols=185  Identities=17%  Similarity=0.121  Sum_probs=128.6

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 037562          288 EFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGA  367 (670)
Q Consensus       288 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  367 (670)
                      .++.+++ +.+|..++..+                  ....+..++.++++.||..++..|.                  
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------   99 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------   99 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence            4557777 89999988843                  1234777889999999998886421                  


Q ss_pred             hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 037562          368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI  447 (670)
Q Consensus       368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  447 (670)
                      .+.+..++ .+.+..|+..++..+   .              .+.+..+++++++.|+..++..   +.           
T Consensus       100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~---l~-----------  147 (244)
T 1lrv_A          100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQR---IP-----------  147 (244)
T ss_dssp             SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence            12234444 788889998887743   1              0235566788899999888863   21           


Q ss_pred             HcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHH
Q 037562          448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQ  527 (670)
Q Consensus       448 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~  527 (670)
                          .+.+..+++++++.||..++..+                  ..+.+..+++++ ++.||..++..+          
T Consensus       148 ----~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~-d~~VR~aaa~~l----------  194 (244)
T 1lrv_A          148 ----PGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDP-EPEVRRIVASRL----------  194 (244)
T ss_dssp             ----GGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence                12345677888889999887751                  113344667777 999999888652          


Q ss_pred             HHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHH
Q 037562          528 IQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGL  602 (670)
Q Consensus       528 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l  602 (670)
                              ..+.|..++.++++.||..++..+.                   .+.|..+ +++++.|+..+...|
T Consensus       195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                    1245677788999999999998753                   2455556 889999998886654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.17  E-value=0.00011  Score=68.23  Aligned_cols=184  Identities=12%  Similarity=0.058  Sum_probs=128.3

Q ss_pred             hcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562          247 VWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAV  326 (670)
Q Consensus       247 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  326 (670)
                      ++++++.++..|+..+        .           ...+..++++++ +.||..++..+   .               .
T Consensus        59 l~d~~~~VR~~AA~~l--------~-----------~~~l~~L~~D~~-~~VR~~aA~~L---~---------------~  100 (244)
T 1lrv_A           59 LADPFWERRAIAVRYS--------P-----------VEALTPLIRDSD-EVVRRAVAYRL---P---------------R  100 (244)
T ss_dssp             TTCSSHHHHHHHHTTS--------C-----------GGGGGGGTTCSS-HHHHHHHHTTS---C---------------S
T ss_pred             hcCCCHHHHHHHHHhC--------C-----------HHHHHHHccCcC-HHHHHHHHHHC---C---------------H
Confidence            4688899998888743        1           223677788888 89999998642   1               1


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562          327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV  406 (670)
Q Consensus       327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  406 (670)
                      +.+..++.+++..||..++..+   .   +            ..+. .+.++.+..|+..++..+   .           
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~l---~---~------------~~L~-~L~~D~d~~VR~~aA~~l---~-----------  147 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADRL---P---L------------EQLE-QMAADRDYLVRAYVVQRI---P-----------  147 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHS---C---T------------GGGG-GGTTCSSHHHHHHHHHHS---C-----------
T ss_pred             HHHHHHHcCCCHHHHHHHHHhC---C---H------------HHHH-HHHcCCCHHHHHHHHHhc---C-----------
Confidence            4577889999999999888742   1   1            1122 333788899999888632   1           


Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562          407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  486 (670)
                         .+.+..+++++++.|+..++..   +.               .+.+..++.++++.||..++..+            
T Consensus       148 ---~~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------  194 (244)
T 1lrv_A          148 ---PGRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------  194 (244)
T ss_dssp             ---GGGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC------------
T ss_pred             ---HHHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC------------
Confidence               1234567778899999888775   11               13455778889999999888652            


Q ss_pred             HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562          487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS  560 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  560 (670)
                            ..+.|..++.+. +..||..++..++                  .+.+..+ +++++.|+..|...|+
T Consensus       195 ------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          195 ------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             ------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             ------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence                  124567778888 9999999888753                  2344445 8888999998876543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.0085  Score=57.40  Aligned_cols=192  Identities=14%  Similarity=0.102  Sum_probs=124.8

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcH-HHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPI-DEVI--QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS  314 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~--~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  314 (670)
                      ..+| +-+.+.+.+...|.+|+..+.++......... ....  -....+.+-..+.+.+ ..++..++.++..++....
T Consensus        10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred             hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence            3455 66788999999999999999988765321111 1111  1224556667777777 8999999999998875221


Q ss_pred             -----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562          315 -----ENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT  388 (670)
Q Consensus       315 -----~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~  388 (670)
                           .......-..+++.++. .+.+....++..+..++..++...... ..     .++.++..+ .+.++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l  160 (278)
T 4ffb_C           88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA  160 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence                 11111112245677776 478888999999998888776332211 11     134444555 677889999888


Q ss_pred             HHHHhhhcCCCC--C-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562          389 WTLFNFCRGKPQ--P-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG  438 (670)
Q Consensus       389 ~~L~~l~~~~~~--~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~  438 (670)
                      ..|..+......  . .......+++.+.+++.+.|+.||..|..++..+-..
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            888877654211  1 1223355677788899999999999999999887643

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.10  E-value=0.0047  Score=70.21  Aligned_cols=303  Identities=10%  Similarity=0.024  Sum_probs=164.4

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--hhhHHHHHhCCCh
Q 037562          249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT--SENTKVVIDHGAV  326 (670)
Q Consensus       249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~~~i  326 (670)
                      +.++++...++.++......   -....++..+.++.+.+++.+   ++++..|+.+|..+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            46788889999999888764   345677777889989988875   799999999999988633  3333333322111


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCc-----hhHHHH--HhcCChHHHHHHhcccCChhHHHHHHHHH
Q 037562          327 PIFVKLLA--SPSVDVRKQTVWALGNVA------GDSP-----RCRDLV--LSQGALIPLLAELNENANLSMLRTATWTL  391 (670)
Q Consensus       327 ~~L~~lL~--~~~~~v~~~a~~~L~~l~------~~~~-----~~~~~i--~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L  391 (670)
                      ...+..+.  ..+.++.+..+..+..++      ...+     +.+...  .-.+.++.++..+ .+.+.++...+...+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            22222222  366666654444443332      1111     111000  0113677777887 555667766666555


Q ss_pred             HhhhcCC---CC--CChhh----hhhhHHHHHHhhccC-----------C-----hhHHHHHHHHHHHhccCChHHHHH-
Q 037562          392 FNFCRGK---PQ--PPFNQ----VRPALPVLAQLIRSN-----------D-----EEVLTDACWALSYLSDGTNDKVQA-  445 (670)
Q Consensus       392 ~~l~~~~---~~--~~~~~----~~~~i~~L~~lL~~~-----------~-----~~v~~~al~~L~~l~~~~~~~~~~-  445 (670)
                      ..+....   +.  .....    ...+++.++.-++-+           +     .+.|......+..++.-.++..-. 
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            5544221   11  11122    233444444444311           1     124444442222232222222211 


Q ss_pred             HHHcCCHHHHHHhcC---CCCccchhHHHHHHHHhhcCCchhhHHHH-hC----CChHHHHHhhc-----cCCchhHHHH
Q 037562          446 VIEAGVYPRLVELLG---HSSSSVLTPALRTIRNIVKGDDFQTQCII-NC----GALPYFLDMLV-----HNHEESIKKE  512 (670)
Q Consensus       446 ~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~----~~~~~L~~~l~-----~~~~~~v~~~  512 (670)
                      +.+ -+.+.+...+.   +.++..++.|+.+++.++.+-........ ..    .+++.+..+++     .. .+.|+..
T Consensus       437 ~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~  514 (980)
T 3ibv_A          437 MYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL  514 (980)
T ss_dssp             HHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence            111 11122333342   24678899999999999876543222110 11    23445555544     44 7899999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh------cCChhHHHHHHHHHHHhcCCC
Q 037562          513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ------NTEFDTKKEAAWAISNATKFG  566 (670)
Q Consensus       513 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~~l~~~~  566 (670)
                      ++++++..+.--..      ....++.++..+-      +++..|+..|+.++.+++..+
T Consensus       515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence            99999998762111      1234555555443      456789999999999998754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.08  E-value=0.00021  Score=71.28  Aligned_cols=154  Identities=18%  Similarity=0.110  Sum_probs=86.9

Q ss_pred             cccEEEeccCcCcc--cc---c---ccccccCCCCcEEEEecCCC----Cc-----cccCCCccccccceeeeccccccc
Q 037562           23 EVKISEAYNCYRLE--NI---L---IEESSVMNNLVILCVHCCDH----LI-----NLVPSSTSFQNLTNLVVSHCKRLK   85 (670)
Q Consensus        23 ~L~~L~i~~c~~l~--~~---~---~~~~~~~~~L~~L~i~~c~~----l~-----~~~~~~~~~~~L~~L~i~~c~~l~   85 (670)
                      .++.|.+..+. ..  ..   .   ......+++|+.|.|.+...    +.     .+......+|+|++|.|.+|..++
T Consensus       108 ~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          108 SLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            56777777553 22  11   0   11124678999999965321    10     111222457999999999985543


Q ss_pred             ccccchhhhcccccceeccccccccceecccccccccccccccccccccccccccc-------ccccccCCcccCCCCcc
Q 037562           86 IVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQN-------LISFCSGNCAFTFPSLE  158 (670)
Q Consensus        86 ~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~~~~~~L~  158 (670)
                       +   +.. .+++|++|++..|.--.+.+.      ......+|+|+.|.|+...+       ++.+........||+|+
T Consensus       187 -l---~~~-~~~~L~~L~L~~~~l~~~~l~------~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr  255 (362)
T 2ra8_A          187 -I---GKK-PRPNLKSLEIISGGLPDSVVE------DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK  255 (362)
T ss_dssp             -C---CSC-BCTTCSEEEEECSBCCHHHHH------HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC
T ss_pred             -e---ccc-cCCCCcEEEEecCCCChHHHH------HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC
Confidence             2   112 489999999987751111000      00112589999998863221       22222111123589999


Q ss_pred             EEeEecCCCccccccCC---cCCCCccceeeee
Q 037562          159 ILVVNYCPNMKIFSGGE---LSTPNLHKVQLSR  188 (670)
Q Consensus       159 ~L~i~~C~~l~~~p~~~---~~~~~L~~l~i~~  188 (670)
                      .|.+.+|.--...+...   ...|+|+.|+++.
T Consensus       256 ~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             EEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            99999987532111111   2368999998853

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.05  E-value=0.0066  Score=61.35  Aligned_cols=243  Identities=12%  Similarity=0.081  Sum_probs=157.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--hHHHHHhCCChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE--NTKVVIDHGAVPIFVKLL--AS--------PSVDVRKQTVWALG  349 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~~~i~~L~~lL--~~--------~~~~v~~~a~~~L~  349 (670)
                      +...|+.-|-++. .++|.-|+.+|..+......  .+....+..+.-.++.++  ..        .-..||+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            4566777778889 59999999999998752211  010001112233333332  11        22589999999999


Q ss_pred             HhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHH
Q 037562          350 NVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDAC  429 (670)
Q Consensus       350 ~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al  429 (670)
                      .+ ..-+..      ..++..++..+ .....+++..++-.|.++..--.  .   ..++++.++..|++.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~--~---Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE--D---KDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC--C---HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH--H---HHHHHHHHHhhcCCcccHHHHHHH
Confidence            99 655442      23444455433 55667888888888998821111  1   578899999999999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-Ccc-chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCch
Q 037562          430 WALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSS-VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE  507 (670)
Q Consensus       430 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~-v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~  507 (670)
                      .+|..++  .++...     .++..+...|.+- +-. -.......|+.++......   ......+|.|..++.+. -+
T Consensus       321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999998  222333     3445566666553 222 2334556677776654321   12347899999999999 99


Q ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHH-HHhhcCChhHHHHHHHHHH
Q 037562          508 SIKKEVSWIISNITCGNREQIQAVIDSGLIGPIV-NLLQNTEFDTKKEAAWAIS  560 (670)
Q Consensus       508 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~~a~~aL~  560 (670)
                      .||..+..++..+.  ...         ++..+. .++-.++.+++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999998886  222         222222 3455778888888887775

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.85  E-value=0.025  Score=51.34  Aligned_cols=186  Identities=10%  Similarity=0.105  Sum_probs=127.1

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHc-CCHHHHHH-------hcCCCCcc----ch-hHHHHHHHHhhcCCchhhHH
Q 037562          421 DEEVLTDACWALSYLSDGTNDKVQAVIEA-GVYPRLVE-------LLGHSSSS----VL-TPALRTIRNIVKGDDFQTQC  487 (670)
Q Consensus       421 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~-------lL~~~~~~----v~-~~a~~~L~~l~~~~~~~~~~  487 (670)
                      +++.|+.|+.-|+.--+..++....+..+ |.+..+++       .+..+.-.    -| .+|+..+-.+|. +++....
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            45568778777776555555555555554 55554432       23322211    12 334555555665 5566677


Q ss_pred             HHhCCChHHHHHhhccCC----chhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562          488 IINCGALPYFLDMLVHNH----EESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA  562 (670)
Q Consensus       488 l~~~~~~~~L~~~l~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  562 (670)
                      ++++.+.-.|..+|+...    -+.+|-.+.++++.+.. .+++.+..+++.+++|..++.++.++.-.|..|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            889988888888886542    24578889999999886 6788899999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHH--------cCCcHHHH-hhccCCChHHHHHHHHHHHHHHHhh
Q 037562          563 TKFGTHEQIKHLVR--------EGCVKPLC-DLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       563 ~~~~~~~~~~~l~~--------~~~i~~L~-~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ..  ++....++.+        ..++..++ .+.+.+++.+.+.++++..++.++.
T Consensus       173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            87  3444444332        11232233 3447788899999999988877543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.83  E-value=0.13  Score=58.48  Aligned_cols=356  Identities=11%  Similarity=0.113  Sum_probs=185.9

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCC-------c-----HHHHHHc--CCHHHHHHhhcCCCCHHHHHHHH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSP-------P-----IDEVIQS--GVVPRFVEFLMRQDYPQLQFKAA  303 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-------~-----~~~~~~~--g~l~~L~~ll~~~~~~~v~~~a~  303 (670)
                      +.++.+++.+++ ++......+..|..+...-...       .     .+.+.+.  .+++.+...+....++++...+.
T Consensus       150 ~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L  228 (1073)
T 3gjx_A          150 TFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATL  228 (1073)
T ss_dssp             THHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence            446666666543 2344455666666654431000       0     1112221  12333334454444478888899


Q ss_pred             HHHHHHcCCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHH----HHh--
Q 037562          304 WALTNIASGTSENTKVVIDHGAVPIF-VKLLASPSVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLL----AEL--  375 (670)
Q Consensus       304 ~~L~~l~~~~~~~~~~i~~~~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll----~~l--  375 (670)
                      .+++.+.. - -....+++.+.++.+ ..++  +++.++..|+.+|..+.... ++..+.+..  .+..++    ..+  
T Consensus       229 ~~L~~~~s-W-I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~--lf~~~~~~i~~ilp~  302 (1073)
T 3gjx_A          229 ETLLRFLN-W-IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFET--LFTLTMMQLKQMLPL  302 (1073)
T ss_dssp             HHHHHHTT-T-SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHH--HHHHHHHHHHHHSCT
T ss_pred             HHHHHHHH-h-cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHH--HHHHHHHHHHHhcCC
Confidence            99999886 2 234567788888888 4666  46789999999999987532 222222211  111111    111  


Q ss_pred             ----------cccCChhHHHHHHHHHHhhhcCCC-----C-CChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-
Q 037562          376 ----------NENANLSMLRTATWTLFNFCRGKP-----Q-PPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG-  438 (670)
Q Consensus       376 ----------~~~~~~~~~~~a~~~L~~l~~~~~-----~-~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~-  438 (670)
                                ....|++.....+.++..+.....     . ........++..++.+-..+|.++...++..-..++.. 
T Consensus       303 ~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L  382 (1073)
T 3gjx_A          303 NTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAEL  382 (1073)
T ss_dssp             TSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence                      122234555566666665544320     0 01112233445556666677888877766554443311 


Q ss_pred             ---C------------------hHHH---HHHHHcCCHHHHHHhcCCCCc---------c-chh------------HHHH
Q 037562          439 ---T------------------NDKV---QAVIEAGVYPRLVELLGHSSS---------S-VLT------------PALR  472 (670)
Q Consensus       439 ---~------------------~~~~---~~~~~~~~i~~L~~lL~~~~~---------~-v~~------------~a~~  472 (670)
                         .                  ....   ..++. .+...++..+..+++         + +|.            ..-.
T Consensus       383 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~-~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd  461 (1073)
T 3gjx_A          383 YRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLS-KVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRE  461 (1073)
T ss_dssp             HHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHH-HHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHH
T ss_pred             HhhccccccccccccccccccchhHHHHHHHHHH-HHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHH
Confidence               0                  0111   11111 334445555554321         1 111            0111


Q ss_pred             HHHHhhcCCchhhHHHHhCCChHHHHHhhccC-CchhHHHHHHHHHHHhhcC-CHH-HHHHHHhcCChHHHHHHhhcCC-
Q 037562          473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHN-HEESIKKEVSWIISNITCG-NRE-QIQAVIDSGLIGPIVNLLQNTE-  548 (670)
Q Consensus       473 ~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~-~~~-~~~~l~~~~~i~~L~~ll~~~~-  548 (670)
                      ++..++.-.......+    ..+.+.+.+... .+....+.++|+++.++.. .++ ....+.+  +++.|+.+.+... 
T Consensus       462 ~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~--vi~~Ll~L~e~~~~  535 (1073)
T 3gjx_A          462 TLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT--VIKDLLGLCEQKRG  535 (1073)
T ss_dssp             HHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHSCS
T ss_pred             HHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH--HHHHHhcccccccc
Confidence            2222221111111111    233344444432 2678899999999999764 222 2233333  6777777776441 


Q ss_pred             ----hhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhh
Q 037562          549 ----FDTKKEAAWAISNATKF--GTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAE  612 (670)
Q Consensus       549 ----~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  612 (670)
                          ..++...+++++.....  ..++..+.     ++..|++.+.+.++.|+..|+.++..+...+...
T Consensus       536 kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          536 KDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             cchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence                23455556777775443  13333333     5777888888899999999999999998877653

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.80  E-value=0.056  Score=51.42  Aligned_cols=201  Identities=11%  Similarity=0.102  Sum_probs=145.0

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR----CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF  394 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  394 (670)
                      .+...+.+..|+..|..-+-+.|..+..++.++......    ..+.+..  --..+..++..-.++++.-.+...|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            344567888999999988899999999999998865432    2233332  2333334443344556666666667777


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc---CCHHHHHHhcCCCCccchhHHH
Q 037562          395 CRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLGHSSSSVLTPAL  471 (670)
Q Consensus       395 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~  471 (670)
                      .++..........+.+-.+....+.++-++...|..++..+..........++..   .++...-.+|.+++--++.+++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            7665444444445666677788888999999999999998876666555555554   4677888899999999999999


Q ss_pred             HHHHHhhcCCch---hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          472 RTIRNIVKGDDF---QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       472 ~~L~~l~~~~~~---~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      ..|+.+......   ..+.+-+..-+..++.+|.+. +..++.+|..++.-+.+
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999999874322   233333556688899999999 99999999999988877

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.76  E-value=0.0013  Score=66.41  Aligned_cols=244  Identities=15%  Similarity=0.125  Sum_probs=150.7

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHH-HHHcCCHHHHHHhhc---------CCCCHHHHHHHHHHHHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDE-VIQSGVVPRFVEFLM---------RQDYPQLQFKAAWALTN  308 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~g~l~~L~~ll~---------~~~~~~v~~~a~~~L~~  308 (670)
                      ....|+..|-++..++|--|+-+|+.+........... ....+..-.++..+.         +.-...||+.|+.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            45678888889999999999999998865421100000 000022333333221         22226899999999999


Q ss_pred             HcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562          309 IASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT  388 (670)
Q Consensus       309 l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~  388 (670)
                      + .+-+..      ..++..++..+..+..+++..++-.|..+.   +-... +  .++++.++..| .+.|.+|+..|+
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~-L--d~Vv~aVL~GL-~D~DDDVRAVAA  320 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED-K--DGLCRKLVSLL-SSPDEDIKLLSA  320 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC-H--HHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH-H--HHHHHHHHhhc-CCcccHHHHHHH
Confidence            9 644433      345566666667889999999999999882   11111 1  23467777777 677889999999


Q ss_pred             HHHHhhhcCCCCCChhhhhhhHHHHHHhhccCC--hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccc
Q 037562          389 WTLFNFCRGKPQPPFNQVRPALPVLAQLIRSND--EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSV  466 (670)
Q Consensus       389 ~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v  466 (670)
                      .+|.-++  .+    .....++..+-..|.+.|  ......++..|+.+...+...   ..+...++.+.+++.+.-.+|
T Consensus       321 etLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSV  391 (800)
T 3oc3_A          321 ELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEV  391 (800)
T ss_dssp             HHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHH
T ss_pred             HHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHH
Confidence            9999988  11    223455555555555432  222333444555554332210   112378899999999999999


Q ss_pred             hhHHHHHHHHhhcCCchhhHHHHhCCChHHHH-HhhccCCchhHHHHHHHHH
Q 037562          467 LTPALRTIRNIVKGDDFQTQCIINCGALPYFL-DMLVHNHEESIKKEVSWII  517 (670)
Q Consensus       467 ~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~-~~l~~~~~~~v~~~a~~~L  517 (670)
                      |..++.++..+.  ...         ++..+. .+|-.. +++++..+..+-
T Consensus       392 R~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          392 RTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             HHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            999999997776  111         222222 334444 677777666555

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.76  E-value=0.024  Score=52.83  Aligned_cols=178  Identities=14%  Similarity=0.066  Sum_probs=115.8

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh---cccCChhHHHHHHHHHHhhh----cCCC
Q 037562          327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL---NENANLSMLRTATWTLFNFC----RGKP  399 (670)
Q Consensus       327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l---~~~~~~~~~~~a~~~L~~l~----~~~~  399 (670)
                      +.+...+-+.+..-+..++..|.......+.   .+..  .+..++..+   ..+.+..+...++.+|..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445555556666666666666665433221   1111  222333322   13556777776666666543    3222


Q ss_pred             CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562          400 QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK  479 (670)
Q Consensus       400 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  479 (670)
                      .-.......++|.|+.-+.++.+.+|..+-.++..+....+       ...+++.+...+.+.++.+|..++..++.+..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            22333346788999999988889999988888876653111       12356778888999999999999999999975


Q ss_pred             CCchhhHHHHhCCCh---HHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562          480 GDDFQTQCIINCGAL---PYFLDMLVHNHEESIKKEVSWIISNITC  522 (670)
Q Consensus       480 ~~~~~~~~l~~~~~~---~~L~~~l~~~~~~~v~~~a~~~L~~l~~  522 (670)
                      .....     ...++   +.+..++.+. |..||..|..++..+-.
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            33221     13467   9999999998 99999999999987754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.76  E-value=0.0024  Score=56.27  Aligned_cols=101  Identities=15%  Similarity=0.249  Sum_probs=65.1

Q ss_pred             cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceec
Q 037562           25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYME  103 (670)
Q Consensus        25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~  103 (670)
                      +.+.+++. +++.+|..   ..++|+.|+++++. +..+++ .+..+++|+.|++++. +++.+ ++..+..+++|++|+
T Consensus        15 ~~l~~~~n-~l~~iP~~---~~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQNI-RLASVPAG---IPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCSS-CCSSCCSC---CCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEE
T ss_pred             cEEEeCCC-CCCccCCC---cCCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEE
Confidence            44554443 46666643   24788888888774 556543 4567888899988887 56665 223356788899988


Q ss_pred             cccccccceeccccccccccccccccccccccccccc
Q 037562          104 IESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQ  140 (670)
Q Consensus       104 i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  140 (670)
                      +++.. ++.++.       .....+++|+.|.+.+.+
T Consensus        88 L~~N~-l~~l~~-------~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           88 LNDNH-LKSIPR-------GAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCSSC-CCCCCT-------TTTTTCTTCSEEECCSSC
T ss_pred             CCCCc-cceeCH-------HHhccccCCCEEEeCCCC
Confidence            88763 444431       123457888888887653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.73  E-value=0.0044  Score=61.19  Aligned_cols=32  Identities=13%  Similarity=0.089  Sum_probs=15.3

Q ss_pred             CCCCcEEEEecCCCCccccCC-Cccccccceeeec
Q 037562           46 MNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVS   79 (670)
Q Consensus        46 ~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~   79 (670)
                      +++|++|.+.+  +++.++.. +..+++|+.|.+.
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~  132 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIR  132 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBC
T ss_pred             cCCCcEEECCc--cccchhHHHhhcCcccceEEcC
Confidence            55555555554  44444432 2334555555553

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.73  E-value=0.12  Score=49.28  Aligned_cols=203  Identities=12%  Similarity=0.100  Sum_probs=146.4

Q ss_pred             HHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch----hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          444 QAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF----QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       444 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                      +.++..+.+..++..|..=+.+.|..+..+..++......    ....+..  -.+.+..++..-.++++.-.+...|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            4466779999999999998999999999999999875542    2333332  233333333332245666666666666


Q ss_pred             hhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC---CcHHHHhhccCCChHHHH
Q 037562          520 ITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREG---CVKPLCDLLLCADPKIVT  596 (670)
Q Consensus       520 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~  596 (670)
                      ++. .+.....++..+.+..+.+..+.++.++...|..++..+... .+.....++..+   .+.....++.+++.-++.
T Consensus       150 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          150 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            655 466777788888888999999999999999999999998776 344444444433   466777899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562          597 VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       597 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      .+++.|+.++-+-.+..          .....+....-+..+-.|+.+++..++..|-.+..-+
T Consensus       228 QSlKLLgelLldr~N~~----------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvF  281 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF  281 (341)
T ss_dssp             HHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchHHH----------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeee
Confidence            99999999997654432          2344455555566777888999999998887776544

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.71  E-value=0.061  Score=48.80  Aligned_cols=191  Identities=13%  Similarity=0.082  Sum_probs=125.9

Q ss_pred             CccchhHHHHHHHHhhcCCchhhHHHHhC-CChHHHHHhhcc-------CC-chhHH---HHHHHHHHHhhcCCHHHHHH
Q 037562          463 SSSVLTPALRTIRNIVKGDDFQTQCIINC-GALPYFLDMLVH-------NH-EESIK---KEVSWIISNITCGNREQIQA  530 (670)
Q Consensus       463 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~~~~L~~~l~~-------~~-~~~v~---~~a~~~L~~l~~~~~~~~~~  530 (670)
                      +++.|+.|+.-|+.=-...++....+..+ |.+..|++=+-+       +. ....-   ..|...+..++ ..++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence            44468888777766544444444444433 555554433211       10 11122   23333444454 45788889


Q ss_pred             HHhcCChHHHHHHhhcCC-----hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562          531 VIDSGLIGPIVNLLQNTE-----FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI  605 (670)
Q Consensus       531 l~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  605 (670)
                      ++++++.-.|..++...+     +.+|..+.++++.+...++++...++.+.++++...+.++.++.-.+..|..++.++
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            999999888888888443     578999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhccCCCCCCccHHHHHHHHhchHHH-HHHhhcCCCHHHHHHHHHHHHHh
Q 037562          606 LKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK-IENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      +.++.-....+..   ..+|...   ...+.. +.++...+++.+-+.......++
T Consensus       173 L~dd~GL~YiC~t---~eRF~av---~~vL~~mV~~l~~~ps~RLLKhiircYlRL  222 (268)
T 2fv2_A          173 LLDDTGLAYICQT---YERFSHV---AMILGKMVLQLSKEPSARLLKHVVRCYLRL  222 (268)
T ss_dssp             HHSHHHHHHHTSS---HHHHHHH---HHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             hccchhHHHHHcc---HHHHHHH---HHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            9887766655442   2222211   112222 34566677777665544444333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.65  E-value=0.0038  Score=62.16  Aligned_cols=100  Identities=19%  Similarity=0.164  Sum_probs=67.8

Q ss_pred             EEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccc
Q 037562           27 SEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIE  105 (670)
Q Consensus        27 L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~  105 (670)
                      +...+..+|+.+|.  ...+++|+.|+++++..+..+++ .+..+++|+.|++++. +|+.+. +..+..|++|++|+++
T Consensus        13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECC
T ss_pred             EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCC
Confidence            33333335777776  46778899999988778888875 4667899999999987 577653 3456789999999998


Q ss_pred             cccccceecccccccccccccccccccccccccc
Q 037562          106 SCDKITEIVLVDDVVAQDEVITFRELKELNLLQM  139 (670)
Q Consensus       106 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  139 (670)
                      +. .+..++..       ....+ +|+.|.+.+.
T Consensus        89 ~N-~l~~~~~~-------~~~~~-~L~~l~l~~N  113 (347)
T 2ifg_A           89 FN-ALESLSWK-------TVQGL-SLQELVLSGN  113 (347)
T ss_dssp             SS-CCSCCCST-------TTCSC-CCCEEECCSS
T ss_pred             CC-ccceeCHH-------HcccC-CceEEEeeCC
Confidence            75 35544321       11112 2777877653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.62  E-value=0.0079  Score=59.33  Aligned_cols=78  Identities=18%  Similarity=0.111  Sum_probs=40.8

Q ss_pred             ccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCcc-EEeEecCCCccccccC
Q 037562           96 LVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLE-ILVVNYCPNMKIFSGG  174 (670)
Q Consensus        96 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~-~L~i~~C~~l~~~p~~  174 (670)
                      +++|++|++.++. ++.+..       .....+++|+.+.+.+  +++.+..+ ....+++|+ .+.+.+  +++.++.+
T Consensus       225 ~~~L~~l~L~~n~-i~~I~~-------~aF~~~~~L~~l~l~~--ni~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTIPD-------FTFAQKKYLLKIKLPH--NLKTIGQR-VFSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             CTTCCEEECTTBC-CCEECT-------TTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred             cCCCeEEECCCCC-cceecH-------hhhhCCCCCCEEECCc--ccceehHH-HhhCChhccEEEEEcc--cceEEchh
Confidence            4566666665432 333321       1122355666666654  35555443 244566676 776665  56666543


Q ss_pred             -CcCCCCccceee
Q 037562          175 -ELSTPNLHKVQL  186 (670)
Q Consensus       175 -~~~~~~L~~l~i  186 (670)
                       ...+++|+.+++
T Consensus       292 aF~~c~~L~~l~l  304 (329)
T 3sb4_A          292 AFMGCDNLRYVLA  304 (329)
T ss_dssp             TTTTCTTEEEEEE
T ss_pred             hhhCCccCCEEEe
Confidence             234566666665

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.58  E-value=0.26  Score=46.54  Aligned_cols=171  Identities=15%  Similarity=0.132  Sum_probs=113.4

Q ss_pred             HHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc-cCChhHHH
Q 037562          348 LGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR-SNDEEVLT  426 (670)
Q Consensus       348 L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~  426 (670)
                      |.++..++...-+-++..+++..+...+ +-++.++.+..+..|...+.... -...-....+|.++..+. ++++++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaks-L~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKA-LAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGG-GGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHH-HhhccccccchHHHHHhccCCCcceEE
Confidence            3445556666677788888899888888 77888999999999988887641 122223567788887776 67899999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-------CccchhHHHHHHHHhhc--------------------
Q 037562          427 DACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-------SSSVLTPALRTIRNIVK--------------------  479 (670)
Q Consensus       427 ~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~--------------------  479 (670)
                      .....++|...+.....+..+..|++..+-..+...       +..-+..||.+++|...                    
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            999999999988777777777889998888776431       22234445555544321                    


