Citrus Sinensis ID: 037573

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
GKAGDRAISDDIWLGELQNLAYHLKDILDELDTEALQRKLLFKPDQPSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVLDLHFCNYIPRDVLC
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccHHHHHHcccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccccHHHHccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccEEEEcccccccccccccccccccccEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcccccEcHHHHHHHHccccHcHcccccccccccccHHEccccccccHcccccccccHHHHHHHHHccccHHHcccccccHHHcccHHHccccHcccccccccccccccccEEEccccccHHcccccccccccccEEEccccccccccccHHHccccccccHcccEEEccccccHHHcccHccccccccEEEccccccHHcccccccccccccEEEcccccHHHccccHHcccccccEEEccccccHcccccccccHHHcEEEccccHHHHHccHHHHcccccccEEEcccccccHccccHHccccccccEEEccccHHHHHcccccccHHHHHHHcHcccc
Coil and Loop (DISEMBL)
gkagdraisddIWLGELQNLAYHLKDILDELDTEALQRKllfkpdqpstskAWKLIIRTCcsnfntpslmfnasmryklkdsTTRLQEIDMEKEQLILKSnsgerskkvgqrlSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMvngcdnlkclpheLHKLSRLQqieirncpslvsfperglpstnltaVCVINCEKLEALLNGIHRLtshqqltveqcpgivaipendyptnltilkitdvNIFKSLFQWGLHRLNSLKELivngefpdmisfpqeeigstsltrLWIRDFQNLEYIsstvldlhfcnyiprdvlc
Flexible Loop (DISEMBL)
gkagdraisddiWLGELQNLAYHLKDILDELDTEALQRKLlfkpdqpstskAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEqlilksnsgerskkvgqrlsttsvIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISstvldlhfcnyiprdvlc
Low Complexity Region (SEG)
GKAGDRAISDDIWLGELQNLAYHLKDILDELDTEALQRKLLFKPDQPSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVLDLHFCNYIPRDVLC
Disordered region (IsUnstruct)
*******ISDDIWLGELQNLAYHLKDILDELDTEALQRKLLFKP****TSKAWKLIIRTCCSNFNTPSLMFNASMRYKL**********************************STTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVLDLHFCNYIPRDV**
Disordered Region (DISOPRED)
***GDRAISDDIWLGELQNLAYHLKDILDELDTEAL***************AWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVLDLHFCNYIPRDVLC
Disordered Region (DISEMBL)
GKAGDRAISDDIWLGELQNLAYHLKDILDELDTEALQRKLLFKPDQPSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNS**********LSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVLDLHFCNYIPRDVLC
Disordered Region (DISPRO)
**AGDRAISDDIWLGELQNLAYHLKDILDELDTEALQRKLLFKPDQPSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVLDLHFCNYIPRDVLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GKAGDRAISDDIWLGELQNLAYHLKDILDELDTEALQRKLLFKPDQPSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVLDLHFCNYIPRDVLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.577	0.144	0.306	2e-20
Q7XA39	988	Putative disease resistan	N/A	no	0.313	0.113	0.364	1e-09
Q7XBQ9	970	Disease resistance protei	N/A	no	0.378	0.139	0.309	6e-08
P26337	630	Putative adenylate cyclas	N/A	no	0.588	0.333	0.265	3e-06
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.462	0.126	0.275	5e-06
Q7XA42	979	Putative disease resistan	N/A	no	0.380	0.138	0.312	8e-06
P23799	630	Putative adenylate cyclas	N/A	no	0.532	0.301	0.268	2e-05
Q7XA40	992	Putative disease resistan	N/A	no	0.313	0.112	0.305	5e-05
Q40392	1144	TMV resistance protein N	N/A	no	0.591	0.184	0.255	6e-05
A7SFP1	577	Leucine-rich repeat prote	N/A	no	0.327	0.202	0.318	0.0001

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 16/222 (7%)

Query: 125  LKYLELIDCECLVNLPQALHCLSSLTEITV----AGCTKLVSFLELSSVAEMFAIITSFE 180
            LK L + DC+ L N  ++L    S +++      + C+ LV+F          ++     
Sbjct: 1141 LKTLYIRDCKKL-NFTESLQPTRSYSQLEYLFIGSSCSNLVNF--------PLSLFPKLR 1191

Query: 181  NIMVNGCDNLKCLP-HELHKLSR--LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEK 237
            ++ +  C++ K    H      R  L+ +EIR+CP+L +FP+ GLP+  L+++ + NC+K
Sbjct: 1192 SLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKK 1251

Query: 238  LEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLN 297
            L+AL   +  LTS   L + +CP I  IP   +P+NL  L I+  +      +WGL  L 
Sbjct: 1252 LQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISLCDKLTPRIEWGLRDLE 1311

Query: 298  SLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS 339
            +L+ L ++G   D+ SFP+E +   S+  L I  F+NL+ ++
Sbjct: 1312 NLRNLEIDGGNEDIESFPEEGLLPKSVFSLRISRFENLKTLN 1353

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 6/118 (5%)

Query: 146 LSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQ 205
           LS+LT + +    +  S  E     EMF  +T+ E +      NLK LP  L  L+ L++
Sbjct: 852 LSTLTSLRIGANYRATSLPE-----EMFTSLTNLEFLSFFDFKNLKDLPTSLTSLNALKR 906

Query: 206 IEIRNCPSLVSFPERGLPS-TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGI 262
           ++I +C SL SFPE+GL   T+LT + V  C+ L+ L  G+  LT+   L V  CP +
Sbjct: 907 LQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTALTNLGVSGCPEV 964

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 7/142 (4%)

Query: 146 LSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQ 205
           L +LT + +       SF E     EMF  + + + + ++ C+NLK LP  L  L+ L+ 
Sbjct: 833 LRALTSLRICYNKVATSFPE-----EMFKNLANLKYLTISRCNNLKELPTSLASLNALKS 887

Query: 206 IEIRNCPSLVSFPERGLPS-TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVA 264
           ++I+ C +L S PE GL   ++LT + V +C  L+ L  G+  LT+   L +  CP ++ 
Sbjct: 888 LKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIK 947

Query: 265 IPENDYPTNL-TILKITDVNIF 285
             E     +   I  I +VNI+
Sbjct: 948 RCEKGIGEDWHKISHIPNVNIY 969

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 35/245 (14%)

Query: 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVA------------------GCTKL 160
           I  LCRLK LE +  +  +N+ +    + +L ++T                    G  K+
Sbjct: 199 ITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKV 258

Query: 161 VSFLELSSVAEMFAI--ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVS-F 217
           + +     + ++ AI  + S E + ++GC N+     EL K S L++++I  C  L S  
Sbjct: 259 LRYSSCHEITDLTAIGGMRSLEKLSLSGCWNVTKGLEELCKFSNLRELDISGCLVLGSAV 318

Query: 218 PERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL 277
             + L   NL  + V NC+  +  LNG+ RL +  +L +  C G+ ++    +  NL+ L
Sbjct: 319 VLKNL--INLKVLSVSNCKNFKD-LNGLERLVNLDKLNLSGCHGVSSLG---FVANLSNL 372

Query: 278 KITDVNIFKSLFQW-GLHRLNSLKELIVNGEFPDMISFPQEEIGS-TSLTRLWIRDFQNL 335
           K  D++  +SL  + GL  LN+L+ L +     D+ SF    +G+  +L+++   D    
Sbjct: 373 KELDISGCESLVCFDGLQDLNNLEVLYLR----DVKSFTN--VGAIKNLSKMRELDLSGC 426

Query: 336 EYISS 340
           E I+S
Sbjct: 427 ERITS 431

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 42/207 (20%)

Query: 117  SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSF-----------LE 165
            S I  L RL  LE+  C  L  LP  ++ LSSL  + ++GC+ L SF           LE
Sbjct: 881  STIGNLHRLVRLEMKKCTGLEVLPTDVN-LSSLETLDLSGCSSLRSFPLISESIKWLYLE 939

Query: 166  LSSVAEM--FAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFP----- 218
             +++ E+   +  T+ +N+ +N C +L  LP  +  L +L   E++ C  L   P     
Sbjct: 940  NTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVNL 999

Query: 219  -------------ERGLP--STNLTAVCVINC--EKLEALLNGIHRLTSHQQLTVEQCPG 261
                          R  P  STN+  + + N   E++ + +  +HRL    +L +++C G
Sbjct: 1000 SSLMILDLSGCSSLRTFPLISTNIVWLYLENTAIEEIPSTIGNLHRLV---KLEMKECTG 1056

Query: 262  IVAIPENDYPTNLTILKITDVNIFKSL 288
            +  +P +    NL+ L I D++   SL
Sbjct: 1057 LEVLPTD---VNLSSLMILDLSGCSSL 1080

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 8/144 (5%)

Query: 118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIIT 177
           VI  L  +K L++I  +  V   +++  L +LT + ++   +  S  E     EMF  + 
Sbjct: 816 VIPTLSSVKTLKVIVTDATV--LRSISNLRALTSLDISDNVEATSLPE-----EMFKSLA 868

Query: 178 SFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPS-TNLTAVCVINCE 236
           + + + ++   NLK LP  L  L+ L+ ++   C +L S PE G+   T+LT + V NC 
Sbjct: 869 NLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCM 928

Query: 237 KLEALLNGIHRLTSHQQLTVEQCP 260
            L+ L  G+  LT+   LT+ QCP
Sbjct: 929 MLKCLPEGLQHLTALTTLTITQCP 952

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 26/216 (12%)

Query: 111 QRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVA 170
           +  +    I+ L +++ L+L  CE + +L   L  L  L E+++ GC +++SF  + S+ 
Sbjct: 404 KSFTNVGAIKNLSKMRELDLSGCERITSLS-GLETLKGLEELSLEGCGEIMSFDPIWSLY 462

Query: 171 EMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAV 230
            +         + V+ C NL+ L   L  L+ L+++ +  C    +F     P  NL  V
Sbjct: 463 HLRV-------LYVSECGNLEDLSG-LQCLTGLEEMYLHGCRKCTNFG----PIWNLRNV 510

Query: 231 CVIN---CEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKS 287
           CV+    CE L+  L+G+  LT  ++L +  C  I  I       NL  L        K 
Sbjct: 511 CVLELSCCENLDD-LSGLQCLTGLEELYLIGCEEITTIGVVGNLRNLKCLSTCWCANLKE 569

Query: 288 LFQWGLHRLNSLKELIVNG-------EFPDMISFPQ 316
           L   GL RL +L++L ++G        F +++S P+
Sbjct: 570 LG--GLERLVNLEKLDLSGCCGLSSSVFMELMSLPK 603

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 9/121 (7%)

Query: 106 SKKVGQRLSTTSVIQVLCR----LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLV 161
           S K+    + TS+++ + +    L YL +   E L  LP +L  L++L  + +  C  L 
Sbjct: 860 SLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALE 919

Query: 162 SFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERG 221
           S  E     E    ++S   + V  C+ LKCLP  L  L+ L  ++IR CP L+   E+G
Sbjct: 920 SLPE-----EGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKG 974

Query: 222 L 222
           +
Sbjct: 975 I 975

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 36/247 (14%)

Query: 111 QRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVA 170
           +RL+ T     +  L+Y+ L  C  L  +  +L C S +  + +  C  L  F  ++   
Sbjct: 630 KRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPCVN--- 686

Query: 171 EMFAIITSFENIMVNGCDNLKCLPHELHKLS-----RLQQIEIRNCPSLVSFPERGLPST 225
                + S E + +  CD+L+ LP    ++       +Q   IR  PS + F  +    T
Sbjct: 687 -----VESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSI-FQYK----T 736

Query: 226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNI 284
           ++T + + N + L AL + I RL S   L+V  C  + ++PE      NL +   +D  I
Sbjct: 737 HVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLI 796

Query: 285 FKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVLD 344
            +      + RLN L  L+  G F D + F    +              +LEY     L+
Sbjct: 797 LRP--PSSIIRLNKLIILMFRG-FKDGVHFEFPPVA---------EGLHSLEY-----LN 839

Query: 345 LHFCNYI 351
           L +CN I
Sbjct: 840 LSYCNLI 846

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|A7SFP1|SHOC2_NEMVE Leucine-rich repeat protein soc-2 homolog OS=Nematostella vectensis GN=v1g189306 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 18/135 (13%)

Query: 114 STTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMF 173
           S  + I+ L  L+ L ++   CL +LP+++  LSS+T ++V          EL SV +  
Sbjct: 448 SIPTEIEYLRSLERL-VLQSNCLGSLPRSIGYLSSVTYLSVGEN-------ELVSVPQEI 499

Query: 174 AIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPER---GLPSTNLTAV 230
             + S E + +N  +NL+ LP+EL     LQ + I NCP L + P +   G PS      
Sbjct: 500 GNMESLEQLYLNDNENLQSLPYELVLCGSLQIMSIENCP-LSALPSQIVAGGPS------ 552

Query: 231 CVINCEKLEALLNGI 245
            VI   +L+   NG+
Sbjct: 553 LVIQYLRLQGPYNGM 567

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Nematostella vectensis (taxid: 45351)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
224132254	552	predicted protein [Populus trichocarpa]	0.630	0.407	0.385	9e-32
356554923	1399	PREDICTED: putative disease resistance R	0.579	0.147	0.369	2e-29
224057382	695	predicted protein [Populus trichocarpa]	0.638	0.328	0.327	8e-27
255556671	1318	Disease resistance protein RPS2, putativ	0.593	0.160	0.366	1e-26
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.602	0.150	0.354	9e-26
45826061	739	resistance protein [Quercus suber]	0.602	0.290	0.362	9e-26
296086967	895	unnamed protein product [Vitis vinifera]	0.607	0.242	0.364	2e-25
359487255	1336	PREDICTED: putative disease resistance p	0.571	0.152	0.380	3e-25
147777746	1199	hypothetical protein VITISV_010202 [Viti	0.571	0.170	0.376	4e-25
225436551	1427	PREDICTED: putative disease resistance p	0.599	0.149	0.361	2e-24

>gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 109 VGQRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS 168
           VG   S TS+ ++   LKYL++  C  L +L       + L  + +  C  L       S
Sbjct: 245 VGICNSLTSIGELPSALKYLQVCSCSKLKSLSSRDKLPAGLKHLAIDSCENL------ES 298

Query: 169 VAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLT 228
           + + F    S EN+ +  C NL+ LP  LHKL  L++I I  CP+LVSF   GLP  NL 
Sbjct: 299 MPDRFQDNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPALVSFAAEGLP-INLR 357

Query: 229 AVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSL 288
            + +I C+ L+A+ + +H L S ++L++  CP IV+ PE  +PT+LT L   D+ I + L
Sbjct: 358 RLFIIKCDGLKAIPDHMHNLMSLEELSIYYCPDIVSFPEEGFPTSLTYLATVDLKICELL 417

Query: 289 FQWGLHRLNSLKELIVNGEFPDMISFPQEEIG---STSLTRLWIRDFQNLEYISST 341
           F WG+H+L++L+ LI+ G F   ISFP  ++G    ++L RL I DF NLEY+S +
Sbjct: 418 FNWGMHKLSALRTLIIQGGF-SHISFPSVDMGVRLPSALNRLSIEDFPNLEYLSYS 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 130/219 (59%), Gaps = 12/219 (5%)

Query: 125  LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMV 184
            +K+L + +C  L  L        S+  + +  C KL       S+A      TS E+I +
Sbjct: 1112 VKHLFIWNCSELSCLSMKGQLPKSIERLEIQSCPKL------ESIANRLHRNTSLESIQI 1165

Query: 185  NGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNG 244
              C+NLK LP  LH L  L++I+I  CP+LVSFPE GLP+++L+ + +++CEKL AL N 
Sbjct: 1166 WNCENLKSLPEGLHFLVNLKEIKIIGCPNLVSFPEEGLPASSLSELSIMSCEKLVALPNS 1225

Query: 245  IHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIV 304
            ++ L S ++L +  CP I   PE ++P NLT L I D N  +++F WGL++L+ L++L +
Sbjct: 1226 MYNLDSLKELEIGYCPSIQYFPEINFPDNLTSLWINDHNACEAMFNWGLYKLSFLRDLTI 1285

Query: 305  NGEFPDMISFPQEEIGS---TSLTRLWIRDFQNLEYISS 340
             G     +  P E++G+   ++LT L ++ F +LE +SS
Sbjct: 1286 IG---GNLFMPLEKLGTMLPSTLTSLTVQGFPHLENLSS 1321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057382|ref|XP_002299219.1| predicted protein [Populus trichocarpa] gi|222846477|gb|EEE84024.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 134/293 (45%), Gaps = 65/293 (22%)

Query: 73  ASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYLELID 132
           +S+RY    S +RL     E+E               GQ L     + + C L+ L+LID
Sbjct: 404 SSLRYLKIRSCSRLVSFGAEEE---------------GQELK----LGLPCSLEMLKLID 444

Query: 133 CECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSF------------- 179
           CE L   P  LH L SL E+ +  C  LVSF++ +    +  +  S+             
Sbjct: 445 CESLQQ-PLILHGLRSLEELHIEKCAGLVSFVQTTLPCTLKRLCISYCDNLQYLLEEEKD 503

Query: 180 ENI--------------------------------MVNGCDNLKCLPHELHKLSRLQQIE 207
            NI                                ++  C  L CLP  L+ LS LQ+  
Sbjct: 504 ANISSTSLLEYLDIRNCPSLKCLLSRRKLPAPLRQLIKYCGKLACLPEGLNMLSHLQENT 563

Query: 208 IRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPE 267
           I NC S++SFPE G P+T+L  + +  CEKL+AL   +  LTS  +L +   P  V+ P+
Sbjct: 564 ICNCSSILSFPEGGFPATSLRKLYMGWCEKLKALPERLRSLTSLVELDIHTRPSFVSFPQ 623

Query: 268 NDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIG 320
             +PTNLT L IT++N  K L  WGLHRL SL  L +      ++SFP EE G
Sbjct: 624 EGFPTNLTSLLITNLNFCKPLLDWGLHRLASLTRLFITAGCAHILSFPCEETG 676

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556671|ref|XP_002519369.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223541436|gb|EEF42986.1| Disease resistance protein RPS2, putative [Ricinus communis]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 122  LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFEN 181
            +  L+ LE+I C  L   P+     +SL  + +  C +L SF              S E 
Sbjct: 1035 ISHLESLEIIKCPSLKFFPRG-ELPASLKVLKIWDCMRLESF-----ARPTLQNTLSLEC 1088

Query: 182  IMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEAL 241
            + V    NL  LP  LH  S L ++ I  C  L SFPERGLPS NL    V NC  L++L
Sbjct: 1089 LSVRKYSNLITLPECLHCFSHLIELHISYCAGLESFPERGLPSLNLRRFYVFNCPNLKSL 1148

Query: 242  LNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKE 301
             + +  LT+ Q L V  CPGI++ PE   P+NLT +++++      L +WGLHRL  LK+
Sbjct: 1149 PDNMQSLTALQHLGVSSCPGILSFPEGGLPSNLTSIRVSNCENLPHLSEWGLHRLLFLKD 1208

Query: 302  LIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS 339
            L ++G  P+++SF Q+     +L  L I    NLE +S
Sbjct: 1209 LTISGGCPNLVSFAQDCRLPATLISLRIGKLLNLESLS 1246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 126/240 (52%), Gaps = 25/240 (10%)

Query: 124  RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLV------------SFLELSSVAE 171
             L+YL++  C  L  L  +    ++LT + +  C KL+             +LE+ S+++
Sbjct: 1099 HLQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQYLEIQSISK 1158

Query: 172  MFAII------TSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPST 225
            +  I       TS E I +  C  LK LP +LH LS+L+Q  I  C S  SFP  GLPS 
Sbjct: 1159 LQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSFPAAGLPS- 1217

Query: 226  NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIF 285
            NL  + + NC+ L+AL NG+  LTS Q+L +      +  P+   PTNL  L + D+  +
Sbjct: 1218 NLRVLGIKNCKNLKALPNGMRNLTSLQKLDISHRLDSLPSPQEGLPTNLIELNMHDLKFY 1277

Query: 286  KSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGST------SLTRLWIRDFQNLEYIS 339
            K +F+WGL +  SL +L ++GE  D+ S+P E           SL+ L I  FQNLE +S
Sbjct: 1278 KPMFEWGLQQPTSLIKLSIHGECLDVDSYPGERENGVMMLLPNSLSILCISYFQNLECLS 1337

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber]

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 128/240 (53%), Gaps = 25/240 (10%)

Query: 124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLV------------SFLELSSVAE 171
            L+YL++  C  L  L  +    ++LT + +  C KL+             +LE+ S+ +
Sbjct: 440 HLQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQYLEIQSIPK 499

Query: 172 MFAII------TSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPST 225
           +  I       T  E I +  C  LK LP +LH LS+L+Q +I  C S  SFP  GLPS 
Sbjct: 500 LQKIAERLHQNTFLECIKIWNCHGLKSLPEDLHNLSKLRQFQIVWCTSFSSFPAAGLPS- 558

Query: 226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIF 285
           N   + + NC+ L+AL NG+  LTS Q+L +      +  P+   PTNL  L + D+  +
Sbjct: 559 NPRVLGIKNCKNLKALPNGMRNLTSLQKLDISNRLDSLPSPQEGLPTNLIELNMIDLKFY 618

Query: 286 KSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGS-----TSLTRLWIRDFQNLEYIS 339
           K +F+WGL +L SL +L ++GE  D+ SFP E E G+      SL+ L I  FQNLE +S
Sbjct: 619 KPMFEWGLQQLTSLIKLSIHGECLDVDSFPGERENGAMMLLPNSLSILCISYFQNLECLS 678

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086967|emb|CBI33200.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 11/228 (4%)

Query: 125 LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELS--SVAEMFAIITSF-EN 181
           ++ L L++C+ ++ +P  LH L+SL  + +  C  L SF E++   + E   I +S  E+
Sbjct: 506 IRELMLVECDDVMEIPPILHSLTSLKNLNIQQCESLASFPEMALPPMLEWLRIDSSLQED 565

Query: 182 IMVNGCDNLKCLP--HELHK--LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEK 237
           +  N   +L  L   + LH   L+ LQ++ I NCP+LVSFP  GLP+ NL  + + +CEK
Sbjct: 566 MPHNHYASLTNLTIWNGLHHVDLTSLQKLSINNCPNLVSFPRGGLPTPNLRMLRIRDCEK 625

Query: 238 LEALLNGIHR-LTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVN-IFKSLFQWGLHR 295
           L++L  G+H  LTS Q L ++ CP I + PE   PTNL+ L I + N +     +WGL  
Sbjct: 626 LKSLPQGMHTLLTSLQYLWIDDCPEIDSFPEGGLPTNLSFLDIENCNKLLACRMEWGLQT 685

Query: 296 LNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVL 343
           L  L+ L + G   +   FP+E    ++LT L IR F NL+ + +  L
Sbjct: 686 LPFLRTLGIQGY--EKERFPEERFLPSTLTALLIRGFPNLKSLDNKGL 731

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487255|ref|XP_002269744.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 121/226 (53%), Gaps = 22/226 (9%)

Query: 130  LIDCECLVNLPQALH------CLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIM 183
            L+ CEC   L  ALH        +SLT+  +  C   ++   L+S        T  E + 
Sbjct: 1045 LVICEC-KKLELALHEDMTHNHYASLTKFDITSCCDSLTSFPLAS-------FTKLETLD 1096

Query: 184  VNGCDNLKCL--PHELHK--LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLE 239
               C NL+ L  P  LH   L+ LQ +EIRNCP+LVSFP  GLP+ NL  + ++NCEKL+
Sbjct: 1097 FFNCGNLESLYIPDGLHHVDLTSLQSLEIRNCPNLVSFPRGGLPTPNLRRLWILNCEKLK 1156

Query: 240  ALLNGIHR-LTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVN-IFKSLFQWGLHRLN 297
            +L  G+H  LTS Q L +  CP I + PE   PTNL+ L I + N +  +  +WGL  L 
Sbjct: 1157 SLPQGMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELDIRNCNKLVANQMEWGLQTLP 1216

Query: 298  SLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVL 343
             L+ L + G   +   FP+E    ++LT L IR F NL+ + +  L
Sbjct: 1217 FLRTLTIEGY--ENERFPEERFLPSTLTSLEIRGFPNLKSLDNKGL 1260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777746|emb|CAN60302.1| hypothetical protein VITISV_010202 [Vitis vinifera]

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 121/226 (53%), Gaps = 22/226 (9%)

Query: 130  LIDCECLVNLPQALH------CLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIM 183
            L+ CEC   L  ALH        +SLT+  +  C   ++   L+S        T  E + 
Sbjct: 908  LVICEC-KKLELALHEDMTHNHYASLTKFDITSCCDSLTSFPLAS-------FTKLETLD 959

Query: 184  VNGCDNLKCL--PHELHK--LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLE 239
               C NL+ L  P  LH   L+ JQ +EIRNCP+LVSFP  GLP+ NL  + ++NCEKL+
Sbjct: 960  FFNCGNLESLYIPDGLHHVDLTSJQSLEIRNCPNLVSFPRGGLPTPNLRRLWILNCEKLK 1019

Query: 240  ALLNGIHR-LTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVN-IFKSLFQWGLHRLN 297
            +L  G+H  LTS Q L +  CP I + PE   PTNL+ L I + N +  +  +WGL  L 
Sbjct: 1020 SLPQGMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELDIRNCNKLVANQMEWGLQTLP 1079

Query: 298  SLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVL 343
             L+ L + G   +   FP+E    ++LT L IR F NL+ + +  L
Sbjct: 1080 FLRTLTIEGY--ENERFPEERFLPSTLTSLEIRGFPNLKSLDNKGL 1123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436551|ref|XP_002274375.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 118/224 (52%), Gaps = 10/224 (4%)

Query: 125  LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMV 184
            LK L +  C  L  LP  +    SL  + ++GC+ L SF    S      ++  F   ++
Sbjct: 1145 LKRLVIRKCGNLKALPAMILHTLSLEHLEISGCSSLKSFPSSGSGLPANVMLKEF---VI 1201

Query: 185  NGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPST---NLTAVCVINCEKLEAL 241
              C NL+ LP +LH L  L ++ I  CP LVSFP  G+ +T   NL  + ++ C  L AL
Sbjct: 1202 KDCVNLESLPEDLHSLIYLDRLIIERCPCLVSFP--GMTNTTITNLRTMSIVQCGNLVAL 1259

Query: 242  LNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKE 301
             + +H+L+S Q L +  CP IV++PE   P NL  L I D    K  F+WGLH+L SL  
Sbjct: 1260 PHSMHKLSSLQHLRITGCPRIVSLPEGGMPMNLKTLTILDCENLKPQFEWGLHKLMSLCH 1319

Query: 302  LIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTVLDL 345
              + G  P + SFP+  + ST L+ L I+   NL  +S  + +L
Sbjct: 1320 FTLGG-CPGLSSFPEWLLPST-LSSLCIKKLTNLNSLSERLRNL 1361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.577	0.144	0.315	7.2e-23
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.579	0.174	0.260	1.9e-12
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.568	0.163	0.263	4.5e-10
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.803	0.144	0.236	2.2e-09
TAIR|locus:2100182	1007	AT3G44400 [Arabidopsis thalian	0.529	0.187	0.296	4.5e-09
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.683	0.204	0.268	9.3e-09
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.728	0.213	0.264	4.4e-08
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.633	0.190	0.265	5.5e-08
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.204	0.069	0.367	1.7e-07
TAIR|locus:2122985	1167	AT4G19530 [Arabidopsis thalian	0.602	0.184	0.253	2.5e-07

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
 Identities = 70/222 (31%), Positives = 119/222 (53%)

Query:   125 LKYLELIDCECLVNLPQALHCLSSLTEITV----AGCTKLVSFLELSSVAEMFAIITSFE 180
             LK L + DC+ L N  ++L    S +++      + C+ LV+F  LS       +     
Sbjct:  1141 LKTLYIRDCKKL-NFTESLQPTRSYSQLEYLFIGSSCSNLVNF-PLS-------LFPKLR 1191

Query:   181 NIMVNGCDNLKCLP-HELHKLSR--LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEK 237
             ++ +  C++ K    H      R  L+ +EIR+CP+L +FP+ GLP+  L+++ + NC+K
Sbjct:  1192 SLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKK 1251

Query:   238 LEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLN 297
             L+AL   +  LTS   L + +CP I  IP   +P+NL  L I+  +      +WGL  L 
Sbjct:  1252 LQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISLCDKLTPRIEWGLRDLE 1311

Query:   298 SLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS 339
             +L+ L ++G   D+ SFP+E +   S+  L I  F+NL+ ++
Sbjct:  1312 NLRNLEIDGGNEDIESFPEEGLLPKSVFSLRISRFENLKTLN 1353

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 56/215 (26%), Positives = 105/215 (48%)

Query:   128 LELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGC 187
             L+LIDC  LV LP ++  L++L ++ +  C+ LV   +L S    F  +TS + + ++GC
Sbjct:   709 LDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLV---KLPS---SFGNVTSLKELNLSGC 762

Query:   188 DNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHR 247
              +L  +P  +  +  L+++    C SLV  P     +TNL  + ++NC  L    + +  
Sbjct:   763 SSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLN 822

Query:   248 LTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGE 307
             LT  + L +  C  +V +P      NL  L ++D +    L  + +    +L  L ++G 
Sbjct:   823 LTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSDCSSLMEL-PFTIENATNLDTLYLDG- 880

Query:   308 FPDMISFPQEEIGSTSLTRLWIRDFQNLEYISSTV 342
               +++  P      T+L  L++    +L+ + S V
Sbjct:   881 CSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLV 915

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 58/220 (26%), Positives = 100/220 (45%)

Query:   117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAII 176
             S I+ L  L+ L+L DC  LV LP +++  ++L  +++  C+++V    + +V       
Sbjct:   757 SSIEKLTSLQILDLRDCSSLVKLPPSINA-NNLQGLSLTNCSRVVKLPAIENV------- 808

Query:   177 TSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCE 236
             T+   + +  C +L  LP  +   + L +++IR C SLV  P      TNL    + NC 
Sbjct:   809 TNLHQLKLQNCSSLIELPLSIGTANNLWKLDIRGCSSLVKLPSSIGDMTNLKEFDLSNCS 868

Query:   237 KLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRL 296
              L  L + I  L     L +  C  +  +P N    +L IL +TD +  KS  +   H  
Sbjct:   869 NLVELPSSIGNLQKLFMLRMRGCSKLETLPTNINLISLRILDLTDCSQLKSFPEISTH-- 926

Query:   297 NSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLE 336
               + EL + G      +  +  +  TS +RL + +    E
Sbjct:   927 --ISELRLKGT-----AIKEVPLSITSWSRLAVYEMSYFE 959

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 73/309 (23%), Positives = 139/309 (44%)

Query:    44 PDQPSTSKAWKLIIRTCCSNFNTPSLMFN-ASMRYKLKDSTTRLQEIDMEKEQLILKSNS 102
             PD  + +   +LI++ C S    PS +     ++       T + E+         K+ +
Sbjct:   681 PDLSTATNLEELILKYCVSLVKVPSCVGKLGKLQVLCLHGCTSILELPS-----FTKNVT 735

Query:   103 GERSKKVGQRLSTTSVIQVLCRLKYLELIDCECL--VNLPQALHCLSSLTEITVAGCTKL 160
             G +S  + +  S   +   +     L+ +D  CL  + LP ++   ++L +  + GC+ L
Sbjct:   736 GLQSLDLNECSSLVELPSSIGNAINLQNLDLGCLRLLKLPLSIVKFTNLKKFILNGCSSL 795

Query:   161 VSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPER 220
             V   EL  +       T+ +N+ +  C +L  LP  +     LQ +++ NC SLV  P  
Sbjct:   796 V---ELPFMGNA----TNLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLVKLPSF 848

Query:   221 GLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKI 279
                +TNL  + +  C  L  +   I  +T+  +L +  C  +V +P +    + L +L +
Sbjct:   849 IGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVELPSSVGNISELQVLNL 908

Query:   280 TDV-NIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGS-TSLTRLWIRDFQNLEY 337
              +  N+ K    +G H  N L  L ++G    ++  P   IG+ T+L  L + +  NL  
Sbjct:   909 HNCSNLVKLPSSFG-HATN-LWRLDLSG-CSSLVELPSS-IGNITNLQELNLCNCSNLVK 964

Query:   338 ISSTVLDLH 346
             + S++ +LH
Sbjct:   965 LPSSIGNLH 973

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 62/209 (29%), Positives = 102/209 (48%)

Query:    63 NFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLI-LK--SNSGERSKKVGQRLSTTSVI 119
             N   PS  FN     +L  S+++L+++    +QL  LK    S     K    LST +  
Sbjct:   637 NICLPST-FNPEFLVELDMSSSKLRKLWEGTKQLRNLKWMDLSDSEDLKELPNLSTAT-- 693

Query:   120 QVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSF 179
                  L+ L+L  C  LV LP ++  L+SL  + +  C+ LV   EL S    F   T  
Sbjct:   694 ----NLEELKLRRCSSLVELPSSIEKLTSLQILDLHSCSSLV---ELPS----FGNATKL 742

Query:   180 ENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKL- 238
             E + +  C +L  LP  ++  + LQ++ +RNC  +V  P     +TNL  + + NC  L 
Sbjct:   743 EKLDLENCSSLVKLPPSINA-NNLQELSLRNCSRVVELPAIE-NATNLRELKLQNCSSLI 800

Query:   239 EALLNGIHRLTSHQQLTVEQCPGIVAIPE 267
             E  L+ + R++  + LT+  C  +V++P+
Sbjct:   801 ELPLSWVKRMSRLRVLTLNNCNNLVSLPQ 829

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 74/276 (26%), Positives = 122/276 (44%)

Query:    35 ALQRKLLFKPDQPSTSKAWKLIIRTCC-SNFNTPSLMFNASMRY----KLKDSTTRLQEI 89
             ALQ  +   P   S +  W      C  S FN P  +    MR     KL + T +L+ +
Sbjct:   660 ALQDLIYHSPKIRSLN--WYGYESLCLPSTFN-PEFLVELDMRSSNLRKLWEGTKQLRNL 716

Query:    90 ---DME-----KE--QLILKSNSGE-RSKKVGQRLSTTSVIQVLCRLKYLELIDCECLVN 138
                D+      KE   L   +N  E + +     +   S I+ L  L+ L+L +C  L  
Sbjct:   717 KWMDLSYSSYLKELPNLSTATNLEELKLRNCSSLVELPSSIEKLTSLQILDLENCSSLEK 776

Query:   139 LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198
             LP A+   + L E+ +  C+ L+  L LS         T+ + + ++GC +L  LP  + 
Sbjct:   777 LP-AIENATKLRELKLQNCSSLIE-LPLS-----IGTATNLKQLNISGCSSLVKLPSSIG 829

Query:   199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ 258
              ++ L+  ++ NC SLV+ P       NL  + +  C KLEAL   I+ L S   L +  
Sbjct:   830 DITDLEVFDLSNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEALPININ-LKSLDTLNLTD 888

Query:   259 CPGIVAIPENDYPTNLTILKITDVNIFK---SLFQW 291
             C  + + PE    T+++ L++    I +   S+  W
Sbjct:   889 CSQLKSFPE--ISTHISELRLKGTAIKEVPLSIMSW 922

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 80/302 (26%), Positives = 139/302 (46%)

Query:    63 NFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLI-LK----SNSGERSKKVGQRLSTTS 117
             N   PS  FN     +L  S ++L+++    +QL  LK    SNS E  K++   LST +
Sbjct:   683 NICLPST-FNPEFLVELHMSFSKLRKLWEGTKQLRNLKWMDLSNS-EDLKEL-PNLSTAT 739

Query:   118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLV---SFLELSSVAEMFA 174
                    L+ L+L DC  LV LP ++  L+SL  + +  C+ LV   SF   + + E++ 
Sbjct:   740 ------NLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEELYL 793

Query:   175 I-ITSFENI--MVNG----------CDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERG 221
                +S E +   +N           C  +  LP  +   + LQ++++ NC SL+  P   
Sbjct:   794 ENCSSLEKLPPSINANNLQQLSLINCSRVVELP-AIENATNLQKLDLGNCSSLIELPLSI 852

Query:   222 LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITD 281
               +TNL  + +  C  L  L + I  +T+ ++  +  C  +V +P N     L  L +  
Sbjct:   853 GTATNLKELNISGCSSLVKLPSSIGDITNLKEFDLSNCSNLVELPININLKFLDTLNLAG 912

Query:   282 VNIFKS-------LFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQN 334
              +  KS       +F     R++ L++L +N    +++S PQ      SL  L+  + ++
Sbjct:   913 CSQLKSFPEISTKIFTDCYQRMSRLRDLRINN-CNNLVSLPQLP---DSLAYLYADNCKS 968

Query:   335 LE 336
             LE
Sbjct:   969 LE 970

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 67/252 (26%), Positives = 112/252 (44%)

Query:    44 PDQPSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLK-DSTTRLQEID-----MEKEQLI 97
             PD  +     KLI+  C S    PS + NA     L  +  + L E+      +  ++L+
Sbjct:   693 PDLSTAINLRKLILSNCSSLIKLPSCIGNAINLEDLDLNGCSSLVELPSFGDAINLQKLL 752

Query:    98 LK--SNSGERSKKVGQRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVA 155
             L+  SN  E    +G  ++          L+ L+L  C  L+ LP ++    +L  + + 
Sbjct:   753 LRYCSNLVELPSSIGNAIN----------LRELDLYYCSSLIRLPSSIGNAINLLILDLN 802

Query:   156 GCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSL 214
             GC+ L   LEL SS+    AI  + + + +  C  L  LP  +     LQ + + +C SL
Sbjct:   803 GCSNL---LELPSSIGN--AI--NLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSL 855

Query:   215 VSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNL 274
             +  P     +TNL  + + NC  L  L   I  L   Q+L ++ C  +  +P N    +L
Sbjct:   856 LELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESL 915

Query:   275 TILKITDVNIFK 286
              IL + D ++ K
Sbjct:   916 DILVLNDCSMLK 927

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query:   133 CECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKC 192
             C+ LV  P  L+  ++L ++ V  CT L S LELS+  E      +  N+ +N C NL+ 
Sbjct:   935 CDTLVKFP--LNHFANLDKLEVDQCTSLYS-LELSN--EHLRGPNALRNLRINDCQNLQL 989

Query:   193 LPHELHKLSRLQQIEIRNC 211
             LP +L+ L +  Q+ I NC
Sbjct:   990 LP-KLNALPQNLQVTITNC 1007

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2122985 AT4G19530 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 62/245 (25%), Positives = 116/245 (47%)

Query:    16 ELQNLAYHLKDI-LDELDTEALQ--RKLLFKPDQPSTSKAWKLIIRTCCSNFNTPSLMFN 72
             +L+NL+   + + L+ L+ E     + LL  P+  + S  + L ++ C    + P +   
Sbjct:   677 KLENLSGLSQALNLERLNLEGCTALKTLLLGPENMA-SLVF-LNLKGCTGLESLPKINLR 734

Query:    73 ASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRL-STTSVIQVLCRLKYLELI 131
              S++  +  + + L+E  +  E L      G   K + Q +   TS++++     Y++  
Sbjct:   735 -SLKTLILSNCSNLEEFWVISETLYTLYLDGTAIKTLPQDMVKLTSLVKL-----YMK-- 786

Query:   132 DCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAI-------------ITS 178
             DCE LV LP+    L  L E+  +GC +L S  ++    +   I             I+S
Sbjct:   787 DCEMLVKLPEEFDKLKVLQELVCSGCKRLSSLPDVMKNMQCLQILLLDGTAITKIPHISS 846

Query:   179 FENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKL 238
              E + ++  + + CL +++  LS+L+ ++++ C  LVS PE  LP TNL  +    CE L
Sbjct:   847 LERLCLSRNEKISCLSNDIRLLSQLKWLDLKYCTKLVSIPE--LP-TNLQCLDANGCESL 903

Query:   239 EALLN 243
               + N
Sbjct:   904 TTVAN 908

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-07

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 26/210 (12%)

Query: 117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAI 175
           S IQ L +L+ L++  CE L  LP  ++ L SL  + ++GC++L SF ++S+ ++ +   
Sbjct: 675 SSIQYLNKLEDLDMSRCENLEILPTGIN-LKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733

Query: 176 ITSFE----NIMVNGCDNLKCLPHELHKLSR---------------LQQIEIRNCPSLVS 216
            T+ E    N+ +   D L     +  KL                 L ++ + + PSLV 
Sbjct: 734 ETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE 793

Query: 217 FPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTI 276
            P        L  + + NC  LE L  GI+ L S + L +  C  +   P  D  TN++ 
Sbjct: 794 LPSSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFP--DISTNISD 850

Query: 277 LKITDVNIFKSLFQWGLHRLNSLKELIVNG 306
           L ++   I +    W + + ++L  L +NG
Sbjct: 851 LNLSRTGIEE--VPWWIEKFSNLSFLDMNG 878

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 15/122 (12%)

Query: 117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAI 175
           S IQ L +L++LE+ +C  L  LP  ++ L SL  + ++GC++L +F ++S+ ++++   
Sbjct: 796 SSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDLNLS 854

Query: 176 ITSFE-------------NIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL 222
            T  E              + +NGC+NL+ +   + KL  L+ ++  +C +L      G 
Sbjct: 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGS 914

Query: 223 PS 224
           PS
Sbjct: 915 PS 916

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.45
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.44
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.4
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.37
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.35
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.2
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.2
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.2
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.19
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.18
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.18
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.14
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.09
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.09
PRK15386	426	type III secretion protein GogB; Provisional	98.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.76
PRK15386	426	type III secretion protein GogB; Provisional	98.72
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.59
KOG4341	483	consensus F-box protein containing LRR [General fu	98.53
KOG4341	483	consensus F-box protein containing LRR [General fu	98.31
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.3
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.22
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.8
PLN03150	623	hypothetical protein; Provisional	97.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.54
PLN03150	623	hypothetical protein; Provisional	97.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.06
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.48
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.12
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.67
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.17
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.03
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	93.88
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	93.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.36
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.63
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.54

>PLN03210 Resistant to P

Probab=99.86  E-value=2.6e-21  Score=204.57  Aligned_cols=271  Identities=19%  Similarity=0.268  Sum_probs=171.1

Q ss_pred             ccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhh-hccCCccccccccccccCCcccccCCCcccEE
Q 037573           50 SKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLKYL  128 (357)
Q Consensus        50 ~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  128 (357)
                      .+++.|...++.. ..+|+--...+|+.+.+.++ .++.+......+ .++......+    ..+...+.++.+++|+.|
T Consensus       589 ~~Lr~L~~~~~~l-~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~----~~l~~ip~ls~l~~Le~L  662 (1153)
T PLN03210        589 PKLRLLRWDKYPL-RCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGS----KNLKEIPDLSMATNLETL  662 (1153)
T ss_pred             cccEEEEecCCCC-CCCCCcCCccCCcEEECcCc-cccccccccccCCCCCEEECCCC----CCcCcCCccccCCcccEE
Confidence            4578888776543 33333334566666665543 244433222111 1111111111    111222346678888999


Q ss_pred             eeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEe
Q 037573          129 ELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEI  208 (357)
Q Consensus       129 ~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  208 (357)
                      ++++|..+..+|..++.+++|+.|++++|..+..+|..+.       +++|+.|++++|..+..+|..   .++|+.|++
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~-------l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L  732 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN-------LKSLYRLNLSGCSRLKSFPDI---STNISWLDL  732 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCC-------CCCCCEEeCCCCCCccccccc---cCCcCeeec
Confidence            9988888888888888888899999988888888887653       667777777777666555532   234444544


Q ss_pred             cCCCCCcccCCCC------------------------------CCCCCcceEEeccCCcchhhHhhhccCCcccceeecc
Q 037573          209 RNCPSLVSFPERG------------------------------LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ  258 (357)
Q Consensus       209 ~~c~~l~~l~~~~------------------------------~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  258 (357)
                      +++ .++.+|...                              ...++|+.|++++|..+..+|..++++++|++|++++
T Consensus       733 ~~n-~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~  811 (1153)
T PLN03210        733 DET-AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN  811 (1153)
T ss_pred             CCC-ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence            432 233332100                              0013667777777766677777777777777777777


Q ss_pred             CcCccccCCCCCCCCcceEEecCCCCce--------------------ecccccccccCCccEEEEeccCCCCCcCCCCC
Q 037573          259 CPGIVAIPENDYPTNLTILKITDVNIFK--------------------SLFQWGLHRLNSLKELIVNGEFPDMISFPQEE  318 (357)
Q Consensus       259 c~~l~~l~~~~~~~~L~~L~l~~c~~l~--------------------~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~  318 (357)
                      |..++.+|....+++|++|++++|+.+.                    .+|. .+..+++|++|++.+ |++++.+|...
T Consensus       812 C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~-si~~l~~L~~L~L~~-C~~L~~l~~~~  889 (1153)
T PLN03210        812 CINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW-WIEKFSNLSFLDMNG-CNNLQRVSLNI  889 (1153)
T ss_pred             CCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChH-HHhcCCCCCEEECCC-CCCcCccCccc
Confidence            7777777665445666666666665543                    3333 366788899999998 99999888877


Q ss_pred             CCCCCcceEecccCccccccc
Q 037573          319 IGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       319 ~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      ..+++|+.+++++|+.|+.+.
T Consensus       890 ~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        890 SKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             ccccCCCeeecCCCccccccc
Confidence            678888889999998888664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.84  E-value=2.2e-20  Score=197.57  Aligned_cols=221  Identities=22%  Similarity=0.381  Sum_probs=175.4

Q ss_pred             ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc
Q 037573          117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~  196 (357)
                      ..+..+++|+.|+++++..+..+|. ++.+++|++|++++|..+..+|..+.+      +++|+.|++++|..++.+|..
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~------L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY------LNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhc------cCCCCEEeCCCCCCcCccCCc
Confidence            3467789999999999888888886 888999999999999999999987777      899999999999999999987


Q ss_pred             cCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhh------------------------------c
Q 037573          197 LHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGI------------------------------H  246 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~------------------------------~  246 (357)
                      + ++++|+.|++++|..+..+|. ..  ++|++|++.++. ++.+|..+                              .
T Consensus       701 i-~l~sL~~L~Lsgc~~L~~~p~-~~--~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSRLKSFPD-IS--TNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             C-CCCCCCEEeCCCCCCcccccc-cc--CCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhh
Confidence            6 789999999999998888874 22  378888887754 55555322                              1


Q ss_pred             cCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCC---------
Q 037573          247 RLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQ---------  316 (357)
Q Consensus       247 ~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~---------  316 (357)
                      ..++|+.|++++|+.+..+|.. +.+++|+.|++++|+.++.+|..  ..+++|++|++++ |+.+..+|.         
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~-c~~L~~~p~~~~nL~~L~  852 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSG-CSRLRTFPDISTNISDLN  852 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCC-CCccccccccccccCEeE
Confidence            1357888899988888888876 55789999999999999988764  2688888898888 877765543         


Q ss_pred             -----------CCCCCCCcceEecccCcccccccc--------cccccccccCCC
Q 037573          317 -----------EEIGSTSLTRLWIRDFQNLEYISS--------TVLDLHFCNYIP  352 (357)
Q Consensus       317 -----------~~~~~~sL~~L~l~~c~~L~~l~~--------~~~~~~~~~~i~  352 (357)
                                 .+..+++|++|++.+|++|+.++.        +.+++..|..++
T Consensus       853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence                       334567889999999999988754        234556676654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=1.5e-17  Score=174.79  Aligned_cols=272  Identities=17%  Similarity=0.070  Sum_probs=149.9

Q ss_pred             CCcccceEEeeccCCCCCCCCc--cccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCc
Q 037573           47 PSTSKAWKLIIRTCCSNFNTPS--LMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCR  124 (357)
Q Consensus        47 ~~~~~l~~l~l~~c~~~~~~~~--l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (357)
                      ..+++++.|+++++.....+|.  +..+++|+.+.+.++.-...++... --.+..+....+...   ...+..++.+++
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-l~~L~~L~Ls~n~~~---~~~p~~~~~l~~  165 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS-IPNLETLDLSNNMLS---GEIPNDIGSFSS  165 (968)
T ss_pred             hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccc-cCCCCEEECcCCccc---ccCChHHhcCCC
Confidence            3567899999998864433442  2367788877776654322222211 001111111111000   112445677888


Q ss_pred             ccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCcc
Q 037573          125 LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQ  204 (357)
Q Consensus       125 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  204 (357)
                      |++|+++++.....+|..++++++|++|++++|.....+|..+.+      +++|+.|++++|.....+|..++++++|+
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ------MKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC------cCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            888888887665667777888888888888876555556665555      66777777776654455666677777777


Q ss_pred             EEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCC
Q 037573          205 QIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVN  283 (357)
Q Consensus       205 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~  283 (357)
                      +|++++|.....+|.....+++|++|++++|.....+|..+..+++|++|++++|.-...+|.. ..+++|+.|+++++ 
T Consensus       240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n-  318 (968)
T PLN00113        240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN-  318 (968)
T ss_pred             EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC-
Confidence            7777765433344432112236666666665544455556666666666666665322233332 22455666666552 


Q ss_pred             CceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573          284 IFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR  330 (357)
Q Consensus       284 ~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~  330 (357)
                      .+....+..+..+++|+.|++.+ |.-...+|..+...++|+.|+++
T Consensus       319 ~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~~~~L~~L~Ls  364 (968)
T PLN00113        319 NFTGKIPVALTSLPRLQVLQLWS-NKFSGEIPKNLGKHNNLTVLDLS  364 (968)
T ss_pred             ccCCcCChhHhcCCCCCEEECcC-CCCcCcCChHHhCCCCCcEEECC
Confidence            33322222245555555555555 43333444444344455555444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.72  E-value=2.2e-17  Score=173.54  Aligned_cols=206  Identities=16%  Similarity=0.122  Sum_probs=89.5

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      ++.+++|+.|+++++.....+|..++.+++|++|++++|.....+|..+.+      +++|+.|++++|.....+|..+.
T Consensus       208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~p~~l~  281 (968)
T PLN00113        208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN------LKNLQYLFLYQNKLSGPIPPSIF  281 (968)
T ss_pred             HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC------CCCCCEEECcCCeeeccCchhHh
Confidence            444455555555544433344444555555555555544322233333333      44455555544433333444444


Q ss_pred             CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceE
Q 037573          199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTIL  277 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L  277 (357)
                      .+++|+.|++++|.....+|.....+++|++|+++++.....+|..+..+++|+.|++++|.....+|.. +..++|+.|
T Consensus       282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L  361 (968)
T PLN00113        282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL  361 (968)
T ss_pred             hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence            4455555555444322223321111124555555444333334444444445555555443322222221 123344444


Q ss_pred             EecCC-----------------------CCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          278 KITDV-----------------------NIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       278 ~l~~c-----------------------~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      +++++                       +.+....+..+..+++|+.|++.+ |.--..+|..+..+++|+.|++++
T Consensus       362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~  437 (968)
T PLN00113        362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD-NSFSGELPSEFTKLPLVYFLDISN  437 (968)
T ss_pred             ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC-CEeeeECChhHhcCCCCCEEECcC
Confidence            44442                       222211122244555666666665 443344555444556666666653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.45  E-value=7.6e-17  Score=144.36  Aligned_cols=193  Identities=23%  Similarity=0.318  Sum_probs=125.1

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      ++.+..|+.++++... +..+|++++.+..|..++..+ ..+.++|..+++      +.+|..+++.+ +.+..+|+..-
T Consensus       110 i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~------~~~l~~l~~~~-n~l~~l~~~~i  180 (565)
T KOG0472|consen  110 IGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVN------LSKLSKLDLEG-NKLKALPENHI  180 (565)
T ss_pred             Hhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhccc-cccccCchHHHH------HHHHHHhhccc-cchhhCCHHHH
Confidence            4556666666666643 555666666676777766665 456667766665      66666666666 34566665555


Q ss_pred             CCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCC--CCCCc
Q 037573          199 KLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNL  274 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L  274 (357)
                      .++.|++|+... .-++.+|+  +++.  +|+.|+++. +++..+| .|.++..|++|+++. +.++-+|.+.  .++++
T Consensus       181 ~m~~L~~ld~~~-N~L~tlP~~lg~l~--~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l  254 (565)
T KOG0472|consen  181 AMKRLKHLDCNS-NLLETLPPELGGLE--SLELLYLRR-NKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSL  254 (565)
T ss_pred             HHHHHHhcccch-hhhhcCChhhcchh--hhHHHHhhh-cccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccc
Confidence            567777776554 45566666  3333  677777766 4466666 667777777777755 5666666652  36677


Q ss_pred             ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      ..||+++ +.+++.|.. +..+.+|+.|++++  +.+..+|-+.+.+ .|+.|.+.+
T Consensus       255 ~vLDLRd-Nklke~Pde-~clLrsL~rLDlSN--N~is~Lp~sLgnl-hL~~L~leG  306 (565)
T KOG0472|consen  255 LVLDLRD-NKLKEVPDE-ICLLRSLERLDLSN--NDISSLPYSLGNL-HLKFLALEG  306 (565)
T ss_pred             eeeeccc-cccccCchH-HHHhhhhhhhcccC--CccccCCcccccc-eeeehhhcC
Confidence            7777777 777777654 66777777788776  7777777666555 555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.44  E-value=7.8e-15  Score=138.22  Aligned_cols=157  Identities=21%  Similarity=0.304  Sum_probs=102.0

Q ss_pred             cccccEEEeeCCC-CCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccC-------------------
Q 037573          176 ITSFENIMVNGCD-NLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINC-------------------  235 (357)
Q Consensus       176 l~~L~~L~l~~c~-~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c-------------------  235 (357)
                      +++|+.|++++.. .+..+|.++-.+.+|..++++ |+++..+|+..+..++|+.|+++++                   
T Consensus       196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN  274 (1255)
T KOG0444|consen  196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN  274 (1255)
T ss_pred             chhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence            4455666665543 234556666666666666666 3555555554333335555555552                   


Q ss_pred             ---CcchhhHhhhccCCcccceeeccCcCc--cccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCC
Q 037573          236 ---EKLEALLNGIHRLTSHQQLTVEQCPGI--VAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFP  309 (357)
Q Consensus       236 ---~~l~~l~~~~~~l~~L~~L~l~~c~~l--~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~  309 (357)
                         +.++.+|..+.++++|+.|.+.+ +++  +.+|.+ |-+.+|+.+..++ |.++-+|+ ++..|..|+.|.++  |+
T Consensus       275 lSrNQLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPE-glcRC~kL~kL~L~--~N  349 (1255)
T KOG0444|consen  275 LSRNQLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE-GLCRCVKLQKLKLD--HN  349 (1255)
T ss_pred             cccchhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCch-hhhhhHHHHHhccc--cc
Confidence               22445666666677777776654 333  345544 4466777777777 66765554 58889999999998  59


Q ss_pred             CCCcCCCCCCCCCCcceEecccCcccccc
Q 037573          310 DMISFPQEEIGSTSLTRLWIRDFQNLEYI  338 (357)
Q Consensus       310 ~l~~l~~~~~~~~sL~~L~l~~c~~L~~l  338 (357)
                      .+..+|+.+.+++-|+.|++.+-|+|-.=
T Consensus       350 rLiTLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  350 RLITLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             ceeechhhhhhcCCcceeeccCCcCccCC
Confidence            99999999988999999999988777553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.40  E-value=2.8e-14  Score=128.10  Aligned_cols=255  Identities=19%  Similarity=0.205  Sum_probs=157.2

Q ss_pred             CCCCccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCcccEEeeccCcCcccccccc
Q 037573           64 FNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYLELIDCECLVNLPQAL  143 (357)
Q Consensus        64 ~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~  143 (357)
                      ..+|.++.+..|..++.... +++.++...+..-++++......  .+.++ ..-...++++..|++.++ .++++|+++
T Consensus       197 tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~--i~~lp-ae~~~~L~~l~vLDLRdN-klke~Pde~  271 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ--IEMLP-AEHLKHLNSLLVLDLRDN-KLKEVPDEI  271 (565)
T ss_pred             cCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH--HHhhH-HHHhcccccceeeecccc-ccccCchHH
Confidence            44556888888888877664 35555522211112221111110  00000 111346778888888775 477888877


Q ss_pred             CCCCCcCEEeecCCCcchhcccccccc--ccccc----------------------------------------------
Q 037573          144 HCLSSLTEITVAGCTKLVSFLELSSVA--EMFAI----------------------------------------------  175 (357)
Q Consensus       144 ~~l~~L~~L~i~~c~~l~~~~~~~~~L--~~L~~----------------------------------------------  175 (357)
                      -.+.+|.+|++++ ..+..+|...+++  +.|..                                              
T Consensus       272 clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  272 CLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             HHhhhhhhhcccC-CccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            7788888888887 5677777776642  12221                                              


Q ss_pred             ----------cccccEEEeeCCCCCcccccccCCCCC---ccEEEecCCCCCcccCC-----------------------
Q 037573          176 ----------ITSFENIMVNGCDNLKCLPHELHKLSR---LQQIEIRNCPSLVSFPE-----------------------  219 (357)
Q Consensus       176 ----------l~~L~~L~l~~c~~l~~lp~~l~~l~~---L~~L~l~~c~~l~~l~~-----------------------  219 (357)
                                ..+.+.|++++ ..+..+|.+......   ....+++. .++.++|.                       
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~  428 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVP  428 (565)
T ss_pred             CCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccch
Confidence                      22334444433 223333333221111   22222222 12222222                       


Q ss_pred             ---CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccc
Q 037573          220 ---RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHR  295 (357)
Q Consensus       220 ---~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~  295 (357)
                         ..+  ++|..|++++ +.+.++|..++.+..||.|+++. +++..+|.. ..+..++++-.++ +++..+++.++..
T Consensus       429 ~~l~~l--~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  429 LELSQL--QKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKN  503 (565)
T ss_pred             HHHHhh--hcceeeeccc-chhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhcc-ccccccChHHhhh
Confidence               122  4788888866 55788888888888899999987 477777765 3355666666666 7888888888999


Q ss_pred             cCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573          296 LNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ  333 (357)
Q Consensus       296 l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~  333 (357)
                      +.+|.+|++.+  +++..+|...+.+++|++|.+++=|
T Consensus       504 m~nL~tLDL~n--Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  504 MRNLTTLDLQN--NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhhcceeccCC--CchhhCChhhccccceeEEEecCCc
Confidence            99999999997  9999999999999999999998743

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.37  E-value=2e-13  Score=127.84  Aligned_cols=147  Identities=16%  Similarity=0.243  Sum_probs=108.7

Q ss_pred             cccccEEEeeCCCCCccc-ccccCCCCCccEEEecCCCCCcccCCCCCC-CCCcceEEeccCCcchhhHh-hhccCCccc
Q 037573          176 ITSFENIMVNGCDNLKCL-PHELHKLSRLQQIEIRNCPSLVSFPERGLP-STNLTAVCVINCEKLEALLN-GIHRLTSHQ  252 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~-~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~  252 (357)
                      ++.|+.|+++.+ .+..+ ++++...++|+.|++++ +.+..++++.+. ...|++|.+++ +.+..+.+ .+..+++|+
T Consensus       292 Lt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  292 LTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLH  368 (873)
T ss_pred             cchhhhhccchh-hhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhh
Confidence            778888888874 45544 56666778888888886 678888775443 23788888877 55666654 467788999


Q ss_pred             ceeeccCcCcccc------CCCCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcce
Q 037573          253 QLTVEQCPGIVAI------PENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTR  326 (357)
Q Consensus       253 ~L~l~~c~~l~~l------~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~  326 (357)
                      .|+++. +.+.-.      +..+ +++|++|++.| |+++.++..++..+++|++|++.+  +.+.++....+.+-.|++
T Consensus       369 ~LdLr~-N~ls~~IEDaa~~f~g-l~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~--NaiaSIq~nAFe~m~Lk~  443 (873)
T KOG4194|consen  369 KLDLRS-NELSWCIEDAAVAFNG-LPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD--NAIASIQPNAFEPMELKE  443 (873)
T ss_pred             hhcCcC-CeEEEEEecchhhhcc-chhhhheeecC-ceeeecchhhhccCcccceecCCC--Ccceeecccccccchhhh
Confidence            998876 333221      1123 78999999999 899999988899999999999998  888888555545668888


Q ss_pred             Eecc
Q 037573          327 LWIR  330 (357)
Q Consensus       327 L~l~  330 (357)
                      |.+.
T Consensus       444 Lv~n  447 (873)
T KOG4194|consen  444 LVMN  447 (873)
T ss_pred             hhhc
Confidence            8766

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.35  E-value=3e-13  Score=126.68  Aligned_cols=177  Identities=17%  Similarity=0.272  Sum_probs=90.2

Q ss_pred             CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCccc-ccccCC
Q 037573          123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCL-PHELHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~  199 (357)
                      .++++|+++++. ++.+.. .+..+.+|..|.++. +.+..+|...+ +      +++|+.|++.++ .+..+ -..+..
T Consensus       173 ~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~------L~~L~~LdLnrN-~irive~ltFqg  243 (873)
T KOG4194|consen  173 VNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKR------LPKLESLDLNRN-RIRIVEGLTFQG  243 (873)
T ss_pred             CCceEEeecccc-ccccccccccccchheeeeccc-CcccccCHHHhhh------cchhhhhhcccc-ceeeehhhhhcC
Confidence            567777776654 344322 355566666666666 45666665443 4      566666666553 22222 122444


Q ss_pred             CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCCCCcc
Q 037573          200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLT  275 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~  275 (357)
                      +++|+.|.+.. +.+..+..|.+ -+.++++|+++. +.+..+- .++.++++|++|+++. +.+..+...  .+.++|+
T Consensus       244 L~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~  320 (873)
T KOG4194|consen  244 LPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLK  320 (873)
T ss_pred             chhhhhhhhhh-cCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccch-hhhheeecchhhhcccce
Confidence            55666655554 34444443322 123556666544 2333332 2445555666666655 344444333  3355566


Q ss_pred             eEEecCCCCceecccccccccCCccEEEEeccCCCCCcC
Q 037573          276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF  314 (357)
Q Consensus       276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l  314 (357)
                      .|+++. |.++.+++.++..+..|++|.+++  +.+..+
T Consensus       321 ~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~--Nsi~~l  356 (873)
T KOG4194|consen  321 ELDLSS-NRITRLDEGSFRVLSQLEELNLSH--NSIDHL  356 (873)
T ss_pred             eEeccc-cccccCChhHHHHHHHhhhhcccc--cchHHH
Confidence            666655 555555555555555555555554  444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.20  E-value=2.4e-13  Score=108.89  Aligned_cols=160  Identities=19%  Similarity=0.251  Sum_probs=100.5

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      +..+.+..+|.++++ ++..+|..+..+.+|+.|++.+ ..++.+|..+..      +++|+.|++.- +.+..+|.+++
T Consensus        29 Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~iss------l~klr~lnvgm-nrl~~lprgfg   99 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISS------LPKLRILNVGM-NRLNILPRGFG   99 (264)
T ss_pred             ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhh------chhhhheecch-hhhhcCccccC
Confidence            445567777777775 3666777777777777777776 567777777666      77777777764 45666777777


Q ss_pred             CCCCccEEEecCCCCC-cccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcce
Q 037573          199 KLSRLQQIEIRNCPSL-VSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTI  276 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~  276 (357)
                      .+|-|+.|++....-- .++|...+-++.|+.|++.+ +..+.+|..++++++||.|.+.+ +.+-.+|.+ +-+..|+.
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lre  177 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRE  177 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHH
Confidence            7777777777653211 12333333344566666655 44566666666777777776666 345555554 44556666


Q ss_pred             EEecCCCCceeccc
Q 037573          277 LKITDVNIFKSLFQ  290 (357)
Q Consensus       277 L~l~~c~~l~~~~~  290 (357)
                      |.+.+ +.++.+|+
T Consensus       178 lhiqg-nrl~vlpp  190 (264)
T KOG0617|consen  178 LHIQG-NRLTVLPP  190 (264)
T ss_pred             Hhccc-ceeeecCh
Confidence            66666 55555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.20  E-value=6.1e-12  Score=128.28  Aligned_cols=86  Identities=17%  Similarity=0.242  Sum_probs=76.9

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      |..++.|+.|++++|..+.++|..++.|-+||+|++++ +.+..+|.++.+      +.+|.+|++..+..+..+|..+.
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~------Lk~L~~Lnl~~~~~l~~~~~i~~  639 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGN------LKKLIYLNLEVTGRLESIPGILL  639 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHH------HHhhheeccccccccccccchhh
Confidence            77799999999999999999999999999999999998 689999998887      88999999998887777776666


Q ss_pred             CCCCccEEEecCC
Q 037573          199 KLSRLQQIEIRNC  211 (357)
Q Consensus       199 ~l~~L~~L~l~~c  211 (357)
                      .+++|++|.+...
T Consensus       640 ~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  640 ELQSLRVLRLPRS  652 (889)
T ss_pred             hcccccEEEeecc
Confidence            7999999988753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.20  E-value=5.2e-13  Score=126.12  Aligned_cols=249  Identities=17%  Similarity=0.220  Sum_probs=179.4

Q ss_pred             CcccceEEeeccCCCCCCCCc-cccccchhHHHhhhcccccccchhhhhh-hccCCcccccc---ccccccCCcccccCC
Q 037573           48 STSKAWKLIIRTCCSNFNTPS-LMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSK---KVGQRLSTTSVIQVL  122 (357)
Q Consensus        48 ~~~~l~~l~l~~c~~~~~~~~-l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~---~~~~~~~~~~~~~~l  122 (357)
                      ..+++-+|++++......+.+ +.++..|-++.++. .+++.++.+...+ .+.++..+...   +....      +..+
T Consensus       124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ------LPsm  196 (1255)
T KOG0444|consen  124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ------LPSM  196 (1255)
T ss_pred             hhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc------Cccc
Confidence            446788888887653333333 45777777777765 4577777776444 23322211111   01111      2234


Q ss_pred             CcccEEeeccCcC-ccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573          123 CRLKYLELIDCEC-LVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS  201 (357)
Q Consensus       123 ~~L~~L~l~~~~~-l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~  201 (357)
                      +.|+.|.+++... +..+|.++..+.+|+.++++. +++..+|....+      +++|++|+++++ .++.+.-..+...
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~------l~~LrrLNLS~N-~iteL~~~~~~W~  268 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYK------LRNLRRLNLSGN-KITELNMTEGEWE  268 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhh------hhhhheeccCcC-ceeeeeccHHHHh
Confidence            5666666765432 344888888899999999985 778888877666      889999999984 5777766677778


Q ss_pred             CccEEEecCCCCCcccCCCCCCCCCcceEEeccCC-cchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEe
Q 037573          202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCE-KLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKI  279 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l  279 (357)
                      +|+.|+++. +.++.+|...+..+.|+.|...++. ..+.+|++++++..|+.+...+ +.++-+|++ ..+..|+.|.+
T Consensus       269 ~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L  346 (1255)
T KOG0444|consen  269 NLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL  346 (1255)
T ss_pred             hhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc
Confidence            899999997 6888899876666689988876533 2368899999999999999987 688888887 44889999999


Q ss_pred             cCCCCceecccccccccCCccEEEEeccCCCCCcCCC
Q 037573          280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQ  316 (357)
Q Consensus       280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~  316 (357)
                      +. |.+..+|+. +..++.|+.|++.. .+++..-|.
T Consensus       347 ~~-NrLiTLPea-IHlL~~l~vLDlre-NpnLVMPPK  380 (1255)
T KOG0444|consen  347 DH-NRLITLPEA-IHLLPDLKVLDLRE-NPNLVMPPK  380 (1255)
T ss_pred             cc-cceeechhh-hhhcCCcceeeccC-CcCccCCCC
Confidence            76 888878764 88899999999998 899877664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.20  E-value=2.9e-11  Score=121.59  Aligned_cols=179  Identities=21%  Similarity=0.326  Sum_probs=85.3

Q ss_pred             cccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCc
Q 037573          124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRL  203 (357)
Q Consensus       124 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L  203 (357)
                      +|+.|++++|. +..+|..+.  .+|+.|++++ +++..+|..+        .++|+.|++++| .+..+|..+.  ++|
T Consensus       242 ~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l--------~~sL~~L~Ls~N-~Lt~LP~~lp--~sL  306 (754)
T PRK15370        242 TIQEMELSINR-ITELPERLP--SALQSLDLFH-NKISCLPENL--------PEELRYLSVYDN-SIRTLPAHLP--SGI  306 (754)
T ss_pred             cccEEECcCCc-cCcCChhHh--CCCCEEECcC-CccCcccccc--------CCCCcEEECCCC-ccccCcccch--hhH
Confidence            45555555543 344444332  3455555553 3444444332        235555555553 3444544332  345


Q ss_pred             cEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCC
Q 037573          204 QQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVN  283 (357)
Q Consensus       204 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  283 (357)
                      +.|++++ ..+..+|....+  +|+.|++++|. ++.+|..+.  ++|+.|++++| .+..+|. ..+++|+.|++++ +
T Consensus       307 ~~L~Ls~-N~Lt~LP~~l~~--sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~-N  377 (754)
T PRK15370        307 THLNVQS-NSLTALPETLPP--GLKTLEAGENA-LTSLPASLP--PELQVLDVSKN-QITVLPE-TLPPTITTLDVSR-N  377 (754)
T ss_pred             HHHHhcC-CccccCCccccc--cceeccccCCc-cccCChhhc--CcccEEECCCC-CCCcCCh-hhcCCcCEEECCC-C
Confidence            5555554 244444433222  56666665543 445554332  45666666653 4444543 2345666666666 3


Q ss_pred             CceecccccccccCCccEEEEeccCCCCCcCCCCCC----CCCCcceEeccc
Q 037573          284 IFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI----GSTSLTRLWIRD  331 (357)
Q Consensus       284 ~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~----~~~sL~~L~l~~  331 (357)
                      .++.+|+. +  ..+|+.|++++  +.+..+|..+.    ..+++..|++.+
T Consensus       378 ~Lt~LP~~-l--~~sL~~LdLs~--N~L~~LP~sl~~~~~~~~~l~~L~L~~  424 (754)
T PRK15370        378 ALTNLPEN-L--PAALQIMQASR--NNLVRLPESLPHFRGEGPQPTRIIVEY  424 (754)
T ss_pred             cCCCCCHh-H--HHHHHHHhhcc--CCcccCchhHHHHhhcCCCccEEEeeC
Confidence            45544432 1  12456666665  45555554321    124445555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.19  E-value=9.3e-11  Score=117.95  Aligned_cols=184  Identities=21%  Similarity=0.277  Sum_probs=113.1

Q ss_pred             CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573          123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR  202 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  202 (357)
                      ++|+.|+++++ .+..+|..+  .++|++|+++++ .+..+|...        .++|+.|++++|. +..+|..+.  .+
T Consensus       199 ~~L~~L~Ls~N-~LtsLP~~l--~~nL~~L~Ls~N-~LtsLP~~l--------~~~L~~L~Ls~N~-L~~LP~~l~--s~  263 (754)
T PRK15370        199 EQITTLILDNN-ELKSLPENL--QGNIKTLYANSN-QLTSIPATL--------PDTIQEMELSINR-ITELPERLP--SA  263 (754)
T ss_pred             cCCcEEEecCC-CCCcCChhh--ccCCCEEECCCC-ccccCChhh--------hccccEEECcCCc-cCcCChhHh--CC
Confidence            46777888776 466777644  357888888774 566666543        3467788887753 567776653  46


Q ss_pred             ccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCC
Q 037573          203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDV  282 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c  282 (357)
                      |+.|++++ ..+..+|....+  +|+.|++++| .++.+|..+.  ++|++|++++ +.+..+|.. .+++|+.|++++ 
T Consensus       264 L~~L~Ls~-N~L~~LP~~l~~--sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l~~sL~~L~Ls~-  334 (754)
T PRK15370        264 LQSLDLFH-NKISCLPENLPE--ELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS-NSLTALPET-LPPGLKTLEAGE-  334 (754)
T ss_pred             CCEEECcC-CccCccccccCC--CCcEEECCCC-ccccCcccch--hhHHHHHhcC-CccccCCcc-ccccceeccccC-
Confidence            78888874 567777654433  7888888775 4666654332  3566677766 355555532 345677777766 


Q ss_pred             CCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccc
Q 037573          283 NIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYI  338 (357)
Q Consensus       283 ~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l  338 (357)
                      +.++.++.. +  .++|+.|++++  +.+..+|..+  +++|++|+++++ .|+.+
T Consensus       335 N~Lt~LP~~-l--~~sL~~L~Ls~--N~L~~LP~~l--p~~L~~LdLs~N-~Lt~L  382 (754)
T PRK15370        335 NALTSLPAS-L--PPELQVLDVSK--NQITVLPETL--PPTITTLDVSRN-ALTNL  382 (754)
T ss_pred             CccccCChh-h--cCcccEEECCC--CCCCcCChhh--cCCcCEEECCCC-cCCCC
Confidence            345555432 2  35677777776  3566666533  456777777665 34444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.18  E-value=4.4e-13  Score=131.50  Aligned_cols=136  Identities=21%  Similarity=0.294  Sum_probs=71.2

Q ss_pred             cccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCccccee
Q 037573          176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLT  255 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~  255 (357)
                      ..+|++++++. ..+..+|++++.+.+|+.+++.. +.++.+|...++..+|+.|.+.. +.++.+|...+.+++|++|+
T Consensus       240 p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISH-NNLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecch-hhhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeee
Confidence            44677777776 35677787788788888887765 34444444333332333333322 12233333333333333333


Q ss_pred             eccCcCccc---------------------------------------------------cCCCCCCCCcceEEecCCCC
Q 037573          256 VEQCPGIVA---------------------------------------------------IPENDYPTNLTILKITDVNI  284 (357)
Q Consensus       256 l~~c~~l~~---------------------------------------------------l~~~~~~~~L~~L~l~~c~~  284 (357)
                      +.. +++..                                                   +|......+|+.|++++ |.
T Consensus       317 L~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-Nr  394 (1081)
T KOG0618|consen  317 LQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NR  394 (1081)
T ss_pred             ehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cc
Confidence            322 11111                                                   11111235677777777 66


Q ss_pred             ceecccccccccCCccEEEEeccCCCCCcCCCCC
Q 037573          285 FKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE  318 (357)
Q Consensus       285 l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~  318 (357)
                      +.++|...+..++.|++|+++|  +.|+.+|...
T Consensus       395 L~~fpas~~~kle~LeeL~LSG--NkL~~Lp~tv  426 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSG--NKLTTLPDTV  426 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhccc--chhhhhhHHH
Confidence            6666666666677777777776  5666655444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.18  E-value=6e-13  Score=106.65  Aligned_cols=160  Identities=22%  Similarity=0.332  Sum_probs=132.1

Q ss_pred             cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC--C
Q 037573          143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE--R  220 (357)
Q Consensus       143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~--~  220 (357)
                      +-.+.+...|.+++ .++..+|+.+..      +.+|+.|++++ +.++.+|..++.+++|+.|++.- ..+..+|.  +
T Consensus        29 Lf~~s~ITrLtLSH-NKl~~vppnia~------l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfg   99 (264)
T KOG0617|consen   29 LFNMSNITRLTLSH-NKLTVVPPNIAE------LKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFG   99 (264)
T ss_pred             ccchhhhhhhhccc-CceeecCCcHHH------hhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccC
Confidence            44667788888998 688889988877      89999999998 46899999999999999999984 67777776  4


Q ss_pred             CCCCCCcceEEeccCCcc-hhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCC
Q 037573          221 GLPSTNLTAVCVINCEKL-EALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNS  298 (357)
Q Consensus       221 ~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~  298 (357)
                      .+|  .|+.|++..++.- ..+|..+..++.|+-|++++ +.++.+|.. +-+.+|+-|.+++ +.+-++|.. ++.+..
T Consensus       100 s~p--~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~  174 (264)
T KOG0617|consen  100 SFP--ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTR  174 (264)
T ss_pred             CCc--hhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHH
Confidence            556  9999999875432 46788888889999999998 578888776 6689999999999 777777765 889999


Q ss_pred             ccEEEEeccCCCCCcCCCCC
Q 037573          299 LKELIVNGEFPDMISFPQEE  318 (357)
Q Consensus       299 L~~L~l~~~c~~l~~l~~~~  318 (357)
                      |++|++.+  +++..+|.++
T Consensus       175 lrelhiqg--nrl~vlppel  192 (264)
T KOG0617|consen  175 LRELHIQG--NRLTVLPPEL  192 (264)
T ss_pred             HHHHhccc--ceeeecChhh
Confidence            99999998  8888877644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.14  E-value=2.6e-10  Score=114.37  Aligned_cols=113  Identities=24%  Similarity=0.331  Sum_probs=65.9

Q ss_pred             CccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecC
Q 037573          202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITD  281 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~  281 (357)
                      +|+.|++++ +.++.+|.  .+ .+|+.|++++ +.+..+|..   ..+|+.|++++ +.++.+|.  .+++|+.|++++
T Consensus       343 ~Lq~LdLS~-N~Ls~LP~--lp-~~L~~L~Ls~-N~L~~LP~l---~~~L~~LdLs~-N~Lt~LP~--l~s~L~~LdLS~  411 (788)
T PRK15387        343 GLQELSVSD-NQLASLPT--LP-SELYKLWAYN-NRLTSLPAL---PSGLKELIVSG-NRLTSLPV--LPSELKELMVSG  411 (788)
T ss_pred             ccceEecCC-CccCCCCC--CC-cccceehhhc-cccccCccc---ccccceEEecC-CcccCCCC--cccCCCEEEccC
Confidence            556666665 35555553  12 2556665554 334455432   24566777766 35555554  245677777777


Q ss_pred             CCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          282 VNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       282 c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                       +.++.+|.    ...+|+.|++.+  +.+..+|..+..+++|+.|++++.
T Consensus       412 -N~LssIP~----l~~~L~~L~Ls~--NqLt~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        412 -NRLTSLPM----LPSGLLSLSVYR--NQLTRLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             -CcCCCCCc----chhhhhhhhhcc--CcccccChHHhhccCCCeEECCCC
Confidence             55665542    134566777776  667777776666777777777754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.09  E-value=1.2e-11  Score=121.73  Aligned_cols=194  Identities=21%  Similarity=0.308  Sum_probs=116.0

Q ss_pred             CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573          123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR  202 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  202 (357)
                      .+|++++++... +..+|+.++.+.+|..+.+.. +.+..+|..++.      .++|+.|.+..| .++++|.....+.+
T Consensus       241 ~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~------~~~L~~l~~~~n-el~yip~~le~~~s  311 (1081)
T KOG0618|consen  241 LNLQYLDISHNN-LSNLPEWIGACANLEALNANH-NRLVALPLRISR------ITSLVSLSAAYN-ELEYIPPFLEGLKS  311 (1081)
T ss_pred             ccceeeecchhh-hhcchHHHHhcccceEecccc-hhHHhhHHHHhh------hhhHHHHHhhhh-hhhhCCCcccccce
Confidence            577788887753 677777777888888888876 566777766654      455555555553 35555555555555


Q ss_pred             ccEEEecCCCCCcccCCCCC----------------------------------------------C----CCCcceEEe
Q 037573          203 LQQIEIRNCPSLVSFPERGL----------------------------------------------P----STNLTAVCV  232 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~----------------------------------------------~----~~~L~~L~l  232 (357)
                      |+.|++.. .++..+|...+                                              |    +.+|+.|++
T Consensus       312 L~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  312 LRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            55555553 33433333100                                              0    135555555


Q ss_pred             ccCCcchhhHh-hhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCC
Q 037573          233 INCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPD  310 (357)
Q Consensus       233 ~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~  310 (357)
                      +. +.+.++|. .+.++..|++|+++| ++++.+|.. ..+..|++|...+ |.+..+|+  +..++.|+.++++  |++
T Consensus       391 sy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe--~~~l~qL~~lDlS--~N~  463 (1081)
T KOG0618|consen  391 SY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPE--LAQLPQLKVLDLS--CNN  463 (1081)
T ss_pred             cc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeechh--hhhcCcceEEecc--cch
Confidence            44 33455543 345555666666666 456655543 2355666666555 55665652  5778888888888  588


Q ss_pred             CCcCCCCCCCC-CCcceEecccCc
Q 037573          311 MISFPQEEIGS-TSLTRLWIRDFQ  333 (357)
Q Consensus       311 l~~l~~~~~~~-~sL~~L~l~~c~  333 (357)
                      +..+--....| |.|++|++++=.
T Consensus       464 L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  464 LSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhhhhhCCCcccceeeccCCc
Confidence            87653333345 889999888643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.09  E-value=1e-09  Score=110.13  Aligned_cols=179  Identities=27%  Similarity=0.377  Sum_probs=86.6

Q ss_pred             CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccc-----------cccccEEEeeCCCCCc
Q 037573          123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAI-----------ITSFENIMVNGCDNLK  191 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~-----------l~~L~~L~l~~c~~l~  191 (357)
                      ++|+.|.+.++ .++.+|.   ..++|++|++++ +.+..+|....+|++|.+           +++|+.|+++++ .+.
T Consensus       222 ~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~-N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N-~Lt  295 (788)
T PRK15387        222 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSG-NQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLT  295 (788)
T ss_pred             cCCCEEEccCC-cCCCCCC---CCCCCcEEEecC-CccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCC-ccc
Confidence            36777777765 3666665   256777777776 356666654323333221           234555555553 344


Q ss_pred             ccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCC
Q 037573          192 CLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYP  271 (357)
Q Consensus       192 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~  271 (357)
                      .+|..   +++|+.|+++++ .+..+|.  .+ .+|+.|++++| .++.+|.   ...+|++|++++ +.++.+|.  .+
T Consensus       296 ~LP~~---p~~L~~LdLS~N-~L~~Lp~--lp-~~L~~L~Ls~N-~L~~LP~---lp~~Lq~LdLS~-N~Ls~LP~--lp  361 (788)
T PRK15387        296 SLPVL---PPGLQELSVSDN-QLASLPA--LP-SELCKLWAYNN-QLTSLPT---LPSGLQELSVSD-NQLASLPT--LP  361 (788)
T ss_pred             ccccc---ccccceeECCCC-ccccCCC--Cc-ccccccccccC-ccccccc---cccccceEecCC-CccCCCCC--CC
Confidence            44432   245666666553 4444443  11 24444554442 2333432   113456666655 34555543  23


Q ss_pred             CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      .+|+.|++++ +.++.++.    ..++|+.|++++  +.+..+|.   .+++|+.|++++
T Consensus       362 ~~L~~L~Ls~-N~L~~LP~----l~~~L~~LdLs~--N~Lt~LP~---l~s~L~~LdLS~  411 (788)
T PRK15387        362 SELYKLWAYN-NRLTSLPA----LPSGLKELIVSG--NRLTSLPV---LPSELKELMVSG  411 (788)
T ss_pred             cccceehhhc-cccccCcc----cccccceEEecC--CcccCCCC---cccCCCEEEccC
Confidence            4455555544 34443332    123455555554  34555543   234455555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.85  E-value=2e-08  Score=93.12  Aligned_cols=38  Identities=24%  Similarity=0.680  Sum_probs=18.2

Q ss_pred             cccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCccc
Q 037573          178 SFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSF  217 (357)
Q Consensus       178 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l  217 (357)
                      +|+.|.+++|..+..+|..+  .++|++|.+++|..+..+
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc
Confidence            45555555555554444433  134555555555444433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.76  E-value=3.4e-09  Score=97.35  Aligned_cols=39  Identities=28%  Similarity=0.270  Sum_probs=18.1

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCC---CCcCEEeecCC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCL---SSLTEITVAGC  157 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l---~~L~~L~i~~c  157 (357)
                      +..+++|++|++++|......+..+..+   ++|++|++++|
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~  118 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN  118 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC
Confidence            3445566666666554332222222222   23666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.72  E-value=4.3e-08  Score=90.96  Aligned_cols=139  Identities=22%  Similarity=0.383  Sum_probs=92.3

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      +..+.+++.|++++| .+..+|.   --.+|+.|.+++|..+..+|..+        .++|+.|++++|..+..+|..  
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--------P~nLe~L~Ls~Cs~L~sLP~s--  113 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--------PEGLEKLTVCHCPEISGLPES--  113 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--------hhhhhheEccCcccccccccc--
Confidence            445689999999999 6888883   23469999999999998888643        569999999999888888754  


Q ss_pred             CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEE
Q 037573          199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILK  278 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~  278 (357)
                          |+.|++.+ .....+  ..+| ++|+.|.+.++......+....-.++|++|++++|..+. +| ..+|.+|+.|.
T Consensus       114 ----Le~L~L~~-n~~~~L--~~LP-ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP-~~LP~SLk~L~  183 (426)
T PRK15386        114 ----VRSLEIKG-SATDSI--KNVP-NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LP-EKLPESLQSIT  183 (426)
T ss_pred             ----cceEEeCC-CCCccc--ccCc-chHhheeccccccccccccccccCCcccEEEecCCCccc-Cc-ccccccCcEEE
Confidence                56666653 332223  2344 378888875533221110000112578888888876443 34 23567888888


Q ss_pred             ecC
Q 037573          279 ITD  281 (357)
Q Consensus       279 l~~  281 (357)
                      ++.
T Consensus       184 ls~  186 (426)
T PRK15386        184 LHI  186 (426)
T ss_pred             ecc
Confidence            765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.66  E-value=4.4e-10  Score=101.21  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             CcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEE
Q 037573          226 NLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKEL  302 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L  302 (357)
                      +|+.|++++ +.++.+ +.++.+..+++.|.+.+ ++++.+....+  +..|++|++++ |+++.+.+..+..+.+|.+|
T Consensus       275 ~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  275 NLRKLNLSN-NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             cceEeccCC-CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeee
Confidence            777777755 445554 33566677777777766 56665554432  56677777777 66776666556666777777


Q ss_pred             EEec
Q 037573          303 IVNG  306 (357)
Q Consensus       303 ~l~~  306 (357)
                      ++-.
T Consensus       352 ~l~~  355 (498)
T KOG4237|consen  352 NLLS  355 (498)
T ss_pred             ehcc
Confidence            7654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.61  E-value=1.9e-08  Score=103.04  Aligned_cols=210  Identities=18%  Similarity=0.186  Sum_probs=138.5

Q ss_pred             CCcccEEeeccCcC-cccccc-ccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCC
Q 037573          122 LCRLKYLELIDCEC-LVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHK  199 (357)
Q Consensus       122 l~~L~~L~l~~~~~-l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~  199 (357)
                      .++|+.|-+.+... +..++. .+..++.|+.|++++|.++..+|..++.      +-+|++|+++++ .+..+|.++++
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~------Li~LryL~L~~t-~I~~LP~~l~~  616 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE------LVHLRYLDLSDT-GISHLPSGLGN  616 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh------hhhhhcccccCC-CccccchHHHH
Confidence            45788888877653 445444 3777999999999999999999999988      999999999985 68899999999


Q ss_pred             CCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCC-cc-hhhHhhhccCCcccceeeccCcC----------------
Q 037573          200 LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCE-KL-EALLNGIHRLTSHQQLTVEQCPG----------------  261 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-~l-~~l~~~~~~l~~L~~L~l~~c~~----------------  261 (357)
                      +..|.+|++.....+..++.....+.+|++|.+..-. .. ...-..+..+.+|+.+.+..++.                
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~  696 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLL  696 (889)
T ss_pred             HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHh
Confidence            9999999999887777775433334599999886533 11 11223445666666666654332                


Q ss_pred             ----------ccccCCCCCCCCcceEEecCCCCceecccc----cccc-cCCccEEEEeccCCCCCcCCCCCCCCCCcce
Q 037573          262 ----------IVAIPENDYPTNLTILKITDVNIFKSLFQW----GLHR-LNSLKELIVNGEFPDMISFPQEEIGSTSLTR  326 (357)
Q Consensus       262 ----------l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~----~l~~-l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~  326 (357)
                                .+..+..+.+.+|+.|.+.+|...+....+    .... ++++..+.+.+ |..+..+-.. .++|+|+.
T Consensus       697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~-~~~~r~l~~~-~f~~~L~~  774 (889)
T KOG4658|consen  697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN-CHMLRDLTWL-LFAPHLTS  774 (889)
T ss_pred             HhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc-cccccccchh-hccCcccE
Confidence                      111111123566777777776554321111    0011 33455555555 5555544322 37889999


Q ss_pred             EecccCcccccccc
Q 037573          327 LWIRDFQNLEYISS  340 (357)
Q Consensus       327 L~l~~c~~L~~l~~  340 (357)
                      |.+.+|+.++..-.
T Consensus       775 l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  775 LSLVSCRLLEDIIP  788 (889)
T ss_pred             EEEecccccccCCC
Confidence            99998888877643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.59  E-value=2e-08  Score=92.19  Aligned_cols=207  Identities=17%  Similarity=0.083  Sum_probs=121.5

Q ss_pred             ccCCCcccEEeeccCcCc------cccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCC--
Q 037573          119 IQVLCRLKYLELIDCECL------VNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNL--  190 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l------~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l--  190 (357)
                      +...++++++.++++..-      ..++..+..+++|++|++++|..-...+..+..+..   -++|+.|++++|...  
T Consensus        47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---~~~L~~L~ls~~~~~~~  123 (319)
T cd00116          47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR---SSSLQELKLNNNGLGDR  123 (319)
T ss_pred             HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc---cCcccEEEeeCCccchH
Confidence            344567888888775432      224455677889999999987643333333222000   134999999987533  


Q ss_pred             --cccccccCCC-CCccEEEecCCCCCc----ccCCCCCCCCCcceEEeccCCcc----hhhHhhhccCCcccceeeccC
Q 037573          191 --KCLPHELHKL-SRLQQIEIRNCPSLV----SFPERGLPSTNLTAVCVINCEKL----EALLNGIHRLTSHQQLTVEQC  259 (357)
Q Consensus       191 --~~lp~~l~~l-~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~l~~c  259 (357)
                        ..+...+..+ ++|+.|++++|.-..    .++.....+++|++|++++|.--    ..++..+..+++|++|++++|
T Consensus       124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  203 (319)
T cd00116         124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN  203 (319)
T ss_pred             HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence              1233455566 889999999875321    11111111237999999886532    234445666789999999886


Q ss_pred             cCccc-----cCCC-CCCCCcceEEecCCCCceeccccccc-----ccCCccEEEEeccCCCCC-----cCCCCCCCCCC
Q 037573          260 PGIVA-----IPEN-DYPTNLTILKITDVNIFKSLFQWGLH-----RLNSLKELIVNGEFPDMI-----SFPQEEIGSTS  323 (357)
Q Consensus       260 ~~l~~-----l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~-----~l~~L~~L~l~~~c~~l~-----~l~~~~~~~~s  323 (357)
                      . +..     +... ...++|++|++++| .++......+.     ..+.|++|++.+ | .++     .+.......++
T Consensus       204 ~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~-n-~i~~~~~~~l~~~~~~~~~  279 (319)
T cd00116         204 G-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSC-N-DITDDGAKDLAEVLAEKES  279 (319)
T ss_pred             c-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccC-C-CCCcHHHHHHHHHHhcCCC
Confidence            3 321     1111 22578999999984 45531111111     237899999998 5 443     12222223468


Q ss_pred             cceEecccC
Q 037573          324 LTRLWIRDF  332 (357)
Q Consensus       324 L~~L~l~~c  332 (357)
                      |+++++++.
T Consensus       280 L~~l~l~~N  288 (319)
T cd00116         280 LLELDLRGN  288 (319)
T ss_pred             ccEEECCCC
Confidence            888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.53  E-value=2.5e-09  Score=97.04  Aligned_cols=181  Identities=17%  Similarity=0.272  Sum_probs=96.0

Q ss_pred             CcccEEeeccCcCccccc--cccCCCCCcCEEeecCCCcchhccccccccccccc-cccccEEEeeCCCCCccccc--cc
Q 037573          123 CRLKYLELIDCECLVNLP--QALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAI-ITSFENIMVNGCDNLKCLPH--EL  197 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~-l~~L~~L~l~~c~~l~~lp~--~l  197 (357)
                      ..|+.|.+.||.....-+  .....++++..|.+.+|.++....-     .++.. +++|+.|++..|..++...-  ..
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~-----~sla~~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL-----LSLARYCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH-----HHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence            467778888887655522  2345678888888888876653211     11111 77888888888776654321  12


Q ss_pred             CCCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcch--hhHhhhccCCcccceeeccCcCccccCC---C
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLE--ALLNGIHRLTSHQQLTVEQCPGIVAIPE---N  268 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~---~  268 (357)
                      ..+++|++|+++.|+.+..-..    .+..  .++.+...||..++  .+-..-.....+..+++..|..+++...   .
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~--~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCK--ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccch--hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence            2367888888888877765111    2222  45555555665432  2211122334444555555544443211   0


Q ss_pred             CCCCCcceEEecCCCCceeccccccc-ccCCccEEEEeccCCCC
Q 037573          269 DYPTNLTILKITDVNIFKSLFQWGLH-RLNSLKELIVNGEFPDM  311 (357)
Q Consensus       269 ~~~~~L~~L~l~~c~~l~~~~~~~l~-~l~~L~~L~l~~~c~~l  311 (357)
                      ..+..|+.+..++|++++..+.|.++ +.++|+.+.+.+ |.++
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~-c~~f  333 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSG-CQQF  333 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccc-cchh
Confidence            12345555555555555544444332 345555555555 5443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.31  E-value=2.8e-08  Score=90.45  Aligned_cols=134  Identities=16%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             CCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHh--hhccCCcccceeeccCcCcccc---CCCCCCC
Q 037573          200 LSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLN--GIHRLTSHQQLTVEQCPGIVAI---PENDYPT  272 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l---~~~~~~~  272 (357)
                      ...|+.+..++|..+...+.  -+..+++|+.+.+++|..++....  --.++++|+.+++.+|.....-   .....++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            34455666666655443322  111123666666666665543311  1134566666666665444322   1112356


Q ss_pred             CcceEEecCCCCceeccc----ccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccCcc
Q 037573          273 NLTILKITDVNIFKSLFQ----WGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDFQN  334 (357)
Q Consensus       273 ~L~~L~l~~c~~l~~~~~----~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c~~  334 (357)
                      .|+.+.++.|..+++...    .+-..+..|+.+++++ ||.+..- -+.....+.|+.+++.+|..
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n-~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN-CPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecC-CCCchHHHHHHHhhCcccceeeeechhh
Confidence            777777777766553210    0112345677777777 7766431 11111333444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.30  E-value=3.2e-08  Score=93.25  Aligned_cols=167  Identities=22%  Similarity=0.280  Sum_probs=99.7

Q ss_pred             EeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEE
Q 037573          128 LELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIE  207 (357)
Q Consensus       128 L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  207 (357)
                      .+++.+. ...+|..+..+..|..+.+.. +.+..+|..+.+      +..|..|+++.+ .+..+|..++.++ |+.|.
T Consensus        80 aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~------L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   80 ADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICN------LEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI  149 (722)
T ss_pred             hhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhh------hhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence            3444432 345565555566666666654 345556665555      666666666663 4566666666655 56666


Q ss_pred             ecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCc
Q 037573          208 IRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIF  285 (357)
Q Consensus       208 l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l  285 (357)
                      +++ ++++.+|+  +..+  .|..|+.+. +.+..+|..++.+.+|+.|.+.. +.+..+|.+-..-.|.+||++. |++
T Consensus       150 ~sN-Nkl~~lp~~ig~~~--tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfSc-Nki  223 (722)
T KOG0532|consen  150 VSN-NKLTSLPEEIGLLP--TLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSC-NKI  223 (722)
T ss_pred             Eec-CccccCCcccccch--hHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeeccc-Cce
Confidence            664 56666665  3333  666666644 44666666777777777777766 4566666653333566677764 666


Q ss_pred             eecccccccccCCccEEEEeccCCCCCc
Q 037573          286 KSLFQWGLHRLNSLKELIVNGEFPDMIS  313 (357)
Q Consensus       286 ~~~~~~~l~~l~~L~~L~l~~~c~~l~~  313 (357)
                      ..+|.. +..+..|++|-|.+  +=|++
T Consensus       224 s~iPv~-fr~m~~Lq~l~Len--NPLqS  248 (722)
T KOG0532|consen  224 SYLPVD-FRKMRHLQVLQLEN--NPLQS  248 (722)
T ss_pred             eecchh-hhhhhhheeeeecc--CCCCC
Confidence            666553 66677777777764  44544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.29  E-value=1.5e-07  Score=82.36  Aligned_cols=194  Identities=15%  Similarity=0.232  Sum_probs=118.3

Q ss_pred             ccCCCcccEEeeccCcCc------cc--cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCC-
Q 037573          119 IQVLCRLKYLELIDCECL------VN--LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDN-  189 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l------~~--lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~-  189 (357)
                      +..+..|.+|.+++...-      ..  +|-.+.-+.+|+.+.|+.|.. +.+-.....      -|.|+++.+.+... 
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~------kptl~t~~v~~s~~~  250 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELL------KPTLQTICVHNTTIQ  250 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeec------Cchhheeeeeccccc
Confidence            444678888888764321      11  344555678899999988753 221111001      34566666654220 


Q ss_pred             -Ccc-ccc--------------------ccCCCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhhh
Q 037573          190 -LKC-LPH--------------------ELHKLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNGI  245 (357)
Q Consensus       190 -l~~-lp~--------------------~l~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~  245 (357)
                       .+. +|.                    .+-..+.|+.+++++ +.++.+.+  ...|  .++.|+++. +.+..+ ..+
T Consensus       251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~-N~I~~iDESvKL~P--kir~L~lS~-N~i~~v-~nL  325 (490)
T KOG1259|consen  251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSG-NLITQIDESVKLAP--KLRRLILSQ-NRIRTV-QNL  325 (490)
T ss_pred             ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccc-cchhhhhhhhhhcc--ceeEEeccc-cceeee-hhh
Confidence             000 010                    112246788888887 56666655  3344  899999987 445655 357


Q ss_pred             ccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCC--CCCCCC
Q 037573          246 HRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQ--EEIGST  322 (357)
Q Consensus       246 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~--~~~~~~  322 (357)
                      .++++|++|++++ +.+..+-+- .-+.+.++|.+++ |.+++++  +++.+.+|.+|++.+  ++++.+..  .++.+|
T Consensus       326 a~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS--GL~KLYSLvnLDl~~--N~Ie~ldeV~~IG~LP  399 (490)
T KOG1259|consen  326 AELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ-NKIETLS--GLRKLYSLVNLDLSS--NQIEELDEVNHIGNLP  399 (490)
T ss_pred             hhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhh-hhHhhhh--hhHhhhhheeccccc--cchhhHHHhccccccc
Confidence            8889999999988 455554321 1256888999988 7777664  578889999999988  67766532  233444


Q ss_pred             CcceEecc
Q 037573          323 SLTRLWIR  330 (357)
Q Consensus       323 sL~~L~l~  330 (357)
                      .|+++.+.
T Consensus       400 CLE~l~L~  407 (490)
T KOG1259|consen  400 CLETLRLT  407 (490)
T ss_pred             HHHHHhhc
Confidence            55544443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.26  E-value=1.1e-06  Score=83.45  Aligned_cols=172  Identities=23%  Similarity=0.366  Sum_probs=108.0

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCC-CcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLS-SLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      +..+..++.|.+.+. .+..++.....+. +|+.|++++ ..+..+|.....      +++|+.|+++.+ .+..+|...
T Consensus       112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~------l~~L~~L~l~~N-~l~~l~~~~  182 (394)
T COG4886         112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRN------LPNLKNLDLSFN-DLSDLPKLL  182 (394)
T ss_pred             hhcccceeEEecCCc-ccccCccccccchhhcccccccc-cchhhhhhhhhc------cccccccccCCc-hhhhhhhhh
Confidence            344466777777654 3566666555553 777777776 566666544344      777777777774 466677666


Q ss_pred             CCCCCccEEEecCCCCCcccCCC-CCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcc
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPER-GLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLT  275 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~  275 (357)
                      +..++|+.|++++ ..+..+|.. ..+ ..|+++.+.+.. +...+..+..+..+..+.+.+ +.+..++.. +.+++++
T Consensus       183 ~~~~~L~~L~ls~-N~i~~l~~~~~~~-~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~  258 (394)
T COG4886         183 SNLSNLNNLDLSG-NKISDLPPEIELL-SALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLE  258 (394)
T ss_pred             hhhhhhhheeccC-CccccCchhhhhh-hhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhccccccc
Confidence            5677777777776 566667663 122 247777776643 334445566666677776544 445443332 3456677


Q ss_pred             eEEecCCCCceecccccccccCCccEEEEec
Q 037573          276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      +|++++ +.++.++.  +..+.++++|++++
T Consensus       259 ~L~~s~-n~i~~i~~--~~~~~~l~~L~~s~  286 (394)
T COG4886         259 TLDLSN-NQISSISS--LGSLTNLRELDLSG  286 (394)
T ss_pred             eecccc-cccccccc--ccccCccCEEeccC
Confidence            777777 66666554  56777777777776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.26  E-value=9.2e-07  Score=73.34  Aligned_cols=127  Identities=17%  Similarity=0.270  Sum_probs=43.2

Q ss_pred             ccCCCcccEEeeccCcCccccccccC-CCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALH-CLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      +.+..++++|++.++. +..+.. ++ .+.+|+.|+++++ .+..+.....       +++|+.|+++++ .+..++.++
T Consensus        15 ~~n~~~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~~l~~-------L~~L~~L~L~~N-~I~~i~~~l   83 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNN-QITKLEGLPG-------LPRLKTLDLSNN-RISSISEGL   83 (175)
T ss_dssp             ----------------------S---TT-TT--EEE-TTS---S--TT-----------TT--EEE--SS----S-CHHH
T ss_pred             cccccccccccccccc-cccccc-hhhhhcCCCEEECCCC-CCccccCccC-------hhhhhhcccCCC-CCCccccch
Confidence            3445577888888864 555543 55 5778888888874 5666553222       788888888874 577775555


Q ss_pred             C-CCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchh---hHhhhccCCcccceeeccC
Q 037573          198 H-KLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEA---LLNGIHRLTSHQQLTVEQC  259 (357)
Q Consensus       198 ~-~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~l~~c  259 (357)
                      . .+++|+.|++++ ..+.++..    ..+|  +|+.|++.+++-...   -..-+..+|+|+.||-...
T Consensus        84 ~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~--~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   84 DKNLPNLQELYLSN-NKISDLNELEPLSSLP--KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHH-TT--EEE-TT-S---SCCCCGGGGG-T--T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             HHhCCcCCEEECcC-CcCCChHHhHHHHcCC--CcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            3 578888888876 45555443    2344  888888887653221   1124566777777776553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=2.4e-07  Score=84.89  Aligned_cols=176  Identities=19%  Similarity=0.293  Sum_probs=78.9

Q ss_pred             ccCCCcccEEeeccCcCccc---cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCC-cccc
Q 037573          119 IQVLCRLKYLELIDCECLVN---LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNL-KCLP  194 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~---lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l-~~lp  194 (357)
                      ...|++++.|+++++- +..   +-.-+..||+|+.|+++. +.+..+..+-.   .. .+++|+.|.++.|... ..+-
T Consensus       142 ~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~---~~-~l~~lK~L~l~~CGls~k~V~  215 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNT---TL-LLSHLKQLVLNSCGLSWKDVQ  215 (505)
T ss_pred             hhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccccc-ccccCCccccc---hh-hhhhhheEEeccCCCCHHHHH
Confidence            4456666666666532 111   112234566666666664 23322211100   00 0556666666666421 1222


Q ss_pred             cccCCCCCccEEEecCCCCC--cccCCCCCCCCCcceEEeccCCcchhhH--hhhccCCcccceeeccCcCcccc--CCC
Q 037573          195 HELHKLSRLQQIEIRNCPSL--VSFPERGLPSTNLTAVCVINCEKLEALL--NGIHRLTSHQQLTVEQCPGIVAI--PEN  268 (357)
Q Consensus       195 ~~l~~l~~L~~L~l~~c~~l--~~l~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l--~~~  268 (357)
                      ..+..+|+|+.|++.+...+  ...+...+.  .|++|++++++.+ +++  ...+.++.|..|+++.| .+.++  |..
T Consensus       216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~--~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~  291 (505)
T KOG3207|consen  216 WILLTFPSLEVLYLEANEIILIKATSTKILQ--TLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDV  291 (505)
T ss_pred             HHHHhCCcHHHhhhhcccccceecchhhhhh--HHhhccccCCccc-ccccccccccccchhhhhcccc-CcchhcCCCc
Confidence            22334566666666654211  111222333  5666666664432 222  23455666666666553 23222  111


Q ss_pred             ------CCCCCcceEEecCCCCceeccc-ccccccCCccEEEEe
Q 037573          269 ------DYPTNLTILKITDVNIFKSLFQ-WGLHRLNSLKELIVN  305 (357)
Q Consensus       269 ------~~~~~L~~L~l~~c~~l~~~~~-~~l~~l~~L~~L~l~  305 (357)
                            ...++|+.|++.. |++...+. ..+..+++|++|.+.
T Consensus       292 ~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  292 ESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             cchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcc
Confidence                  1245666666665 44432211 123444555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.22  E-value=1.1e-06  Score=83.42  Aligned_cols=172  Identities=19%  Similarity=0.308  Sum_probs=104.5

Q ss_pred             cCCCCCcCEEeecCCCcchhccccccccccccccc-cccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCC-
Q 037573          143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIIT-SFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPER-  220 (357)
Q Consensus       143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~-~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~-  220 (357)
                      +..++.+..|.+.+ ..+..++.....      +. +|+.|++++ +.+..+|..++.+++|+.|++++ ..+..++.. 
T Consensus       112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~------~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~  182 (394)
T COG4886         112 LLELTNLTSLDLDN-NNITDIPPLIGL------LKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLL  182 (394)
T ss_pred             hhcccceeEEecCC-cccccCcccccc------chhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhh
Confidence            44556677777765 456666665553      42 777777776 35666666677777777777776 355666653 


Q ss_pred             -CCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCc
Q 037573          221 -GLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSL  299 (357)
Q Consensus       221 -~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L  299 (357)
                       ..+  +|+.|++++ +.+..+|..+.....|++|.+.+...+..........++..+.+.+ +.++..+. .+..++++
T Consensus       183 ~~~~--~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~-~~~~l~~l  257 (394)
T COG4886         183 SNLS--NLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPE-SIGNLSNL  257 (394)
T ss_pred             hhhh--hhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccc-hhcccccc
Confidence             333  777777766 4467776665566667777776632233222223345555555444 44443322 25667777


Q ss_pred             cEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          300 KELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       300 ~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      ++|++.+  +.+..++. .....++++|++++
T Consensus       258 ~~L~~s~--n~i~~i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         258 ETLDLSN--NQISSISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             ceecccc--cccccccc-ccccCccCEEeccC
Confidence            7777775  67777765 44566777777664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.16  E-value=4.9e-08  Score=88.29  Aligned_cols=209  Identities=16%  Similarity=0.230  Sum_probs=126.4

Q ss_pred             cccccCCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhcccccc-ccccccc------------------
Q 037573          116 TSVIQVLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAI------------------  175 (357)
Q Consensus       116 ~~~~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~------------------  175 (357)
                      +..|+.+.+|++|+|+.+. +.. -|.++..+++|-.|.+.+-.+|..+|+..+ .|..+..                  
T Consensus        84 ~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d  162 (498)
T KOG4237|consen   84 PGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD  162 (498)
T ss_pred             hhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence            4458889999999999875 444 567888899999988888788999998765 4222221                  


Q ss_pred             cccccEEEeeCCCCCccccc-ccCCCCCccEEEecCCCCC--cccC------------CCCCCCC---------------
Q 037573          176 ITSFENIMVNGCDNLKCLPH-ELHKLSRLQQIEIRNCPSL--VSFP------------ERGLPST---------------  225 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l--~~l~------------~~~~~~~---------------  225 (357)
                      +++|..|.+.+ +.+..++. .+..+.+++.+.+.-.+.+  -.+|            -++..+.               
T Consensus       163 L~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a  241 (498)
T KOG4237|consen  163 LPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA  241 (498)
T ss_pred             hhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccch
Confidence            44455555444 23344443 2333444444432211100  0000            0111110               


Q ss_pred             -----CcceE---EeccCCcchhhH-hhhccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceeccccccc
Q 037573          226 -----NLTAV---CVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLH  294 (357)
Q Consensus       226 -----~L~~L---~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~  294 (357)
                           +++.+   ....|.....-| ..++.+++|+.|++++ +.++.+....+  ...++.|.+.. |.++.+....+.
T Consensus       242 ~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~  319 (498)
T KOG4237|consen  242 RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQ  319 (498)
T ss_pred             hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhh
Confidence                 00000   000111111111 2467899999999988 68887766533  57899999988 888888777788


Q ss_pred             ccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecc
Q 037573          295 RLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIR  330 (357)
Q Consensus       295 ~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~  330 (357)
                      .++.|++|++++  +++..+ |..+....+|.+|.+-
T Consensus       320 ~ls~L~tL~L~~--N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  320 GLSGLKTLSLYD--NQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             ccccceeeeecC--CeeEEEecccccccceeeeeehc
Confidence            999999999999  888877 4444456677777654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1.6e-07  Score=82.05  Aligned_cols=176  Identities=16%  Similarity=0.086  Sum_probs=110.3

Q ss_pred             CcccEEeeccCcCccc--cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc--ccccC
Q 037573          123 CRLKYLELIDCECLVN--LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL--PHELH  198 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l--p~~l~  198 (357)
                      ..|++|+++... ++.  +-.-++.+..|+.|.+.|..--..+-..+..      =.+|+.|+++.|..+.+.  ...+.
T Consensus       185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk------N~~L~~lnlsm~sG~t~n~~~ll~~  257 (419)
T KOG2120|consen  185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK------NSNLVRLNLSMCSGFTENALQLLLS  257 (419)
T ss_pred             hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc------cccceeeccccccccchhHHHHHHH
Confidence            358888887643 333  2233556778888888774322222222222      457888898888776643  23456


Q ss_pred             CCCCccEEEecCCCCCcccC----CCCCCCCCcceEEeccCCcc---hhhHhhhccCCcccceeeccCcCccccCCC--C
Q 037573          199 KLSRLQQIEIRNCPSLVSFP----ERGLPSTNLTAVCVINCEKL---EALLNGIHRLTSHQQLTVEQCPGIVAIPEN--D  269 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~----~~~~~~~~L~~L~l~~c~~l---~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~  269 (357)
                      +++.|+.|+++.|.-....-    .+.-  ++|..|+++||..-   ..+.--...+++|.+|++++|..++.--..  .
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            68888888888875443221    1222  38888999888642   122223467889999999998777641000  1


Q ss_pred             CCCCcceEEecCCCCceecccccccccCCccEEEEeccC
Q 037573          270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEF  308 (357)
Q Consensus       270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c  308 (357)
                      -++.|++|.++.|-.+-.-....+...|+|.+|++.+ |
T Consensus       336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g-~  373 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG-C  373 (419)
T ss_pred             hcchheeeehhhhcCCChHHeeeeccCcceEEEEecc-c
Confidence            2678999999988766522222356788999999988 5

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=8.7e-07  Score=81.31  Aligned_cols=180  Identities=14%  Similarity=0.205  Sum_probs=83.8

Q ss_pred             CCCcccEEeeccCcCcccccc--ccCCCCCcCEEeecCCCcchhcc---ccccccccccccccccEEEeeCCCCCccccc
Q 037573          121 VLCRLKYLELIDCECLVNLPQ--ALHCLSSLTEITVAGCTKLVSFL---ELSSVAEMFAIITSFENIMVNGCDNLKCLPH  195 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~i~~c~~l~~~~---~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~  195 (357)
                      ++.+|+...+..+. +...+.  ....|++++.|++++ +-+....   .....      +|+|+.|+++.+. +...-.
T Consensus       119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eq------Lp~Le~LNls~Nr-l~~~~~  189 (505)
T KOG3207|consen  119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQ------LPSLENLNLSSNR-LSNFIS  189 (505)
T ss_pred             hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHh------cccchhccccccc-ccCCcc
Confidence            45666666666554 233331  344566777777665 2121111   11112      6667777766632 222111


Q ss_pred             c--cCCCCCccEEEecCCCCCc-ccCC--CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--
Q 037573          196 E--LHKLSRLQQIEIRNCPSLV-SFPE--RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--  268 (357)
Q Consensus       196 ~--l~~l~~L~~L~l~~c~~l~-~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--  268 (357)
                      +  -..+++|+.|.+++|.--. .+..  ..+|  +|+.|++.++..+..-.....-+..|+.|++++. .+..++..  
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP--sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~  266 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP--SLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYK  266 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCC--cHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccc
Confidence            1  1125566666666663210 0100  2344  6666666665322211112233455666666663 33333322  


Q ss_pred             -CCCCCcceEEecCCCCceecccccc------cccCCccEEEEeccCCCCCcCC
Q 037573          269 -DYPTNLTILKITDVNIFKSLFQWGL------HRLNSLKELIVNGEFPDMISFP  315 (357)
Q Consensus       269 -~~~~~L~~L~l~~c~~l~~~~~~~l------~~l~~L~~L~l~~~c~~l~~l~  315 (357)
                       +.++.|..|+++. +.+.++.....      ..+++|++|++..  +.+..++
T Consensus       267 ~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~--N~I~~w~  317 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISE--NNIRDWR  317 (505)
T ss_pred             cccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeeccc--Ccccccc
Confidence             4456666666666 33443222111      3456677776665  4554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.09  E-value=3.2e-06  Score=70.15  Aligned_cols=128  Identities=20%  Similarity=0.292  Sum_probs=43.8

Q ss_pred             CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcce
Q 037573          199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTI  276 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~  276 (357)
                      +..++++|+++++ .+..+..-...+.+|+.|++++| .++.+ +++..++.|+.|++++ +.++.+...  ..+++|++
T Consensus        17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l-~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNN-QITKL-EGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S---TT----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccc-ccccccchhhhhcCCCEEECCCC-CCccc-cCccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence            3456788898874 55555432212248999999884 47777 4677889999999988 677777532  23678999


Q ss_pred             EEecCCCCceeccc-ccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccccc
Q 037573          277 LKITDVNIFKSLFQ-WGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISS  340 (357)
Q Consensus       277 L~l~~c~~l~~~~~-~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~~  340 (357)
                      |++++ |.+.++.. ..+..+++|+.|++.+ +| +..-+       .-+...+..+|+|+.+++
T Consensus        93 L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~-NP-v~~~~-------~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSN-NKISDLNELEPLSSLPKLRVLSLEG-NP-VCEKK-------NYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TT-S---SCCCCGGGGG-TT--EEE-TT--G-GGGST-------THHHHHHHH-TT-SEETT
T ss_pred             EECcC-CcCCChHHhHHHHcCCCcceeeccC-Cc-ccchh-------hHHHHHHHHcChhheeCC
Confidence            99988 77764433 2457788999999988 43 22222       222234445666666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=4.3e-07  Score=79.49  Aligned_cols=176  Identities=14%  Similarity=0.173  Sum_probs=116.1

Q ss_pred             CcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCC--CCCC
Q 037573          148 SLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERG--LPST  225 (357)
Q Consensus       148 ~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~  225 (357)
                      .|++++++. ..++.-.-.    --|..+.+|+.|.+.+..--..+...+.+-.+|+.+++++|+.+++.....  -.++
T Consensus       186 Rlq~lDLS~-s~it~stl~----~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSN-SVITVSTLH----GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcch-hheeHHHHH----HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence            477777776 344321100    001117789999988865444555567777889999999998887765411  1234


Q ss_pred             CcceEEeccCCcchhhHh-hhccC-CcccceeeccCcCccccCCC------CCCCCcceEEecCCCCceecccccccccC
Q 037573          226 NLTAVCVINCEKLEALLN-GIHRL-TSHQQLTVEQCPGIVAIPEN------DYPTNLTILKITDVNIFKSLFQWGLHRLN  297 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L~l~~c~~l~~~~~~~l~~l~  297 (357)
                      .|..|+++.|...+.... .+.+. +.|..|+++||.+.  +...      .-+++|..||+++|..++.-....+..++
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~  338 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN  338 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--hhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence            888999988876543321 22222 57888999987432  2222      12789999999999888853333467889


Q ss_pred             CccEEEEeccCCCCCc--CCCCCCCCCCcceEecccC
Q 037573          298 SLKELIVNGEFPDMIS--FPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       298 ~L~~L~l~~~c~~l~~--l~~~~~~~~sL~~L~l~~c  332 (357)
                      -|++|.++. |-.+..  +- .+...|+|.||++.+|
T Consensus       339 ~L~~lSlsR-CY~i~p~~~~-~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  339 YLQHLSLSR-CYDIIPETLL-ELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hheeeehhh-hcCCChHHee-eeccCcceEEEEeccc
Confidence            999999999 976632  11 2235789999999986

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.05  E-value=3.5e-07  Score=86.42  Aligned_cols=125  Identities=26%  Similarity=0.397  Sum_probs=49.5

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      +..+..|.+|+++.+. +..+|..+-.|+ |+.|.+++ +++..+|..++.      .+.|..|+.+.| .+..+|..++
T Consensus       117 i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~------~~tl~~ld~s~n-ei~slpsql~  186 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGL------LPTLAHLDVSKN-EIQSLPSQLG  186 (722)
T ss_pred             hhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCCccccc------chhHHHhhhhhh-hhhhchHHhh
Confidence            3344444444444432 333444333333 44444443 344444444332      334444444432 2333444444


Q ss_pred             CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceee
Q 037573          199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTV  256 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l  256 (357)
                      .+.+|+.|++.. +.+..+|+.... -.|..|++ .|+++..+|-.+.+++.|++|-+
T Consensus       187 ~l~slr~l~vrR-n~l~~lp~El~~-LpLi~lDf-ScNkis~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  187 YLTSLRDLNVRR-NHLEDLPEELCS-LPLIRLDF-SCNKISYLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             hHHHHHHHHHhh-hhhhhCCHHHhC-Cceeeeec-ccCceeecchhhhhhhhheeeee
Confidence            444444444433 233333332111 12444444 22334444444444444444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.97  E-value=3.4e-06  Score=74.04  Aligned_cols=192  Identities=14%  Similarity=0.161  Sum_probs=119.8

Q ss_pred             CCCCcCEEeecCCCcchhccccccccc--cccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCccc----C
Q 037573          145 CLSSLTEITVAGCTKLVSFLELSSVAE--MFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSF----P  218 (357)
Q Consensus       145 ~l~~L~~L~i~~c~~l~~~~~~~~~L~--~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l----~  218 (357)
                      -+..|.+|..++-..-..-...+.++-  +|+.+.+|+.+.++.|.. +.+-.....-|-|+.+.+.+. .+...    |
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s-~~~~~~~l~p  257 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNT-TIQDVPSLLP  257 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeecCchhheeeeecc-cccccccccc
Confidence            356788888776322110000000000  233378999999998852 332211112355677766542 11111    1


Q ss_pred             C----------------------CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcce
Q 037573          219 E----------------------RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTI  276 (357)
Q Consensus       219 ~----------------------~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~  276 (357)
                      +                      ...  ..|+++++++ +.++.+-+++.-.|.++.|+++. +.+..+.....+++|+.
T Consensus       258 e~~~~D~~~~E~~t~~G~~~~~~dTW--q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L~~L~~  333 (490)
T KOG1259|consen  258 ETILADPSGSEPSTSNGSALVSADTW--QELTELDLSG-NLITQIDESVKLAPKLRRLILSQ-NRIRTVQNLAELPQLQL  333 (490)
T ss_pred             hhhhcCccCCCCCccCCceEEecchH--hhhhhccccc-cchhhhhhhhhhccceeEEeccc-cceeeehhhhhcccceE
Confidence            1                      011  3678888877 56788878888889999999988 56666655556789999


Q ss_pred             EEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc--------------Ccccccccccc
Q 037573          277 LKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD--------------FQNLEYISSTV  342 (357)
Q Consensus       277 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~--------------c~~L~~l~~~~  342 (357)
                      |++++ |.++.+.-|. ..+-+.++|.+.+  +.++.+.+.. .+-||.+|++++              .|+|+.+...+
T Consensus       334 LDLS~-N~Ls~~~Gwh-~KLGNIKtL~La~--N~iE~LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  334 LDLSG-NLLAECVGWH-LKLGNIKTLKLAQ--NKIETLSGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             eeccc-chhHhhhhhH-hhhcCEeeeehhh--hhHhhhhhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence            99998 7777666552 4678889999998  7888876544 577888887763              56666665555


Q ss_pred             ccccc
Q 037573          343 LDLHF  347 (357)
Q Consensus       343 ~~~~~  347 (357)
                      .++..
T Consensus       409 NPl~~  413 (490)
T KOG1259|consen  409 NPLAG  413 (490)
T ss_pred             CCccc
Confidence            55543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.96  E-value=1.5e-05  Score=54.08  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=27.3

Q ss_pred             cccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573          250 SHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       250 ~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      +|++|++++| .+..+|...+  +++|++|++++ +.++.+++..+..+++|++|++++
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcC
Confidence            4455555543 4444444322  44555555554 445555444455555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.80  E-value=4.1e-05  Score=51.86  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=49.5

Q ss_pred             CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEecccCc
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRDFQ  333 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~c~  333 (357)
                      ++|++|++++ +.++.++...+..+++|++|++++  +.+..++.. +..+++|++|++++++
T Consensus         1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~--N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSN--NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETS-STESEECTTTTTTGTTESEEEETS--SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccC--CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            5799999999 589999887789999999999997  788888654 4567888888887763

...