Q ss_pred             CC--chhhHHHHhCCChHHHHHhhccCC-----chhHHHHHHHHHHHh
Q 037562          480 GD--DFQTQCIINCGALPYFLDMLVHNH-----EESIKKEVSWIISNI  520 (670)
Q Consensus       480 ~~--~~~~~~l~~~~~~~~L~~~l~~~~-----~~~v~~~a~~~L~~l  520 (670)
                      +.  ..+...+++..++..|+..|+.+.     --++|........-+
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lv  471 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILL  471 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH
Confidence            00  112233456677888888886542     124455544444333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.53  E-value=0.0069  Score=53.29  Aligned_cols=102  Identities=18%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             cEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccc
Q 037562           50 VILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFR  129 (670)
Q Consensus        50 ~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~  129 (670)
                      +.+++++. .+..+|...  +++|+.|++++.. ++.+. +..+..+++|++|++++. .++.++.       .....++
T Consensus        15 ~~l~~~~n-~l~~iP~~~--~~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~-------~~~~~l~   81 (174)
T 2r9u_A           15 TLVNCQNI-RLASVPAGI--PTDKQRLWLNNNQ-ITKLE-PGVFDHLVNLQQLYFNSN-KLTAIPT-------GVFDKLT   81 (174)
T ss_dssp             SEEECCSS-CCSSCCSCC--CTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-------TTTTTCT
T ss_pred             cEEEeCCC-CCCccCCCc--CCCCcEEEeCCCC-ccccC-HHHhcCCcCCCEEECCCC-CCCccCh-------hHhCCcc
Confidence            34555443 356666543  3788899888773 55442 344667888999988877 3555432       1123578


Q ss_pred             ccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562          130 ELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus       130 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      +|+.|.+.+. +++.++.+ ....+++|+.|++.+.+
T Consensus        82 ~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           82 QLTQLDLNDN-HLKSIPRG-AFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TCCEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSSC
T ss_pred             hhhEEECCCC-ccceeCHH-HhccccCCCEEEeCCCC
Confidence            8888888874 56665542 24457888888888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.50  E-value=0.0046  Score=54.18  Aligned_cols=102  Identities=14%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      ..+.+++++. +++.+|..   ..++|+.|++++.. +..+++ .+..+++|+.|++++. +++.+ ++..+..+++|++
T Consensus        10 ~~~~l~~s~n-~l~~ip~~---~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~   82 (170)
T 3g39_A           10 SGTTVDCSGK-SLASVPTG---IPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQ   82 (170)
T ss_dssp             ETTEEECTTS-CCSSCCSC---CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCE
T ss_pred             CCCEEEeCCC-CcCccCcc---CCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCcc-ChhhccCCCCCCE
Confidence            3456666653 46666643   34788888888764 556643 4567888899998877 46654 2234567888999


Q ss_pred             eccccccccceecccccccccccccccccccccccccc
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQM  139 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  139 (670)
                      |++++.. ++.++.       .....+++|+.|.+.+-
T Consensus        83 L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           83 LSLNDNQ-LKSIPR-------GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             EECCSSC-CCCCCT-------TTTTTCTTCCEEECCSS
T ss_pred             EECCCCc-cCEeCH-------HHhcCCCCCCEEEeCCC
Confidence            9888763 544431       12335788888888764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.48  E-value=0.25  Score=56.27  Aligned_cols=297  Identities=12%  Similarity=0.135  Sum_probs=155.7

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCC-hhhHHHHHh--CC
Q 037562          249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRF-VEFLMRQDYPQLQFKAAWALTNIASGT-SENTKVVID--HG  324 (670)
Q Consensus       249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L-~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~--~~  324 (670)
                      ..++++...++.++....+--   ....+++.+.++.+ ..++.  + ++++..|+.+|..+...+ ++..+.+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~sWI---~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNWI---PLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhc---CHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            567788888899999887763   35678888888887 46664  4 789999999999987632 222222211  01


Q ss_pred             ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCC-------CchhHHHHHhcCChHHHHHHhcccCChhHH
Q 037562          325 AVPIFVKLL-------------ASPSVDVRKQTVWALGNVAGD-------SPRCRDLVLSQGALIPLLAELNENANLSML  384 (670)
Q Consensus       325 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~  384 (670)
                      ++..+..++             ...+.+....-+..+..+...       .|..+..+..  ++..++.+- ..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence            111121222             112334444455555544311       1111111111  122233333 45677777


Q ss_pred             HHHHHHHHhhhcC----CC-----C------------CChhhhhhhHHHHHHhh----ccCC------------------
Q 037562          385 RTATWTLFNFCRG----KP-----Q------------PPFNQVRPALPVLAQLI----RSND------------------  421 (670)
Q Consensus       385 ~~a~~~L~~l~~~----~~-----~------------~~~~~~~~~i~~L~~lL----~~~~------------------  421 (670)
                      +.+......+...    .+     .            .+.....+++..+...+    ..++                  
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~  448 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK  448 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence            7665554433321    11     0            01111234444443332    2111                  


Q ss_pred             --h-----hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhCC
Q 037562          422 --E-----EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQTQCIINCG  492 (670)
Q Consensus       422 --~-----~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~  492 (670)
                        .     .+...++..+.++..  ++... +    .++.+...+..  .++.....++++++.++..-......-+-..
T Consensus       449 d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~  521 (1073)
T 3gjx_A          449 DTDSINLYKNMRETLVYLTHLDY--VDTEI-I----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT  521 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCH--HHHHH-H----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHhcCCH--HHHHH-H----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence              0     122233333333321  11111 1    22344444443  3577899999999999854332222111124


Q ss_pred             ChHHHHHhhccCC----chhHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562          493 ALPYFLDMLVHNH----EESIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       493 ~~~~L~~~l~~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  565 (670)
                      +++.|+.+.....    ...++...+|+++..+.   ..++...     .++..+++.+.+.++.|+..|+.|+..++..
T Consensus       522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~  596 (1073)
T 3gjx_A          522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIAQK  596 (1073)
T ss_dssp             HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            5667776665431    22355556688888755   2333222     2556777778888899999999999999875


Q ss_pred             C
Q 037562          566 G  566 (670)
Q Consensus       566 ~  566 (670)
                      +
T Consensus       597 C  597 (1073)
T 3gjx_A          597 C  597 (1073)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.40  E-value=0.0095  Score=52.15  Aligned_cols=101  Identities=13%  Similarity=0.095  Sum_probs=61.9

Q ss_pred             cEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccc
Q 037562           50 VILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFR  129 (670)
Q Consensus        50 ~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~  129 (670)
                      +.+++++. .+..+|...  +++|+.|++++. +++.+. +..+..+++|++|++++.. ++.++.       .....++
T Consensus        12 ~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~-------~~f~~l~   78 (170)
T 3g39_A           12 TTVDCSGK-SLASVPTGI--PTTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLPA-------GVFDKLT   78 (170)
T ss_dssp             TEEECTTS-CCSSCCSCC--CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCT-------TTTTTCT
T ss_pred             CEEEeCCC-CcCccCccC--CCCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCCC-cCccCh-------hhccCCC
Confidence            45555553 356666543  477888888876 444442 2345678888888887763 444431       1123577


Q ss_pred             ccccccccccccccccccCCcccCCCCccEEeEecC
Q 037562          130 ELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYC  165 (670)
Q Consensus       130 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C  165 (670)
                      +|+.|.+.+. +++.++.+ ....+++|+.|++.+-
T Consensus        79 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           79 QLTQLSLNDN-QLKSIPRG-AFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCC-ccCEeCHH-HhcCCCCCCEEEeCCC
Confidence            8888888765 46665542 2445778888888763

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.37  E-value=0.12  Score=51.74  Aligned_cols=255  Identities=14%  Similarity=0.075  Sum_probs=146.6

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhh
Q 037562          328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR  407 (670)
Q Consensus       328 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  407 (670)
                      .++...+ +++..+.-|+..+.....+-|+.++.     ++..++.++ .+.|..+|..|...|..+|.+      ....
T Consensus        33 ~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~   99 (507)
T 3u0r_A           33 VILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLP   99 (507)
T ss_dssp             HHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHH
T ss_pred             HHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhh
Confidence            3444333 56899999999999999888887666     578899999 888999999999999999987      2367


Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC-CchhhH
Q 037562          408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG-DDFQTQ  486 (670)
Q Consensus       408 ~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~  486 (670)
                      .+...|+++|+.+++.-...+-.+|..+...++.        +.+..+...+..+++.+|+.++..|..=... ..+...
T Consensus       100 kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~  171 (507)
T 3u0r_A          100 RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLT  171 (507)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSC
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhcc
Confidence            8889999999998877776666777666544332        2334444444446778898888887544332 111111


Q ss_pred             HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhh------cCChhHHHHHHH--
Q 037562          487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQ------NTEFDTKKEAAW--  557 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~--  557 (670)
                      .-++.-++..+.+.|++- ..+-=.-....|..+-. ......+.++     +.+.+...      ..|.+.....+.  
T Consensus       172 ~E~E~~i~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv-----~ii~eQa~L~~~f~~sD~e~vdRlI~C~  245 (507)
T 3u0r_A          172 KEVEELILTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLV-----ELVAEQADLEQTFNPSDPDCVDRLLQCT  245 (507)
T ss_dssp             HHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHH-----HHHHHHHTTTSCCCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHH-----HHHHHHHhccCCCCCcCHHHHHHHHHHH
Confidence            122223445566666554 22222222233333322 2333333332     22222211      134443333333  


Q ss_pred             --HHHHhcCC-CCHHHHHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHhhh
Q 037562          558 --AISNATKF-GTHEQIKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKVGV  610 (670)
Q Consensus       558 --aL~~l~~~-~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~  610 (670)
                        |+--++.. .+.....++.+. ++|.+-.+-... .++.+...++++..+..+..
T Consensus       246 ~~ALP~FS~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          246 RQAVPLFSKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             HHHGGGCBTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence              33333332 245566666654 777665554432 22355555666655554433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.36  E-value=0.006  Score=60.71  Aligned_cols=83  Identities=22%  Similarity=0.136  Sum_probs=48.7

Q ss_pred             EEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccccccccc
Q 037562           53 CVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELK  132 (670)
Q Consensus        53 ~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~  132 (670)
                      +.++..+|..+|. +..+++|+.|+++++.+++.+. +..+..|++|+.|++++. .++.++.       .....+++|+
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-------~~~~~l~~L~   83 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVAP-------DAFHFTPRLS   83 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEECT-------TGGGSCSCCC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeCH-------HHhcCCcCCC
Confidence            3333335666776 6777778888888777777652 234567778888877776 3554431       1122355666


Q ss_pred             cccccccccccccc
Q 037562          133 ELNLLQMQNLISFC  146 (670)
Q Consensus       133 ~L~l~~~~~l~~~~  146 (670)
                      .|.|++ .+|+.++
T Consensus        84 ~L~l~~-N~l~~~~   96 (347)
T 2ifg_A           84 RLNLSF-NALESLS   96 (347)
T ss_dssp             EEECCS-SCCSCCC
T ss_pred             EEeCCC-CccceeC
Confidence            666655 2344443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.18  E-value=0.047  Score=55.18  Aligned_cols=56  Identities=11%  Similarity=0.131  Sum_probs=31.8

Q ss_pred             cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCc-CCCCccceeeee
Q 037562          127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGEL-STPNLHKVQLSR  188 (670)
Q Consensus       127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~-~~~~L~~l~i~~  188 (670)
                      .+++|+.+.|.  .+++.+..+ ....|++|+.+.+.+  +++.++.+.. .+ +|+.+.+.+
T Consensus       298 ~c~~L~~l~l~--~~i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          298 GCPKLARFEIP--ESIRILGQG-LLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             TCTTCCEECCC--TTCCEECTT-TTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC
T ss_pred             CCccCCeEEeC--CceEEEhhh-hhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC
Confidence            35566666665  245555443 244567777777742  4566654432 34 777776654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.11  E-value=0.18  Score=45.50  Aligned_cols=144  Identities=17%  Similarity=0.049  Sum_probs=104.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhHH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAG-DSPRCRD  360 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~  360 (670)
                      ++....+.+++. .++|..|+..|+.. ...         ...++.+.. +..+++-.|++.+..++..++. ..++.  
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            444455666777 79999999999887 311         124566666 5667899999999999999984 33331  


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                            .++.+.... .+.+..+++.|+..+.-.+.. + ........++|.+..+..+++.-|+..+.+.|..++..++
T Consensus       140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                  355566665 888999999998887654443 1 1122235577888888888899999999999999999888


Q ss_pred             HHHHHHHH
Q 037562          441 DKVQAVIE  448 (670)
Q Consensus       441 ~~~~~~~~  448 (670)
                      +....+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.09  E-value=0.042  Score=55.59  Aligned_cols=35  Identities=14%  Similarity=0.308  Sum_probs=23.2

Q ss_pred             ccCCCCccEEeEecCCCccccccCCc-CCCCccceeee
Q 037562          151 AFTFPSLEILVVNYCPNMKIFSGGEL-STPNLHKVQLS  187 (670)
Q Consensus       151 ~~~~~~L~~L~i~~C~~l~~~p~~~~-~~~~L~~l~i~  187 (670)
                      ...|++|+.+.+.  .+++.++.+.. .+++|+.+.|.
T Consensus       296 F~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          296 LEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             TTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEEC
T ss_pred             hhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEEC
Confidence            3456778888776  35677766543 46788888773

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.84  E-value=0.00031  Score=70.60  Aligned_cols=158  Identities=13%  Similarity=0.049  Sum_probs=84.7

Q ss_pred             cccEEEeccCcCccccccccc-----ccCCCCcEEEEecCCCCccc--cCCCccccccceeeecccccccccccch---h
Q 037562           23 EVKISEAYNCYRLENILIEES-----SVMNNLVILCVHCCDHLINL--VPSSTSFQNLTNLVVSHCKRLKIVLTSS---I   92 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~~--~~~~~~~~~L~~L~i~~c~~l~~l~~~~---~   92 (670)
                      +|+.|++++|. +........     ...++|++|++++|. +...  ..-...+++|++|++++| .+.......   .
T Consensus        73 ~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~  149 (372)
T 3un9_A           73 SLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL  149 (372)
T ss_dssp             TCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred             hCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence            67888888775 443221111     123688888888875 3221  111224667888888888 343321111   1


Q ss_pred             h-hcccccceeccccccccceecccccccccccccccccccccccccccccccccc---CCcccCCCCccEEeEecCCCc
Q 037562           93 A-KTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCS---GNCAFTFPSLEILVVNYCPNM  168 (670)
Q Consensus        93 ~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~C~~l  168 (670)
                      + ...++|++|++++|. +.....   ..........++|++|.++++. +.....   .......++|+.|++++|. +
T Consensus       150 L~~~~~~L~~L~Ls~n~-l~~~~~---~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i  223 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNP-LTAAGV---AVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-A  223 (372)
T ss_dssp             HHSTTCCCCEEECCSSC-CHHHHH---HHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-C
T ss_pred             HHhcCCccceeeCCCCC-CChHHH---HHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-C
Confidence            1 235778888888884 321100   0000112346778888888765 332110   0012345688889888884 3


Q ss_pred             c-----ccccCCcCCCCccceeeeec
Q 037562          169 K-----IFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       169 ~-----~~p~~~~~~~~L~~l~i~~~  189 (670)
                      .     .++......++|+.|++++.
T Consensus       224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          224 GDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            3     22332334578888887654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.79  E-value=0.064  Score=48.33  Aligned_cols=148  Identities=13%  Similarity=0.053  Sum_probs=103.1

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH-hcCCCCccchhHHHHHHHHhhc-CCchh
Q 037562          407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE-LLGHSSSSVLTPALRTIRNIVK-GDDFQ  484 (670)
Q Consensus       407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~  484 (670)
                      ...++....+.+++..++|..|+.+|+.+ ....         ..++.+.. +..++++.|+..++.+++.++. ..++ 
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            34555666677777889999999998887 2111         24556666 5567888999999999999885 3332 


Q ss_pred             hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562          485 TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK  564 (670)
Q Consensus       485 ~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  564 (670)
                             ..++.+.....++ +..+|+.|...+.-.+.. +....  --.-+++.+-.+..+++..||+...++|..++.
T Consensus       139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK  207 (240)
T 3l9t_A          139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISK  207 (240)
T ss_dssp             -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence                   2567788899999 999999998887654332 10000  001134555556668889999999999999999


Q ss_pred             CCCHHHHHHHHHc
Q 037562          565 FGTHEQIKHLVRE  577 (670)
Q Consensus       565 ~~~~~~~~~l~~~  577 (670)
                      . +|+-...+++.
T Consensus       208 ~-~Pd~V~~~~~~  219 (240)
T 3l9t_A          208 K-FPDLVKIELKN  219 (240)
T ss_dssp             T-CHHHHHHHHHT
T ss_pred             h-CHHHHHHHHHH
Confidence            7 77766665553

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.01  E-value=0.23  Score=45.66  Aligned_cols=161  Identities=14%  Similarity=0.105  Sum_probs=106.7

Q ss_pred             hhhHHHHhCCChHHHHHhhcc----------CCchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhH
Q 037562          483 FQTQCIINCGALPYFLDMLVH----------NHEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDT  551 (670)
Q Consensus       483 ~~~~~l~~~~~~~~L~~~l~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v  551 (670)
                      ...+.+ ..+|+..|+..|..          ..+......+..++..+.. +......++. .+.+..+...+.++++.+
T Consensus        35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~  112 (233)
T 2f31_A           35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM  112 (233)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            344444 34566666666532          1144667788888888854 4555555554 557888888888889999


Q ss_pred             HHHHHHHHHHhcCCCCHHH-HH----H------HHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562          552 KKEAAWAISNATKFGTHEQ-IK----H------LVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVGVAEMNTGTAV  619 (670)
Q Consensus       552 ~~~a~~aL~~l~~~~~~~~-~~----~------l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  619 (670)
                      +..|+..|..++....++. ..    .      .-+..-+..+++.++ +.+.+.+..++..+..++...+...      
T Consensus       113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~------  186 (233)
T 2f31_A          113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------  186 (233)
T ss_dssp             HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH------
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH------
Confidence            9999988877776532111 11    1      122345667888776 4566788787777777776544322      


Q ss_pred             CCccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 037562          620 GDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK  652 (670)
Q Consensus       620 ~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  652 (670)
                       ..-..+..|...|..+.+..+...+++++...
T Consensus       187 -~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          187 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             -HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred             -HHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence             23346777889999999999998888887655

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.97  E-value=0.14  Score=51.23  Aligned_cols=122  Identities=16%  Similarity=0.201  Sum_probs=93.8

Q ss_pred             chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHh
Q 037562          506 EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCD  585 (670)
Q Consensus       506 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~  585 (670)
                      +...++-|+..+..+...-|+.     +...+..++++.+++|..||..|+..|-.++..   +....     +.+.|.+
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~l-----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~k-----iaDvL~Q  107 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPEL-----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPR-----VADILTQ  107 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGGG-----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHH-----HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhh-----HHHHHHH
Confidence            6889999999999998877773     345678899999999999999999999999985   33333     5788999


Q ss_pred             hccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          586 LLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       586 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      +|..+++.-...+-++|..+++......           +..+      +   .++.. .++.+++++.+.|....
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk~t-----------l~~l------f---~~i~~-~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAKGT-----------LGGL------F---SQILQ-GEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHHHH-----------HHHH------H---HHHHH-SCHHHHHHHHHHHHHHG
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChHHH-----------HHHH------H---HHHcc-cchHHHHHHHHHHHHHH
Confidence            9999999888888999999998766533           1111      2   33333 35788888888886543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.58  E-value=1.1  Score=51.28  Aligned_cols=172  Identities=16%  Similarity=0.132  Sum_probs=108.5

Q ss_pred             hHHHHHHhcc---cCChhHHHHHHHHHHhhh----cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          368 LIPLLAELNE---NANLSMLRTATWTLFNFC----RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       368 i~~Ll~~l~~---~~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                      +..+..++..   ..++.++..+..+++.+.    ...+......+..+...+...+...+.+-+..++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            4444555522   234556666666665554    3333323333456666777777788888889999999999742  


Q ss_pred             HHHHHHHHcCCHHHHHHhcCC-----C--CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc-CCchhHHHH
Q 037562          441 DKVQAVIEAGVYPRLVELLGH-----S--SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH-NHEESIKKE  512 (670)
Q Consensus       441 ~~~~~~~~~~~i~~L~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~~v~~~  512 (670)
                               ..++.+.+++..     .  ...++..|+++|.+++...+...+        +.++++..+ ..++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence                     345667777642     1  224778899999999875544333        456666632 228899999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCH
Q 037562          513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTH  568 (670)
Q Consensus       513 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~  568 (670)
                      |+..|... ..+..         .+..+...+. +.+.+|.......|.+++....|
T Consensus       534 A~~~Lm~t-~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHH-CcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            98888554 22222         2344455555 46778888888888888886554

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=94.58  E-value=2.8  Score=38.70  Aligned_cols=101  Identities=10%  Similarity=0.060  Sum_probs=71.7

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV  319 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  319 (670)
                      +-.+++..+....+.+...+.....++...+.....     .+++.++++..+++ .++|...+..+...+...++... 
T Consensus        17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-   89 (257)
T 3gs3_A           17 VVDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-   89 (257)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred             HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence            344555555433368888888888877664222222     25777788776766 89999999999998864444332 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 037562          320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNV  351 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  351 (670)
                          ..++.|..+++++++.+...++.+..++
T Consensus        90 ----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           90 ----HVINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             ----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                3467888889999999999988888776

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.48  E-value=2.3  Score=48.78  Aligned_cols=166  Identities=16%  Similarity=0.136  Sum_probs=109.6

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHHhh----CCCchhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhh
Q 037562          326 VPIFVKLLAS----PSVDVRKQTVWALGNVA----GDSPRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNF  394 (670)
Q Consensus       326 i~~L~~lL~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l  394 (670)
                      +..+..++.+    .++.+++.|+-+++.+.    ...+.+..     ..++.+.+.+.   ...+.+-+..++.+|.|+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            4566666765    56778888888887775    22222111     12344444332   344566677899999999


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcc-------CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC--CCCcc
Q 037562          395 CRGKPQPPFNQVRPALPVLAQLIRS-------NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG--HSSSS  465 (670)
Q Consensus       395 ~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~  465 (670)
                      ...          ..++.+.+++..       ....++..|+++|..++...+...+        +.+.++..  ..+.+
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence            863          356777777742       1356889999999999876654444        55667763  35667


Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCC
Q 037562          466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGN  524 (670)
Q Consensus       466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  524 (670)
                      +|..|+..|...   +|..       ..+..+...+..+++..|.......|.+++...
T Consensus       530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            888888777432   2221       135567777777668899999999999998753

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.34  E-value=1.4  Score=42.10  Aligned_cols=123  Identities=13%  Similarity=0.089  Sum_probs=76.0

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhhcCC-CCCChhhhhhhHH
Q 037562          336 PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFCRGK-PQPPFNQVRPALP  411 (670)
Q Consensus       336 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~  411 (670)
                      ..+..+-.++++++|+..... .++.+..  ....++..+.   .+.+..++..++..+.|++-.. ..........++.
T Consensus       160 ~~p~n~ml~lR~l~NlF~~~~-g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~  236 (304)
T 3ebb_A          160 GKPANQLLALRTFCNCFVGQA-GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLS  236 (304)
T ss_dssp             SCHHHHHHHHHHHHHGGGSHH-HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHccCCch-hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence            456678899999999986644 5555554  2344444432   3456788888888888888543 1112222334555


Q ss_pred             HHHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC
Q 037562          412 VLAQLIR-SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH  461 (670)
Q Consensus       412 ~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  461 (670)
                      .+..+++ ..|.+....++.+++++...+.+..+.....|+-..+-+..+.
T Consensus       237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            5566665 3588999999999999997755444433333444444444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=94.34  E-value=0.0035  Score=62.89  Aligned_cols=138  Identities=11%  Similarity=0.078  Sum_probs=83.0

Q ss_pred             cCCCCcEEEEecCCCCccccC-----CC-ccccccceeeecccccccccccchhhhcccccceeccccccccceeccccc
Q 037562           45 VMNNLVILCVHCCDHLINLVP-----SS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDD  118 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~~~~-----~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  118 (670)
                      .+++|+.|++++|. +.....     .. ...++|++|++++|. +...........+++|++|++++|. +.....   
T Consensus        70 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~---  143 (372)
T 3un9_A           70 VLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEAC---  143 (372)
T ss_dssp             HHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHH---
T ss_pred             HHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHH---
Confidence            35789999999986 432211     11 123689999999994 4332112234467899999999984 321100   


Q ss_pred             ccccccc-ccccccccccccccccccccccC---CcccCCCCccEEeEecCCCcc-----ccccCCcCCCCccceeeeec
Q 037562          119 VVAQDEV-ITFRELKELNLLQMQNLISFCSG---NCAFTFPSLEILVVNYCPNMK-----IFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       119 ~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~i~~C~~l~-----~~p~~~~~~~~L~~l~i~~~  189 (670)
                      ....... ...++|++|.+++|. ++.....   .....+++|++|++++|. +.     .++......++|+.|+++++
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence            0000001 135789999999984 4332110   012357899999999986 33     23444455679999998764


Q ss_pred             c
Q 037562          190 D  190 (670)
Q Consensus       190 ~  190 (670)
                      .
T Consensus       222 ~  222 (372)
T 3un9_A          222 G  222 (372)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.08  E-value=5.8  Score=46.30  Aligned_cols=300  Identities=9%  Similarity=0.046  Sum_probs=166.9

Q ss_pred             HHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCC----
Q 037562          240 LPAMVDGVWSD--DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLM-RQDYPQLQFKAAWALTNIASG----  312 (670)
Q Consensus       240 i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~----  312 (670)
                      +..+++...++  +.+.+.+|-..|.++-..  .+         ....+...|. ...++.+|..|+..|.+....    
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            44555444444  667788888888777433  11         3344444343 333389999999999987642    


Q ss_pred             -ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562          313 -TSENTKVVIDHGAVPIFVKLLAS---PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT  388 (670)
Q Consensus       313 -~~~~~~~i~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~  388 (670)
                       +++.+..+. ..+++.+......   .+..++...+.++..++...-..  .  -.+.++.++..+..  ++.....++
T Consensus        82 l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~--~--Wp~ll~~L~~~~~~--~~~~~e~~L  154 (1204)
T 3a6p_A           82 MSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ--H--WPDMLIELDTLSKQ--GETQTELVM  154 (1204)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT--T--CTTHHHHHHHHHHT--CHHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc--c--chHHHHHHHHHhcC--CHHHHHHHH
Confidence             344444443 3344444433211   46889999999999887432110  0  12356777777733  445567788


Q ss_pred             HHHHhhhcCC---CCCChhh-------h----hhhHHHHHHhhcc-------------------CChhHHHHHHHHHHHh
Q 037562          389 WTLFNFCRGK---PQPPFNQ-------V----RPALPVLAQLIRS-------------------NDEEVLTDACWALSYL  435 (670)
Q Consensus       389 ~~L~~l~~~~---~~~~~~~-------~----~~~i~~L~~lL~~-------------------~~~~v~~~al~~L~~l  435 (670)
                      .+|..++...   .......       .    ..+++.+..++..                   .+..++..++.++.+.
T Consensus       155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~  234 (1204)
T 3a6p_A          155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY  234 (1204)
T ss_dssp             HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence            8888876541   1111110       0    1333444444432                   1245677788888776


Q ss_pred             ccCChHHHHHHHHcC--CHHHHHHhcCCCCccchhHHHHHHHHhhcCCc--hhhHHHHhC---CChHHHHHhhc------
Q 037562          436 SDGTNDKVQAVIEAG--VYPRLVELLGHSSSSVLTPALRTIRNIVKGDD--FQTQCIINC---GALPYFLDMLV------  502 (670)
Q Consensus       436 ~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~---~~~~~L~~~l~------  502 (670)
                      ..-.+.  ..+.+..  +++.+..++.  +++++..|+.+|..++....  .....++..   ..+..++....      
T Consensus       235 l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~  310 (1204)
T 3a6p_A          235 IDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGG  310 (1204)
T ss_dssp             TTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS
T ss_pred             HhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC
Confidence            543331  2233332  6677776665  46799999999999987442  211112211   11233444432      


Q ss_pred             -cCCchhHHHHHHHHHHHhhcCCHHHHHHHHh-----------cCChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562          503 -HNHEESIKKEVSWIISNITCGNREQIQAVID-----------SGLIGPIVNLLQNTEFDTKKEAAWAISNATKF  565 (670)
Q Consensus       503 -~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  565 (670)
                       ++.+.++.+..+..+..+..   . ...++.           .++++.++.+..+++..+...++.....+...
T Consensus       311 ~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          311 LVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence             11145667777777777652   1 112211           13577777777777777877777766656543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.97  E-value=0.66  Score=46.12  Aligned_cols=161  Identities=14%  Similarity=0.100  Sum_probs=109.3

Q ss_pred             hhhHHHHhCCChHHHHHhhcc----------CCchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhH
Q 037562          483 FQTQCIINCGALPYFLDMLVH----------NHEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDT  551 (670)
Q Consensus       483 ~~~~~l~~~~~~~~L~~~l~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v  551 (670)
                      ..++.+. .+|+..|+.+|..          ..+...+..+..++..+.. +......++. ...+..+...+.+..+.+
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~  178 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM  178 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence            4455554 4567777777641          1144677788888888854 4555555554 557888999998999999


Q ss_pred             HHHHHHHHHHhcCCCCHHH-HHHH----------HHcCCcHHHHhhccC-CChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562          552 KKEAAWAISNATKFGTHEQ-IKHL----------VREGCVKPLCDLLLC-ADPKIVTVCLEGLENILKVGVAEMNTGTAV  619 (670)
Q Consensus       552 ~~~a~~aL~~l~~~~~~~~-~~~l----------~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  619 (670)
                      +..|...|..++....++. ...+          -+..-+..+++.++. .+.+.+..++..+..++...+...      
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~------  252 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------  252 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH------
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH------
Confidence            9999999988876533111 1111          234457788888876 577888888887777776543322      


Q ss_pred             CCccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 037562          620 GDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK  652 (670)
Q Consensus       620 ~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  652 (670)
                       ..-..+..|..+|..+.+..+...+++++...
T Consensus       253 -~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          253 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             -HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             -HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence             23346777889999999999988788876643

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=93.65  E-value=0.55  Score=44.42  Aligned_cols=314  Identities=16%  Similarity=0.192  Sum_probs=174.9

Q ss_pred             HHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC
Q 037562          300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA  379 (670)
Q Consensus       300 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~  379 (670)
                      ..+...|. +..++....+.++..+++..+...+.-++.++....+..|...+....-+..-+  ...+|-++..+..+.
T Consensus       261 tR~FDLL~-LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          261 IRTFDLLG-LLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHHH-HHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCC
T ss_pred             HHHHHHHH-HHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCC
Confidence            33444444 445589999999999999999999999999999999999998874432221111  134777888888888


Q ss_pred             ChhHHHHHHHHHHhhhcCC-CCCChhhhhhhHHHHHHhhcc-------CChhHHHHHHHHHHHhccC-------------
Q 037562          380 NLSMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRS-------NDEEVLTDACWALSYLSDG-------------  438 (670)
Q Consensus       380 ~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~al~~L~~l~~~-------------  438 (670)
                      +.++.....+.|+|...+. +.+......++++.+-..+..       .+..-+..++.+++|-.+.             
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N  417 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN  417 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence            9999999999999999887 444455557888888776642       1333344444444332210             