>PLN03150 hypothetical protein; Provisional

Probab=97.79  E-value=4.7e-05  Score=76.33  Aligned_cols=109  Identities=11%  Similarity=0.068  Sum_probs=53.9

Q ss_pred             cCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcc
Q 037573          149 LTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLT  228 (357)
Q Consensus       149 L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~  228 (357)
                      +..|+++++.--..+|..+..      +++|+.|+++++.....+|..++.+++|+.|+++++.-...+|.....+++|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~  493 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISK------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR  493 (623)
T ss_pred             EEEEECCCCCccccCCHHHhC------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence            445555553322344444334      55666666665543345555566666666666665433334444222223666


Q ss_pred             eEEeccCCcchhhHhhhccC-CcccceeeccCcCcc
Q 037573          229 AVCVINCEKLEALLNGIHRL-TSHQQLTVEQCPGIV  263 (357)
Q Consensus       229 ~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~~l~  263 (357)
                      .|+++++.....+|..+... .++..+++.+++.+.
T Consensus       494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             EEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence            66666554444555554432 344555555544333

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.63  E-value=7.5e-06  Score=79.43  Aligned_cols=209  Identities=20%  Similarity=0.293  Sum_probs=108.4

Q ss_pred             CCCcccEEeeccCcCccc--cccccCCCCCcCEEeecCC-CcchhccccccccccccccccccEEEeeCCCCCcccc-cc
Q 037573          121 VLCRLKYLELIDCECLVN--LPQALHCLSSLTEITVAGC-TKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP-HE  196 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~i~~c-~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~  196 (357)
                      .+++|+.+.+.+|..+..  +-.....+++|+.|++++| ......+...  ......+++|+.|++++|..+...- ..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL--LLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh--hhhhhhcCCcCccchhhhhccCchhHHH
Confidence            368888888888877776  3344667888999998873 3222222110  1112227788888888876543321 11


Q ss_pred             cC-CCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchh--hHhhhccCCcccceeecc---CcCccccC
Q 037573          197 LH-KLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEA--LLNGIHRLTSHQQLTVEQ---CPGIVAIP  266 (357)
Q Consensus       197 l~-~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~---c~~l~~l~  266 (357)
                      +. .+++|+.|.+.+|..++....    ..++  +|++|++++|..++.  +......+++|+.|.+..   |..++.+.
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~--~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~  341 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCP--SLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLS  341 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcC--cccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence            22 267888888887876543322    2334  788888888887643  333344466655554443   33344332


Q ss_pred             CCCC---C-CCcceEEecCCCCceecccccccccCCcc-EEEEeccCCCC-CcCCCCCCCCCCcceEecccCccc
Q 037573          267 ENDY---P-TNLTILKITDVNIFKSLFQWGLHRLNSLK-ELIVNGEFPDM-ISFPQEEIGSTSLTRLWIRDFQNL  335 (357)
Q Consensus       267 ~~~~---~-~~L~~L~l~~c~~l~~~~~~~l~~l~~L~-~L~l~~~c~~l-~~l~~~~~~~~sL~~L~l~~c~~L  335 (357)
                      -.+.   . ..+..+.+.+|..++........ ..... .+.+.+ |+.+ ..+..-.....+++.|.+..|...
T Consensus       342 l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~g-c~~l~~~l~~~~~~~~~l~~L~l~~~~~~  414 (482)
T KOG1947|consen  342 LSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRG-CPNLTESLELRLCRSDSLRVLNLSDCRLV  414 (482)
T ss_pred             HHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcC-CcccchHHHHHhccCCccceEecccCccc
Confidence            2111   1 14555555555555533222112 22222 344445 5555 222211112222555666555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.54  E-value=3.1e-05  Score=77.82  Aligned_cols=79  Identities=24%  Similarity=0.468  Sum_probs=37.3

Q ss_pred             CcccEEeeccCcCccc-cccccCC-CCCcCEEeecCCCcch--hccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          123 CRLKYLELIDCECLVN-LPQALHC-LSSLTEITVAGCTKLV--SFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~-lp~~~~~-l~~L~~L~i~~c~~l~--~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      .+|++|+++|...+.. +|..++. ||+|+.|.+.|- .+.  .+.....+      +|+|..|||+++ ++..+ .+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~s------FpNL~sLDIS~T-nI~nl-~GIS  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCAS------FPNLRSLDISGT-NISNL-SGIS  192 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhc------cCccceeecCCC-CccCc-HHHh
Confidence            4566666665443322 3333333 566666666551 111  11111112      556666666663 34444 4555


Q ss_pred             CCCCccEEEecC
Q 037573          199 KLSRLQQIEIRN  210 (357)
Q Consensus       199 ~l~~L~~L~l~~  210 (357)
                      ++++|+.|.+.+
T Consensus       193 ~LknLq~L~mrn  204 (699)
T KOG3665|consen  193 RLKNLQVLSMRN  204 (699)
T ss_pred             ccccHHHHhccC
Confidence            555555554443

>PLN03150 hypothetical protein; Provisional

Probab=97.53  E-value=0.00018  Score=72.26  Aligned_cols=103  Identities=16%  Similarity=0.145  Sum_probs=59.0

Q ss_pred             ccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc
Q 037573          179 FENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ  258 (357)
Q Consensus       179 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  258 (357)
                      ++.|+++++..-..+|..++.+++|+.|+++++.-...+|...-.+++|+.|+++++.....+|..+.++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56666666544445666777777777777776543334554222223777777776554456666677777777777766


Q ss_pred             CcCccccCCC--CCCCCcceEEecC
Q 037573          259 CPGIVAIPEN--DYPTNLTILKITD  281 (357)
Q Consensus       259 c~~l~~l~~~--~~~~~L~~L~l~~  281 (357)
                      +.....+|..  ....++..+++.+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             CcccccCChHHhhccccCceEEecC
Confidence            5433344432  1123444555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.31  E-value=5.1e-05  Score=72.45  Aligned_cols=169  Identities=18%  Similarity=0.237  Sum_probs=99.3

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      ++.+.+|..|++.+.. +..+...+..+++|++|++++ +.|..+.....       ++.|+.|++.++ .+..+ .++.
T Consensus        91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~-------l~~L~~L~l~~N-~i~~~-~~~~  159 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSF-NKITKLEGLST-------LTLLKELNLSGN-LISDI-SGLE  159 (414)
T ss_pred             cccccceeeeeccccc-hhhcccchhhhhcchheeccc-cccccccchhh-------ccchhhheeccC-cchhc-cCCc
Confidence            5667888889998754 666655477889999999987 56766654333       777888998884 45555 3455


Q ss_pred             CCCCccEEEecCCCCCcccCC---CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCC--
Q 037573          199 KLSRLQQIEIRNCPSLVSFPE---RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTN--  273 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~---~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~--  273 (357)
                      .+++|+.++++++ .+..+..   ..+.  +++.+++.++. +..+ .++..+..+..+++.+ +.+..+-.......  
T Consensus       160 ~l~~L~~l~l~~n-~i~~ie~~~~~~~~--~l~~l~l~~n~-i~~i-~~~~~~~~l~~~~l~~-n~i~~~~~l~~~~~~~  233 (414)
T KOG0531|consen  160 SLKSLKLLDLSYN-RIVDIENDELSELI--SLEELDLGGNS-IREI-EGLDLLKKLVLLSLLD-NKISKLEGLNELVMLH  233 (414)
T ss_pred             cchhhhcccCCcc-hhhhhhhhhhhhcc--chHHHhccCCc-hhcc-cchHHHHHHHHhhccc-ccceeccCcccchhHH
Confidence            5788888888874 4444544   4444  78888886643 3333 2233333333334433 23333322111222  


Q ss_pred             cceEEecCCCCceecccccccccCCccEEEEec
Q 037573          274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      |+.+++.+ +.+...+ .++..+..+..+++..
T Consensus       234 L~~l~l~~-n~i~~~~-~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  234 LRELYLSG-NRISRSP-EGLENLKNLPVLDLSS  264 (414)
T ss_pred             HHHHhccc-Ccccccc-ccccccccccccchhh
Confidence            66666666 4454332 2244555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.06  E-value=3.6e-05  Score=75.25  Aligned_cols=81  Identities=19%  Similarity=0.315  Sum_probs=57.1

Q ss_pred             CCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCC-CCCcceEEecCCCCceecccccccccCCccEEE
Q 037573          225 TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDY-PTNLTILKITDVNIFKSLFQWGLHRLNSLKELI  303 (357)
Q Consensus       225 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~  303 (357)
                      +.|+.|+++. +++..+ ..+..+++|++|+++. +.++.+|..+. -..|+.|++++ |.++.+.  ++.++.+|+.|+
T Consensus       187 ~ale~LnLsh-Nk~~~v-~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~--gie~LksL~~LD  260 (1096)
T KOG1859|consen  187 PALESLNLSH-NKFTKV-DNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTLR--GIENLKSLYGLD  260 (1096)
T ss_pred             HHhhhhccch-hhhhhh-HHHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhhh--hHHhhhhhhccc
Confidence            3778888877 345555 3778888888888877 56777765422 22488888888 7777664  567888888888


Q ss_pred             EeccCCCCCc
Q 037573          304 VNGEFPDMIS  313 (357)
Q Consensus       304 l~~~c~~l~~  313 (357)
                      +++  +-+..
T Consensus       261 lsy--Nll~~  268 (1096)
T KOG1859|consen  261 LSY--NLLSE  268 (1096)
T ss_pred             hhH--hhhhc
Confidence            887  44444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.05  E-value=6.9e-05  Score=73.32  Aligned_cols=100  Identities=18%  Similarity=0.273  Sum_probs=70.4

Q ss_pred             cccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCccccee
Q 037573          176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLT  255 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~  255 (357)
                      ++.|+.|+++.+ .+..+- .+..++.|++|++++ +.+..+|.-....-.|+.|.+++ +.++++ .++.++.+|+.|+
T Consensus       186 l~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTL-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhh-hhHHhhhhhhccc
Confidence            788999999885 455543 677889999999997 57777776222222589999977 557777 5788899999999


Q ss_pred             eccCcCccccCCC---CCCCCcceEEecC
Q 037573          256 VEQCPGIVAIPEN---DYPTNLTILKITD  281 (357)
Q Consensus       256 l~~c~~l~~l~~~---~~~~~L~~L~l~~  281 (357)
                      +++ +-+....+.   ..+..|+.|++.|
T Consensus       261 lsy-Nll~~hseL~pLwsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  261 LSY-NLLSEHSELEPLWSLSSLIVLWLEG  288 (1096)
T ss_pred             hhH-hhhhcchhhhHHHHHHHHHHHhhcC
Confidence            987 344444332   2245677777777

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.93  E-value=0.0012  Score=41.28  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=28.5

Q ss_pred             CCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccC
Q 037573          225 TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIP  266 (357)
Q Consensus       225 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~  266 (357)
                      ++|++|+++++ .++.+|..+.++++|+.|+++++ .++.++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            37888888774 57788777888888888888885 565554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.88  E-value=0.00023  Score=68.05  Aligned_cols=189  Identities=21%  Similarity=0.267  Sum_probs=115.4

Q ss_pred             CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573          122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS  201 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~  201 (357)
                      +..++.+.+.... ++..-..+..+.+|..+++.+ ..+..+......      +++|+.|++++ +.+..+ .++..++
T Consensus        71 l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~------~~~L~~L~ls~-N~I~~i-~~l~~l~  140 (414)
T KOG0531|consen   71 LTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYD-NKIEKIENLLSS------LVNLQVLDLSF-NKITKL-EGLSTLT  140 (414)
T ss_pred             hHhHHhhccchhh-hhhhhcccccccceeeeeccc-cchhhcccchhh------hhcchheeccc-cccccc-cchhhcc
Confidence            3444445544432 333333467788999999987 667766652223      88999999998 456666 3577788


Q ss_pred             CccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCCCCCCCcceEEe
Q 037573          202 RLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKI  279 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l  279 (357)
                      .|+.|++.+ ..+..+.. ..++  +|+.+++.++. +..+... ...+.+++.+.+.+ +.+..+........+..+++
T Consensus       141 ~L~~L~l~~-N~i~~~~~~~~l~--~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~~~~~~~l~~~~l  215 (414)
T KOG0531|consen  141 LLKELNLSG-NLISDISGLESLK--SLKLLDLSYNR-IVDIENDELSELISLEELDLGG-NSIREIEGLDLLKKLVLLSL  215 (414)
T ss_pred             chhhheecc-CcchhccCCccch--hhhcccCCcch-hhhhhhhhhhhccchHHHhccC-CchhcccchHHHHHHHHhhc
Confidence            899999997 46666654 2244  88889887744 4555322 57788899999987 45555543333344444555


Q ss_pred             cCCCCceecccccccccCC--ccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573          280 TDVNIFKSLFQWGLHRLNS--LKELIVNGEFPDMISFPQEEIGSTSLTRLWIR  330 (357)
Q Consensus       280 ~~c~~l~~~~~~~l~~l~~--L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~  330 (357)
                      .+ +.++.+.  ++..+..  |+.+++.+  +.+..++......+.+..|++.
T Consensus       216 ~~-n~i~~~~--~l~~~~~~~L~~l~l~~--n~i~~~~~~~~~~~~l~~l~~~  263 (414)
T KOG0531|consen  216 LD-NKISKLE--GLNELVMLHLRELYLSG--NRISRSPEGLENLKNLPVLDLS  263 (414)
T ss_pred             cc-ccceecc--CcccchhHHHHHHhccc--Cccccccccccccccccccchh
Confidence            55 5555332  2334443  78888887  5665553322233444444433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.87  E-value=0.0015  Score=40.90  Aligned_cols=39  Identities=21%  Similarity=0.429  Sum_probs=23.6

Q ss_pred             ccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCccc
Q 037573          177 TSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSF  217 (357)
Q Consensus       177 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l  217 (357)
                      ++|++|+++++ .+..+|..++++++|+.|+++++ .++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            35677777764 46666666777777777777764 34443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.85  E-value=0.0011  Score=66.93  Aligned_cols=129  Identities=16%  Similarity=0.208  Sum_probs=83.5

Q ss_pred             CCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc--cccc
Q 037573          121 VLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL--PHEL  197 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l--p~~l  197 (357)
                      .||.|+.|.+.+-..... +.....++|+|..|||++ +++..+ .++.+      +++|+.|.+.+.. ++.-  -..+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~------LknLq~L~mrnLe-~e~~~~l~~L  216 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISR------LKNLQVLSMRNLE-FESYQDLIDL  216 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhc------cccHHHHhccCCC-CCchhhHHHH
Confidence            489999999998654333 444466899999999999 467666 34445      8888888887643 2221  1346


Q ss_pred             CCCCCccEEEecCCCCCccc-------CC-CCCCCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCc
Q 037573          198 HKLSRLQQIEIRNCPSLVSF-------PE-RGLPSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCP  260 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l-------~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~  260 (357)
                      .++++|+.|++|.......-       .. ..+|  +|+.|+.++...-..+.+ .+..-++|+.+..-+|.
T Consensus       217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp--eLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~  286 (699)
T KOG3665|consen  217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP--ELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCL  286 (699)
T ss_pred             hcccCCCeeeccccccccchHHHHHHHHhcccCc--cccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence            77999999999975433221       00 2345  999999887443223322 23455677777665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.79  E-value=9.6e-05  Score=71.70  Aligned_cols=109  Identities=22%  Similarity=0.456  Sum_probs=60.4

Q ss_pred             CCCcCEEeecCCCcchh--ccccccccccccccccccEEEeeCC-CCCcccc----cccCCCCCccEEEecCCCCCcccC
Q 037573          146 LSSLTEITVAGCTKLVS--FLELSSVAEMFAIITSFENIMVNGC-DNLKCLP----HELHKLSRLQQIEIRNCPSLVSFP  218 (357)
Q Consensus       146 l~~L~~L~i~~c~~l~~--~~~~~~~L~~L~~l~~L~~L~l~~c-~~l~~lp----~~l~~l~~L~~L~l~~c~~l~~l~  218 (357)
                      +++|+.+.+.+|..+..  +-.....      +++|+.|++++| ......+    .....+++|+.++++.|..+....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALK------CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhh------CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence            57777777777766554  2122223      677777777763 2222111    122235667777777765544332


Q ss_pred             C----CCCCCCCcceEEeccCCcch--hhHhhhccCCcccceeeccCcCc
Q 037573          219 E----RGLPSTNLTAVCVINCEKLE--ALLNGIHRLTSHQQLTVEQCPGI  262 (357)
Q Consensus       219 ~----~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l  262 (357)
                      .    ..++  +|++|.+.+|..++  .+......+++|++|++++|..+
T Consensus       261 l~~l~~~c~--~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  261 LSALASRCP--NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHHHHhhCC--CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            2    1233  77777776676543  23334456677777777777665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.48  E-value=0.00054  Score=61.67  Aligned_cols=181  Identities=15%  Similarity=0.165  Sum_probs=111.2

Q ss_pred             ccCCCcccEEeeccCcCccc----cccccCCCCCcCEEeecCCCcchhccccc-c-cccc------ccccccccEEEeeC
Q 037573          119 IQVLCRLKYLELIDCECLVN----LPQALHCLSSLTEITVAGCTKLVSFLELS-S-VAEM------FAIITSFENIMVNG  186 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~i~~c~~l~~~~~~~-~-~L~~------L~~l~~L~~L~l~~  186 (357)
                      +...++|++++|+++..-..    +-.-+.++..|++|.+.+|- +....... + .|.+      ..-.++|+.+...+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            44567999999998764333    22346678999999999873 33211111 0 1111      11167899999887


Q ss_pred             CCCCccc-----ccccCCCCCccEEEecCCCCCcc--c---CCCCCCCCCcceEEeccCCcch----hhHhhhccCCccc
Q 037573          187 CDNLKCL-----PHELHKLSRLQQIEIRNCPSLVS--F---PERGLPSTNLTAVCVINCEKLE----ALLNGIHRLTSHQ  252 (357)
Q Consensus       187 c~~l~~l-----p~~l~~l~~L~~L~l~~c~~l~~--l---~~~~~~~~~L~~L~l~~c~~l~----~l~~~~~~l~~L~  252 (357)
                      + +++.-     -..+...+.|+.+.++.. .+..  +   ......+++|+.|++.++..-.    .+...+..+++|+
T Consensus       167 N-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  167 N-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR  244 (382)
T ss_pred             c-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence            4 45433     334555678888887753 2211  1   0112234599999999865321    2344567788999


Q ss_pred             ceeeccCcCccc---------cCCCCCCCCcceEEecCCCCcee----cccccccccCCccEEEEec
Q 037573          253 QLTVEQCPGIVA---------IPENDYPTNLTILKITDVNIFKS----LFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       253 ~L~l~~c~~l~~---------l~~~~~~~~L~~L~l~~c~~l~~----~~~~~l~~l~~L~~L~l~~  306 (357)
                      .|++++|. ++.         +.. + .|+|+.+.+.+ +.++.    .....+...+.|+.|+|++
T Consensus       245 El~l~dcl-l~~~Ga~a~~~al~~-~-~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  245 ELNLGDCL-LENEGAIAFVDALKE-S-APSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             eecccccc-cccccHHHHHHHHhc-c-CCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence            99999984 321         111 2 57899999999 55661    1112245578899999998

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.12  E-value=0.00079  Score=60.60  Aligned_cols=208  Identities=16%  Similarity=0.156  Sum_probs=118.2

Q ss_pred             ccCCCcccEEeeccCcCccc----cccccCCCCCcCEEeecCCCc---chhcccccc-ccccccccccccEEEeeCCCCC
Q 037573          119 IQVLCRLKYLELIDCECLVN----LPQALHCLSSLTEITVAGCTK---LVSFLELSS-VAEMFAIITSFENIMVNGCDNL  190 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~i~~c~~---l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l  190 (357)
                      ...+..++.+++++++.-..    +...+.+.++|+..++++..-   ...+|.... -.+-|-.+++|+.|+++.+-.-
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34567888999999875443    344566778888888876311   122333211 0001111679999999986432


Q ss_pred             cccc----cccCCCCCccEEEecCCCCCcccCC---------------CCCCCCCcceEEeccCCcch-----hhHhhhc
Q 037573          191 KCLP----HELHKLSRLQQIEIRNCPSLVSFPE---------------RGLPSTNLTAVCVINCEKLE-----ALLNGIH  246 (357)
Q Consensus       191 ~~lp----~~l~~l~~L~~L~l~~c~~l~~l~~---------------~~~~~~~L~~L~l~~c~~l~-----~l~~~~~  246 (357)
                      ..-+    .-+.+..+|++|++.+|- +.....               ...+ +.|+.+.... +.+.     .+-..++
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~-~~Lrv~i~~r-Nrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASK-PKLRVFICGR-NRLENGGATALAEAFQ  182 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCC-cceEEEEeec-cccccccHHHHHHHHH
Confidence            2222    234567889999998873 221110               0111 4788887754 4343     3344567


Q ss_pred             cCCcccceeeccCcCccc-----cCCC-CCCCCcceEEecCCCCceec----ccccccccCCccEEEEeccCCCCCc---
Q 037573          247 RLTSHQQLTVEQCPGIVA-----IPEN-DYPTNLTILKITDVNIFKSL----FQWGLHRLNSLKELIVNGEFPDMIS---  313 (357)
Q Consensus       247 ~l~~L~~L~l~~c~~l~~-----l~~~-~~~~~L~~L~l~~c~~l~~~----~~~~l~~l~~L~~L~l~~~c~~l~~---  313 (357)
                      ..+.|+.+.+.. +.+..     +... ..+++|+.|++.+ |.++.-    ....+..+++|+.|++.+ |.--..   
T Consensus       183 ~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~d-cll~~~Ga~  259 (382)
T KOG1909|consen  183 SHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGD-CLLENEGAI  259 (382)
T ss_pred             hccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccc-cccccccHH
Confidence            778888888876 23321     1111 2378999999998 666621    112356677899999998 842211   


Q ss_pred             -CCCCC-CCCCCcceEecccC
Q 037573          314 -FPQEE-IGSTSLTRLWIRDF  332 (357)
Q Consensus       314 -l~~~~-~~~~sL~~L~l~~c  332 (357)
                       +...+ ...|+|+.|.+.++
T Consensus       260 a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  260 AFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHHHHHhccCCCCceeccCcc
Confidence             10000 13567777766554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.16  E-value=0.0056  Score=51.23  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=54.5

Q ss_pred             CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC---CCCCCcceEEecCCCCceecccccccccCCccEE
Q 037573          226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN---DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKEL  302 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L  302 (357)
                      .++.++-+++.-...--..++.+++++.|.+.+|..+.++--+   +..++|+.|++++|..+++.--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4666666554322211234566777888888888777654221   3467899999999988885544446677888888


Q ss_pred             EEeccCCC
Q 037573          303 IVNGEFPD  310 (357)
Q Consensus       303 ~l~~~c~~  310 (357)
                      .+.+ .+.
T Consensus       182 ~l~~-l~~  188 (221)
T KOG3864|consen  182 HLYD-LPY  188 (221)
T ss_pred             HhcC-chh
Confidence            8776 443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.99  E-value=0.032  Score=49.64  Aligned_cols=11  Identities=0%  Similarity=0.235  Sum_probs=7.1

Q ss_pred             cccccEEEeeC
Q 037573          176 ITSFENIMVNG  186 (357)
Q Consensus       176 l~~L~~L~l~~  186 (357)
                      +|.|+.|+++.
T Consensus        96 lP~l~~LNls~  106 (418)
T KOG2982|consen   96 LPALTTLNLSC  106 (418)
T ss_pred             CccceEeeccC
Confidence            66666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.87  E-value=0.036  Score=46.50  Aligned_cols=83  Identities=20%  Similarity=0.238  Sum_probs=54.1

Q ss_pred             CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceeccc-ccccccCCccEE
Q 037573          226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQ-WGLHRLNSLKEL  302 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~-~~l~~l~~L~~L  302 (357)
                      +...++++++ .+..+ ..+.+++.|..|.+.+ +.++.+...  .+.++|++|.+.+ |++..+.+ ..+..+|.|++|
T Consensus        43 ~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceeccccc-chhhc-ccCCCccccceEEecC-CcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCcccee
Confidence            5666777763 34444 3556778888888876 677777554  3467888888888 66653322 135677888888


Q ss_pred             EEeccCCCCCcC
Q 037573          303 IVNGEFPDMISF  314 (357)
Q Consensus       303 ~l~~~c~~l~~l  314 (357)
                      .+-+  +.++..
T Consensus       119 tll~--Npv~~k  128 (233)
T KOG1644|consen  119 TLLG--NPVEHK  128 (233)
T ss_pred             eecC--Cchhcc
Confidence            8877  444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.67  E-value=0.085  Score=44.35  Aligned_cols=100  Identities=17%  Similarity=0.253  Sum_probs=63.7

Q ss_pred             CCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhcc-CCcccceeeccCcCccccCCC---CCCCCcc
Q 037573          201 SRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHR-LTSHQQLTVEQCPGIVAIPEN---DYPTNLT  275 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~-l~~L~~L~l~~c~~l~~l~~~---~~~~~L~  275 (357)
                      -....+++++. .+..++. ..++  .|.+|.+.+ +.++.+-+.+.. +++|+.|.+.+ +++..+.+.   ..++.|+
T Consensus        42 d~~d~iDLtdN-dl~~l~~lp~l~--rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLDNLPHLP--RLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             cccceeccccc-chhhcccCCCcc--ccceEEecC-CcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccc
Confidence            34566777763 4444432 2233  889998855 667777555544 57799999988 566655433   3367999


Q ss_pred             eEEecCCCCceeccc---ccccccCCccEEEEec
Q 037573          276 ILKITDVNIFKSLFQ---WGLHRLNSLKELIVNG  306 (357)
Q Consensus       276 ~L~l~~c~~l~~~~~---~~l~~l~~L~~L~l~~  306 (357)
                      +|.+-+ +.++.-..   ..+..+|+|+.|++..
T Consensus       117 ~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  117 YLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeeecC-CchhcccCceeEEEEecCcceEeehhh
Confidence            999988 55552211   1245678888888776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.66  E-value=0.034  Score=49.49  Aligned_cols=196  Identities=16%  Similarity=0.166  Sum_probs=108.4

Q ss_pred             CCcccEEeeccCcCcccc---ccccCCCCCcCEEeecCCCcch----hccccccccccccccccccEEEeeCCC-CCccc
Q 037573          122 LCRLKYLELIDCECLVNL---PQALHCLSSLTEITVAGCTKLV----SFLELSSVAEMFAIITSFENIMVNGCD-NLKCL  193 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~i~~c~~l~----~~~~~~~~L~~L~~l~~L~~L~l~~c~-~l~~l  193 (357)
                      .+.++.+++.++. +..+   ..-+.++|.|+.|+++. +.+.    +.|.   .      ..+|+.|.+.+.. .....
T Consensus        70 ~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp~---p------~~nl~~lVLNgT~L~w~~~  138 (418)
T KOG2982|consen   70 VTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLPL---P------LKNLRVLVLNGTGLSWTQS  138 (418)
T ss_pred             hhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccC-CcCCCccccCcc---c------ccceEEEEEcCCCCChhhh
Confidence            4677778887754 3333   33456788899998874 4443    2331   1      5688888887743 12233


Q ss_pred             ccccCCCCCccEEEecCCCCCcccCC------CCCCCCCcceEEeccCCcchhh--HhhhccCCcccceeeccCcCcccc
Q 037573          194 PHELHKLSRLQQIEIRNCPSLVSFPE------RGLPSTNLTAVCVINCEKLEAL--LNGIHRLTSHQQLTVEQCPGIVAI  265 (357)
Q Consensus       194 p~~l~~l~~L~~L~l~~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l  265 (357)
                      -..+..+|.++.|.++.. ++..+-.      ..-  +.++++.+.+|......  -.-.+-+|++..+.+..|+ ++..
T Consensus       139 ~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s--~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~  214 (418)
T KOG2982|consen  139 TSSLDDLPKVTELHMSDN-SLRQLNLDDNCIEDWS--TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTE  214 (418)
T ss_pred             hhhhhcchhhhhhhhccc-hhhhhccccccccccc--hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccch
Confidence            334455666666666542 2211111      111  25666777676543221  1112447888888887775 3222


Q ss_pred             CC-CC--CCCCcceEEecCCCCceec-ccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573          266 PE-ND--YPTNLTILKITDVNIFKSL-FQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       266 ~~-~~--~~~~L~~L~l~~c~~l~~~-~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      .. .+  ..+.+..|+++. +++.+. ....+..+++|..|.+.+ .|-.+.+-.+..     .+|-|.-.++++.+.
T Consensus       215 s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~-~Pl~d~l~~~er-----r~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  215 SSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSE-NPLSDPLRGGER-----RFLLIARLTKVQVLN  285 (418)
T ss_pred             hhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccC-CcccccccCCcc-----eEEEEeeccceEEec
Confidence            21 12  245666777776 555522 223467788999999988 777766654331     233444455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.17  E-value=0.0031  Score=55.33  Aligned_cols=76  Identities=20%  Similarity=0.248  Sum_probs=32.8

Q ss_pred             cceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccc-cccccCCccEEEEe
Q 037573          227 LTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQW-GLHRLNSLKELIVN  305 (357)
Q Consensus       227 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~-~l~~l~~L~~L~l~  305 (357)
                      .+.|+.+||. +..+ .-..+++.|+.|.++- +++..+....-+.+|+.|.|+. |.+.++.+. =+.++++|++|.|.
T Consensus        21 vkKLNcwg~~-L~DI-sic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   21 VKKLNCWGCG-LDDI-SICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             hhhhcccCCC-ccHH-HHHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhc
Confidence            3444444443 3333 1233444555555543 3344333322344555555554 444433221 13455555555555


Q ss_pred             c
Q 037573          306 G  306 (357)
Q Consensus       306 ~  306 (357)
                      .
T Consensus        97 E   97 (388)
T KOG2123|consen   97 E   97 (388)
T ss_pred             c
Confidence            4

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.03  E-value=0.31  Score=37.76  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=11.1

Q ss_pred             CCCcceEEecCCCCceecccccccccCCccEEEEe
Q 037573          271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVN  305 (357)
Q Consensus       271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~  305 (357)
                      +++|+.+.+..  ++..+....+... +|+.+.+.
T Consensus        80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             -TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence            34555555533  2333333334443 45544443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=0.01  Score=49.63  Aligned_cols=39  Identities=13%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             CCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCcc
Q 037573          225 TNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIV  263 (357)
Q Consensus       225 ~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~  263 (357)
                      ++|+.|++++|+.+++-. ..+.++++|+.|.+.+.+.+.
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence            377777777777776432 356667777777777655443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=93.88  E-value=0.0033  Score=49.40  Aligned_cols=100  Identities=19%  Similarity=0.311  Sum_probs=60.4

Q ss_pred             ccEEeeccCcCcccccc---ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCcccccccCCC
Q 037573          125 LKYLELIDCECLVNLPQ---ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLPHELHKL  200 (357)
Q Consensus       125 L~~L~l~~~~~l~~lp~---~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l  200 (357)
                      +-.++++.|. +.++++   .+.....|...++++ +.+..+|+.+. .      ++-++.|++.+ +.+..+|.++..+
T Consensus        29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~k------f~t~t~lNl~~-neisdvPeE~Aam   99 (177)
T KOG4579|consen   29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIK------FPTATTLNLAN-NEISDVPEELAAM   99 (177)
T ss_pred             hhhcccccch-hhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhc------cchhhhhhcch-hhhhhchHHHhhh
Confidence            3345677775 344444   344455666677877 56777776544 3      45677788877 4577788888788


Q ss_pred             CCccEEEecCCCCCcccCCCCCCCCCcceEEecc
Q 037573          201 SRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVIN  234 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~  234 (357)
                      +.|+.|+++.. .+...|.-..|..++-.|+.-+
T Consensus       100 ~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  100 PALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             HHhhhcccccC-ccccchHHHHHHHhHHHhcCCC
Confidence            88888888763 3444444333333444554433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=93.40  E-value=0.0053  Score=48.28  Aligned_cols=86  Identities=14%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             CcceEEeccCCcchhhHhhhc-cCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEE
Q 037573          226 NLTAVCVINCEKLEALLNGIH-RLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI  303 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~  303 (357)
                      .|...++++ +.+..+|..+. .++-+..|++.+ +.+.++|.+ ...+.|+.|+++. |.+...+.. +..+.+|-.|+
T Consensus        54 el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~v-i~~L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF-NPLNAEPRV-IAPLIKLDMLD  129 (177)
T ss_pred             eEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc-CccccchHH-HHHHHhHHHhc
Confidence            445555555 33455554332 344556666655 455556555 2255666666665 444433332 23355555555


Q ss_pred             EeccCCCCCcCCCC
Q 037573          304 VNGEFPDMISFPQE  317 (357)
Q Consensus       304 l~~~c~~l~~l~~~  317 (357)
                      ..+  +.+..+|..
T Consensus       130 s~~--na~~eid~d  141 (177)
T KOG4579|consen  130 SPE--NARAEIDVD  141 (177)
T ss_pred             CCC--CccccCcHH
Confidence            554  555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.36  E-value=0.55  Score=36.35  Aligned_cols=100  Identities=18%  Similarity=0.283  Sum_probs=40.3

Q ss_pred             ccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCcccccc
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp~~  196 (357)
                      +..+.+|+.+.+..  .+..++. .+..+++|+.+.+.+  .+..++...+ .      +++++.+.+.+  .+..++..
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~------~~~l~~i~~~~--~~~~i~~~   75 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSN------CKSLESITFPN--NLKSIGDN   75 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-------TT-EEEEETS--TT-EE-TT
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeec------ccccccccccc--cccccccc
Confidence            44555666666653  2445443 355565677776654  2555554333 2      44566666643  33444332


Q ss_pred             -cCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEe
Q 037573          197 -LHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCV  232 (357)
Q Consensus       197 -l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l  232 (357)
                       +...++|+.+.+..  .+..++...+.-.+|+.+.+
T Consensus        76 ~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~  110 (129)
T PF13306_consen   76 AFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINI  110 (129)
T ss_dssp             TTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-
T ss_pred             cccccccccccccCc--cccEEchhhhcCCCceEEEE
Confidence             33356666666643  24444443333224555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.91  E-value=0.053  Score=28.15  Aligned_cols=17  Identities=29%  Similarity=0.587  Sum_probs=7.7

Q ss_pred             ccEEEeeCCCCCcccccc
Q 037573          179 FENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       179 L~~L~l~~c~~l~~lp~~  196 (357)
                      |++|++++| .+..+|.+
T Consensus         2 L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             ESEEEETSS-EESEEGTT
T ss_pred             ccEEECCCC-cCEeCChh
Confidence            444555544 33444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.88  E-value=0.0051  Score=54.01  Aligned_cols=83  Identities=17%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc--cccCC
Q 037573          122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP--HELHK  199 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp--~~l~~  199 (357)
                      +.+.+.|+.-||. +..+.- ...++.|+.|.++- +++.++.+       +..+++|+.|.+..+ .+..+-  ..+.+
T Consensus        18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSv-NkIssL~p-------l~rCtrLkElYLRkN-~I~sldEL~YLkn   86 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSV-NKISSLAP-------LQRCTRLKELYLRKN-CIESLDELEYLKN   86 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeec-cccccchh-------HHHHHHHHHHHHHhc-ccccHHHHHHHhc
Confidence            4455566666664 444433 44566666666653 34443322       111666666666552 233331  22445


Q ss_pred             CCCccEEEecCCCCCc
Q 037573          200 LSRLQQIEIRNCPSLV  215 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~  215 (357)
                      +|+|+.|++...+...
T Consensus        87 lpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCG  102 (388)
T ss_pred             CchhhhHhhccCCccc
Confidence            5666666665544443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.63  E-value=0.065  Score=27.82  Aligned_cols=17  Identities=12%  Similarity=0.130  Sum_probs=8.1

Q ss_pred             cceEEeccCCcchhhHhh
Q 037573          227 LTAVCVINCEKLEALLNG  244 (357)
Q Consensus       227 L~~L~l~~c~~l~~l~~~  244 (357)
                      |++|++++| .++.+|.+
T Consensus         2 L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             ESEEEETSS-EESEEGTT
T ss_pred             ccEEECCCC-cCEeCChh
Confidence            455555554 34444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.17  E-value=0.16  Score=44.34  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             cccCCCcccEEeeccC--cCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc
Q 037573          118 VIQVLCRLKYLELIDC--ECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH  195 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~--~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~  195 (357)
                      .+..+++|+.|.++++  +....++.-+..+|+|+++++++ +++.. +.   .++-+..+.+|..|++.+|.... +-.
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~-ls---tl~pl~~l~nL~~Ldl~n~~~~~-l~d  133 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKD-LS---TLRPLKELENLKSLDLFNCSVTN-LDD  133 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Ccccc-cc---ccchhhhhcchhhhhcccCCccc-ccc
Confidence            3556778888888876  44444544455668888888877 34432 11   12223336677777777765322 210


Q ss_pred             ----ccCCCCCccEEEecCC
Q 037573          196 ----ELHKLSRLQQIEIRNC  211 (357)
Q Consensus       196 ----~l~~l~~L~~L~l~~c  211 (357)
                          .+.-+++|++|+-.++
T Consensus       134 yre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  134 YREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             HHHHHHHHhhhhcccccccc
Confidence                1222566666654443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.66  E-value=0.28  Score=42.89  Aligned_cols=82  Identities=13%  Similarity=0.149  Sum_probs=37.1

Q ss_pred             cccccEEEeeCC--CCCcccccccCCCCCccEEEecCCCCCcc---cCC-CCCCCCCcceEEeccCCcch--hhH-hhhc
Q 037573          176 ITSFENIMVNGC--DNLKCLPHELHKLSRLQQIEIRNCPSLVS---FPE-RGLPSTNLTAVCVINCEKLE--ALL-NGIH  246 (357)
Q Consensus       176 l~~L~~L~l~~c--~~l~~lp~~l~~l~~L~~L~l~~c~~l~~---l~~-~~~~~~~L~~L~l~~c~~l~--~l~-~~~~  246 (357)
                      +++|+.|.++.+  .-...++.....+|+|+++++++. .+..   ++. ..+.  +|..|++.+|....  .-- ..+.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~--nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELE--NLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhc--chhhhhcccCCccccccHHHHHHH
Confidence            555566655544  222223333334466666666552 2221   111 2222  55566665554322  110 1234


Q ss_pred             cCCcccceeeccCc
Q 037573          247 RLTSHQQLTVEQCP  260 (357)
Q Consensus       247 ~l~~L~~L~l~~c~  260 (357)
                      -+++|++|+-.++.
T Consensus       141 ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  141 LLPSLKYLDGCDVD  154 (260)
T ss_pred             HhhhhccccccccC
Confidence            45677777666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.37  E-value=0.19  Score=24.26  Aligned_cols=8  Identities=0%  Similarity=0.243  Sum_probs=2.7

Q ss_pred             ccEEEeeC
Q 037573          179 FENIMVNG  186 (357)
Q Consensus       179 L~~L~l~~  186 (357)
                      |+.|++++
T Consensus         3 L~~L~l~~   10 (17)
T PF13504_consen    3 LRTLDLSN   10 (17)
T ss_dssp             -SEEEETS
T ss_pred             cCEEECCC
Confidence            33333333

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.54  E-value=0.23  Score=43.85  Aligned_cols=92  Identities=9%  Similarity=0.096  Sum_probs=52.5

Q ss_pred             cCCCcccEEeeccCcCccc----cccccCCCCCcCEEeecCCCc---chhcccccc-ccccccccccccEEEeeCCCCCc
Q 037573          120 QVLCRLKYLELIDCECLVN----LPQALHCLSSLTEITVAGCTK---LVSFLELSS-VAEMFAIITSFENIMVNGCDNLK  191 (357)
Q Consensus       120 ~~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~i~~c~~---l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~  191 (357)
                      ..+..+..++++|++.-+.    +...+.+-.+|+..++++..-   -..++.... -++-|-.+|.|+..+++.+..-.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3467788889998875444    444566667777777765210   012222111 11122227888888888755434


Q ss_pred             ccccc----cCCCCCccEEEecCC
Q 037573          192 CLPHE----LHKLSRLQQIEIRNC  211 (357)
Q Consensus       192 ~lp~~----l~~l~~L~~L~l~~c  211 (357)
                      ..|+.    +++-+.|++|.+++|
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecC
Confidence            44433    445677888877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	357
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		8e-06

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 114 STTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMF 173
           S  + I  L  LK L++ +   L  L  A+H L  L E+ + GCT L ++        +F
Sbjct: 197 SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNY------PPIF 249
Query: 174 AIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVI 233
                 + +++  C NL  LP ++H+L++L+++++R C +L   P        L A C+I
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL---IAQLPANCII 306

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 8e-10
 Identities = 58/427 (13%), Positives = 122/427 (28%), Gaps = 121/427 (28%)

Query: 11  DIWLGELQNLAYHLKDIL-----------DELDTEALQRKLLFKPD------QPST-SKA 52
           D   GE Q   Y  KDIL           D  D + + + +L K +           S  
Sbjct: 8   DFETGEHQ---YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 53  WKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSK--KVG 110
            +L                   +R   K   + ++    +   ++ +    +R +     
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYNDN 123

Query: 111 QRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITV---AGCTK--LVSFLE 165
           Q  +  +V     RL        +  + L QAL  L     + +    G  K  +     
Sbjct: 124 QVFAKYNV----SRL--------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---- 167

Query: 166 LSSVAEMFAIITSFEN----IMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERG 221
              V   + +    +     + +  C++    P  +  L  LQ++  +  P+  S  +  
Sbjct: 168 -LDVCLSYKVQCKMDFKIFWLNLKNCNS----PETV--LEMLQKLLYQIDPNWTSRSDH- 219

Query: 222 LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQ-L----------TVE----QCP------ 260
             S+N+     +    ++A L  + +   ++  L                  C       
Sbjct: 220 --SSNIK----LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 261 --GIVAIPENDYPTNLTILKITDVNIF-----KSLF-QWGLHRLNSLKELIVNG------ 306
              +         T++++   +          KSL  ++   R   L   ++        
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 307 -------EFPDMISF-------PQEEIGSTSLTRLWIRDFQNLEYISSTVL--DLHFCNY 350
                  +                  I  +SL  L   +++ + +   +V     H    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAH---- 386

Query: 351 IPRDVLC 357
           IP  +L 
Sbjct: 387 IPTILLS 393

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 72/396 (18%), Positives = 123/396 (31%), Gaps = 102/396 (25%)

Query: 9   SDDIWLGELQNLAYHLKDILDE---------LDTEALQ---RKLLFKPDQPSTSKAWKLI 56
           S +  L  LQ L Y +               L   ++Q   R+LL      +      L+
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LL 248

Query: 57  IRTCCSNFNTPSL--MFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLS 114
           +     N         FN S +  L   TTR +++    + L   + +          L+
Sbjct: 249 V---LLNVQNAKAWNAFNLSCKILL---TTRFKQV---TDFLSAATTTHISLDHHSMTLT 299

Query: 115 TTSVIQVLCRLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSFLELSSVAEMF 173
              V  +L  LKYL+    +    LP +                    +   LS +AE  
Sbjct: 300 PDEVKSLL--LKYLD-CRPQD---LPREV----------------LTTNPRRLSIIAESI 337

Query: 174 AI-ITSFENIMVNGCDNLKCLPHELHKLS--RLQQIEIRNC-PSLVSFPERGLPSTNLTA 229
              + +++N     CD L      + + S   L+  E R     L  FP     S ++  
Sbjct: 338 RDGLATWDNWKHVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFPP----SAHIPT 389

Query: 230 VCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLF 289
                   L  +   +  + S   + V +      + +    + ++I  I      K   
Sbjct: 390 ------ILLSLIWFDV--IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 290 QWGLHRL-----NSLKELIVNGEFP---DMISF--------PQEEIGSTSLTRLWIRDFQ 333
           ++ LHR      N  K    +   P   D   +          E     +L R+   DF+
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 334 NLE--------------YISSTVLDLHF-CNYIPRD 354
            LE               I +T+  L F   YI  +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 41/208 (19%), Positives = 79/208 (37%), Gaps = 33/208 (15%)

Query: 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSF---LELSSVAEMFAI 175
           +Q    L+ L L     L  LP ++  L+ L E+++  C +L      L  +  +     
Sbjct: 123 MQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 176 ITSFENIMVNGCD----------------------NLKCLPHELHKLSRLQQIEIRNCPS 213
           + + +++ +                           L  L   +H L +L+++++R C +
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241

Query: 214 LVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTN 273
           L ++P        L  + + +C  L  L   IHRLT  ++L +  C  +  +P       
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL--IAQ 299

Query: 274 LTILKITDV--NIFKSLFQWGLHRLNSL 299
           L    I  V  ++   L Q   HR  + 
Sbjct: 300 LPANCIILVPPHLQAQLDQ---HRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 55/235 (23%), Positives = 87/235 (37%), Gaps = 39/235 (16%)

Query: 125 LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMV 184
              LEL     L   P     LS L  +T+           L  + +        E + +
Sbjct: 83  RVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-------GLMELPDTMQQFAGLETLTL 134

Query: 185 NGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNG 244
                L+ LP  +  L+RL+++ IR CP L   PE            + + +        
Sbjct: 135 ARN-PLRALPASIASLNRLRELSIRACPELTELPE-----------PLASTD----ASGE 178

Query: 245 IHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI 303
              L + Q L +E   GI ++P +     NL  LKI + +   +L    +H L  L+EL 
Sbjct: 179 HQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRN-SPLSALGP-AIHHLPKLEELD 235

Query: 304 VNGEFPDMISFPQEEIGS-TSLTRLWIRDFQNLEYISS--------TVLDLHFCN 349
           + G    + ++P    G    L RL ++D  NL  +            LDL  C 
Sbjct: 236 LRG-CTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 40/270 (14%), Positives = 74/270 (27%), Gaps = 58/270 (21%)

Query: 136 LVNLPQALHCLSSLTEITVAGCTKLVSF--------LELSSVAEMFAIITSFEN-----I 182
           + +     H  S    +   G T L  +           ++    +       N     I
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 183 MVNGCDNLKCLPHELHKLSR--LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEA 240
                  LK     L   ++     +E+R+   L  FP++    ++L  + +     L  
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLME 118

Query: 241 LLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSL--------FQW 291
           L + + +    + LT+ + P + A+P +      L  L I        L           
Sbjct: 119 LPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 292 GLHRLNSLKELIVNG----EFPDMI-----------------SFPQEEIGS-TSLTRLWI 329
               L +L+ L +        P  I                 +     I     L  L +
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDL 236

Query: 330 RDFQNLEYI--------SSTVLDLHFCNYI 351
           R    L               L L  C+ +
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 5/117 (4%)

Query: 5   DRAISDDIWLGELQNLAYHLKDILDELDTEAL---QRKLLFKPDQPSTSKAWKLIIRTCC 61
            R           +++      I+D + ++       +   + +     +A  LI     
Sbjct: 5   ARNCLLQHREALEKDIK--TSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILK 62

Query: 62  SNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSV 118
            + ++    +NA +    KD    L +          K +    +  V   L    V
Sbjct: 63  KDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGV 119

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 26/131 (19%), Positives = 37/131 (28%), Gaps = 4/131 (3%)

Query: 124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIM 183
            LK L+L     L  L   L     L E+   G T  V     S ++   +       + 
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271

Query: 184 VNGCDNLKCLPHELHKLSRLQQIEIRNCP----SLVSFPERGLPSTNLTAVCVINCEKLE 239
                    LP      SRL  + +         LV    +      L  +  I    LE
Sbjct: 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE 331

Query: 240 ALLNGIHRLTS 250
            L +    L  
Sbjct: 332 VLASTCKDLRE 342

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.71
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.71
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.67
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.64
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.6
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.57
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.56
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.55
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.53
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.53
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.48
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.47
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.46
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.44
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.44
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.4
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.37
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.33
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.33
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.31
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.29
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.27
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.2
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.18
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.04
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.03
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.02
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.98
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.94
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.9
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.88
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.86
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.84
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.81
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.65
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.4
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.28
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.79
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.18
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.84
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.03
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.75
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	95.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.29
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	84.82

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.5e-20  Score=172.46  Aligned_cols=201  Identities=21%  Similarity=0.300  Sum_probs=111.3

Q ss_pred             cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      .++.+++|++|+++++. +..+|..++.+++|++|+++++ .+..+|..+..      +++|+.|++++|.....+|..+
T Consensus        99 ~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~------l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIAS------LNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             CGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGG------CTTCCEEEEEEETTCCCCCSCS
T ss_pred             hhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHhc------CcCCCEEECCCCCCccccChhH
Confidence            34556666666666554 3355655666666666666653 34455554444      5666666666655555555544


Q ss_pred             CC---------CCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC
Q 037573          198 HK---------LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN  268 (357)
Q Consensus       198 ~~---------l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~  268 (357)
                      ..         +++|+.|+++++ .+..+|.....+++|++|++++|. +..+|..+..+++|++|++++|.....+|..
T Consensus       171 ~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~  248 (328)
T 4fcg_A          171 ASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI  248 (328)
T ss_dssp             EEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred             hhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHH
Confidence            33         566666666653 444454422222366666665533 4455555666666666666665555555543


Q ss_pred             -CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573          269 -DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR  330 (357)
Q Consensus       269 -~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~  330 (357)
                       +.+++|++|++++|+....++.. +..+++|++|++++ |+.++.+|..+..+++|+.+.+.
T Consensus       249 ~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~-n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          249 FGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRG-CVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTT-CTTCCCCCGGGGGSCTTCEEECC
T ss_pred             hcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCC-CCchhhccHHHhhccCceEEeCC
Confidence             33556666666665544444433 55666666666666 66666666655555555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=1.9e-20  Score=171.66  Aligned_cols=206  Identities=22%  Similarity=0.320  Sum_probs=176.1

Q ss_pred             CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573          122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS  201 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~  201 (357)
                      .++++.|+++++. +..+|..++.+++|++|+++++ .+..+|..+..      +++|++|++++| .+..+|..++.++
T Consensus        80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~------l~~L~~L~Ls~n-~l~~lp~~l~~l~  150 (328)
T 4fcg_A           80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQ------FAGLETLTLARN-PLRALPASIASLN  150 (328)
T ss_dssp             STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGG------GTTCSEEEEESC-CCCCCCGGGGGCT
T ss_pred             ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCC-CccchhHHHhc------cCCCCEEECCCC-ccccCcHHHhcCc
Confidence            5789999999976 6789998999999999999985 56688877666      999999999996 4678999999999


Q ss_pred             CccEEEecCCCCCcccCCCCCC---------CCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCC
Q 037573          202 RLQQIEIRNCPSLVSFPERGLP---------STNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYP  271 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~~~~~---------~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~  271 (357)
                      +|+.|++++|..+..+|.....         +++|++|+++++ .++.+|..+..+++|++|++++| .+..+|.. +.+
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l  228 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHL  228 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGC
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccC
Confidence            9999999999888888874411         349999999986 47789989999999999999995 56667654 447


Q ss_pred             CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccccc
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISS  340 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~~  340 (357)
                      ++|+.|++++|+....++. .+..+++|++|++++ |+.++.+|..+..+++|++|++++|+.+..++.
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKD-CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTT-CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             CCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCC-CCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            8999999999776666655 478999999999999 999999999888899999999999988888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=9.7e-20  Score=165.91  Aligned_cols=252  Identities=14%  Similarity=0.049  Sum_probs=185.6

Q ss_pred             ccceEEeeccCCCCC---CCCccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCccc
Q 037573           50 SKAWKLIIRTCCSNF---NTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLK  126 (357)
Q Consensus        50 ~~l~~l~l~~c~~~~---~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  126 (357)
                      .+++.++++++....   ..+.+..+++|+.+.+.+...+...                         .+..++.+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-------------------------~p~~l~~l~~L~  104 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-------------------------IPPAIAKLTQLH  104 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-------------------------CCGGGGGCTTCS
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-------------------------CChhHhcCCCCC
Confidence            589999999887442   3446777777777777643322211                         133477899999


Q ss_pred             EEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC-CccE
Q 037573          127 YLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS-RLQQ  205 (357)
Q Consensus       127 ~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~  205 (357)
                      +|+++++...+.+|..++.+++|++|+++++.-...+|..+..      +++|++|+++++.....+|..++.++ +|+.
T Consensus       105 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~  178 (313)
T 1ogq_A          105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS------LPNLVGITFDGNRISGAIPDSYGSFSKLFTS  178 (313)
T ss_dssp             EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG------CTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred             EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc------CCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence            9999998755578888999999999999986433367766666      89999999999754447899999998 9999


Q ss_pred             EEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCc
Q 037573          206 IEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIF  285 (357)
Q Consensus       206 L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l  285 (357)
                      |+++++.-...+|.....+ +|++|+++++.--...|..+..+++|++|+++++.-...++....+++|++|++++ +.+
T Consensus       179 L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~-N~l  256 (313)
T 1ogq_A          179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN-NRI  256 (313)
T ss_dssp             EECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS-SCC
T ss_pred             EECcCCeeeccCChHHhCC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC-Ccc
Confidence            9999864333444432222 49999999976545667788999999999999964333444445578999999999 667


Q ss_pred             eecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccc
Q 037573          286 KSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLE  336 (357)
Q Consensus       286 ~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~  336 (357)
                      +...+..+..+++|++|++++ |.--+.+|.. ..+++|+.|++.+.+.+-
T Consensus       257 ~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~~-~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          257 YGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQG-GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EECCCGGGGGCTTCCEEECCS-SEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred             cCcCChHHhcCcCCCEEECcC-CcccccCCCC-ccccccChHHhcCCCCcc
Confidence            744444588999999999998 5433467765 467788888887766554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.80  E-value=1.6e-19  Score=183.77  Aligned_cols=231  Identities=11%  Similarity=0.015  Sum_probs=138.7

Q ss_pred             cccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc
Q 037573          116 TSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH  195 (357)
Q Consensus       116 ~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~  195 (357)
                      +..++.+++|++|+++++...+.+|..++.+++|++|++++|.-...+|..+..      +++|+.|++++|.....+|.
T Consensus       459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR------LENLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG------CTTCCEEECCSSCCEEECCG
T ss_pred             CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc------CCCCCEEECCCCcccCcCCH
Confidence            344566777777777777655566766777777777777776544456655555      77788888887765556777


Q ss_pred             ccCCCCCccEEEecCCCCCcccCCCC------------------------------------------------------
Q 037573          196 ELHKLSRLQQIEIRNCPSLVSFPERG------------------------------------------------------  221 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~l~~~~------------------------------------------------------  221 (357)
                      .++.+++|+.|+++++.-...+|...                                                      
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP  612 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred             HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            77778888888877654332332200                                                      


Q ss_pred             ----------------CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCC
Q 037573          222 ----------------LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNI  284 (357)
Q Consensus       222 ----------------~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~  284 (357)
                                      -.+++|++|+++++.-...+|..++.++.|+.|+++++.-...+|.. +.+++|++|++++ +.
T Consensus       613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~-N~  691 (768)
T 3rgz_A          613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NK  691 (768)
T ss_dssp             SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SC
T ss_pred             cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC-Cc
Confidence                            00136777888776655577777888888888888875433355554 4467888888888 56


Q ss_pred             ceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccc------ccccccccccccCCCccc
Q 037573          285 FKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEY------ISSTVLDLHFCNYIPRDV  355 (357)
Q Consensus       285 l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~------l~~~~~~~~~~~~i~~~~  355 (357)
                      ++...+..+..+++|++|++++ |+--+.+|... .+.++....+.+.+.|=-      -...+-+|.+|.|+|+.+
T Consensus       692 l~g~ip~~l~~l~~L~~L~ls~-N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          692 LDGRIPQAMSALTMLTEIDLSN-NNLSGPIPEMG-QFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             CEECCCGGGGGCCCCSEEECCS-SEEEEECCSSS-SGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred             ccCcCChHHhCCCCCCEEECcC-CcccccCCCch-hhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence            6644444577888888888887 54445667554 455555555555443321      122677888898888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=1.3e-17  Score=160.41  Aligned_cols=201  Identities=21%  Similarity=0.285  Sum_probs=134.6

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCccc-ccc
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCL-PHE  196 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~  196 (357)
                      +..+++|++|+++++......+..+..+++|++|+++++ .+..++.. +..      +++|+.|+++++. +..+ +..
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~------l~~L~~L~l~~n~-i~~~~~~~  195 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSH------LHGLIVLRLRHLN-INAIRDYS  195 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTT------CTTCCEEEEESCC-CCEECTTC
T ss_pred             ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcc------cCCCcEEeCCCCc-CcEeChhh
Confidence            444555555555554322222334555555666666553 33333322 123      6777777777754 3444 335


Q ss_pred             cCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCCCC
Q 037573          197 LHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTN  273 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~  273 (357)
                      +..+++|+.|++++|..+..++...+...+|++|++++|. ++.+| ..+..+++|++|+++++ .+..++..  ..+++
T Consensus       196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~  273 (477)
T 2id5_A          196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLR  273 (477)
T ss_dssp             SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTT
T ss_pred             cccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCC-cCCccChhhcccccc
Confidence            6677888888888887777777655555588888888864 56665 46788899999999885 56666654  33678


Q ss_pred             cceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEecccC
Q 037573          274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRDF  332 (357)
Q Consensus       274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~c  332 (357)
                      |+.|++++ +.++.+.+..+..+++|++|++++  +.+..++... ..+++|++|++++.
T Consensus       274 L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          274 LQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSG--NQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CCEEECCS-SCCSEECTTTBTTCTTCCEEECCS--SCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             CCEEECCC-CccceECHHHhcCcccCCEEECCC--CcCceeCHhHcCCCcccCEEEccCC
Confidence            99999998 667777666678889999999998  6788877643 35688888888753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.77  E-value=3.9e-18  Score=169.97  Aligned_cols=266  Identities=14%  Similarity=0.126  Sum_probs=178.4

Q ss_pred             CcccceEEeeccCCCCCCC-CccccccchhHHHhhhccccc--ccchhhhhh-------hccCCccccccccccccCCcc
Q 037573           48 STSKAWKLIIRTCCSNFNT-PSLMFNASMRYKLKDSTTRLQ--EIDMEKEQL-------ILKSNSGERSKKVGQRLSTTS  117 (357)
Q Consensus        48 ~~~~l~~l~l~~c~~~~~~-~~l~~l~~L~~l~~~~~~~l~--~i~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~  117 (357)
                      ..++++.|++++|.....+ +.++.+++|+.+.+.++..+.  .++.....+       .+.........  ...++...
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--l~~ip~~~  324 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--LKTFPVET  324 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--CSSCCCHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--CCccCchh
Confidence            5678999999999844444 468899999999988876444  355544332       22222211111  11222111


Q ss_pred             cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccccccccccccc-ccEEEeeCCCCCcccccc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITS-FENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~-L~~L~l~~c~~l~~lp~~  196 (357)
                      .++.+++|+.|+++++...+.+| .++.+++|++|+++++ .+..+|..+..      +++ |+.|+++++. +..+|..
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~------l~~~L~~L~Ls~N~-l~~lp~~  395 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCG------FTEQVENLSFAHNK-LKYIPNI  395 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEE------ECTTCCEEECCSSC-CSSCCSC
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhh------hcccCcEEEccCCc-Ccccchh
Confidence            57888999999998887544788 6888889999999885 56677776666      777 8889988864 5678877


Q ss_pred             cCCCC--CccEEEecCCCCCcccCCCC-------CCCCCcceEEeccCCcchhhHhhh-ccCCcccceeeccCcCccccC
Q 037573          197 LHKLS--RLQQIEIRNCPSLVSFPERG-------LPSTNLTAVCVINCEKLEALLNGI-HRLTSHQQLTVEQCPGIVAIP  266 (357)
Q Consensus       197 l~~l~--~L~~L~l~~c~~l~~l~~~~-------~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~  266 (357)
                      +...+  +|+.|+++++.-....|...       +.+++|++|+++++. ++.+|..+ ..+++|++|+++++ .+..+|
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~  473 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGN-MLTEIP  473 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSS-CCSBCC
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCC-CCCCcC
Confidence            76644  78888888764433333211       133478888887754 55666543 45788888888774 566666


Q ss_pred             CCCC--CC-------CcceEEecCCCCceeccccccc--ccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573          267 ENDY--PT-------NLTILKITDVNIFKSLFQWGLH--RLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR  330 (357)
Q Consensus       267 ~~~~--~~-------~L~~L~l~~c~~l~~~~~~~l~--~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~  330 (357)
                      ...+  ..       +|+.|++++ +.++.++.. +.  .+++|++|++++  +.+..+|..+..+++|++|+++
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~~~l~~L~~L~Ls~--N~l~~ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRF-NKLTKLSDD-FRATTLPYLVGIDLSY--NSFSKFPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCS-SCCCBCCGG-GSTTTCTTCCEEECCS--SCCSSCCCGGGGCSSCCEEECC
T ss_pred             HHHhccccccccccCCccEEECcC-CcCCccChh-hhhccCCCcCEEECCC--CCCCCcChhhhcCCCCCEEECC
Confidence            5532  11       788888887 566666554 44  778888888887  5666677777677788888774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=1.3e-17  Score=159.45  Aligned_cols=129  Identities=12%  Similarity=-0.007  Sum_probs=72.4

Q ss_pred             ccceEEeeccCCCCCC-CCccccccchhHHHhhhcccccccch-hhhhh-hccCCccccccccccccCCcccccCCCccc
Q 037573           50 SKAWKLIIRTCCSNFN-TPSLMFNASMRYKLKDSTTRLQEIDM-EKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLK  126 (357)
Q Consensus        50 ~~l~~l~l~~c~~~~~-~~~l~~l~~L~~l~~~~~~~l~~i~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  126 (357)
                      ++++.|+++++..... ...+..+++|+.+.+.++.....+.. .+..+ .++.........  . -..+..++.+++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l--~-~~~~~~~~~l~~L~  106 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF--L-QLETGAFNGLANLE  106 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT--C-EECTTTTTTCTTCC
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc--C-ccChhhccCcccCC
Confidence            5788888887764332 34567777777777766543223321 11111 111111111100  0 01134467788888


Q ss_pred             EEeeccCcCccccccc--cCCCCCcCEEeecCCCcchhc-ccc-ccccccccccccccEEEeeCCC
Q 037573          127 YLELIDCECLVNLPQA--LHCLSSLTEITVAGCTKLVSF-LEL-SSVAEMFAIITSFENIMVNGCD  188 (357)
Q Consensus       127 ~L~l~~~~~l~~lp~~--~~~l~~L~~L~i~~c~~l~~~-~~~-~~~L~~L~~l~~L~~L~l~~c~  188 (357)
                      +|++++|..-+.++..  ++.+++|++|+++++. +..+ |.. +..      +++|+.|+++++.
T Consensus       107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~------l~~L~~L~L~~n~  165 (455)
T 3v47_A          107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLN------MRRFHVLDLTFNK  165 (455)
T ss_dssp             EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGG------CTTCCEEECTTCC
T ss_pred             EEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCC------CCcccEEeCCCCc
Confidence            8888887643334443  7778888888888753 4444 332 234      7888888888764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.77  E-value=2.2e-18  Score=175.43  Aligned_cols=134  Identities=16%  Similarity=0.064  Sum_probs=57.0

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      ++.+++|++|+++++...+.+|..++.+++|++|+++++.....+|..+..      +++|+.|++++|.....+|..+.
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY------VKTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG------CTTCCEEECCSSCCCSCCCGGGG
T ss_pred             HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC------CCCceEEEecCCcccCcCCHHHh
Confidence            445555555555555433344545555555555555554333334443333      44444444444332223344444


Q ss_pred             CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc
Q 037573          199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ  258 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  258 (357)
                      .+++|+.|++++|.-...+|.....+++|++|++++|.....+|..+..+++|++|++++
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence            444444444444332223332111112444444444333333344444444444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.3e-17  Score=170.41  Aligned_cols=266  Identities=15%  Similarity=0.152  Sum_probs=182.3

Q ss_pred             CcccceEEeeccCCCCCCCC-ccccccchhHHHhhhcccccc--cchhhhhhh--------ccCCccccccccccccCCc
Q 037573           48 STSKAWKLIIRTCCSNFNTP-SLMFNASMRYKLKDSTTRLQE--IDMEKEQLI--------LKSNSGERSKKVGQRLSTT  116 (357)
Q Consensus        48 ~~~~l~~l~l~~c~~~~~~~-~l~~l~~L~~l~~~~~~~l~~--i~~~~~~l~--------~~~~~~~~~~~~~~~~~~~  116 (357)
                      ..++++.|++++|.....+| .++.+++|+.+.+.++..+..  ++..+..+.        +..+......  ...++..
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~~ip~~  566 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LEEFPAS  566 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CCBCCCH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CCccCCh
Confidence            56789999999998444444 688999999999888764443  555444332        2222211211  1122221


Q ss_pred             ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccccccccccccc-ccEEEeeCCCCCccccc
Q 037573          117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITS-FENIMVNGCDNLKCLPH  195 (357)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~-L~~L~l~~c~~l~~lp~  195 (357)
                      ..++.+++|+.|+++++. +..+| .++.+++|+.|+++++ .+..+|..+..      +++ |+.|++++|. +..+|.
T Consensus       567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~------l~~~L~~L~Ls~N~-L~~lp~  636 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCA------FTDQVEGLGFSHNK-LKYIPN  636 (876)
T ss_dssp             HHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCE------ECTTCCEEECCSSC-CCSCCS
T ss_pred             hhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCC-ccccchHHHhh------ccccCCEEECcCCC-CCcCch
Confidence            158889999999999886 45888 6889999999999985 46678876666      788 9999999865 668887


Q ss_pred             ccCCCC--CccEEEecCCCCCcccCC-----CCCCCCCcceEEeccCCcchhhHhhh-ccCCcccceeeccCcCccccCC
Q 037573          196 ELHKLS--RLQQIEIRNCPSLVSFPE-----RGLPSTNLTAVCVINCEKLEALLNGI-HRLTSHQQLTVEQCPGIVAIPE  267 (357)
Q Consensus       196 ~l~~l~--~L~~L~l~~c~~l~~l~~-----~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~~  267 (357)
                      .+..++  +|+.|+++++.-...+|.     ..+..++|+.|++++|. +..+|..+ ..+++|++|+++++ .+..+|.
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~  714 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPE  714 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccCh
Confidence            776654  489999988643332221     22233478888887754 56777655 36788888888874 5667766


Q ss_pred             CCC--C-------CCcceEEecCCCCceeccccccc--ccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          268 NDY--P-------TNLTILKITDVNIFKSLFQWGLH--RLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       268 ~~~--~-------~~L~~L~l~~c~~l~~~~~~~l~--~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      ..+  .       ++|+.|++++ +.++.++.. +.  .+++|+.|++++  +.+..+|..+..+++|+.|++++
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~lp~~-l~~~~l~~L~~L~Ls~--N~L~~lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRF-NKLTSLSDD-FRATTLPYLSNMDVSY--NCFSSFPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCS-SCCCCCCGG-GSTTTCTTCCEEECCS--SCCSSCCCGGGGCTTCCEEECCC
T ss_pred             HHhccccccccccCCccEEECCC-CCCccchHH-hhhccCCCcCEEEeCC--CCCCccchhhhcCCCCCEEECCC
Confidence            522  1       2788888888 466666554 44  778888888887  56777777776777888887754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.75  E-value=5.3e-17  Score=156.18  Aligned_cols=266  Identities=16%  Similarity=0.175  Sum_probs=175.7

Q ss_pred             ccceEEeeccCCCCCC-CCccccccchhHHHhhhccccccc-chhhhhh-hccCCccccccccccccCCcccccCCCccc
Q 037573           50 SKAWKLIIRTCCSNFN-TPSLMFNASMRYKLKDSTTRLQEI-DMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLK  126 (357)
Q Consensus        50 ~~l~~l~l~~c~~~~~-~~~l~~l~~L~~l~~~~~~~l~~i-~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  126 (357)
                      ++++.|+++++..... ...+..+++|+.+.+.++ .+..+ +..+..+ .++.+......  ...++ ...+..+++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~-~~~~~~l~~L~  107 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR--LKLIP-LGVFTGLSNLT  107 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC--CCSCC-TTSSTTCTTCC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc--CCccC-cccccCCCCCC
Confidence            4677888877763222 335667777777777654 23333 2222221 11111111110  01111 22356778888


Q ss_pred             EEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCccccc-ccCCCCCcc
Q 037573          127 YLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLSRLQ  204 (357)
Q Consensus       127 ~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~  204 (357)
                      +|+++++......|..+..+++|++|+++++ .+..++. .+..      +++|+.|++++| .+..+|. .+..+++|+
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~  179 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSG------LNSLEQLTLEKC-NLTSIPTEALSHLHGLI  179 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTT------CTTCCEEEEESC-CCSSCCHHHHTTCTTCC
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccC------CCCCCEEECCCC-cCcccChhHhcccCCCc
Confidence            8888887644445666778888888888874 4444433 3334      788999999886 4556653 577889999


Q ss_pred             EEEecCCCCCcccCCCC-CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecC
Q 037573          205 QIEIRNCPSLVSFPERG-LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITD  281 (357)
Q Consensus       205 ~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~  281 (357)
                      .|+++++ .+..++... ..+++|++|++++|..+..+|.......+|++|+++++ .++.+|..  ..+++|+.|++++
T Consensus       180 ~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          180 VLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSY  257 (477)
T ss_dssp             EEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCS
T ss_pred             EEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCC
Confidence            9999875 455554422 22348999999998888888777666778999999885 67766632  3468999999998


Q ss_pred             CCCceecccccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccC
Q 037573          282 VNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       282 c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c  332 (357)
                       +.++.++...+..+++|++|++++  +.+..+ |..+..+++|++|+++++
T Consensus       258 -n~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          258 -NPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             -SCCCEECTTSCTTCTTCCEEECCS--SCCSEECTTTBTTCTTCCEEECCSS
T ss_pred             -CcCCccChhhccccccCCEEECCC--CccceECHHHhcCcccCCEEECCCC
Confidence             667777776678899999999998  566665 555557889999998754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=2.9e-17  Score=151.31  Aligned_cols=146  Identities=18%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             cccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccce
Q 037573          176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQL  254 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  254 (357)
                      +++|+.|++++| .+..++. +..+++|+.++++++ .+..++. ..+  ++|++|++++|. ++.++. +..+++|++|
T Consensus       176 l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~--~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L  248 (347)
T 4fmz_A          176 LTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITPVANM--TRLNSLKIGNNK-ITDLSP-LANLSQLTWL  248 (347)
T ss_dssp             CTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGC--TTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred             CCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCchhhcC--CcCCEEEccCCc-cCCCcc-hhcCCCCCEE
Confidence            555555555554 2344433 445555555555553 2332221 222  366777776643 444443 6666777777


Q ss_pred             eeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573          255 TVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ  333 (357)
Q Consensus       255 ~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~  333 (357)
                      ++++| .+..++....+++|+.|++++ +.++.++  .+..+++|++|++++ |.--...+..+..+++|++|++++++
T Consensus       249 ~l~~n-~l~~~~~~~~l~~L~~L~l~~-n~l~~~~--~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          249 EIGTN-QISDINAVKDLTKLKMLNVGS-NQISDIS--VLNNLSQLNSLFLNN-NQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             ECCSS-CCCCCGGGTTCTTCCEEECCS-SCCCCCG--GGGGCTTCSEEECCS-SCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             ECCCC-ccCCChhHhcCCCcCEEEccC-CccCCCh--hhcCCCCCCEEECcC-CcCCCcChhHhhccccCCEEEccCCc
Confidence            77664 455444334456777777776 3455443  246667777777776 43222223333356677777777664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.74  E-value=1.5e-17  Score=164.66  Aligned_cols=266  Identities=14%  Similarity=0.022  Sum_probs=184.6

Q ss_pred             CCcccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCccc
Q 037573           47 PSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLK  126 (357)
Q Consensus        47 ~~~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  126 (357)
                      ...++++.+.+.++.. ..+|.+..+++|+.+.+.++.- ..++.. ..-.++.......     .......++.+++|+
T Consensus       282 ~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n-----~~~~~~~~~~l~~L~  353 (606)
T 3vq2_A          282 HCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMN-----KGSISFKKVALPSLS  353 (606)
T ss_dssp             GGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESC-----SSCEECCCCCCTTCC
T ss_pred             ccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccccC-CCCccceeeccCC-----cCccchhhccCCCCC
Confidence            3456788888888764 3344677777787777776543 444421 0001111111111     011122466789999


Q ss_pred             EEeeccCcCcccc---ccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc-cccCCCCC
Q 037573          127 YLELIDCECLVNL---PQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP-HELHKLSR  202 (357)
Q Consensus       127 ~L~l~~~~~l~~l---p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~  202 (357)
                      +|+++++. +..+   |..+..+++|++|+++++. +..+|..+..      +++|+.|++++|......| ..+..+++
T Consensus       354 ~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          354 YLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMG------LEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             EEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTT------CTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             EEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccC------CCCCCeeECCCCccCCccChhhhhcccc
Confidence            99999875 3443   6678889999999999864 6667755556      8999999999875333334 46788999


Q ss_pred             ccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchh-hHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEe
Q 037573          203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEA-LLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKI  279 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l  279 (357)
                      |+.|++++|......|.....+++|++|++++|..... +|..+..+++|++|++++| .++.++..  +.+++|++|++
T Consensus       426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEEC
Confidence            99999998754444444222334999999998764332 6778899999999999996 56555443  34789999999


Q ss_pred             cCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCC-CcceEecccC
Q 037573          280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGST-SLTRLWIRDF  332 (357)
Q Consensus       280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~-sL~~L~l~~c  332 (357)
                      ++ +.++.+.+..+..+++|++|++++  +.+..+|..+...+ +|++|++++.
T Consensus       505 s~-N~l~~~~~~~~~~l~~L~~L~l~~--N~l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          505 SH-NNLLFLDSSHYNQLYSLSTLDCSF--NRIETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             CS-SCCSCEEGGGTTTCTTCCEEECTT--SCCCCEESCGGGSCTTCCEEECCSC
T ss_pred             CC-CcCCCcCHHHccCCCcCCEEECCC--CcCcccCHhHhhhcccCcEEEccCC
Confidence            99 567766556688999999999998  57889988765554 6999999864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=1.9e-17  Score=158.24  Aligned_cols=278  Identities=15%  Similarity=0.102  Sum_probs=159.8

Q ss_pred             CCcccceEEeeccCCCCCC--CCccccccchhHHHhhhccccccc-chhhhhh-hccCCccccccccccccCCcccccCC
Q 037573           47 PSTSKAWKLIIRTCCSNFN--TPSLMFNASMRYKLKDSTTRLQEI-DMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVL  122 (357)
Q Consensus        47 ~~~~~l~~l~l~~c~~~~~--~~~l~~l~~L~~l~~~~~~~l~~i-~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l  122 (357)
                      ..+++++.|++++|.....  ...+..+++|+.+.+.++. +..+ +..+..+ .++......+... ...+....++.+
T Consensus        51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l  128 (455)
T 3v47_A           51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPL  128 (455)
T ss_dssp             SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCB-THHHHSSTTTTC
T ss_pred             ccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCC-ccccCcccccCc
Confidence            4567899999998864322  3357788888888887754 3333 3333222 1221111111100 001112237788


Q ss_pred             CcccEEeeccCcCccccccc-cCCCCCcCEEeecCCCcchhc-ccccccc-----cccc---------------------
Q 037573          123 CRLKYLELIDCECLVNLPQA-LHCLSSLTEITVAGCTKLVSF-LELSSVA-----EMFA---------------------  174 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~-~~~~~~L-----~~L~---------------------  174 (357)
                      ++|++|+++++......|.. ++.+++|++|+++++. +..+ +..+..+     +.|.                     
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  207 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN  207 (455)
T ss_dssp             TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred             ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence            99999999988643334554 7789999999998854 3333 2222211     1111                     


Q ss_pred             --ccccccEEEeeCCCCCcccccccCC---------------------------------------CCCccEEEecCCCC
Q 037573          175 --IITSFENIMVNGCDNLKCLPHELHK---------------------------------------LSRLQQIEIRNCPS  213 (357)
Q Consensus       175 --~l~~L~~L~l~~c~~l~~lp~~l~~---------------------------------------l~~L~~L~l~~c~~  213 (357)
                        .+++|+.|++++|......|..+..                                       .++|+.|+++++.-
T Consensus       208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  287 (455)
T 3v47_A          208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI  287 (455)
T ss_dssp             TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred             ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence              1356777777776432222222211                                       24566666666432


Q ss_pred             CcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccc
Q 037573          214 LVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQW  291 (357)
Q Consensus       214 l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~  291 (357)
                      ....+.....+++|++|+++++.--...|..+..+++|++|+++++ .+..++..  +.+++|++|++++ +.++.+.+.
T Consensus       288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~  365 (455)
T 3v47_A          288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY-NHIRALGDQ  365 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCS-SCCCEECTT
T ss_pred             cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCC-CcccccChh
Confidence            2222322222347778877775533333456777778888888774 45555332  3367788888887 556666555


Q ss_pred             cccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEeccc
Q 037573          292 GLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRD  331 (357)
Q Consensus       292 ~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~  331 (357)
                      .+..+++|++|++++  +.+..+|... ..+++|++|++++
T Consensus       366 ~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          366 SFLGLPNLKELALDT--NQLKSVPDGIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             TTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             hccccccccEEECCC--CccccCCHhHhccCCcccEEEccC
Confidence            577788888888887  5677776544 3567888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=2.3e-16  Score=144.45  Aligned_cols=196  Identities=13%  Similarity=0.180  Sum_probs=118.7

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCC--ccccc
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNL--KCLPH  195 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l--~~lp~  195 (357)
                      ++.+++|++|+++++. ++.+|..+.  ++|++|+++++ .+..++.. +..      +++|+.|+++++..-  ...+.
T Consensus        96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~  165 (330)
T 1xku_A           96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNG------LNQMIVVELGTNPLKSSGIENG  165 (330)
T ss_dssp             TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTT------CTTCCEEECCSSCCCGGGBCTT
T ss_pred             hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCC-cccccCHhHhcC------CccccEEECCCCcCCccCcChh
Confidence            4445555555555543 344444332  45555555553 23333321 123      677777877775421  13355


Q ss_pred             ccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCC
Q 037573          196 ELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPT  272 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~  272 (357)
                      .+..+++|+.|+++++ .+..+|....+  +|++|+++++. ++.+ |..+..+++|++|+++++ .+..++..  ..++
T Consensus       166 ~~~~l~~L~~L~l~~n-~l~~l~~~~~~--~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~  240 (330)
T 1xku_A          166 AFQGMKKLSYIRIADT-NITTIPQGLPP--SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTP  240 (330)
T ss_dssp             GGGGCTTCCEEECCSS-CCCSCCSSCCT--TCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGST
T ss_pred             hccCCCCcCEEECCCC-ccccCCccccc--cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCC
Confidence            6667778888888764 56666665444  78888887755 4444 556777888888888774 56555543  2367


Q ss_pred             CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-------CCCCcceEecccCc
Q 037573          273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-------GSTSLTRLWIRDFQ  333 (357)
Q Consensus       273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-------~~~sL~~L~l~~c~  333 (357)
                      +|++|++++ +.++.++.+ +..+++|++|++++  +.+..++...+       ..++|+.|++.+-|
T Consensus       241 ~L~~L~L~~-N~l~~lp~~-l~~l~~L~~L~l~~--N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          241 HLRELHLNN-NKLVKVPGG-LADHKYIQVVYLHN--NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             TCCEEECCS-SCCSSCCTT-TTTCSSCCEEECCS--SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCCEEECCC-CcCccCChh-hccCCCcCEEECCC--CcCCccChhhcCCcccccccccccceEeecCc
Confidence            888888887 566666554 67778888888887  56777765442       13566666666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.73  E-value=8.8e-18  Score=167.38  Aligned_cols=269  Identities=9%  Similarity=0.032  Sum_probs=198.1

Q ss_pred             CCcccceEEeeccCCCCC------------------CCCccc--cccchhHHHhhhcccccccchhhhhh-hccCCcccc
Q 037573           47 PSTSKAWKLIIRTCCSNF------------------NTPSLM--FNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGER  105 (357)
Q Consensus        47 ~~~~~l~~l~l~~c~~~~------------------~~~~l~--~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~  105 (357)
                      ...++++.|+++++....                  .++.++  .+++|+.+.+.++.-...++..+..+ .++......
T Consensus       203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            356789999999998544                  455677  89999999998877666666555433 222222111


Q ss_pred             cc-ccccccCCcccccCC------CcccEEeeccCcCcccccc--ccCCCCCcCEEeecCCCcch-hccccccccccccc
Q 037573          106 SK-KVGQRLSTTSVIQVL------CRLKYLELIDCECLVNLPQ--ALHCLSSLTEITVAGCTKLV-SFLELSSVAEMFAI  175 (357)
Q Consensus       106 ~~-~~~~~~~~~~~~~~l------~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~i~~c~~l~-~~~~~~~~L~~L~~  175 (357)
                      .. ....  ..|..++.+      ++|++|+++++. +..+|.  .++.+++|++|+++++. +. .+| .+..      
T Consensus       283 n~~l~~~--~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~------  351 (636)
T 4eco_A          283 NRGISGE--QLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGS------  351 (636)
T ss_dssp             CTTSCHH--HHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEE------
T ss_pred             CCCCccc--cchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCC------
Confidence            11 0000  113334444      899999999986 458888  89999999999999864 44 777 5445      


Q ss_pred             cccccEEEeeCCCCCcccccccCCCCC-ccEEEecCCCCCcccCCCCC--CCCCcceEEeccCCcchhhHhhhc------
Q 037573          176 ITSFENIMVNGCDNLKCLPHELHKLSR-LQQIEIRNCPSLVSFPERGL--PSTNLTAVCVINCEKLEALLNGIH------  246 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~------  246 (357)
                      +++|+.|+++++ .+..+|..+..+++ |+.|+++++ .+..+|....  ..++|++|+++++.-...+|..+.      
T Consensus       352 l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  429 (636)
T 4eco_A          352 EIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP  429 (636)
T ss_dssp             EEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred             CCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence            889999999996 46689999999999 999999986 4667876322  223899999999776556666676      


Q ss_pred             -cCCcccceeeccCcCccccCCCC--CCCCcceEEecCCCCceeccccccccc-------CCccEEEEeccCCCCCcCCC
Q 037573          247 -RLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITDVNIFKSLFQWGLHRL-------NSLKELIVNGEFPDMISFPQ  316 (357)
Q Consensus       247 -~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~l-------~~L~~L~l~~~c~~l~~l~~  316 (357)
                       .+++|++|+++++ .+..+|...  .+++|+.|++++ +.++.++...+...       ++|++|++++  +.+..+|.
T Consensus       430 ~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~lp~  505 (636)
T 4eco_A          430 FKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSIDLRF--NKLTKLSD  505 (636)
T ss_dssp             CCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGGGCCEEECCS--SCCCBCCG
T ss_pred             ccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCC-CCCCCcCHHHhccccccccccCCccEEECcC--CcCCccCh
Confidence             7789999999995 677777652  368999999999 66777766544333       3999999998  67889998


Q ss_pred             CCC--CCCCcceEecccC
Q 037573          317 EEI--GSTSLTRLWIRDF  332 (357)
Q Consensus       317 ~~~--~~~sL~~L~l~~c  332 (357)
                      .+.  .+++|++|+++++
T Consensus       506 ~~~~~~l~~L~~L~Ls~N  523 (636)
T 4eco_A          506 DFRATTLPYLVGIDLSYN  523 (636)
T ss_dssp             GGSTTTCTTCCEEECCSS
T ss_pred             hhhhccCCCcCEEECCCC
Confidence            876  7899999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.72  E-value=3.1e-17  Score=153.81  Aligned_cols=262  Identities=14%  Similarity=0.090  Sum_probs=132.1

Q ss_pred             CCcccceEEeeccCCCCCCCCc-cccccchhHHHhhhcccccccch-hhhhh-hccCCccccccccccccCCcccccCCC
Q 037573           47 PSTSKAWKLIIRTCCSNFNTPS-LMFNASMRYKLKDSTTRLQEIDM-EKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLC  123 (357)
Q Consensus        47 ~~~~~l~~l~l~~c~~~~~~~~-l~~l~~L~~l~~~~~~~l~~i~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      ...++++.+.+.++......+. +..+++|+.+.+.++. +..+.. .+..+ .+.........  ... ..+..++.++
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~  117 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA--IRY-LPPHVFQNVP  117 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC--CCC-CCTTTTTTCT
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC--CCc-CCHHHhcCCC
Confidence            3456788888887653222222 4566677776666543 333322 11111 01111100000  000 0122345566


Q ss_pred             cccEEeeccCcCccccccc-cCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573          124 RLKYLELIDCECLVNLPQA-LHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS  201 (357)
Q Consensus       124 ~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~  201 (357)
                      +|++|+++++. +..+|.. ++.+++|++|+++++ .+..++.. +..      +++|+.|+++++. +..++  +..++
T Consensus       118 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~--~~~l~  186 (390)
T 3o6n_A          118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQA------TTSLQNLQLSSNR-LTHVD--LSLIP  186 (390)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSS------CTTCCEEECCSSC-CSBCC--GGGCT
T ss_pred             CCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccC------CCCCCEEECCCCc-CCccc--ccccc
Confidence            66666666653 4455543 355666666666654 33333322 223      5666666666643 33332  23334


Q ss_pred             CccEEEecCC------------------CCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCcc
Q 037573          202 RLQQIEIRNC------------------PSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIV  263 (357)
Q Consensus       202 ~L~~L~l~~c------------------~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~  263 (357)
                      +|+.|+++++                  ..+..++....+  +|++|+++++. ++.. ..+..+++|++|+++++ .+.
T Consensus       187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n-~l~  261 (390)
T 3o6n_A          187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYN-ELE  261 (390)
T ss_dssp             TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS--SCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCC
T ss_pred             ccceeecccccccccCCCCcceEEECCCCeeeeccccccc--cccEEECCCCC-Cccc-HHHcCCCCccEEECCCC-cCC
Confidence            4444443332                  122222222222  56666665543 3333 35666777777777774 444


Q ss_pred             ccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          264 AIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       264 ~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      .++..  ..+++|++|++++ +.++.++.. ...+++|++|++++  +.+..+|.....+++|++|+++++
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~~l~~L~~L~L~~--n~l~~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISN-NRLVALNLY-GQPIPTLKVLDLSH--NHLLHVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCS-SCCCEEECS-SSCCTTCCEEECCS--SCCCCCGGGHHHHTTCSEEECCSS
T ss_pred             CcChhHccccccCCEEECCC-CcCcccCcc-cCCCCCCCEEECCC--CcceecCccccccCcCCEEECCCC
Confidence            44222  3356777777777 556655443 45677777777776  466666655545667777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=1.6e-16  Score=146.36  Aligned_cols=254  Identities=15%  Similarity=0.201  Sum_probs=176.9

Q ss_pred             CcccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhh-hccCCccccccccccccCCcccccCCCccc
Q 037573           48 STSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLK  126 (357)
Q Consensus        48 ~~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  126 (357)
                      .+++++++.+.++.. ..++.+..+++|+.+.+.++ .+..+.. +..+ .++......+     .+...+.+..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i-~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-----~i~~~~~~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKV-ASIQGIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-----KITDISALQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCC-CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-----CCCCCGGGTTCTTCS
T ss_pred             hcccccEEEEeCCcc-ccchhhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-----cccCchHHcCCCcCC
Confidence            456788888888764 33466778888888877765 3444443 2111 1221111111     122234577888899


Q ss_pred             EEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEE
Q 037573          127 YLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQI  206 (357)
Q Consensus       127 ~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  206 (357)
                      +|+++++. +..++. +..+++|++|++++|..+..++. ...      +++|+.|++++|. +..++. +..+++|+.|
T Consensus       114 ~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~------l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L  182 (347)
T 4fmz_A          114 ELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSN------MTGLNYLTVTESK-VKDVTP-IANLTDLYSL  182 (347)
T ss_dssp             EEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTT------CTTCCEEECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred             EEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhh------CCCCcEEEecCCC-cCCchh-hccCCCCCEE
Confidence            99998875 566665 77888899999988876665554 223      8889999998864 555554 7788999999


Q ss_pred             EecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCc
Q 037573          207 EIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIF  285 (357)
Q Consensus       207 ~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l  285 (357)
                      ++++| .+..++. ..+  ++|+.|+++++. +..++. +..+++|++|++++| .+..++....+++|++|++++ +.+
T Consensus       183 ~l~~n-~l~~~~~~~~l--~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~-n~l  255 (347)
T 4fmz_A          183 SLNYN-QIEDISPLASL--TSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGT-NQI  255 (347)
T ss_dssp             ECTTS-CCCCCGGGGGC--TTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCS-SCC
T ss_pred             EccCC-cccccccccCC--CccceeecccCC-CCCCch-hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCC-Ccc
Confidence            99886 4555543 333  489999998854 555543 788999999999986 566665545578999999999 567


Q ss_pred             eecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          286 KSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       286 ~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      +.++  .+..+++|++|++++ | .+..++. +..+++|++|++++|
T Consensus       256 ~~~~--~~~~l~~L~~L~l~~-n-~l~~~~~-~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          256 SDIN--AVKDLTKLKMLNVGS-N-QISDISV-LNNLSQLNSLFLNNN  297 (347)
T ss_dssp             CCCG--GGTTCTTCCEEECCS-S-CCCCCGG-GGGCTTCSEEECCSS
T ss_pred             CCCh--hHhcCCCcCEEEccC-C-ccCCChh-hcCCCCCCEEECcCC
Confidence            7653  367899999999998 4 7777753 446889999999876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=1.4e-16  Score=139.04  Aligned_cols=199  Identities=18%  Similarity=0.231  Sum_probs=157.5

Q ss_pred             CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc-ccCC
Q 037573          123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH-ELHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~  199 (357)
                      ++|++|+++++. ++.+|. .++.+++|++|+++++..+..++... ..      +++|+.|++++|+.+..+|. .+..
T Consensus        31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~------l~~L~~L~l~~~n~l~~i~~~~f~~  103 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN------LSKVTHIEIRNTRNLTYIDPDALKE  103 (239)
T ss_dssp             TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES------CTTCCEEEEEEETTCCEECTTSEEC
T ss_pred             CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC------CcCCcEEECCCCCCeeEcCHHHhCC
Confidence            489999999976 667665 68899999999999975577777643 35      88999999998667888874 5778


Q ss_pred             CCCccEEEecCCCCCcccCCCCCCCCCcc---eEEeccCCcchhhHh-hhccCCccc-ceeeccCcCccccCCCCC-CCC
Q 037573          200 LSRLQQIEIRNCPSLVSFPERGLPSTNLT---AVCVINCEKLEALLN-GIHRLTSHQ-QLTVEQCPGIVAIPENDY-PTN  273 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~---~L~l~~c~~l~~l~~-~~~~l~~L~-~L~l~~c~~l~~l~~~~~-~~~  273 (357)
                      +++|+.|+++++ .++.+|. ...+++|+   +|+++++..++.+|. .+..+++|+ +|++++ +.++.+|...+ .++
T Consensus       104 l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~  180 (239)
T 2xwt_C          104 LPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTK  180 (239)
T ss_dssp             CTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCE
T ss_pred             CCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCC
Confidence            999999999985 5666775 22233777   999999757787765 478899999 999988 46778877532 469


Q ss_pred             cceEEecCCCCceeccccccccc-CCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccc
Q 037573          274 LTILKITDVNIFKSLFQWGLHRL-NSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNL  335 (357)
Q Consensus       274 L~~L~l~~c~~l~~~~~~~l~~l-~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L  335 (357)
                      |+.|+++++..++.+++..+..+ ++|++|++++  +.+..+|..  .+++|++|++.++..|
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~--N~l~~l~~~--~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ--TSVTALPSK--GLEHLKELIARNTWTL  239 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT--CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCC--CccccCChh--HhccCceeeccCccCC
Confidence            99999999546888877778888 9999999998  788898875  4779999999887654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.71  E-value=2e-17  Score=150.60  Aligned_cols=205  Identities=13%  Similarity=0.059  Sum_probs=159.4

Q ss_pred             cccccCCCcccEEeecc-CcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc
Q 037573          116 TSVIQVLCRLKYLELID-CECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP  194 (357)
Q Consensus       116 ~~~~~~l~~L~~L~l~~-~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp  194 (357)
                      +..++.+++|++|++++ +...+.+|..++.+++|++|+++++.-...+|..+..      +++|++|+++++.....+|
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~~~p  142 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------IKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG------CTTCCEEECCSSEEESCCC
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC------CCCCCEEeCCCCccCCcCC
Confidence            45578899999999996 5544568888999999999999986433467766666      8999999999975444788


Q ss_pred             cccCCCCCccEEEecCCCCCcccCCCCCCCC-CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCC
Q 037573          195 HELHKLSRLQQIEIRNCPSLVSFPERGLPST-NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYP  271 (357)
Q Consensus       195 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~  271 (357)
                      ..+..+++|++|+++++.-...+|.....++ +|++|+++++.-...+|..+..++ |++|+++++ .+...+..  ..+
T Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l  220 (313)
T 1ogq_A          143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSD  220 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTT
T ss_pred             hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcC
Confidence            8999999999999998643336665333333 899999998765457788888887 999999995 45433322  347


Q ss_pred             CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCC-cCCCCCCCCCCcceEecccC
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMI-SFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~-~l~~~~~~~~sL~~L~l~~c  332 (357)
                      ++|+.|++++ +.++...+. +..+++|++|++++ | .+. .+|..+..+++|++|+++++
T Consensus       221 ~~L~~L~L~~-N~l~~~~~~-~~~l~~L~~L~Ls~-N-~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          221 KNTQKIHLAK-NSLAFDLGK-VGLSKNLNGLDLRN-N-RIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SCCSEEECCS-SEECCBGGG-CCCCTTCCEEECCS-S-CCEECCCGGGGGCTTCCEEECCSS
T ss_pred             CCCCEEECCC-CceeeecCc-ccccCCCCEEECcC-C-cccCcCChHHhcCcCCCEEECcCC
Confidence            8999999999 566644443 67889999999998 4 555 78887778899999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=4.5e-17  Score=166.34  Aligned_cols=269  Identities=9%  Similarity=0.036  Sum_probs=184.4

Q ss_pred             CCcccceEEeeccCCCCC------------------CCCccc--cccchhHHHhhhcccccccchhhhhh-hccCCcccc
Q 037573           47 PSTSKAWKLIIRTCCSNF------------------NTPSLM--FNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGER  105 (357)
Q Consensus        47 ~~~~~l~~l~l~~c~~~~------------------~~~~l~--~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~  105 (357)
                      ..+++++.|+++++....                  .++.++  .+++|+.+.+.++.-...++..+..+ .+..+....
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence            355789999999988444                  444556  88999999888877666666655443 222222111


Q ss_pred             cc-ccccccCCcc-------cccCCCcccEEeeccCcCcccccc--ccCCCCCcCEEeecCCCcchhccccccccccccc
Q 037573          106 SK-KVGQRLSTTS-------VIQVLCRLKYLELIDCECLVNLPQ--ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAI  175 (357)
Q Consensus       106 ~~-~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~  175 (357)
                      .. .....+  |.       .+..+++|+.|+++++. +..+|.  .++.+++|+.|+++++ .+..+| .+..      
T Consensus       525 N~~lsg~~i--P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~------  593 (876)
T 4ecn_A          525 NRGISAAQL--KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGT------  593 (876)
T ss_dssp             CTTSCHHHH--HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCT------
T ss_pred             CCCcccccc--hHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcC------
Confidence            11 000001  22       23345689999998876 458888  7888999999999885 455777 4445      


Q ss_pred             cccccEEEeeCCCCCcccccccCCCCC-ccEEEecCCCCCcccCCCC--CCCCCcceEEeccCCcchhhH---hhhc--c
Q 037573          176 ITSFENIMVNGCDNLKCLPHELHKLSR-LQQIEIRNCPSLVSFPERG--LPSTNLTAVCVINCEKLEALL---NGIH--R  247 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~l~~~~--~~~~~L~~L~l~~c~~l~~l~---~~~~--~  247 (357)
                      +++|+.|++++|. +..+|..+..+++ |+.|+++++ .+..+|...  .+.++|+.|++++|.....+|   ..+.  .
T Consensus       594 L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~  671 (876)
T 4ecn_A          594 NVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK  671 (876)
T ss_dssp             TSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred             CCcceEEECcCCc-cccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence            8889999998864 5588888888888 999999986 466777522  222358999998865433222   2222  3


Q ss_pred             CCcccceeeccCcCccccCCCC--CCCCcceEEecCCCCceeccccccc-------ccCCccEEEEeccCCCCCcCCCCC
Q 037573          248 LTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITDVNIFKSLFQWGLH-------RLNSLKELIVNGEFPDMISFPQEE  318 (357)
Q Consensus       248 l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~-------~l~~L~~L~l~~~c~~l~~l~~~~  318 (357)
                      +++|++|++++| .+..+|...  .+++|+.|++++ +.++.++...+.       .+++|++|++++  +.+..+|..+
T Consensus       672 ~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~--N~L~~lp~~l  747 (876)
T 4ecn_A          672 GINASTVTLSYN-EIQKFPTELFATGSPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLLTTIDLRF--NKLTSLSDDF  747 (876)
T ss_dssp             CCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCS-CCCSCCCTTSSSCTTSCCTTGGGCCEEECCS--SCCCCCCGGG
T ss_pred             CCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCC-CcCCccChHHhccccccccccCCccEEECCC--CCCccchHHh
Confidence            458999999885 566776542  367899999998 567777665333       233899999998  5788888877


Q ss_pred             C--CCCCcceEecccC
Q 037573          319 I--GSTSLTRLWIRDF  332 (357)
Q Consensus       319 ~--~~~sL~~L~l~~c  332 (357)
                      .  .+++|+.|+++++
T Consensus       748 ~~~~l~~L~~L~Ls~N  763 (876)
T 4ecn_A          748 RATTLPYLSNMDVSYN  763 (876)
T ss_dssp             STTTCTTCCEEECCSS
T ss_pred             hhccCCCcCEEEeCCC
Confidence            6  7889999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=3.1e-16  Score=146.95  Aligned_cols=267  Identities=11%  Similarity=0.094  Sum_probs=178.1

Q ss_pred             CcccceEEeeccCCCCCCC-CccccccchhHHHhhhcccccccchh-hhhh-hccCCccccccccccccCCcccccCCCc
Q 037573           48 STSKAWKLIIRTCCSNFNT-PSLMFNASMRYKLKDSTTRLQEIDME-KEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCR  124 (357)
Q Consensus        48 ~~~~l~~l~l~~c~~~~~~-~~l~~l~~L~~l~~~~~~~l~~i~~~-~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (357)
                      .+++++.|+++++...... ..+..+++|+.+.+.++. +..+... +..+ .++........  ...++ ...++.+++
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~-~~~~~~l~~  142 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND--LSSLP-RGIFHNTPK  142 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTT
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc--cCcCC-HHHhcCCCC
Confidence            3468889988887643332 357778888888777654 4444322 2222 12211111111  11111 122577899


Q ss_pred             ccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccc-cccccc----------cccccccEEEeeCCCCCccc
Q 037573          125 LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELS-SVAEMF----------AIITSFENIMVNGCDNLKCL  193 (357)
Q Consensus       125 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L----------~~l~~L~~L~l~~c~~l~~l  193 (357)
                      |++|+++++......|..++.+++|++|+++++ .+..++... .+|+.|          ...++|+.|+++++ .+..+
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n-~l~~~  220 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVV  220 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS-CCCEE
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCC-eeeec
Confidence            999999988643334556888999999999985 454443221 122222          22567788888775 45666


Q ss_pred             ccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCC
Q 037573          194 PHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYP  271 (357)
Q Consensus       194 p~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~  271 (357)
                      |...  .++|+.|+++++ .+...+. ..++  +|++|+++++.--...|..+..+++|++|+++++ .++.++.. ..+
T Consensus       221 ~~~~--~~~L~~L~l~~n-~l~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l  294 (390)
T 3o6n_A          221 RGPV--NVELTILKLQHN-NLTDTAWLLNYP--GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPI  294 (390)
T ss_dssp             ECCC--CSSCCEEECCSS-CCCCCGGGGGCT--TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCC
T ss_pred             cccc--cccccEEECCCC-CCcccHHHcCCC--CccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCC
Confidence            5433  579999999986 4554432 3344  9999999997643444678899999999999995 67777765 347


Q ss_pred             CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      ++|++|++++ +.++.++.. +..+++|++|++++  +.+..++  ...+++|++|++++.
T Consensus       295 ~~L~~L~L~~-n~l~~~~~~-~~~l~~L~~L~L~~--N~i~~~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          295 PTLKVLDLSH-NHLLHVERN-QPQFDRLENLYLDH--NSIVTLK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             TTCCEEECCS-SCCCCCGGG-HHHHTTCSEEECCS--SCCCCCC--CCTTCCCSEEECCSS
T ss_pred             CCCCEEECCC-CcceecCcc-ccccCcCCEEECCC--CccceeC--chhhccCCEEEcCCC
Confidence            8999999999 578777654 78899999999998  5677776  346789999999873

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.71  E-value=2.4e-16  Score=155.96  Aligned_cols=202  Identities=13%  Similarity=0.051  Sum_probs=92.0

Q ss_pred             ccCCCcccEEeeccCcCcccc--ccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-
Q 037573          119 IQVLCRLKYLELIDCECLVNL--PQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH-  195 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-  195 (357)
                      ++.+++|++|+++++......  +..++.+++|++|+++++.-....|..+..      +++|+.|++++|......|. 
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE------CPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT------CTTCSEEECTTCCEECCTTCC
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC------CccCCeEECCCCcCCCcccch
Confidence            344455555555554321111  334445555555555553211111222223      55566666655432222222 


Q ss_pred             ccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchh-h--HhhhccCCcccceeeccCcCccccCCC--CC
Q 037573          196 ELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEA-L--LNGIHRLTSHQQLTVEQCPGIVAIPEN--DY  270 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-l--~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~  270 (357)
                      .+..+++|+.|++++|.-....+.....+++|++|++++|.-... +  +..+..+++|++|++++| .++.++..  +.
T Consensus       420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~  498 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTS  498 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTT
T ss_pred             hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhcc
Confidence            245556666666665432221221111123666666655442211 1  124555666666666664 34433322  22


Q ss_pred             CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEeccc
Q 037573          271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRD  331 (357)
Q Consensus       271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~  331 (357)
                      +++|+.|++++ +.++...+..+..+++| +|++++  +.+..++.. +..+++|++|++++
T Consensus       499 l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~  556 (606)
T 3t6q_A          499 LKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLAS--NHISIILPSLLPILSQQRTINLRQ  556 (606)
T ss_dssp             CTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCS--SCCCCCCGGGHHHHHTSSEEECTT
T ss_pred             ccCCCEEECCC-CccCcCChhHhCccccc-EEECcC--CcccccCHhhcccCCCCCEEeCCC
Confidence            45666666666 44554444445566666 666665  344444322 22345666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=1.8e-16  Score=146.52  Aligned_cols=243  Identities=19%  Similarity=0.221  Sum_probs=168.6

Q ss_pred             ccceEEeeccCCCCCCCC-ccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCcccEE
Q 037573           50 SKAWKLIIRTCCSNFNTP-SLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYL  128 (357)
Q Consensus        50 ~~l~~l~l~~c~~~~~~~-~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  128 (357)
                      ++++.|+++++......+ .+..+++|+.+.+.++ .+..+.                         +..++.+++|++|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-------------------------~~~~~~l~~L~~L  105 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIE-------------------------EDSFSSLGSLEHL  105 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEEC-------------------------TTTTTTCTTCCEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccC-------------------------HhhcCCCCCCCEE
Confidence            467777777765322222 3556666666655543 222221                         2236778999999


Q ss_pred             eeccCcCccccccc-cCCCCCcCEEeecCCCcchhccc--cccccccccccccccEEEeeCCCCCccc-ccccCCCCCcc
Q 037573          129 ELIDCECLVNLPQA-LHCLSSLTEITVAGCTKLVSFLE--LSSVAEMFAIITSFENIMVNGCDNLKCL-PHELHKLSRLQ  204 (357)
Q Consensus       129 ~l~~~~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~--~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~  204 (357)
                      +++++. +..+|.. ++.+++|++|+++++ .+..+|.  .+..      +++|+.|++++|..+..+ |..+..+++|+
T Consensus       106 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~------l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A          106 DLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSH------LTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             ECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTT------CTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             ECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhcc------CCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            999875 5666654 788999999999985 5667766  3335      889999999987666666 45678899999


Q ss_pred             EEEecCCCCCccc-CCCCCCCCCcceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCC-----CCCCCcceE
Q 037573          205 QIEIRNCPSLVSF-PERGLPSTNLTAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPEN-----DYPTNLTIL  277 (357)
Q Consensus       205 ~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L  277 (357)
                      .|+++++. +..+ +.....+++|++|+++++. ++.+|.. +..+++|++|+++++ .+..++..     .....++.+
T Consensus       178 ~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l  254 (353)
T 2z80_A          178 ELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKF  254 (353)
T ss_dssp             EEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEE
T ss_pred             EEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhcc
Confidence            99999864 4444 3322233489999998865 5677654 445889999999885 55554432     235678888


Q ss_pred             EecCCCCce-----ecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEecccCc
Q 037573          278 KITDVNIFK-----SLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRDFQ  333 (357)
Q Consensus       278 ~l~~c~~l~-----~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~c~  333 (357)
                      +++++ .+.     .++. .+..+++|++|++++  +.+..+|... ..+++|++|++++.+
T Consensus       255 ~L~~~-~l~~~~l~~l~~-~l~~l~~L~~L~Ls~--N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          255 TFRNV-KITDESLFQVMK-LLNQISGLLELEFSR--NQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             EEESC-BCCHHHHHHHHH-HHHTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccc-cccCcchhhhHH-HHhcccCCCEEECCC--CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            88873 344     2333 367899999999998  6888999875 578999999998753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.70  E-value=4e-16  Score=142.97  Aligned_cols=194  Identities=17%  Similarity=0.232  Sum_probs=111.9

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCc---ccc
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLK---CLP  194 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~---~lp  194 (357)
                      ++.+++|++|+++++. +..+|..+.  ++|++|+++++ .+..++.. +..      +++|+.|+++++. +.   ..|
T Consensus        98 ~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~~~  166 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSG------LRNMNCIEMGGNP-LENSGFEP  166 (332)
T ss_dssp             STTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSS------CSSCCEEECCSCC-CBGGGSCT
T ss_pred             hhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCC------CccCCEEECCCCc-cccCCCCc
Confidence            4445555555555543 344444332  45555555552 33334332 123      5566666666543 22   223


Q ss_pred             cccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCC
Q 037573          195 HELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYP  271 (357)
Q Consensus       195 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~  271 (357)
                      ..+..+ +|+.|+++++ .+..+|....+  +|++|+++++. ++.++ ..+..+++|++|+++++ .+..++..  ..+
T Consensus       167 ~~~~~l-~L~~L~l~~n-~l~~l~~~~~~--~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l  240 (332)
T 2ft3_A          167 GAFDGL-KLNYLRISEA-KLTGIPKDLPE--TLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFL  240 (332)
T ss_dssp             TSSCSC-CCSCCBCCSS-BCSSCCSSSCS--SCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGC
T ss_pred             ccccCC-ccCEEECcCC-CCCccCccccC--CCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCC
Confidence            334444 5666666653 45555554333  77777777754 44443 56777788888888774 56555543  336


Q ss_pred             CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCC-------CCCcceEecccCc
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIG-------STSLTRLWIRDFQ  333 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~-------~~sL~~L~l~~c~  333 (357)
                      ++|+.|++++ +.++.++.. +..+++|++|++++  +.+..++...+.       .++|+.|++.+.+
T Consensus       241 ~~L~~L~L~~-N~l~~lp~~-l~~l~~L~~L~l~~--N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          241 PTLRELHLDN-NKLSRVPAG-LPDLKLLQVVYLHT--NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             TTCCEEECCS-SCCCBCCTT-GGGCTTCCEEECCS--SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             CCCCEEECCC-CcCeecChh-hhcCccCCEEECCC--CCCCccChhHccccccccccccccceEeecCc
Confidence            7888888887 567766654 67788888888887  567776644321       3567777777665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=4e-16  Score=149.17  Aligned_cols=249  Identities=20%  Similarity=0.196  Sum_probs=146.6

Q ss_pred             CCCCCcccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhhh--------------ccCCcccccccc
Q 037573           44 PDQPSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLI--------------LKSNSGERSKKV  109 (357)
Q Consensus        44 ~~~~~~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~--------------~~~~~~~~~~~~  109 (357)
                      |.....+.++++.++++.....++.++.+++|+.+.+.++.-.+.++..++.+.              +........   
T Consensus         5 p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~---   81 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL---   81 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS---
T ss_pred             ccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC---
Confidence            434456788888888776633344688999999998887654444444432211              011110000   


Q ss_pred             ccccCCcccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCC
Q 037573          110 GQRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDN  189 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~  189 (357)
                        .+...+.  ..++|++|+++++. +..+|.   .+++|++|+++++ .+..++..         .++|++|++++| .
T Consensus        82 --~l~~lp~--~~~~L~~L~l~~n~-l~~lp~---~~~~L~~L~l~~n-~l~~l~~~---------~~~L~~L~L~~n-~  142 (454)
T 1jl5_A           82 --GLSSLPE--LPPHLESLVASCNS-LTELPE---LPQSLKSLLVDNN-NLKALSDL---------PPLLEYLGVSNN-Q  142 (454)
T ss_dssp             --CCSCCCS--CCTTCSEEECCSSC-CSSCCC---CCTTCCEEECCSS-CCSCCCSC---------CTTCCEEECCSS-C
T ss_pred             --ccccCCC--CcCCCCEEEccCCc-CCcccc---ccCCCcEEECCCC-ccCcccCC---------CCCCCEEECcCC-C
Confidence              0111111  13688888888765 555775   2478888888874 56555542         468999999986 4


Q ss_pred             CcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCC
Q 037573          190 LKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEND  269 (357)
Q Consensus       190 l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~  269 (357)
                      +..+| .++.+++|++|+++++ .++.+|.. .+  +|++|+++++ .++.+| .++.+++|++|+++++ .++.+|.  
T Consensus       143 l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~-~~--~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~--  212 (454)
T 1jl5_A          143 LEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL-PP--SLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPD--  212 (454)
T ss_dssp             CSSCC-CCTTCTTCCEEECCSS-CCSCCCCC-CT--TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCC--
T ss_pred             CCCCc-ccCCCCCCCEEECCCC-cCcccCCC-cc--cccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCC--
Confidence            66788 5889999999999985 66667642 33  8999999886 466776 6888999999999885 5666654  


Q ss_pred             CCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      .+++|++|++++ +.++.++.  +..+++|++|++++  +.+..+|.   .+++|++|+++++
T Consensus       213 ~~~~L~~L~l~~-n~l~~lp~--~~~l~~L~~L~l~~--N~l~~l~~---~~~~L~~L~l~~N  267 (454)
T 1jl5_A          213 LPLSLESIVAGN-NILEELPE--LQNLPFLTTIYADN--NLLKTLPD---LPPSLEALNVRDN  267 (454)
T ss_dssp             CCTTCCEEECCS-SCCSSCCC--CTTCTTCCEEECCS--SCCSSCCS---CCTTCCEEECCSS
T ss_pred             CcCcccEEECcC-CcCCcccc--cCCCCCCCEEECCC--CcCCcccc---cccccCEEECCCC
Confidence            346888888888 45666653  57788888888887  56666665   3466666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.70  E-value=2.3e-16  Score=150.76  Aligned_cols=198  Identities=15%  Similarity=0.217  Sum_probs=127.9

Q ss_pred             ccCCCcccEEeeccCcCcccc-ccccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc-
Q 037573          119 IQVLCRLKYLELIDCECLVNL-PQALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH-  195 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~-  195 (357)
                      ++.+++|++|+++++. +..+ +..+..+++|++|+++++ .+..++... ..      +++|+.|+++++. +..+|. 
T Consensus        95 ~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~N~-l~~~~~~  165 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEY------LSKLRELWLRNNP-IESIPSY  165 (452)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSS------CTTCCEEECCSCC-CCEECTT
T ss_pred             cCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC-cCCccChhhhcc------cCCCCEEECCCCC-cceeCHh
Confidence            5667777778877764 3443 356777777888877774 455565542 24      6777777777753 555554 


Q ss_pred             ccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCC
Q 037573          196 ELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPT  272 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~  272 (357)
                      .+..+++|+.|++++|..+..++...+ .+++|++|+++++. ++.+| .+..+++|++|+++++ .+..++..  ..++
T Consensus       166 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  242 (452)
T 3zyi_A          166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGN-HFPEIRPGSFHGLS  242 (452)
T ss_dssp             TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTS-CCSEECGGGGTTCT
T ss_pred             HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCC-cCcccCcccccCcc
Confidence            456677777777777777777665322 22377777777643 55554 4667777777777774 45544332  2356