Q ss_pred             ------Ch-H--HHHHHHHcCCHHHHHHhcCCCCc------cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc
Q 037562          439 ------TN-D--KVQAVIEAGVYPRLVELLGHSSS------SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH  503 (670)
Q Consensus       439 ------~~-~--~~~~~~~~~~i~~L~~lL~~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~  503 (670)
                            .+ +  +...+++.+++..++.+|+-+.-      ++|...++..--+... +..-+    .++    .....+
T Consensus       418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRT-P~~Pk----d~~----l~VtDd  488 (619)
T 3c2g_A          418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRT-PFVPK----DGV----LNVIDE  488 (619)
T ss_dssp             SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTC-TTSCC----TTG----GGCCCT
T ss_pred             CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcC-CCCch----hhh----ccccch
Confidence                  01 1  11224444677777777765432      2444455444433332 11100    111    111111


Q ss_pred             CCchhHHHHHH----HHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 037562          504 NHEESIKKEVS----WIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREG  578 (670)
Q Consensus       504 ~~~~~v~~~a~----~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  578 (670)
                      .....+.-..+    |+.+.=.. ...+..+.+++ ..+..|+.+++.-..+.  +++..+..                 
T Consensus       489 ~rk~NLvGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc~~E~--qVAh~~Ys-----------------  548 (619)
T 3c2g_A          489 NRKENLIGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQCGAEK--EVAQYSYS-----------------  548 (619)
T ss_dssp             TTCCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHTTCHH--HHHHTTTT-----------------
T ss_pred             hhhhhhHHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHhhhHH--HHHhheee-----------------
Confidence            11122222233    33222211 23344555554 35566666665322221  11111111                 


Q ss_pred             CcHHHHhhccCC--ChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 037562          579 CVKPLCDLLLCA--DPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEI  656 (670)
Q Consensus       579 ~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~  656 (670)
                       +..=..++++.  .|.....++..-..+++.++.....             -  .-.-..++-+.+|+++++.+.|..+
T Consensus       549 -IsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad~-------------W--~i~r~tle~l~NHsNsDIa~aasSL  612 (619)
T 3c2g_A          549 -IDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCPTRADI-------------W--TIDRPMLEGLTNHRNSDIAKAANSL  612 (619)
T ss_dssp             -SCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHHH-------------S--CCCHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             -ccCchhhhcccccChHHHHHHHHHHHHHHHhCcchhcc-------------c--eechHHHHHHhcCCCchHHHHHHHH
Confidence             22223455443  4566667777777777655432210             0  0012446788999999999988888


Q ss_pred             HHHhc
Q 037562          657 LETYW  661 (670)
Q Consensus       657 l~~~~  661 (670)
                      +.++-
T Consensus       613 L~rfP  617 (619)
T 3c2g_A          613 LSRFP  617 (619)
T ss_dssp             HTTSC
T ss_pred             HHhCC
Confidence            87653

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=92.80  E-value=5.7  Score=39.05  Aligned_cols=88  Identities=9%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 037562          253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKL  332 (670)
Q Consensus       253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~l  332 (670)
                      +.+...+..+.+++-+.+..     .-..+++.++++-.+++ .++|..++..|...+....+...     .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46888888888875542121     22458999999988888 89999999999998864444332     346788888


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 037562          333 LASPSVDVRKQTVWALGNV  351 (670)
Q Consensus       333 L~~~~~~v~~~a~~~L~~l  351 (670)
                      +.++++.+...++.+.+++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            9889999999988888876

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.61  E-value=4.6  Score=36.81  Aligned_cols=123  Identities=11%  Similarity=0.136  Sum_probs=77.8

Q ss_pred             HHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHcCCChhhHHHHHh-CCChHHHHHhhCCCCHHHHH
Q 037562          274 IDEVIQSGVVPRFVEFLMR----Q------DYPQLQFKAAWALTNIASGTSENTKVVID-HGAVPIFVKLLASPSVDVRK  342 (670)
Q Consensus       274 ~~~~~~~g~l~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~v~~  342 (670)
                      ++.+ ..+++..|+..|..    .      ...+.+..+++||..+.. +....+.++. .+++..+...+.++++.++.
T Consensus        37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~  114 (233)
T 2f31_A           37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMI  114 (233)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHH
T ss_pred             HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence            3444 34556666665532    1      115778899999999987 5555665554 56789999999999999999


Q ss_pred             HHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          343 QTVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       343 ~a~~~L~~l~~~~~-~~-~~~i~----------~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                      .++..|..+|.... .. ...+.          +..-+.+++..+....+.+.+..++..+..+....
T Consensus       115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~  182 (233)
T 2f31_A          115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA  182 (233)
T ss_dssp             HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCC
Confidence            99999998886543 22 22222          22235556666644445555555555555555543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.16  E-value=2  Score=42.78  Aligned_cols=161  Identities=13%  Similarity=0.091  Sum_probs=105.6

Q ss_pred             hhhHHHHhCCChHHHHHhhcc----C------CchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhH
Q 037562          483 FQTQCIINCGALPYFLDMLVH----N------HEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDT  551 (670)
Q Consensus       483 ~~~~~l~~~~~~~~L~~~l~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v  551 (670)
                      ...+.+. .+|+..|+.+|..    .      .+......+..+|..+.. +......++. .+.+..+...+.+.++.+
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~  116 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM  116 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            3344443 3555555555531    1      145667788888888854 3445555554 567888888888888999


Q ss_pred             HHHHHHHHHHhcCCCCHHH-HHH----------HHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562          552 KKEAAWAISNATKFGTHEQ-IKH----------LVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVGVAEMNTGTAV  619 (670)
Q Consensus       552 ~~~a~~aL~~l~~~~~~~~-~~~----------l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  619 (670)
                      +..++..|..++....+.. ...          .-+..-+..+++.++ +.+.+.+..++..+..++...+...      
T Consensus       117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~------  190 (386)
T 2bnx_A          117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------  190 (386)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH------
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH------
Confidence            9999888877776533111 111          122345667777776 5566788787777777776554322      


Q ss_pred             CCccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 037562          620 GDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK  652 (670)
Q Consensus       620 ~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  652 (670)
                       .....+..|..+|..+.+..+....++++...
T Consensus       191 -~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          191 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             -HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             -HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence             23456788889999999999988888887655

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.10  E-value=5.4  Score=39.53  Aligned_cols=156  Identities=11%  Similarity=0.081  Sum_probs=98.1

Q ss_pred             HHHHHHhcCCCh-HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-----------CCCHHHHHHHHHHHHH
Q 037562          241 PAMVDGVWSDDN-SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR-----------QDYPQLQFKAAWALTN  308 (670)
Q Consensus       241 ~~l~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~-----------~~~~~v~~~a~~~L~~  308 (670)
                      ..+++.|+++.. .-....+..|+.........-++.++ .+++..|+.+|..           .+ ...+..+++||..
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d-~~~q~~~l~CLka  146 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYD-SRNQHEIIRCLKA  146 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------C-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhh-HHHHHHHHHHHHH
Confidence            445666664432 22233455555444433223356665 5677888877741           13 5788999999999


Q ss_pred             HcCCChhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHh
Q 037562          309 IASGTSENTKVVI-DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAEL  375 (670)
Q Consensus       309 l~~~~~~~~~~i~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~i~----------~~~~i~~Ll~~l  375 (670)
                      +.. +......++ ....+..+...+.++++.++..|+..|..+|.... .. ...+.          +..-+.+++..+
T Consensus       147 lmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L  225 (383)
T 3eg5_B          147 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL  225 (383)
T ss_dssp             HTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred             Hhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            987 555565555 45788999999999999999999999999996543 22 22322          223466677777


Q ss_pred             cccCChhHHHHHHHHHHhhhcCCC
Q 037562          376 NENANLSMLRTATWTLFNFCRGKP  399 (670)
Q Consensus       376 ~~~~~~~~~~~a~~~L~~l~~~~~  399 (670)
                      ....+.+.+..++..+..+....+
T Consensus       226 ~~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          226 KSGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             STTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HccCcHHHHHHHHHHHHHHHcCCC
Confidence            544555666655555555555543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=91.87  E-value=4.2  Score=47.48  Aligned_cols=284  Identities=10%  Similarity=0.042  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----CchhHHHHHhcCCh
Q 037562          296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSVDVRKQTVWALGNVAGD-----SPRCRDLVLSQGAL  368 (670)
Q Consensus       296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~~i  368 (670)
                      ...|.+|-..|..+-. ++         .+...+...|  .+.+..+|..|+..|.+....     +++.+..+.     
T Consensus        27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence            6788888888888754 22         2334444433  456889999999999987632     223333332     


Q ss_pred             HHHHHHhccc------CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC----
Q 037562          369 IPLLAELNEN------ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG----  438 (670)
Q Consensus       369 ~~Ll~~l~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~----  438 (670)
                      ..++..+...      .+..++..++.+++.++...-.   ......++.++.++++ ++..+..++.+|..+++.    
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~  167 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTF  167 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc
Confidence            2344444322      3567788889899988866411   1235678888888866 556677777777777532    


Q ss_pred             ---ChHHHHH----HHHc--CCHHHHHHhcCC-------------------CCccchhHHHHHHHHhhcCCchhhHHHHh
Q 037562          439 ---TNDKVQA----VIEA--GVYPRLVELLGH-------------------SSSSVLTPALRTIRNIVKGDDFQTQCIIN  490 (670)
Q Consensus       439 ---~~~~~~~----~~~~--~~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~  490 (670)
                         ...+...    +.+.  .++..+..++..                   .+..++..++.++.+...--+  ...+++
T Consensus       168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~  245 (1204)
T 3a6p_A          168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITA  245 (1204)
T ss_dssp             CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHh
Confidence               1111111    1111  223333333322                   122356667777766544222  222334


Q ss_pred             CC--ChHHHHHhhccCCchhHHHHHHHHHHHhhcCC--HHHHHHHHhc---CChHHHHHHhh--------cCChhHHHHH
Q 037562          491 CG--ALPYFLDMLVHNHEESIKKEVSWIISNITCGN--REQIQAVIDS---GLIGPIVNLLQ--------NTEFDTKKEA  555 (670)
Q Consensus       491 ~~--~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~---~~i~~L~~ll~--------~~~~~v~~~a  555 (670)
                      ..  .++.+..++.   +++++..|+.+|..++...  ++....++..   ..+..++....        +.+.++.+..
T Consensus       246 ~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l  322 (1204)
T 3a6p_A          246 ENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL  322 (1204)
T ss_dssp             TTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence            33  6677776665   4578999999999998732  3333323321   11234444432        1235666666


Q ss_pred             HHHHHHhcCCCCHHHHHHHHH-----------cCCcHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 037562          556 AWAISNATKFGTHEQIKHLVR-----------EGCVKPLCDLLLCADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       556 ~~aL~~l~~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  608 (670)
                      +..+..+..    . ...++.           .+.++.+..+..+++..+...++..-..+++.
T Consensus       323 ~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          323 CQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            766666652    1 111111           12466666666777777666666554444443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=91.58  E-value=1.3  Score=42.24  Aligned_cols=152  Identities=9%  Similarity=0.032  Sum_probs=91.1

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC----CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG----VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE  315 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g----~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  315 (670)
                      +..+.+.+ +=..+.++.++..++-++.+  ......+.+.+    ++..+...+.++..+..+..++++++|+.. ++.
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~--p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~  180 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIKH--PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQA  180 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTTS--HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHcC--ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-Cch
Confidence            34445544 22335667777777766543  22222222222    222344445444347789999999999998 677


Q ss_pred             hHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhcccCChhHHHHHHHHH
Q 037562          316 NTKVVIDH--GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC--RDLVLSQGALIPLLAELNENANLSMLRTATWTL  391 (670)
Q Consensus       316 ~~~~i~~~--~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L  391 (670)
                      .++.+...  .+++.+...+.+++..++..++..+.|++......  .+....  .+..+...+....|.+...-++.+|
T Consensus       181 g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~--ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ--CLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH--HHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH--HHHHHHHHHhccCCHHHHHHHHHHH
Confidence            77776643  24445555556678999999999999998321000  011101  2334445554556778888888888


Q ss_pred             HhhhcC
Q 037562          392 FNFCRG  397 (670)
Q Consensus       392 ~~l~~~  397 (670)
                      .++...
T Consensus       259 GtL~~~  264 (304)
T 3ebb_A          259 GTLISD  264 (304)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            888865

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=90.23  E-value=0.1  Score=49.04  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=15.5

Q ss_pred             ccccceeeeccccccccccc-chhhhcccccceecccc
Q 037562           70 FQNLTNLVVSHCKRLKIVLT-SSIAKTLVRLRYMEIES  106 (670)
Q Consensus        70 ~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~  106 (670)
                      ||+|+.|++++. ++..+.. +.....+|+|+.|++++
T Consensus       169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~  205 (267)
T 3rw6_A          169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG  205 (267)
T ss_dssp             CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred             CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence            455555555544 2322211 11233455555555543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.37  E-value=19  Score=35.58  Aligned_cols=124  Identities=10%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             HHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCChHHHHHhhCCCCHHHHH
Q 037562          274 IDEVIQSGVVPRFVEFLMR----Q------DYPQLQFKAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLASPSVDVRK  342 (670)
Q Consensus       274 ~~~~~~~g~l~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~i~~L~~lL~~~~~~v~~  342 (670)
                      ++.+. .+++..|+..|..    .      .....+..+++||..+.. +......++ ..+++..+...+.++++.++.
T Consensus        41 v~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~  118 (386)
T 2bnx_A           41 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMI  118 (386)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHH
T ss_pred             HHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence            34443 4556666665531    1      125788899999999987 555555555 456889999999999999999


Q ss_pred             HHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC
Q 037562          343 QTVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP  399 (670)
Q Consensus       343 ~a~~~L~~l~~~~~-~~-~~~i~----------~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~  399 (670)
                      .++..|..+|.... .. ...+.          +..-+.+++..+..+.+.+.+..++..+..+....+
T Consensus       119 ~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~  187 (386)
T 2bnx_A          119 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  187 (386)
T ss_dssp             HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCC
Confidence            99999988886543 22 22222          223466677777555566666665555555666543

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=87.91  E-value=1.6  Score=35.83  Aligned_cols=77  Identities=13%  Similarity=0.162  Sum_probs=55.3

Q ss_pred             CcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHH-HHhchHHHHHHhhcCCC--------HHH
Q 037562          579 CVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV-EEAEGLEKIENLQSHDD--------NGI  649 (670)
Q Consensus       579 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~~L~~~~~--------~~v  649 (670)
                      +.+.|.+-+++.++.++.+++.+|..++..+...            +...+ .....|..+.++...++        ..|
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V  117 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV  117 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence            5677888888889999999999999998765432            33333 33333444544443333        679


Q ss_pred             HHHHHHHHHHhcCCcccc
Q 037562          650 SEKAVEILETYWSSRVIG  667 (670)
Q Consensus       650 ~~~a~~~l~~~~~~~~~~  667 (670)
                      +..|.++++-+|+++.+.
T Consensus       118 R~~AkEl~~ll~d~~~~~  135 (140)
T 1vdy_A          118 RETAHETISAIFSEENGS  135 (140)
T ss_dssp             HHHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHhCcCCCC
Confidence            999999999999988765

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=87.37  E-value=1.4  Score=36.50  Aligned_cols=74  Identities=7%  Similarity=-0.021  Sum_probs=59.2

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++..+..-+.++++.++..|+..|-.+..++.+.....+.....+..|..+++..++.|+..++..+.......
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f  116 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF  116 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence            34556667788899999999999999999888777766666667777888887788999999999998876543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=86.66  E-value=0.11  Score=46.00  Aligned_cols=63  Identities=8%  Similarity=0.000  Sum_probs=29.9

Q ss_pred             cCCCCcEEEEecCCCCcc-----ccCCCccccccceeeeccccccccccc---chhhhcccccceecccccc
Q 037562           45 VMNNLVILCVHCCDHLIN-----LVPSSTSFQNLTNLVVSHCKRLKIVLT---SSIAKTLVRLRYMEIESCD  108 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~-----~~~~~~~~~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~  108 (670)
                      ..++|++|++++|..+..     +.......++|++|++++|. +.+-..   ...+...++|++|++++|.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            456677777766633422     11111223566666666663 222100   1123344566666666553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=85.98  E-value=0.11  Score=46.01  Aligned_cols=83  Identities=10%  Similarity=-0.019  Sum_probs=51.9

Q ss_pred             CccccEEEeccCcCcccccc----cccccCCCCcEEEEecCCCCcc-----ccCCCccccccceeeeccccccccccc--
Q 037562           21 GMEVKISEAYNCYRLENILI----EESSVMNNLVILCVHCCDHLIN-----LVPSSTSFQNLTNLVVSHCKRLKIVLT--   89 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~----~~~~~~~~L~~L~i~~c~~l~~-----~~~~~~~~~~L~~L~i~~c~~l~~l~~--   89 (670)
                      ...|++|++++|..+..-..    ......++|++|++++|. +..     +.......++|++|++++|. +..-..  
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~  112 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA  112 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHH
Confidence            44899999999866654321    112456899999999986 422     11112234789999999883 332110  


Q ss_pred             -chhhhcccccceeccc
Q 037562           90 -SSIAKTLVRLRYMEIE  105 (670)
Q Consensus        90 -~~~~~~l~~L~~L~i~  105 (670)
                       ...+...++|++|+++
T Consensus       113 l~~~L~~n~~L~~L~L~  129 (185)
T 1io0_A          113 LVEALQSNTSLIELRID  129 (185)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCCCceEEEec
Confidence             1234556788888883

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=85.12  E-value=2.6  Score=39.49  Aligned_cols=134  Identities=15%  Similarity=0.114  Sum_probs=88.0

Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHh--CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc--CChHHHH
Q 037562          466 VLTPALRTIRNIVKGDDFQTQCIIN--CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS--GLIGPIV  541 (670)
Q Consensus       466 v~~~a~~~L~~l~~~~~~~~~~l~~--~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~  541 (670)
                      ....|+..|..++..-....+ +++  ...+..|+ +.... .+.+++.|+.+++...+.+|.....+.+.  .++..+.
T Consensus        44 ~le~aLD~L~ElSHDi~~G~K-I~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf  120 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGYK-IITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM  120 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHHH-HHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhhH-HHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence            345666777777654333333 332  22333333 22334 67899999999999999999988877753  3455554


Q ss_pred             HHhhc-------CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC--ChHHHHHHHHHHHHHHHh
Q 037562          542 NLLQN-------TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA--DPKIVTVCLEGLENILKV  608 (670)
Q Consensus       542 ~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~  608 (670)
                      .-|..       ...-+++.-+.+|.-|+... ..    | ...++..|.+++...  ++.++.+++..+..++..
T Consensus       121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~  190 (315)
T 3qml_C          121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS-ED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKA  190 (315)
T ss_dssp             HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHccc
Confidence            44432       23467778888888888852 11    1 244678888887766  899999999999998863

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=84.61  E-value=19  Score=33.20  Aligned_cols=138  Identities=16%  Similarity=0.233  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562          508 SIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL  586 (670)
Q Consensus       508 ~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  586 (670)
                      +.+.....-+..++.. ++...     .++++.++.+..+.+.++|+..+..+...+.. .++....     +++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~-----~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPH-----VINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHH
Confidence            4666666666665543 33322     23566677766677899999999999888754 3333332     67888889


Q ss_pred             ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCC----ccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          587 LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGD----FNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       587 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ++++++.|.+.++.+..+++...-...-..   ++    .......+.  ..-+.+..+..+.+..++-.|.+.+++..
T Consensus        99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~---~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSL---MEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHHTTS---SSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            999999999999999888876432222110   11    112233332  22445666678889999999999999863

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=83.88  E-value=12  Score=35.13  Aligned_cols=150  Identities=13%  Similarity=0.102  Sum_probs=92.6

Q ss_pred             hhHHHHHHhhccC------ChhHHHHHHHHHHHhccCChHHHHHHHH--cCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562          408 PALPVLAQLIRSN------DEEVLTDACWALSYLSDGTNDKVQAVIE--AGVYPRLVELLGHSSSSVLTPALRTIRNIVK  479 (670)
Q Consensus       408 ~~i~~L~~lL~~~------~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  479 (670)
                      .-+..+..+++++      +.+....++..|..++.. -..--.+.+  ...+..|+ +.....+.+++.|+++|+...+
T Consensus        22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR   99 (315)
T 3qml_C           22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR   99 (315)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence            3344455555554      445567777777777743 222223333  23444444 3344556799999999999999


Q ss_pred             CCchhhHHHHh--CCChHHHHHhhcc----C--CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--Ch
Q 037562          480 GDDFQTQCIIN--CGALPYFLDMLVH----N--HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EF  549 (670)
Q Consensus       480 ~~~~~~~~l~~--~~~~~~L~~~l~~----~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~  549 (670)
                      ++|.....+.+  ..++..+..-|..    .  ....+++.-+.+|..+...+..    + ....+..|.+++...  +.
T Consensus       100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~  174 (315)
T 3qml_C          100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDK  174 (315)
T ss_dssp             TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCH
T ss_pred             cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCH
Confidence            99988776654  2444444443322    1  1335666667777777665322    1 244678888888766  88


Q ss_pred             hHHHHHHHHHHHhcC
Q 037562          550 DTKKEAAWAISNATK  564 (670)
Q Consensus       550 ~v~~~a~~aL~~l~~  564 (670)
                      .++..++..+..+..
T Consensus       175 ~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          175 QLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999988888763

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=83.05  E-value=6.7  Score=38.56  Aligned_cols=140  Identities=16%  Similarity=0.148  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc
Q 037562          509 IKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL  587 (670)
Q Consensus       509 v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll  587 (670)
                      .+.....-+..++. .++.     .-.++++.++.+-.+.+.++|+.++..|...+.. ..+....     +++.|..++
T Consensus        41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL  109 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLL  109 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence            44444555555433 2332     2246888899888888999999999999988764 3333322     677888889


Q ss_pred             cCCChHHHHHHHHHHHHHHHhhhhhhcc-CCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          588 LCADPKIVTVCLEGLENILKVGVAEMNT-GTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       588 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      +++++.|.+.++.+..+++...-...-. +............+.  ...+.|..+..+.+..++-.|.+.+++..
T Consensus       110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            9999999999998888876432111110 000000012233332  22345666678889999999999999863

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=82.59  E-value=2.4  Score=35.36  Aligned_cols=73  Identities=11%  Similarity=-0.042  Sum_probs=60.5

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC------CChHHHHHHHHHHHHHHHh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC------ADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~  608 (670)
                      ++..+..-+.+.++.++..|+..|-.+..++.+.+...+.....+..|+.++..      .++.|+..++..+......
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  127 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  127 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            345666777889999999999999999999888888888777788888888853      5778999999999887654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.00  E-value=2.4  Score=36.05  Aligned_cols=73  Identities=7%  Similarity=-0.032  Sum_probs=58.6

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC-CChHHHHHHHHHHHHHHHh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC-ADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~  608 (670)
                      ++..+..-+.++++.++..|+..|-.+..++.+.+...+.....++.|+.++.. .++.|+..++..+......
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~  126 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE  126 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            345566677888999999999999999998888887777766777778887764 6789999999988887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	670
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	8e-94
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-79
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-35
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-08
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-16
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-06
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-09
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-08
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-04
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	0.001

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  297 bits (760), Expect = 8e-94
 Identities = 231/448 (51%), Positives = 296/448 (66%), Gaps = 7/448 (1%)

Query: 218 QSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEV 277
             +    S            + LP M   + SDD   QL AT  F  +LS +  PPID V
Sbjct: 56  SDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVV 115

Query: 278 IQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS 337
           IQ+GVVPR VEF+       LQ +AAWALTNIASGTS  TKVV+D  AVP+F++LL + S
Sbjct: 116 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 175

Query: 338 VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397
           V+V++Q +WALGNVAGDS   RD VL   A+ P+L  L  +   S++RTATWTL N CRG
Sbjct: 176 VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRG 234

Query: 398 K-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLV 456
           K PQP ++ V  ALP LA+LI S D E L DACWA+SYLSDG  + +QAVI+  +  RLV
Sbjct: 235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 294

Query: 457 ELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWI 516
           ELL H S+ V TPALR + NIV G+D QTQ +IN G LP    +L  + +E+IKKE  W 
Sbjct: 295 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWT 353

Query: 517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH--EQIKHL 574
           ISNIT GN EQIQAVID+ LI P+V LL+  E+ TKKEA WAISNA+  G    + I++L
Sbjct: 354 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL 413

Query: 575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEG 634
           V +GC+KPLCDLL  AD +I+ V L+ LENILK+G  E +      + N+ A  +E+A G
Sbjct: 414 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG--EADKEARGLNINENADFIEKAGG 471

Query: 635 LEKIENLQSHDDNGISEKAVEILETYWS 662
           +EKI N Q ++++ I EKA +I+ETY+ 
Sbjct: 472 MEKIFNCQQNENDKIYEKAYKIIETYFG 499

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  257 bits (655), Expect = 2e-79
 Identities = 193/428 (45%), Positives = 277/428 (64%), Gaps = 13/428 (3%)

Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
           +  +V G+ S++   QL+AT     LLS ++ PPID +I++G++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359
           F++AWALTNIASGTSE TK V+D GA+P F+ LLASP   + +Q VWALGN+AGD    R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 360 DLVLSQGALIPLLAELN----ENANLSMLRTATWTLFNFCRGKPQ-PPFNQVRPALPVLA 414
           DLV+  GA+ PLLA L            LR  TWTL N CR K   PP + V   LP L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 415 QLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
           +L+  ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG +   ++TPALR I
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254

Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS 534
            NIV G D QTQ +I+ GAL  F  +L +     I+KE +W +SNIT G ++QIQ V++ 
Sbjct: 255 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN-IQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKI 594
           GL+  +V +L   +F T+KEAAWAI+N T  GT EQI +LV  G ++PL +LL   D KI
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 373

Query: 595 VTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
           + V L+ + NI +           +G+  + + ++EE  GL+KIE LQ H++  + + ++
Sbjct: 374 IQVILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 426

Query: 655 EILETYWS 662
            ++E Y+S
Sbjct: 427 NLIEKYFS 434

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 492 GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEF-D 550
            ++   +  +  N+ ES  +        ++   +  I  +I +GLI   V+ L  T+   
Sbjct: 13  WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72

Query: 551 TKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607
            + E+AWA++N    GT EQ K +V  G +     LL      I    +  L NI  
Sbjct: 73  IQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 128

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (346), Expect = 1e-35
 Identities = 63/449 (14%), Positives = 125/449 (27%), Gaps = 68/449 (15%)

Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
           +P+ V++L  QD  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP 402
               AL N+   S   +     Q  +   ++ L    N  + +  T  L+N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 403 FNQVRPALPVLAQLIR---------------SNDEEVLTDACWALSYLSDGTNDKVQAVI 447
                    +  ++I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN--- 504
            +G+   L+  + +  ++           +    +   +           L+    N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 505 ----------HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKE 554
                       + +              N +    +  S  I   +NL+  ++ D   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 555 AAWAISNATKFGTHEQI-----KHLVREGCVKPLCDLL-----------------LCADP 592
           A                        ++E  +  +  LL                 +   P
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 593 K----IVTVCLEGLENILKVGVAEMNTGTAV------------GDFNQYAQLVEEAEGLE 636
                +       +  +L       +    +                Q A+    +  L 
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 637 KIENL-QSHDDNGISEKAVEILETYWSSR 664
            I NL +S      +E A  +L   WSS+
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMWSSK 451

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 1e-12
 Identities = 34/298 (11%), Positives = 82/298 (27%), Gaps = 17/298 (5%)

Query: 366 GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRP--ALPVLAQLIRSNDEE 423
           G  IP   +   + +        + + + C         QV     +  L  L+RS ++ 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAK-QQVYQLGGICKLVDLLRSPNQN 59

Query: 424 VLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDD 482
           V   A  AL  L   +                V LL    ++ +       + N+   D+
Sbjct: 60  VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119

Query: 483 FQTQCIINC-------------GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ 529
            + + I +              G      +M     +  +    +  + N++  +  +  
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 530 AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC 589
               SGLI  ++  +QN    ++ +     +                    + L      
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 590 ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDN 647
           A  +  +      ++   +               + +  +  ++ +    NL      
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 38/308 (12%), Positives = 86/308 (27%), Gaps = 28/308 (9%)

Query: 280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVD 339
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 340 VRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA--------------NLSMLR 385
            R         +         L          L     NA              +  M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 386 TATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACW------ALSYLSDGT 439
                L           +     A+     L+  + ++   +AC         S     +
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLD 499
                  ++    P++  LL   +S V+      + N+ +        ++     P    
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 500 MLVHN-----HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFD-TKK 553
           +L  +     + E I     + + N+     +  +    S ++  I+NL +++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 554 EAAWAISN 561
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 7e-08
 Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 9/144 (6%)

Query: 261 LFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVV 320
           L  +             ++   +P+     ++     +    A  L+N++         V
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRV 367

Query: 321 IDHGAVPIFVKLL------ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE 374
           + +   P   +LL       S S D+     + + N+    P+      S   L  ++  
Sbjct: 368 MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL 427

Query: 375 LNENANLSMLRTATWTLFNFCRGK 398
              +A+      A   L +    K
Sbjct: 428 CRSSASPKAAEAARLLLSDMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (198), Expect = 1e-16
 Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 16/372 (4%)

Query: 231 LNLQSKLEI----LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPR 285
           +N Q   E+    +P +   +  +D  +  +A  +   L   +       +++S  +V  
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSA 63

Query: 286 FVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTV 345
            V  +   +  +     A  L N++    E    +   G +P  VK+L SP   V    +
Sbjct: 64  IVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 122

Query: 346 WALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ 405
             L N+       +  V   G L  ++A LN+     +  T           +       
Sbjct: 123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 182

Query: 406 VRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS 465
                  L  ++R+   E L      +  +    +    A++EAG    L   L   S  
Sbjct: 183 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 242

Query: 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR 525
           ++   L T+RN+    D  T+     G L   + +L  +    +    + I+SN+TC N 
Sbjct: 243 LVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNY 298

Query: 526 EQIQAVIDSGLIGPIVNLLQNTEFDTK--KEAAWAISNATKFGTHEQIKH--LVREGCVK 581
           +    V   G I  +V  +          + A  A+ + T      ++    +     + 
Sbjct: 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 358

Query: 582 PLCDLLLCADPK 593
            +  LL      
Sbjct: 359 VVVKLLHPPSHW 370

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 1e-12
 Identities = 70/455 (15%), Positives = 138/455 (30%), Gaps = 34/455 (7%)

Query: 174 GELSTPNLHKVQLSRWDGEEHWI-WVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLN 232
             LS      + + +  G    +  +     ++ +  +  L   L  Q        L+  
Sbjct: 85  HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 144

Query: 233 LQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR 292
           LQ  + +L        +             + +L++        ++ SG     V  +  
Sbjct: 145 LQKMVALLNKTNVKFLAITTD--------CLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 293 QDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA 352
             Y +L       +  + S  S N   +++ G +      L  PS  + +  +W L N++
Sbjct: 197 YTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 353 GDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPV 412
             + +   +    G L+ LL   + N         +    N  + K          AL  
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315

Query: 413 LAQLI--RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPA 470
                  R +  E    A   L+           AV      P +V+LL   S   L  A
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375

Query: 471 LRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN----------- 519
              +   +         +   GA+P  + +LV  H+++ ++                   
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435

Query: 520 ---------ITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ 570
                    I   +      +     I   V LL +   + ++ AA  +    +    E 
Sbjct: 436 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEA 493

Query: 571 IKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605
            + +  EG   PL +LL   +  + T     L  +
Sbjct: 494 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 6e-09
 Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 25/220 (11%)

Query: 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQL 298
           ++  ++     +D +         +     +     + V     +P  V+ L    +  L
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372

Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQ--------------- 343
                  + N+A     N   + + GA+P  V+LL     D +++               
Sbjct: 373 IKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431

Query: 344 -------TVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396
                     AL  +A D    R ++      IPL  +L  +   ++ R A   L    +
Sbjct: 432 MEEIVEGCTGALHILARD-VHNRIVIRGLNT-IPLFVQLLYSPIENIQRVAAGVLCELAQ 489

Query: 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436
            K      +   A   L +L+ S +E V T A   L  +S
Sbjct: 490 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 7e-08
 Identities = 42/352 (11%), Positives = 92/352 (26%), Gaps = 21/352 (5%)

Query: 1   MKVLKIQGYSSWMWKEKVENGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHL 60
            + L               +     +          ++      ++ N +    +  D  
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258

Query: 61  INLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVV 120
                       L  L+ S    +       ++         ++  C       LV  V+
Sbjct: 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 121 AQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPN 180
              +     E     L  + +                 + VV    +             
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW-------- 370

Query: 181 LHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEIL 240
              ++ +        +   +     +   + +L + L                 S     
Sbjct: 371 -PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT------QRRTSMGGTQ 423

Query: 241 PAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQF 300
              V+GV  ++    +E  T  +++L+ D    I  +     +P FV+ L+      +Q 
Sbjct: 424 QQFVEGVRMEE---IVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQ-LLYSPIENIQR 478

Query: 301 KAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA 352
            AA  L  +A    E  + +   GA     +LL S +  V       L  ++
Sbjct: 479 VAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (189), Expect = 3e-16
 Identities = 39/241 (16%), Positives = 88/241 (36%), Gaps = 7/241 (2%)

Query: 274 IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV-KL 332
              V+   + P   E     D  Q +  A   L ++     +N         + + V + 
Sbjct: 10  CLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRY 67

Query: 333 LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLF 392
           L + +  +R +    +G  + +    ++ VL  GAL  LL  L+ +A  ++   A + + 
Sbjct: 68  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 127

Query: 393 NFCRGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGV 451
              R +              VL + ++   +++   + + L  L  G  +    +   G+
Sbjct: 128 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187

Query: 452 YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKK 511
             +LV L+    S      L  + ++V       Q +  C      L+ L+ +  + +++
Sbjct: 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFP---QGVRECREPELGLEELLRHRCQLLQQ 244

Query: 512 E 512
            
Sbjct: 245 H 245

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 250 DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNI 309
             ++++++A      L+                    +   M+Q   +L+ K+A+ L N+
Sbjct: 114 ACDTVRVKALFAISCLVRE--QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 171

Query: 310 ASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP----RCRDLVLSQ 365
             G  E+   +   G V   V L+ +      +  + AL ++  D P     CR+  L  
Sbjct: 172 LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL 231

Query: 366 GALIPLLAELNEN 378
             L+    +L + 
Sbjct: 232 EELLRHRCQLLQQ 244

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 59/503 (11%), Positives = 136/503 (27%), Gaps = 54/503 (10%)

Query: 24   VKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKR 83
            + +++                    +  L       L          +   + +      
Sbjct: 537  LLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN 596

Query: 84   LKIVLTSSIAKTL-VRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNL 142
            L   L S +  TL + L  ++ E     T   L     +  ++     L E   +    L
Sbjct: 597  LGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFL 656

Query: 143  ISFCSGNCAFTFPSLEILVVNY----CPNMKIFSGGELSTPNLHKVQLSRWDGEEHWIWV 198
                      T  +L+IL+ NY       M      EL                     +
Sbjct: 657  RKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTL 716

Query: 199  HDLNTTIKYLYLKKLGEFLQS---------------QRSRISTPVLSLNLQSKLEILPAM 243
              +  +        +   L                      +  V   N    +++L  +
Sbjct: 717  AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRML 776

Query: 244  VDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAA 303
               V+S   +L  + +   I       +    +   + V     +    +    ++  A 
Sbjct: 777  TGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLAL 836

Query: 304  WALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA----------- 352
             +L  +      + ++ +      + ++  +SPS +V+    +ALG+++           
Sbjct: 837  LSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFV 892

Query: 353  ----GDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV-- 406
                   P+ + L+L   +L  +++  +       +      L   C    +   N V  
Sbjct: 893  LQEITSQPKRQYLLLH--SLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAE 950

Query: 407  ----------RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLV 456
                         LP L   + S      +    A+ +        +  +++       +
Sbjct: 951  CLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFL 1009

Query: 457  ELLGHSSSSVLTPALRTIRNIVK 479
            + L     +V   AL T  +   
Sbjct: 1010 KTLEDPDLNVRRVALVTFNSAAH 1032

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 38/284 (13%), Positives = 87/284 (30%), Gaps = 14/284 (4%)

Query: 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS 355
              +F A   L       S       +   V + +KLL   + +V+   V  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 356 PRCRDLVLSQGALIPLLAELNEN---ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPV 412
              +   +    L   +    E     +   L+T    L     G         +    +
Sbjct: 77  KEYQVETIVD-TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 413 LAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALR 472
            + + +  D  V  +A   ++ +       +     + +   L+  L     +V    + 
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTII 194

Query: 473 TIRNIVK--GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA 530
            + ++V   G+            + + L  L  N   S  +     I+ I+     +I  
Sbjct: 195 ALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 248

Query: 531 VIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHL 574
            ++  +I  +V      + + ++    A  +  +    E   H+
Sbjct: 249 YLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV 291

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 7e-05
 Identities = 42/229 (18%), Positives = 75/229 (32%), Gaps = 21/229 (9%)

Query: 191  GEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSD 250
            GE            +K + L+      +  +S  S  + S+++ +  E LP ++  + S 
Sbjct: 840  GEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQ 899

Query: 251  DNS--LQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTN 308
                 L L +    I+  S     P  E I + ++               +   A  L  
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-----HCECAEEGTRNVVAECLGK 954

Query: 309  IASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGAL 368
            +     E          +P     L S S   R   V A+     D P+  D +L     
Sbjct: 955  LTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--C 1004

Query: 369  IPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI 417
            I    +  E+ +L++ R A  T  +    KP      +R  L  +   +
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS----LIRDLLDTVLPHL 1049

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFL---MRQD 294
            ++P +   +   D +   +         +      +    +  +VP  + F+   ++  
Sbjct: 320 YLVPILTQTLTKQDENDDDDDWNPCK--AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 377

Query: 295 YPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
             + +  A  A   I  G   +    +   A+P  ++L+  PSV VR    W +G +   
Sbjct: 378 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437

Query: 355 SPRCRDLVLSQGALIPLLAEL 375
            P   +  ++   L PLL  L
Sbjct: 438 LP---EAAINDVYLAPLLQCL 455

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 53/460 (11%), Positives = 126/460 (27%), Gaps = 29/460 (6%)

Query: 180 NLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEI 239
            + K  L R   +   + V+ +  +   + L K               +     +S+   
Sbjct: 285 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVA 344

Query: 240 LPAMVDGVWSDDNSLQ-----LEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD 294
                DG+  +D+           +   +   S      +  V +  ++P  +  L    
Sbjct: 345 QQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL 404

Query: 295 YPQLQFKAAWALTNIASGTSENTKVVIDHGA--VPIFVKLLASPSVDVRKQTVWALGNVA 352
           +          +  + +      + +I +    +P  ++ L+     VR  T W L   A
Sbjct: 405 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYA 464

Query: 353 GDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPV 412
                       +  +  LL  +  ++N  +   A                  +   L  
Sbjct: 465 HWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDT 523

Query: 413 LAQLIRSNDEEVLTDACWALSYLSD-GTNDKVQAVIEAGVYPRLVELL--GHSSSSVLTP 469
           L         + L     A+  L+D   +   +      + P L++           L P
Sbjct: 524 LVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 583

Query: 470 ALRTIRNIVK--GDDFQT-------------QCIINCGALPYFLDMLVHNHEESIKKEVS 514
            L  + ++       F               Q  +    L           ++       
Sbjct: 584 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL 643

Query: 515 WIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKH 573
            ++S +  G    I+ ++  S ++  +   +Q+   + ++ +   + + TK         
Sbjct: 644 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC 703

Query: 574 LVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEM 613
           +     +  L   L      +       +  I      EM
Sbjct: 704 I--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM 741

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 34/256 (13%), Positives = 83/256 (32%), Gaps = 20/256 (7%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFL-MRQDYP 296
            IL  +V       +   L        L                ++P  ++   M +D  
Sbjct: 519 YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED 578

Query: 297 QLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----------------PSVDV 340
           +  F     L+++A+          +         +  +                P  D 
Sbjct: 579 KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF 638

Query: 341 RKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ 400
               +  L  +A       + ++++  ++ L+ +  ++    + +++   L +  +   Q
Sbjct: 639 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ 698

Query: 401 PPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG 460
                +   +P+L   +      V  +A WA+  +S     ++Q  I   V  +LVE++ 
Sbjct: 699 HVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPM-VLHQLVEIIN 757

Query: 461 HSS--SSVLTPALRTI 474
             +   ++L     TI
Sbjct: 758 RPNTPKTLLENTAITI 773

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 18/167 (10%), Positives = 39/167 (23%), Gaps = 31/167 (18%)

Query: 265 LLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHG 324
           L +  +    DE+ +          L+       +  +A  L                  
Sbjct: 12  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG-----------GQD 50

Query: 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSML 384
           AV + ++  +  +   R    + LG +                   L      + +  + 
Sbjct: 51  AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDKSACVR 104

Query: 385 RTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWA 431
            TA  +    C+  P          +             V     +A
Sbjct: 105 ATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFA 147

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 0.001
 Identities = 41/347 (11%), Positives = 98/347 (28%), Gaps = 44/347 (12%)

Query: 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSF---DRSPPIDEVIQSGVVPRFVEFL-MRQ 293
           ++L        + D     +  +L    L              I   V+   +       
Sbjct: 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619

Query: 294 DYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG 353
               +Q  A  A++ +           ++     + + L       V    V  +G++  
Sbjct: 620 GSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCR 679

Query: 354 DSPRCRDLVLSQGALIPLLAEL--NENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALP 411
                      +  ++ LL E   NEN + S+         +            +   L 
Sbjct: 680 ALQSNIIPFCDE--VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLN 737

Query: 412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPAL 471
            L Q  ++  ++   D    L+ L +   +          Y  +V+ L       + P +
Sbjct: 738 TLQQASQAQVDKSDYDMVDYLNELRESCLE---------AYTGIVQGL-KGDQENVHPDV 787

Query: 472 RTIRNIVKGDDFQTQCIINCGALPYFLDMLVH--NHEESIKKEVSWIISNI--TCGNREQ 527
             ++  V+              +  F+D +    +H + +    + +I ++    G    
Sbjct: 788 MLVQPRVE-------------FILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL 834

Query: 528 IQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHL 574
                   +   +    ++     K  A WA          ++++ L
Sbjct: 835 KLVEARPMIHELLTEGRRSKTNKAKTLARWA---------TKELRKL 872

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	670
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.78
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.76
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.75
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.67
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.61
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.47
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.34
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.34
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.32
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.27
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.23
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.13
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.11
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.11
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.1
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.08
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.97
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.92
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.81
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.81
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.72
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.53
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.48
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.4
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.38
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.29
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.22
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.18
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.13
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.12
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.03
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.01
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.97
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.95
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.49
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.47
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.15
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.14
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.13
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.08
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.76
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.7
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.54
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.41
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.39
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.87
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.84
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	93.87
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	91.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	91.89
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	90.81
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	89.91
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	89.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	87.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	87.49
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	85.87

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-42  Score=366.12  Aligned_cols=426  Identities=54%  Similarity=0.823  Sum_probs=388.9

Q ss_pred             hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      .+.++.+++.+.+++.+.+..|+..++++++....+..+.+++.|++|.|+.+++.+.++.++..|+++|++++.+++..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            35689999999999999999999999999887767778999999999999999987655889999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                      ...+.+.|+++.++.++.+++.+++..|+++|+|++.+++..+..+.+.|++++++.++ .+.+..+++.++|++.+++.
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999998 67778899999999999998


Q ss_pred             CC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHH
Q 037562          397 GK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR  475 (670)
Q Consensus       397 ~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  475 (670)
                      .. +........+++|.++.++.++|++++..+++++.+++...++....+.+.|+++.++.++.+++..++..|+.+++
T Consensus       234 ~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~  313 (503)
T d1wa5b_         234 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG  313 (503)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence            76 45556677899999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHH
Q 037562          476 NIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEA  555 (670)
Q Consensus       476 ~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  555 (670)
                      +++.+.+.....+++.|+++.+..++.++ ++.++..++|+++|++.+++.....+.+.|+++.++..+.+++.+++.+|
T Consensus       314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a  392 (503)
T d1wa5b_         314 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  392 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHH
Confidence            99998888888888999999999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCC--CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhc
Q 037562          556 AWAISNATKFG--THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAE  633 (670)
Q Consensus       556 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g  633 (670)
                      +++|.+++..+  .++....+++.|+++.|+++++..++++...++.++.+++..++.......  ...+.+...++++|
T Consensus       393 ~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~--~~~~~~~~~iee~g  470 (503)
T d1wa5b_         393 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKAG  470 (503)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHTT
T ss_pred             HHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHHHHHHHHCC
Confidence            99999998754  356778899999999999999999999999999999999987654332111  24577899999999


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCccc
Q 037562          634 GLEKIENLQSHDDNGISEKAVEILETYWSSRVI  666 (670)
Q Consensus       634 ~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~  666 (670)
                      |++.|+.|++|++++++++|.++|++||++|+.
T Consensus       471 ~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         471 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             HHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            999999999999999999999999999988863

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-41  Score=352.76  Aligned_cols=417  Identities=46%  Similarity=0.791  Sum_probs=380.8

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      .++..+++.+++++++.+..|+.+++++++...+...+.+++.|++|.|+++|++.+++++|..|+++|.+++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            56899999999999999999999999998766566678899999999999999766547999999999999998888999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCC----hhHHHHHHHHHHh
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENAN----LSMLRTATWTLFN  393 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~----~~~~~~a~~~L~~  393 (670)
                      ..+++.|+++.++.++.+++..+++.|+++|+|++.+++..+..+.+.|+++.++.++.....    ....+.+++++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999954332    2456788999999


Q ss_pred             hhcCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHH
Q 037562          394 FCRGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALR  472 (670)
Q Consensus       394 l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  472 (670)
                      ++... .........++++.+..++.+++++++..+++++++++...+.....+.+.|+++.++.++.+++..++..|+.
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99876 34455566889999999999999999999999999999888878787888999999999999999999999999


Q ss_pred             HHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHH
Q 037562          473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTK  552 (670)
Q Consensus       473 ~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  552 (670)
                      ++++++.+++.....+++.|+++.+..++.+. +++++..|++++++++...++....+.+.|+++.++.++.+++++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999998888888899999999999999998 99999999999999999888888899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh
Q 037562          553 KEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA  632 (670)
Q Consensus       553 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (670)
                      ..|++++.+++..++++....+.+.|+++.|++++++.+++++..+++++.++++..+...       ..+.+...+++.
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-------~~~~~~~~~~~~  404 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEEC  404 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHc
Confidence            9999999999988888888999999999999999999999999999999999998776542       456688999999


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562          633 EGLEKIENLQSHDDNGISEKAVEILETYWS  662 (670)
Q Consensus       633 g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~  662 (670)
                      |+++.|+.|++|+++++++.|.++|++||.
T Consensus       405 ~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         405 GGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999995

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-31  Score=280.52  Aligned_cols=427  Identities=17%  Similarity=0.173  Sum_probs=361.0

Q ss_pred             hhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC
Q 037562          203 TTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGV  282 (670)
Q Consensus       203 ~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~  282 (670)
                      ..+++.+...+.+++.+.+......+.        |++|.++..+++++++++..|+++|.+++.+. ......+.+.|+
T Consensus        74 ~~~~~~a~~~L~~l~~~~~~~~~i~~~--------g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~  144 (529)
T d1jdha_          74 VETARCTAGTLHNLSHHREGLLAIFKS--------GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGG  144 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHT--------THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHC--------CCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCC
Confidence            346777777777777666554433333        67999999999999999999999999998874 455667789999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDL  361 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~  361 (670)
                      ++.|+.++++++ ++++..+++++.+++..++..+..+...|+++.++.++.. ....++..+++++.+++.+ ++.+..
T Consensus       145 i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~  222 (529)
T d1jdha_         145 LQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA  222 (529)
T ss_dssp             HHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred             chHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccch
Confidence            999999999998 8999999999999998888999999999999999999965 5678999999999999864 567888


Q ss_pred             HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562          362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND  441 (670)
Q Consensus       362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  441 (670)
                      +.+.|+++.++.++ .+.+..++..+++++.+++.....  .....++++.+++++.+++..++..++++|++++..++.
T Consensus       223 ~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~~~~~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~  299 (529)
T d1jdha_         223 IVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  299 (529)
T ss_dssp             HHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred             hhhhhhhhhHHHHh-cccchhhhhhhhhHHHhccccccc--hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhH
Confidence            89999999999999 777889999999999999865432  233478999999999999999999999999999988888


Q ss_pred             HHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCch---hhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562          442 KVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDF---QTQCIINCGALPYFLDMLVHNHEESIKKEVSWI  516 (670)
Q Consensus       442 ~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~  516 (670)
                      ....+.+.++++.++..+..  +++.++..|+.++++++.....   ....+...++++.++.++..+.+..++..++++
T Consensus       300 ~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~  379 (529)
T d1jdha_         300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  379 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHH
Confidence            88888899999999998853  5567889999999999976543   344456889999999999887566788899999


Q ss_pred             HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC----------------------hhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037562          517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTE----------------------FDTKKEAAWAISNATKFGTHEQIKHL  574 (670)
Q Consensus       517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l  574 (670)
                      +.+++.. +.....+.+.|+++.+++++.+.+                      .++...++.++..++.  .+..+..+
T Consensus       380 l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~  456 (529)
T d1jdha_         380 IRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVI  456 (529)
T ss_dssp             HHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHH
T ss_pred             Hhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHH
Confidence            9999765 566778889999999999987433                      3566778888888887  56777888


Q ss_pred             HHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 037562          575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV  654 (670)
Q Consensus       575 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~  654 (670)
                      .+.|+++.|++++.+++++++..++.+|.++....+              .++.+.+.|+++.|.+|.++++++++..|.
T Consensus       457 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~--------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~  522 (529)
T d1jdha_         457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEAEGATAPLTELLHSRNEGVATYAA  522 (529)
T ss_dssp             HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHH--------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHH
T ss_pred             HHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChh--------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHH
Confidence            899999999999999999999999999999764432              366889999999999999999999999999


Q ss_pred             HHHHHh
Q 037562          655 EILETY  660 (670)
Q Consensus       655 ~~l~~~  660 (670)
                      .+|.++
T Consensus       523 ~aL~~l  528 (529)
T d1jdha_         523 AVLFRM  528 (529)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-31  Score=281.10  Aligned_cols=367  Identities=24%  Similarity=0.341  Sum_probs=323.6

Q ss_pred             ccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562          238 EILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN  316 (670)
Q Consensus       238 ~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  316 (670)
                      |.+|.|++.+++ .++.++..|+++|.+++++. ......+.+.|+++.++.++.+++ .+++..|+++|++++..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            669999999984 56789999999999998764 556677889999999999999988 899999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562          317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR  396 (670)
Q Consensus       317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  396 (670)
                      +..+.+.|+++.++.++.+.+..++..++|+|.+++.............++++.++.++ .+.+++++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999976554444455567899999988 77889999999999999998


Q ss_pred             CCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHH
Q 037562          397 GKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR  475 (670)
Q Consensus       397 ~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  475 (670)
                      ..+.. ......++++.++.++.+++..++..++.++++++...+.....+.+.|+++.+..+++++++.++..++++++
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            75332 23344789999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC---CHHHHHHHHhcCChHHHHHHhhcCChhHH
Q 037562          476 NIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG---NREQIQAVIDSGLIGPIVNLLQNTEFDTK  552 (670)
Q Consensus       476 ~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  552 (670)
                      |++.+++.....+++.|+++.++..+.+. +.+++.+|+|+++|++.+   .++....+++.|+++.++++++..+.++.
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~  434 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  434 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            99998888888889999999999999999 999999999999999862   35677888999999999999999999999


Q ss_pred             HHHHHHHHHhcCCC----------CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 037562          553 KEAAWAISNATKFG----------THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKV  608 (670)
Q Consensus       553 ~~a~~aL~~l~~~~----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  608 (670)
                      ..++.+|.++...+          .......+.+.|+++.|..+..+++.++...|.+.+..+|..
T Consensus       435 ~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~  500 (503)
T d1wa5b_         435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  500 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            99999999987432          123455677899999999999999999999999999887754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-31  Score=274.24  Aligned_cols=393  Identities=24%  Similarity=0.375  Sum_probs=332.0

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhh--hhccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQS--KLEILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVI  278 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  278 (670)
                      |...+.-+...+++++...+..        +++.  ..|.+|.|++.+++ ++++++..|+++|.+++... .+....++
T Consensus        26 ~~~~~~~a~~~l~~l~s~~~~~--------~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~   96 (434)
T d1q1sc_          26 NLESQLQATQAARKLLSREKQP--------PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVV   96 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHSSSCC--------CHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCc--------hHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhh
Confidence            5566667777777776544332        1111  12679999999975 56789999999999998764 45677889


Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhC
Q 037562          279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS-----VDVRKQTVWALGNVAG  353 (670)
Q Consensus       279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~  353 (670)
                      +.|+++.+++++.+++ +++++.|+++|++++..++..+..+.+.|+++.++.++...+     ......+++++.+++.
T Consensus        97 ~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  175 (434)
T d1q1sc_          97 DGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  175 (434)
T ss_dssp             HTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             hccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhh
Confidence            9999999999999988 899999999999999988899999999999999999997743     3455678899999997


Q ss_pred             CCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC-hhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 037562          354 DSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP-FNQVRPALPVLAQLIRSNDEEVLTDACWAL  432 (670)
Q Consensus       354 ~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L  432 (670)
                      ..+.........++++.+..++ .+.+++++..+++++.+++...+... .....++++.++.++++++..++..++.++
T Consensus       176 ~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l  254 (434)
T d1q1sc_         176 NKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  254 (434)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             cccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhh
Confidence            6655444444556788888888 77888999999999999998753222 223368999999999999999999999999


Q ss_pred             HHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHH
Q 037562          433 SYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKE  512 (670)
Q Consensus       433 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~  512 (670)
                      .+++...+.....+.+.|+++.+..++++++++++..|++++++++.........+.+.|+++.++.++.+. +++++..
T Consensus       255 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~  333 (434)
T d1q1sc_         255 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKE  333 (434)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHH
T ss_pred             hhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHH
Confidence            999988888888899999999999999999999999999999999998888888888999999999999999 9999999


Q ss_pred             HHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC-----CCHHHHHHHHHcCCcHHHHhh
Q 037562          513 VSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF-----GTHEQIKHLVREGCVKPLCDL  586 (670)
Q Consensus       513 a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~i~~L~~l  586 (670)
                      |+|+++|++. .+++....+.+.|+++.|++++++++++++..++.+|.++...     ..+.....+.+.|+++.|..+
T Consensus       334 a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L  413 (434)
T d1q1sc_         334 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL  413 (434)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHH
Confidence            9999999987 4677788899999999999999999999999999999998642     133455667789999999999


Q ss_pred             ccCCChHHHHHHHHHHHHHH
Q 037562          587 LLCADPKIVTVCLEGLENIL  606 (670)
Q Consensus       587 l~~~~~~v~~~a~~~l~~l~  606 (670)
                      .++++++++..|.+.+.++|
T Consensus       414 ~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         414 QRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HTCSSHHHHHHHHHHHHHHC
T ss_pred             HcCCCHHHHHHHHHHHHHHh
Confidence            99999999999999998765

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.4e-31  Score=280.55  Aligned_cols=434  Identities=17%  Similarity=0.175  Sum_probs=357.0

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQS  280 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  280 (670)
                      +..+++.+...+.++......+..+...       .+.++.+++.|. .++.+++..|+.+|.+++.+  .+....+++.
T Consensus        30 ~~~v~~~A~~~l~~l~~~~~~~~~~~~~-------~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~  100 (529)
T d1jdha_          30 DQVVVNKAAVMVHQLSKKEASRHAIMRS-------PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKS  100 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHTC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHh-------hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHC
Confidence            3457777777777766544333322222       256899999997 56789999999999999754  6777889999


Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      |+++.|+.+|++++ ++++..|+++|.+++.+++..+..+.+.|+++.|+.+++++++.++..++++|.+++..++..+.
T Consensus       101 g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  179 (529)
T d1jdha_         101 GGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             THHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH
Confidence            99999999999998 89999999999999997888889999999999999999999999999999999999988888889


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                      .+.+.|++++++.++.......++..+++++.+++............++++.++.++.+++..++..+++++.+++....
T Consensus       180 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc
Confidence            99999999999999977777889999999999999876555556668999999999999999999999999999985543


Q ss_pred             HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc-CCchhHHHHHHHHHHH
Q 037562          441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH-NHEESIKKEVSWIISN  519 (670)
Q Consensus       441 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~~v~~~a~~~L~~  519 (670)
                      ..   ....|+++.++.++.+++..++..|+++|++++.+++.....+.+.++++.++..+.. ...+.++..|++++.+
T Consensus       260 ~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~  336 (529)
T d1jdha_         260 KQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  336 (529)
T ss_dssp             TC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhc
Confidence            21   1223788999999999999999999999999999888888888899999999998853 2267899999999999


Q ss_pred             hhcCC---HHHHHHHHhcCChHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh---
Q 037562          520 ITCGN---REQIQAVIDSGLIGPIVNLLQNTE-FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP---  592 (670)
Q Consensus       520 l~~~~---~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~---  592 (670)
                      ++...   +.....+...++++.++.++..++ ..++..+++++.+++..  ++....+.+.|+++.|++++.+.+.   
T Consensus       337 l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~  414 (529)
T d1jdha_         337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQ  414 (529)
T ss_dssp             HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred             ccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHH
Confidence            98643   234455667899999999998554 57888999999999884  4667788999999999999965544   


Q ss_pred             -------------------HHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562          593 -------------------KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA  653 (670)
Q Consensus       593 -------------------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a  653 (670)
                                         +++..+..++..+.....              .+..+.+.|+++.|.++..+++++++..|
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~--------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a  480 (529)
T d1jdha_         415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVA  480 (529)
T ss_dssp             -----------CBTTBCHHHHHHHHHHHHHHHTTSHH--------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHH--------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHH
Confidence                               344555555555442221              25678899999999999999999999999


Q ss_pred             HHHHHHhcCCc
Q 037562          654 VEILETYWSSR  664 (670)
Q Consensus       654 ~~~l~~~~~~~  664 (670)
                      ..++..+..++
T Consensus       481 ~~aL~~L~~~~  491 (529)
T d1jdha_         481 AGVLCELAQDK  491 (529)
T ss_dssp             HHHHHHHTTSH
T ss_pred             HHHHHHHhcCh
Confidence            99998876544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.4e-25  Score=228.96  Aligned_cols=369  Identities=18%  Similarity=0.216  Sum_probs=282.7

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562          281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD  360 (670)
Q Consensus       281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  360 (670)
                      ..+|.|+++|++++ ++++..|+++|++++.++++.+..+.+.|+++.|+++|++++++++..|+++|++++.++++.+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998999999999999999999999999999999999999999999899999


Q ss_pred             HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh----------------ccCChhH
Q 037562          361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI----------------RSNDEEV  424 (670)
Q Consensus       361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL----------------~~~~~~v  424 (670)
                      .+.+.|+++.++.++....++.++..+++++.+++......... ...+++.++..+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL-IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH-HHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHH-HhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999999978888899999999999999875433333 334444443332                3457889


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC------CccchhHHHHHHHHhh--------------------
Q 037562          425 LTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS------SSSVLTPALRTIRNIV--------------------  478 (670)
Q Consensus       425 ~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~v~~~a~~~L~~l~--------------------  478 (670)
                      +..+++++.+++...+.........|+++.++.++++.      .......+...+....                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999977665555555567888888887531      1111122221111110                    


Q ss_pred             ------------------------------cCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH--
Q 037562          479 ------------------------------KGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE--  526 (670)
Q Consensus       479 ------------------------------~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~--  526 (670)
                                                    .........+...++++.++.++....++.++..+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          001111122233355677888877665788999999999999864321  


Q ss_pred             ---HHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC------CChHHHHH
Q 037562          527 ---QIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC------ADPKIVTV  597 (670)
Q Consensus       527 ---~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~  597 (670)
                         ....+.+.++++.|++++.+++++++..+++++.+++..  ++....+ ..++++.++.++..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               233445789999999999999999999999999999984  3444444 45689999998843      34578999


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCcccc
Q 037562          598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS-HDDNGISEKAVEILETYWSSRVIG  667 (670)
Q Consensus       598 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~~l~~~~~~~~~~  667 (670)
                      ++.++.++......             .++.+.+.|+++.|.++.. ++++.+++.|..+|.++|.+.+..
T Consensus       397 a~~~L~~l~~~~~~-------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~  454 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHhcCCHH-------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence            99999998854322             3667889999999999865 567889999999999999888764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=217.29  Aligned_cols=362  Identities=16%  Similarity=0.181  Sum_probs=270.0

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .||.+++.|++++++++..|+++|.+++.++ ++....+.+.|++|.|+++|++++ +++|..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            5899999999999999999999999997654 677899999999999999999988 99999999999999988899999


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh---------------cccCChh
Q 037562          319 VVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL---------------NENANLS  382 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l---------------~~~~~~~  382 (670)
                      .+.+.|+++.++.++.. .++.++..|+++|.+++..... +...... +++.++..+               ....+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999998865 7889999999999999976554 3333333 345554443               2345678


Q ss_pred             HHHHHHHHHHhhhcCCCCCChhh-hhhhHHHHHHhhccC------ChhHHHHHHHHHHHhccC-----------------
Q 037562          383 MLRTATWTLFNFCRGKPQPPFNQ-VRPALPVLAQLIRSN------DEEVLTDACWALSYLSDG-----------------  438 (670)
Q Consensus       383 ~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~------~~~v~~~al~~L~~l~~~-----------------  438 (670)
                      ++..+++++.+++.......... ..++++.++.++++.      .......+...+......                 
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            89999999999987754333222 256788888877532      111111111111111000                 


Q ss_pred             ---------------------------------ChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCch-
Q 037562          439 ---------------------------------TNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDF-  483 (670)
Q Consensus       439 ---------------------------------~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-  483 (670)
                                                       .......+...++++.++.++.+ .++.++..+.+++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                             00000111222455666666654 4556788889999999865432 


Q ss_pred             ----hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC------ChhHHH
Q 037562          484 ----QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT------EFDTKK  553 (670)
Q Consensus       484 ----~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~  553 (670)
                          ....+.+.++++.++.++.+. ++.++..+++++++++.. +.....+ ..++++.++.++...      +.+++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHH
Confidence                233345789999999999999 999999999999999865 3444444 446899999988632      357999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHh
Q 037562          554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKV  608 (670)
Q Consensus       554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~  608 (670)
                      .|+.+|.+++.. +++..+.+.+.|+++.|+.++++. ++.++..|..+|.+++.+
T Consensus       396 ~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            999999999976 667888899999999999999764 678999999999998744

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.2e-18  Score=164.66  Aligned_cols=197  Identities=16%  Similarity=0.170  Sum_probs=176.2

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHH
Q 037562          292 RQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIP  370 (670)
Q Consensus       292 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~  370 (670)
                      ..+ .+.+..|+.+|.+++. +.+++..+...|+++.++. ++.+++++++..|+++|++++.+++..+..+.+.|+++.
T Consensus        28 ~~~-~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          28 AAD-QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHH-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             CCC-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            344 6889999999999997 7888889999999999886 788899999999999999999999999999999999999