Q ss_pred             CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEeccc
Q 037573          273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRD  331 (357)
Q Consensus       273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~  331 (357)
                      +|+.|++++ +.++.+.+..+..+++|++|++++  +.+..+|... ..+++|++|++++
T Consensus       243 ~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          243 SLKKLWVMN-SQVSLIERNAFDGLASLVELNLAH--NNLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             TCCEEECTT-SCCCEECTTTTTTCTTCCEEECCS--SCCSCCCTTSSTTCTTCCEEECCS
T ss_pred             CCCEEEeCC-CcCceECHHHhcCCCCCCEEECCC--CcCCccChHHhccccCCCEEEccC
Confidence            777777777 556656555566777777777776  5666666543 3466777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=3.8e-16  Score=154.48  Aligned_cols=267  Identities=11%  Similarity=0.091  Sum_probs=162.8

Q ss_pred             CcccceEEeeccCCCCCCC-CccccccchhHHHhhhcccccccchh-hhhh-hccCCccccccccccccCCcccccCCCc
Q 037573           48 STSKAWKLIIRTCCSNFNT-PSLMFNASMRYKLKDSTTRLQEIDME-KEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCR  124 (357)
Q Consensus        48 ~~~~l~~l~l~~c~~~~~~-~~l~~l~~L~~l~~~~~~~l~~i~~~-~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (357)
                      .+++++.|++++|...... ..++.+++|+.+.+.++. +..+... +..+ .+..+....+.  ...++ +..++.+++
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~-~~~~~~l~~  148 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND--LSSLP-RGIFHNTPK  148 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTT
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC--CCCCC-HHHhccCCC
Confidence            3568999999988743333 367888888888887654 4444332 2222 11111111111  11111 122567888


Q ss_pred             ccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccc-ccccc----------cccccccEEEeeCCCCCccc
Q 037573          125 LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMF----------AIITSFENIMVNGCDNLKCL  193 (357)
Q Consensus       125 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L----------~~l~~L~~L~l~~c~~l~~l  193 (357)
                      |++|+++++......|..++.+++|++|+++++ .+..++.... +|+.|          ...++|+.|+++++ .+..+
T Consensus       149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n-~l~~~  226 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVV  226 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS-CCCEE
T ss_pred             CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCC-ccccc
Confidence            888888887643334456778888888888874 4444432211 12211          12445555666553 24444


Q ss_pred             ccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCC
Q 037573          194 PHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYP  271 (357)
Q Consensus       194 p~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~  271 (357)
                      |..+  .++|+.|+++++ .+...+. ..++  +|++|+++++.--...|..+..+++|++|+++++ .+..+|.. +.+
T Consensus       227 ~~~~--~~~L~~L~L~~n-~l~~~~~l~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l  300 (597)
T 3oja_B          227 RGPV--NVELTILKLQHN-NLTDTAWLLNYP--GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPI  300 (597)
T ss_dssp             ECSC--CSCCCEEECCSS-CCCCCGGGGGCT--TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCC
T ss_pred             cccc--CCCCCEEECCCC-CCCCChhhccCC--CCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccC
Confidence            4332  356777777765 3333322 3334  8888888886543444667888888999998884 67767655 336


Q ss_pred             CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      ++|+.|++++ +.++.++.. +..+++|++|++++  +.+..++  ...+++|++|++++.
T Consensus       301 ~~L~~L~Ls~-N~l~~i~~~-~~~l~~L~~L~L~~--N~l~~~~--~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          301 PTLKVLDLSH-NHLLHVERN-QPQFDRLENLYLDH--NSIVTLK--LSTHHTLKNLTLSHN  355 (597)
T ss_dssp             TTCCEEECCS-SCCCCCGGG-HHHHTTCSEEECCS--SCCCCCC--CCTTCCCSEEECCSS
T ss_pred             CCCcEEECCC-CCCCccCcc-cccCCCCCEEECCC--CCCCCcC--hhhcCCCCEEEeeCC
Confidence            7899999988 567767654 67888999999988  4566665  335678888888864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=2.7e-16  Score=142.34  Aligned_cols=200  Identities=19%  Similarity=0.128  Sum_probs=135.0

Q ss_pred             ccCCCcccEEeeccCcCcccc---ccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc
Q 037573          119 IQVLCRLKYLELIDCECLVNL---PQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH  195 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~  195 (357)
                      ++.+++|++|+++++. +..+   +..+..+++|++|+++++ .+..+|..+..      +++|+.|+++++ .+..++.
T Consensus        48 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~------l~~L~~L~l~~n-~l~~~~~  118 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG------LEQLEHLDFQHS-NLKQMSE  118 (306)
T ss_dssp             TTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEET------CTTCCEEECTTS-EEESSTT
T ss_pred             hhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCC------CCCCCEEECCCC-ccccccc
Confidence            5667888888888765 3332   455667888888888875 46666665545      788888888875 3555543


Q ss_pred             --ccCCCCCccEEEecCCCCCcccCCC-CCCCCCcceEEeccCCcch-hhHhhhccCCcccceeeccCcCccccCCC--C
Q 037573          196 --ELHKLSRLQQIEIRNCPSLVSFPER-GLPSTNLTAVCVINCEKLE-ALLNGIHRLTSHQQLTVEQCPGIVAIPEN--D  269 (357)
Q Consensus       196 --~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~  269 (357)
                        .+..+++|+.|+++++. +...+.. .-.+++|++|+++++.... .+|..+..+++|++|+++++ .++.++..  .
T Consensus       119 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~  196 (306)
T 2z66_A          119 FSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFN  196 (306)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT
T ss_pred             chhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhc
Confidence              57778888888888753 3333322 1123488888888765322 35677788888888888885 56655433  3


Q ss_pred             CCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCc-CCCCCCCC-CCcceEecccC
Q 037573          270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMIS-FPQEEIGS-TSLTRLWIRDF  332 (357)
Q Consensus       270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~-l~~~~~~~-~sL~~L~l~~c  332 (357)
                      .+++|++|++++ +.++.++...+..+++|++|++++ | .+.. .|..+... ++|++|++++.
T Consensus       197 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N-~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          197 SLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-N-HIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             TCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTT-S-CCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             CCCCCCEEECCC-CccCccChhhccCcccCCEeECCC-C-CCcccCHHHHHhhhccCCEEEccCC
Confidence            367888888888 567766655567788888888888 4 4544 34444333 58888888763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=1.3e-16  Score=157.88  Aligned_cols=262  Identities=14%  Similarity=0.096  Sum_probs=128.8

Q ss_pred             CCcccceEEeeccCCCCCCCCc-cccccchhHHHhhhcccccccch-hhhhh-hccCCccccccccccccCCcccccCCC
Q 037573           47 PSTSKAWKLIIRTCCSNFNTPS-LMFNASMRYKLKDSTTRLQEIDM-EKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLC  123 (357)
Q Consensus        47 ~~~~~l~~l~l~~c~~~~~~~~-l~~l~~L~~l~~~~~~~l~~i~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      ....+++.+.+.++.....++. +..+++|+.+.+.++. +..+.. .+..+ .+..+....+.  ... ..+..++.++
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~  123 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA--IRY-LPPHVFQNVP  123 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC--CCC-CCTTTTTTCT
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc--CCC-CCHHHHcCCC
Confidence            3446778888877653222222 4566777777666543 333322 11111 11111100000  000 0112234455


Q ss_pred             cccEEeeccCcCccccccc-cCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573          124 RLKYLELIDCECLVNLPQA-LHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS  201 (357)
Q Consensus       124 ~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~  201 (357)
                      +|++|+++++. +..+|.. ++.+++|++|+++++ .+..+++ .+..      +++|+.|++++|. +..++  ++.++
T Consensus       124 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~------l~~L~~L~L~~N~-l~~~~--~~~l~  192 (597)
T 3oja_B          124 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQA------TTSLQNLQLSSNR-LTHVD--LSLIP  192 (597)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTT------CTTCCEEECTTSC-CSBCC--GGGCT
T ss_pred             CCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhc------CCcCcEEECcCCC-CCCcC--hhhhh
Confidence            55555555543 3344433 345555555555553 2333322 2223      4555555555532 33332  22233


Q ss_pred             CccEEEecCC------------------CCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCcc
Q 037573          202 RLQQIEIRNC------------------PSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIV  263 (357)
Q Consensus       202 ~L~~L~l~~c------------------~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~  263 (357)
                      +|+.|+++++                  ..+..++....  ++|+.|++++|. ++.. ..+..+++|++|+++++ .+.
T Consensus       193 ~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N-~l~  267 (597)
T 3oja_B          193 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYN-ELE  267 (597)
T ss_dssp             TCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCC
T ss_pred             hhhhhhcccCccccccCCchhheeeccCCcccccccccC--CCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCC-ccC
Confidence            3333333321                  11112221111  256666665543 3333 45677778888888774 444


Q ss_pred             cc-CCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          264 AI-PEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       264 ~l-~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      .+ |.. +.+++|+.|++++ +.++.++.. +..+++|++|++++  +.+..+|..+..+++|++|+++++
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~-~~~l~~L~~L~Ls~--N~l~~i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISN-NRLVALNLY-GQPIPTLKVLDLSH--NHLLHVERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTT-SCCCEEECS-SSCCTTCCEEECCS--SCCCCCGGGHHHHTTCSEEECCSS
T ss_pred             CCCHHHhcCccCCCEEECCC-CCCCCCCcc-cccCCCCcEEECCC--CCCCccCcccccCCCCCEEECCCC
Confidence            44 222 3367788888887 566666543 45678888888887  466677766656777888777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.70  E-value=6.2e-16  Score=147.82  Aligned_cols=196  Identities=20%  Similarity=0.261  Sum_probs=158.8

Q ss_pred             CcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccc-cCC
Q 037573          123 CRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~  199 (357)
                      +++++|+++++. +.. .|..+..+++|++|+++++ .+..++. .+..      +++|+.|+++++ .+..+|.. +..
T Consensus        75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~------l~~L~~L~L~~n-~l~~~~~~~~~~  145 (452)
T 3zyi_A           75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG------LASLNTLELFDN-WLTVIPSGAFEY  145 (452)
T ss_dssp             TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT------CTTCCEEECCSS-CCSBCCTTTSSS
T ss_pred             CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC------cccCCEEECCCC-cCCccChhhhcc
Confidence            689999999986 455 4667899999999999985 5666654 3335      899999999996 47777654 778


Q ss_pred             CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573          200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL  277 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  277 (357)
                      +++|+.|+++++ .+..++...+ .+++|++|++++|+.++.++. .+..+++|++|+++++ .+..+|....+++|+.|
T Consensus       146 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L  223 (452)
T 3zyi_A          146 LSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEEL  223 (452)
T ss_dssp             CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEE
T ss_pred             cCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEE
Confidence            999999999985 5777776322 235999999999998888865 5788999999999995 78888876678999999


Q ss_pred             EecCCCCceecccccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccC
Q 037573          278 KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c  332 (357)
                      ++++ +.++.+.+..+..+++|++|++.+  +.+..+ +..+..+++|++|+++++
T Consensus       224 ~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          224 EMSG-NHFPEIRPGSFHGLSSLKKLWVMN--SQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             ECTT-SCCSEECGGGGTTCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ECcC-CcCcccCcccccCccCCCEEEeCC--CcCceECHHHhcCCCCCCEEECCCC
Confidence            9999 678877777789999999999998  567666 445556899999999864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.69  E-value=5.1e-16  Score=142.30  Aligned_cols=196  Identities=16%  Similarity=0.204  Sum_probs=154.9

Q ss_pred             cccCCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-
Q 037573          118 VIQVLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH-  195 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-  195 (357)
                      .++.+++|++|+++++. +.. .|..++.+++|++|+++++ .+..+|...        .++|++|+++++ .+..+|. 
T Consensus        73 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~--------~~~L~~L~l~~n-~i~~~~~~  141 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL--------PSSLVELRIHDN-RIRKVPKG  141 (332)
T ss_dssp             TTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC--------CTTCCEEECCSS-CCCCCCSG
T ss_pred             HhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCccc--------cccCCEEECCCC-ccCccCHh
Confidence            47789999999999986 455 4778999999999999985 677777754        479999999986 4667765 


Q ss_pred             ccCCCCCccEEEecCCCCCcc--cCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCC
Q 037573          196 ELHKLSRLQQIEIRNCPSLVS--FPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYP  271 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~  271 (357)
                      .+..+++|+.|+++++ .++.  +....+...+|++|+++++. ++.+|..+.  ++|++|+++++ .++.++..  ..+
T Consensus       142 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~~l  216 (332)
T 2ft3_A          142 VFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDLP--ETLNELHLDHN-KIQAIELEDLLRY  216 (332)
T ss_dssp             GGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSS-CCCCCCTTSSTTC
T ss_pred             HhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCC-CCccCcccc--CCCCEEECCCC-cCCccCHHHhcCC
Confidence            4788999999999986 4432  22233332389999998854 677776543  79999999985 67666543  347


Q ss_pred             CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      ++|++|++++ +.++.+++..+..+++|++|++++  +.+..+|..+..+++|++|++++.
T Consensus       217 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~--N~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          217 SKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDN--NKLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             TTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCS--SCCCBCCTTGGGCTTCCEEECCSS
T ss_pred             CCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCC--CcCeecChhhhcCccCCEEECCCC
Confidence            8999999999 678877766688999999999998  688899998878999999999864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.69  E-value=6.3e-16  Score=147.25  Aligned_cols=200  Identities=15%  Similarity=0.257  Sum_probs=156.8

Q ss_pred             ccccCCCcccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccc
Q 037573          117 SVIQVLCRLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLP  194 (357)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp  194 (357)
                      ..+..+++|++|+++++. +..++ ..+..+++|++|+++++ .+..++.. +..      +++|+.|+++++. +..+|
T Consensus        82 ~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~N~-i~~~~  152 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVY------LSKLKELWLRNNP-IESIP  152 (440)
T ss_dssp             TTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCS------CSSCCEEECCSCC-CCEEC
T ss_pred             HHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhc------cccCceeeCCCCc-ccccC
Confidence            347788999999999986 45544 57888999999999985 67777764 335      8899999999864 66665


Q ss_pred             c-ccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CC
Q 037573          195 H-ELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DY  270 (357)
Q Consensus       195 ~-~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~  270 (357)
                      . .+..+++|+.|+++++..+..++...+ .+++|++|++++| .++.+| .+..+++|++|+++++ .+..++..  ..
T Consensus       153 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~  229 (440)
T 3zyj_A          153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQG  229 (440)
T ss_dssp             TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTTTTTT
T ss_pred             HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChhhhcc
Confidence            4 577899999999999888888876332 2348999999886 467776 5788899999999985 67766544  33


Q ss_pred             CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEeccc
Q 037573          271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRD  331 (357)
Q Consensus       271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~  331 (357)
                      +++|+.|++++ +.++.+.+..+..+++|++|++++  +.+..+|... ..+++|++|++++
T Consensus       230 l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          230 LMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH--NNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             CTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT--SCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             CccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC--CCCCccChhHhccccCCCEEEcCC
Confidence            78999999999 678877777788899999999998  6888887654 3578899998885

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=1.9e-16  Score=156.83  Aligned_cols=260  Identities=13%  Similarity=0.015  Sum_probs=173.3

Q ss_pred             cceEEeeccCC-CCCCCCccccccchhHHHhhhcccccccchhhhhh-hccCCccccccccccccCCcccccCCCcccEE
Q 037573           51 KAWKLIIRTCC-SNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLKYL  128 (357)
Q Consensus        51 ~l~~l~l~~c~-~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  128 (357)
                      .+..+.+..+. .....|.+..+++|+.+.+.++. +..++ .+..+ .+.......+.  ...++   .+ .+++|+.|
T Consensus       262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~-~l~~~~~L~~L~l~~n~--l~~lp---~~-~l~~L~~L  333 (606)
T 3vq2_A          262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE-DVPKHFKWQSLSIIRCQ--LKQFP---TL-DLPFLKSL  333 (606)
T ss_dssp             EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC-CCCTTCCCSEEEEESCC--CSSCC---CC-CCSSCCEE
T ss_pred             cHhheeccccccccccccccccCCCCCEEEecCcc-chhhh-hccccccCCEEEccccc--Ccccc---cC-CCCcccee
Confidence            56677764443 33334456677777777666543 33333 11111 11111111111  11111   23 67788888


Q ss_pred             eeccCcCccccccccCCCCCcCEEeecCCCcchhc---cccccccccccccccccEEEeeCCCCCcccccccCCCCCccE
Q 037573          129 ELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSF---LELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQ  205 (357)
Q Consensus       129 ~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~---~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  205 (357)
                      +++++.....+  .++.+++|++|+++++ .+..+   +.....      +++|+.|++++|. +..+|..+..+++|+.
T Consensus       334 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~------~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~  403 (606)
T 3vq2_A          334 TLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDLG------TNSLRHLDLSFNG-AIIMSANFMGLEELQH  403 (606)
T ss_dssp             EEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHHC------CSCCCEEECCSCS-EEEECCCCTTCTTCCE
T ss_pred             eccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhcc------CCcccEeECCCCc-cccchhhccCCCCCCe
Confidence            88877555544  3567888888888875 34433   333334      7899999999864 7778888889999999


Q ss_pred             EEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccc--cCCC-CCCCCcceEEecC
Q 037573          206 IEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVA--IPEN-DYPTNLTILKITD  281 (357)
Q Consensus       206 L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~--l~~~-~~~~~L~~L~l~~  281 (357)
                      |+++++......+. ....+++|++|++++|......|..+..+++|++|++++|. +..  +|.. +.+++|++|++++
T Consensus       404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~  482 (606)
T 3vq2_A          404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSK  482 (606)
T ss_dssp             EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTT
T ss_pred             eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCC
Confidence            99998643333331 22233599999999987666677788999999999999964 443  4543 4578999999999


Q ss_pred             CCCceecccccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccC
Q 037573          282 VNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       282 c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c  332 (357)
                       +.++.+++..+..+++|++|++++ | .+..+ |..+..+++|++|+++++
T Consensus       483 -n~l~~~~~~~~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          483 -CQLEQISWGVFDTLHRLQLLNMSH-N-NLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             -SCCCEECTTTTTTCTTCCEEECCS-S-CCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             -CcCCccChhhhcccccCCEEECCC-C-cCCCcCHHHccCCCcCCEEECCCC
Confidence             567766666688999999999999 5 56555 666667899999999876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=7.6e-16  Score=138.00  Aligned_cols=197  Identities=17%  Similarity=0.238  Sum_probs=135.7

Q ss_pred             CCcccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhc-cccccccccccccccccEEEeeCCCCCccc-ccccC
Q 037573          122 LCRLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSF-LELSSVAEMFAIITSFENIMVNGCDNLKCL-PHELH  198 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~-~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~  198 (357)
                      .++|++|+++++. +..++ ..++.+++|++|+++++ .+..+ +..+..      +++|+.|+++++..+..+ |..+.
T Consensus        31 ~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~l~~n~~l~~~~~~~~~  102 (285)
T 1ozn_A           31 PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTG------LALLEQLDLSDNAQLRSVDPATFH  102 (285)
T ss_dssp             CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT------CTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCC------ccCCCEEeCCCCCCccccCHHHhc
Confidence            4688888888865 45554 45778888888888875 45555 333334      788888888887556666 56677


Q ss_pred             CCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCc
Q 037573          199 KLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNL  274 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L  274 (357)
                      .+++|+.|+++++ .+..++...+ .+++|++|+++++. ++.++. .+..+++|++|+++++ .++.++..  ..+++|
T Consensus       103 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          103 GLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSL  179 (285)
T ss_dssp             TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred             CCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcccc
Confidence            7888888888875 4444543221 23488888887754 555543 4677888888888874 66666654  336788


Q ss_pred             ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEecccC
Q 037573          275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRDF  332 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~c  332 (357)
                      ++|++++ +.++.+.+..+..+++|++|++++  +.+..++.. +..+++|++|++++.
T Consensus       180 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          180 DRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFA--NNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CEEECCS-SCCCEECTTTTTTCTTCCEEECCS--SCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             CEEECCC-CcccccCHhHccCcccccEeeCCC--CcCCcCCHHHcccCcccCEEeccCC
Confidence            8888888 556666555577888888888887  566666643 345678888888753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=8.6e-16  Score=146.97  Aligned_cols=258  Identities=15%  Similarity=0.096  Sum_probs=127.9

Q ss_pred             cccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhh-hccCCccccccccccccCCcccccCCCcccE
Q 037573           49 TSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLKY  127 (357)
Q Consensus        49 ~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  127 (357)
                      +++++.++++++... ..|.++.+++|+.+.+.++. +..++  +..+ .++........     +... .++.+++|++
T Consensus        41 l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-----l~~~-~~~~l~~L~~  110 (457)
T 3bz5_A           41 LATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-----LTNL-DVTPLTKLTY  110 (457)
T ss_dssp             HTTCCEEECCSSCCC-CCTTGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-----CSCC-CCTTCTTCCE
T ss_pred             cCCCCEEEccCCCcc-cChhhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-----Ccee-ecCCCCcCCE
Confidence            457777777776532 23566677777777665542 33332  1111 11111111110     1111 1455666666


Q ss_pred             EeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccc---cccc-------------cccccccEEEeeCCCCCc
Q 037573          128 LELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSV---AEMF-------------AIITSFENIMVNGCDNLK  191 (357)
Q Consensus       128 L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~---L~~L-------------~~l~~L~~L~l~~c~~l~  191 (357)
                      |+++++. +..+|  ++.+++|++|+++++ .+..++  +..   |+.|             ..+++|+.|+++++ .+.
T Consensus       111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~  183 (457)
T 3bz5_A          111 LNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KIT  183 (457)
T ss_dssp             EECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCC
T ss_pred             EECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccc
Confidence            6666653 34443  555666666666553 333332  112   0000             00445555555553 244


Q ss_pred             ccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCC
Q 037573          192 CLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYP  271 (357)
Q Consensus       192 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~  271 (357)
                      .+|  ++.+++|+.|+++++ .+..++.+.++  +|++|+++++. ++.+|  +..+++|++|+++++ .++.++.. .+
T Consensus       184 ~l~--l~~l~~L~~L~l~~N-~l~~~~l~~l~--~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N-~l~~~~~~-~l  253 (457)
T 3bz5_A          184 ELD--VSQNKLLNRLNCDTN-NITKLDLNQNI--QLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN-PLTELDVS-TL  253 (457)
T ss_dssp             CCC--CTTCTTCCEEECCSS-CCSCCCCTTCT--TCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCCCT-TC
T ss_pred             eec--cccCCCCCEEECcCC-cCCeeccccCC--CCCEEECcCCc-ccccC--ccccCCCCEEEeeCC-cCCCcCHH-HC
Confidence            444  445555555555543 34444333333  66666665533 44454  555666666666653 44444432 22


Q ss_pred             CCcceE----------EecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccccc
Q 037573          272 TNLTIL----------KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISS  340 (357)
Q Consensus       272 ~~L~~L----------~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~~  340 (357)
                      ++|+.|          ++++|..+..++   ...+++|+.|++++ |+.++.+|.   ..++|+.|+++++++|+.+..
T Consensus       254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~-n~~l~~l~~---~~~~L~~L~l~~~~~L~~L~L  325 (457)
T 3bz5_A          254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTH-NTQLYLLDC---QAAGITELDLSQNPKLVYLYL  325 (457)
T ss_dssp             TTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTT-CTTCCEEEC---TTCCCSCCCCTTCTTCCEEEC
T ss_pred             CCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCC-Ccccceecc---CCCcceEechhhcccCCEEEC
Confidence            333333          333322222222   24567777777777 777777765   346777777777888877754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.68  E-value=1e-15  Score=145.83  Aligned_cols=196  Identities=14%  Similarity=0.200  Sum_probs=158.8

Q ss_pred             CcccEEeeccCcCcccc-ccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCccccc-ccCC
Q 037573          123 CRLKYLELIDCECLVNL-PQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~  199 (357)
                      ++++.|+++++. +..+ +..+..+++|++|+++++ .+..++.. +..      +++|+.|+++++ .+..+|. .+..
T Consensus        64 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~------l~~L~~L~L~~n-~l~~~~~~~~~~  134 (440)
T 3zyj_A           64 TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG------LANLNTLELFDN-RLTTIPNGAFVY  134 (440)
T ss_dssp             TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTT------CSSCCEEECCSS-CCSSCCTTTSCS
T ss_pred             CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccC------CccCCEEECCCC-cCCeeCHhHhhc
Confidence            789999999986 5554 467899999999999995 56666543 335      899999999996 5777765 5888


Q ss_pred             CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573          200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL  277 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  277 (357)
                      +++|+.|+++++ .+..++...+ .+++|++|++++++.+..++. .+..+++|++|+++++ .++.+|....+++|++|
T Consensus       135 l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L  212 (440)
T 3zyj_A          135 LSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDEL  212 (440)
T ss_dssp             CSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEE
T ss_pred             cccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEE
Confidence            999999999985 5677765322 235999999999888888765 5788999999999995 78888876678999999


Q ss_pred             EecCCCCceecccccccccCCccEEEEeccCCCCCcCC-CCCCCCCCcceEecccC
Q 037573          278 KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFP-QEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~-~~~~~~~sL~~L~l~~c  332 (357)
                      ++++ +.++.+.+..+..+++|++|++.+  +.+..++ ..+..+++|++|+++++
T Consensus       213 ~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          213 DLSG-NHLSAIRPGSFQGLMHLQKLWMIQ--SQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             ECTT-SCCCEECTTTTTTCTTCCEEECTT--CCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             ECCC-CccCccChhhhccCccCCEEECCC--CceeEEChhhhcCCCCCCEEECCCC
Confidence            9999 678877777789999999999998  6777764 44456899999998763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.68  E-value=1e-15  Score=151.56  Aligned_cols=201  Identities=14%  Similarity=0.162  Sum_probs=134.1

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhc-cccccccccccccccccEEEeeCCCCCcccccc-
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSF-LELSSVAEMFAIITSFENIMVNGCDNLKCLPHE-  196 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~-~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-  196 (357)
                      ++.+++|++|+++++. +..+|..+..+++|++|+++++. +..+ |..+..      +++|+.|++++|.....+|.. 
T Consensus       274 ~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~------l~~L~~L~l~~n~~~~~~~~~~  345 (606)
T 3t6q_A          274 FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANK-FENLCQISASN------FPSLTHLSIKGNTKRLELGTGC  345 (606)
T ss_dssp             TTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGG------CTTCSEEECCSCSSCCBCCSST
T ss_pred             hccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCC-cCcCchhhhhc------cCcCCEEECCCCCcccccchhh
Confidence            6677888888888774 56777777788888888888753 4443 333334      788888888887654455544 


Q ss_pred             cCCCCCccEEEecCCCCCccc---CCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCcccc-CCC--CC
Q 037573          197 LHKLSRLQQIEIRNCPSLVSF---PERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAI-PEN--DY  270 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l---~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~--~~  270 (357)
                      +..+++|+.|+++++ .+..+   +.....+++|++|+++++.-....|..+..+++|++|+++++ .+... +..  ..
T Consensus       346 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~  423 (606)
T 3t6q_A          346 LENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQN  423 (606)
T ss_dssp             TTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC-CEECCTTCCTTTT
T ss_pred             hhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC-cCCCcccchhhhC
Confidence            777888888888875 33333   222222348888888886544444567778888888888875 34433 222  33


Q ss_pred             CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCc--CC--CCCCCCCCcceEecccC
Q 037573          271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMIS--FP--QEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~--l~--~~~~~~~sL~~L~l~~c  332 (357)
                      +++|++|++++ +.++..++..+..+++|++|++++ | .+..  ++  ..+..+++|++|++++|
T Consensus       424 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~-n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          424 LHLLKVLNLSH-SLLDISSEQLFDGLPALQHLNLQG-N-HFPKGNIQKTNSLQTLGRLEILVLSFC  486 (606)
T ss_dssp             CTTCCEEECTT-CCCBTTCTTTTTTCTTCCEEECTT-C-BCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred             cccCCEEECCC-CccCCcCHHHHhCCCCCCEEECCC-C-CCCccccccchhhccCCCccEEECCCC
Confidence            67888888888 456655455567788888888887 4 4433  22  23445788888888876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=1e-15  Score=146.48  Aligned_cols=190  Identities=15%  Similarity=0.102  Sum_probs=124.4

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      ++.+++|++|+++++..++.+  .++.+++|++|+++++ .+..+|  +..      +++|+.|+++++ .+..++  ++
T Consensus       144 l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~------l~~L~~L~l~~N-~l~~~~--l~  209 (457)
T 3bz5_A          144 VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--VSQ------NKLLNRLNCDTN-NITKLD--LN  209 (457)
T ss_dssp             CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC--CTT------CTTCCEEECCSS-CCSCCC--CT
T ss_pred             cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec--ccc------CCCCCEEECcCC-cCCeec--cc
Confidence            344455555555555444444  2445566666666653 344444  222      889999999986 466663  88


Q ss_pred             CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHh-hhccCC-------cccceeeccCcCccccCCCCC
Q 037573          199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLN-GIHRLT-------SHQQLTVEQCPGIVAIPENDY  270 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~-------~L~~L~l~~c~~l~~l~~~~~  270 (357)
                      .+++|+.|+++++ .+..+|...++  +|++|+++++. ++.+|. .+..+.       +|+.|++++|..+..+|. +.
T Consensus       210 ~l~~L~~L~Ls~N-~l~~ip~~~l~--~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~  284 (457)
T 3bz5_A          210 QNIQLTFLDCSSN-KLTEIDVTPLT--QLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EG  284 (457)
T ss_dssp             TCTTCSEEECCSS-CCSCCCCTTCT--TCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TT
T ss_pred             cCCCCCEEECcCC-cccccCccccC--CCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cc
Confidence            8999999999985 67778865565  99999999864 555542 222222       456677777766666664 34


Q ss_pred             CCCcceEEecCCCCceecccc-------cccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          271 PTNLTILKITDVNIFKSLFQW-------GLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       271 ~~~L~~L~l~~c~~l~~~~~~-------~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      +++|+.|++++|..+..++..       .+..+++|++|++++  ++++.++  +..+++|+.|++++
T Consensus       285 l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~--N~l~~l~--l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          285 CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN--TELTELD--VSHNTKLKSLSCVN  348 (457)
T ss_dssp             CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT--CCCSCCC--CTTCTTCSEEECCS
T ss_pred             cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC--Ccccccc--cccCCcCcEEECCC
Confidence            689999999998766654321       244567788888886  5666664  44677788887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.67  E-value=2.5e-15  Score=154.44  Aligned_cols=271  Identities=16%  Similarity=0.123  Sum_probs=138.4

Q ss_pred             CcccceEEeeccCCCC-CCCCccccccchhHHHhhhcccccccc-hhhhhh-hccCCccccccccccccCCcccccCCCc
Q 037573           48 STSKAWKLIIRTCCSN-FNTPSLMFNASMRYKLKDSTTRLQEID-MEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCR  124 (357)
Q Consensus        48 ~~~~l~~l~l~~c~~~-~~~~~l~~l~~L~~l~~~~~~~l~~i~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (357)
                      ..+++++|+++.+... .....+..+++|+.+.+.++.....+. ..+..+ .++.+....+.  .. ...+..++.+++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~--l~-~~~p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK--IY-FLHPDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC--CC-EECTTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc--Cc-ccCHhHccCCcc
Confidence            4568888888887633 334467788888888887765554442 222221 11111111110  00 011345677778


Q ss_pred             ccEEeeccCcCccccccc--cCCCCCcCEEeecCCCcchhcc--ccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573          125 LKYLELIDCECLVNLPQA--LHCLSSLTEITVAGCTKLVSFL--ELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL  200 (357)
Q Consensus       125 L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~i~~c~~l~~~~--~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l  200 (357)
                      |++|++++|.....+|..  ++.+++|++|+++++. +..++  ..+.+      +++|+.|+++++..-...|..+..+
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~------L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGK------LNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGT------CSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhh------CCCCCEEECCCCcCCeeCHHHcccc
Confidence            888888777544434443  6777788888887753 33332  22334      5566666666543211112222221


Q ss_pred             --CC------------------------------ccEEEecCCCCCcccCC-----------------------------
Q 037573          201 --SR------------------------------LQQIEIRNCPSLVSFPE-----------------------------  219 (357)
Q Consensus       201 --~~------------------------------L~~L~l~~c~~l~~l~~-----------------------------  219 (357)
                        ++                              |+.|+++++.--...+.                             
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              22                              45555554311100000                             


Q ss_pred             ---------CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceec
Q 037573          220 ---------RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSL  288 (357)
Q Consensus       220 ---------~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~  288 (357)
                               ..+..++|++|+++++.-....+..+..+++|+.|+++++ .+..++..  ..+++|++|++++ +.++.+
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~  329 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSY-NLLGEL  329 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEES-CCCSCC
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCC-CCCCcc
Confidence                     0010135555555554322222344556666666666663 44444332  2256677777766 455555


Q ss_pred             ccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEecccC
Q 037573          289 FQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRDF  332 (357)
Q Consensus       289 ~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~c  332 (357)
                      .+..+..+++|++|++++  +.+..++.. +..+++|++|+++++
T Consensus       330 ~~~~~~~l~~L~~L~L~~--N~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          330 YSSNFYGLPKVAYIDLQK--NHIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CSCSCSSCTTCCEEECCS--CCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             CHHHhcCCCCCCEEECCC--CCCCccChhhhcCCCCCCEEECCCC
Confidence            444456667777777776  355555432 334667777776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.67  E-value=2.3e-15  Score=135.37  Aligned_cols=195  Identities=19%  Similarity=0.217  Sum_probs=134.3

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCccccccc
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      ++.+++++.++++++ .++.+|..+  .++++.|+++++ .+..++. .+..      +++|+.|+++++ .+..+|.. 
T Consensus         6 ~~~l~~l~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~N-~l~~~~~~~~~~------l~~L~~L~L~~n-~l~~~~~~-   73 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLTALPPDL--PKDTTILHLSEN-LLYTFSLATLMP------YTRLTQLNLDRA-ELTKLQVD-   73 (290)
T ss_dssp             EECSTTCCEEECTTS-CCSSCCSCC--CTTCCEEECTTS-CCSEEEGGGGTT------CTTCCEEECTTS-CCCEEECC-
T ss_pred             ccccCCccEEECCCC-CCCcCCCCC--CCCCCEEEcCCC-cCCccCHHHhhc------CCCCCEEECCCC-ccCcccCC-
Confidence            456777888888775 366777654  267888888874 4544433 2334      778888888775 46666653 


Q ss_pred             CCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCCC--CCCCc
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNL  274 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L  274 (357)
                      +.+++|+.|+++++ .+..+|.....+++|++|+++++ .++.+| ..+..+++|++|+++++ .+..++...  .+++|
T Consensus        74 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           74 GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred             CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCC
Confidence            66788888888864 56666653333347888888774 355554 45777888888888774 666666543  35788


Q ss_pred             ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      +.|++++ +.++.++...+..+++|++|++++  +.+..+|...+..++|++|++.+
T Consensus       151 ~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~--N~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          151 EKLSLAN-NNLTELPAGLLNGLENLDTLLLQE--NSLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             CEEECTT-SCCSCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCCCSEEECCS
T ss_pred             CEEECCC-CcCCccCHHHhcCcCCCCEEECCC--CcCCccChhhcccccCCeEEeCC
Confidence            8888887 667777666566788888888887  67788887777777888887774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.67  E-value=1.1e-15  Score=149.53  Aligned_cols=269  Identities=15%  Similarity=0.129  Sum_probs=153.9

Q ss_pred             cccceEEeeccCCCCCC-CCccccccchhHHHhhhcccccccc-hhhhhh-hccCCccccccccccccCCcccccCCCcc
Q 037573           49 TSKAWKLIIRTCCSNFN-TPSLMFNASMRYKLKDSTTRLQEID-MEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRL  125 (357)
Q Consensus        49 ~~~l~~l~l~~c~~~~~-~~~l~~l~~L~~l~~~~~~~l~~i~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  125 (357)
                      ++++++++++++..... ...+..+++|+.+.+.++. +..+. ..+..+ .++........  ... ..+..++.+++|
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~--l~~-~~~~~~~~l~~L  100 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH--LSS-LSSSWFGPLSSL  100 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC--CCS-CCHHHHTTCTTC
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCc--cCc-cCHHHhccCCCC
Confidence            35788888888763322 3356778888888777653 33333 222222 11111111110  000 112237788999


Q ss_pred             cEEeeccCcCcc-ccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccccCCC---
Q 037573          126 KYLELIDCECLV-NLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL---  200 (357)
Q Consensus       126 ~~L~l~~~~~l~-~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l---  200 (357)
                      ++|+++++.... ..|..++.+++|++|+++++..+..+|. .+..      +++|+.|+++++......|..++.+   
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~l~~l~~L  174 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG------LTSLNELEIKALSLRNYQSQSLKSIRDI  174 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT------CCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc------ccccCeeeccCCcccccChhhhhccccC
Confidence            999999886332 3456788899999999998765666664 3335      8899999999876444455555544   


Q ss_pred             ---------------------CCccEEEecCCCCCcccCC------CCCC------------------------------
Q 037573          201 ---------------------SRLQQIEIRNCPSLVSFPE------RGLP------------------------------  223 (357)
Q Consensus       201 ---------------------~~L~~L~l~~c~~l~~l~~------~~~~------------------------------  223 (357)
                                           ++|+.|+++++ .+..++.      ...+                              
T Consensus       175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          175 HHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             EEEEEECSBSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             ceEecccCcccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence                                 45555555543 2222110      0000                              


Q ss_pred             -------------------------------------------------------CCCcceEEeccCCcchhhHhhh-cc
Q 037573          224 -------------------------------------------------------STNLTAVCVINCEKLEALLNGI-HR  247 (357)
Q Consensus       224 -------------------------------------------------------~~~L~~L~l~~c~~l~~l~~~~-~~  247 (357)
                                                                             .++|++|+++++. ++.+|..+ +.
T Consensus       254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~  332 (549)
T 2z81_A          254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQH  332 (549)
T ss_dssp             CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHH
T ss_pred             cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhc
Confidence                                                                   0122333333221 23344443 45


Q ss_pred             CCcccceeeccCcCccccC----CCCCCCCcceEEecCCCCceeccc--ccccccCCccEEEEeccCCCCCcCCCCCCCC
Q 037573          248 LTSHQQLTVEQCPGIVAIP----ENDYPTNLTILKITDVNIFKSLFQ--WGLHRLNSLKELIVNGEFPDMISFPQEEIGS  321 (357)
Q Consensus       248 l~~L~~L~l~~c~~l~~l~----~~~~~~~L~~L~l~~c~~l~~~~~--~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~  321 (357)
                      +++|++|+++++.-...+|    ..+.+++|++|++++ +.++.++.  ..+..+++|++|++++  +.+..+|..+..+
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~lp~~~~~~  409 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISR--NTFHPMPDSCQWP  409 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT-SCCCCHHHHHHHGGGCTTCCEEECTT--CCCCCCCSCCCCC
T ss_pred             CccccEEEccCCccccccccchhhhhccccCcEEEccC-CcccccccchhhhhcCCCCCEEECCC--CCCccCChhhccc
Confidence            7777888887754332222    123457788888887 55665542  2356778888888887  4777777766666


Q ss_pred             CCcceEecccC
Q 037573          322 TSLTRLWIRDF  332 (357)
Q Consensus       322 ~sL~~L~l~~c  332 (357)
                      ++|++|+++++
T Consensus       410 ~~L~~L~Ls~N  420 (549)
T 2z81_A          410 EKMRFLNLSST  420 (549)
T ss_dssp             TTCCEEECTTS
T ss_pred             ccccEEECCCC
Confidence            77777776654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.66  E-value=2e-15  Score=144.90  Aligned_cols=81  Identities=21%  Similarity=0.214  Sum_probs=40.7

Q ss_pred             hccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCc
Q 037573          245 IHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSL  324 (357)
Q Consensus       245 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL  324 (357)
                      +..+++|++|+++++ .+..++....+++|+.|++++ +.++.+++  +..+++|++|++++ | .+..++. ...+++|
T Consensus       261 ~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L~L~~-n-~l~~~~~-~~~l~~L  333 (466)
T 1o6v_A          261 LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNE-NQLEDISP--ISNLKNLTYLTLYF-N-NISDISP-VSSLTKL  333 (466)
T ss_dssp             GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCS-SCCSCCGG--GGGCTTCSEEECCS-S-CCSCCGG-GGGCTTC
T ss_pred             hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCC-CcccCchh--hcCCCCCCEEECcC-C-cCCCchh-hccCccC
Confidence            444455555555443 333333222345566666655 34444433  45566666666666 3 4444433 2345666


Q ss_pred             ceEecccC
Q 037573          325 TRLWIRDF  332 (357)
Q Consensus       325 ~~L~l~~c  332 (357)
                      ++|+++++
T Consensus       334 ~~L~l~~n  341 (466)
T 1o6v_A          334 QRLFFYNN  341 (466)
T ss_dssp             CEEECCSS
T ss_pred             CEeECCCC
Confidence            66666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.65  E-value=2.6e-15  Score=150.61  Aligned_cols=201  Identities=19%  Similarity=0.196  Sum_probs=131.9

Q ss_pred             cccCCCcccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCC--Cccc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDN--LKCL  193 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~--l~~l  193 (357)
                      .+..+++|+.|+++++...+.+| ..+..+++|++|+++++. +..++. .+..      +++|+.|+++++..  +..+
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~  472 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFAL------VPSLQRLMLRRVALKNVDSS  472 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTT------CTTCCEEECTTSCCBCTTCS
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhc------CcccccchhccccccccccC
Confidence            45566777777777765434444 356667777777777654 333322 2223      67788888877542  2456


Q ss_pred             ccccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh---------hhccCCcccceeeccCcCcc
Q 037573          194 PHELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN---------GIHRLTSHQQLTVEQCPGIV  263 (357)
Q Consensus       194 p~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~---------~~~~l~~L~~L~l~~c~~l~  263 (357)
                      |..+..+++|+.|+++++ .+..++...+ .+++|++|+++++. ++.++.         .+..+++|++|+++++ .++
T Consensus       473 p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~  549 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFD  549 (680)
T ss_dssp             SCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCC
T ss_pred             CcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCC
Confidence            777778888888888874 5566665322 23478888887754 454421         2567788888888774 666


Q ss_pred             ccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC--CCCCcceEeccc
Q 037573          264 AIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI--GSTSLTRLWIRD  331 (357)
Q Consensus       264 ~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~--~~~sL~~L~l~~  331 (357)
                      .+|..  ..+++|+.|++++ +.++.+++..+..+++|++|++++  +.+..++....  .+++|++|++++
T Consensus       550 ~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          550 EIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK--NLITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT--SCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             CCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC--CcCCccChhHhcccccccCEEEccC
Confidence            77754  3367888888877 677777776667788888888887  57777665432  357788888775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=2.5e-15  Score=145.99  Aligned_cols=129  Identities=18%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             CCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcch--hhHhhhccCCcccceeeccCcCccc-cCCC--CCCC
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLE--ALLNGIHRLTSHQQLTVEQCPGIVA-IPEN--DYPT  272 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~--~~~~  272 (357)
                      ..+++|++|+++++.-...+|.....+++|++|++++|.--.  .+|..+..+++|++|+++++ .+.. +|..  ..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCc
Confidence            345666666666643222233322223377777776654221  44556777777777777774 3444 5543  2245


Q ss_pred             CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      +|++|++++ +.++...+..+  .++|++|++++  +.+..+|.....+++|++|+++++
T Consensus       400 ~L~~L~Ls~-N~l~~~~~~~l--~~~L~~L~Ls~--N~l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          400 SLLSLNMSS-NILTDTIFRCL--PPRIKVLDLHS--NKIKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             TCCEEECCS-SCCCGGGGGSC--CTTCCEEECCS--SCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cCCEEECcC-CCCCcchhhhh--cccCCEEECCC--CcccccchhhhcCCCCCEEECCCC
Confidence            666666666 33332111111  14666666665  355566655555666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.65  E-value=8.7e-16  Score=139.00  Aligned_cols=223  Identities=16%  Similarity=0.113  Sum_probs=159.1

Q ss_pred             cccceEEeeccCCCCCCCC-ccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCcccE
Q 037573           49 TSKAWKLIIRTCCSNFNTP-SLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKY  127 (357)
Q Consensus        49 ~~~l~~l~l~~c~~~~~~~-~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  127 (357)
                      .++++.|+++++......+ .+..+++|+.+.+.++. +..+...                       +..+..+++|++
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----------------------~~~~~~~~~L~~   82 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCC-----------------------SQSDFGTTSLKY   82 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEE-----------------------EHHHHSCSCCCE
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCc-----------------------ccccccccccCE
Confidence            4688999998876432222 25677777777665542 2222100                       122445799999


Q ss_pred             EeeccCcCccccccccCCCCCcCEEeecCCCcchhccc--cccccccccccccccEEEeeCCCCCcccccccCCCCCccE
Q 037573          128 LELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE--LSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQ  205 (357)
Q Consensus       128 L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~--~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  205 (357)
                      |+++++. +..+|..+..+++|++|+++++ .+..++.  .+..      +++|+.|++++|......|..+..+++|+.
T Consensus        83 L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           83 LDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLS------LRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             EECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTT------CTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             EECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhh------ccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            9999985 6678888889999999999985 5665554  3334      889999999997544445666888999999


Q ss_pred             EEecCCCCCc-ccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecC
Q 037573          206 IEIRNCPSLV-SFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITD  281 (357)
Q Consensus       206 L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~  281 (357)
                      |+++++.-.. .+|.....+++|++|+++++. ++.+ |..+..+++|++|+++++ .+..++..  ..+++|+.|++++
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  232 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL  232 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTT
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCC
Confidence            9999864322 245433334599999999865 5554 667889999999999985 56666543  3368999999999


Q ss_pred             CCCceeccccccccc-CCccEEEEec
Q 037573          282 VNIFKSLFQWGLHRL-NSLKELIVNG  306 (357)
Q Consensus       282 c~~l~~~~~~~l~~l-~~L~~L~l~~  306 (357)
                       +.++...+..+..+ ++|++|++++
T Consensus       233 -N~l~~~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          233 -NHIMTSKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             -SCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred             -CCCcccCHHHHHhhhccCCEEEccC
Confidence             56776655557777 4999999998

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=4.2e-15  Score=145.32  Aligned_cols=273  Identities=16%  Similarity=0.114  Sum_probs=156.3

Q ss_pred             CCcccceEEeeccCCCCCCC-CccccccchhHHHhhhcccccccchh-hhhh-hccCCccccccccccccCCcccccCCC
Q 037573           47 PSTSKAWKLIIRTCCSNFNT-PSLMFNASMRYKLKDSTTRLQEIDME-KEQL-ILKSNSGERSKKVGQRLSTTSVIQVLC  123 (357)
Q Consensus        47 ~~~~~l~~l~l~~c~~~~~~-~~l~~l~~L~~l~~~~~~~l~~i~~~-~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      ..+++++.|++++|...... ..+..+++|+.+.++++. +..+... +..+ .++........  ......+..++.++
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~  123 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP--YQTLGVTSLFPNLT  123 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC--CSSSCSSCSCTTCT
T ss_pred             hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCc--ccccchhhhhhccC
Confidence            45678999999998744333 357888888888887754 4444333 3322 12222111111  11112244578889


Q ss_pred             cccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhccccccc---cccccc---------------cccccEEEe
Q 037573          124 RLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSFLELSSV---AEMFAI---------------ITSFENIMV  184 (357)
Q Consensus       124 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~---L~~L~~---------------l~~L~~L~l  184 (357)
                      +|++|+++++...+.+| ..++.+++|++|+++++.--...|..+..   |+.|.+               +++|+.|++
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL  203 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred             CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence            99999999887677776 46888899999999886433334444433   333321               678999999


Q ss_pred             eCCCCCcccc---c-----------------------------ccCCC--------------------------------
Q 037573          185 NGCDNLKCLP---H-----------------------------ELHKL--------------------------------  200 (357)
Q Consensus       185 ~~c~~l~~lp---~-----------------------------~l~~l--------------------------------  200 (357)
                      +++. +..++   .                             .+..+                                
T Consensus       204 ~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  282 (549)
T 2z81_A          204 RDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK  282 (549)
T ss_dssp             ESCB-CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred             cCCc-cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence            8864 22210   0                             00111                                


Q ss_pred             ---------------------------CCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh---hhccCC
Q 037573          201 ---------------------------SRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN---GIHRLT  249 (357)
Q Consensus       201 ---------------------------~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~---~~~~l~  249 (357)
                                                 ++|+.|+++++ .+..+|...+ .+++|++|+++++.-...+|.   .++.++
T Consensus       283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~  361 (549)
T 2z81_A          283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP  361 (549)
T ss_dssp             CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred             cccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence                                       12333333332 2333333211 123788888887664444432   356777


Q ss_pred             cccceeeccCcCccccCC----CCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcc
Q 037573          250 SHQQLTVEQCPGIVAIPE----NDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLT  325 (357)
Q Consensus       250 ~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~  325 (357)
                      +|++|++++| .++.++.    ...+++|++|++++ +.++.++.. +..+++|++|++++  +.+..+|...  +++|+
T Consensus       362 ~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~~~~L~~L~Ls~--N~l~~l~~~~--~~~L~  434 (549)
T 2z81_A          362 SLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISR-NTFHPMPDS-CQWPEKMRFLNLSS--TGIRVVKTCI--PQTLE  434 (549)
T ss_dssp             TCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTT-CCCCCCCSC-CCCCTTCCEEECTT--SCCSCCCTTS--CTTCS
T ss_pred             cCcEEEccCC-cccccccchhhhhcCCCCCEEECCC-CCCccCChh-hcccccccEEECCC--CCcccccchh--cCCce
Confidence            7888888774 4554432    12356777788877 456665543 56667777777776  4566665433  34555


Q ss_pred             eEeccc
Q 037573          326 RLWIRD  331 (357)
Q Consensus       326 ~L~l~~  331 (357)
                      +|++++
T Consensus       435 ~L~Ls~  440 (549)
T 2z81_A          435 VLDVSN  440 (549)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.64  E-value=7.6e-15  Score=140.77  Aligned_cols=167  Identities=19%  Similarity=0.298  Sum_probs=77.1

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      ++.+++|+.|+++++. +..++. +..+++|++|+++++. +..+++ ...      +++|+.|++++|. +..++ .+.
T Consensus       173 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-~~~------l~~L~~L~l~~n~-l~~~~-~l~  240 (466)
T 1o6v_A          173 LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQ-ISDITP-LGI------LTNLDELSLNGNQ-LKDIG-TLA  240 (466)
T ss_dssp             GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSC-CCCCGG-GGG------CTTCCEEECCSSC-CCCCG-GGG
T ss_pred             hccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCc-cccccc-ccc------cCCCCEEECCCCC-cccch-hhh
Confidence            5666777777777664 444443 5666777777777643 333332 112      4555555555542 33332 244


Q ss_pred             CCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573          199 KLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL  277 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  277 (357)
                      .+++|+.|++++|. +..++. ..++  +|++|++++|. +..++. +..+++|++|++++| .+..++..+.+++|+.|
T Consensus       241 ~l~~L~~L~l~~n~-l~~~~~~~~l~--~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L  314 (466)
T 1o6v_A          241 SLTNLTDLDLANNQ-ISNLAPLSGLT--KLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYL  314 (466)
T ss_dssp             GCTTCSEEECCSSC-CCCCGGGTTCT--TCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEE
T ss_pred             cCCCCCEEECCCCc-cccchhhhcCC--CCCEEECCCCc-cCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEE
Confidence            45555555555432 222221 2222  55555554432 333322 444455555555443 23333322223445555


Q ss_pred             EecCCCCceecccccccccCCccEEEEec
Q 037573          278 KITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      ++++ +.++..++  +..+++|++|++++
T Consensus       315 ~L~~-n~l~~~~~--~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          315 TLYF-NNISDISP--VSSLTKLQRLFFYN  340 (466)
T ss_dssp             ECCS-SCCSCCGG--GGGCTTCCEEECCS
T ss_pred             ECcC-CcCCCchh--hccCccCCEeECCC
Confidence            5544 23333222  23444444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=1.5e-15  Score=137.99  Aligned_cols=198  Identities=13%  Similarity=0.148  Sum_probs=145.2

Q ss_pred             CCCcccEEeeccCcCcccccccc--CCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc-ccc
Q 037573          121 VLCRLKYLELIDCECLVNLPQAL--HCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP-HEL  197 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l  197 (357)
                      .+++|++|+++++..-+.+|..+  +.+++|++|+++++ .+..+|..+..+... .+++|++|+++++. +..++ ..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~-~~~~L~~L~L~~N~-l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQW-LKPGLKVLSIAQAH-SLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTT-CCTTCCEEEEESCS-CCCCCTTTC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHh-hcCCCcEEEeeCCC-CccchHHHh
Confidence            58999999999987555688766  88999999999985 566666544330000 02899999999975 55555 788


Q ss_pred             CCCCCccEEEecCCCCCcc--cC----CCCCCCCCcceEEeccCCcch---hhHh-hhccCCcccceeeccCcCccccC-
Q 037573          198 HKLSRLQQIEIRNCPSLVS--FP----ERGLPSTNLTAVCVINCEKLE---ALLN-GIHRLTSHQQLTVEQCPGIVAIP-  266 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~--l~----~~~~~~~~L~~L~l~~c~~l~---~l~~-~~~~l~~L~~L~l~~c~~l~~l~-  266 (357)
                      +.+++|+.|+++++.-...  ++    ...++  +|++|+++++. ++   .++. .+..+++|++|+++++ .+...+ 
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~--~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~  245 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFP--TLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN-SLRDAAG  245 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT--TCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCC--CCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC-cCCcccc
Confidence            9999999999998754332  11    13444  99999999865 55   3333 3457899999999995 566543 


Q ss_pred             CC--CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          267 EN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       267 ~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      ..  ..+++|++|++++ +.++.++.. +.  ++|++|++++  +.++.+|. +..+++|++|++++-
T Consensus       246 ~~~~~~l~~L~~L~Ls~-N~l~~ip~~-~~--~~L~~L~Ls~--N~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          246 APSCDWPSQLNSLNLSF-TGLKQVPKG-LP--AKLSVLDLSY--NRLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CSCCCCCTTCCEEECTT-SCCSSCCSS-CC--SEEEEEECCS--SCCCSCCC-TTTSCEEEEEECTTC
T ss_pred             hhhhhhcCCCCEEECCC-CccChhhhh-cc--CCceEEECCC--CCCCCChh-HhhCCCCCEEeccCC
Confidence            22  3368999999999 678877664 33  8999999998  78888876 546777777777653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.64  E-value=3.2e-15  Score=145.24  Aligned_cols=149  Identities=18%  Similarity=0.194  Sum_probs=116.7

Q ss_pred             cccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCccc---CC--CCCCCCCcceEEeccCCcchhhHhh-hccCC
Q 037573          176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSF---PE--RGLPSTNLTAVCVINCEKLEALLNG-IHRLT  249 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l---~~--~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~  249 (357)
                      +++|+.|++++|.....+|..++.+++|+.|+++++ .+..+   |.  ..++  +|++|+++++.-...+|.. +..++
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~--~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMK--SLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCT--TCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCC--CCCEEECCCCcCCcccccchhccCc
Confidence            788999999997654557888999999999999986 45533   22  4455  9999999986643337764 77889


Q ss_pred             cccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEe
Q 037573          250 SHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLW  328 (357)
Q Consensus       250 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~  328 (357)
                      +|++|++++|.-...+|. ..+++|+.|++++ +.++.++.+ +..+++|++|++++  +.+..+|.. +..+++|++|+
T Consensus       400 ~L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~-N~l~~ip~~-~~~l~~L~~L~L~~--N~l~~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFR-CLPPRIKVLDLHS-NKIKSIPKQ-VVKLEALQELNVAS--NQLKSVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             TCCEEECCSSCCCGGGGG-SCCTTCCEEECCS-SCCCCCCGG-GGGCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCEEECcCCCCCcchhh-hhcccCCEEECCC-Ccccccchh-hhcCCCCCEEECCC--CcCCccCHHHhccCCcccEEE
Confidence            999999999643344443 3347999999999 678878765 56999999999998  588899986 55688999999


Q ss_pred             cccC
Q 037573          329 IRDF  332 (357)
Q Consensus       329 l~~c  332 (357)
                      +++.
T Consensus       475 l~~N  478 (520)
T 2z7x_B          475 LHTN  478 (520)
T ss_dssp             CCSS
T ss_pred             CcCC
Confidence            9864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.63  E-value=1.4e-14  Score=142.13  Aligned_cols=127  Identities=13%  Similarity=0.134  Sum_probs=77.1

Q ss_pred             CCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcch---hhHhhhccCCcccceeeccCcCccc-cCCC--CCC
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLE---ALLNGIHRLTSHQQLTVEQCPGIVA-IPEN--DYP  271 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~---~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~--~~~  271 (357)
                      ..+++|++|+++++.-...+|.....+++|++|+++++. ++   .+|..+..+++|++|+++++ .+.. +|..  ..+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCc
Confidence            456677777777653322233322223478888887754 44   34456777888888888774 4444 5544  225


Q ss_pred             CCcceEEecCCCCceeccccccccc-CCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRL-NSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l-~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      ++|+.|++++ +.++...+   ..+ ++|++|++++  +.++.+|...+.+++|++|+++++
T Consensus       428 ~~L~~L~l~~-n~l~~~~~---~~l~~~L~~L~L~~--N~l~~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          428 ESILVLNLSS-NMLTGSVF---RCLPPKVKVLDLHN--NRIMSIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             TTCCEEECCS-SCCCGGGG---SSCCTTCSEEECCS--SCCCCCCTTTTSSCCCSEEECCSS
T ss_pred             ccCCEEECCC-CCCCcchh---hhhcCcCCEEECCC--CcCcccChhhcCCCCCCEEECCCC
Confidence            6777777777 44442221   222 5777777776  477777776666777777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=3.1e-15  Score=144.25  Aligned_cols=196  Identities=11%  Similarity=0.071  Sum_probs=153.1

Q ss_pred             ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc
Q 037573          117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~  196 (357)
                      ..++.+++|++|+++++. +...+. ++.+++|++|+++++ .+..+|.          .++|+.|++++|. +..+|. 
T Consensus        52 ~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----------~~~L~~L~L~~N~-l~~~~~-  116 (487)
T 3oja_A           52 ADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----------GPSIETLHAANNN-ISRVSC-  116 (487)
T ss_dssp             GGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----------CTTCCEEECCSSC-CCCEEE-
T ss_pred             HHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----------CCCcCEEECcCCc-CCCCCc-
Confidence            347788999999999986 454444 889999999999985 5666664          6899999999964 666654 


Q ss_pred             cCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhc-cCCcccceeeccCcCccccCCCCCCCCc
Q 037573          197 LHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIH-RLTSHQQLTVEQCPGIVAIPENDYPTNL  274 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~L  274 (357)
                       ..+++|+.|+++++ .+..++. ....+++|++|+++++.--...|..+. .+++|++|+++++ .+..++....+++|
T Consensus       117 -~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L  193 (487)
T 3oja_A          117 -SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKL  193 (487)
T ss_dssp             -CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTC
T ss_pred             -cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccccccCCCC
Confidence             34789999999986 4554433 222234999999998654344555664 7899999999995 67777776678999