Q ss_pred             HHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc
Q 037562          371 LLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA  449 (670)
Q Consensus       371 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  449 (670)
                      ++.++.+..++.++..+++++.+++.+.+.. ......++++.++.+++++++.++..+++++++++..++.....+.+.
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            9999977788899999999999999887443 344458899999999999999999999999999998888888889999


Q ss_pred             CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh
Q 037562          450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIIN  490 (670)
Q Consensus       450 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~  490 (670)
                      |+++.++.++.++++.++..|+++|++++...+.....+..
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999999999999887776665543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.4e-17  Score=175.45  Aligned_cols=380  Identities=13%  Similarity=0.159  Sum_probs=279.3

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .+|.+.+.++++++.++..|+.++..++...  +.  ......+++.+..++.+++ ..+|..++.+|+.++..   ...
T Consensus       204 l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~--~~--~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~---~~~  275 (588)
T d1b3ua_         204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKA---VGP  275 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHH---HCH
T ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHhhccC--CH--HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHH---hhh
Confidence            3566777778889999999999999987653  11  2223347888999998888 79999999999998752   112


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP-RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ......+++.+..++.++++++|..|+.+++.++..-. ..+....-...++.+...+ .+.++.++..++.++..++..
T Consensus       276 ~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~  354 (588)
T d1b3ua_         276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPI  354 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHH
T ss_pred             hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhc
Confidence            23334678999999999999999999999999884322 2222222234566666666 778889999998888887643


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                      -  .........+|.+..++++++++++..++.++..+......  . .....+++.+...+.+.++.+|..++.+++.+
T Consensus       355 ~--~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l  429 (588)
T d1b3ua_         355 L--GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL  429 (588)
T ss_dssp             H--CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             c--chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            2  11233466788999999999999999998888776632211  1 11225678888999999999999999999998


Q ss_pred             hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH
Q 037562          478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA  556 (670)
Q Consensus       478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  556 (670)
                      +.....   ..+...+.+.+..++.+. ...+|..|+.+++.++.. .++    .....+++.+.+++.+++..+|..++
T Consensus       430 ~~~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~  501 (588)
T d1b3ua_         430 AGQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTL  501 (588)
T ss_dssp             HHHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHH
T ss_pred             HHHcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            752111   112233567788888888 899999999999999762 222    12345788999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562          557 WAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE  636 (670)
Q Consensus       557 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  636 (670)
                      .++..+......    .......++.+..+++++.++||..+++++..+........           +     +....+
T Consensus       502 ~~l~~l~~~~~~----~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~-----------~-----~~~i~~  561 (588)
T d1b3ua_         502 FCINVLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST-----------L-----QSEVKP  561 (588)
T ss_dssp             HHHHHHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH-----------H-----HHHHHH
T ss_pred             HHHHHHHHHcCh----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh-----------H-----HHHHHH
Confidence            999998763222    22344589999999999999999999999999865433211           1     222367


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHh
Q 037562          637 KIENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       637 ~l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      .+..|+++++.+|+..|.++++.+
T Consensus       562 ~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         562 ILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHH
Confidence            788999999999999999999865

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-17  Score=158.97  Aligned_cols=191  Identities=15%  Similarity=0.126  Sum_probs=170.9

Q ss_pred             cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH-hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHH
Q 037562          419 SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE-LLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYF  497 (670)
Q Consensus       419 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L  497 (670)
                      ..+.+.+..|+.+|.+++.. .+....+...|+++.++. ++.+++++++..|+++|++++.+++.....+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            44678899999999999965 445666888899998875 7888999999999999999999888888888899999999


Q ss_pred             HHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 037562          498 LDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE  577 (670)
Q Consensus       498 ~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  577 (670)
                      +.++.+..++.++..|++++++++.+++.....+.+.|+++.|+.++.+++..++..++++|.+++.. +++....+.+.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99997655889999999999999999999899999999999999999999999999999999999876 56778888999


Q ss_pred             CCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          578 GCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       578 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                      |+++.|+.++++++++++..++++|.++......
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~  219 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  219 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence            9999999999999999999999999999865443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.4e-15  Score=156.96  Aligned_cols=381  Identities=10%  Similarity=0.073  Sum_probs=280.9

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      .++.+.+.++++++.++..|+..+..++....    .......+++.+..++++++ +.+|..|+.++..++...+..  
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~--  237 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH--
Confidence            35667777788999999999999999987631    23334567888888888888 899999999999987522221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK  398 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  398 (670)
                       .....+++.+..++.+++..+|..++.+|++++...+   ........++.+..++ .+.+.+++..++.++..++..-
T Consensus       238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHH
Confidence             1122368889999999999999999999999873221   1222334577777777 7788999999999999998765


Q ss_pred             CCCCh--hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562          399 PQPPF--NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN  476 (670)
Q Consensus       399 ~~~~~--~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  476 (670)
                      .....  .....++|.+...+.+.++.++..++.++..++..-..  . .....+++.+...+.++++.++..++.++..
T Consensus       313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            33322  23467888999999999999999998888877632111  1 1222578889999999999999999988887


Q ss_pred             hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHH
Q 037562          477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEA  555 (670)
Q Consensus       477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  555 (670)
                      +......  .. +...+++.+...+.+. ++.+|..++.++..++.. ..+.    ....+.+.+..++.++...||..|
T Consensus       390 ~~~~~~~--~~-~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A  461 (588)
T d1b3ua_         390 VNEVIGI--RQ-LSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCH--HH-HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHhhcch--hh-hhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHH
Confidence            7652211  11 1224678888888888 999999999999988652 1111    122345667778888899999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchH
Q 037562          556 AWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGL  635 (670)
Q Consensus       556 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  635 (670)
                      +.+++.++....++.    ....+++.+.+++++++..+|..++.++..+.......               .+ ....+
T Consensus       462 ~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~---------------~~-~~~il  521 (588)
T d1b3ua_         462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---------------IT-TKHML  521 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH---------------HH-HHHTH
T ss_pred             HHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH---------------HH-HHHHH
Confidence            999999987433332    23347889999999999999999999999887654321               11 23357


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562          636 EKIENLQSHDDNGISEKAVEILETYWS  662 (670)
Q Consensus       636 ~~l~~L~~~~~~~v~~~a~~~l~~~~~  662 (670)
                      +.+.++..++.++||..+.+++..+++
T Consensus       522 p~ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         522 PTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            888888899999999999988887754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.2e-11  Score=136.88  Aligned_cols=394  Identities=11%  Similarity=0.166  Sum_probs=236.3

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-hhHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS-ENTK  318 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~  318 (670)
                      ++.+.+.+.++++..+..|+.++..++.+. .+.....+ ..+++.++..+++++ +.+|..|+++++.++.... ....
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            455566677888999999999999886542 11111111 225778888888888 9999999999999875211 1112


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh---
Q 037562          319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP-RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF---  394 (670)
Q Consensus       319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l---  394 (670)
                      . .-..+++.++..+.++++.++..|+++|.+++.... .....+-  ..++.++..+ ...+...+..+..++..+   
T Consensus       474 ~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~--~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         474 T-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAF-SKYQHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             H-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHH--HHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHH
T ss_pred             h-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHh
Confidence            2 224678889999999999999999999999873211 1111100  1233333333 222222222222222221   


Q ss_pred             ------------------------------------------hcCCCCCChhhhhhhHHHHHHhhc--------------
Q 037562          395 ------------------------------------------CRGKPQPPFNQVRPALPVLAQLIR--------------  418 (670)
Q Consensus       395 ------------------------------------------~~~~~~~~~~~~~~~i~~L~~lL~--------------  418 (670)
                                                                +..............++.+...+.              
T Consensus       550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                                                      111100000001111122222111              


Q ss_pred             ---cCChhHHHHHHHHHHHhccCChHHHHH-HHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCCh
Q 037562          419 ---SNDEEVLTDACWALSYLSDGTNDKVQA-VIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGAL  494 (670)
Q Consensus       419 ---~~~~~v~~~al~~L~~l~~~~~~~~~~-~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~  494 (670)
                         ..+.++...++.++..++..-...... +....+++.+...+++.++.++..|..+++.++..........++ .++
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~  708 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFM  708 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence               123455666666666655322222222 333467888889999999999999999999998765544433332 367


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC--hhHHHHHHHHHHHhcCCCCHHHHH
Q 037562          495 PYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTE--FDTKKEAAWAISNATKFGTHEQIK  572 (670)
Q Consensus       495 ~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~  572 (670)
                      +.+...+++. ...++..|+|+++.++....+.....+. .+++.|+.++++++  ..++.+++.+++.++.. .++...
T Consensus       709 ~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~-~p~~~~  785 (888)
T d1qbkb_         709 PILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-CPQEVA  785 (888)
T ss_dssp             HHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-CHHHHG
T ss_pred             HHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH-CHHHHH
Confidence            7788888888 8899999999999998743333322222 47888899998654  45899999999999886 444432


Q ss_pred             HHHHcCCcHHHHhhccC-CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHH
Q 037562          573 HLVREGCVKPLCDLLLC-ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISE  651 (670)
Q Consensus       573 ~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~  651 (670)
                      ..++ .+++.++..+.. .|.+-+..+...+..++...+....        +.+..+      ++.+... ....++++.
T Consensus       786 ~~l~-~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~--------~~l~~~------~~~i~~~-~~~~~~~~~  849 (888)
T d1qbkb_         786 PMLQ-QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI--------QDFIFF------CDAVASW-INPKDDLRD  849 (888)
T ss_dssp             GGGG-GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG--------GGHHHH------HHHHTTC-SSCCHHHHH
T ss_pred             hhHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH--------HHHHHH------HHHHHhc-CCCCHHHHH
Confidence            2222 256666666644 5666788899999999887654331        112221      2233332 234577888


Q ss_pred             HHHHHHHHh
Q 037562          652 KAVEILETY  660 (670)
Q Consensus       652 ~a~~~l~~~  660 (670)
                      ...++|..|
T Consensus       850 ~~~~~l~~~  858 (888)
T d1qbkb_         850 MFCKILHGF  858 (888)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887765

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=9.3e-11  Score=111.79  Aligned_cols=256  Identities=15%  Similarity=0.112  Sum_probs=196.2

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562          280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR  359 (670)
Q Consensus       280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  359 (670)
                      ....+.|+++|++++ +.+|..|+.+|+.+..  +         .+++.++.+++++++.++..|+.+|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            345778899999999 9999999999998864  2         3579999999999999999999999998644332 1


Q ss_pred             HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562          360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT  439 (670)
Q Consensus       360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~  439 (670)
                      ..     .++.++..+.++.++.++..++.+|.+++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            11     245566666688899999999999999886542    2234577888888888999999999988887642  


Q ss_pred             hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                               ...++.+..++...+..++..+..++..+......         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     25667788888888888888888888877654432         344566777777 89999999999887


Q ss_pred             hhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC-CChHHHHHH
Q 037562          520 ITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC-ADPKIVTVC  598 (670)
Q Consensus       520 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a  598 (670)
                      +..           ...++.|++.+.+  +.++..|+.+|+.+...            ++++.|..++.+ ++.+++..|
T Consensus       215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~~------------~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGDK------------TLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCCG------------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCCH------------HHHHHHHHHHccCCCHHHHHHH
Confidence            632           2367788888764  56899999999998642            367888887755 578899999


Q ss_pred             HHHHH
Q 037562          599 LEGLE  603 (670)
Q Consensus       599 ~~~l~  603 (670)
                      +.+|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88874

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-10  Score=135.38  Aligned_cols=407  Identities=13%  Similarity=0.103  Sum_probs=262.6

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562          240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV  319 (670)
Q Consensus       240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  319 (670)
                      +..+++.+++.|+++|+.|+.-|.+.........-.. ....+++.++++|++++ ++||..|+.+|+.++..-++..  
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~-~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~--   80 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDD-SERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQ--   80 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTT-HHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHH--
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhh--
Confidence            6778889999999999999999988765432111111 12236888999999988 9999999999999987443322  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch------hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh
Q 037562          320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR------CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN  393 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~  393 (670)
                       + ..+++.|+..+.+++...+..+..+|..+...-+.      ....+ ....++.+...+.+..+..++..++.++..
T Consensus        81 -~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          81 -V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             -H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             -H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence             1 13577888888888888898888888776532211      11111 111344555555566677888999999998


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-CCCccchhHHHH
Q 037562          394 FCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-HSSSSVLTPALR  472 (670)
Q Consensus       394 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~  472 (670)
                      +....+.........+++.++..+.+++..+|..|+.+++.++...+..   .. ..+++.++..+. +.+..++..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHH
Confidence            8876554444445678888999999999999999999999998654432   11 134555555553 456678888899


Q ss_pred             HHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH----HHHHHHh----c----------
Q 037562          473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE----QIQAVID----S----------  534 (670)
Q Consensus       473 ~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~----~~~~l~~----~----------  534 (670)
                      +++.++...+...... -..+++.+...+.+. ++++|+.+..++..++...+.    ....++.    .          
T Consensus       234 ~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~  311 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD  311 (1207)
T ss_dssp             HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence            9999987554432211 235788999999988 899999999999888763322    1111110    0          


Q ss_pred             ------------------CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHH
Q 037562          535 ------------------GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVT  596 (670)
Q Consensus       535 ------------------~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  596 (670)
                                        ...+.......+....+|..|+.+|..+.... ++....+ -..+++.++..+.+.++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~-~~~l~~~-~~~~~~~L~~~l~d~~~~vr~  389 (1207)
T d1u6gc_         312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR-HEMLPEF-YKTVSPALISRFKEREENVKA  389 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTC-CTTHHHH-HTTTHHHHHSTTSCSSSHHHH
T ss_pred             hHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHH-HHHHHHH-HHHHHHHHHHHhcCCchHHHH
Confidence                              00011111122345689999999999998753 3333332 345889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCCC---CCCccHHHHHHHH--hchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          597 VCLEGLENILKVGVAEMNTGTA---VGDFNQYAQLVEE--AEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       597 ~a~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~--~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      .+..++..++............   ..........+..  ...++.+.....+.+..++..+..++..+.
T Consensus       390 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~  459 (1207)
T d1u6gc_         390 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV  459 (1207)
T ss_dssp             HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            9999999887653321110000   0000000111111  123555666677888888888888777653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-10  Score=130.55  Aligned_cols=381  Identities=14%  Similarity=0.117  Sum_probs=232.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 037562          253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKL  332 (670)
Q Consensus       253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~l  332 (670)
                      .++..|..+|..++.....+....     +++.+.+.+.+++ +..|+.|+.+++.++.+..+.....+. .+++.++..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~~-----~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLPH-----ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHHH-----HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHHH-----HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHh
Confidence            466677777766654432222211     3455566777788 799999999999999865543332222 357888889


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHH
Q 037562          333 LASPSVDVRKQTVWALGNVAGDSP-RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALP  411 (670)
Q Consensus       333 L~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~  411 (670)
                      ++++++.+|..|+|+|+.++.... ...+.. -...++.++..+ .+.++.++..|+++|.+++.............+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            999999999999999999874211 111111 224577788877 66778999999999999997654444455677888


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCChHH--HHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchh---
Q 037562          412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDK--VQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQ---  484 (670)
Q Consensus       412 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~---  484 (670)
                      .++..+...+...+..+..+++.++......  ...+.+ .+++.+......  .+......++.+++.++......   
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            8889888877777777777776665321100  011111 233444444332  23334555666776665432211   


Q ss_pred             -hHHHHhCCChHHHHHh--------hc----cCCchhHHHHHHHHHHHhhcCCHHHH-HHHHhcCChHHHHHHhhcCChh
Q 037562          485 -TQCIINCGALPYFLDM--------LV----HNHEESIKKEVSWIISNITCGNREQI-QAVIDSGLIGPIVNLLQNTEFD  550 (670)
Q Consensus       485 -~~~l~~~~~~~~L~~~--------l~----~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~  550 (670)
                       ...+++ ..+..+...        ..    ...+..+...+..+++.++....... ..+....+++.+...+.+.+++
T Consensus       602 ~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  680 (888)
T d1qbkb_         602 YCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  680 (888)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence             111111 011111111        11    11145566667777777765222222 2333456788888999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHH
Q 037562          551 TKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVE  630 (670)
Q Consensus       551 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  630 (670)
                      ++..|..+++.++....+....++-  ..++.+...+++++..++..++++++.+.......-         .++...+ 
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~---------~py~~~i-  748 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM---------QPYIPMV-  748 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGG---------GGGSHHH-
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHh---------hhhHHHH-
Confidence            9999999999887653332222221  256778888888899999999999999887654322         1233232 


Q ss_pred             HhchHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 037562          631 EAEGLEKIENLQSHD--DNGISEKAVEILETY  660 (670)
Q Consensus       631 ~~g~~~~l~~L~~~~--~~~v~~~a~~~l~~~  660 (670)
                          ++.|..+.+++  +..+++.+..++.++
T Consensus       749 ----l~~L~~il~~~~~~~~v~~n~~~~lgrl  776 (888)
T d1qbkb_         749 ----LHQLVEIINRPNTPKTLLENTAITIGRL  776 (888)
T ss_dssp             ----HHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence                45555554432  344777676666544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=5.4e-10  Score=106.32  Aligned_cols=253  Identities=13%  Similarity=0.106  Sum_probs=188.4

Q ss_pred             cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562          239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK  318 (670)
Q Consensus       239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  318 (670)
                      ....|++.|.++++.++..|+.+|..+...            ..++.+++++++++ +.+|..|+.+|+.+.... ....
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~------------~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~-~~~~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCED   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCCH------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-cccc
Confidence            467899999999999999999999877321            25789999999999 899999999999987522 2221


Q ss_pred             HHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562          319 VVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG  397 (670)
Q Consensus       319 ~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  397 (670)
                      ..     ++.+.. +++++++.++..++.+|++++...+.....     .++.+...+ .+.++.++..++.++..... 
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence            11     233333 567899999999999999998554432222     355566666 67788899888888876543 


Q ss_pred             CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562          398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI  477 (670)
Q Consensus       398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  477 (670)
                               ...++.+..++...+..++..+..++.........         ..+.+...+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence                     34567888889888999999988888887655442         334566777888888999998888765


Q ss_pred             hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc-CChhHHHHHH
Q 037562          478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN-TEFDTKKEAA  556 (670)
Q Consensus       478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~  556 (670)
                      ..           ...++.|+..+.++   .+|..|+++|+.+..           .+.++.|..++.+ ++.+++..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHH
Confidence            32           23577888888654   588999999998842           2477888888875 5789999998


Q ss_pred             HHHH
Q 037562          557 WAIS  560 (670)
Q Consensus       557 ~aL~  560 (670)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5e-12  Score=120.87  Aligned_cols=166  Identities=19%  Similarity=0.115  Sum_probs=85.4

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      .|++|++++|.--..........+++|++|.+.+|.--...+.....+++|++|++++|.++++........++|+|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            67777777764222211212345677777777777421122222334567777777777776643222334566777777


Q ss_pred             cccccccccee-----cccc----------c---cccc----cccccccccccccccccccccccccCCcccCCCCccEE
Q 037562          103 EIESCDKITEI-----VLVD----------D---VVAQ----DEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEIL  160 (670)
Q Consensus       103 ~i~~c~~l~~~-----~~~~----------~---~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L  160 (670)
                      ++++|.++..-     +...          +   ....    .-...+|+|++|++++|+.++.-... ....+|+|++|
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~-~l~~~~~L~~L  205 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHL  205 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh-hhcccCcCCEE
Confidence            77777655321     0000          0   0000    00123466777777777666543221 13346677777


Q ss_pred             eEecCCCccc-cccCCcCCCCccceeeeec
Q 037562          161 VVNYCPNMKI-FSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       161 ~i~~C~~l~~-~p~~~~~~~~L~~l~i~~~  189 (670)
                      ++.+|+++.. -.......|+|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7777766541 1112234566777766543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.4e-09  Score=122.04  Aligned_cols=424  Identities=13%  Similarity=0.118  Sum_probs=249.6

Q ss_pred             hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC
Q 037562          202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG  281 (670)
Q Consensus       202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g  281 (670)
                      ...+|.+++..+...+++..-.  ....     ..-..++.+++.+.+.++++|..|+.+|..++.........     .
T Consensus        16 D~d~R~ma~~dl~~~l~~~~~~--~~~~-----~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~-----~   83 (1207)
T d1u6gc_          16 DKDFRFMATNDLMTELQKDSIK--LDDD-----SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----T   83 (1207)
T ss_dssp             SHHHHHHHHHHHHHHTSSSCCS--CCTT-----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----H
T ss_pred             CHhHHHHHHHHHHHHHhhcccc--cChH-----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHH-----H
Confidence            3468888888877777644321  2211     11234788899999999999999999999887653221111     1


Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC------------------------------hhhHHHHH--------h-
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGT------------------------------SENTKVVI--------D-  322 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~------------------------------~~~~~~i~--------~-  322 (670)
                      +++.|+..+.+++ ...+..+..+|..+...-                              ...+...+        . 
T Consensus        84 l~~~L~~~l~~~~-~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~  162 (1207)
T d1u6gc_          84 IVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ  162 (1207)
T ss_dssp             HHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCc-hhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            3445555554444 344554444443322100                              00000000        0 


Q ss_pred             --------CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562          323 --------HGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF  394 (670)
Q Consensus       323 --------~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  394 (670)
                              ..+++.++..+.+++..+|..|+.+|+.++...+..   . -...+..++..+..+.+...++.++.++..+
T Consensus       163 g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l  238 (1207)
T d1u6gc_         163 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI  238 (1207)
T ss_dssp             CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence                    123455666677788889999999999887544321   1 1124677777776666666777777888888


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH-----------------
Q 037562          395 CRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE-----------------  457 (670)
Q Consensus       395 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~-----------------  457 (670)
                      +...+.........++|.+...+.+++++++..++.++..++...+........ .++..+..                 
T Consensus       239 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~  317 (1207)
T d1u6gc_         239 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDE  317 (1207)
T ss_dssp             HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC------------
T ss_pred             HHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHH
Confidence            765543323334678899999999999999999999998887543321111110 11111111                 


Q ss_pred             --------------------hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHH
Q 037562          458 --------------------LLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWII  517 (670)
Q Consensus       458 --------------------lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L  517 (670)
                                          ...+..+.+|..|+.++..+....++...... ..+++.++..+.+. ++.+|..+..++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l  395 (1207)
T d1u6gc_         318 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAY  395 (1207)
T ss_dssp             ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHH
T ss_pred             hhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence                                12234567899999999999887665554443 35889999999888 899999999988


Q ss_pred             HHhhcCC---H-------------HHHHHHH--hcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 037562          518 SNITCGN---R-------------EQIQAVI--DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC  579 (670)
Q Consensus       518 ~~l~~~~---~-------------~~~~~l~--~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~  579 (670)
                      ..+....   .             .....+.  -..+++.+...+.+.+..++..+..++..+..........++.  ..
T Consensus       396 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~  473 (1207)
T d1u6gc_         396 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VL  473 (1207)
T ss_dssp             HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HH
T ss_pred             HHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hh
Confidence            8775310   0             0001111  1234666777777888999999999998886532111111111  13


Q ss_pred             cHHHHhhccCC--ChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 037562          580 VKPLCDLLLCA--DPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL  657 (670)
Q Consensus       580 i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l  657 (670)
                      ++.+...+.+.  ...++..++.++..++.......           +...+  ....+.+.....+....++..|..++
T Consensus       474 ~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~-----------~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~  540 (1207)
T d1u6gc_         474 VPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV-----------FHPHV--QALVPPVVACVGDPFYKITSEALLVT  540 (1207)
T ss_dssp             HHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHH-----------HHHHH--HhhhhhHHHHHccccHHHHHHHHHHH
Confidence            45555656543  44677788888888876533221           11111  12234444555566666666665554


Q ss_pred             HHh
Q 037562          658 ETY  660 (670)
Q Consensus       658 ~~~  660 (670)
                      ..+
T Consensus       541 ~~l  543 (1207)
T d1u6gc_         541 QQL  543 (1207)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.8e-09  Score=109.24  Aligned_cols=389  Identities=10%  Similarity=0.049  Sum_probs=245.4

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHH-
Q 037562          241 PAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENTK-  318 (670)
Q Consensus       241 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~-  318 (670)
                      -.+++.+.++|.+.+.+|-..|..+...+ .        .+.+..+...+.+++ ...+|..|+..|.+.......... 
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~-~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~   73 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVEN-L--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   73 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcC-c--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence            45677778999999999999998886531 0        124667777775543 267999999888887753322111 


Q ss_pred             HH----------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-CChhHHHHH
Q 037562          319 VV----------IDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN-ANLSMLRTA  387 (670)
Q Consensus       319 ~i----------~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~-~~~~~~~~a  387 (670)
                      ..          ....+.+.++..+.++++.+ ..++.+++.++......   -.-.+.++.++..+.+. .+...+..+
T Consensus        74 ~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~-~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          74 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHhhhhccCCHHHHHHHHHHHHhccCCCcHHH-HHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence            11          11123455667666655433 34455555554211000   00113577777777433 345667788


Q ss_pred             HHHHHhhhcCC-CCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCChHHHH-HHHHcCCHHHHHHhcCCCC
Q 037562          388 TWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTNDKVQ-AVIEAGVYPRLVELLGHSS  463 (670)
Q Consensus       388 ~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~  463 (670)
                      +.++..++... +.........+++.++..+.++  +..++..++.++..+......... ........+.+...+.+++
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            88888887654 2333344467788888888754  578999999999998865443221 1222345677888888899


Q ss_pred             ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH------------
Q 037562          464 SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV------------  531 (670)
Q Consensus       464 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l------------  531 (670)
                      ++++..++.++..++...+......+.....+.+.....+. ++.++..|+..+..++..........            
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  308 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  308 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence            99999999999999876554433223333444555666666 88899999988888764211111000            


Q ss_pred             --------HhcCChHHHHHHhh-------cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHH
Q 037562          532 --------IDSGLIGPIVNLLQ-------NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVT  596 (670)
Q Consensus       532 --------~~~~~i~~L~~ll~-------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  596 (670)
                              .-..+++.+...+.       +.+..++..|..++..++.....+....     +++.+.+.++++++.+|.
T Consensus       309 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~  383 (458)
T d1ibrb_         309 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRD  383 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHH
Confidence                    01123344444443       2234688889999988876543333333     466788888999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          597 VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       597 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      .++.+++.+........-        ..+.     ...++.|....+++++.||..|.+++.++.
T Consensus       384 aal~~l~~i~~~~~~~~~--------~~~l-----~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         384 AAVMAFGCILEGPEPSQL--------KPLV-----IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHHHHTSSSSCTTTT--------CTTT-----TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHhHH--------HHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999887643221110        0011     123677778889999999999999998773

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-11  Score=116.59  Aligned_cols=137  Identities=15%  Similarity=0.108  Sum_probs=83.7

Q ss_pred             ccccEEEeccCcCccccccc-ccccCCCCcEEEEecCCCCcccc--CCC-ccccccceeeecccc-cccccccchhhhcc
Q 037562           22 MEVKISEAYNCYRLENILIE-ESSVMNNLVILCVHCCDHLINLV--PSS-TSFQNLTNLVVSHCK-RLKIVLTSSIAKTL   96 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l~~~~--~~~-~~~~~L~~L~i~~c~-~l~~l~~~~~~~~l   96 (670)
                      .+|++|++++|.++++.... ....+++|++|++++|.++....  ... ...++|++|++++|. ++..-.......++
T Consensus        95 ~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~  174 (284)
T d2astb2          95 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC  174 (284)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred             CCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccc
Confidence            36666666666666543211 11346677777777776653211  101 123567777777763 34332212334567


Q ss_pred             cccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562           97 VRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP  166 (670)
Q Consensus        97 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~  166 (670)
                      |+|++|++++|..++.-.       ......+|+|++|.+.+|++++.-... ....+|+|+.|++.+|-
T Consensus       175 ~~L~~L~L~~~~~itd~~-------~~~l~~~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~~  236 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDC-------FQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGIV  236 (284)
T ss_dssp             TTCSEEECTTCTTCCGGG-------GGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTSS
T ss_pred             ccccccccccccCCCchh-------hhhhcccCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCCC
Confidence            888888888887665321       123345899999999999998765432 24568999999999993

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=8.7e-10  Score=113.14  Aligned_cols=364  Identities=12%  Similarity=0.055  Sum_probs=224.0

Q ss_pred             ccHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCcHHHH----------HHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 037562          238 EILPAMVDGVWSD--DNSLQLEATTLFINLLSFDRSPPIDEV----------IQSGVVPRFVEFLMRQDYPQLQFKAAWA  305 (670)
Q Consensus       238 ~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~----------~~~g~l~~L~~ll~~~~~~~v~~~a~~~  305 (670)
                      +.+..+.+.+.++  +..++..|+..|.+.............          ....+...+++.+.+++ +. +..++.+
T Consensus        34 ~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~  111 (458)
T d1ibrb_          34 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQC  111 (458)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHH
Confidence            4466677777543  467888888888888765311111111          12234555677776665 33 3345555


Q ss_pred             HHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-cCChh
Q 037562          306 LTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-NANLS  382 (670)
Q Consensus       306 L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~-~~~~~  382 (670)
                      +..++..... .  -...+.++.+...+.+  .+...+..++.++..++.........-.....++.++..+.. +.+..
T Consensus       112 ~~~i~~~~~~-~--~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~  188 (458)
T d1ibrb_         112 VAGIACAEIP-V--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  188 (458)
T ss_dssp             HHHHHHHHGG-G--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHHhCC-c--ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHH
Confidence            5555431100 0  0113567888887765  557788889999988874322111110111235666666643 34567


Q ss_pred             HHHHHHHHHHhhhcCCC--CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC
Q 037562          383 MLRTATWTLFNFCRGKP--QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG  460 (670)
Q Consensus       383 ~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  460 (670)
                      ++..++.++.++.....  ...........+.+..++.+++++++..++.++..++..........+.......+.....
T Consensus       189 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~  268 (458)
T d1ibrb_         189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  268 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            88999999998886542  1222333456677888888999999999999999988655443332233334455566677


Q ss_pred             CCCccchhHHHHHHHHhhcCCchhhHH--------------------HHhCCChHHHHHhhcc------CCchhHHHHHH
Q 037562          461 HSSSSVLTPALRTIRNIVKGDDFQTQC--------------------IINCGALPYFLDMLVH------NHEESIKKEVS  514 (670)
Q Consensus       461 ~~~~~v~~~a~~~L~~l~~~~~~~~~~--------------------l~~~~~~~~L~~~l~~------~~~~~v~~~a~  514 (670)
                      +.++.++..|+..+..++.........                    .....+.+.+...+..      ..+..++..|.
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            788889999999888886422111100                    0011223444444432      11446888899


Q ss_pred             HHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHH
Q 037562          515 WIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKI  594 (670)
Q Consensus       515 ~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  594 (670)
                      .++..++...++..   . ..+++.+...+.++++.+|..|+.+|+.++....+.....+ -..+++.++..++++++.|
T Consensus       349 ~~l~~l~~~~~~~~---~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~V  423 (458)
T d1ibrb_         349 VCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVV  423 (458)
T ss_dssp             HHHHHHHHHTTTTH---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHhccHhh---h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHH
Confidence            88888876322211   1 12456677778889999999999999999875332221111 1346888999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 037562          595 VTVCLEGLENILKVGVA  611 (670)
Q Consensus       595 ~~~a~~~l~~l~~~~~~  611 (670)
                      |..|+++++++.....+
T Consensus       424 R~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         424 RDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.5e-07  Score=104.25  Aligned_cols=390  Identities=11%  Similarity=0.049  Sum_probs=240.5