Q ss_pred             ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcc
Q 037573          275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQN  334 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~  334 (357)
                      +.|++++ +.++.+++. +..+++|+.|++++  +.+..+|..+..+++|+.|++++++-
T Consensus       194 ~~L~Ls~-N~l~~~~~~-~~~l~~L~~L~Ls~--N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          194 KTLDLSS-NKLAFMGPE-FQSAAGVTWISLRN--NKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CEEECCS-SCCCEECGG-GGGGTTCSEEECTT--SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             CEEECCC-CCCCCCCHh-HcCCCCccEEEecC--CcCcccchhhccCCCCCEEEcCCCCC
Confidence            9999999 778877765 78999999999998  78889998887889999999987643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.63  E-value=3.2e-15  Score=136.14  Aligned_cols=193  Identities=12%  Similarity=0.109  Sum_probs=150.1

Q ss_pred             cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      .+..+++|++|+++++. +...+. +..+++|++|+++++ .+..++.          .++|+.|+++++ .+..++.. 
T Consensus        53 ~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----------~~~L~~L~l~~n-~l~~~~~~-  117 (317)
T 3o53_A           53 DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----------GPSIETLHAANN-NISRVSCS-  117 (317)
T ss_dssp             HHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEEE----------CTTCCEEECCSS-CCSEEEEC-
T ss_pred             HhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-ccccccC----------CCCcCEEECCCC-ccCCcCcc-
Confidence            46778999999999886 455554 888999999999985 5666653          689999999986 46666543 


Q ss_pred             CCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-Hhhh-ccCCcccceeeccCcCccccCCCCCCCCc
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGI-HRLTSHQQLTVEQCPGIVAIPENDYPTNL  274 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~L  274 (357)
                       .+++|+.|+++++ .+..++...+ .+++|++|+++++. ++.+ +..+ ..+++|++|+++++ .++.++....+++|
T Consensus       118 -~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L  193 (317)
T 3o53_A          118 -RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKL  193 (317)
T ss_dssp             -CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTC
T ss_pred             -ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC-cCcccccccccccC
Confidence             4789999999985 5555544221 23499999998865 4443 4444 47899999999995 68778776668999


Q ss_pred             ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573          275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ  333 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~  333 (357)
                      ++|++++ +.++.+++. +..+++|++|++++  +.+..+|..+..+++|++|++++++
T Consensus       194 ~~L~Ls~-N~l~~l~~~-~~~l~~L~~L~L~~--N~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          194 KTLDLSS-NKLAFMGPE-FQSAAGVTWISLRN--NKLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CEEECCS-SCCCEECGG-GGGGTTCSEEECTT--SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred             CEEECCC-CcCCcchhh-hcccCcccEEECcC--CcccchhhHhhcCCCCCEEEccCCC
Confidence            9999999 678877665 78899999999998  6888999888788999999998653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.63  E-value=9e-15  Score=150.27  Aligned_cols=275  Identities=11%  Similarity=0.044  Sum_probs=176.8

Q ss_pred             CCcccceEEeeccCCCCCC--CCccccccchhHHHhhhccccccc-chhhhhh-hccCCccccccccccccCCcccccCC
Q 037573           47 PSTSKAWKLIIRTCCSNFN--TPSLMFNASMRYKLKDSTTRLQEI-DMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVL  122 (357)
Q Consensus        47 ~~~~~l~~l~l~~c~~~~~--~~~l~~l~~L~~l~~~~~~~l~~i-~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l  122 (357)
                      ..+++++.|++++|.....  ...+..+++|+.+.+.++. +..+ +..+..+ .+..+....+.. ....+....++.+
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~L  122 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGL-SDAVLKDGYFRNL  122 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCC-SSCCSTTCCCSSC
T ss_pred             cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCC-CcccccCcccccc
Confidence            5667899999999853333  3457888999988887764 3333 3333322 122222111110 1111222347889


Q ss_pred             CcccEEeeccCcCcccc-ccccCCCCCcCEEeecCCCcchhcccccc-----ccccccc---------------cc----
Q 037573          123 CRLKYLELIDCECLVNL-PQALHCLSSLTEITVAGCTKLVSFLELSS-----VAEMFAI---------------IT----  177 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~~-----~L~~L~~---------------l~----  177 (357)
                      ++|++|+++++...... +..++.+++|++|+++++.--...+..+.     +|+.|.+               ++    
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence            99999999998643332 34688999999999998532222222211     2222222               22    


Q ss_pred             --cccEEEeeCCCCCcccccccC------------------------------------C--CCCccEEEecCCCCCccc
Q 037573          178 --SFENIMVNGCDNLKCLPHELH------------------------------------K--LSRLQQIEIRNCPSLVSF  217 (357)
Q Consensus       178 --~L~~L~l~~c~~l~~lp~~l~------------------------------------~--l~~L~~L~l~~c~~l~~l  217 (357)
                        +|+.|+++++.....+|..+.                                    .  .++|+.|+++++ .+..+
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~  281 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSL  281 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEE
T ss_pred             cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-ccccc
Confidence              288999988742222221111                                    1  267999999985 44444


Q ss_pred             CCCC-CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceeccccccc
Q 037573          218 PERG-LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLH  294 (357)
Q Consensus       218 ~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~  294 (357)
                      +... ..+++|+.|+++++.--...|..+..+++|++|+++++ .+..++..  ..+++|+.|++++ +.++.+++..+.
T Consensus       282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~  359 (844)
T 3j0a_A          282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQK-NHIAIIQDQTFK  359 (844)
T ss_dssp             CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCS-CCCCCCCSSCSC
T ss_pred             ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCC-CCCCccChhhhc
Confidence            4322 22459999999986643344567899999999999995 56655333  3478999999999 678877776688


Q ss_pred             ccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          295 RLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       295 ~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      .+++|++|++++  +.+..++.    +++|+.|+++++
T Consensus       360 ~l~~L~~L~Ls~--N~l~~i~~----~~~L~~L~l~~N  391 (844)
T 3j0a_A          360 FLEKLQTLDLRD--NALTTIHF----IPSIPDIFLSGN  391 (844)
T ss_dssp             SCCCCCEEEEET--CCSCCCSS----CCSCSEEEEESC
T ss_pred             CCCCCCEEECCC--CCCCcccC----CCCcchhccCCC
Confidence            899999999998  67777664    678999988765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.63  E-value=2e-14  Score=144.24  Aligned_cols=198  Identities=16%  Similarity=0.126  Sum_probs=134.5

Q ss_pred             cccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573          124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR  202 (357)
Q Consensus       124 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  202 (357)
                      +|+.|+++++......|..+..+++|++|+++++.-...+|. .+..      +++|+.|++++|......+..+..+++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~~~~  455 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG------LENIFEIYLSYNKYLQLTRNSFALVPS  455 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT------CTTCCEEECCSCSEEECCTTTTTTCTT
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC------cccccEEecCCCCcceeChhhhhcCcc
Confidence            455555555443222345566777777777777543333442 2223      778888888876533333456667888


Q ss_pred             ccEEEecCCCC--CcccCCCCCCCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC----------C
Q 037573          203 LQQIEIRNCPS--LVSFPERGLPSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN----------D  269 (357)
Q Consensus       203 L~~L~l~~c~~--l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~----------~  269 (357)
                      |+.|+++++..  +..+|.....+++|++|+++++. ++.++. .+..+++|++|+++++ .++.++..          .
T Consensus       456 L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~  533 (680)
T 1ziw_A          456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLK  533 (680)
T ss_dssp             CCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTT
T ss_pred             cccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhc
Confidence            88888887532  23344333334589999998855 566654 5788999999999984 56654321          2


Q ss_pred             CCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEecccC
Q 037573          270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRDF  332 (357)
Q Consensus       270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~c  332 (357)
                      .+++|+.|++++ +.++.++...+..+++|++|++++  +.+..+|... ..+++|++|+++++
T Consensus       534 ~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~--N~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          534 GLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL--NNLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCCCCEEECCC-CCCCCCCHHHcccccCcceeECCC--CCCCcCCHhHhCCCCCCCEEECCCC
Confidence            368999999998 678888776688999999999987  7899998765 36789999999864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=4.6e-15  Score=134.56  Aligned_cols=186  Identities=15%  Similarity=0.249  Sum_probs=85.4

Q ss_pred             CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573          122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS  201 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~  201 (357)
                      +++|++|+++++. +..++ .+..+++|++|+++++ .+..++. +..      +++|+.|+++++. +..+| .+..++
T Consensus        40 l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~------l~~L~~L~L~~n~-l~~~~-~~~~l~  107 (308)
T 1h6u_A           40 LDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKN------LTKITELELSGNP-LKNVS-AIAGLQ  107 (308)
T ss_dssp             HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTT------CCSCCEEECCSCC-CSCCG-GGTTCT
T ss_pred             cCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCC-cCCCChh-Hcc------CCCCCEEEccCCc-CCCch-hhcCCC
Confidence            4555555555542 34444 2445555555555553 3333333 222      5555555555532 44443 344555


Q ss_pred             CccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEec
Q 037573          202 RLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKIT  280 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~  280 (357)
                      +|+.|+++++ .+..++. ..++  +|++|+++++. ++.++. +..+++|++|++++| .+..++....+++|+.|+++
T Consensus       108 ~L~~L~l~~n-~l~~~~~l~~l~--~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~  181 (308)
T 1h6u_A          108 SIKTLDLTST-QITDVTPLAGLS--NLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKAD  181 (308)
T ss_dssp             TCCEEECTTS-CCCCCGGGTTCT--TCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECC
T ss_pred             CCCEEECCCC-CCCCchhhcCCC--CCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECC
Confidence            5555555543 2333332 2222  55555555432 333332 445555555555553 34433332234455555555


Q ss_pred             CCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          281 DVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       281 ~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      + +.++.+++  +..+++|++|++++  +.+..++. +..+++|++|++++
T Consensus       182 ~-n~l~~~~~--l~~l~~L~~L~L~~--N~l~~~~~-l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          182 D-NKISDISP--LASLPNLIEVHLKN--NQISDVSP-LANTSNLFIVTLTN  226 (308)
T ss_dssp             S-SCCCCCGG--GGGCTTCCEEECTT--SCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             C-CccCcChh--hcCCCCCCEEEccC--CccCcccc-ccCCCCCCEEEccC
Confidence            5 33443332  34555555555554  34444442 22444555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=2.7e-15  Score=130.95  Aligned_cols=178  Identities=17%  Similarity=0.181  Sum_probs=140.2

Q ss_pred             cccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH  195 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~  195 (357)
                      .++.+++|++|+++++..++.++. .+..+++|++|++++|..+..++... ..      +++|+.|+++++. +..+|.
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~------l~~L~~L~l~~n~-l~~lp~  122 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE------LPLLKFLGIFNTG-LKMFPD  122 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC------CTTCCEEEEEEEC-CCSCCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC------CCCCCEEeCCCCC-Cccccc
Confidence            367789999999999865777765 68899999999999877888887643 35      8899999999964 677887


Q ss_pred             ccCCCCCcc---EEEecCCCCCcccCCCCC-CCCCcc-eEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCC
Q 037573          196 ELHKLSRLQ---QIEIRNCPSLVSFPERGL-PSTNLT-AVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDY  270 (357)
Q Consensus       196 ~l~~l~~L~---~L~l~~c~~l~~l~~~~~-~~~~L~-~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  270 (357)
                       +..+++|+   .|+++++..+..++...+ .+++|+ +|+++++. ++.+|......++|++|+++++..++.++...+
T Consensus       123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~  200 (239)
T 2xwt_C          123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF  200 (239)
T ss_dssp             -CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTT
T ss_pred             -cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHh
Confidence             88888888   999999768888876433 234899 99998854 667776544458999999999656888876533


Q ss_pred             --C-CCcceEEecCCCCceecccccccccCCccEEEEeccCC
Q 037573          271 --P-TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFP  309 (357)
Q Consensus       271 --~-~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~  309 (357)
                        + ++|+.|++++ +.++.++..   .+++|+.|++.+ +.
T Consensus       201 ~~l~~~L~~L~l~~-N~l~~l~~~---~~~~L~~L~l~~-~~  237 (239)
T 2xwt_C          201 GGVYSGPSLLDVSQ-TSVTALPSK---GLEHLKELIARN-TW  237 (239)
T ss_dssp             TTCSBCCSEEECTT-CCCCCCCCT---TCTTCSEEECTT-C-
T ss_pred             hccccCCcEEECCC-CccccCChh---HhccCceeeccC-cc
Confidence              5 8999999999 778877654   688999999987 54

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.61  E-value=2.2e-14  Score=131.20  Aligned_cols=204  Identities=16%  Similarity=0.182  Sum_probs=154.5

Q ss_pred             cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc-cc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP-HE  196 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~  196 (357)
                      .++.+++|++|+++++..-...|..++.+++|++|+++++ .+..+|...        .++|+.|+++++. +..++ ..
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~--------~~~L~~L~l~~n~-l~~~~~~~  140 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--------PKTLQELRVHENE-ITKVRKSV  140 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC--------CTTCCEEECCSSC-CCBBCHHH
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhh--------cccccEEECCCCc-ccccCHhH
Confidence            4788999999999988643334778889999999999984 577777654        5789999999864 55554 45


Q ss_pred             cCCCCCccEEEecCCCCCc--ccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCC
Q 037573          197 LHKLSRLQQIEIRNCPSLV--SFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPT  272 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~  272 (357)
                      +..+++|+.|+++++..-.  ..+.....+++|++|+++++. ++.+|..+.  ++|++|+++++ .++.++..  ..++
T Consensus       141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~  216 (330)
T 1xku_A          141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGN-KITKVDAASLKGLN  216 (330)
T ss_dssp             HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTS-CCCEECTGGGTTCT
T ss_pred             hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCC-cCCccCHHHhcCCC
Confidence            7889999999999864321  122211123499999998854 677766543  88999999985 56666433  3468


Q ss_pred             CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573          273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      +|++|++++ +.++.+++..+..+++|++|++++  +.+..+|..+..+++|++|+++++ .++.++
T Consensus       217 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~  279 (330)
T 1xku_A          217 NLAKLGLSF-NSISAVDNGSLANTPHLRELHLNN--NKLVKVPGGLADHKYIQVVYLHNN-NISAIG  279 (330)
T ss_dssp             TCCEEECCS-SCCCEECTTTGGGSTTCCEEECCS--SCCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred             CCCEEECCC-CcCceeChhhccCCCCCCEEECCC--CcCccCChhhccCCCcCEEECCCC-cCCccC
Confidence            999999999 667777665688899999999998  588899988878899999999876 466654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.61  E-value=1.4e-14  Score=129.04  Aligned_cols=200  Identities=19%  Similarity=0.259  Sum_probs=145.8

Q ss_pred             CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccc-cccCC
Q 037573          123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLP-HELHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~  199 (357)
                      ++|++|+++++. +..++. .+..+++|++|+++++ .+..++.. +..      +++|+.|+++++. +..++ ..+..
T Consensus        28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~~~~~~~~   98 (276)
T 2z62_A           28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQS------LSHLSTLILTGNP-IQSLALGAFSG   98 (276)
T ss_dssp             TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTT------CTTCCEEECTTCC-CCEECTTTTTT
T ss_pred             CCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccC------CcCCCEEECCCCc-cCccChhhhcC
Confidence            579999999875 566554 6888999999999986 56666553 335      8899999999864 55554 56888


Q ss_pred             CCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchh--hHhhhccCCcccceeeccCcCccccCCCCC--CCCc
Q 037573          200 LSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEA--LLNGIHRLTSHQQLTVEQCPGIVAIPENDY--PTNL  274 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L  274 (357)
                      +++|+.|+++++ .+..++. ....+++|++|+++++. ++.  +|..+..+++|++|+++++ .++.++...+  +.+|
T Consensus        99 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A           99 LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             CTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTC
T ss_pred             CccccEEECCCC-CccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhc
Confidence            999999999875 4555544 22223489999998865 444  6778899999999999885 5666654322  3344


Q ss_pred             c----eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEecc------cCcccccc
Q 037573          275 T----ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIR------DFQNLEYI  338 (357)
Q Consensus       275 ~----~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~------~c~~L~~l  338 (357)
                      +    +|++++ +.++.+++. .....+|++|++++  +.+..+|... ...++|++|+++      +|+.++.+
T Consensus       176 ~~l~l~L~ls~-n~l~~~~~~-~~~~~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l  246 (276)
T 2z62_A          176 PLLNLSLDLSL-NPMNFIQPG-AFKEIRLKELALDT--NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  246 (276)
T ss_dssp             TTCCEEEECCS-SCCCEECTT-SSCSCCEEEEECCS--SCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred             cccceeeecCC-CcccccCcc-ccCCCcccEEECCC--CceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence            4    889988 677777655 33445899999998  5688887654 458899999998      57777655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.61  E-value=1.2e-14  Score=142.75  Aligned_cols=108  Identities=14%  Similarity=0.094  Sum_probs=72.1

Q ss_pred             CCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCC----CCCCCCcceEEecCCCCcee-cccccccccCCc
Q 037573          225 TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPE----NDYPTNLTILKITDVNIFKS-LFQWGLHRLNSL  299 (357)
Q Consensus       225 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~c~~l~~-~~~~~l~~l~~L  299 (357)
                      ++|++|+++++.--..+|..+..+++|++|+++++ .++.++.    .+.+++|+.|++++ +.++. ++...+..+++|
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL-NSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT-SCCBSCCSSCCCCCCTTC
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC-CcCCCccChhhhcCcccC
Confidence            37888888776544446677788888888888874 5665432    13467888888888 55664 665556778888


Q ss_pred             cEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccc
Q 037573          300 KELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYI  338 (357)
Q Consensus       300 ~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l  338 (357)
                      ++|++++ |.--..+|..+  +++|++|+++++ .++.+
T Consensus       431 ~~L~l~~-n~l~~~~~~~l--~~~L~~L~L~~N-~l~~i  465 (562)
T 3a79_B          431 LVLNLSS-NMLTGSVFRCL--PPKVKVLDLHNN-RIMSI  465 (562)
T ss_dssp             CEEECCS-SCCCGGGGSSC--CTTCSEEECCSS-CCCCC
T ss_pred             CEEECCC-CCCCcchhhhh--cCcCCEEECCCC-cCccc
Confidence            8888887 44334445433  368888888765 34443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=5.6e-15  Score=144.95  Aligned_cols=198  Identities=19%  Similarity=0.159  Sum_probs=148.3

Q ss_pred             cCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhc---cccccccccccccccccEEEeeCCCCCcccccc
Q 037573          120 QVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSF---LELSSVAEMFAIITSFENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       120 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~---~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~  196 (357)
                      ..+++|+.|.++++.....++.  ..+++|++|+++++. +...   +.....      +++|+.|++++|. +..+|..
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~~~~~~------~~~L~~L~l~~n~-l~~~~~~  391 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSFKGCCSQSDFG------TTSLKYLDLSFNG-VITMSSN  391 (570)
T ss_dssp             CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBEEEEEEHHHHT------CSCCCEEECCSCS-EEEEEEE
T ss_pred             ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCccccccccccc------cCccCEEECCCCc-ccccccc
Confidence            4678899999998875444443  678999999999853 4433   333334      8899999999964 6677777


Q ss_pred             cCCCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCc-cccCCC-CCCC
Q 037573          197 LHKLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGI-VAIPEN-DYPT  272 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~-~~~~  272 (357)
                      +..+++|+.|+++++. +...+.  ....+++|++|++++|......|..+..+++|++|++++|.-. ..+|.. ..++
T Consensus       392 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             EETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence            8899999999999864 433322  1122349999999998765666778899999999999997533 246644 4478


Q ss_pred             CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEeccc
Q 037573          273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRD  331 (357)
Q Consensus       273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~  331 (357)
                      +|++|++++ +.++.+.+..+..+++|++|++++  +.+..++.. +..+++|++|++++
T Consensus       471 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          471 NLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMAS--NQLKSVPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             TCCEEECTT-SCCCEECTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCC-CccccCChhhhhcccCCCEEeCCC--CcCCCCCHHHhhcccCCcEEEecC
Confidence            999999999 567766555688999999999998  477777643 45688999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.61  E-value=3.3e-14  Score=126.37  Aligned_cols=149  Identities=20%  Similarity=0.300  Sum_probs=66.9

Q ss_pred             cccccEEEeeCCCCCccccccc-CCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhH-hhhccCCccc
Q 037573          176 ITSFENIMVNGCDNLKCLPHEL-HKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALL-NGIHRLTSHQ  252 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~  252 (357)
                      +++|++|+++++ .+..+|..+ ..+++|+.|+++++ .+..++...+ .+++|++|+++++. ++.++ ..+..+++|+
T Consensus        60 l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~  136 (270)
T 2o6q_A           60 LTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLT  136 (270)
T ss_dssp             CTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCC
Confidence            455555555543 234444332 34555555555542 3334433211 12255555554432 33332 2344555555


Q ss_pred             ceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEec
Q 037573          253 QLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWI  329 (357)
Q Consensus       253 ~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l  329 (357)
                      +|+++++ .+..++..  ..+++|++|++++ +.++.+++..+..+++|++|++++  +.+..+|.. +..+++|++|++
T Consensus       137 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          137 YLSLGYN-ELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDN--NQLKRVPEGAFDSLEKLKMLQL  212 (270)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEEC
T ss_pred             EEECCCC-cCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCC--CcCCcCCHHHhccccCCCEEEe
Confidence            5555552 34444432  1244555555555 344444443344555555555554  344444433 223445555555


Q ss_pred             cc
Q 037573          330 RD  331 (357)
Q Consensus       330 ~~  331 (357)
                      .+
T Consensus       213 ~~  214 (270)
T 2o6q_A          213 QE  214 (270)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=1.5e-14  Score=133.49  Aligned_cols=198  Identities=14%  Similarity=0.202  Sum_probs=87.2

Q ss_pred             ccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc-
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH-  195 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~-  195 (357)
                      |..+++|++|+++++...+.+|. .+..+++|.++.+.++..+..+++.. ..      +++|+.|+++++ .+..+|. 
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~------l~~L~~L~l~~n-~l~~~~~~  122 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN------LPNLQYLLISNT-GIKHLPDV  122 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC------CTTCCEEEEEEE-CCSSCCCC
T ss_pred             HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh------cccccccccccc-ccccCCch
Confidence            34444444455444443333332 23344444444333334444443322 12      445555555543 2333332 


Q ss_pred             ccCCCCCccEEEecCCCCCcccCCCCCCC--CCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCC--CC
Q 037573          196 ELHKLSRLQQIEIRNCPSLVSFPERGLPS--TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEND--YP  271 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~  271 (357)
                      ......++..+++.++..+..++...+..  ..++.|++++ +.++.++.......+|+++++.+++.++.+|...  .+
T Consensus       123 ~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l  201 (350)
T 4ay9_X          123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA  201 (350)
T ss_dssp             TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred             hhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccC
Confidence            12223334444444444444444322110  1344555544 2344454444444455555555555555555432  24


Q ss_pred             CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573          272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR  330 (357)
Q Consensus       272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~  330 (357)
                      ++|+.|++++ +.++.++..   .+.+|++|.+.+ +++++.+|.- ..+++|+.+++.
T Consensus       202 ~~L~~LdLs~-N~l~~lp~~---~~~~L~~L~~l~-~~~l~~lP~l-~~l~~L~~l~l~  254 (350)
T 4ay9_X          202 SGPVILDISR-TRIHSLPSY---GLENLKKLRARS-TYNLKKLPTL-EKLVALMEASLT  254 (350)
T ss_dssp             ECCSEEECTT-SCCCCCCSS---SCTTCCEEECTT-CTTCCCCCCT-TTCCSCCEEECS
T ss_pred             cccchhhcCC-CCcCccChh---hhccchHhhhcc-CCCcCcCCCc-hhCcChhhCcCC
Confidence            4555555555 445544432   244455555555 5555555532 234555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.60  E-value=4.8e-14  Score=134.71  Aligned_cols=177  Identities=25%  Similarity=0.265  Sum_probs=93.7

Q ss_pred             CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573          123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR  202 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  202 (357)
                      .+|++|+++++. +..+| .++.+++|++|+++++ .+..+|..         .++|+.|++++| .+..+|. ++.+++
T Consensus       173 ~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~---------~~~L~~L~l~~n-~l~~lp~-~~~l~~  238 (454)
T 1jl5_A          173 PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDL---------PLSLESIVAGNN-ILEELPE-LQNLPF  238 (454)
T ss_dssp             TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCC---------CTTCCEEECCSS-CCSSCCC-CTTCTT
T ss_pred             ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCC---------cCcccEEECcCC-cCCcccc-cCCCCC
Confidence            366666666653 44455 3666666666666664 34444432         346666666665 3445653 666666


Q ss_pred             ccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--------------
Q 037573          203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--------------  268 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--------------  268 (357)
                      |+.|+++++ .+..+|. ..  ++|++|+++++. ++.+|..   +++|++|+++++ .+..++..              
T Consensus       239 L~~L~l~~N-~l~~l~~-~~--~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N-~l~~l~~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          239 LTTIYADNN-LLKTLPD-LP--PSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN-IFSGLSELPPNLYYLNASSNEI  309 (454)
T ss_dssp             CCEEECCSS-CCSSCCS-CC--TTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSEESCCCTTCCEEECCSSCC
T ss_pred             CCEEECCCC-cCCcccc-cc--cccCEEECCCCc-ccccCcc---cCcCCEEECcCC-ccCcccCcCCcCCEEECcCCcC
Confidence            666666653 4444443 12  256666665533 3444321   244555555442 23333210              


Q ss_pred             ----CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          269 ----DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       269 ----~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                          ..+++|+.|++++ +.++.++.    .+++|++|++++  +.+..+|.   .+++|++|+++++
T Consensus       310 ~~i~~~~~~L~~L~Ls~-N~l~~lp~----~~~~L~~L~L~~--N~l~~lp~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          310 RSLCDLPPSLEELNVSN-NKLIELPA----LPPRLERLIASF--NHLAEVPE---LPQNLKQLHVEYN  367 (454)
T ss_dssp             SEECCCCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCS--SCCSCCCC---CCTTCCEEECCSS
T ss_pred             CcccCCcCcCCEEECCC-Cccccccc----cCCcCCEEECCC--Cccccccc---hhhhccEEECCCC
Confidence                1234566666665 44544432    246677777766  45666665   3567777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.59  E-value=2.7e-14  Score=127.84  Aligned_cols=177  Identities=19%  Similarity=0.240  Sum_probs=138.9

Q ss_pred             cccCCCcccEEeeccCcCcccc-ccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCccc-c
Q 037573          118 VIQVLCRLKYLELIDCECLVNL-PQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCL-P  194 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p  194 (357)
                      .+..+++|++|+++++. +..+ |..+..+++|++|+++++..+..++. .+..      +++|+.|+++++. +..+ |
T Consensus        51 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~  122 (285)
T 1ozn_A           51 SFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG------LGRLHTLHLDRCG-LQELGP  122 (285)
T ss_dssp             TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT------CTTCCEEECTTSC-CCCCCT
T ss_pred             HcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC------CcCCCEEECCCCc-CCEECH
Confidence            36778999999999985 5554 67788999999999999765776643 3445      8999999999975 4445 6


Q ss_pred             cccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CC
Q 037573          195 HELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DY  270 (357)
Q Consensus       195 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~  270 (357)
                      ..+..+++|+.|+++++ .+..++...+ .+++|++|+++++ .++.++. .+..+++|++|+++++ .+..++..  ..
T Consensus       123 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~  199 (285)
T 1ozn_A          123 GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRD  199 (285)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred             hHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCC-cccccCHhHccC
Confidence            66888999999999985 5666665322 2359999999886 4666665 4888999999999995 56665333  34


Q ss_pred             CCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573          271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      +++|+.|++++ +.++.+++..+..+++|++|++++
T Consensus       200 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          200 LGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             CTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             cccccEeeCCC-CcCCcCCHHHcccCcccCEEeccC
Confidence            78999999999 678877766678899999999998

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.59  E-value=8.7e-15  Score=135.21  Aligned_cols=177  Identities=16%  Similarity=0.170  Sum_probs=104.6

Q ss_pred             CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccc-cCC
Q 037573          123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~  199 (357)
                      ++|++|+++++. ++.++. .+..+++|++|+++++ .+..++. .+..      +++|++|+++++ .+..+|.. ++.
T Consensus        52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~Ls~n-~l~~~~~~~~~~  122 (353)
T 2z80_A           52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS------LGSLEHLDLSYN-YLSNLSSSWFKP  122 (353)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT------CTTCCEEECCSS-CCSSCCHHHHTT
T ss_pred             ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCC------CCCCCEEECCCC-cCCcCCHhHhCC
Confidence            467777777764 455544 5667777777777764 4544433 2334      667777777764 35556554 666


Q ss_pred             CCCccEEEecCCCCCcccCC-CC-CCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCcccc-CCC-CCCCCc
Q 037573          200 LSRLQQIEIRNCPSLVSFPE-RG-LPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAI-PEN-DYPTNL  274 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~-~~-~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l-~~~-~~~~~L  274 (357)
                      +++|++|+++++ .+..++. .. ..+++|++|+++++..++.+ +..+..+++|++|+++++ .+..+ |.. ..+++|
T Consensus       123 l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          123 LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEE
T ss_pred             CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccC
Confidence            777777777764 4555554 11 12347777777776555554 345666777777777764 34444 222 235677


Q ss_pred             ceEEecCCCCceecccccccccCCccEEEEeccCCCCCc
Q 037573          275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMIS  313 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~  313 (357)
                      ++|++++ +.++.++...+..+++|++|++++  +.+..
T Consensus       201 ~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~--n~l~~  236 (353)
T 2z80_A          201 SHLILHM-KQHILLLEIFVDVTSSVECLELRD--TDLDT  236 (353)
T ss_dssp             EEEEEEC-SCSTTHHHHHHHHTTTEEEEEEES--CBCTT
T ss_pred             CeecCCC-CccccchhhhhhhcccccEEECCC--Ccccc
Confidence            7777776 445555444344567777777776  34444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=3.5e-14  Score=140.34  Aligned_cols=176  Identities=23%  Similarity=0.263  Sum_probs=107.1

Q ss_pred             CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573          122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS  201 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~  201 (357)
                      +++|+.|+++++. +..+|..   +++|++|++++| .+..+|..         +++|+.|+++++ .+..+|   ..++
T Consensus       120 l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---------~~~L~~L~L~~N-~l~~l~---~~~~  181 (622)
T 3g06_A          120 PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---------PSELCKLWAYNN-QLTSLP---MLPS  181 (622)
T ss_dssp             CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSS-CCSCCC---CCCT
T ss_pred             CCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---------cCCCCEEECCCC-CCCCCc---ccCC
Confidence            3445555555442 3444432   355555555553 34444332         445666666553 344555   2346


Q ss_pred             CccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecC
Q 037573          202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITD  281 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~  281 (357)
                      +|+.|+++++ .+..+|. ..+  +|+.|++++| .++.+|.   .+++|++|+++++ .++.+|  ..+++|+.|++++
T Consensus       182 ~L~~L~Ls~N-~l~~l~~-~~~--~L~~L~L~~N-~l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~  250 (622)
T 3g06_A          182 GLQELSVSDN-QLASLPT-LPS--ELYKLWAYNN-RLTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSG  250 (622)
T ss_dssp             TCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCS
T ss_pred             CCcEEECCCC-CCCCCCC-ccc--hhhEEECcCC-cccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCC
Confidence            7777777763 4555553 223  7777777664 3555553   3467888888774 677666  3457888888888


Q ss_pred             CCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573          282 VNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ  333 (357)
Q Consensus       282 c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~  333 (357)
                       +.++.++.    .+++|++|++++  +.+..+|..+..+++|+.|++++++
T Consensus       251 -N~L~~lp~----~~~~L~~L~Ls~--N~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          251 -NRLTSLPM----LPSGLLSLSVYR--NQLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             -SCCSCCCC----CCTTCCEEECCS--SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             -CCCCcCCc----ccccCcEEeCCC--CCCCcCCHHHhhccccCEEEecCCC
Confidence             56776654    567888888887  5777888777677888888887754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.58  E-value=6.2e-15  Score=134.21  Aligned_cols=195  Identities=14%  Similarity=0.106  Sum_probs=150.8

Q ss_pred             cCCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          120 QVLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       120 ~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      ..+++|++|+++++. +.. .|..+..+++|++|+++++ .+..++. +..      +++|++|++++| .+..+|.   
T Consensus        31 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~------l~~L~~L~Ls~n-~l~~l~~---   97 (317)
T 3o53_A           31 QSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLD-LES------LSTLRTLDLNNN-YVQELLV---   97 (317)
T ss_dssp             TTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETT------CTTCCEEECCSS-EEEEEEE---
T ss_pred             ccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhh------cCCCCEEECcCC-ccccccC---
Confidence            446899999999986 455 4467899999999999996 4544443 334      899999999996 4666653   


Q ss_pred             CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCC---CCCCc
Q 037573          199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEND---YPTNL  274 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L  274 (357)
                       .++|+.|+++++ .+..++...++  +|++|+++++. ++.+ +..+..+++|++|+++++ .+..++...   .+++|
T Consensus        98 -~~~L~~L~l~~n-~l~~~~~~~~~--~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L  171 (317)
T 3o53_A           98 -GPSIETLHAANN-NISRVSCSRGQ--GKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTL  171 (317)
T ss_dssp             -CTTCCEEECCSS-CCSEEEECCCS--SCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTC
T ss_pred             -CCCcCEEECCCC-ccCCcCccccC--CCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcC
Confidence             489999999985 66777766666  99999999865 5555 447888999999999995 566554332   36899


Q ss_pred             ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573          275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      ++|++++ +.++.++..  ..+++|++|++++  +.+..+|..+..+++|++|+++++ .++.++
T Consensus       172 ~~L~L~~-N~l~~~~~~--~~l~~L~~L~Ls~--N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~  230 (317)
T 3o53_A          172 EHLNLQY-NFIYDVKGQ--VVFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRNN-KLVLIE  230 (317)
T ss_dssp             CEEECTT-SCCCEEECC--CCCTTCCEEECCS--SCCCEECGGGGGGTTCSEEECTTS-CCCEEC
T ss_pred             CEEECCC-CcCcccccc--cccccCCEEECCC--CcCCcchhhhcccCcccEEECcCC-cccchh
Confidence            9999999 668776543  4699999999998  688888877777899999999875 444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.57  E-value=9.4e-16  Score=140.49  Aligned_cols=208  Identities=17%  Similarity=0.187  Sum_probs=146.3

Q ss_pred             ccCCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCc--cccc
Q 037573          119 IQVLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLK--CLPH  195 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~--~lp~  195 (357)
                      +..+++|++|++++|..-.. ++..+..+++|++|++++|.-....+..+..      +++|++|++++|..+.  .+|.
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~------~~~L~~L~L~~~~~l~~~~l~~  162 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK------NSNLVRLNLSGCSGFSEFALQT  162 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT------CTTCSEEECTTCBSCCHHHHHH
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc------CCCCCEEECCCCCCCCHHHHHH
Confidence            45689999999999874333 7777888999999999998533345544444      8899999999986565  3677


Q ss_pred             ccCCCCCccEEEecCCCCCcc--cCCCCCCCC-CcceEEeccCC-cc--hhhHhhhccCCcccceeeccCcCccc--cCC
Q 037573          196 ELHKLSRLQQIEIRNCPSLVS--FPERGLPST-NLTAVCVINCE-KL--EALLNGIHRLTSHQQLTVEQCPGIVA--IPE  267 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~--l~~~~~~~~-~L~~L~l~~c~-~l--~~l~~~~~~l~~L~~L~l~~c~~l~~--l~~  267 (357)
                      .+..+++|++|++++|..+..  ++.....++ +|++|++++|. .+  ..++..+..+++|++|++++|..++.  ++.
T Consensus       163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence            788899999999999866654  222122235 89999999985 34  45677788899999999999865442  222


Q ss_pred             CCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC--CCCCcceEecccCccccccc
Q 037573          268 NDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI--GSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       268 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~--~~~sL~~L~l~~c~~L~~l~  339 (357)
                      -..+++|++|++++|..+.......+..+++|++|++.+ |     ++....  ...++.+|+++ |..++...
T Consensus       243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~-~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~  309 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG-I-----VPDGTLQLLKEALPHLQIN-CSHFTTIA  309 (336)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT-S-----SCTTCHHHHHHHSTTSEES-CCCSCCTT
T ss_pred             HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC-c-----cCHHHHHHHHhhCcceEEe-cccCcccc
Confidence            233689999999998655533223467899999999999 7     443221  12346666664 55565543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.57  E-value=1.8e-15  Score=138.68  Aligned_cols=199  Identities=14%  Similarity=0.141  Sum_probs=148.6

Q ss_pred             CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcch-h-ccccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573          123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLV-S-FLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL  200 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-~-~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l  200 (357)
                      ++++.|+++++. +...+..+..+++|++|++++|. +. . ++.....      +++|++|++++|......|..++.+
T Consensus        70 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~------~~~L~~L~L~~~~l~~~~~~~l~~~  141 (336)
T 2ast_B           70 QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQ------CSKLQNLSLEGLRLSDPIVNTLAKN  141 (336)
T ss_dssp             TTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTT------BCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred             ccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhh------CCCCCEEeCcCcccCHHHHHHHhcC
Confidence            789999999876 44444447789999999999975 43 2 5554445      8999999999986444677888999


Q ss_pred             CCccEEEecCCCCCcc--cCC--CCCCCCCcceEEeccCCcchh--hHhhhccCC-cccceeeccCc-Ccc--ccCCC-C
Q 037573          201 SRLQQIEIRNCPSLVS--FPE--RGLPSTNLTAVCVINCEKLEA--LLNGIHRLT-SHQQLTVEQCP-GIV--AIPEN-D  269 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~--l~~--~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~-~L~~L~l~~c~-~l~--~l~~~-~  269 (357)
                      ++|++|++++|..+..  ++.  ..++  +|++|++++|..++.  ++..+..++ +|++|++++|. .+.  .++.. .
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~  219 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQTLLSSCS--RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  219 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHCT--TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHhcCC--CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence            9999999999866653  332  3345  999999999856664  677788999 99999999985 332  23322 2


Q ss_pred             CCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccC
Q 037573          270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c  332 (357)
                      .+++|++|++++|..++......+..+++|++|++++ |..+..- ...+..+++|++|++++|
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR-CYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT-CTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC-CCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            3689999999997656644344578899999999999 8744221 012335789999999988

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.56  E-value=8.4e-14  Score=125.13  Aligned_cols=172  Identities=17%  Similarity=0.157  Sum_probs=142.1

Q ss_pred             cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc-ccccCCCCCccEEEecCCCCCcccCC-C
Q 037573          143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL-PHELHKLSRLQQIEIRNCPSLVSFPE-R  220 (357)
Q Consensus       143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~-~  220 (357)
                      ++.+++++++++++ ..+..+|..+        .++++.|+++++. +..+ |..+..+++|+.|+++++ .+..++. .
T Consensus         6 ~~~l~~l~~l~~~~-~~l~~ip~~~--------~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~   74 (290)
T 1p9a_G            6 VSKVASHLEVNCDK-RNLTALPPDL--------PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDG   74 (290)
T ss_dssp             EECSTTCCEEECTT-SCCSSCCSCC--------CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEECCS
T ss_pred             ccccCCccEEECCC-CCCCcCCCCC--------CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcccCCC
Confidence            67889999999998 5788888765        5689999999965 5555 567889999999999985 6666665 3


Q ss_pred             CCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCC
Q 037573          221 GLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNS  298 (357)
Q Consensus       221 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~  298 (357)
                      .++  +|++|+++++ .++.+|..+..+++|++|++++ +.++.++..  ..+++|++|++++ +.++.+++..+..+++
T Consensus        75 ~l~--~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~  149 (290)
T 1p9a_G           75 TLP--VLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPK  149 (290)
T ss_dssp             CCT--TCCEEECCSS-CCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTT
T ss_pred             CCC--cCCEEECCCC-cCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccC
Confidence            444  9999999885 5788888889999999999998 578877754  3378999999999 7788887776788999


Q ss_pred             ccEEEEeccCCCCCcCCCCC-CCCCCcceEecccC
Q 037573          299 LKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRDF  332 (357)
Q Consensus       299 L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~c  332 (357)
                      |+.|++++  +.+..+|... ..+++|++|++++.
T Consensus       150 L~~L~L~~--N~l~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          150 LEKLSLAN--NNLTELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             CCEEECTT--SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCC--CcCCccCHHHhcCcCCCCEEECCCC
Confidence            99999998  7899998765 35899999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.55  E-value=2.1e-13  Score=134.73  Aligned_cols=179  Identities=25%  Similarity=0.281  Sum_probs=124.8

Q ss_pred             CCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573          121 VLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL  200 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l  200 (357)
                      .+++|++|+++++. +..+|.   .+++|++|+++++ .+..+|..         +++|+.|++++| .+..+|..   +
T Consensus        99 ~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---------l~~L~~L~Ls~N-~l~~l~~~---~  160 (622)
T 3g06_A           99 LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSDN-QLASLPAL---P  160 (622)
T ss_dssp             CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSS-CCSCCCCC---C
T ss_pred             CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCC---------CCCCCEEECcCC-cCCCcCCc---c
Confidence            35667777776653 455555   4566777777663 45555543         577888888875 46666643   4


Q ss_pred             CCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEec
Q 037573          201 SRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKIT  280 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~  280 (357)
                      ++|+.|++++ ..+..+| ..++  +|+.|++++|. ++.+|.   .+++|+.|+++++ .++.+|.  .+++|++|+++
T Consensus       161 ~~L~~L~L~~-N~l~~l~-~~~~--~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls  229 (622)
T 3g06_A          161 SELCKLWAYN-NQLTSLP-MLPS--GLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVS  229 (622)
T ss_dssp             TTCCEEECCS-SCCSCCC-CCCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECC
T ss_pred             CCCCEEECCC-CCCCCCc-ccCC--CCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCC--CCCCCCEEEcc
Confidence            6777888876 4666676 3444  88888887744 666654   3478888888884 6777764  35789999999


Q ss_pred             CCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573          281 DVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       281 ~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      + +.++.++    ..+++|++|++++  +.+..+|.   .+++|++|+++++ .++.++
T Consensus       230 ~-N~L~~lp----~~l~~L~~L~Ls~--N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp  277 (622)
T 3g06_A          230 G-NRLTSLP----VLPSELKELMVSG--NRLTSLPM---LPSGLLSLSVYRN-QLTRLP  277 (622)
T ss_dssp             S-SCCSCCC----CCCTTCCEEECCS--SCCSCCCC---CCTTCCEEECCSS-CCCSCC
T ss_pred             C-CccCcCC----CCCCcCcEEECCC--CCCCcCCc---ccccCcEEeCCCC-CCCcCC
Confidence            8 6777665    4568899999998  58888887   6789999999876 455554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=2.7e-14  Score=137.68  Aligned_cols=190  Identities=12%  Similarity=0.047  Sum_probs=148.1

Q ss_pred             CCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573          121 VLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL  200 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l  200 (357)
                      .+++|++|+++++..-...|..++.+++|++|+++++. +...++ +..      +++|+.|++++| .+..+|.    .
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~------l~~L~~L~Ls~N-~l~~l~~----~   98 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LES------LSTLRTLDLNNN-YVQELLV----G   98 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTT------CTTCCEEECCSS-EEEEEEE----C
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-ccc------CCCCCEEEecCC-cCCCCCC----C
Confidence            35699999999986433345689999999999999964 554444 334      899999999996 4666664    3


Q ss_pred             CCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCcccc-CCC--CCCCCcceE
Q 037573          201 SRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAI-PEN--DYPTNLTIL  277 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~--~~~~~L~~L  277 (357)
                      ++|+.|+++++ .+..++...++  +|++|++++|.--...|..+..+++|++|+++++ .+... |..  ..+++|++|
T Consensus        99 ~~L~~L~L~~N-~l~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A           99 PSIETLHAANN-NISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             TTCCEEECCSS-CCCCEEECCCS--SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEE
T ss_pred             CCcCEEECcCC-cCCCCCccccC--CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEE
Confidence            89999999985 66667666666  9999999986643344567889999999999995 55543 332  136899999


Q ss_pred             EecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          278 KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      ++++ +.++.++..  ..+++|++|++++  +.+..+|..+..+++|++|+++++
T Consensus       175 ~Ls~-N~l~~~~~~--~~l~~L~~L~Ls~--N~l~~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          175 NLQY-NFIYDVKGQ--VVFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             ECTT-SCCCEEECC--CCCTTCCEEECCS--SCCCEECGGGGGGTTCSEEECTTS
T ss_pred             ecCC-Ccccccccc--ccCCCCCEEECCC--CCCCCCCHhHcCCCCccEEEecCC
Confidence            9999 668776543  5699999999998  788888877777899999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=8.2e-14  Score=128.58  Aligned_cols=204  Identities=18%  Similarity=0.201  Sum_probs=151.6

Q ss_pred             CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCcccc-cccCC
Q 037573          123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLP-HELHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~  199 (357)
                      +++++|+++++. ++.+|. .+..+++|++|+++++..++.+|...+ +      +++++.+.+.+++.+..+| ..+..
T Consensus        30 ~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~------L~~l~~~l~~~~N~l~~l~~~~f~~  102 (350)
T 4ay9_X           30 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN------LPKLHEIRIEKANNLLYINPEAFQN  102 (350)
T ss_dssp             TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS------CTTCCEEEEEEETTCCEECTTSBCC
T ss_pred             CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc------chhhhhhhcccCCcccccCchhhhh
Confidence            678899998864 778875 578899999999998765566665442 4      6777776666666788774 45678


Q ss_pred             CCCccEEEecCCCCCcccCCC-CCCCCCcceEEeccCCcchhhHh-hhccC-CcccceeeccCcCccccCCCCC-CCCcc
Q 037573          200 LSRLQQIEIRNCPSLVSFPER-GLPSTNLTAVCVINCEKLEALLN-GIHRL-TSHQQLTVEQCPGIVAIPENDY-PTNLT  275 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~-~~~L~  275 (357)
                      +++|+.|+++++ .+..++.. .....++..+++.++..+..++. .+..+ ..++.|++++ +.++.++...+ ..+|+
T Consensus       103 l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~  180 (350)
T 4ay9_X          103 LPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLD  180 (350)
T ss_dssp             CTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEE
T ss_pred             cccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchh
Confidence            899999999874 56666652 22334677888888777777764 34444 4578888887 57888876633 56888


Q ss_pred             eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573          276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      ++++.+++.++.++...+..+++|++|++++  ++++.+|...  +.+|++|.+.++.+++.++
T Consensus       181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~--N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          181 ELNLSDNNNLEELPNDVFHGASGPVILDISR--TRIHSLPSYG--LENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             EEECTTCTTCCCCCTTTTTTEECCSEEECTT--SCCCCCCSSS--CTTCCEEECTTCTTCCCCC
T ss_pred             HHhhccCCcccCCCHHHhccCcccchhhcCC--CCcCccChhh--hccchHhhhccCCCcCcCC
Confidence            9999888888888877778889999999998  6888888754  5678888888887777776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.53  E-value=9.2e-14  Score=125.98  Aligned_cols=176  Identities=20%  Similarity=0.264  Sum_probs=139.4

Q ss_pred             cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      .+..+++|++|+++++. +..++. +..+++|++|+++++ .+..++. +..      +++|+.|++++|. +..+|. +
T Consensus        58 ~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~------l~~L~~L~l~~n~-l~~~~~-l  125 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLKNVSA-IAG------LQSIKTLDLTSTQ-ITDVTP-L  125 (308)
T ss_dssp             TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCSCCGG-GTT------CTTCCEEECTTSC-CCCCGG-G
T ss_pred             hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC-cCCCchh-hcC------CCCCCEEECCCCC-CCCchh-h
Confidence            36778999999999985 677777 899999999999996 4666653 334      8999999999964 677765 8


Q ss_pred             CCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcce
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTI  276 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~  276 (357)
                      ..+++|+.|+++++ .+..++. ..++  +|++|++++| .++.++. +..+++|++|+++++ .+..++....+++|++
T Consensus       126 ~~l~~L~~L~l~~n-~l~~~~~l~~l~--~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~  199 (308)
T 1h6u_A          126 AGLSNLQVLYLDLN-QITNISPLAGLT--NLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISPLASLPNLIE  199 (308)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGGGGGCT--TCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCE
T ss_pred             cCCCCCCEEECCCC-ccCcCccccCCC--CccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChhhcCCCCCCE
Confidence            89999999999986 5555554 3344  9999999986 4677765 889999999999985 6776665455789999


Q ss_pred             EEecCCCCceecccccccccCCccEEEEeccCCCCCcCCC
Q 037573          277 LKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQ  316 (357)
Q Consensus       277 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~  316 (357)
                      |++++ +.++.+++  +..+++|++|++++  +.+...|.
T Consensus       200 L~L~~-N~l~~~~~--l~~l~~L~~L~l~~--N~i~~~~~  234 (308)
T 1h6u_A          200 VHLKN-NQISDVSP--LANTSNLFIVTLTN--QTITNQPV  234 (308)
T ss_dssp             EECTT-SCCCBCGG--GTTCTTCCEEEEEE--EEEECCCE
T ss_pred             EEccC-CccCcccc--ccCCCCCCEEEccC--CeeecCCe
Confidence            99999 67776663  68899999999998  45655543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.53  E-value=2.4e-13  Score=120.76  Aligned_cols=171  Identities=27%  Similarity=0.364  Sum_probs=134.5

Q ss_pred             CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc-ccCC
Q 037573          123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH-ELHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~  199 (357)
                      +++++|+++++. +..++. .++.+++|++|+++++ .+..++... ..      +++|++|+++++ .+..+|. .+..
T Consensus        37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~------l~~L~~L~l~~n-~l~~~~~~~~~~  107 (270)
T 2o6q_A           37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKE------LKNLETLWVTDN-KLQALPIGVFDQ  107 (270)
T ss_dssp             TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSS------CTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcC------CCCCCEEECCCC-cCCcCCHhHccc
Confidence            679999999876 566654 6889999999999984 577777654 35      889999999986 4666764 4577


Q ss_pred             CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCCC--CCCCcc
Q 037573          200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPEND--YPTNLT  275 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~  275 (357)
                      +++|+.|+++++ .+..++...+ .+++|++|+++++. ++.+|.. +..+++|++|+++++ .++.++...  .+++|+
T Consensus       108 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          108 LVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             CSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred             ccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcC
Confidence            999999999984 6666665332 23599999998864 6666654 788999999999985 677777643  368999


Q ss_pred             eEEecCCCCceecccccccccCCccEEEEec
Q 037573          276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      +|++++ +.++.++...+..+++|++|++.+
T Consensus       185 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          185 TLKLDN-NQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             EEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EEECCC-CcCCcCCHHHhccccCCCEEEecC
Confidence            999999 678878776678899999999998

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=1.5e-13  Score=124.60  Aligned_cols=193  Identities=12%  Similarity=0.113  Sum_probs=138.1

Q ss_pred             CCcccEEeeccCcCcccccccc--CCCCCcCEEeecCCCcchhcc----ccccccccccccccccEEEeeCCCCCccccc
Q 037573          122 LCRLKYLELIDCECLVNLPQAL--HCLSSLTEITVAGCTKLVSFL----ELSSVAEMFAIITSFENIMVNGCDNLKCLPH  195 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~i~~c~~l~~~~----~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~  195 (357)
                      +++|++|+++++...+..|..+  ..+++|++|+++++.--...+    .....      +++|++|++++|.-....|.
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~------~~~L~~L~Ls~n~l~~~~~~  163 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL------KPGLKVLSIAQAHSPAFSCE  163 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB------CSCCCEEEEECCSSCCCCTT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh------ccCCCEEEeeCCCcchhhHH
Confidence            4679999999987666677766  889999999999864322222    11113      88999999999764333346


Q ss_pred             ccCCCCCccEEEecCCCCCcc--cCC----CCCCCCCcceEEeccCCcchhhHh----hhccCCcccceeeccCcCcccc
Q 037573          196 ELHKLSRLQQIEIRNCPSLVS--FPE----RGLPSTNLTAVCVINCEKLEALLN----GIHRLTSHQQLTVEQCPGIVAI  265 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~--l~~----~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~c~~l~~l  265 (357)
                      .++.+++|++|+++++.-...  ++.    ..++  +|++|++++|. ++.++.    .++.+++|++|+++++ .+...
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~--~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~  239 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP--AIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHN-SLRAT  239 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC--CCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTS-CCCCC
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCC--CCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCC-CCCcc
Confidence            788899999999998753321  221    3444  99999999865 565544    2478899999999985 56655


Q ss_pred             -CCC-CC---CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          266 -PEN-DY---PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       266 -~~~-~~---~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                       |.. +.   +++|++|++++ +.++.++.. +  .++|++|++++  +.+..+|.. ..+++|++|++++
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~-~--~~~L~~L~Ls~--N~l~~~~~~-~~l~~L~~L~L~~  303 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSF-AGLEQVPKG-L--PAKLRVLDLSS--NRLNRAPQP-DELPEVDNLTLDG  303 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCS-SCCCSCCSC-C--CSCCSCEECCS--CCCCSCCCT-TSCCCCSCEECSS
T ss_pred             chhhHHhccCcCcCCEEECCC-CCCCchhhh-h--cCCCCEEECCC--CcCCCCchh-hhCCCccEEECcC
Confidence             433 22   47999999998 778877654 3  38999999998  788887652 3556777776654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.53  E-value=4.8e-14  Score=138.24  Aligned_cols=243  Identities=15%  Similarity=0.084  Sum_probs=164.1

Q ss_pred             CcccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCcccE
Q 037573           48 STSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKY  127 (357)
Q Consensus        48 ~~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  127 (357)
                      ..++++.+++++|......+.+..+ .|+.+.+.++. +..++... .-.+........     ..........+++|++
T Consensus       280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~-l~~L~~L~l~~n-----~~~~~~~~~~~~~L~~  351 (570)
T 2z63_A          280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPTLK-LKSLKRLTFTSN-----KGGNAFSEVDLPSLEF  351 (570)
T ss_dssp             GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCBCB-CSSCCEEEEESC-----BSCCBCCCCBCTTCCE
T ss_pred             CcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCccc-ccccCEEeCcCC-----ccccccccccCCCCCE
Confidence            3568888988887643332334444 67666665543 22332210 000111100000     0111111267899999


Q ss_pred             EeeccCcCcccc---ccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc-c-cccCCCCC
Q 037573          128 LELIDCECLVNL---PQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL-P-HELHKLSR  202 (357)
Q Consensus       128 L~l~~~~~l~~l---p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p-~~l~~l~~  202 (357)
                      |+++++. +..+   |..+..+++|++|+++++ .+..++..+..      +++|+.|++++|. +... | ..+..+++
T Consensus       352 L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          352 LDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG------LEQLEHLDFQHSN-LKQMSEFSVFLSLRN  422 (570)
T ss_dssp             EECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEET------CTTCCEEECTTSE-EESCTTSCTTTTCTT
T ss_pred             EeCcCCc-cCccccccccccccCccCEEECCCC-ccccccccccc------cCCCCEEEccCCc-cccccchhhhhcCCC
Confidence            9999986 3443   567889999999999996 46666655445      8999999999965 4443 3 35788999


Q ss_pred             ccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcc-hhhHhhhccCCcccceeeccCcCcccc-CCC-CCCCCcceEEe
Q 037573          203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKL-EALLNGIHRLTSHQQLTVEQCPGIVAI-PEN-DYPTNLTILKI  279 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~-~~~~~L~~L~l  279 (357)
                      |+.|++++|......+.....+++|++|++++|... ..+|..+..+++|++|++++| .++.+ |.. ..+++|++|++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeC
Confidence            999999997544434432222349999999997643 357888999999999999996 56666 433 44789999999


Q ss_pred             cCCCCceecccccccccCCccEEEEeccCCC
Q 037573          280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPD  310 (357)
Q Consensus       280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~  310 (357)
                      ++ +.++.+++..+..+++|++|++++ ++-
T Consensus       502 ~~-n~l~~~~~~~~~~l~~L~~L~l~~-N~~  530 (570)
T 2z63_A          502 AS-NQLKSVPDGIFDRLTSLQKIWLHT-NPW  530 (570)
T ss_dssp             CS-SCCSCCCTTTTTTCTTCCEEECCS-SCB
T ss_pred             CC-CcCCCCCHHHhhcccCCcEEEecC-Ccc
Confidence            99 578877776688999999999998 543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=1.8e-13  Score=121.74  Aligned_cols=175  Identities=22%  Similarity=0.340  Sum_probs=126.4

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc-c
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE-L  197 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l  197 (357)
                      ...+++|+.|.+.++. +..++. ++.+++|++|+++++ .+..++ .+..      +++|++|++++| .+..+|.. +
T Consensus        37 ~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~------l~~L~~L~L~~n-~l~~~~~~~~  105 (272)
T 3rfs_A           37 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGN-KLHDIS-ALKE------LTNLTYLILTGN-QLQSLPNGVF  105 (272)
T ss_dssp             HHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTS-CCCCCG-GGTT------CTTCCEEECTTS-CCCCCCTTTT
T ss_pred             cccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCC-CCCCch-hhcC------CCCCCEEECCCC-ccCccChhHh
Confidence            4557888899998875 566654 778899999999885 455544 2223      888999999886 45666544 5


Q ss_pred             CCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCC
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTN  273 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~  273 (357)
                      ..+++|+.|+++++ .+..++...+ .+++|++|++++|. ++.++. .+..+++|++|++++| .++.++..  +.+++
T Consensus       106 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~  182 (272)
T 3rfs_A          106 DKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQ  182 (272)
T ss_dssp             TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             cCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCcc
Confidence            77889999999875 5666665322 23489999998864 566654 4578889999999885 56666654  34688


Q ss_pred             cceEEecCCCCceecccccccccCCccEEEEeccCC
Q 037573          274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFP  309 (357)
Q Consensus       274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~  309 (357)
                      |++|++++ +.++.+++..+..+++|++|++.+ ++
T Consensus       183 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~  216 (272)
T 3rfs_A          183 LKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHD-NP  216 (272)
T ss_dssp             CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS-SC
T ss_pred             CCEEECCC-CcCCccCHHHHhCCcCCCEEEccC-CC
Confidence            99999988 567767666567888999999988 53

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.52  E-value=3.4e-13  Score=133.55  Aligned_cols=103  Identities=20%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             CCcceEEeccCCcchh-hHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccE
Q 037573          225 TNLTAVCVINCEKLEA-LLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKE  301 (357)
Q Consensus       225 ~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~  301 (357)
                      ++|+.|+++++..... .|..+..+++|++|++++| .++.++..  +.+++|++|++++ +.++.+++..+..+++|++
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCE
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCE
Confidence            3666777766654443 3456777888888888885 56666544  2367888888888 6777777666778888888