Q ss_pred             HHHHH-HHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhH
Q 037562          240 LPAMV-DGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       240 i~~l~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +..++ +.+.++|++++.+|-..|.++...+ .        .+++..+.+.+.+.+ ...+|..|+..|.+.........
T Consensus         6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~   76 (861)
T d2bpta1           6 FAQLLENSILSPDQNIRLTSETQLKKLSNDN-F--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK   76 (861)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC-H--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-c--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence            33444 4457899999999999998875431 0        135667788776543 36899999988888765322111


Q ss_pred             HHH------------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhcccCChhHH
Q 037562          318 KVV------------IDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNENANLSML  384 (670)
Q Consensus       318 ~~i------------~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~  384 (670)
                      ...            ....+-..++..+.++++.+|..++.+++.++... |..+  .  ...++.++..+....+..++
T Consensus        77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~  152 (861)
T d2bpta1          77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVK  152 (861)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHH
T ss_pred             hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHH
Confidence            100            00112356777788899999999999999987321 1100  0  01356667777555556777


Q ss_pred             HHHHHHHHhhhcCCCCCChh---hhhhhHHHHHHhhcc--CChhHHHHHHHHHHHhccCChHHHH-HHHHcCCHHHHHHh
Q 037562          385 RTATWTLFNFCRGKPQPPFN---QVRPALPVLAQLIRS--NDEEVLTDACWALSYLSDGTNDKVQ-AVIEAGVYPRLVEL  458 (670)
Q Consensus       385 ~~a~~~L~~l~~~~~~~~~~---~~~~~i~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~i~~L~~l  458 (670)
                      ..++.++..++.........   .....++.+...+.+  .+..++..++.++.++......... ......+++.+...
T Consensus       153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  232 (861)
T d2bpta1         153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA  232 (861)
T ss_dssp             HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHH
Confidence            88899999998665332222   223455555555543  3578999999999998765443221 11222466778888


Q ss_pred             cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh-----
Q 037562          459 LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID-----  533 (670)
Q Consensus       459 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-----  533 (670)
                      +++++++++..++.++..++...+......+..-+...+.....+. ++.++..+...+..++............     
T Consensus       233 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  311 (861)
T d2bpta1         233 TQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSP  311 (861)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999999999875444333222222223334445555 8899999988888776421111111110     


Q ss_pred             -----------cCChHHHHHHhhc-------CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHH
Q 037562          534 -----------SGLIGPIVNLLQN-------TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIV  595 (670)
Q Consensus       534 -----------~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  595 (670)
                                 ..+++.+...+..       .+...+..+..++..++..........     ..+.+.....+.+...+
T Consensus       312 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  386 (861)
T d2bpta1         312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNR  386 (861)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHH
Confidence                       1235555555542       223577777777777665322121111     24455666788899999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          596 TVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       596 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ..+..++..+........           ....+  ...++.+.....++++.++..+.+++.++.
T Consensus       387 ~~a~~~l~~i~~~~~~~~-----------~~~~l--~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T d2bpta1         387 EAAVMAFGSIMDGPDKVQ-----------RTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             HHHHHHHHHTSSSSCHHH-----------HHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhh-----------HHHHH--HHHHHHHHHHhcCcchhhhhHHHHHHHHHH
Confidence            999999888764332211           11112  123677777788999999999998887663

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=1.6e-08  Score=91.23  Aligned_cols=150  Identities=16%  Similarity=0.174  Sum_probs=91.4

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      .|+.|.+.+| .++.+..  ...+++|++|+++++ ++..+++ ...+++|+.|++++| +++.+   +.+..+++|+.|
T Consensus        47 ~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L  117 (210)
T d1h6ta2          47 SIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDL---SSLKDLKKLKSL  117 (210)
T ss_dssp             TCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCG---GGGTTCTTCCEE
T ss_pred             CccEEECcCC-CCCCchh--HhhCCCCCEEeCCCc-cccCccc-cccCccccccccccc-ccccc---cccccccccccc
Confidence            6777777766 3444432  356778888888777 3555543 356777788887776 45554   345667777777


Q ss_pred             ccccccccceecc------------cccc-ccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcc
Q 037562          103 EIESCDKITEIVL------------VDDV-VAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMK  169 (670)
Q Consensus       103 ~i~~c~~l~~~~~------------~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~  169 (670)
                      ++.+|..- .+..            .... ........+++|+.+.+.++ +++.+..   ...+|+|++|++++| +++
T Consensus       118 ~l~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n-~l~~i~~---l~~l~~L~~L~Ls~N-~i~  191 (210)
T d1h6ta2         118 SLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HIS  191 (210)
T ss_dssp             ECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCC
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccccc-ccccccc---ccCCCCCCEEECCCC-CCC
Confidence            77766421 1110            0000 01112234677777777766 4555432   446788999998887 577


Q ss_pred             ccccCCcCCCCccceeeee
Q 037562          170 IFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       170 ~~p~~~~~~~~L~~l~i~~  188 (670)
                      .+| .+..+++|+.|++++
T Consensus       192 ~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             BCG-GGTTCTTCSEEEEEE
T ss_pred             CCh-hhcCCCCCCEEEccC
Confidence            776 355678888888764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=1e-07  Score=105.79  Aligned_cols=354  Identities=12%  Similarity=0.140  Sum_probs=208.3

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 037562          242 AMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI  321 (670)
Q Consensus       242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  321 (670)
                      .+...+.+++...+..|..++..++... ........-..+++.+++.+.+++ +.+|..++++++.++...   ...+.
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~---~~~~~  447 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSV---AESID  447 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHH---GGGSC
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHh---chhhh
Confidence            3334455788888999999998886653 222222222347888999999988 899999999999987621   11112


Q ss_pred             hCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCC----Cch-hHHHHHhcCChHHHHHHhcc-cCChhHHHHHHHHHH
Q 037562          322 DHGAVPIFVKLL---ASPSVDVRKQTVWALGNVAGD----SPR-CRDLVLSQGALIPLLAELNE-NANLSMLRTATWTLF  392 (670)
Q Consensus       322 ~~~~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~----~~~-~~~~i~~~~~i~~Ll~~l~~-~~~~~~~~~a~~~L~  392 (670)
                      ....++.++..+   ...++.++..+++++..++..    ... ......  ..+..++..... ..+..++..+..++.
T Consensus       448 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~  525 (861)
T d2bpta1         448 PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            223444444433   235677888888887777521    111 111111  124444544432 345567778888888


Q ss_pred             hhhcCCCCCChhhhhhhHHHHHHhh----ccCC-----------hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH
Q 037562          393 NFCRGKPQPPFNQVRPALPVLAQLI----RSND-----------EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE  457 (670)
Q Consensus       393 ~l~~~~~~~~~~~~~~~i~~L~~lL----~~~~-----------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~  457 (670)
                      .+....+...........+.+...+    ....           ..++..+..++..+............+ .++..+..
T Consensus       526 ~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~  604 (861)
T d2bpta1         526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHhh
Confidence            8877654443333333333333333    2111           123444445555544322222221121 34566666


Q ss_pred             hcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCC
Q 037562          458 LLGH-SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGL  536 (670)
Q Consensus       458 lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~  536 (670)
                      .+.. ++..++..++.+++.++..........+. .+++.+...+++. ++.++..|+.+++.++...++....... .+
T Consensus       605 ~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i  681 (861)
T d2bpta1         605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HH
T ss_pred             hcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HH
Confidence            6655 45568889999999988654433332332 4788888999888 8899999999999998754443333332 36


Q ss_pred             hHHHHHHhhcC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC----C-------hHHHHHHHHHHH
Q 037562          537 IGPIVNLLQNT--EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA----D-------PKIVTVCLEGLE  603 (670)
Q Consensus       537 i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~----~-------~~v~~~a~~~l~  603 (670)
                      ++.|++.+.++  +..++..++.+++.++....+....++-+  .++.+.+.+...    +       ..++..++.++.
T Consensus       682 ~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  759 (861)
T d2bpta1         682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            78888888754  46889999999999876433333333221  345555544322    1       236777788877


Q ss_pred             HHHHh
Q 037562          604 NILKV  608 (670)
Q Consensus       604 ~l~~~  608 (670)
                      .++..
T Consensus       760 ~i~~~  764 (861)
T d2bpta1         760 GIVAG  764 (861)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4.6e-07  Score=100.59  Aligned_cols=399  Identities=12%  Similarity=0.057  Sum_probs=242.3

Q ss_pred             ccHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCCCCcHH----------HHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 037562          238 EILPAMVDGVWS--DDNSLQLEATTLFINLLSFDRSPPID----------EVIQSGVVPRFVEFLMRQDYPQLQFKAAWA  305 (670)
Q Consensus       238 ~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~----------~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~  305 (670)
                      +-+..+.+.+.+  .+..+|..|+-.|.+...........          .-....+...+++.+.+++  .++..++.+
T Consensus        35 ~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~  112 (876)
T d1qgra_          35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQC  112 (876)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHH
Confidence            446666776654  34678999999998887542111000          0112234556777877765  345567888


Q ss_pred             HHHHcCCC-hhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-cCCh
Q 037562          306 LTNIASGT-SENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-NANL  381 (670)
Q Consensus       306 L~~l~~~~-~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~-~~~~  381 (670)
                      ++.++..+ +...    -.+.++.+.+.+.+  .+..++..++.+|..++..-......-.....++.++..+.. +.+.
T Consensus       113 i~~i~~~~~p~~~----Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~  188 (876)
T d1qgra_         113 VAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN  188 (876)
T ss_dssp             HHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCH
T ss_pred             HHHHHHHHCCccc----cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccH
Confidence            88887521 1000    13578889888865  347788899999999874322111000011246666776643 3356


Q ss_pred             hHHHHHHHHHHhhhcCCC--CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc
Q 037562          382 SMLRTATWTLFNFCRGKP--QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL  459 (670)
Q Consensus       382 ~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL  459 (670)
                      .++..++.++.+......  .........+++.+...+++++++++..++.++..+....+..........+...+....
T Consensus       189 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  268 (876)
T d1qgra_         189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  268 (876)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            788888888887765431  111222244667777888889999999999999999866555555455545666777778


Q ss_pred             CCCCccchhHHHHHHHHhhcCCchhhHH--------------------HHhCCChHHHHHhhccC------CchhHHHHH
Q 037562          460 GHSSSSVLTPALRTIRNIVKGDDFQTQC--------------------IINCGALPYFLDMLVHN------HEESIKKEV  513 (670)
Q Consensus       460 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------------------l~~~~~~~~L~~~l~~~------~~~~v~~~a  513 (670)
                      .+.+..++..++..+..++.........                    .....+++.+...+...      .+..++..|
T Consensus       269 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a  348 (876)
T d1qgra_         269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHH
Confidence            8888888888888877776422111100                    01112233444444321      133578888


Q ss_pred             HHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH
Q 037562          514 SWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK  593 (670)
Q Consensus       514 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  593 (670)
                      ..++..++.......   + ..+++.+...+.+.+...+..++.+++.++............. ..++.+...+.++++.
T Consensus       349 ~~~l~~l~~~~~~~~---~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~~~  423 (876)
T d1qgra_         349 GVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPSVV  423 (876)
T ss_dssp             HHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHhhhhh---h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcCCccH
Confidence            888877765222111   1 1134455556667889999999999999987655554444332 3788899999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562          594 IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY  660 (670)
Q Consensus       594 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~  660 (670)
                      ++..+++++..+++........      . .+...+     ++.+.... .+++.++..+.+.+..+
T Consensus       424 vr~~a~~~l~~~~~~~~~~~~~------~-~~~~~~-----~~~l~~~l-~~~~~v~~~~~~~l~~l  477 (876)
T d1qgra_         424 VRDTAAWTVGRICELLPEAAIN------D-VYLAPL-----LQCLIEGL-SAEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTSS------T-TTHHHH-----HHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcchhhhh------H-HHhhhH-----HHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence            9999999999998765432211      0 011111     23333322 34677777777666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=1.8e-08  Score=90.01  Aligned_cols=143  Identities=14%  Similarity=0.162  Sum_probs=101.9

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      ++++|.+.+|. ++++..  .+.+++|++|++++| .+..+++ +..+++|+.|++++|. +..+   +.+..+++|+.|
T Consensus        41 ~l~~L~l~~~~-i~~l~~--l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~-~~~~---~~l~~l~~L~~L  111 (199)
T d2omxa2          41 QVTTLQADRLG-IKSIDG--VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADI---TPLANLTNLTGL  111 (199)
T ss_dssp             TCCEEECTTSC-CCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCSEE
T ss_pred             CCCEEECCCCC-CCCccc--cccCCCcCcCccccc-cccCccc-ccCCcccccccccccc-cccc---cccccccccccc
Confidence            78889888873 555432  467899999999998 5766654 6778899999999884 3343   446788999999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH  182 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~  182 (670)
                      ++.+|.... +.         ....+++|+.|.++++. ++.++.   ...+++|+.|.+.+| +++.++. ...+++|+
T Consensus       112 ~l~~~~~~~-~~---------~~~~l~~L~~L~l~~n~-l~~~~~---l~~~~~L~~L~l~~n-~l~~l~~-l~~l~~L~  175 (199)
T d2omxa2         112 TLFNNQITD-ID---------PLKNLTNLNRLELSSNT-ISDISA---LSGLTSLQQLNFSSN-QVTDLKP-LANLTTLE  175 (199)
T ss_dssp             ECCSSCCCC-CG---------GGTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred             ccccccccc-cc---------ccchhhhhHHhhhhhhh-hccccc---ccccccccccccccc-cccCCcc-ccCCCCCC
Confidence            998876432 11         12357889999888763 444432   456788999998887 5666653 45678899


Q ss_pred             ceeeeecc
Q 037562          183 KVQLSRWD  190 (670)
Q Consensus       183 ~l~i~~~~  190 (670)
                      +|++++..
T Consensus       176 ~L~ls~N~  183 (199)
T d2omxa2         176 RLDISSNK  183 (199)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCC
Confidence            99886543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.76  E-value=2.3e-08  Score=89.29  Aligned_cols=138  Identities=19%  Similarity=0.228  Sum_probs=102.5

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .+|++|+++++ +++.++.  ...+++|+.|+++++. +..++. ...+++|+.|++++|.... .   .....+++|+.
T Consensus        62 ~nL~~L~Ls~N-~l~~~~~--l~~l~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~l~~~~~~~-~---~~~~~l~~L~~  132 (199)
T d2omxa2          62 NNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQITD-I---DPLKNLTNLNR  132 (199)
T ss_dssp             TTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCC-C---GGGTTCTTCSE
T ss_pred             CCcCcCccccc-cccCccc--ccCCcccccccccccc-cccccc-ccccccccccccccccccc-c---cccchhhhhHH
Confidence            38999999998 5777664  4689999999999886 444443 5678999999999886543 2   45678999999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCc
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNL  181 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L  181 (670)
                      |+++++. +..+.         ....+++|+.|.+.++ +++.+..   ...+|+|++|++++| +++.+|. ...+++|
T Consensus       133 L~l~~n~-l~~~~---------~l~~~~~L~~L~l~~n-~l~~l~~---l~~l~~L~~L~ls~N-~i~~i~~-l~~L~~L  196 (199)
T d2omxa2         133 LELSSNT-ISDIS---------ALSGLTSLQQLNFSSN-QVTDLKP---LANLTTLERLDISSN-KVSDISV-LAKLTNL  196 (199)
T ss_dssp             EECCSSC-CCCCG---------GGTTCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-GGGCTTC
T ss_pred             hhhhhhh-hcccc---------cccccccccccccccc-cccCCcc---ccCCCCCCEEECCCC-CCCCCcc-ccCCCCC
Confidence            9998874 43331         2345889999999886 5666542   456899999999999 4777763 4456777


Q ss_pred             cce
Q 037562          182 HKV  184 (670)
Q Consensus       182 ~~l  184 (670)
                      ++|
T Consensus       197 ~~L  199 (199)
T d2omxa2         197 ESL  199 (199)
T ss_dssp             SEE
T ss_pred             CcC
Confidence            654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=3.3e-08  Score=90.44  Aligned_cols=77  Identities=22%  Similarity=0.285  Sum_probs=51.7

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +|+.|.+.+| +++.+..  ...+++|++|+++++. +..+.+ ...+++|+.+.+++|. ++.+   +.+..+++|+.+
T Consensus        42 ~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~-~~~i---~~l~~l~~L~~l  112 (227)
T d1h6ua2          42 GITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNV---SAIAGLQSIKTL  112 (227)
T ss_dssp             TCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEE
T ss_pred             CcCEEECCCC-CCCcchh--HhcCCCCcEeecCCce-eecccc-cccccccccccccccc-cccc---cccccccccccc
Confidence            7888888887 4666532  4678888888888874 444433 4567778888877763 3444   345567777777


Q ss_pred             cccccc
Q 037562          103 EIESCD  108 (670)
Q Consensus       103 ~i~~c~  108 (670)
                      .+.+|.
T Consensus       113 ~l~~~~  118 (227)
T d1h6ua2         113 DLTSTQ  118 (227)
T ss_dssp             ECTTSC
T ss_pred             cccccc
Confidence            777665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.7e-08  Score=91.79  Aligned_cols=156  Identities=17%  Similarity=0.173  Sum_probs=110.2

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +++.|++++. +++.++......+++|++|+++++ ++..++. ...+++|++|+++++ +++..  +.....+++|+.|
T Consensus        32 ~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~--~~~~~~l~~L~~L  105 (266)
T d1p9ag_          32 DTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN-QLQSL--PLLGQTLPALTVL  105 (266)
T ss_dssp             TCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS-CCSSC--CCCTTTCTTCCEE
T ss_pred             CCCEEECcCC-cCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccccc-ccccc--ccccccccccccc
Confidence            7899998876 577777655577899999999887 5777664 357889999999887 45443  2456678889998


Q ss_pred             ccccccccceecc--------------ccc---cccccccccccccccccccccccccccccCCcccCCCCccEEeEecC
Q 037562          103 EIESCDKITEIVL--------------VDD---VVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYC  165 (670)
Q Consensus       103 ~i~~c~~l~~~~~--------------~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C  165 (670)
                      +++++...+ +..              ...   .........+++|+.|.+.++ +++.++.+ ....+++|++|+++++
T Consensus       106 ~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         106 DVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG-LLNGLENLDTLLLQEN  182 (266)
T ss_dssp             ECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred             cccccccce-eeccccccccccccccccccccceeccccccccccchhcccccc-cccccCcc-ccccccccceeecccC
Confidence            888765322 110              000   001112234677888888775 56666553 2456899999999998


Q ss_pred             CCccccccCCcCCCCccceeeee
Q 037562          166 PNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       166 ~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      . |+++|.+....++|+.|++++
T Consensus       183 ~-L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         183 S-LYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             C-CCCCCTTTTTTCCCSEEECCS
T ss_pred             C-CcccChhHCCCCCCCEEEecC
Confidence            4 899999988899999999864

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.4e-06  Score=94.62  Aligned_cols=388  Identities=10%  Similarity=0.042  Sum_probs=242.7

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhH-H
Q 037562          241 PAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENT-K  318 (670)
Q Consensus       241 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~-~  318 (670)
                      -.+++...++|.+.+.+|-..|..+...+         ..|.+..|.+.+.+.+ ...+|..|+-.|.|......... .
T Consensus         4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~   74 (876)
T d1qgra_           4 ITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   74 (876)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcC---------hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhh
Confidence            45666667899999999999998774431         0235677778775543 36799999999988765221111 1


Q ss_pred             H----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhccc-CChhHHHH
Q 037562          319 V----------VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEN-ANLSMLRT  386 (670)
Q Consensus       319 ~----------i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll~~l~~~-~~~~~~~~  386 (670)
                      .          -....+-..+++.+.+++. ++..++.+++.++... |..  .  -.+.++.+++.+.+. ....++..
T Consensus        75 ~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~--~--Wpeli~~L~~~l~~~~~~~~~~~~  149 (876)
T d1qgra_          75 QYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVN--Q--WPELIPQLVANVTNPNSTEHMKES  149 (876)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGT--C--CTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcc--c--cHHHHHHHHHHhcCCCCcHHHHHH
Confidence            0          0011234567777777654 4556778888876321 100  0  013577788777433 34567778


Q ss_pred             HHHHHHhhhcCCCC-CChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCChHHHH-HHHHcCCHHHHHHhcCCC
Q 037562          387 ATWTLFNFCRGKPQ-PPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTNDKVQ-AVIEAGVYPRLVELLGHS  462 (670)
Q Consensus       387 a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~  462 (670)
                      ++.++..++..-.. ........+++.++..+.++  +.+++..++.++.+.......... .....-+++.+...+.++
T Consensus       150 ~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  229 (876)
T d1qgra_         150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP  229 (876)
T ss_dssp             HHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCC
Confidence            89999988764321 11223356778888888654  468899999999887754332211 111223567777888889


Q ss_pred             CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHH------------
Q 037562          463 SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA------------  530 (670)
Q Consensus       463 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~------------  530 (670)
                      +++++..++.++..++...+......+...+...+.....+. ..+++..+...+..++.........            
T Consensus       230 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  308 (876)
T d1qgra_         230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE  308 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHH
Confidence            999999999999999886666555455555666777777777 8888888888777776421111110            


Q ss_pred             --------HHhcCChHHHHHHhhc-------CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHH
Q 037562          531 --------VIDSGLIGPIVNLLQN-------TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIV  595 (670)
Q Consensus       531 --------l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  595 (670)
                              .....+++.+...+..       ++..++..|..++..++..........     .++.+.+.+.+.+...+
T Consensus       309 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----~~~~i~~~l~~~~~~~r  383 (876)
T d1qgra_         309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYR  383 (876)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhh-----hHHHHHHhhccchHHHH
Confidence                    0111233444444432       223578888888887766422222222     34566777788999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          596 TVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       596 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      ..+..++..+........           ....  -...++.+.....++++.|+..|.+++.++.
T Consensus       384 ~~~~~~l~~~~~~~~~~~-----------~~~~--~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~  436 (876)
T d1qgra_         384 DAAVMAFGCILEGPEPSQ-----------LKPL--VIQAMPTLIELMKDPSVVVRDTAAWTVGRIC  436 (876)
T ss_dssp             HHHHHHHHHTSSSSCHHH-----------HHHH--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhHHH-----------HHHH--HHHHHHHHHHhhcCCccHHHHHHHHHHHHHH
Confidence            988888877653221111           1111  1223567777788999999999999988774

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=2.6e-06  Score=82.91  Aligned_cols=324  Identities=13%  Similarity=0.105  Sum_probs=202.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH---HHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 037562          282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK---VVIDHG--AVPIFVKLLASPSVDVRKQTVWALGNVAGDSP  356 (670)
Q Consensus       282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~i~~~~--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  356 (670)
                      .+..++.++.....+++..+++..+..+...++....   .+.+..  .-+.+...+..++.-+...+...+..++....
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~  154 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  154 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence            5778888888766588888888888887764442222   122211  22445556666666677777777777775443


Q ss_pred             hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh--hhhhhHHHHHHhhcc----C----------
Q 037562          357 RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN--QVRPALPVLAQLIRS----N----------  420 (670)
Q Consensus       357 ~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~L~~lL~~----~----------  420 (670)
                      ......-.......++..+....+.+.+..++.++..+...++.+...  .....++.++..|..    +          
T Consensus       155 ~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~  234 (477)
T d1ho8a_         155 HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNS  234 (477)
T ss_dssp             CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------------
T ss_pred             cccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccC
Confidence            322211111112344445546677778888888888888775333222  123345555555532    1          


Q ss_pred             ---ChhHHHHHHHHHHHhccCChHHHHHHHHc--CCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCch-----hhHHHH
Q 037562          421 ---DEEVLTDACWALSYLSDGTNDKVQAVIEA--GVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDF-----QTQCII  489 (670)
Q Consensus       421 ---~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-----~~~~l~  489 (670)
                         +.+++..++-|++-++.. +.....+.+.  +.++.++.+++. ..+++..-++.++.|+......     ....++
T Consensus       235 ~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v  313 (477)
T d1ho8a_         235 NHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLL  313 (477)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence               247789999999999864 4444545554  347778888754 5677888899999999864322     123344


Q ss_pred             hCCChHHHHHhhccCC--chhHHHHHHHHHHHhhc------CCHHHHHH----------------H--------Hhc--C
Q 037562          490 NCGALPYFLDMLVHNH--EESIKKEVSWIISNITC------GNREQIQA----------------V--------IDS--G  535 (670)
Q Consensus       490 ~~~~~~~L~~~l~~~~--~~~v~~~a~~~L~~l~~------~~~~~~~~----------------l--------~~~--~  535 (670)
                      ..++++. +..|....  |+++....-..-..+..      .-+++..+                +        -+.  .
T Consensus       314 ~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~  392 (477)
T d1ho8a_         314 LGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYK  392 (477)
T ss_dssp             HHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGH
T ss_pred             HcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchH
Confidence            5555554 44454322  56555432222111110      01111111                1        111  2


Q ss_pred             ChHHHHHHhh----------cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562          536 LIGPIVNLLQ----------NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI  605 (670)
Q Consensus       536 ~i~~L~~ll~----------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  605 (670)
                      ++..|+++++          +.|+.+..-||.-++.++.+ .|..+..+-+.|+-..+++++.++|++|+..|+.++..+
T Consensus       393 llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~-~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         393 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  471 (477)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            5888999986          34678889999999999998 667777777889999999999999999999999999998


Q ss_pred             HHh
Q 037562          606 LKV  608 (670)
Q Consensus       606 ~~~  608 (670)
                      +..
T Consensus       472 m~~  474 (477)
T d1ho8a_         472 IGY  474 (477)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            853

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.53  E-value=2.3e-07  Score=83.38  Aligned_cols=127  Identities=15%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562           45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE  124 (670)
Q Consensus        45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  124 (670)
                      .+.+|++|.+.+|. ++.+. ....|++|++|+++++ +++.+   +....+++|+.|++++|. ++.+.         .
T Consensus        44 ~L~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~L~~n-~i~~l---~~~~~l~~L~~L~l~~n~-i~~l~---------~  107 (210)
T d1h6ta2          44 ELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDI---KPLANLKNLGWLFLDENK-VKDLS---------S  107 (210)
T ss_dssp             HHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCGG---------G
T ss_pred             HhcCccEEECcCCC-CCCch-hHhhCCCCCEEeCCCc-cccCc---cccccCcccccccccccc-ccccc---------c
Confidence            46789999998884 54543 3567999999999998 56665   445789999999999874 55442         1


Q ss_pred             ccccccccccccccccc-----------cccccc-------CCcccCCCCccEEeEecCCCccccccCCcCCCCccceee
Q 037562          125 VITFRELKELNLLQMQN-----------LISFCS-------GNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQL  186 (670)
Q Consensus       125 ~~~~~~L~~L~l~~~~~-----------l~~~~~-------~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i  186 (670)
                      ...+|+|+.|.+.++..           ++.+..       ......+++|+.+.+.++ ++..++. ...+++|++|++
T Consensus       108 l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n-~l~~i~~-l~~l~~L~~L~L  185 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYL  185 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-ccCCCCCCEEEC
Confidence            23456666666665431           111110       011234667777777766 3455543 445677777777


Q ss_pred             eec
Q 037562          187 SRW  189 (670)
Q Consensus       187 ~~~  189 (670)
                      ++.
T Consensus       186 s~N  188 (210)
T d1h6ta2         186 SKN  188 (210)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=5.9e-06  Score=80.36  Aligned_cols=336  Identities=14%  Similarity=0.094  Sum_probs=198.3

Q ss_pred             hHHHHhhcchhhhhhccccCCCccccchhhhhhcc-HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCC
Q 037562          205 IKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEI-LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVI-QSGV  282 (670)
Q Consensus       205 i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~  282 (670)
                      +-+..+-.+.+++++.+....+-..   .....+. -+.+...+.+++.-....+...+..+++.. .......- ....
T Consensus        91 ~vqyvL~Li~dLL~~d~~~~~~~~~---~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~  166 (477)
T d1ho8a_          91 CKKSVQNLIAELLSSDKYGDDTVKF---FQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKN  166 (477)
T ss_dssp             HHHHHHHHHHHHHHCSSSSHHHHHH---HHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCcchhHHHHH---HhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHh
Confidence            3333444566677665533222111   1111111 234455555666666777777777776653 22222110 1112


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCC-----------------CCHHHHHH
Q 037562          283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH--GAVPIFVKLLAS-----------------PSVDVRKQ  343 (670)
Q Consensus       283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~L~~lL~~-----------------~~~~v~~~  343 (670)
                      ...+-.+...++ .+.+..|+.++..+.. .+++|..+...  ..++.++..|+.                 ....++..
T Consensus       167 ~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~  244 (477)
T d1ho8a_         167 NNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYH  244 (477)
T ss_dssp             HHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHH
T ss_pred             hHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHH
Confidence            333334445566 7899999999999998 78889887542  345555555532                 12477889


Q ss_pred             HHHHHHHhhCCCchhHHHHHhc--CChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC-----hhhhhhhHHHHHHh
Q 037562          344 TVWALGNVAGDSPRCRDLVLSQ--GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP-----FNQVRPALPVLAQL  416 (670)
Q Consensus       344 a~~~L~~l~~~~~~~~~~i~~~--~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~i~~L~~l  416 (670)
                      ++.+++-++.+ +.....+.+.  +.++.++..+.....+.+.+.++.++.|++.......     ..+..+.++.++..
T Consensus       245 ~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~  323 (477)
T d1ho8a_         245 SLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQS  323 (477)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHH
Confidence            99999999864 4445555444  3488889999888899999999999999997642221     11122223334444


Q ss_pred             hcc---CChhHHHHHHHHHHHhcc----C---ChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562          417 IRS---NDEEVLTDACWALSYLSD----G---TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ  486 (670)
Q Consensus       417 L~~---~~~~v~~~al~~L~~l~~----~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  486 (670)
                      |..   .|+++....- .|.....    .   .+.+...+.        -..| .-++..+....|- -|.....+... 
T Consensus       324 L~~r~~~Dedl~edl~-~L~~~L~~~~k~lTsfd~Y~~Ev~--------Sg~L-~WSP~H~se~FW~-EN~~kf~e~~~-  391 (477)
T d1ho8a_         324 LSERKYSDEELRQDIS-NLKEILENEYQELTSFDEYVAELD--------SKLL-CWSPPHVDNGFWS-DNIDEFKKDNY-  391 (477)
T ss_dssp             HHSSCCSSHHHHHHHH-HHHHHHHHHHHTCCHHHHHHHHHH--------HTCC-CCCGGGGCHHHHH-HHSGGGSSGGG-
T ss_pred             HhcCCCCCHHHHHHHH-HHHHHHHHHHHhcCcHHHHHHHHh--------cCCC-CCCCCcCChhHHH-HHHHhhcccch-
Confidence            543   3666654432 2222111    0   011111111        1112 1122222233332 22222222222 


Q ss_pred             HHHhCCChHHHHHhhcc---------CCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562          487 CIINCGALPYFLDMLVH---------NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAW  557 (670)
Q Consensus       487 ~l~~~~~~~~L~~~l~~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  557 (670)
                           .++..|+++|.+         ..++.+..-||.=++.++...|..+..+-+-|+=..++.++.++|++||.+|+.
T Consensus       392 -----~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~  466 (477)
T d1ho8a_         392 -----KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALK  466 (477)
T ss_dssp             -----HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence                 256788888852         127778888999999999988888888888888889999999999999999999


Q ss_pred             HHHHhcC
Q 037562          558 AISNATK  564 (670)
Q Consensus       558 aL~~l~~  564 (670)
                      |+..+..
T Consensus       467 avQklm~  473 (477)
T d1ho8a_         467 ATQAIIG  473 (477)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=6.1e-07  Score=89.14  Aligned_cols=143  Identities=16%  Similarity=0.208  Sum_probs=88.5