Q ss_pred             EEEeccCCCCCcCCCC-CC-CCCCcceEeccc
Q 037573          302 LIVNGEFPDMISFPQE-EI-GSTSLTRLWIRD  331 (357)
Q Consensus       302 L~l~~~c~~l~~l~~~-~~-~~~sL~~L~l~~  331 (357)
                      |++++  +++..++.. +. .+++|++|++++
T Consensus       547 L~Ls~--N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          547 LDYSL--NHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             EECTT--SCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             EECCC--CcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            88887  667666443 32 246788888864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.49  E-value=2.9e-13  Score=120.56  Aligned_cols=176  Identities=20%  Similarity=0.283  Sum_probs=132.1

Q ss_pred             cccCCCcccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCccccc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPH  195 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~  195 (357)
                      .+..+++|++|+++++. +..++ ..+..+++|++|+++++ .+..++. .+..      +++|+.|+++++. +..++.
T Consensus        47 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~  117 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG------LSSLQKLVAVETN-LASLEN  117 (276)
T ss_dssp             TTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTT------CTTCCEEECTTSC-CCCSTT
T ss_pred             HhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcC------CccccEEECCCCC-ccccCc
Confidence            36778999999999985 55655 46889999999999985 4555553 3345      8999999999864 555544


Q ss_pred             -ccCCCCCccEEEecCCCCCcc--cCCCCCCCCCcceEEeccCCcchhh-HhhhccCCccc----ceeeccCcCccccCC
Q 037573          196 -ELHKLSRLQQIEIRNCPSLVS--FPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQ----QLTVEQCPGIVAIPE  267 (357)
Q Consensus       196 -~l~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~----~L~l~~c~~l~~l~~  267 (357)
                       .++.+++|+.|+++++ .+..  +|.....+++|++|+++++. ++.+ +..+..+++|+    +|++++ +.+..++.
T Consensus       118 ~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~  194 (276)
T 2z62_A          118 FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQP  194 (276)
T ss_dssp             CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCS-SCCCEECT
T ss_pred             hhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCC-CcccccCc
Confidence             6888999999999985 4554  34322223499999999865 4544 34555666666    788888 46777766


Q ss_pred             CCC-CCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573          268 NDY-PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       268 ~~~-~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      ..+ ..+|+.|++++ +.++.++...+..+++|++|++++
T Consensus       195 ~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          195 GAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             TSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             cccCCCcccEEECCC-CceeecCHhHhcccccccEEEccC
Confidence            533 45899999999 678888777678899999999997

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.48  E-value=6.6e-14  Score=127.13  Aligned_cols=199  Identities=14%  Similarity=0.127  Sum_probs=144.0

Q ss_pred             ccEEeeccCcC-ccccccccC-------CCCCcCEEeecCCCcchhccccc--cccccccccccccEEEeeCCCCCcccc
Q 037573          125 LKYLELIDCEC-LVNLPQALH-------CLSSLTEITVAGCTKLVSFLELS--SVAEMFAIITSFENIMVNGCDNLKCLP  194 (357)
Q Consensus       125 L~~L~l~~~~~-l~~lp~~~~-------~l~~L~~L~i~~c~~l~~~~~~~--~~L~~L~~l~~L~~L~l~~c~~l~~lp  194 (357)
                      |+.|+++++.. -..+|..+.       .+++|++|+++++.--..+|..+  ..      +++|+.|+++++. +..+|
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~------l~~L~~L~Ls~N~-l~~~~  137 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT------GPDLNILNLRNVS-WATRD  137 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC------SCCCSEEEEESCB-CSSSS
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc------CCCccEEEccCCC-Ccchh
Confidence            66677776543 123555444       68999999999965434667654  45      8999999999964 66667


Q ss_pred             cccCCC-----CCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchh--hHhhh--ccCCcccceeeccCcCccc
Q 037573          195 HELHKL-----SRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEA--LLNGI--HRLTSHQQLTVEQCPGIVA  264 (357)
Q Consensus       195 ~~l~~l-----~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~--l~~~~--~~l~~L~~L~l~~c~~l~~  264 (357)
                      ..++.+     ++|++|+++++ .+..++. ....+++|++|+++++...+.  ++..+  ..+++|++|+++++ .++.
T Consensus       138 ~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~  215 (312)
T 1wwl_A          138 AWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMET  215 (312)
T ss_dssp             SHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCC
T ss_pred             HHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcc
Confidence            777666     89999999985 5666664 222345999999999775443  34455  88999999999995 5663


Q ss_pred             cCC---C--CCCCCcceEEecCCCCceecc-cccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccc
Q 037573          265 IPE---N--DYPTNLTILKITDVNIFKSLF-QWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYI  338 (357)
Q Consensus       265 l~~---~--~~~~~L~~L~l~~c~~l~~~~-~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l  338 (357)
                      ++.   .  ..+++|+.|++++ +.++... ...+..+++|++|++++  +.++.+|..+.  ++|++|++++. .++.+
T Consensus       216 ~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~--N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~  289 (312)
T 1wwl_A          216 PSGVCSALAAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSF--TGLKQVPKGLP--AKLSVLDLSYN-RLDRN  289 (312)
T ss_dssp             HHHHHHHHHHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTT--SCCSSCCSSCC--SEEEEEECCSS-CCCSC
T ss_pred             hHHHHHHHHhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCC--CccChhhhhcc--CCceEEECCCC-CCCCC
Confidence            321   1  1357999999999 6677543 23356689999999998  68889998774  89999999865 44444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.47  E-value=1.1e-12  Score=115.27  Aligned_cols=169  Identities=21%  Similarity=0.291  Sum_probs=122.7

Q ss_pred             CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccc-cccCCC
Q 037573          123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLP-HELHKL  200 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~l  200 (357)
                      ...+.+++++. .+..+|..+.  ++++.|+++++ .+..++.. +..      +++|++|+++++. +..++ ..+..+
T Consensus        14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~~~~~~~~l   82 (251)
T 3m19_A           14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRG------LTKLTWLNLDYNQ-LQTLSAGVFDDL   82 (251)
T ss_dssp             GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTT------CTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred             CCCeEEecCCC-CccccCCCCC--CCCCEEEccCC-CcCccCHhHhcC------cccCCEEECCCCc-CCccCHhHhccC
Confidence            45677888775 4777887554  68999999885 45555543 335      8899999998864 55554 446788


Q ss_pred             CCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCC--CCCCCcce
Q 037573          201 SRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTI  276 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~  276 (357)
                      ++|+.|+++++ .+..++...+ .+++|++|+++++ .++.++.. +..+++|++|+++++ .++.++..  +.+++|++
T Consensus        83 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  159 (251)
T 3m19_A           83 TELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQT  159 (251)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCE
Confidence            99999999874 5666665322 2348999999875 46666554 577888999999884 67777764  33678999


Q ss_pred             EEecCCCCceecccccccccCCccEEEEec
Q 037573          277 LKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       277 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      |++++ +.++.+++..+..+++|++|++.+
T Consensus       160 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          160 LSLST-NQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             EECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence            99988 677777766677888899999887

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.47  E-value=1e-12  Score=116.76  Aligned_cols=199  Identities=22%  Similarity=0.318  Sum_probs=147.2

Q ss_pred             CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573          123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR  202 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  202 (357)
                      .++..+.+.+.. +.... ....+++|+.|++.++ .+..++. +..      +++|+.|+++++. +..++ .+..+++
T Consensus        19 ~~l~~l~l~~~~-~~~~~-~~~~l~~L~~L~l~~~-~i~~~~~-l~~------l~~L~~L~l~~n~-l~~~~-~l~~l~~   86 (272)
T 3rfs_A           19 AETIKANLKKKS-VTDAV-TQNELNSIDQIIANNS-DIKSVQG-IQY------LPNVRYLALGGNK-LHDIS-ALKELTN   86 (272)
T ss_dssp             HHHHHHHHTCSC-TTSEE-CHHHHTTCCEEECTTS-CCCCCTT-GGG------CTTCCEEECTTSC-CCCCG-GGTTCTT
T ss_pred             HHHHHHHhcCcc-ccccc-ccccccceeeeeeCCC-Ccccccc-ccc------CCCCcEEECCCCC-CCCch-hhcCCCC
Confidence            344444454432 22322 2556889999999985 4555543 223      8999999999964 66664 6889999


Q ss_pred             ccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEE
Q 037573          203 LQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILK  278 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~  278 (357)
                      |++|+++++ .+..++...+ .+++|++|++++|. ++.++. .+..+++|++|+++++ .++.++..  +.+++|+.|+
T Consensus        87 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A           87 LTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             CCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEE
Confidence            999999986 6667765332 23499999999865 556554 4788999999999996 67777764  3478999999


Q ss_pred             ecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEeccc------Cccccccc
Q 037573          279 ITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRD------FQNLEYIS  339 (357)
Q Consensus       279 l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~------c~~L~~l~  339 (357)
                      +++ +.++.+++..+..+++|++|++.+  +.+..++.. +..+++|++|++++      |+.++.+.
T Consensus       164 l~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~  228 (272)
T 3rfs_A          164 LSY-NQLQSLPEGVFDKLTQLKDLRLYQ--NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS  228 (272)
T ss_dssp             CCS-SCCCCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred             CCC-CCcCccCHHHhcCCccCCEEECCC--CcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHH
Confidence            999 578877776678899999999998  577777654 45689999999986      56666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.47  E-value=4.6e-13  Score=130.89  Aligned_cols=175  Identities=22%  Similarity=0.281  Sum_probs=119.9

Q ss_pred             cccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCc
Q 037573          124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRL  203 (357)
Q Consensus       124 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L  203 (357)
                      +|+.|+++++. +..+|..+  +++|++|+++++ .+..+| .  .      +++|+.|++++| .+..+|. +..  +|
T Consensus        60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N-~l~~ip-~--~------l~~L~~L~Ls~N-~l~~ip~-l~~--~L  122 (571)
T 3cvr_A           60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQN-ALISLP-E--L------PASLEYLDACDN-RLSTLPE-LPA--SL  122 (571)
T ss_dssp             TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSS-CCSCCC-C--C------CTTCCEEECCSS-CCSCCCC-CCT--TC
T ss_pred             CccEEEeCCCC-CCccCHhH--cCCCCEEECcCC-CCcccc-c--c------cCCCCEEEccCC-CCCCcch-hhc--CC
Confidence            77888887764 56677655  377888888874 566676 2  2      678888888875 4666776 544  78


Q ss_pred             cEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCC
Q 037573          204 QQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVN  283 (357)
Q Consensus       204 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  283 (357)
                      +.|+++++ .+..+|. .++  +|++|+++++. ++.+|.   .+++|++|+++++ .++.+|.  +.++|+.|++++ |
T Consensus       123 ~~L~Ls~N-~l~~lp~-~l~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~~~L~~L~Ls~-N  190 (571)
T 3cvr_A          123 KHLDVDNN-QLTMLPE-LPA--LLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE--LPESLEALDVST-N  190 (571)
T ss_dssp             CEEECCSS-CCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS-S
T ss_pred             CEEECCCC-cCCCCCC-cCc--cccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch--hhCCCCEEECcC-C
Confidence            88888874 5666776 444  78888887744 666664   5677888888774 5666766  347888888887 5


Q ss_pred             CceecccccccccCCc-------cEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573          284 IFKSLFQWGLHRLNSL-------KELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ  333 (357)
Q Consensus       284 ~l~~~~~~~l~~l~~L-------~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~  333 (357)
                      .++.++.  +..  +|       +.|++++  +.+..+|..++.+++|++|++++.+
T Consensus       191 ~L~~lp~--~~~--~L~~~~~~L~~L~Ls~--N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          191 LLESLPA--VPV--RNHHSEETEIFFRCRE--NRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CCSSCCC--CC----------CCEEEECCS--SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             CCCchhh--HHH--hhhcccccceEEecCC--CcceecCHHHhcCCCCCEEEeeCCc
Confidence            6766554  222  55       8888887  6777788766667788888887653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.46  E-value=8.2e-13  Score=111.63  Aligned_cols=150  Identities=16%  Similarity=0.228  Sum_probs=77.9

Q ss_pred             cCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCC
Q 037573          120 QVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHK  199 (357)
Q Consensus       120 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~  199 (357)
                      ..+++|++|+++++. +..+| .+..+++|++|++++| .+..++. +..      +++|++|++++|.--...|..++.
T Consensus        41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~-l~~------l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNP-ISG------LSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGG-GTT------CTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchh-hhc------CCCCCEEEeECCccCcccChhhcC
Confidence            345666666666653 34555 3555566666666654 3333321 112      455555555553321122333333


Q ss_pred             CCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEe
Q 037573          200 LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKI  279 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l  279 (357)
                      ++                        +|++|++++|.--...|..+..+++|++|++++|..+..++....+++|+.|++
T Consensus       111 l~------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l  166 (197)
T 4ezg_A          111 LT------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI  166 (197)
T ss_dssp             CT------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEEC
T ss_pred             CC------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEEC
Confidence            33                        555555555443333445556666666666666543555543333566666666


Q ss_pred             cCCCCceecccccccccCCccEEEEec
Q 037573          280 TDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      ++ +.++.++  .+..+++|++|++++
T Consensus       167 ~~-n~i~~~~--~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          167 QF-DGVHDYR--GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             TT-BCCCCCT--TGGGCSSCCEEEECB
T ss_pred             CC-CCCcChH--HhccCCCCCEEEeeC
Confidence            66 3455443  356667777777776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=4.7e-13  Score=120.28  Aligned_cols=173  Identities=18%  Similarity=0.253  Sum_probs=132.2

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      ...+++|+.|+++++. +..++. +..+++|++|+++++ .+..++. +..      +++|+.|+++++ .+..+|. +.
T Consensus        42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~------l~~L~~L~l~~n-~l~~~~~-l~  109 (291)
T 1h6t_A           42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LAN------LKNLGWLFLDEN-KVKDLSS-LK  109 (291)
T ss_dssp             HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTT------CTTCCEEECCSS-CCCCGGG-GT
T ss_pred             hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCC-ccCCCcc-ccc------CCCCCEEECCCC-cCCCChh-hc
Confidence            4567899999999875 666765 788999999999985 5666665 334      889999999986 4666654 88


Q ss_pred             CCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573          199 KLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL  277 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  277 (357)
                      .+++|+.|+++++ .+..++. ..++  +|++|++++|. ++.+ ..+..+++|++|++++| .+..++....+++|+.|
T Consensus       110 ~l~~L~~L~L~~n-~i~~~~~l~~l~--~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L  183 (291)
T 1h6t_A          110 DLKKLKSLSLEHN-GISDINGLVHLP--QLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNL  183 (291)
T ss_dssp             TCTTCCEEECTTS-CCCCCGGGGGCT--TCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEE
T ss_pred             cCCCCCEEECCCC-cCCCChhhcCCC--CCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC-ccccchhhcCCCccCEE
Confidence            8999999999986 5555543 3344  89999998854 6666 57888999999999885 56666544557899999


Q ss_pred             EecCCCCceecccccccccCCccEEEEeccCCCCCcC
Q 037573          278 KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF  314 (357)
Q Consensus       278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l  314 (357)
                      ++++ +.++.++.  +..+++|+.|++++  +.+...
T Consensus       184 ~L~~-N~i~~l~~--l~~l~~L~~L~l~~--n~i~~~  215 (291)
T 1h6t_A          184 YLSK-NHISDLRA--LAGLKNLDVLELFS--QECLNK  215 (291)
T ss_dssp             ECCS-SCCCBCGG--GTTCTTCSEEEEEE--EEEECC
T ss_pred             ECCC-CcCCCChh--hccCCCCCEEECcC--CcccCC
Confidence            9998 67777653  68899999999998  344443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.44  E-value=1.9e-12  Score=113.66  Aligned_cols=152  Identities=18%  Similarity=0.239  Sum_probs=108.8

Q ss_pred             CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccc-cccCCC
Q 037573          123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLP-HELHKL  200 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~l  200 (357)
                      ++++.|+++++..-...+..++.+++|++|+++++ .+..++.. +..      +++|+.|+++++. +..+| ..+..+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~~~~~~~~l  106 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDD------LTELGTLGLANNQ-LASLPLGVFDHL  106 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTT------CTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhcc------CCcCCEEECCCCc-ccccChhHhccc
Confidence            67888999887643334446888899999999884 56555543 234      7889999998854 55665 345778


Q ss_pred             CCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcce
Q 037573          201 SRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTI  276 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~  276 (357)
                      ++|+.|+++++ .+..++...+ .+++|++|+++++ .++.++. .+..+++|++|+++++ .+..++..  ..+++|+.
T Consensus       107 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  183 (251)
T 3m19_A          107 TQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQT  183 (251)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCE
Confidence            89999999874 6777776432 2348999999875 4666655 5788889999999884 67777654  23678999


Q ss_pred             EEecCCCCce
Q 037573          277 LKITDVNIFK  286 (357)
Q Consensus       277 L~l~~c~~l~  286 (357)
                      |++++ +.+.
T Consensus       184 L~l~~-N~~~  192 (251)
T 3m19_A          184 ITLFG-NQFD  192 (251)
T ss_dssp             EECCS-CCBC
T ss_pred             EEeeC-Ccee
Confidence            99988 4444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.44  E-value=3.5e-13  Score=113.93  Aligned_cols=129  Identities=15%  Similarity=0.171  Sum_probs=96.3

Q ss_pred             cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      .+..+++|++|++++| .+..++ .+..+++|++|+++++.--...+..+..      +++|+.|++++|......|..+
T Consensus        61 ~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~Ls~n~i~~~~~~~l  132 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSG------LTSLTLLDISHSAHDDSILTKI  132 (197)
T ss_dssp             TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTT------CTTCCEEECCSSBCBGGGHHHH
T ss_pred             HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcC------CCCCCEEEecCCccCcHhHHHH
Confidence            5788999999999998 456665 5889999999999996433334555445      8999999999976444567788


Q ss_pred             CCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ  258 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  258 (357)
                      ..+++|+.|++++|..+..++. ..+  ++|++|++++|. ++.++ .+..+++|++|++++
T Consensus       133 ~~l~~L~~L~L~~n~~i~~~~~l~~l--~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          133 NTLPKVNSIDLSYNGAITDIMPLKTL--PELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             TTCSSCCEEECCSCTBCCCCGGGGGC--SSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECB
T ss_pred             hhCCCCCEEEccCCCCccccHhhcCC--CCCCEEECCCCC-CcChH-HhccCCCCCEEEeeC
Confidence            8899999999998765666653 233  378888887754 55554 566777777777766

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.40  E-value=1.6e-12  Score=116.76  Aligned_cols=168  Identities=18%  Similarity=0.248  Sum_probs=134.1

Q ss_pred             cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC-CC
Q 037573          143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE-RG  221 (357)
Q Consensus       143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~  221 (357)
                      +..+++|++|++++| .+..++. +..      +++|+.|++++| .+..++. +..+++|+.|+++++ .+..++. ..
T Consensus        42 ~~~l~~L~~L~l~~~-~i~~~~~-~~~------l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~  110 (291)
T 1h6t_A           42 QNELNSIDQIIANNS-DIKSVQG-IQY------LPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKD  110 (291)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCTT-GGG------CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTT
T ss_pred             hhhcCcccEEEccCC-CcccChh-Hhc------CCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChhhcc
Confidence            446889999999986 5666654 233      899999999996 4777776 889999999999985 5666654 34


Q ss_pred             CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccE
Q 037573          222 LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKE  301 (357)
Q Consensus       222 ~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~  301 (357)
                      ++  +|++|++++|. ++.+ ..+..+++|++|+++++ .++.++....+++|+.|++++ +.++.+++  +..+++|++
T Consensus       111 l~--~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          111 LK--KLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             CT--TCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCE
T ss_pred             CC--CCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccC-Cccccchh--hcCCCccCE
Confidence            44  99999999864 6666 46889999999999985 677665445578999999999 57777665  689999999


Q ss_pred             EEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          302 LIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       302 L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      |++++  +.+..++. +..+++|++|+++++
T Consensus       183 L~L~~--N~i~~l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          183 LYLSK--NHISDLRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             EECCS--SCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred             EECCC--CcCCCChh-hccCCCCCEEECcCC
Confidence            99998  68888875 457889999999875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.37  E-value=2.1e-12  Score=117.08  Aligned_cols=171  Identities=16%  Similarity=0.181  Sum_probs=122.7

Q ss_pred             cCCCcccEEeeccCcCccccc----cccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcc--
Q 037573          120 QVLCRLKYLELIDCECLVNLP----QALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKC--  192 (357)
Q Consensus       120 ~~l~~L~~L~l~~~~~l~~lp----~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~--  192 (357)
                      ..+++|++|+++++..-...+    ..+..+++|++|+++++. +..++. .+..      +++|++|+++++.....  
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~  186 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRA------FPALTSLDLSDNPGLGERG  186 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCC------CTTCCEEECCSCTTCHHHH
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhcc------CCCCCEEECCCCCCccchh
Confidence            678899999999887443333    234578899999999864 555543 3335      88999999998753321  


Q ss_pred             cc--cccCCCCCccEEEecCCCCCcccCC------CCCCCCCcceEEeccCCcchhh-HhhhccC---CcccceeeccCc
Q 037573          193 LP--HELHKLSRLQQIEIRNCPSLVSFPE------RGLPSTNLTAVCVINCEKLEAL-LNGIHRL---TSHQQLTVEQCP  260 (357)
Q Consensus       193 lp--~~l~~l~~L~~L~l~~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l---~~L~~L~l~~c~  260 (357)
                      ++  ..+..+++|++|++++| .++.++.      ..++  +|++|+++++. ++.+ |..+..+   ++|++|+++++ 
T Consensus       187 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~--~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-  261 (310)
T 4glp_A          187 LMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGV--QPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-  261 (310)
T ss_dssp             HHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTC--CCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-
T ss_pred             hhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCC--CCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-
Confidence            32  22367889999999986 5554443      1234  89999998865 4544 6666665   69999999884 


Q ss_pred             CccccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573          261 GIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       261 ~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      .++.+|... +++|++|++++ +.++.++.  +..+++|++|++++
T Consensus       262 ~l~~lp~~~-~~~L~~L~Ls~-N~l~~~~~--~~~l~~L~~L~L~~  303 (310)
T 4glp_A          262 GLEQVPKGL-PAKLRVLDLSS-NRLNRAPQ--PDELPEVDNLTLDG  303 (310)
T ss_dssp             CCCSCCSCC-CSCCSCEECCS-CCCCSCCC--TTSCCCCSCEECSS
T ss_pred             CCCchhhhh-cCCCCEEECCC-CcCCCCch--hhhCCCccEEECcC
Confidence            677887653 48999999998 67876643  57889999999998

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.36  E-value=2.1e-12  Score=127.37  Aligned_cols=167  Identities=19%  Similarity=0.263  Sum_probs=116.3

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      +..+++|+.|+++++. +..++. +..+++|+.|++++| .+..++. +..      +++|+.|++++| .+..+| .+.
T Consensus        39 ~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~------l~~L~~L~Ls~N-~l~~l~-~l~  106 (605)
T 1m9s_A           39 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTN------LKNLGWLFLDEN-KIKDLS-SLK  106 (605)
T ss_dssp             HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGG------CTTCCEEECCSS-CCCCCT-TST
T ss_pred             hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCC-CCCCChh-hcc------CCCCCEEECcCC-CCCCCh-hhc
Confidence            4456778888887765 566664 777888888888875 4555554 223      788888888886 456655 577


Q ss_pred             CCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573          199 KLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL  277 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  277 (357)
                      .+++|+.|+++++ .+..++. ..++  +|+.|++++|. +..+ ..+..+++|+.|++++| .+..++....+++|+.|
T Consensus       107 ~l~~L~~L~Ls~N-~l~~l~~l~~l~--~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L  180 (605)
T 1m9s_A          107 DLKKLKSLSLEHN-GISDINGLVHLP--QLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNL  180 (605)
T ss_dssp             TCTTCCEEECTTS-CCCCCGGGGGCT--TCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEE
T ss_pred             cCCCCCEEEecCC-CCCCCccccCCC--ccCEEECCCCc-cCCc-hhhcccCCCCEEECcCC-cCCCchhhccCCCCCEE
Confidence            7888888888875 4555543 3334  88888887754 5555 56778888888888875 45555444446788888


Q ss_pred             EecCCCCceecccccccccCCccEEEEec
Q 037573          278 KITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      ++++ +.++.++  .+..+++|+.|++.+
T Consensus       181 ~Ls~-N~i~~l~--~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          181 YLSK-NHISDLR--ALAGLKNLDVLELFS  206 (605)
T ss_dssp             ECCS-SCCCBCG--GGTTCTTCSEEECCS
T ss_pred             ECcC-CCCCCCh--HHccCCCCCEEEccC
Confidence            8888 5666654  367788888888887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.33  E-value=1.6e-13  Score=135.24  Aligned_cols=127  Identities=12%  Similarity=0.024  Sum_probs=57.9

Q ss_pred             CCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc--------CcCccccCC
Q 037573          200 LSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ--------CPGIVAIPE  267 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~--------c~~l~~l~~  267 (357)
                      +++|++|++++|. +.....    ..++  +|++|++.+|..-..++.....+++|++|++.+        |..+.....
T Consensus       288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~--~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          288 CSRLTTLNLSYAT-VQSYDLVKLLCQCP--KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             HTTCCEEECTTCC-CCHHHHHHHHTTCT--TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             hCCCCEEEccCCC-CCHHHHHHHHhcCC--CcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence            4555555555554 321100    1233  566666665521122222233456666666633        222221100


Q ss_pred             C---CCCCCcceEEecCCCCceeccccccc-ccCCccEEEEe-----ccCCCCCcCCCC------CCCCCCcceEeccc
Q 037573          268 N---DYPTNLTILKITDVNIFKSLFQWGLH-RLNSLKELIVN-----GEFPDMISFPQE------EIGSTSLTRLWIRD  331 (357)
Q Consensus       268 ~---~~~~~L~~L~l~~c~~l~~~~~~~l~-~l~~L~~L~l~-----~~c~~l~~l~~~------~~~~~sL~~L~l~~  331 (357)
                      .   ..+++|++|.++ |+.++......+. .+++|++|++.     + |+.+...|..      ...+++|++|++++
T Consensus       365 ~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          365 VSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKA-PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             HHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTC-CCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCC-cccccCCchhhHHHHHHhhCCCccEEeecC
Confidence            0   014566666443 3555532222222 46778888887     5 6666644321      11234566665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.33  E-value=1.6e-12  Score=114.96  Aligned_cols=145  Identities=16%  Similarity=0.227  Sum_probs=70.6

Q ss_pred             cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCC
Q 037573          143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL  222 (357)
Q Consensus       143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~  222 (357)
                      +..+++|++|+++++ .+..++ .+..      +++|+.|+++++ .+..+|. +..+++|+.|+++++ .+..++....
T Consensus        37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~------l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~  105 (263)
T 1xeu_A           37 QKELSGVQNFNGDNS-NIQSLA-GMQF------FTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS  105 (263)
T ss_dssp             HHHHTTCSEEECTTS-CCCCCT-TGGG------CTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC
T ss_pred             hhhcCcCcEEECcCC-Ccccch-HHhh------CCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc
Confidence            444555555555553 344443 1112      455555555553 3444444 555555555555543 3444443111


Q ss_pred             CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEE
Q 037573          223 PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKEL  302 (357)
Q Consensus       223 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L  302 (357)
                        ++|++|++++| .++.++ .+..+++|++|+++++ .++.++....+++|+.|++++ +.++.+  ..+..+++|+.|
T Consensus       106 --~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~l~~l~~L~~L~L~~-N~i~~~--~~l~~l~~L~~L  177 (263)
T 1xeu_A          106 --ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKSIVMLGFLSKLEVLDLHG-NEITNT--GGLTRLKKVNWI  177 (263)
T ss_dssp             --SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCBCGGGGGCTTCCEEECTT-SCCCBC--TTSTTCCCCCEE
T ss_pred             --CcccEEEccCC-ccCCCh-hhcCcccccEEECCCC-cCCCChHHccCCCCCEEECCC-CcCcch--HHhccCCCCCEE
Confidence              25555655553 244443 3555556666666552 444444323345566666655 444444  224555666666


Q ss_pred             EEec
Q 037573          303 IVNG  306 (357)
Q Consensus       303 ~l~~  306 (357)
                      ++++
T Consensus       178 ~l~~  181 (263)
T 1xeu_A          178 DLTG  181 (263)
T ss_dssp             EEEE
T ss_pred             eCCC
Confidence            6655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.33  E-value=1.4e-13  Score=135.66  Aligned_cols=152  Identities=11%  Similarity=0.108  Sum_probs=84.8

Q ss_pred             cccccEEEeeC----------CCCCcc--cccccCCCCCccEEEecCCCCCcccCC----CCCCCCCcceEEecc---CC
Q 037573          176 ITSFENIMVNG----------CDNLKC--LPHELHKLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVIN---CE  236 (357)
Q Consensus       176 l~~L~~L~l~~----------c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~---c~  236 (357)
                      +++|++|++++          |..+..  ++.....+++|++|+++ |..+.....    ..++  +|++|++.+   |+
T Consensus       341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~--~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLK--NLCDFRLVLLDREE  417 (592)
T ss_dssp             CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCC--SCCEEEEEECSCCS
T ss_pred             CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCC--CCcEEEEeecCCCc
Confidence            67788888874          555442  22223346777777773 444432211    1133  777787763   44


Q ss_pred             cchh------hHhhhccCCcccceeeccCcC-cccc--CC-CCCCCCcceEEecCCCCcee-cccccccccCCccEEEEe
Q 037573          237 KLEA------LLNGIHRLTSHQQLTVEQCPG-IVAI--PE-NDYPTNLTILKITDVNIFKS-LFQWGLHRLNSLKELIVN  305 (357)
Q Consensus       237 ~l~~------l~~~~~~l~~L~~L~l~~c~~-l~~l--~~-~~~~~~L~~L~l~~c~~l~~-~~~~~l~~l~~L~~L~l~  305 (357)
                      .++.      ++..+..+++|++|++++|.. +..-  .. ...+++|++|++++| .++. .....+..+++|++|+++
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeecc
Confidence            5553      334456677788888866543 2110  00 012567888888774 3542 112224567788888888


Q ss_pred             ccCCCCCc--CCCCCCCCCCcceEecccCc
Q 037573          306 GEFPDMIS--FPQEEIGSTSLTRLWIRDFQ  333 (357)
Q Consensus       306 ~~c~~l~~--l~~~~~~~~sL~~L~l~~c~  333 (357)
                      + |+ +..  ++.....+++|++|++++|+
T Consensus       497 ~-n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          497 G-CC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             S-CC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             C-CC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            8 76 432  22222245778888888775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.32  E-value=6.9e-12  Score=123.67  Aligned_cols=170  Identities=17%  Similarity=0.221  Sum_probs=133.8

Q ss_pred             cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCC
Q 037573          143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL  222 (357)
Q Consensus       143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~  222 (357)
                      +..+++|+.|+++++ .+..++. +..      +++|+.|++++| .+..+|. +..+++|+.|++++| .+..++. ..
T Consensus        39 ~~~L~~L~~L~l~~n-~i~~l~~-l~~------l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-l~  106 (605)
T 1m9s_A           39 QNELNSIDQIIANNS-DIKSVQG-IQY------LPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS-LK  106 (605)
T ss_dssp             HHHHTTCCCCBCTTC-CCCCCTT-GGG------CTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCTT-ST
T ss_pred             hhcCCCCCEEECcCC-CCCCChH-Hcc------CCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCChh-hc
Confidence            456889999999985 4666653 333      899999999996 4677776 889999999999986 5666653 22


Q ss_pred             CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEE
Q 037573          223 PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKEL  302 (357)
Q Consensus       223 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L  302 (357)
                      .+++|++|++++|. +..+ ..+..+++|+.|++++| .+..++....+++|+.|++++ +.++.+++  +..+++|++|
T Consensus       107 ~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L  180 (605)
T 1m9s_A          107 DLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNL  180 (605)
T ss_dssp             TCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEE
T ss_pred             cCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEE
Confidence            23499999998865 6666 46889999999999995 677665445578999999999 56776655  6899999999


Q ss_pred             EEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573          303 IVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ  333 (357)
Q Consensus       303 ~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~  333 (357)
                      +|++  +.+..++. +..+++|+.|++++++
T Consensus       181 ~Ls~--N~i~~l~~-l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          181 YLSK--NHISDLRA-LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCS--SCCCBCGG-GTTCTTCSEEECCSEE
T ss_pred             ECcC--CCCCCChH-HccCCCCCEEEccCCc
Confidence            9998  57888764 4478899999998763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.31  E-value=2.1e-13  Score=134.32  Aligned_cols=123  Identities=13%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             CCcccEEeeccCcCccccccccC-CCCCcCEEeecCCCcchh--ccccccccccccccccccEEEeeCCCCCc-----cc
Q 037573          122 LCRLKYLELIDCECLVNLPQALH-CLSSLTEITVAGCTKLVS--FLELSSVAEMFAIITSFENIMVNGCDNLK-----CL  193 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~i~~c~~l~~--~~~~~~~L~~L~~l~~L~~L~l~~c~~l~-----~l  193 (357)
                      +++|++|++++|..-...+..+. .+++|++|++.+|..+..  ++....+      +++|++|++++|. +.     .+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~------~~~L~~L~L~~~~-i~~~~~~~l  176 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT------CRNLKELDLRESD-VDDVSGHWL  176 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH------CTTCCEEECTTCE-EECCCGGGG
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh------CCCCCEEeCcCCc-cCCcchHHH
Confidence            45555555555542222222222 355555555555543332  2221112      5555555555543 11     12


Q ss_pred             ccccCCCCCccEEEecCCCCCcccCC-------CCCCCCCcceEEeccCCcchhhHhhhccCCccccee
Q 037573          194 PHELHKLSRLQQIEIRNCPSLVSFPE-------RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLT  255 (357)
Q Consensus       194 p~~l~~l~~L~~L~l~~c~~l~~l~~-------~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~  255 (357)
                      +.....+++|+.|++++|.  ..+..       ..++  +|++|++++|..++.++..+..+++|++|+
T Consensus       177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~--~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCP--NLKSLKLNRAVPLEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCT--TCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred             HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCC--CCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence            2222234555555555543  11110       1122  555555555544444544455555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.31  E-value=3.3e-13  Score=126.14  Aligned_cols=182  Identities=13%  Similarity=0.071  Sum_probs=120.6

Q ss_pred             ccCCCcccEEeeccCcCcc----ccccccCCCCCcCEEeecCCCcchhcc-cccccccccccc---------ccccEEEe
Q 037573          119 IQVLCRLKYLELIDCECLV----NLPQALHCLSSLTEITVAGCTKLVSFL-ELSSVAEMFAII---------TSFENIMV  184 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~i~~c~~l~~~~-~~~~~L~~L~~l---------~~L~~L~l  184 (357)
                      +..+++|++|+++++..-.    .+|..+..+++|++|++++|. +...+ ..+..  .+..+         ++|++|++
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~--~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIAR--ALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHH--HHHHHHHHHHHHTCCCCCEEEC
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHH--HHHHHhhhhhcccCCCCcEEEC
Confidence            4667899999999886433    367677888999999999864 33211 11110  00013         78999999


Q ss_pred             eCCCCC-cccc---cccCCCCCccEEEecCCCCCc------ccCCCCCCCCCcceEEeccCCcc----hhhHhhhccCCc
Q 037573          185 NGCDNL-KCLP---HELHKLSRLQQIEIRNCPSLV------SFPERGLPSTNLTAVCVINCEKL----EALLNGIHRLTS  250 (357)
Q Consensus       185 ~~c~~l-~~lp---~~l~~l~~L~~L~l~~c~~l~------~l~~~~~~~~~L~~L~l~~c~~l----~~l~~~~~~l~~  250 (357)
                      ++|..- ..+|   ..+..+++|+.|++++| .+.      .++.....+++|++|++++|.--    ..+|..+..+++
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~  245 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  245 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence            987532 2344   45667889999999986 444      12211122348999999887631    567778888999


Q ss_pred             ccceeeccCcCcccc-----CCC---CCCCCcceEEecCCCCcee-----cccccccccCCccEEEEec
Q 037573          251 HQQLTVEQCPGIVAI-----PEN---DYPTNLTILKITDVNIFKS-----LFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       251 L~~L~l~~c~~l~~l-----~~~---~~~~~L~~L~l~~c~~l~~-----~~~~~l~~l~~L~~L~l~~  306 (357)
                      |++|++++|. +...     +..   +.+++|++|++++ +.++.     ++......+++|++|++++
T Consensus       246 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          246 LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             cCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence            9999998864 4432     221   2267899999998 55664     5443225679999999988

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.29  E-value=4.7e-11  Score=118.14  Aligned_cols=198  Identities=16%  Similarity=0.044  Sum_probs=114.5

Q ss_pred             CCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchh---ccccccccccccccccccEEEeeCCCCCccccccc
Q 037573          121 VLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVS---FLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~---~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      .+..|+.+.+.++.. ...+. ...+++|+.+++++. .+..   .+.....      +.+|+.+++..+. ...++..+
T Consensus       347 ~l~~L~~l~l~~n~~-~~~~~-~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~------~~~L~~L~~~~~~-~~~~~~~~  416 (635)
T 4g8a_A          347 KLKSLKRLTFTSNKG-GNAFS-EVDLPSLEFLDLSRN-GLSFKGCCSQSDFG------TISLKYLDLSFNG-VITMSSNF  416 (635)
T ss_dssp             BCTTCCEEEEESCCS-CCBCC-CCBCTTCCEEECCSS-CCBEEEECCHHHHS------CSCCCEEECCSCS-EEEECSCC
T ss_pred             cchhhhhcccccccC-CCCcc-cccccccccchhhcc-ccccccccccchhh------hhhhhhhhccccc-cccccccc
Confidence            456777777766542 22222 346777888877763 2221   1212223      5667777776643 34445556


Q ss_pred             CCCCCccEEEecCCCCCcccCCCC-CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCc
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPERG-LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNL  274 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L  274 (357)
                      ..+++|+.+++.++......+... ..+++++.++++.+..-...+..+..+++|+.|+++++.....++..  ..+++|
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence            667777777776654333333211 12236777777665433334455666777777777775544433222  335677


Q ss_pred             ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEeccc
Q 037573          275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRD  331 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~  331 (357)
                      +.|++++ +.++.+++..+..+++|++|++++  +++..++.. +..+++|++|++++
T Consensus       497 ~~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~--N~l~~l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          497 TFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSH--NNFFSLDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             CEEECTT-SCCCEECTTTTTTCTTCCEEECTT--SCCCBCCCGGGTTCTTCCEEECTT
T ss_pred             CEEECCC-CccCCcChHHHcCCCCCCEEECCC--CcCCCCChhHHhCCCCCCEEECCC
Confidence            7777777 456666655567777777777776  566666543 33466777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.29  E-value=9.8e-13  Score=129.58  Aligned_cols=178  Identities=11%  Similarity=0.039  Sum_probs=94.2

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      +..+++|+.|++++|. +..+|..+..+++|++|.++++......+..   ...+..+++|+.|+++++ ....+|..+.
T Consensus       216 ~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~-~~~~l~~~~~  290 (592)
T 3ogk_B          216 ARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEK---YMNLVFPRKLCRLGLSYM-GPNEMPILFP  290 (592)
T ss_dssp             HHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTS---SSCCCCCTTCCEEEETTC-CTTTGGGGGG
T ss_pred             HhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHH---HHHhhccccccccCcccc-chhHHHHHHh
Confidence            4457788888888865 4456666777788888877653322111111   011111566777777663 3455566666


Q ss_pred             CCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc----------CcCccc
Q 037573          199 KLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ----------CPGIVA  264 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~----------c~~l~~  264 (357)
                      .+++|++|++++|. +.....    ..++  +|++|++.++..-..++.....+++|++|++++          |+.++.
T Consensus       291 ~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~--~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          291 FAAQIRKLDLLYAL-LETEDHCTLIQKCP--NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             GGGGCCEEEETTCC-CCHHHHHHHHTTCT--TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             hcCCCcEEecCCCc-CCHHHHHHHHHhCc--CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence            67777777777765 321111    2334  677777764322233333445566677777763          555442


Q ss_pred             cC--C-CCCCCCcceEEecCCCCceecccccccc-cCCccEEEEe
Q 037573          265 IP--E-NDYPTNLTILKITDVNIFKSLFQWGLHR-LNSLKELIVN  305 (357)
Q Consensus       265 l~--~-~~~~~~L~~L~l~~c~~l~~~~~~~l~~-l~~L~~L~l~  305 (357)
                      ..  . ...+++|++|++ +|+.++......+.. +++|++|++.
T Consensus       368 ~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             HHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            11  0 011456666666 335554322222332 5666666665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=3.9e-13  Score=125.60  Aligned_cols=102  Identities=15%  Similarity=0.097  Sum_probs=48.1

Q ss_pred             CcceEEeccCCcch------hhHhhhccCCcccceeeccCcCc-----cccCCC-CCCCCcceEEecCCCCceec----c
Q 037573          226 NLTAVCVINCEKLE------ALLNGIHRLTSHQQLTVEQCPGI-----VAIPEN-DYPTNLTILKITDVNIFKSL----F  289 (357)
Q Consensus       226 ~L~~L~l~~c~~l~------~l~~~~~~l~~L~~L~l~~c~~l-----~~l~~~-~~~~~L~~L~l~~c~~l~~~----~  289 (357)
                      +|++|++++|. ++      .++..+..+++|++|++++|. +     ..++.. ..+++|++|++++| .++..    .
T Consensus       188 ~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l  264 (386)
T 2ca6_A          188 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAV  264 (386)
T ss_dssp             TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHH
T ss_pred             CcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHH
Confidence            56666666543 22      122255556666666666543 3     222221 12456666666663 34321    0


Q ss_pred             ccccc--ccCCccEEEEeccCCCCCc-----CCCCC-CCCCCcceEecccC
Q 037573          290 QWGLH--RLNSLKELIVNGEFPDMIS-----FPQEE-IGSTSLTRLWIRDF  332 (357)
Q Consensus       290 ~~~l~--~l~~L~~L~l~~~c~~l~~-----l~~~~-~~~~sL~~L~l~~c  332 (357)
                      ...+.  .+++|++|++++  +.+..     +|..+ ..+++|++|+++++
T Consensus       265 ~~~l~~~~~~~L~~L~L~~--n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQY--NEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCS--SCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHhhccCCCeEEEECcC--CcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            11122  256666666665  34443     44433 12455666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.28  E-value=2.8e-14  Score=139.81  Aligned_cols=193  Identities=14%  Similarity=0.048  Sum_probs=127.5

Q ss_pred             cCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcc-------------hhccccccccccccccccccEEE-ee
Q 037573          120 QVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKL-------------VSFLELSSVAEMFAIITSFENIM-VN  185 (357)
Q Consensus       120 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l-------------~~~~~~~~~L~~L~~l~~L~~L~-l~  185 (357)
                      ..+++|+.|+++++. ++.+|.+++.+++|+.|+++++..+             ...|..+..      +++|+.|+ ++
T Consensus       346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~------l~~L~~L~~l~  418 (567)
T 1dce_A          346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY------FSTLKAVDPMR  418 (567)
T ss_dssp             STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH------HHHHHHHCGGG
T ss_pred             ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH------HHhcccCcchh
Confidence            457888889998865 6788988888999998888654311             122222223      45555555 22


Q ss_pred             CCCCCccccc------ccCC--CCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeec
Q 037573          186 GCDNLKCLPH------ELHK--LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVE  257 (357)
Q Consensus       186 ~c~~l~~lp~------~l~~--l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~  257 (357)
                      . ..+..++.      .+..  ...|+.|+++++ .++.+|. ...+++|+.|+++++ .++.+|..++.+++|++|+++
T Consensus       419 ~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls  494 (567)
T 1dce_A          419 A-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQAS  494 (567)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECC
T ss_pred             h-cccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECC
Confidence            1 11111111      0111  135788888874 6677775 223348899999875 467888888889999999998


Q ss_pred             cCcCccccCCCCCCCCcceEEecCCCCceecc-cccccccCCccEEEEeccCCCCCcCCCCCC----CCCCcceE
Q 037573          258 QCPGIVAIPENDYPTNLTILKITDVNIFKSLF-QWGLHRLNSLKELIVNGEFPDMISFPQEEI----GSTSLTRL  327 (357)
Q Consensus       258 ~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~----~~~sL~~L  327 (357)
                      + +.++.+|..+.+++|+.|++++ +.++.+. +..+..+++|+.|++++  +.+..+|....    .+|+|+.|
T Consensus       495 ~-N~l~~lp~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~--N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          495 D-NALENVDGVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG--NSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             S-SCCCCCGGGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT--SGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             C-CCCCCCcccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC--CcCCCCccHHHHHHHHCcccCcc
Confidence            8 4677777445578899999988 6777664 44578889999999988  66777665432    14555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.27  E-value=4e-11  Score=117.15  Aligned_cols=162  Identities=21%  Similarity=0.266  Sum_probs=127.1

Q ss_pred             CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573          122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS  201 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~  201 (357)
                      +++|++|+++++. +..+|   ..+++|++|+++++ .+..+|. +        ..+|+.|+++++ .+..+|.   .++
T Consensus        79 ~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l--------~~~L~~L~Ls~N-~l~~lp~---~l~  140 (571)
T 3cvr_A           79 PPQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-L--------PASLKHLDVDNN-QLTMLPE---LPA  140 (571)
T ss_dssp             CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-C--------CTTCCEEECCSS-CCSCCCC---CCT
T ss_pred             cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-h--------hcCCCEEECCCC-cCCCCCC---cCc
Confidence            4789999999985 67888   46899999999985 6777777 3        348999999996 5777887   689


Q ss_pred             CccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCc-------
Q 037573          202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNL-------  274 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L-------  274 (357)
                      +|+.|+++++ .++.+|. .++  +|++|++++|. ++.+|. +.  ++|++|+++++ .++.+|.  +..+|       
T Consensus       141 ~L~~L~Ls~N-~l~~lp~-~l~--~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~L  209 (571)
T 3cvr_A          141 LLEYINADNN-QLTMLPE-LPT--SLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTN-LLESLPA--VPVRNHHSEETE  209 (571)
T ss_dssp             TCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSC-CSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC--------CC
T ss_pred             cccEEeCCCC-ccCcCCC-cCC--CcCEEECCCCC-CCCcch-hh--CCCCEEECcCC-CCCchhh--HHHhhhcccccc
Confidence            9999999985 6777876 444  99999998864 777877 55  89999999984 7888887  44578       


Q ss_pred             ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCC
Q 037573          275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFP  315 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~  315 (357)
                      +.|++++ |.++.++.. +..+++|+.|++++ ++--+.+|
T Consensus       210 ~~L~Ls~-N~l~~lp~~-l~~l~~L~~L~L~~-N~l~~~~p  247 (571)
T 3cvr_A          210 IFFRCRE-NRITHIPEN-ILSLDPTCTIILED-NPLSSRIR  247 (571)
T ss_dssp             EEEECCS-SCCCCCCGG-GGGSCTTEEEECCS-SSCCHHHH
T ss_pred             eEEecCC-CcceecCHH-HhcCCCCCEEEeeC-CcCCCcCH
Confidence            9999999 788888765 66799999999998 54333333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.22  E-value=1e-10  Score=101.18  Aligned_cols=148  Identities=17%  Similarity=0.265  Sum_probs=103.9

Q ss_pred             cccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccc-cCCCC
Q 037573          124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHKLS  201 (357)
Q Consensus       124 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~l~  201 (357)
                      ..+.++.++. .++.+|..+  .++|++|+++++ .+..++. .+..      +++|+.|+++++ .+..+|.. +..++
T Consensus        20 s~~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n-~i~~~~~~~~~~------l~~L~~L~L~~N-~l~~i~~~~~~~l~   88 (229)
T 3e6j_A           20 SGTTVDCRSK-RHASVPAGI--PTNAQILYLHDN-QITKLEPGVFDS------LINLKELYLGSN-QLGALPVGVFDSLT   88 (229)
T ss_dssp             ETTEEECTTS-CCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTT------CTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             eCCEeEccCC-CcCccCCCC--CCCCCEEEcCCC-ccCccCHHHhhC------ccCCcEEECCCC-CCCCcChhhcccCC
Confidence            4556777664 467788654  378999999885 4555533 3335      788999999885 46777654 57788


Q ss_pred             CccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEE
Q 037573          202 RLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILK  278 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~  278 (357)
                      +|+.|+++++ .+..++...+ .+++|++|+++++ .++.+|..+..+++|++|++++ +.+..++..  ..+++|+.|+
T Consensus        89 ~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           89 QLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEE
Confidence            8999998874 6777765332 2348888888774 4778888888888888888887 467777654  2367888888


Q ss_pred             ecCCCCce
Q 037573          279 ITDVNIFK  286 (357)
Q Consensus       279 l~~c~~l~  286 (357)
                      +++ |.+.
T Consensus       166 l~~-N~~~  172 (229)
T 3e6j_A          166 LFG-NPWD  172 (229)
T ss_dssp             CTT-SCBC
T ss_pred             eeC-CCcc
Confidence            887 4443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.21  E-value=1.8e-12  Score=123.64  Aligned_cols=209  Identities=18%  Similarity=0.201  Sum_probs=115.7

Q ss_pred             cccccCCCcccEEeeccCcCccc----cccc-cCCCCCcCEEeecCCCcchh-----ccccc---cccccccc-------
Q 037573          116 TSVIQVLCRLKYLELIDCECLVN----LPQA-LHCLSSLTEITVAGCTKLVS-----FLELS---SVAEMFAI-------  175 (357)
Q Consensus       116 ~~~~~~l~~L~~L~l~~~~~l~~----lp~~-~~~l~~L~~L~i~~c~~l~~-----~~~~~---~~L~~L~~-------  175 (357)
                      +..+..+++|++|+++++..-..    +... ....++|++|++++|. +..     ++...   .+|+.|++       
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence            34467788999999988763211    1111 2235568888887763 221     12211   13333332       


Q ss_pred             -------------cccccEEEeeCCCCCcc-----cccccCCCCCccEEEecCCCCCcccC-----CC-CCCCCCcceEE
Q 037573          176 -------------ITSFENIMVNGCDNLKC-----LPHELHKLSRLQQIEIRNCPSLVSFP-----ER-GLPSTNLTAVC  231 (357)
Q Consensus       176 -------------l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~-----~~-~~~~~~L~~L~  231 (357)
                                   .++|+.|++++|. +..     ++..+..+++|++|+++++ .+....     .. ..+.++|++|+
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEE
Confidence                         2377777777764 332     4666667788888888876 343321     10 00124888999


Q ss_pred             eccCCcchh-----hHhhhccCCcccceeeccCcCcccc-----CCC--CCCCCcceEEecCCCCceecc----cccccc
Q 037573          232 VINCEKLEA-----LLNGIHRLTSHQQLTVEQCPGIVAI-----PEN--DYPTNLTILKITDVNIFKSLF----QWGLHR  295 (357)
Q Consensus       232 l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l-----~~~--~~~~~L~~L~l~~c~~l~~~~----~~~l~~  295 (357)
                      +++|. ++.     ++..+..+++|++|+++++ .+...     ...  ...++|++|++++|. ++...    ...+..
T Consensus       263 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          263 IWECG-ITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQ  339 (461)
T ss_dssp             CTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHH
T ss_pred             CcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhh
Confidence            88874 444     6677777888899988885 34321     110  112577777777743 44221    112445


Q ss_pred             cCCccEEEEeccCCCCCcCC-----CCCC-CCCCcceEecccC
Q 037573          296 LNSLKELIVNGEFPDMISFP-----QEEI-GSTSLTRLWIRDF  332 (357)
Q Consensus       296 l~~L~~L~l~~~c~~l~~l~-----~~~~-~~~sL~~L~l~~c  332 (357)
                      +++|++|++++ | .+...+     .... ..++|++|++++|
T Consensus       340 ~~~L~~L~Ls~-n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          340 NRFLLELQISN-N-RLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             CSSCCEEECCS-S-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCCccEEEccC-C-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            67777777776 3 443321     1000 1346666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.21  E-value=1.6e-10  Score=99.29  Aligned_cols=143  Identities=15%  Similarity=0.227  Sum_probs=92.1

Q ss_pred             CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-ccCCCCCccEEEecCCCCCcccCC-CCCCCCCc
Q 037573          150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNL  227 (357)
Q Consensus       150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L  227 (357)
                      +.++.++ ..+..+|..+        .++|+.|+++++ .+..+|. .+..+++|+.|+++++ .+..++. ....+++|
T Consensus        14 ~~v~c~~-~~l~~iP~~l--------~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B           14 NIVDCRG-KGLTEIPTNL--------PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSL   82 (220)
T ss_dssp             TEEECTT-SCCSSCCSSC--------CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSC
T ss_pred             CEEEcCC-CCcCcCCCcc--------CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCC
Confidence            4566665 4566777653        457888888875 4566654 5667788888888874 4555533 22223477


Q ss_pred             ceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEE
Q 037573          228 TAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIV  304 (357)
Q Consensus       228 ~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l  304 (357)
                      ++|+++++ .++.+|.. +..+++|++|++++ +.+..++..  ..+++|+.|++++ +.++.+++..+..+++|++|++
T Consensus        83 ~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           83 NSLVLYGN-KITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCC-cCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEe
Confidence            88888764 45666544 46677788888777 356655443  2356777777777 6676666555667777777777


Q ss_pred             ec
Q 037573          305 NG  306 (357)
Q Consensus       305 ~~  306 (357)
                      .+
T Consensus       160 ~~  161 (220)
T 2v9t_B          160 AQ  161 (220)
T ss_dssp             CS
T ss_pred             CC
Confidence            76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.20  E-value=7.8e-11  Score=104.12  Aligned_cols=150  Identities=15%  Similarity=0.166  Sum_probs=116.1

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      +..+++|++|+++++. +..++ .+..+++|++|+++++ .+..++. +..      +++|+.|+++++ .+..+|... 
T Consensus        37 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~------l~~L~~L~L~~N-~l~~l~~~~-  104 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKD------LTKLEELSVNRN-RLKNLNGIP-  104 (263)
T ss_dssp             HHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTT------CSSCCEEECCSS-CCSCCTTCC-
T ss_pred             hhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hcc------CCCCCEEECCCC-ccCCcCccc-
Confidence            5668999999999984 67787 5888999999999985 5777766 444      899999999996 567776533 


Q ss_pred             CCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573          199 KLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL  277 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  277 (357)
                      . ++|+.|+++++ .+..++. ..++  +|++|+++++. ++.++ .+..+++|++|+++++ .+..++....+++|+.|
T Consensus       105 ~-~~L~~L~L~~N-~l~~~~~l~~l~--~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L  177 (263)
T 1xeu_A          105 S-ACLSRLFLDNN-ELRDTDSLIHLK--NLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWI  177 (263)
T ss_dssp             C-SSCCEEECCSS-CCSBSGGGTTCT--TCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEE
T ss_pred             c-CcccEEEccCC-ccCCChhhcCcc--cccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcchHHhccCCCCCEE
Confidence            3 89999999985 6666653 3444  99999998854 77775 6888999999999984 67766444557899999


Q ss_pred             EecCCCCceec
Q 037573          278 KITDVNIFKSL  288 (357)
Q Consensus       278 ~l~~c~~l~~~  288 (357)
                      ++++ +.+...
T Consensus       178 ~l~~-N~~~~~  187 (263)
T 1xeu_A          178 DLTG-QKCVNE  187 (263)
T ss_dssp             EEEE-EEEECC
T ss_pred             eCCC-CcccCC
Confidence            9998 555533

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.19  E-value=7.6e-11  Score=109.10  Aligned_cols=166  Identities=17%  Similarity=0.229  Sum_probs=88.4

Q ss_pred             cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccc--ccccccccccccEEEeeCCCCCcccc-cccCCCCC
Q 037573          126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS--VAEMFAIITSFENIMVNGCDNLKCLP-HELHKLSR  202 (357)
Q Consensus       126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~--~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~  202 (357)
                      +.+++++. .+..+|..+  .+.++.|++++ ..+..++...+  .      +++|+.|+++++ .+..++ ..+..+++
T Consensus        21 ~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~-N~l~~l~~~~~~~~------l~~L~~L~L~~N-~i~~i~~~~~~~l~~   89 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQSL--PSYTALLDLSH-NNLSRLRAEWTPTR------LTNLHSLLLSHN-HLNFISSEAFVPVPN   89 (361)
T ss_dssp             TEEECCSS-CCSSCCSSC--CTTCSEEECCS-SCCCEECTTSSSSC------CTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             CEEEeCCC-CcCccCccC--CCCCCEEECCC-CCCCccChhhhhhc------ccccCEEECCCC-cCCccChhhccCCCC
Confidence            34455443 345555433  23466666666 34555544332  3      566666666664 344444 33556666


Q ss_pred             ccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCC-----CCCCcc
Q 037573          203 LQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEND-----YPTNLT  275 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~-----~~~~L~  275 (357)
                      |+.|+++++ .+..++...+ .+++|++|+++++. +..+ +..+..+++|++|++++ +.+..+|...     .+++|+
T Consensus        90 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           90 LRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCC
T ss_pred             CCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCC
Confidence            666666653 4555544221 12366666666643 3333 44566666666666666 3555555432     256666


Q ss_pred             eEEecCCCCceecccccccccCC--ccEEEEec
Q 037573          276 ILKITDVNIFKSLFQWGLHRLNS--LKELIVNG  306 (357)
Q Consensus       276 ~L~l~~c~~l~~~~~~~l~~l~~--L~~L~l~~  306 (357)
                      .|++++ +.++.++...+..++.  ++.|++.+
T Consensus       167 ~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          167 LLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             EEECCS-SCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             EEECCC-CCCCccCHHHhhhccHhhcceEEecC
Confidence            667666 5566555444555554  35666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.18  E-value=2.5e-10  Score=98.03  Aligned_cols=142  Identities=11%  Similarity=0.162  Sum_probs=73.3

Q ss_pred             cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-c-ccccccccccccccEEEeeCCCCCccccc-ccCCCCC
Q 037573          126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-L-SSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLSR  202 (357)
Q Consensus       126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~  202 (357)
                      +.++++++. ++.+|..+  .+.+++|+++++ .+..++. . +..      +++|+.|+++++ .+..++. .+..+++
T Consensus        14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~------l~~L~~L~L~~N-~i~~i~~~~~~~l~~   82 (220)
T 2v70_A           14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNN-EFTVLEATGIFKK------LPQLRKINFSNN-KITDIEEGAFEGASG   82 (220)
T ss_dssp             TEEECCSSC-CSSCCSCC--CTTCSEEECCSS-CCCEECCCCCGGG------CTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             CEeEeCCCC-cccCccCC--CCCCCEEEcCCC-cCCccCchhhhcc------CCCCCEEECCCC-cCCEECHHHhCCCCC
Confidence            456666543 55666543  234567777763 4554432 1 223      666777777664 3455543 4566666