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .+|++|.+.++ .++.++.  ...+++|+.|++++|. +..+++ ...+++|+.|+++++. ++.+   +....++.++.
T Consensus       219 ~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~~~-l~~~---~~~~~~~~l~~  289 (384)
T d2omza2         219 TNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNI---SPLAGLTALTN  289 (384)
T ss_dssp             TTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCC---GGGTTCTTCSE
T ss_pred             CCCCEEECCCC-CCCCcch--hhcccccchhccccCc-cCCCCc-ccccccCCEeeccCcc-cCCC---Ccccccccccc
Confidence            38899999887 4666543  3578899999998875 555543 4567888888887663 3332   22334444444


Q ss_pred             ecccccc---------------------ccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEE
Q 037562          102 MEIESCD---------------------KITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEIL  160 (670)
Q Consensus       102 L~i~~c~---------------------~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L  160 (670)
                      +.+..+.                     +++.+         .....+|+|+.|.+.+| +++.+..   ...+|+|+.|
T Consensus       290 l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l---------~~l~~l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L  356 (384)
T d2omza2         290 LELNENQLEDISPISNLKNLTYLTLYFNNISDI---------SPVSSLTKLQRLFFANN-KVSDVSS---LANLTNINWL  356 (384)
T ss_dssp             EECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC---------GGGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEE
T ss_pred             ccccccccccccccchhcccCeEECCCCCCCCC---------cccccCCCCCEEECCCC-CCCCChh---HcCCCCCCEE
Confidence            4443332                     12221         12345777888888877 5665542   3457788888


Q ss_pred             eEecCCCccccccCCcCCCCccceeeee
Q 037562          161 VVNYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       161 ~i~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      ++++| +++.+|. ...+++|+.|+|++
T Consensus       357 ~l~~N-~l~~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         357 SAGHN-QISDLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             ECCSS-CCCBCGG-GTTCTTCSEEECCC
T ss_pred             ECCCC-cCCCChh-hccCCCCCEeeCCC
Confidence            88766 4666653 45577888877753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.42  E-value=7.1e-07  Score=85.48  Aligned_cols=57  Identities=21%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             cccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562          129 RELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       129 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      +.++.|.++++ .++++... ....+|+|+.|++.+| +++++|.++..+++|+.|++++
T Consensus       195 ~~l~~L~~s~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         195 NNLAKLGLSFN-SISAVDNG-SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             TTCCEEECCSS-CCCEECTT-TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS
T ss_pred             ccccccccccc-cccccccc-cccccccceeeecccc-cccccccccccccCCCEEECCC
Confidence            34444444443 33333322 2345678888888887 6777777777778888887765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=6.6e-07  Score=83.70  Aligned_cols=140  Identities=20%  Similarity=0.235  Sum_probs=90.3

Q ss_pred             cCc--CcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccc
Q 037562           31 NCY--RLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC  107 (670)
Q Consensus        31 ~c~--~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  107 (670)
                      +|.  +|+.+|..   ..++|++|++++. .+..+++. +..+++|++|+++++ +++.+   +....+++|++|+++++
T Consensus        16 ~C~~~~L~~iP~~---lp~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l---~~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          16 NCDKRNLTALPPD---LPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKL---QVDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             ECTTSCCSSCCSC---CCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEE---ECCSCCTTCCEEECCSS
T ss_pred             EccCCCCCeeCcC---cCcCCCEEECcCC-cCCCcCHHHhhccccccccccccc-ccccc---ccccccccccccccccc
Confidence            563  47887753   2368999999886 47777653 567899999999998 67766   34467999999999887


Q ss_pred             cccceeccccccccccccccccccccccccccc-----------------------cccccccCCcccCCCCccEEeEec
Q 037562          108 DKITEIVLVDDVVAQDEVITFRELKELNLLQMQ-----------------------NLISFCSGNCAFTFPSLEILVVNY  164 (670)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----------------------~l~~~~~~~~~~~~~~L~~L~i~~  164 (670)
                      . ++.++.        ....+++|+.|.++++.                       .++.++.. ....+++|+.+++.+
T Consensus        88 ~-l~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~-~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          88 Q-LQSLPL--------LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-LLTPTPKLEKLSLAN  157 (266)
T ss_dssp             C-CSSCCC--------CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTT
T ss_pred             c-cccccc--------ccccccccccccccccccceeeccccccccccccccccccccceeccc-cccccccchhccccc
Confidence            4 433221        11234555555554432                       22222221 223467788888877


Q ss_pred             CCCccccccC-CcCCCCccceeeeec
Q 037562          165 CPNMKIFSGG-ELSTPNLHKVQLSRW  189 (670)
Q Consensus       165 C~~l~~~p~~-~~~~~~L~~l~i~~~  189 (670)
                      + ++..+|.+ +..+++|++|++++.
T Consensus       158 N-~l~~~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         158 N-NLTELPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             S-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             c-cccccCccccccccccceeecccC
Confidence            6 56666654 345788888888653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.2e-07  Score=80.89  Aligned_cols=79  Identities=9%  Similarity=0.081  Sum_probs=40.7

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      .+++|+++++ +++.++.. ...+++|+.|+++++ .+.+++ .+..+++|+.|++++|. ++.+. +.....+|+|++|
T Consensus        19 ~lr~L~L~~n-~I~~i~~~-~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~-~~~~~~l~~L~~L   92 (162)
T d1a9na_          19 RDRELDLRGY-KIPVIENL-GATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNR-ICRIG-EGLDQALPDLTEL   92 (162)
T ss_dssp             SCEEEECTTS-CCCSCCCG-GGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSC-CCEEC-SCHHHHCTTCCEE
T ss_pred             cCcEEECCCC-CCCccCcc-ccccccCCEEECCCC-CCCccC-CcccCcchhhhhccccc-ccCCC-ccccccccccccc
Confidence            5666666655 34444321 234566666666665 344442 34455666666666663 34431 1223445666666


Q ss_pred             ccccc
Q 037562          103 EIESC  107 (670)
Q Consensus       103 ~i~~c  107 (670)
                      ++.++
T Consensus        93 ~L~~N   97 (162)
T d1a9na_          93 ILTNN   97 (162)
T ss_dssp             ECCSC
T ss_pred             eeccc
Confidence            66555

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.38  E-value=3e-08  Score=78.98  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=89.5

Q ss_pred             cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChH
Q 037562          459 LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIG  538 (670)
Q Consensus       459 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~  538 (670)
                      |+++++.||..|+++|+.+.            ...++.|+..+.++ ++.+|..|+++|+++..  +         +.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--h---------hhHH
Confidence            46788889999988887652            13567888999988 99999999999988742  2         2468


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHH
Q 037562          539 PIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE  603 (670)
Q Consensus       539 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~  603 (670)
                      .|+.++.++++.||..|+.+|+.+..   +.         .++.|..+++++++.|+..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---cc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88999999999999999999999853   22         4677888999999999999998875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.29  E-value=1.4e-06  Score=83.60  Aligned_cols=59  Identities=15%  Similarity=0.188  Sum_probs=38.9

Q ss_pred             cccEEEeccCc--CcccccccccccCCCCcEEEEecCCCCc-cccCCCccccccceeeecccc
Q 037562           23 EVKISEAYNCY--RLENILIEESSVMNNLVILCVHCCDHLI-NLVPSSTSFQNLTNLVVSHCK   82 (670)
Q Consensus        23 ~L~~L~i~~c~--~l~~~~~~~~~~~~~L~~L~i~~c~~l~-~~~~~~~~~~~L~~L~i~~c~   82 (670)
                      ++..|++.++.  +...+|.. ...+++|++|++++|.++. .+|..++.+++|++|+++++.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~  112 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN  112 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC
T ss_pred             EEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhcccc
Confidence            57777777762  22233333 4677888888888777765 466667777778888777663

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.22  E-value=6.4e-07  Score=70.96  Aligned_cols=88  Identities=18%  Similarity=0.155  Sum_probs=74.3

Q ss_pred             ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562          238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT  317 (670)
Q Consensus       238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  317 (670)
                      +.++.|++.+.++++.++..|+++|.++...            +.++.|.+++++++ +.||..|+++|+.+..  +   
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~------------~~~~~L~~~l~d~~-~~VR~~a~~aL~~i~~--~---   83 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------------RAVEPLIKLLEDDS-GFVRSGAARSLEQIGG--E---   83 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH------------HHHHHHHHHHHHCC-THHHHHHHHHHHHHCS--H---
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh------------hhHHHHHhhhccch-hHHHHHHHHHHHHhCc--c---
Confidence            5678899999999999999999999766211            25788999999998 8999999999999854  2   


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 037562          318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALG  349 (670)
Q Consensus       318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  349 (670)
                            +.++.|..+++++++.+|..|+.+|.
T Consensus        84 ------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          84 ------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             ------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                  35788889999999999999998875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.3e-06  Score=79.68  Aligned_cols=106  Identities=13%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             ccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCC
Q 037562           70 FQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGN  149 (670)
Q Consensus        70 ~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  149 (670)
                      +++|+.+++.+. .++.+ ++..+..+++|++|++.++. ++.+..       .....+++|+.+.+.++. ++.+... 
T Consensus       128 ~~~L~~l~l~~N-~l~~i-~~~~f~~~~~L~~L~l~~N~-l~~l~~-------~~f~~l~~L~~l~l~~N~-l~~i~~~-  195 (284)
T d1ozna_         128 LAALQYLYLQDN-ALQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPE-------RAFRGLHSLDRLLLHQNR-VAHVHPH-  195 (284)
T ss_dssp             CTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCEECT-------TTTTTCTTCCEEECCSSC-CCEECTT-
T ss_pred             hcccchhhhccc-ccccc-ChhHhccccchhhcccccCc-ccccch-------hhhccccccchhhhhhcc-ccccChh-
Confidence            444444444433 23332 11223345555555555552 333321       112235566666666543 2233221 


Q ss_pred             cccCCCCccEEeEecCCCccccc-cCCcCCCCccceeeee
Q 037562          150 CAFTFPSLEILVVNYCPNMKIFS-GGELSTPNLHKVQLSR  188 (670)
Q Consensus       150 ~~~~~~~L~~L~i~~C~~l~~~p-~~~~~~~~L~~l~i~~  188 (670)
                      ....+++|+.|+++++. +..+| ......++|+.|++++
T Consensus       196 ~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         196 AFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCS
T ss_pred             Hhhhhhhcccccccccc-cccccccccccccccCEEEecC
Confidence            24556788888888765 34444 3445678888888754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.18  E-value=3e-06  Score=83.92  Aligned_cols=151  Identities=16%  Similarity=0.186  Sum_probs=103.8

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +++.+.++++ .++.++.  ...+++|++|++.++. +..++ ....+++|+.|++.+|. ++.+   +.+..+++|++|
T Consensus       198 ~~~~l~l~~n-~i~~~~~--~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~---~~~~~~~~L~~L  268 (384)
T d2omza2         198 NLESLIATNN-QISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQ-ISNL---APLSGLTKLTEL  268 (384)
T ss_dssp             TCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCC---GGGTTCTTCSEE
T ss_pred             ccceeeccCC-ccCCCCc--ccccCCCCEEECCCCC-CCCcc-hhhcccccchhccccCc-cCCC---CcccccccCCEe
Confidence            7888888776 3555443  3567899999999984 55543 45678999999999984 5555   456778999999


Q ss_pred             ccccccccceecc------------cccc-ccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcc
Q 037562          103 EIESCDKITEIVL------------VDDV-VAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMK  169 (670)
Q Consensus       103 ~i~~c~~l~~~~~------------~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~  169 (670)
                      +++++. +..+..            .... ........+++++.|.++++ +++.+..   ...+|+|++|++++| +++
T Consensus       269 ~l~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~---l~~l~~L~~L~L~~n-~l~  342 (384)
T d2omza2         269 KLGANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFANN-KVS  342 (384)
T ss_dssp             ECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCC
T ss_pred             eccCcc-cCCCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCCcc---cccCCCCCEEECCCC-CCC
Confidence            997654 222211            0000 01122345677888888766 5555532   456899999999999 677


Q ss_pred             ccccCCcCCCCccceeeeec
Q 037562          170 IFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       170 ~~p~~~~~~~~L~~l~i~~~  189 (670)
                      .+| .+..+|+|++|++++.
T Consensus       343 ~l~-~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         343 DVS-SLANLTNINWLSAGHN  361 (384)
T ss_dssp             CCG-GGGGCTTCCEEECCSS
T ss_pred             CCh-hHcCCCCCCEEECCCC
Confidence            777 4566899999999654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.9e-06  Score=76.97  Aligned_cols=160  Identities=18%  Similarity=0.125  Sum_probs=92.2

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .+++|.|++. +++.++......+++|++|++++.. +..++.. ...++.++++.+.....++.+. +..+.++++|++
T Consensus        33 ~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~l~~L~~  109 (284)
T d1ozna_          33 ASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHT  109 (284)
T ss_dssp             TCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCE
T ss_pred             CCCEEECcCC-cCCCCCHHHhhcccccccccccccc-cccccccccccccccccccccccccccccc-chhhcccccCCE
Confidence            6788888875 5777776555677888888887653 4444332 2334566666666666666542 234556777777


Q ss_pred             eccccccccceecccc--------------c---cccccccccccccccccccccccccccccCCcccCCCCccEEeEec
Q 037562          102 MEIESCDKITEIVLVD--------------D---VVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNY  164 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~--------------~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~  164 (670)
                      |++.++..- .+....              .   .........+++|+.|.+.++ +++.++.. ....+++|+.+.+.+
T Consensus       110 L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~-~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         110 LHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCS
T ss_pred             EecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccC-cccccchh-hhccccccchhhhhh
Confidence            777666421 111000              0   000111223566777777665 45555443 234567777777777


Q ss_pred             CCCccccccCCcCCCCccceeeee
Q 037562          165 CPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       165 C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      +.-....|..+..+++|++|++++
T Consensus       187 N~l~~i~~~~f~~l~~L~~L~l~~  210 (284)
T d1ozna_         187 NRVAHVHPHAFRDLGRLMTLYLFA  210 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccccccChhHhhhhhhcccccccc
Confidence            654444456666677777777754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.12  E-value=7.5e-06  Score=74.18  Aligned_cols=147  Identities=14%  Similarity=0.167  Sum_probs=97.7

Q ss_pred             CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccc--c-----------
Q 037562           21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKI--V-----------   87 (670)
Q Consensus        21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~--l-----------   87 (670)
                      ..+|+.|+++++. +..+..  ...+++|+.+.+++|. ++.++ ....+++|+.+.+.+|.....  +           
T Consensus        62 l~~L~~L~ls~n~-i~~~~~--l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~  136 (227)
T d1h6ua2          62 LNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL  136 (227)
T ss_dssp             CTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred             CCCCcEeecCCce-eecccc--cccccccccccccccc-ccccc-cccccccccccccccccccccchhccccchhhhhc
Confidence            3489999998873 554443  3567888888887764 33333 234566777777766653211  0           


Q ss_pred             -----ccchhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeE
Q 037562           88 -----LTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVV  162 (670)
Q Consensus        88 -----~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i  162 (670)
                           .........++|++|.+.+|. +..+         .....+|+|+.|.++++ ++++++.   ...+|+|++|++
T Consensus       137 ~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~---------~~l~~l~~L~~L~Ls~n-~l~~l~~---l~~l~~L~~L~L  202 (227)
T d1h6ua2         137 DLNQITNISPLAGLTNLQYLSIGNAQ-VSDL---------TPLANLSKLTTLKADDN-KISDISP---LASLPNLIEVHL  202 (227)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSSC-CCCC---------GGGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEEC
T ss_pred             hhhhhchhhhhccccccccccccccc-cccc---------hhhcccccceecccCCC-ccCCChh---hcCCCCCCEEEC
Confidence                 011234456677777776653 2211         12346899999999987 6777653   457899999999


Q ss_pred             ecCCCccccccCCcCCCCccceeeee
Q 037562          163 NYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       163 ~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      ++| +++.+|. ...+++|+.|++++
T Consensus       203 s~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         203 KNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             TTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             cCC-cCCCCcc-cccCCCCCEEEeeC
Confidence            999 6888874 55789999998864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.06  E-value=1.1e-05  Score=76.82  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=43.6

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeeccccccccc
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIV   87 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l   87 (670)
                      ++++|+++++ +++.++......+++|++|++.+|.-. .+ +..+..+++|+.|++.++ +++.+
T Consensus        32 ~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n-~l~~l   94 (305)
T d1xkua_          32 DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN-QLKEL   94 (305)
T ss_dssp             TCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSS-CCSBC
T ss_pred             CCCEEECcCC-cCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecccCC-ccCcC
Confidence            7888888876 577777654567788888888888644 44 334566788888888777 34443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.03  E-value=1.5e-07  Score=83.44  Aligned_cols=150  Identities=15%  Similarity=0.129  Sum_probs=95.1

Q ss_pred             cccEEEecc-CcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYN-CYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~-c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .++.+.+.+ .+.++.++.+ ...+++|++|+++++. ++.++ ....+++|+.|++++| .++.+.  .....+++|+.
T Consensus        24 ~~~~~~l~~~~~~i~~l~~s-l~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~--~~~~~~~~L~~   97 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIE--NLDAVADTLEE   97 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHH-HHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEE-EECSCS--SHHHHHHHCCE
T ss_pred             ccceeeeecccCchhhhhhH-HhcccccceeECcccC-CCCcc-cccCCccccChhhccc-cccccc--ccccccccccc
Confidence            455555543 4566666543 4678999999998774 66654 4567889999999988 466551  23345678999


Q ss_pred             eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-------
Q 037562          102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-------  174 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-------  174 (670)
                      |++.++ .++.+.         ....+++|+.|.++++ +++.+..-.....+|+|+.|++.++|--...+..       
T Consensus        98 L~l~~N-~i~~l~---------~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r  166 (198)
T d1m9la_          98 LWISYN-QIASLS---------GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR  166 (198)
T ss_dssp             EECSEE-ECCCHH---------HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHH
T ss_pred             cccccc-cccccc---------cccccccccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHH
Confidence            999887 355431         1245788999998875 2333321112356899999999987632222221       


Q ss_pred             ---CcCCCCccceeeeec
Q 037562          175 ---ELSTPNLHKVQLSRW  189 (670)
Q Consensus       175 ---~~~~~~L~~l~i~~~  189 (670)
                         +..+|+|+.|+-..+
T Consensus       167 ~~vi~~lp~L~~LD~~~I  184 (198)
T d1m9la_         167 IEVVKRLPNLKKLDGMPV  184 (198)
T ss_dssp             HHHHHHCSSCCEESSGGG
T ss_pred             HHHHHHCCCcCEeCCccC
Confidence               234678887754333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=5.6e-06  Score=66.57  Aligned_cols=75  Identities=17%  Similarity=0.083  Sum_probs=50.4

Q ss_pred             EEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccc
Q 037562           26 ISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIE  105 (670)
Q Consensus        26 ~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~  105 (670)
                      .|++++. +++.++.  ...+++|++|++++. .+..+|+.+..+++|+.|++++. .++.+   +.+..+++|++|++.
T Consensus         2 ~L~Ls~n-~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l---~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           2 VLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENV---DGVANLPRLQELLLC   73 (124)
T ss_dssp             EEECTTS-CCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC---GGGTTCSSCCEEECC
T ss_pred             EEEcCCC-CCCCCcc--cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-ccccc---CccccccccCeEECC
Confidence            4555554 4555543  356778888888765 46777766677888888888875 55555   446677888888877


Q ss_pred             ccc
Q 037562          106 SCD  108 (670)
Q Consensus       106 ~c~  108 (670)
                      +..
T Consensus        74 ~N~   76 (124)
T d1dcea3          74 NNR   76 (124)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.6e-05  Score=71.34  Aligned_cols=161  Identities=16%  Similarity=0.110  Sum_probs=98.4

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      ++++|++++. +++.++......+++|++|+++++.....++.. +..+++++++.+.+|.++.... +..+..+++|++
T Consensus        30 ~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~-~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC-TTSEECCTTCCE
T ss_pred             CCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc-cccccccccccc
Confidence            7899999876 578777654567899999999988766555443 3457788888888888887652 344577889999


Q ss_pred             eccccccccceeccccc---------------cccccccccc----cccccccccccccccccccCCcccCCCCccEEeE
Q 037562          102 MEIESCDKITEIVLVDD---------------VVAQDEVITF----RELKELNLLQMQNLISFCSGNCAFTFPSLEILVV  162 (670)
Q Consensus       102 L~i~~c~~l~~~~~~~~---------------~~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i  162 (670)
                      |.+.++. +........               .........|    +.++.|.+.+ .+++.+...  ....+++.++..
T Consensus       108 l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~--~~~~~~l~~~~~  183 (242)
T d1xwdc1         108 LLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNC--AFNGTQLDELNL  183 (242)
T ss_dssp             EEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT--TTTTCCEEEEEC
T ss_pred             cccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccc--cccchhhhcccc
Confidence            9888763 322211000               0000001112    1333344332 334444332  334566777766


Q ss_pred             ecCCCccccccCC-cCCCCccceeeeec
Q 037562          163 NYCPNMKIFSGGE-LSTPNLHKVQLSRW  189 (670)
Q Consensus       163 ~~C~~l~~~p~~~-~~~~~L~~l~i~~~  189 (670)
                      .++.+++.+|.+. ..+++|+.|++++.
T Consensus       184 l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         184 SDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             TTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             ccccccccccHHHhcCCCCCCEEECCCC
Confidence            6777788787654 45788888877543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.4e-06  Score=70.87  Aligned_cols=82  Identities=13%  Similarity=0.118  Sum_probs=63.7

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccc
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR  100 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~  100 (670)
                      .+|+.|+++++ +++.+..  ...+++|++|++++|. +..+++.. ..+++|++|++.++. ++++.....+..+|+|+
T Consensus        41 ~~L~~L~Ls~N-~i~~l~~--~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~  115 (162)
T d1a9na_          41 DQFDAIDFSDN-EIRKLDG--FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLT  115 (162)
T ss_dssp             TCCSEEECCSS-CCCEECC--CCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCC
T ss_pred             ccCCEEECCCC-CCCccCC--cccCcchhhhhccccc-ccCCCccccccccccccceecccc-ccccccccccccccccc
Confidence            48999999987 5777643  4678999999999996 77777654 468999999999984 44432224567889999


Q ss_pred             eecccccc
Q 037562          101 YMEIESCD  108 (670)
Q Consensus       101 ~L~i~~c~  108 (670)
                      +|++.+|+
T Consensus       116 ~L~l~~N~  123 (162)
T d1a9na_         116 YLCILRNP  123 (162)
T ss_dssp             EEECCSSG
T ss_pred             hhhcCCCc
Confidence            99999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.78  E-value=5.7e-07  Score=79.53  Aligned_cols=126  Identities=13%  Similarity=0.109  Sum_probs=89.5

Q ss_pred             CCCcEEEEec-CCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccc
Q 037562           47 NNLVILCVHC-CDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEV  125 (670)
Q Consensus        47 ~~L~~L~i~~-c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~  125 (670)
                      ..++.+.+.+ .+.++.++.....+++|++|+++++ +++.+   +.+..+++|++|++++|. ++.+..        ..
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i---~~l~~l~~L~~L~Ls~N~-i~~i~~--------~~   89 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKI---SSLSGMENLRILSLGRNL-IKKIEN--------LD   89 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE-EESCC---CCHHHHTTCCEEECCEEE-ECSCSS--------HH
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECccc-CCCCc---ccccCCccccChhhcccc-cccccc--------cc
Confidence            3455666654 4556666666677999999999987 47766   457789999999999884 544421        11


Q ss_pred             ccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc--CCcCCCCccceeeeecc
Q 037562          126 ITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG--GELSTPNLHKVQLSRWD  190 (670)
Q Consensus       126 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~--~~~~~~~L~~l~i~~~~  190 (670)
                      ..+++|+.|.+.++ .++.+..   ...+++|+.|+++++ ++..++.  ....+|+|+.|++++.+
T Consensus        90 ~~~~~L~~L~l~~N-~i~~l~~---~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          90 AVADTLEELWISYN-QIASLSG---IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHCCEEECSEE-ECCCHHH---HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccc-ccccccc---ccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            24678999999886 5666532   456789999999987 3555553  34568999999997643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.72  E-value=4.4e-05  Score=72.82  Aligned_cols=60  Identities=15%  Similarity=0.145  Sum_probs=32.1

Q ss_pred             CCcEEEEecCC--CCccccCCCccccccceeeecccccccccccchhhhcccccceecccccc
Q 037562           48 NLVILCVHCCD--HLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCD  108 (670)
Q Consensus        48 ~L~~L~i~~c~--~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  108 (670)
                      .++.|++.++.  ....+|..++.+++|++|++++|.++..-+ |+.+.+|++|++|+++++.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~i-P~~i~~L~~L~~L~Ls~N~  112 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTN  112 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEEC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccc-ccccccccccchhhhcccc
Confidence            45566666552  112345555566666666666665555222 2334556666666666553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00018  Score=65.46  Aligned_cols=138  Identities=14%  Similarity=0.199  Sum_probs=89.5

Q ss_pred             CcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562           34 RLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE  112 (670)
Q Consensus        34 ~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  112 (670)
                      +++++|..   .++++++|++++. .+..++.. +..+++|++|+++++.....+ +...+..++++++|.+.+|.++..
T Consensus        19 ~l~~iP~~---l~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i-~~~~f~~l~~l~~l~~~~~n~l~~   93 (242)
T d1xwdc1          19 KVTEIPSD---LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLY   93 (242)
T ss_dssp             SCSSCCSC---SCSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEE-CSSSEESCTTCCEEEEECCTTCCE
T ss_pred             CCCCcCCC---CCCCCCEEECcCC-cCCccChhHhhccchhhhhhhcccccccee-eccccccccccccccccccccccc
Confidence            57777753   3468999999987 47788765 467899999999999776543 334456789999999988888766


Q ss_pred             eccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEec--CCCccccccCCc-C-CCCccceeee
Q 037562          113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNY--CPNMKIFSGGEL-S-TPNLHKVQLS  187 (670)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~--C~~l~~~p~~~~-~-~~~L~~l~i~  187 (670)
                      +..       .....+++|+.|.+.++ +++..+.   ...+++++.+.+..  ..++..++.... . .+.++.|.++
T Consensus        94 ~~~-------~~~~~l~~L~~l~l~~~-~l~~~~~---~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~  161 (242)
T d1xwdc1          94 INP-------EAFQNLPNLQYLLISNT-GIKHLPD---VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  161 (242)
T ss_dssp             ECT-------TSEECCTTCCEEEEESC-CCCSCCC---CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             ccc-------ccccccccccccccchh-hhccccc---ccccccccccccccccccccccccccccccccccceeeecc
Confidence            532       12345788888888875 4554433   22345555555433  334555554322 1 2345555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.00015  Score=57.92  Aligned_cols=81  Identities=16%  Similarity=0.152  Sum_probs=61.9

Q ss_pred             ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562           22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY  101 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  101 (670)
                      .+|++|++++. +++.++.. ...+++|+.|++++. .+..++ ....+++|++|++.++ +++.+.....+..+++|+.
T Consensus        20 ~~L~~L~ls~N-~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          20 LLVTHLDLSHN-RLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVL   94 (124)
T ss_dssp             TTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCE
T ss_pred             CCCCEEECCCC-ccCcchhh-hhhhhcccccccccc-cccccC-ccccccccCeEECCCC-ccCCCCCchhhcCCCCCCE
Confidence            38999999865 68888754 467999999999986 566665 4678999999999987 4444422245678899999


Q ss_pred             eccccc
Q 037562          102 MEIESC  107 (670)
Q Consensus       102 L~i~~c  107 (670)
                      |++++-
T Consensus        95 L~l~~N  100 (124)
T d1dcea3          95 LNLQGN  100 (124)
T ss_dssp             EECTTS
T ss_pred             EECCCC
Confidence            998763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.47  E-value=0.00019  Score=62.53  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             CccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccccccccccccc
Q 037562           60 LINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQM  139 (670)
Q Consensus        60 l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  139 (670)
                      |.++|..+  ++++++|++++. .++.......+..+++|++|++.+..- ..++       ......+++|+.|++++.
T Consensus        20 L~~iP~~l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i-~~~~-------~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          20 LKEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQL-TGIE-------PNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             CSSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCC-CCBC-------TTTTTTCTTCCEEECCSC
T ss_pred             cCccCCCC--CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccccc-cccc-------ccccccccccceeeeccc
Confidence            44444432  246666666654 232222233445666777777665542 2221       112234666777776654


Q ss_pred             ccccccccCCcccCCCCccEEeEecCCCccccccCC-cCCCCccceeeee
Q 037562          140 QNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE-LSTPNLHKVQLSR  188 (670)
Q Consensus       140 ~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~i~~  188 (670)
                       +++.++.+ ....+++|++|++.+. +|+.+|.+. ...++|++|++++
T Consensus        89 -~l~~l~~~-~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          89 -KIKEISNK-MFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -CCCEECSS-SSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTT
T ss_pred             -cccccCHH-HHhCCCcccccccCCc-cccccCHHHhcCCcccccccccc
Confidence             55555543 2445788888888876 577777654 4678888888754

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.15  E-value=7.6e-05  Score=66.46  Aligned_cols=183  Identities=15%  Similarity=0.088  Sum_probs=121.5

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 037562          288 EFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGA  367 (670)
Q Consensus       288 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  367 (670)
                      .+|.++. .+++..|++                  .-.+..|..+++++++.||..++..|.                  
T Consensus        49 ~~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------   91 (233)
T d1lrva_          49 QYLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRLP------------------   91 (233)
T ss_dssp             GGTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred             HHhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHcC------------------
Confidence            4677777 688876653                  123667888999999999998875431                  


Q ss_pred             hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 037562          368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI  447 (670)
Q Consensus       368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  447 (670)
                      ...+..++ .+.+..|+..++..+   .              .+.|..++.++++.|+..++..   +            
T Consensus        92 ~~~L~~L~-~D~d~~VR~~aa~~l---~--------------~~~L~~Ll~D~d~~VR~~aa~~---~------------  138 (233)
T d1lrva_          92 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQR---I------------  138 (233)
T ss_dssp             SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH---S------------
T ss_pred             HHHHHHHh-cCCChhHHHHHHhcc---C--------------HHHHHHHhcCCCHHHHHHHHhc---c------------
Confidence            12233444 778888988777543   1              1346677888899999877643   1            


Q ss_pred             HcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHH
Q 037562          448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQ  527 (670)
Q Consensus       448 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~  527 (670)
                         ....+..++.++++.|+..++..+                  ..+.+..++++. ++.||..++..++         
T Consensus       139 ---~~~~L~~L~~D~d~~VR~~aA~~~------------------~~~~L~~l~~D~-d~~VR~~aa~~L~---------  187 (233)
T d1lrva_         139 ---PPGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDP-EPEVRRIVASRLR---------  187 (233)
T ss_dssp             ---CGGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCS-SHHHHHHHHHHCC---------
T ss_pred             ---chhHHHHHhcCCCHHHHHHHHHhc------------------CHHHHHHHccCC-CHHHHHHHHHhcC---------
Confidence               123455677788888887766421                  134566677777 8899988776432         


Q ss_pred             HHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHH
Q 037562          528 IQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE  600 (670)
Q Consensus       528 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  600 (670)
                               .+.|..++.+++..|+..++..                    +.+.++..|.+++++|+..+..
T Consensus       188 ---------~~~L~~l~~D~d~~VR~aaae~--------------------~~~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         188 ---------GDDLLELLHDPDWTVRLAAVEH--------------------ASLEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             ---------GGGGGGGGGCSSHHHHHHHHHH--------------------SCHHHHHHCCCCCHHHHHHHHC
T ss_pred             ---------cHHHHHHHhCCCHHHHHHHHHh--------------------ccHHHHHHhCCCCHHHHHHHHH
Confidence                     1345667778888888877631                    2234566778888998887753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.14  E-value=0.00049  Score=59.82  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=70.9

Q ss_pred             CcccccccccccCCCCcEEEEecCCCCcc-ccC-CCccccccceeeecccccccccccchhhhcccccceeccccccccc
Q 037562           34 RLENILIEESSVMNNLVILCVHCCDHLIN-LVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKIT  111 (670)
Q Consensus        34 ~l~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~  111 (670)
                      +|+.+|..   -.+++++|++++.. +.. ++. .+..+++|++|++++..-. .+ +......+++|++|++++. .++
T Consensus        19 ~L~~iP~~---lp~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~-~~~~~~~~~~L~~L~Ls~N-~l~   91 (192)
T d1w8aa_          19 GLKEIPRD---IPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLT-GI-EPNAFEGASHIQELQLGEN-KIK   91 (192)
T ss_dssp             CCSSCCSC---CCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCC-CB-CTTTTTTCTTCCEEECCSC-CCC
T ss_pred             CcCccCCC---CCCCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccc-cc-cccccccccccceeeeccc-ccc
Confidence            46666642   23678888887764 433 322 2355778888888776433 22 2344566788888888776 355


Q ss_pred             eeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecC
Q 037562          112 EIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYC  165 (670)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C  165 (670)
                      .+..       .....+++|+.|.|.+. +|+.++.+ ....+++|++|++.+-
T Consensus        92 ~l~~-------~~F~~l~~L~~L~L~~N-~l~~i~~~-~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          92 EISN-------KMFLGLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EECS-------SSSTTCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTC
T ss_pred             ccCH-------HHHhCCCcccccccCCc-cccccCHH-HhcCCccccccccccc
Confidence            5532       12235778888888774 46666554 2445778888887654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.017  Score=52.15  Aligned_cols=204  Identities=12%  Similarity=0.088  Sum_probs=149.2

Q ss_pred             HHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh----hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562          444 QAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ----TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN  519 (670)
Q Consensus       444 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~  519 (670)
                      +.+...+.+..++..|..-+.+.|..++.+.+++.......    ...+...  .+.+..++..-.++++...+...|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            44666789999999999999999999999999998755432    3444422  23444444333255666666666766


Q ss_pred             hhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC---CcHHHHhhccCCChHHHH
Q 037562          520 ITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREG---CVKPLCDLLLCADPKIVT  596 (670)
Q Consensus       520 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~  596 (670)
                      ++.. +.....++....+..+.+..+.++.++...|..++..+... .+.....++..+   .+.....++.+++.-++.
T Consensus       141 cik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh-CHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            6554 67777888888899999999999999999999999998876 455555555433   466677889999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562          597 VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW  661 (670)
Q Consensus       597 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~  661 (670)
                      .+++.|+.++-+..+..          .....+....-+..+-.|+.+++..++-.|-.+..-|.
T Consensus       219 qSlKLLgelLldr~N~~----------vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFV  273 (330)
T d1upka_         219 QSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV  273 (330)
T ss_dssp             HHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHH----------HHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhh
Confidence            99999999997655432          23344545555677778888999999988887766553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0007  Score=56.33  Aligned_cols=58  Identities=19%  Similarity=0.258  Sum_probs=36.3

Q ss_pred             ccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562          128 FRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR  188 (670)
Q Consensus       128 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~  188 (670)
                      +++|+.|.+.+. +|+.+..+ ....+++|+.|++++. +++++|.+.....+|++|++++
T Consensus        55 l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          55 LGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             CCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCS
T ss_pred             ccccCcceeecc-ccCCcccc-cccccccccceeccCC-CCcccChhhhccccccccccCC
Confidence            455555555543 34444432 2345677888888764 4778888776666788888754

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.08  E-value=0.039  Score=51.70  Aligned_cols=207  Identities=17%  Similarity=0.129  Sum_probs=124.6

Q ss_pred             ChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc---cCChhHHHHHHHHHHhhhc---
Q 037562          325 AVPIFVKLLASPS--VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE---NANLSMLRTATWTLFNFCR---  396 (670)
Q Consensus       325 ~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~---~~~~~~~~~a~~~L~~l~~---  396 (670)
                      .+..+.+.+.+..  .......+..+.....  |. .+      .+..+..++..   ..++.++..+..+++++..   
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--Pt-~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--AT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--CC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--CC-HH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            4556667665533  2333334444443322  22 22      24445555532   2456677777766665553   


Q ss_pred             -CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-------Cccchh
Q 037562          397 -GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-------SSSVLT  468 (670)
Q Consensus       397 -~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~v~~  468 (670)
                       ..+.........+...+.+.....+.+-+..++.+|+|+..  +         +.++.+..++...       ...+|.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence             33333333445555566666667788888888999999863  2         3457777777542       235899


Q ss_pred             HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC-CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-c
Q 037562          469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN-HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-N  546 (670)
Q Consensus       469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~  546 (670)
                      .|++++.+++...+....        +.+..++.+. .++++|..|..++... ..+..         .+..+...+. .
T Consensus       229 aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E  290 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence            999999999876554332        3344554433 2788999888888654 22222         2344555555 5


Q ss_pred             CChhHHHHHHHHHHHhcCCCCHH
Q 037562          547 TEFDTKKEAAWAISNATKFGTHE  569 (670)
Q Consensus       547 ~~~~v~~~a~~aL~~l~~~~~~~  569 (670)
                      ++.+|...+...|.+++....|.
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcc
Confidence            67889988899999988865443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.018  Score=51.89  Aligned_cols=240  Identities=11%  Similarity=0.131  Sum_probs=164.0

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH----HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562          320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR----DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC  395 (670)
Q Consensus       320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~----~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  395 (670)
                      +...+.+..++..|..-+-+.|..+..++.++.......+    +.+..  --..+..++..-.++++.-.+...|....
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHHHHH
Confidence            4446778899999998889999999999999986443322    33433  12444444544456677667777777777


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc---CCHHHHHHhcCCCCccchhHHHH
Q 037562          396 RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLGHSSSSVLTPALR  472 (670)
Q Consensus       396 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~~  472 (670)
                      ....-.........+-.+.+.++.++-++...|..++..+..........++..   .++...-.+|.+++--++.+++.
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK  222 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  222 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            775444455556677778888888999999999999999887766655555554   46777888999999999999999


Q ss_pred             HHHHhhcCCchh---hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC---CHHHHHHHHh--cCChHHHHHHh
Q 037562          473 TIRNIVKGDDFQ---TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG---NREQIQAVID--SGLIGPIVNLL  544 (670)
Q Consensus       473 ~L~~l~~~~~~~---~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~--~~~i~~L~~ll  544 (670)
                      .|+.+.......   .+.+-+..-+..++.+|++. +..++.+|..++.-+.+.   +++....+..  ..++..|-+..
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~  301 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ  301 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCC
Confidence            999998643322   22333445688899999999 999999999999988773   3333333332  22344444433


Q ss_pred             hc--CChhHHHHHHHHHHHh
Q 037562          545 QN--TEFDTKKEAAWAISNA  562 (670)
Q Consensus       545 ~~--~~~~v~~~a~~aL~~l  562 (670)
                      .+  .|.....+=...+..+
T Consensus       302 ~d~~~DeqF~~EK~~lI~~I  321 (330)
T d1upka_         302 NDRTEDEQFNDEKTYLVKQI  321 (330)
T ss_dssp             TTC-CCSHHHHHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHH
Confidence            32  3444544444444333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.76  E-value=0.0029  Score=60.63  Aligned_cols=93  Identities=20%  Similarity=0.204  Sum_probs=63.1

Q ss_pred             cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562           23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM  102 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  102 (670)
                      +++.|+++++ +|+.+|.    .+++|++|+++ |.+++.+|..   +++|++|++.++ +++.+   +.  -.++|++|
T Consensus        39 ~l~~LdLs~~-~L~~lp~----~~~~L~~L~Ls-~N~l~~lp~~---~~~L~~L~l~~n-~l~~l---~~--lp~~L~~L  103 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPE----LPPHLESLVAS-CNSLTELPEL---PQSLKSLLVDNN-NLKAL---SD--LPPLLEYL  103 (353)
T ss_dssp             TCSEEECTTS-CCSCCCS----CCTTCSEEECC-SSCCSSCCCC---CTTCCEEECCSS-CCSCC---CS--CCTTCCEE
T ss_pred             CCCEEEeCCC-CCCCCCC----CCCCCCEEECC-CCCCcccccc---hhhhhhhhhhhc-ccchh---hh--hccccccc
Confidence            6889998887 4777774    35789999986 4578877653   568899998876 34443   11  12468999


Q ss_pred             ccccccccceeccccccccccccccccccccccccccc
Q 037562          103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQ  140 (670)
Q Consensus       103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  140 (670)
                      +++++. ++.++.         ...+++|+.|.+.++.
T Consensus       104 ~L~~n~-l~~lp~---------~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         104 GVSNNQ-LEKLPE---------LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             ECCSSC-CSSCCC---------CTTCTTCCEEECCSSC
T ss_pred             cccccc-cccccc---------hhhhccceeecccccc
Confidence            998774 555431         1246778888876654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.002  Score=53.43  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=17.0

Q ss_pred             cccccceeeecccccccccccchhhhcccccceeccccc
Q 037562           69 SFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC  107 (670)
Q Consensus        69 ~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  107 (670)
                      .+++|++|+|.+...++.+. ...+..+++|+.|++++.
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS   66 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS
T ss_pred             CccccCeeecCCCccccccC-chhhccccccCcceeecc
Confidence            34445555554444444431 122334555555555444

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.54  E-value=0.13  Score=47.97  Aligned_cols=265  Identities=12%  Similarity=0.091  Sum_probs=151.6

Q ss_pred             hHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCc----HHHHHHc
Q 037562          205 IKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPP----IDEVIQS  280 (670)
Q Consensus       205 i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~  280 (670)
                      ++..+.+.+..++++....+..+.        ...+-.+++.++.-+.+........+    ... ...    .+.+...
T Consensus        18 ~~~~~~~~l~~L~~~~~~~v~~~~--------~~kF~~Lv~~lR~~~~e~l~~v~~~~----~~~-~~~r~~~lDal~~~   84 (336)
T d1lsha1          18 LESEIHTVLKHLVENNQLSVHEDA--------PAKFLRLTAFLRNVDAGVLQSIWHKL----HQQ-KDYRRWILDAVPAM   84 (336)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCCTTH--------HHHHHHHHHHHTTSCHHHHHHHHHHH----TTS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccCcch--------HHHHHHHHHHHHCCCHHHHHHHHHHH----hcC-hhHHHHHHHHHHHh
Confidence            444455556666666655554332        24456777777754433332222221    111 111    1223333


Q ss_pred             C---CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhh-
Q 037562          281 G---VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----PSVDVRKQTVWALGNVA-  352 (670)
Q Consensus       281 g---~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~-  352 (670)
                      |   .+..+.+++.+.+- ... .|...+..++.......      ..+..+..++.+    .++.++..+.-+++++. 
T Consensus        85 GT~~a~~~i~~~I~~~~l-s~~-ea~~~l~~l~~~~~Pt~------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~  156 (336)
T d1lsha1          85 ATSEALLFLKRTLASEQL-TSA-EATQIVASTLSNQQATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVF  156 (336)
T ss_dssp             CSHHHHHHHHHHHHTTCS-CHH-HHHHHHHHHHHTCCCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCC-CHH-HHHHHHHHHhccCCCCH------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHH
Confidence            4   35566777766552 222 23333333333111111      134566667765    57888888888888776 


Q ss_pred             ---CCCchhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC------
Q 037562          353 ---GDSPRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN------  420 (670)
Q Consensus       353 ---~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~------  420 (670)
                         ...+.+...     .++.+...+.   +..+.+-+..++.+|+|+..          ...++.+.+++...      
T Consensus       157 ~~c~~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~  221 (336)
T d1lsha1         157 RYCANTVSCPDE-----LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDE  221 (336)
T ss_dssp             HHHTTCSSCCGG-----GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCC
T ss_pred             HHhcCCCCCcHH-----HHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhccccccccc
Confidence               232222221     2344444432   34555666678899999864          34678888887532      


Q ss_pred             -ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHH
Q 037562          421 -DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYF  497 (670)
Q Consensus       421 -~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L  497 (670)
                       ...++..|++++.+++...+...+        +.+.++..+  .+.++|..|+.++...   +|..       ..+..+
T Consensus       222 ~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~i  283 (336)
T d1lsha1         222 YSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMV  283 (336)
T ss_dssp             SCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHH
T ss_pred             ccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHH
Confidence             467999999999999877654433        344455444  4567888888777542   2221       135567


Q ss_pred             HHhhccCCchhHHHHHHHHHHHhhcC
Q 037562          498 LDMLVHNHEESIKKEVSWIISNITCG  523 (670)
Q Consensus       498 ~~~l~~~~~~~v~~~a~~~L~~l~~~  523 (670)
                      ...+..+++..|+......|.+++..
T Consensus       284 ~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         284 AVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            77787766888999988899998773

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.41  E-value=0.0028  Score=60.74  Aligned_cols=69  Identities=16%  Similarity=0.189  Sum_probs=42.0

Q ss_pred             ccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCC
Q 037562           96 LVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE  175 (670)
Q Consensus        96 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~  175 (670)
                      +++|++|++++|. +++++           ..+|+|+.|+++++ ++++++.     .+++|++|++++|+ ++++|.. 
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp-----------~~~~~L~~L~L~~N-~L~~l~~-----~~~~L~~L~L~~N~-L~~lp~~-  342 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELP-----------ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDI-  342 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCC-
T ss_pred             CCCCCEEECCCCc-cCccc-----------cccCCCCEEECCCC-cCCcccc-----ccCCCCEEECcCCc-CCCCCcc-
Confidence            4667777777663 44443           13667777777655 4655543     24567777777775 7777752 


Q ss_pred             cCCCCccceee
Q 037562          176 LSTPNLHKVQL  186 (670)
Q Consensus       176 ~~~~~L~~l~i  186 (670)
                        .++|+.|++
T Consensus       343 --~~~L~~L~~  351 (353)
T d1jl5a_         343 --PESVEDLRM  351 (353)
T ss_dssp             --CTTCCEEEC
T ss_pred             --ccccCeeEC
Confidence              346666654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.39  E-value=0.002  Score=56.96  Aligned_cols=154  Identities=10%  Similarity=0.088  Sum_probs=86.7

Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562          452 YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV  531 (670)
Q Consensus       452 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  531 (670)
                      +..|..+++++++.||..|+..|+                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456778888999999988875431                  23455566666 7777776655321             


Q ss_pred             HhcCChHHHHHHhhcCChhHHHHHHHH-----HHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHH---
Q 037562          532 IDSGLIGPIVNLLQNTEFDTKKEAAWA-----ISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE---  603 (670)
Q Consensus       532 ~~~~~i~~L~~ll~~~~~~v~~~a~~a-----L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~---  603 (670)
                           .+.|..++.++++.|+..++..     |..+....++..+......-..+.|..+++++++.|+..+...+.   
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~  190 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDD  190 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGG
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCcHH
Confidence                 1233444555556666555443     222333334444444444455677888888888888887776542   


Q ss_pred             --HHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHH
Q 037562          604 --NILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVE  655 (670)
Q Consensus       604 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~  655 (670)
                        .++.+.            .-..+....+..+.+.+..| .+++++|+..|..
T Consensus       191 L~~l~~D~------------d~~VR~aaae~~~~~ll~~L-~D~d~~VR~aA~~  231 (233)
T d1lrva_         191 LLELLHDP------------DWTVRLAAVEHASLEALREL-DEPDPEVRLAIAG  231 (233)
T ss_dssp             GGGGGGCS------------SHHHHHHHHHHSCHHHHHHC-CCCCHHHHHHHHC
T ss_pred             HHHHHhCC------------CHHHHHHHHHhccHHHHHHh-CCCCHHHHHHHHH
Confidence              111111            11122233333344445544 6788888877653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.13  Score=55.99  Aligned_cols=299  Identities=11%  Similarity=0.088  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh----C--CCCHHHHHHHHHHHHHhhCCCchhHHHHHh----cC
Q 037562          297 QLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL----A--SPSVDVRKQTVWALGNVAGDSPRCRDLVLS----QG  366 (670)
Q Consensus       297 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL----~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~----~~  366 (670)
                      ..+..|...+..++...++.....+    .+.+...+    .  +.+...++.++.+++.++............    ..
T Consensus       376 ~~r~~a~~ll~~l~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~  451 (959)
T d1wa5c_         376 TRRRACTDFLKELKEKNEVLVTNIF----LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (959)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             cHHHHHHHHHHHHHHhccccchHHH----HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhh
Confidence            3566677777777663333221111    22222222    2  256677888888888776322110000000    00


Q ss_pred             C----hHHHHHHhc--ccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562          367 A----LIPLLAELN--ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN  440 (670)
Q Consensus       367 ~----i~~Ll~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  440 (670)
                      .    ...+...+.  ......++..++|+++..+....   ......+++.++..|.+++..++..|++++..+.....
T Consensus       452 ~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~  528 (959)
T d1wa5c_         452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (959)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhc
Confidence            1    111222222  22345678889999999887532   23456789999999999999999999999999875322


Q ss_pred             H-----------HHHHHHHcCCHHHHHHhcCCCCcc-----chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh----
Q 037562          441 D-----------KVQAVIEAGVYPRLVELLGHSSSS-----VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM----  500 (670)
Q Consensus       441 ~-----------~~~~~~~~~~i~~L~~lL~~~~~~-----v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~----  500 (670)
                      .           .....++ .++..+...+......     ....++.++..+.....+....... .+++.+...    
T Consensus       529 ~~~~~~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~  606 (959)
T d1wa5c_         529 SNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIM  606 (959)
T ss_dssp             CSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHH
T ss_pred             ccccchhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            1           1111111 2334455554433221     2334666666655322221111111 123333333    


Q ss_pred             hccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 037562          501 LVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG---THEQIKHLVR  576 (670)
Q Consensus       501 l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~~~l~~  576 (670)
                      .+++.++.....+..+++.+... +++....+ ...++|.+...+.....+....+...+..+....   .+...     
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----  680 (959)
T d1wa5c_         607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK-----  680 (959)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG-----
T ss_pred             hcCccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHH-----
Confidence            33443566677777777777652 33333333 3446788888887666666666766666554431   11110     


Q ss_pred             cCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562          577 EGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA  611 (670)
Q Consensus       577 ~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  611 (670)
                       ..++.++.............+...+.+++..+..
T Consensus       681 -~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~  714 (959)
T d1wa5c_         681 -PLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSS  714 (959)
T ss_dssp             -GGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGG
T ss_pred             -HHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHH
Confidence             1223333323233333455666667766665544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.27  Score=53.39  Aligned_cols=181  Identities=8%  Similarity=0.102  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--------HHHHHh--c
Q 037562          296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC--------RDLVLS--Q  365 (670)
Q Consensus       296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~i~~--~  365 (670)
                      +.++..++++++..+.....  ...  ..+++.++..|.+++..++..|++++..++......        .+.+..  .
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            67999999999998763221  122  246889999999999999999999999998532110        000000  0


Q ss_pred             CChHHHHHHhcccCChh----HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc----c-CChhHHHHHHHHHHHhc
Q 037562          366 GALIPLLAELNENANLS----MLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR----S-NDEEVLTDACWALSYLS  436 (670)
Q Consensus       366 ~~i~~Ll~~l~~~~~~~----~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----~-~~~~v~~~al~~L~~l~  436 (670)
                      ..+..++..+.......    ....+..++..+..............+++.+...+.    + .++.....+..++..+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            12344455543322211    112355555555544333333334455555555443    2 24667777777777776


Q ss_pred             cCC-hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 037562          437 DGT-NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD  481 (670)
Q Consensus       437 ~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  481 (670)
                      ... ++... .+...+++.+...++.........++..+..+....
T Consensus       628 ~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         628 NYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            432 22223 233466788888887777777888888887776543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.87  E-value=0.0023  Score=61.22  Aligned_cols=37  Identities=19%  Similarity=0.128  Sum_probs=19.8

Q ss_pred             CCCCccEEeEecCCC----ccccccCCcCCCCccceeeeec
Q 037562          153 TFPSLEILVVNYCPN----MKIFSGGELSTPNLHKVQLSRW  189 (670)
Q Consensus       153 ~~~~L~~L~i~~C~~----l~~~p~~~~~~~~L~~l~i~~~  189 (670)
                      .+++|+.|++++++-    .+.+.......++|++|+++++
T Consensus       213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             chhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            456677777766641    1122233334566777766544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.39  E-value=1.2  Score=41.28  Aligned_cols=161  Identities=12%  Similarity=0.087  Sum_probs=108.7

Q ss_pred             hhhHHHHhCCChHHHHHhhcc---------C-CchhHHHHHHHHHHHhhcCCHHHHHHHH-hcCChHHHHHHhhcCChhH
Q 037562          483 FQTQCIINCGALPYFLDMLVH---------N-HEESIKKEVSWIISNITCGNREQIQAVI-DSGLIGPIVNLLQNTEFDT  551 (670)
Q Consensus       483 ~~~~~l~~~~~~~~L~~~l~~---------~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v  551 (670)
                      ...+.+ ..+|+..|+.+|..         . .+.....++..++..+... ......++ ..+++..+...+.++...+
T Consensus        37 sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~t  114 (343)
T d2bnxa1          37 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  114 (343)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             hHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHH
Confidence            444444 34566666666521         1 1345677888888888654 44444544 5677899999999999999


Q ss_pred             HHHHHHHHHHhcCCCC-HHH----------HHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562          552 KKEAAWAISNATKFGT-HEQ----------IKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKVGVAEMNTGTAV  619 (670)
Q Consensus       552 ~~~a~~aL~~l~~~~~-~~~----------~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  619 (670)
                      +..|...|..++.... +..          ....-+.+-...+++.++.. +.+.+..++..+..++...+...      
T Consensus       115 r~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~------  188 (343)
T d2bnxa1         115 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------  188 (343)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH------
T ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHH------
Confidence            9999999988875321 111          11223456678888877654 56787788877777776544332      


Q ss_pred             CCccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 037562          620 GDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK  652 (670)
Q Consensus       620 ~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  652 (670)
                       .....+..|..+|..+.+..+....++++...
T Consensus       189 -~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         189 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             -HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             -HHHHHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence             23446778889999999999988888887654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.013  Score=58.10  Aligned_cols=57  Identities=11%  Similarity=0.214  Sum_probs=29.1

Q ss_pred             cccEEEeccCcCccccccc-ccccCCCCcEEEEecCCCCcc-----ccCCCccccccceeeeccc
Q 037562           23 EVKISEAYNCYRLENILIE-ESSVMNNLVILCVHCCDHLIN-----LVPSSTSFQNLTNLVVSHC   81 (670)
Q Consensus        23 ~L~~L~i~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l~~-----~~~~~~~~~~L~~L~i~~c   81 (670)
                      +|++|+| .|.++...... ....+++|++|++.+|. +..     +.......++|++|+++++
T Consensus         3 ~l~~ld~-~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1           3 DIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN   65 (460)
T ss_dssp             EEEEEEE-ESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred             CCCEEEe-eCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC
Confidence            4666776 46566543311 12445666777777663 321     1111223456666666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.012  Score=58.34  Aligned_cols=58  Identities=17%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             CCcEEEEecCCCCccc--cCCCccccccceeeeccccccccccc---chhhhcccccceeccccc
Q 037562           48 NLVILCVHCCDHLINL--VPSSTSFQNLTNLVVSHCKRLKIVLT---SSIAKTLVRLRYMEIESC  107 (670)
Q Consensus        48 ~L~~L~i~~c~~l~~~--~~~~~~~~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c  107 (670)
                      +|++|++ .|.++...  ..-...+++|+.|++.+|. ++....   ...+..+|+|++|+++++
T Consensus         3 ~l~~ld~-~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1           3 DIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN   65 (460)
T ss_dssp             EEEEEEE-ESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred             CCCEEEe-eCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC
Confidence            5667777 55555432  1112345677777777773 432110   112345667777777665

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.51  Score=37.37  Aligned_cols=74  Identities=11%  Similarity=-0.061  Sum_probs=61.7

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC------CChHHHHHHHHHHHHHHHhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC------ADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++..+..-+.++++.++..|+..|-.+..++.+.+...+...+.+..|+.++..      .+..|+..++..+.......
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            345566667889999999999999999999889998888888889999998853      56689999999998876543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.69  E-value=5.6  Score=36.39  Aligned_cols=125  Identities=9%  Similarity=0.080  Sum_probs=83.9

Q ss_pred             HHHHHHcCCHHHHHHhhc----C-----C-CCHHHHHHHHHHHHHHcCCChhhHHH-HHhCCChHHHHHhhCCCCHHHHH
Q 037562          274 IDEVIQSGVVPRFVEFLM----R-----Q-DYPQLQFKAAWALTNIASGTSENTKV-VIDHGAVPIFVKLLASPSVDVRK  342 (670)
Q Consensus       274 ~~~~~~~g~l~~L~~ll~----~-----~-~~~~v~~~a~~~L~~l~~~~~~~~~~-i~~~~~i~~L~~lL~~~~~~v~~  342 (670)
                      ++.+ ..+++..|+.+|.    .     . .....+..+++||..+.. +....+. +-..+++..+...+.++.+.++.
T Consensus        39 v~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~  116 (343)
T d2bnxa1          39 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMI  116 (343)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHH
T ss_pred             HHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCCchHHHH
Confidence            3444 3445666666552    1     1 114688899999999988 4454444 45668899999999999999999


Q ss_pred             HHHHHHHHhhCCC--chhHHHH----------HhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC
Q 037562          343 QTVWALGNVAGDS--PRCRDLV----------LSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ  400 (670)
Q Consensus       343 ~a~~~L~~l~~~~--~~~~~~i----------~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~  400 (670)
                      .|+..|..+|...  +.....+          .+.+-+.+++..+....+.+.+..++..+..+....+.
T Consensus       117 ~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         117 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCccc
Confidence            9999999998532  2222222          23455777888886666667777777667667766443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.023  Score=47.00  Aligned_cols=84  Identities=23%  Similarity=0.148  Sum_probs=43.9

Q ss_pred             cccccceeeeccccccccccc-chhhhcccccceeccccccccceecccccccccccccccccccccccccccccccccc
Q 037562           69 SFQNLTNLVVSHCKRLKIVLT-SSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCS  147 (670)
Q Consensus        69 ~~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  147 (670)
                      .+++|+.|+++++ +++.+.+ ......+++|+.|++++.. ++++..       .....+++|+.|.+.+-|--..++.
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~-------l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE-------LDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGG-------HHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCc-cccchh-------hhhhhccccceeecCCCCcCcCccc
Confidence            4677888888777 3444321 1234567888888887643 333211       0112345677777777553322221


Q ss_pred             C-----CcccCCCCccEEe
Q 037562          148 G-----NCAFTFPSLEILV  161 (670)
Q Consensus       148 ~-----~~~~~~~~L~~L~  161 (670)
                      .     .....+|+|+.|+
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence            1     0123466666664

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=1.4  Score=40.34  Aligned_cols=217  Identities=12%  Similarity=0.051  Sum_probs=114.9

Q ss_pred             CCCCHHHHHHHHHHHHHHcC---CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q 037562          292 RQDYPQLQFKAAWALTNIAS---GTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGAL  368 (670)
Q Consensus       292 ~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  368 (670)
                      ++.|+.++. +-..+..+..   -++...+..++...+..++.++.++|+.-|......|.++-+.....|..+.. ...
T Consensus        99 e~sWpHL~l-VY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~  176 (343)
T d2jaka1          99 EAAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QIN  176 (343)
T ss_dssp             CTTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHH
T ss_pred             CCCCchHHH-HHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHH
Confidence            345555444 3334444433   12333344455566788999999999999999999999987666666665543 234


Q ss_pred             HHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCC-hhHHHHHHHHHHHhccCChHHHHHH
Q 037562          369 IPLLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSND-EEVLTDACWALSYLSDGTNDKVQAV  446 (670)
Q Consensus       369 ~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~-~~v~~~al~~L~~l~~~~~~~~~~~  446 (670)
                      ..+.+.+..+....-...++.++..+..+-... ......-....++.+.+... ...-.....++......++.....+
T Consensus       177 ~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~  256 (343)
T d2jaka1         177 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV  256 (343)
T ss_dssp             HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            455666645555556667777777777665332 33333344445555555443 2222233334433333334333322


Q ss_pred             HHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch-hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHH
Q 037562          447 IEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF-QTQCIINCGALPYFLDMLVHNHEESIKKEVSWII  517 (670)
Q Consensus       447 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L  517 (670)
                      +     ..+++.=-..+..-...-+.-+..+....+. ....+. ..++..+...+.+. +..|.+.|....
T Consensus       257 i-----~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~-~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         257 V-----MALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             H-----HHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             H-----HHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            2     2222222223333344444555555543322 222222 23566777777777 777777665443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.73  E-value=0.015  Score=55.31  Aligned_cols=36  Identities=14%  Similarity=0.010  Sum_probs=20.7

Q ss_pred             ccccEEEeccCcCccccc----ccccccCCCCcEEEEecCC
Q 037562           22 MEVKISEAYNCYRLENIL----IEESSVMNNLVILCVHCCD   58 (670)
Q Consensus        22 ~~L~~L~i~~c~~l~~~~----~~~~~~~~~L~~L~i~~c~   58 (670)
                      .+|+.|++++|. +....    .......++|++|.+++|.
T Consensus        93 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          93 PKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             CCcccccccccc-cccccccchhhhhcccccchheeccccc
Confidence            367777777663 22211    1112456788888887764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=0.12  Score=42.39  Aligned_cols=84  Identities=18%  Similarity=0.075  Sum_probs=43.2

Q ss_pred             hcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc
Q 037562           94 KTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG  173 (670)
Q Consensus        94 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~  173 (670)
                      ..+++|++|+++++. ++.+..     .......+|+|+.|.+++ ..++++... .....+.|+.|.+.+-|--..+..
T Consensus        62 ~~~~~L~~L~Ls~N~-i~~l~~-----~~~~~~~l~~L~~L~Ls~-N~i~~l~~l-~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          62 ENIPELLSLNLSNNR-LYRLDD-----MSSIVQKAPNLKILNLSG-NELKSEREL-DKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHCTTCCCCCCCSSC-CCCCSG-----GGTHHHHSTTCCCCCCTT-SCCCCGGGH-HHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             HhCCCCCEeeCCCcc-ccCCch-----hHHHHhhCCccccccccc-Cccccchhh-hhhhccccceeecCCCCcCcCccc
Confidence            457788888887764 332210     011123467788777776 233333221 122345677777777653322221


Q ss_pred             C-------CcCCCCcccee
Q 037562          174 G-------ELSTPNLHKVQ  185 (670)
Q Consensus       174 ~-------~~~~~~L~~l~  185 (670)
                      .       ...+|+|+.|+
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence            1       22367777664

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.87  E-value=0.69  Score=36.47  Aligned_cols=74  Identities=11%  Similarity=-0.076  Sum_probs=60.7

Q ss_pred             ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC------CChHHHHHHHHHHHHHHHhh
Q 037562          536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC------ADPKIVTVCLEGLENILKVG  609 (670)
Q Consensus       536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~  609 (670)
                      ++..+..-+.++++.++..|+..|..+..++.+.+...+...+.++.|+.++..      .++.|+..++..+..+....
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            344566667889999999999999999999888888888888888899998853      46789999999998876543