Q ss_pred             ccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCCCcceEE
Q 037573          203 LQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILK  278 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~  278 (357)
                      |+.|+++++ .+..++...+ .+++|++|+++++. ++.+ |..+..+++|++|++++ +.++.++..  ..+++|++|+
T Consensus        83 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           83 VNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEE
Confidence            666666653 4444443211 12266666665543 3333 34455556666666655 344444222  2245555666


Q ss_pred             ecC
Q 037573          279 ITD  281 (357)
Q Consensus       279 l~~  281 (357)
                      +++
T Consensus       160 L~~  162 (220)
T 2v70_A          160 LLA  162 (220)
T ss_dssp             CCS
T ss_pred             ecC
Confidence            655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=1e-10  Score=95.84  Aligned_cols=134  Identities=15%  Similarity=0.152  Sum_probs=94.9

Q ss_pred             CCcccEEeeccCcCc-cccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcc-cccccCC
Q 037573          122 LCRLKYLELIDCECL-VNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKC-LPHELHK  199 (357)
Q Consensus       122 l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~-lp~~l~~  199 (357)
                      .++|+.|++++|..- ..+|..+..+++|++|++++|. +..+ ..+..      +++|+.|++++|. +.. +|..+..
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~------l~~L~~L~Ls~N~-l~~~~~~~~~~   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPK------LPKLKKLELSENR-IFGGLDMLAEK   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCC------CSSCCEEEEESCC-CCSCCCHHHHH
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhcc------CCCCCEEECcCCc-CchHHHHHHhh
Confidence            478999999988632 2688777888999999999864 6555 33334      8889999999865 444 6666666


Q ss_pred             CCCccEEEecCCCCCcccC--CCCCCCCCcceEEeccCCcchhhHh----hhccCCcccceeeccCcCccccCC
Q 037573          200 LSRLQQIEIRNCPSLVSFP--ERGLPSTNLTAVCVINCEKLEALLN----GIHRLTSHQQLTVEQCPGIVAIPE  267 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~c~~l~~l~~  267 (357)
                      +++|+.|+++++ .+..++  .....+++|++|+++++. +..+|.    .+..+++|++|++++| ....+|.
T Consensus        94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  164 (168)
T 2ell_A           94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD  164 (168)
T ss_dssp             CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred             CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence            889999999875 566654  211223488888888754 566654    6778888888888886 3444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.16  E-value=5e-10  Score=95.08  Aligned_cols=160  Identities=22%  Similarity=0.223  Sum_probs=115.0

Q ss_pred             CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc-cCCCCCccEEEecCCCCCcccCCCCC-CCCCc
Q 037573          150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHKLSRLQQIEIRNCPSLVSFPERGL-PSTNL  227 (357)
Q Consensus       150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L  227 (357)
                      +.++.++ ..+..+|...        .++|+.|+++++ .+..+|.. +..+++|+.|+++++ .++.++...+ .+++|
T Consensus        10 ~~v~c~~-~~l~~~p~~~--------~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L   78 (208)
T 2o6s_A           10 TTVECYS-QGRTSVPTGI--------PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSL   78 (208)
T ss_dssp             TEEECCS-SCCSSCCSCC--------CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CEEEecC-CCccCCCCCC--------CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCc
Confidence            4555555 4566677554        568999999986 46666654 678999999999984 6777776432 23599


Q ss_pred             ceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEE
Q 037573          228 TAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIV  304 (357)
Q Consensus       228 ~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l  304 (357)
                      ++|+++++. ++.++. .+..+++|++|+++++ .++.++..  ..+++|++|++++ +.++.++...+..+++|++|++
T Consensus        79 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           79 TYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCc-CCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEe
Confidence            999998864 666654 4688999999999884 67777764  3378999999998 6787777666778899999999


Q ss_pred             eccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          305 NGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       305 ~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      .+ ++-..       .+++|++|+++.
T Consensus       156 ~~-N~~~~-------~~~~l~~L~~~~  174 (208)
T 2o6s_A          156 HD-NPWDC-------TCPGIRYLSEWI  174 (208)
T ss_dssp             CS-CCBCC-------CTTTTHHHHHHH
T ss_pred             cC-CCeec-------CCCCHHHHHHHH
Confidence            98 53221       344566665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.16  E-value=5.5e-10  Score=94.83  Aligned_cols=171  Identities=19%  Similarity=0.229  Sum_probs=125.0

Q ss_pred             cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCcccccc-cCCCCCc
Q 037573          126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPHE-LHKLSRL  203 (357)
Q Consensus       126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L  203 (357)
                      +.++.++. .+..+|..+  .++|++|+++++ .+..++... ..      +++|+.|+++++ .+..+|.. +..+++|
T Consensus        10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~l~~n-~l~~~~~~~~~~l~~L   78 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDE------LTSLTQLYLGGN-KLQSLPNGVFNKLTSL   78 (208)
T ss_dssp             TEEECCSS-CCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTT------CTTCSEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CEEEecCC-CccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcc------cccCcEEECCCC-ccCccChhhcCCCCCc
Confidence            45555553 356677544  568999999995 566676643 35      899999999986 56777654 5789999


Q ss_pred             cEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEEe
Q 037573          204 QQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKI  279 (357)
Q Consensus       204 ~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l  279 (357)
                      ++|+++++ .+..++...+ .+++|++|+++++. ++.++. .+..+++|++|+++++ .++.++..  ..+++|++|++
T Consensus        79 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           79 TYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCC-cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEe
Confidence            99999985 6677776332 23599999998854 666655 4688999999999984 67777765  33789999999


Q ss_pred             cCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC
Q 037573          280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI  319 (357)
Q Consensus       280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~  319 (357)
                      ++ +.+.       ..+++|+.|++.. +..-..+|..++
T Consensus       156 ~~-N~~~-------~~~~~l~~L~~~~-n~~~g~ip~~~~  186 (208)
T 2o6s_A          156 HD-NPWD-------CTCPGIRYLSEWI-NKHSGVVRNSAG  186 (208)
T ss_dssp             CS-CCBC-------CCTTTTHHHHHHH-HHCTTTBBCTTS
T ss_pred             cC-CCee-------cCCCCHHHHHHHH-HhCCceeeccCc
Confidence            98 4332       4677888888887 555556776554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.13  E-value=5.6e-10  Score=95.86  Aligned_cols=146  Identities=14%  Similarity=0.222  Sum_probs=111.6

Q ss_pred             cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCccc-ccccCCCCCc
Q 037573          126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCL-PHELHKLSRL  203 (357)
Q Consensus       126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L  203 (357)
                      +.++.++. .++.+|..+.  ++|+.|++++ ..+..++.. +..      +++|+.|+++++. +..+ |..+..+++|
T Consensus        14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~-n~i~~i~~~~~~~------l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQ-NTIKVIPPGAFSP------YKKLRRIDLSNNQ-ISELAPDAFQGLRSL   82 (220)
T ss_dssp             TEEECTTS-CCSSCCSSCC--TTCCEEECCS-SCCCEECTTSSTT------CTTCCEEECCSSC-CCEECTTTTTTCSSC
T ss_pred             CEEEcCCC-CcCcCCCccC--cCCCEEECCC-CcCCCcCHhHhhC------CCCCCEEECCCCc-CCCcCHHHhhCCcCC
Confidence            55677664 4778887553  6899999998 467777763 335      8899999999964 5555 7788999999


Q ss_pred             cEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEe
Q 037573          204 QQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKI  279 (357)
Q Consensus       204 ~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l  279 (357)
                      +.|++++ ..+..+|...+ .+++|++|+++++. ++.+ |..+..+++|++|++++ +.++.++..  ..+++|++|++
T Consensus        83 ~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           83 NSLVLYG-NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCC-CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEe
Confidence            9999998 47778887433 24599999998865 5555 56788999999999998 567777764  33789999999


Q ss_pred             cCCCCce
Q 037573          280 TDVNIFK  286 (357)
Q Consensus       280 ~~c~~l~  286 (357)
                      ++ |.+.
T Consensus       160 ~~-N~~~  165 (220)
T 2v9t_B          160 AQ-NPFI  165 (220)
T ss_dssp             CS-SCEE
T ss_pred             CC-CCcC
Confidence            98 5554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.13  E-value=1.2e-10  Score=95.45  Aligned_cols=87  Identities=14%  Similarity=0.019  Sum_probs=44.8

Q ss_pred             CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCC---CCCCCCcceEEecCCCCceeccc---ccccccCCc
Q 037573          226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPE---NDYPTNLTILKITDVNIFKSLFQ---WGLHRLNSL  299 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~~~---~~l~~l~~L  299 (357)
                      +|++|++++|.-...+|..+..+++|++|+++++ .++.++.   ...+++|+.|++++ +.++.++.   ..+..+++|
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccC
Confidence            5555555554322224444445566666666553 4444331   12345666666666 44554443   235567777


Q ss_pred             cEEEEeccCCCCCcCCC
Q 037573          300 KELIVNGEFPDMISFPQ  316 (357)
Q Consensus       300 ~~L~l~~~c~~l~~l~~  316 (357)
                      ++|++.+ | .+.++|.
T Consensus       150 ~~L~l~~-n-~~~~~~~  164 (168)
T 2ell_A          150 TYLDGYD-R-EDQEAPD  164 (168)
T ss_dssp             CEETTEE-T-TSCBCCS
T ss_pred             cEecCCC-C-Chhhccc
Confidence            7777776 3 4455544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.13  E-value=2.3e-10  Score=105.84  Aligned_cols=166  Identities=16%  Similarity=0.165  Sum_probs=122.1

Q ss_pred             CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc-cC-CCCCccEEEecCCCCCcccCCCCC-CCCC
Q 037573          150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LH-KLSRLQQIEIRNCPSLVSFPERGL-PSTN  226 (357)
Q Consensus       150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~-~l~~L~~L~l~~c~~l~~l~~~~~-~~~~  226 (357)
                      +.++.++ ..+..+|..+        .+.++.|+++++ .+..++.. +. .+++|+.|+++++ .+..++...+ .+++
T Consensus        21 ~~l~c~~-~~l~~iP~~~--------~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~   89 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQSL--------PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPN   89 (361)
T ss_dssp             TEEECCS-SCCSSCCSSC--------CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             CEEEeCC-CCcCccCccC--------CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCC
Confidence            5677776 5678888764        457999999995 57777655 44 7999999999984 6777775322 2349


Q ss_pred             cceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccc---cccCCcc
Q 037573          227 LTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGL---HRLNSLK  300 (357)
Q Consensus       227 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l---~~l~~L~  300 (357)
                      |++|+++++. ++.++. .+..+++|++|++++ +.+..++..  ..+++|+.|++++ +.++.++...+   ..+++|+
T Consensus        90 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           90 LRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             CCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCC
T ss_pred             CCEEECCCCc-CCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCC
Confidence            9999998855 676654 578999999999999 467777544  3378999999999 78888776644   5689999


Q ss_pred             EEEEeccCCCCCcCCCCC-CCCCC--cceEeccc
Q 037573          301 ELIVNGEFPDMISFPQEE-IGSTS--LTRLWIRD  331 (357)
Q Consensus       301 ~L~l~~~c~~l~~l~~~~-~~~~s--L~~L~l~~  331 (357)
                      +|++++  +.+..+|... ..++.  ++.|++.+
T Consensus       167 ~L~L~~--N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          167 LLDLSS--NKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             EEECCS--SCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             EEECCC--CCCCccCHHHhhhccHhhcceEEecC
Confidence            999998  7888877422 12333  36677765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.12  E-value=1e-09  Score=94.82  Aligned_cols=144  Identities=21%  Similarity=0.228  Sum_probs=103.4

Q ss_pred             cCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc-ccccCCCCCccEEEecCCCCCcccCCCCC-CCCC
Q 037573          149 LTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL-PHELHKLSRLQQIEIRNCPSLVSFPERGL-PSTN  226 (357)
Q Consensus       149 L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~  226 (357)
                      -..++.++ ..+..+|..+        .++|+.|+++++. +..+ |..+..+++|+.|+++++ .+..++...+ .+++
T Consensus        21 ~~~v~c~~-~~l~~ip~~~--------~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~   89 (229)
T 3e6j_A           21 GTTVDCRS-KRHASVPAGI--------PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQ   89 (229)
T ss_dssp             TTEEECTT-SCCSSCCSCC--------CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCEeEccC-CCcCccCCCC--------CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCC
Confidence            45667766 5677777654        5788899998864 4444 566778888999988874 5677765332 2348


Q ss_pred             cceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEE
Q 037573          227 LTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIV  304 (357)
Q Consensus       227 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l  304 (357)
                      |++|+++++ .++.++. .+..+++|++|++++ +.++.+|.. ..+++|+.|++++ +.++.++...+..+++|++|++
T Consensus        90 L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           90 LTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCEEECCCC-cCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEe
Confidence            888888875 4666654 357788888888887 467777655 3467888888888 6777776655777888888888


Q ss_pred             ec
Q 037573          305 NG  306 (357)
Q Consensus       305 ~~  306 (357)
                      .+
T Consensus       167 ~~  168 (229)
T 3e6j_A          167 FG  168 (229)
T ss_dssp             TT
T ss_pred             eC
Confidence            87

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.11  E-value=2.6e-13  Score=132.93  Aligned_cols=180  Identities=15%  Similarity=0.151  Sum_probs=135.2

Q ss_pred             cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCC-------------CCcccccccCCCCCccEEE-e
Q 037573          143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCD-------------NLKCLPHELHKLSRLQQIE-I  208 (357)
Q Consensus       143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~-------------~l~~lp~~l~~l~~L~~L~-l  208 (357)
                      +..+++|+.|++++ ..+..+|..+++      +++|+.|+++++.             .....|..++.+++|+.|+ +
T Consensus       345 ~~~~~~L~~L~Ls~-n~L~~Lp~~i~~------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l  417 (567)
T 1dce_A          345 SATDEQLFRCELSV-EKSTVLQSELES------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  417 (567)
T ss_dssp             CSTTTTSSSCCCCH-HHHHHHHHHHHH------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             cccCccceeccCCh-hhHHhhHHHHHH------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence            46788999999998 578899988877      7888888875542             2344566777788888887 3


Q ss_pred             cCCCCCcccCC--------CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEe
Q 037573          209 RNCPSLVSFPE--------RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKI  279 (357)
Q Consensus       209 ~~c~~l~~l~~--------~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l  279 (357)
                      +. ..+..++.        ..++...|+.|+++++ .++.+|. ++.+++|++|+++++ .++.+|.. +.+++|+.|++
T Consensus       418 ~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L  493 (567)
T 1dce_A          418 RA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQA  493 (567)
T ss_dssp             GH-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEEC
T ss_pred             hh-cccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEEC
Confidence            32 22222211        1112236899999885 5788886 999999999999994 67788765 45889999999


Q ss_pred             cCCCCceecccccccccCCccEEEEeccCCCCCcC--CCCCCCCCCcceEecccCccccccc
Q 037573          280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF--PQEEIGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l--~~~~~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      ++ +.++.++  .+..+++|++|++++  +.+..+  |..+..+++|+.|++++.+ ++.++
T Consensus       494 s~-N~l~~lp--~l~~l~~L~~L~Ls~--N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          494 SD-NALENVD--GVANLPRLQELLLCN--NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             CS-SCCCCCG--GGTTCSSCCEEECCS--SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             CC-CCCCCCc--ccCCCCCCcEEECCC--CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence            99 7888876  589999999999998  688887  7777788999999998763 44443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.11  E-value=2.8e-11  Score=112.03  Aligned_cols=15  Identities=20%  Similarity=0.361  Sum_probs=7.1

Q ss_pred             cCCCC-CcCEEeecCC
Q 037573          143 LHCLS-SLTEITVAGC  157 (357)
Q Consensus       143 ~~~l~-~L~~L~i~~c  157 (357)
                      +..++ +|++|++++|
T Consensus        46 l~~~~~~L~~L~Ls~N   61 (362)
T 3goz_A           46 FANTPASVTSLNLSGN   61 (362)
T ss_dssp             HHTCCTTCCEEECCSS
T ss_pred             HHhCCCceeEEECcCC
Confidence            34444 4555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.09  E-value=6.1e-10  Score=95.60  Aligned_cols=143  Identities=17%  Similarity=0.234  Sum_probs=107.5

Q ss_pred             CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc--ccCCCCCccEEEecCCCCCcccCCCCC-CCCC
Q 037573          150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH--ELHKLSRLQQIEIRNCPSLVSFPERGL-PSTN  226 (357)
Q Consensus       150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~  226 (357)
                      +.+++++ ..+..+|..+        .+.++.|+++++ .+..++.  .+..+++|+.|+++++ .+..++...+ .+++
T Consensus        14 ~~l~~s~-n~l~~iP~~~--------~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~   82 (220)
T 2v70_A           14 TTVDCSN-QKLNKIPEHI--------PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASG   82 (220)
T ss_dssp             TEEECCS-SCCSSCCSCC--------CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             CEeEeCC-CCcccCccCC--------CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCC
Confidence            5788887 5677888754        457889999985 4666632  3678999999999984 5776765222 2348


Q ss_pred             cceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEE
Q 037573          227 LTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI  303 (357)
Q Consensus       227 L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~  303 (357)
                      |++|+++++. ++.++ ..+..+++|++|++++ +.+..++..  ..+++|+.|++++ +.++.+++..+..+++|++|+
T Consensus        83 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           83 VNEILLTSNR-LENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CCEEECCSSC-CCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCc-cCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEE
Confidence            9999998855 55554 4588899999999988 467766443  3368999999998 778877666688899999999


Q ss_pred             Eec
Q 037573          304 VNG  306 (357)
Q Consensus       304 l~~  306 (357)
                      +++
T Consensus       160 L~~  162 (220)
T 2v70_A          160 LLA  162 (220)
T ss_dssp             CCS
T ss_pred             ecC
Confidence            998

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.09  E-value=7.4e-12  Score=115.95  Aligned_cols=11  Identities=9%  Similarity=-0.193  Sum_probs=6.2

Q ss_pred             cceEEeeccCC
Q 037573           51 KAWKLIIRTCC   61 (357)
Q Consensus        51 ~l~~l~l~~c~   61 (357)
                      +++.|++++|.
T Consensus        23 ~L~~L~Ls~n~   33 (362)
T 3goz_A           23 GVTSLDLSLNN   33 (362)
T ss_dssp             TCCEEECTTSC
T ss_pred             CceEEEccCCC
Confidence            36666666553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.06  E-value=2.1e-11  Score=116.34  Aligned_cols=198  Identities=17%  Similarity=0.214  Sum_probs=93.4

Q ss_pred             ccCCCcccEEeeccCcCcccccc-ccCCCC----CcCEEeecCCCcch-----hccccccccccccccccccEEEeeCCC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQ-ALHCLS----SLTEITVAGCTKLV-----SFLELSSVAEMFAIITSFENIMVNGCD  188 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~----~L~~L~i~~c~~l~-----~~~~~~~~L~~L~~l~~L~~L~l~~c~  188 (357)
                      +..+++|++|+++++..-...+. -...++    +|++|++++|. +.     .++..+..      +++|++|++++|.
T Consensus        52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~------~~~L~~L~Ls~n~  124 (461)
T 1z7x_W           52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRT------LPTLQELHLSDNL  124 (461)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTS------CTTCCEEECCSSB
T ss_pred             HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHcc------CCceeEEECCCCc
Confidence            44456666666666542111111 111233    46666666653 22     23333333      5666666666654


Q ss_pred             CCcc-----cccccC-CCCCccEEEecCCCCCcccC-----C--CCCCCCCcceEEeccCCcchhh-Hhh----hc-cCC
Q 037573          189 NLKC-----LPHELH-KLSRLQQIEIRNCPSLVSFP-----E--RGLPSTNLTAVCVINCEKLEAL-LNG----IH-RLT  249 (357)
Q Consensus       189 ~l~~-----lp~~l~-~l~~L~~L~l~~c~~l~~l~-----~--~~~~~~~L~~L~l~~c~~l~~l-~~~----~~-~l~  249 (357)
                       +..     +...+. ..++|++|++++| .+....     .  ..++  +|++|+++++. ++.. +..    +. ..+
T Consensus       125 -i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~  199 (461)
T 1z7x_W          125 -LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKP--DFKELTVSNND-INEAGVRVLCQGLKDSPC  199 (461)
T ss_dssp             -CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCT--TCCEEECCSSB-CHHHHHHHHHHHHHHSCC
T ss_pred             -CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCC--CCCEEECcCCC-cchHHHHHHHHHHhcCCC
Confidence             321     111111 2345666666665 232211     1  1123  66667766654 3321 111    11 244


Q ss_pred             cccceeeccCcCccc-----cCCC-CCCCCcceEEecCCCCceecc-----cccccccCCccEEEEeccCCCCCc-----
Q 037573          250 SHQQLTVEQCPGIVA-----IPEN-DYPTNLTILKITDVNIFKSLF-----QWGLHRLNSLKELIVNGEFPDMIS-----  313 (357)
Q Consensus       250 ~L~~L~l~~c~~l~~-----l~~~-~~~~~L~~L~l~~c~~l~~~~-----~~~l~~l~~L~~L~l~~~c~~l~~-----  313 (357)
                      +|++|++++| .+..     ++.. ..+++|++|+++++ .++...     +.....+++|++|++++ | .+..     
T Consensus       200 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~-n-~l~~~~~~~  275 (461)
T 1z7x_W          200 QLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWE-C-GITAKGCGD  275 (461)
T ss_dssp             CCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTT-S-CCCHHHHHH
T ss_pred             CceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcC-C-CCCHHHHHH
Confidence            6677777665 2332     1111 12466777777763 444221     11112466777777776 4 5544     


Q ss_pred             CCCCCCCCCCcceEecccC
Q 037573          314 FPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       314 l~~~~~~~~sL~~L~l~~c  332 (357)
                      ++..+...++|++|+++++
T Consensus       276 l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          276 LCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHhhCCCcceEECCCC
Confidence            4433333567777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.06  E-value=2.6e-10  Score=91.45  Aligned_cols=126  Identities=15%  Similarity=0.130  Sum_probs=88.8

Q ss_pred             CCCcccEEeeccCcCc-cccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcc-cccccC
Q 037573          121 VLCRLKYLELIDCECL-VNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKC-LPHELH  198 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~-lp~~l~  198 (357)
                      ..++|+.|+++++..- +.+|..+..+++|++|+++++ .+..+ ..+..      +++|+.|++++|. +.. +|..+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~------l~~L~~L~Ls~n~-i~~~~~~~~~   85 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPK------LNKLKKLELSDNR-VSGGLEVLAE   85 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCC------CTTCCEEECCSSC-CCSCTHHHHH
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhc------CCCCCEEECCCCc-ccchHHHHhh
Confidence            3478999999998643 378887888999999999986 56555 33334      8899999998865 444 777676


Q ss_pred             CCCCccEEEecCCCCCcccC--CCCCCCCCcceEEeccCCcchhhHh----hhccCCcccceeec
Q 037573          199 KLSRLQQIEIRNCPSLVSFP--ERGLPSTNLTAVCVINCEKLEALLN----GIHRLTSHQQLTVE  257 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~  257 (357)
                      .+++|+.|+++++ .++.++  .....+++|++|++++|. ++.++.    .+..+++|++|+++
T Consensus        86 ~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           86 KCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence            7888888888875 455543  211122378888887753 555543    56777888887765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.04  E-value=3.8e-10  Score=90.51  Aligned_cols=123  Identities=15%  Similarity=0.107  Sum_probs=73.5

Q ss_pred             cccccEEEeeCCCCCc--ccccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchh-hHhhhccCCcc
Q 037573          176 ITSFENIMVNGCDNLK--CLPHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEA-LLNGIHRLTSH  251 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L  251 (357)
                      .++|+.|++++|. +.  .+|..+..+++|+.|+++++ .+..++. ..+  ++|++|+++++. ++. +|..+..+++|
T Consensus        16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKL--NKLKKLELSDNR-VSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCC--TTCCEEECCSSC-CCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcC--CCCCEEECCCCc-ccchHHHHhhhCCCC
Confidence            4567777777764 44  66666677777777777765 4444421 223  377777777754 443 66666667777


Q ss_pred             cceeeccCcCccccC--C-CCCCCCcceEEecCCCCceeccc---ccccccCCccEEEEe
Q 037573          252 QQLTVEQCPGIVAIP--E-NDYPTNLTILKITDVNIFKSLFQ---WGLHRLNSLKELIVN  305 (357)
Q Consensus       252 ~~L~l~~c~~l~~l~--~-~~~~~~L~~L~l~~c~~l~~~~~---~~l~~l~~L~~L~l~  305 (357)
                      ++|+++++ .++.++  . .+.+++|++|++++ +.++..+.   ..+..+++|++|+++
T Consensus        91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence            77777774 454432  1 13356666677766 44554443   235566666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.03  E-value=1.9e-10  Score=115.94  Aligned_cols=152  Identities=13%  Similarity=0.075  Sum_probs=106.8

Q ss_pred             cccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc
Q 037573          116 TSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH  195 (357)
Q Consensus       116 ~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~  195 (357)
                      +..+..+++|+.|+++++. +..+|..+..+++|++|+++++ .+..+|..+.+      +++|+.|+++++. +..+|.
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~------l~~L~~L~Ls~N~-l~~lp~  287 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKN------LSNLRVLDLSHNR-LTSLPA  287 (727)
T ss_dssp             -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGG------GTTCCEEECTTSC-CSSCCS
T ss_pred             hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhC------CCCCCEEeCcCCc-CCccCh
Confidence            4457788999999999986 5688888889999999999985 67788887767      9999999999964 779999


Q ss_pred             ccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCc-ccceeeccCcCccccCCCCCCCCc
Q 037573          196 ELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTS-HQQLTVEQCPGIVAIPENDYPTNL  274 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~~~~L  274 (357)
                      .++.+++|+.|+++++ .+..+|.....+++|++|+++++.-...+|..+..+.. +..+++.++ .+.    ...+..|
T Consensus       288 ~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N-~l~----~~~p~~l  361 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN-RPE----IPLPHER  361 (727)
T ss_dssp             SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC-CCC----CCCCCC-
T ss_pred             hhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC-ccc----CcCcccc
Confidence            9999999999999985 67888875444559999999997654566665544322 233566663 332    2345678


Q ss_pred             ceEEecCC
Q 037573          275 TILKITDV  282 (357)
Q Consensus       275 ~~L~l~~c  282 (357)
                      +.|+++..
T Consensus       362 ~~l~l~~n  369 (727)
T 4b8c_D          362 RFIEINTD  369 (727)
T ss_dssp             --------
T ss_pred             ceeEeecc
Confidence            88888763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.02  E-value=2.4e-09  Score=89.88  Aligned_cols=100  Identities=16%  Similarity=0.217  Sum_probs=49.4

Q ss_pred             CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEE
Q 037573          226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI  303 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~  303 (357)
                      +|++|+++++ .++.+|..+..+++|++|++++ +.++.++..  ..+++|++|++++ +.++.+++..+..+++|++|+
T Consensus        32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCC-cCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEE
Confidence            5555555442 2444544555555555555555 244444432  1245555555555 445544444445555555555


Q ss_pred             EeccCCCCCcCCCC-CCCCCCcceEecc
Q 037573          304 VNGEFPDMISFPQE-EIGSTSLTRLWIR  330 (357)
Q Consensus       304 l~~~c~~l~~l~~~-~~~~~sL~~L~l~  330 (357)
                      +++  +.+..+|.. +..+++|++|++.
T Consensus       109 L~~--N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A          109 LHG--NDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             CCS--SCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCC--CCCCeeChhhhhcCccccEEEeC
Confidence            555  455555443 2234555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=3.1e-09  Score=96.83  Aligned_cols=76  Identities=16%  Similarity=0.260  Sum_probs=38.4

Q ss_pred             CCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCcc-EEEEeccCCCCCcCCCCC-CCCCC
Q 037573          248 LTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLK-ELIVNGEFPDMISFPQEE-IGSTS  323 (357)
Q Consensus       248 l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~-~L~l~~~c~~l~~l~~~~-~~~~s  323 (357)
                      +++|+.+++.+ +.++.++...+  +.+|+++++.+ + ++.++..++..+++|+ ++++.+   .++.++... ..+++
T Consensus       225 ~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~---~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPA---SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECT---TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcc---cceEEchhhhhCCcc
Confidence            45556666655 23555554422  45566666654 2 5555555555555565 555553   444444322 23445


Q ss_pred             cceEec
Q 037573          324 LTRLWI  329 (357)
Q Consensus       324 L~~L~l  329 (357)
                      |+++++
T Consensus       299 L~~l~l  304 (329)
T 3sb4_A          299 LRYVLA  304 (329)
T ss_dssp             EEEEEE
T ss_pred             CCEEEe
Confidence            555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.94  E-value=1.6e-09  Score=89.42  Aligned_cols=128  Identities=15%  Similarity=0.220  Sum_probs=79.1

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCC-CcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLS-SLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      +..+.+|+.|+++++. +..+|. +..+. +|++|+++++ .+..+ ..+..      +++|+.|+++++ .+..+|..+
T Consensus        15 ~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~------l~~L~~L~Ls~N-~l~~~~~~~   83 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPL------LRRLKTLLVNNN-RICRIGEGL   83 (176)
T ss_dssp             EECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCC------CSSCCEEECCSS-CCCEECSCH
T ss_pred             cCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCC-CCCcc-ccccc------CCCCCEEECCCC-cccccCcch
Confidence            4556788888888874 556654 44443 7888888874 45554 22223      777888888775 466666554


Q ss_pred             -CCCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhh----hccCCcccceeeccC
Q 037573          198 -HKLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNG----IHRLTSHQQLTVEQC  259 (357)
Q Consensus       198 -~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~----~~~l~~L~~L~l~~c  259 (357)
                       ..+++|+.|+++++ .+..+|.  ....+++|++|+++++. +..+|..    +..+++|++|+++++
T Consensus        84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence             66777777777764 4455543  11122367777776644 4555543    566677777776664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.90  E-value=1.3e-08  Score=84.04  Aligned_cols=121  Identities=23%  Similarity=0.306  Sum_probs=70.8

Q ss_pred             ccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceee
Q 037573          179 FENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTV  256 (357)
Q Consensus       179 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l  256 (357)
                      .+.+++++. .+..+|..+  .++|+.|+++++ .+..++...+ .+++|++|+++++ .++.++. .+..+++|++|++
T Consensus         9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSS-CCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCC-CCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence            455666553 456666444  356777777763 4555554322 2236777777664 3555543 3466677777777


Q ss_pred             ccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573          257 EQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       257 ~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      ++ +.++.++..  ..+++|++|++++ +.++.++...+..+++|++|++.+
T Consensus        84 ~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           84 HE-NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CC-CCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecC
Confidence            66 355555543  2256677777766 556655554445666777777766

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.88  E-value=1.3e-08  Score=85.33  Aligned_cols=121  Identities=17%  Similarity=0.188  Sum_probs=90.3

Q ss_pred             ccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCC--CCCCCCcceEEeccCCcchhh-HhhhccCCccccee
Q 037573          179 FENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPER--GLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLT  255 (357)
Q Consensus       179 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~  255 (357)
                      .+.++++++ .+..+|..+.  .+|+.|+++++ .+..++..  .-.+++|++|+++++. ++.+ |..+..+++|++|+
T Consensus        10 ~~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTGR-GLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEcCCC-CcCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEE
Confidence            467888774 5788887664  38899999874 66666652  1233489999998855 5555 66788899999999


Q ss_pred             eccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573          256 VEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       256 l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      +++ +.++.++..  ..+++|++|++++ +.++.+.+..+..+++|++|++++
T Consensus        85 Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           85 LGE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCC-CcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCC
Confidence            988 467777654  2368899999998 677777666678888999999988

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.86  E-value=1.1e-08  Score=85.60  Aligned_cols=123  Identities=15%  Similarity=0.201  Sum_probs=92.2

Q ss_pred             CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc--cCCCCCccEEEecCCCCCcccCC-CCCCCCC
Q 037573          150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE--LHKLSRLQQIEIRNCPSLVSFPE-RGLPSTN  226 (357)
Q Consensus       150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~--l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~  226 (357)
                      +.+++++ ..+..+|..+        ..+|+.|+++++ .+..++..  +..+++|+.|+++++ .+..++. ....+++
T Consensus        11 ~~l~~s~-~~l~~ip~~~--------~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRDI--------PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTT-SCCSSCCSCC--------CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTT
T ss_pred             CEEEcCC-CCcCcCccCC--------CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCccc
Confidence            6788887 5678888765        458999999986 57777653  788999999999985 5666643 2223349


Q ss_pred             cceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCce
Q 037573          227 LTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFK  286 (357)
Q Consensus       227 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~  286 (357)
                      |++|+++++. ++.++. .+..+++|++|+++++ .+..++..  ..+++|++|++++ +.+.
T Consensus        80 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~  139 (192)
T 1w8a_A           80 IQELQLGENK-IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLAS-NPFN  139 (192)
T ss_dssp             CCEEECCSCC-CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTT-CCBC
T ss_pred             CCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCC-CCcc
Confidence            9999998855 666544 5788999999999984 67666443  3478999999998 6665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.84  E-value=1.4e-08  Score=85.18  Aligned_cols=123  Identities=18%  Similarity=0.261  Sum_probs=87.8

Q ss_pred             CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCC-CCCCcc
Q 037573          150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLT  228 (357)
Q Consensus       150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~  228 (357)
                      +.++.++ ..+..+|..+        .++|+.|+++++ .+..+|..+..+++|+.|+++++ .++.++...+ .+++|+
T Consensus        13 ~~l~~~~-~~l~~ip~~~--------~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~   81 (193)
T 2wfh_A           13 TVVRCSN-KGLKVLPKGI--------PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLL   81 (193)
T ss_dssp             TEEECTT-SCCSSCCSCC--------CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             CEEEcCC-CCCCcCCCCC--------CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCC
Confidence            5677776 4677888654        568999999885 57788888888999999999874 6666665322 234888


Q ss_pred             eEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCCC--CCCCcceEEecCCCCce
Q 037573          229 AVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITDVNIFK  286 (357)
Q Consensus       229 ~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~  286 (357)
                      +|+++++. ++.++ ..+..+++|++|++++ +.+..++...  .+++|+.|++++ |.+.
T Consensus        82 ~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~~~  139 (193)
T 2wfh_A           82 TLILSYNR-LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA-NPLY  139 (193)
T ss_dssp             EEECCSSC-CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS-SCEE
T ss_pred             EEECCCCc-cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC-CCee
Confidence            88887754 55554 3577788888888887 4677776642  367788888877 4443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.81  E-value=4.8e-09  Score=86.60  Aligned_cols=77  Identities=13%  Similarity=0.222  Sum_probs=35.6

Q ss_pred             cccccEEEeeCCCCCcccccccCCC-CCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhh-ccCCccc
Q 037573          176 ITSFENIMVNGCDNLKCLPHELHKL-SRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGI-HRLTSHQ  252 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~  252 (357)
                      +++|+.|++++| .+..+|. +..+ ++|+.|+++++ .+..++. ..+  ++|++|+++++. ++.+|..+ ..+++|+
T Consensus        18 ~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~~l~~l--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKLDGFPLL--RRLKTLLVNNNR-ICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEECCCCCC--SSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCcccccccC--CCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence            556666666664 3444443 3332 35666666553 3333321 122  255555554432 34443322 4445555


Q ss_pred             ceeecc
Q 037573          253 QLTVEQ  258 (357)
Q Consensus       253 ~L~l~~  258 (357)
                      +|++++
T Consensus        92 ~L~L~~   97 (176)
T 1a9n_A           92 ELILTN   97 (176)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.79  E-value=7.4e-09  Score=104.37  Aligned_cols=153  Identities=12%  Similarity=0.090  Sum_probs=85.1

Q ss_pred             CCcCEEeecCCCcchhccccccccccccccccccEEEeeC----CCCCcccccccCCCCCccEEEecCCCCCcccCCCCC
Q 037573          147 SSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNG----CDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL  222 (357)
Q Consensus       147 ~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~----c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~  222 (357)
                      +.++.|++.+ ..+...+.....      ...|..+.|..    ++.+...|..+..+++|+.|+++++ .+..+|...+
T Consensus       173 ~~~~~l~L~~-n~~~~~~~~~l~------~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~  244 (727)
T 4b8c_D          173 PLTPKIELFA-NGKDEANQALLQ------HKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIF  244 (727)
T ss_dssp             --------------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGG
T ss_pred             CccceEEeeC-CCCCcchhhHhh------cCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhc
Confidence            5577777765 345444443322      22333333322    1234445667778899999999985 5667776554


Q ss_pred             CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccE
Q 037573          223 PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKE  301 (357)
Q Consensus       223 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~  301 (357)
                      .+++|++|+++++ .++.+|..+..+++|++|+++++ .++.+|.. +.+++|+.|++++ +.++.++.. +..+++|++
T Consensus       245 ~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~  320 (727)
T 4b8c_D          245 KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQF  320 (727)
T ss_dssp             GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCC
T ss_pred             CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccE
Confidence            5568999999885 46788888899999999999884 57777765 4478899999998 677777665 888999999


Q ss_pred             EEEeccCCCCCc
Q 037573          302 LIVNGEFPDMIS  313 (357)
Q Consensus       302 L~l~~~c~~l~~  313 (357)
                      |+|++  +.+..
T Consensus       321 L~L~~--N~l~~  330 (727)
T 4b8c_D          321 LGVEG--NPLEK  330 (727)
T ss_dssp             EECTT--SCCCS
T ss_pred             EeCCC--CccCC
Confidence            99998  45543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.74  E-value=6.7e-08  Score=79.60  Aligned_cols=124  Identities=23%  Similarity=0.319  Sum_probs=77.6

Q ss_pred             cCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc-cCCCCCccEEEecCCCCCcccCCCCC-CCCC
Q 037573          149 LTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHKLSRLQQIEIRNCPSLVSFPERGL-PSTN  226 (357)
Q Consensus       149 L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~  226 (357)
                      .+.++.++ ..+..+|...        .++|+.|+++++. +..+|.. +..+++|+.|+++++ .+..++...+ .+++
T Consensus         9 ~~~l~~~~-~~l~~~p~~~--------~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A            9 GTEIRCNS-KGLTSVPTGI--------PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TTEEECCS-SCCSSCCTTC--------CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCEEEecC-CCCccCCCCC--------CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCc
Confidence            45666665 4566666443        4677888887753 5555543 466777888888764 5666665321 2347


Q ss_pred             cceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCCC--CCCCcceEEecCCCCce
Q 037573          227 LTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITDVNIFK  286 (357)
Q Consensus       227 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~  286 (357)
                      |++|+++++. ++.+|. .+..+++|++|+++++ .++.++...  .+++|++|++++ +.+.
T Consensus        78 L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~~~  137 (177)
T 2o6r_A           78 LTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT-NPWD  137 (177)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS-SCBC
T ss_pred             cCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecC-CCee
Confidence            7888887743 555544 3567777888888774 566666542  256778888877 4444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=1.3e-07  Score=86.08  Aligned_cols=179  Identities=11%  Similarity=0.116  Sum_probs=111.2

Q ss_pred             CCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeC-------------
Q 037573          122 LCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNG-------------  186 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~-------------  186 (357)
                      +++|+.+.+.+  .+..++. .+..+++|+.+++.+ ..+..++...+ .      +.++..+....             
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~------~~~l~~l~~~~~~~~~~~~~i~~~  170 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALAD------SVTAIFIPLGSSDAYRFKNRWEHF  170 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCT------TTCEEEECTTCTHHHHTSTTTTTS
T ss_pred             cCCCcEEECCc--cccchhHHHhhcCcccceEEcCC-CCccccchhhhcC------CCceEEecCcchhhhhcccccccc
Confidence            78888888877  4677665 577888899988886 44555665544 2      22222222211             


Q ss_pred             ----CCCCc---------cccccc----CCCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHh-hhc
Q 037573          187 ----CDNLK---------CLPHEL----HKLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLN-GIH  246 (357)
Q Consensus       187 ----c~~l~---------~lp~~l----~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~-~~~  246 (357)
                          |..++         .++..+    ....++..+.+.+.-.-..+..  ..+  ++|+.+++.++. ++.+|. .+.
T Consensus       171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~--~~L~~l~L~~n~-i~~I~~~aF~  247 (329)
T 3sb4_A          171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYM--PNLVSLDISKTN-ATTIPDFTFA  247 (329)
T ss_dssp             CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHC--TTCCEEECTTBC-CCEECTTTTT
T ss_pred             ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhc--CCCeEEECCCCC-cceecHhhhh
Confidence                11111         011100    0122333333332100000000  013  489999998743 677765 578


Q ss_pred             cCCcccceeeccCcCccccCCCCC--CCCcc-eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC
Q 037573          247 RLTSHQQLTVEQCPGIVAIPENDY--PTNLT-ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE  318 (357)
Q Consensus       247 ~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~-~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~  318 (357)
                      ++++|+.+++.+  +++.++...+  +.+|+ .+++.+  .++.+...++..+++|+++++.+  +.+..++...
T Consensus       248 ~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~--n~i~~I~~~a  316 (329)
T 3sb4_A          248 QKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG--DKITTLGDEL  316 (329)
T ss_dssp             TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS--SCCCEECTTT
T ss_pred             CCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC--CccCccchhh
Confidence            899999999987  3888877644  78899 999987  68888888889999999999987  7888888755

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.64  E-value=1.6e-10  Score=97.44  Aligned_cols=18  Identities=11%  Similarity=0.283  Sum_probs=8.5

Q ss_pred             cccccCCCCCcCEEeecC
Q 037573          139 LPQALHCLSSLTEITVAG  156 (357)
Q Consensus       139 lp~~~~~l~~L~~L~i~~  156 (357)
                      +|..+..+++|++|++++
T Consensus        40 l~~~~~~l~~L~~L~ls~   57 (198)
T 1ds9_A           40 MDATLSTLKACKHLALST   57 (198)
T ss_dssp             CHHHHHHTTTCSEEECSE
T ss_pred             hhHHHhcCCCCCEEECCC
Confidence            333444455555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.63  E-value=1.1e-09  Score=92.32  Aligned_cols=124  Identities=16%  Similarity=0.252  Sum_probs=94.3

Q ss_pred             cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573          118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL  197 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l  197 (357)
                      .++.+++|++|+++++. +..+| .+..+++|++|+++++ .+..+|.....      +++|+.|++++| .+..+| .+
T Consensus        43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~------~~~L~~L~L~~N-~l~~l~-~~  111 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAV------ADTLEELWISYN-QIASLS-GI  111 (198)
T ss_dssp             HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHH------HHHCSEEEEEEE-ECCCHH-HH
T ss_pred             HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-Ccccccchhhc------CCcCCEEECcCC-cCCcCC-cc
Confidence            46778999999999975 66788 6889999999999985 57777765544      789999999996 577777 58


Q ss_pred             CCCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchhhHh----------hhccCCccccee
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEALLN----------GIHRLTSHQQLT  255 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~l~~----------~~~~l~~L~~L~  255 (357)
                      ..+++|+.|+++++ .+..++.    ..++  +|++|+++++.-....|.          .+..+++|++|+
T Consensus       112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~--~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          112 EKLVNLRVLYMSNN-KITNWGEIDKLAALD--KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEE-ECCCHHHHHHHTTTT--TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ccCCCCCEEECCCC-cCCchhHHHHHhcCC--CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            88899999999985 5554432    3445  899999988653222222          267788888886

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.58  E-value=1.9e-07  Score=76.52  Aligned_cols=97  Identities=22%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             cEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCC--CCCCcceEEec
Q 037573          204 QQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKIT  280 (357)
Q Consensus       204 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~  280 (357)
                      +.+++++ ..++.+|....+  +|++|+++++ .++.+ |..+..+++|++|++++ +.++.++...  .+++|+.|+++
T Consensus        12 ~~l~~s~-n~l~~ip~~~~~--~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           12 TTVDCSG-KSLASVPTGIPT--TTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TEEECTT-SCCSSCCSCCCT--TCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEeCC-CCcCccCccCCC--CCcEEEcCCC-cCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECC
Confidence            3444443 344444443322  5555555543 23333 33455555555555555 3455554432  24556666665


Q ss_pred             CCCCceecccccccccCCccEEEEec
Q 037573          281 DVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       281 ~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      + +.++.+++..+..+++|++|++++
T Consensus        87 ~-N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           87 D-NQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             S-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             C-CccCEeCHHHhcCCCCCCEEEeCC
Confidence            5 455555444455556666666665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.57  E-value=2.2e-07  Score=76.44  Aligned_cols=96  Identities=25%  Similarity=0.276  Sum_probs=51.2

Q ss_pred             EEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCC--CCCCcceEEecC
Q 037573          205 QIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITD  281 (357)
Q Consensus       205 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~  281 (357)
                      .+++++ ..+..+|....+  +|++|+++++. ++.+ |..+..+++|++|++++ +.++.+|...  .+++|++|++++
T Consensus        16 ~l~~~~-n~l~~iP~~~~~--~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           16 LVNCQN-IRLASVPAGIPT--DKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             EEECCS-SCCSSCCSCCCT--TCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEEeCC-CCCCccCCCcCC--CCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC
Confidence            344443 344445543322  55666665533 3433 34455666666666665 3555555432  245666666666


Q ss_pred             CCCceecccccccccCCccEEEEec
Q 037573          282 VNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       282 c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                       +.++.+++..+..+++|++|++.+
T Consensus        91 -N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           91 -NHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             -SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             -CccceeCHHHhccccCCCEEEeCC
Confidence             556655554455666666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.57  E-value=1.5e-06  Score=81.27  Aligned_cols=186  Identities=15%  Similarity=0.166  Sum_probs=90.7

Q ss_pred             cccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-ccCCCC
Q 037573          124 RLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLS  201 (357)
Q Consensus       124 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~  201 (357)
                      +|+.+.+..  .+..++. .+..+++|+.+++.+ ..+..++...+.      ..+|+.+.+..  .+..++. .+..++
T Consensus       158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~------~~~L~~l~lp~--~l~~I~~~aF~~~~  226 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFV------YAGIEEVLLPV--TLKEIGSQAFLKTS  226 (401)
T ss_dssp             CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTT------TCCCSEEECCT--TCCEECTTTTTTCT
T ss_pred             CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEe------ecccCEEEeCC--chheehhhHhhCCC
Confidence            455555543  3444442 455566666666654 345556655554      45566665543  2444432 233455


Q ss_pred             CccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCcc-----ccCCCCC--CCC
Q 037573          202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIV-----AIPENDY--PTN  273 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~-----~l~~~~~--~~~  273 (357)
                      +|+.+.+..  +++.++...+...+|+.+.+.+  .++.++ ..+.++++|+.+.+.+. .+.     .++...+  +++
T Consensus       227 ~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~  301 (401)
T 4fdw_A          227 QLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPK  301 (401)
T ss_dssp             TCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTT
T ss_pred             CCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCcc
Confidence            666666653  3455554433334566665522  233332 24555566666665442 111     2333322  455


Q ss_pred             cceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573          274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR  330 (357)
Q Consensus       274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~  330 (357)
                      |+.+.+.+  .++.+...++..+.+|+++.+..   ++..++...+.-.+|+.+.+.
T Consensus       302 L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~---~l~~I~~~aF~~~~L~~l~l~  353 (401)
T 4fdw_A          302 LARFEIPE--SIRILGQGLLGGNRKVTQLTIPA---NVTQINFSAFNNTGIKEVKVE  353 (401)
T ss_dssp             CCEECCCT--TCCEECTTTTTTCCSCCEEEECT---TCCEECTTSSSSSCCCEEEEC
T ss_pred             CCeEEeCC--ceEEEhhhhhcCCCCccEEEECc---cccEEcHHhCCCCCCCEEEEc
Confidence            66665542  35555555555556666666543   344444333211155555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.56  E-value=2.7e-06  Score=79.56  Aligned_cols=194  Identities=12%  Similarity=0.154  Sum_probs=140.6

Q ss_pred             ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCccccc
Q 037573          117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLPH  195 (357)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp~  195 (357)
                      ..|..+++|+.+.+.++ .+..++...-...+|+.+.+..  .+..++...+ +      +++|+.+++..  ++..++.
T Consensus       174 ~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~------~~~L~~l~l~~--~l~~I~~  242 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLK------TSQLKTIEIPE--NVSTIGQ  242 (401)
T ss_dssp             STTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTT------CTTCCCEECCT--TCCEECT
T ss_pred             HHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC--chheehhhHhhC------CCCCCEEecCC--CccCccc
Confidence            45778899999999875 4777777544578999999974  5777777655 5      78999999976  4677765


Q ss_pred             ccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcc----hhhH-hhhccCCcccceeeccCcCccccCCCC
Q 037573          196 ELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKL----EALL-NGIHRLTSHQQLTVEQCPGIVAIPEND  269 (357)
Q Consensus       196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l----~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~  269 (357)
                      ....-.+|+.+.+..  .++.++...+ .+++|+.+.+.+...-    ..++ ..+.++++|+.+.+.+  .++.++...
T Consensus       243 ~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a  318 (401)
T 4fdw_A          243 EAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL  318 (401)
T ss_dssp             TTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred             cccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh
Confidence            544447899999964  5677766433 2459999999764321    1233 4678899999999974  588887764


Q ss_pred             C--CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC--CCCCcceEecc
Q 037573          270 Y--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI--GSTSLTRLWIR  330 (357)
Q Consensus       270 ~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~--~~~sL~~L~l~  330 (357)
                      +  +.+|+.+.+..  +++.+...++..+ +|+++++.+  +.+..++...+  .+.++..|++-
T Consensus       319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~--n~~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG--TTPPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC--SSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred             hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC--CCCcccccccccCCCCCccEEEeC
Confidence            4  78999999954  5888877778888 999999998  56666655442  23455566543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.47  E-value=4.6e-07  Score=74.48  Aligned_cols=99  Identities=24%  Similarity=0.269  Sum_probs=80.4

Q ss_pred             cceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEE
Q 037573          227 LTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIV  304 (357)
Q Consensus       227 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l  304 (357)
                      -+.+++++ +.++.+|..+.  ++|++|++++ +.++.++..  ..+++|+.|++++ +.++.++...+..+++|++|++
T Consensus        14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SSEEECCS-SCCSSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCC-CCCCccCCCcC--CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEEC
Confidence            36788877 45788887654  8999999998 567777554  3478999999999 7899888766688999999999


Q ss_pred             eccCCCCCcCCCC-CCCCCCcceEecccC
Q 037573          305 NGEFPDMISFPQE-EIGSTSLTRLWIRDF  332 (357)
Q Consensus       305 ~~~c~~l~~l~~~-~~~~~sL~~L~l~~c  332 (357)
                      ++  +.+..+|.. +..+++|++|++++.
T Consensus        89 ~~--N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           89 ND--NHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CS--SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             CC--CccceeCHHHhccccCCCEEEeCCC
Confidence            98  789999876 556899999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.45  E-value=1.4e-07  Score=77.24  Aligned_cols=86  Identities=13%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             CcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC---C---CCCCcceEEecCCCCceecccccccccCC
Q 037573          226 NLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN---D---YPTNLTILKITDVNIFKSLFQWGLHRLNS  298 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~---~---~~~~L~~L~l~~c~~l~~~~~~~l~~l~~  298 (357)
                      .|++|++++|. ++.. ...+.++++|++|++++|..+++..-.   .   .+++|++|++++|.++++.....+..+++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            56666666665 3322 123455666666666666655432110   0   12357777777777776433334556777


Q ss_pred             ccEEEEeccCCCCCc
Q 037573          299 LKELIVNGEFPDMIS  313 (357)
Q Consensus       299 L~~L~l~~~c~~l~~  313 (357)
                      |++|++++ |+.++.
T Consensus       141 L~~L~L~~-c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSD-LPGVKE  154 (176)
T ss_dssp             CCEEEEES-CTTCCC
T ss_pred             CCEEECCC-CCCCCc
Confidence            77777777 776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.43  E-value=6e-07  Score=73.45  Aligned_cols=99  Identities=26%  Similarity=0.313  Sum_probs=81.2

Q ss_pred             CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEE
Q 037573          226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI  303 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~  303 (357)
                      +.+.+++++ +.++.+|..+  .++|++|++++ +.++.++..  ..+++|++|++++ +.++.+++..+..+++|++|+
T Consensus        10 ~~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           10 SGTTVDCSG-KSLASVPTGI--PTTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             ETTEEECTT-SCCSSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEeCC-CCcCccCccC--CCCCcEEEcCC-CcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEE
Confidence            457888887 5578888755  48899999998 578777554  3478999999999 789988877678999999999


Q ss_pred             EeccCCCCCcCCCC-CCCCCCcceEeccc
Q 037573          304 VNGEFPDMISFPQE-EIGSTSLTRLWIRD  331 (357)
Q Consensus       304 l~~~c~~l~~l~~~-~~~~~sL~~L~l~~  331 (357)
                      +++  +.+..+|.. +..+++|++|++++
T Consensus        85 L~~--N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           85 LND--NQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CCS--SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCC--CccCEeCHHHhcCCCCCCEEEeCC
Confidence            998  789998875 55688999999985

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.40  E-value=7.6e-07  Score=81.42  Aligned_cols=96  Identities=23%  Similarity=0.311  Sum_probs=52.7

Q ss_pred             EecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCC
Q 037573          207 EIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVN  283 (357)
Q Consensus       207 ~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~  283 (357)
                      +.++...+..+|. .-.+++|++|++++++.++.++ ..+..+++|++|++++ +.+..++..  ..+++|+.|+|++ |
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N   90 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-N   90 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-S
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCC-C
Confidence            4443224555665 2233456666666544555554 3466666666666666 355555543  2256666666666 5


Q ss_pred             CceecccccccccCCccEEEEec
Q 037573          284 IFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       284 ~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      .++.+++..+..++ |+.|++.+
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCS
T ss_pred             ccceeCHHHcccCC-ceEEEeeC
Confidence            56655544333333 66666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.28  E-value=1.3e-06  Score=80.34  Aligned_cols=151  Identities=13%  Similarity=0.230  Sum_probs=76.0

Q ss_pred             ccCCCcccEEeeccCcC---------ccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCC
Q 037573          119 IQVLCRLKYLELIDCEC---------LVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDN  189 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~---------l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~  189 (357)
                      +..+++|+.|.+.+...         ...+...+..+|+|+.|.++++..+ .++. + .      +++|+.|++..|..
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~------~~~L~~L~L~~~~l  205 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-P------RPNLKSLEIISGGL  205 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-B------CTTCSEEEEECSBC
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-c------CCCCcEEEEecCCC
Confidence            34567788877754321         0123333456778888888776332 2222 1 1      67788888876542


Q ss_pred             Cccccccc--CCCCCccEEEecCCC-------CCccc----CCCCCCCCCcceEEeccCCcchhhHhhh---ccCCcccc
Q 037573          190 LKCLPHEL--HKLSRLQQIEIRNCP-------SLVSF----PERGLPSTNLTAVCVINCEKLEALLNGI---HRLTSHQQ  253 (357)
Q Consensus       190 l~~lp~~l--~~l~~L~~L~l~~c~-------~l~~l----~~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~l~~L~~  253 (357)
                      -......+  ..+|+|+.|+++.+.       .+..+    ....+|  +|++|.+.+|......+..+   ..+++|++
T Consensus       206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p--~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~  283 (362)
T 2ra8_A          206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP--NLKWLGIVDAEEQNVVVEMFLESDILPQLET  283 (362)
T ss_dssp             CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCT--TCCEEEEESCTTHHHHHHHHHHCSSGGGCSE
T ss_pred             ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCC--CcCEEeCCCCCCchHHHHHHHhCccCCCCCE
Confidence            11111122  257778887775211       11111    112234  77777777665332222212   24566777


Q ss_pred             eeeccCcCccc-----cCCC-CCCCCcceEEecC
Q 037573          254 LTVEQCPGIVA-----IPEN-DYPTNLTILKITD  281 (357)
Q Consensus       254 L~l~~c~~l~~-----l~~~-~~~~~L~~L~l~~  281 (357)
                      |+++. +.+..     ++.. ..+++|++|++++
T Consensus       284 LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          284 MDISA-GVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             EECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             EECCC-CCCChHHHHHHHhhcccCCcceEEECCC
Confidence            77754 34443     2221 1245666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.27  E-value=1.9e-06  Score=79.30  Aligned_cols=14  Identities=0%  Similarity=-0.043  Sum_probs=9.0

Q ss_pred             cCCCCCcCEEeecC
Q 037573          143 LHCLSSLTEITVAG  156 (357)
Q Consensus       143 ~~~l~~L~~L~i~~  156 (357)
                      +..+++|+.|.+.+
T Consensus       135 ~~~l~~L~~L~l~~  148 (362)
T 2ra8_A          135 KEKFAHFEGLFWGD  148 (362)
T ss_dssp             HHHHTTCSEEEECC
T ss_pred             hhhcchhhheeecC
Confidence            44567777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.19  E-value=6.1e-06  Score=75.31  Aligned_cols=100  Identities=16%  Similarity=0.181  Sum_probs=67.3

Q ss_pred             EeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCccccc-ccCCCCCccE
Q 037573          128 LELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLSRLQQ  205 (357)
Q Consensus       128 L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~  205 (357)
                      ++.++...+..+|. +..+++|++|++++...+..++.. +..      +++|+.|+++++ .+..+|. .+..+++|+.
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~------l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRG------LGELRNLTIVKS-GLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS------CCCCSEEECCSS-CCCEECTTGGGSCSCCCE
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc------ccCCCEEECCCC-ccceeCHHHhcCCcCCCE
Confidence            45555424667777 777888888888764567766643 335      778888888875 4665544 5677888888


Q ss_pred             EEecCCCCCcccCCCCCCCCCcceEEeccCC
Q 037573          206 IEIRNCPSLVSFPERGLPSTNLTAVCVINCE  236 (357)
Q Consensus       206 L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  236 (357)
                      |++++ ..+..+|...+...+|+.|++.++.
T Consensus        85 L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           85 LNLSF-NALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             EECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             EeCCC-CccceeCHHHcccCCceEEEeeCCC
Confidence            88886 5677777655443348888887644

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.14  E-value=1.9e-06  Score=70.51  Aligned_cols=37  Identities=14%  Similarity=0.241  Sum_probs=17.0

Q ss_pred             CcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCC
Q 037573          148 SLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNL  190 (357)
Q Consensus       148 ~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l  190 (357)
                      .|+.|++++|. +....     ++.|..+++|+.|++++|..+
T Consensus        62 ~L~~LDLs~~~-Itd~G-----L~~L~~~~~L~~L~L~~C~~I   98 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIG-----FDHMEGLQYVEKIRLCKCHYI   98 (176)
T ss_dssp             CEEEEEEESCC-CCGGG-----GGGGTTCSCCCEEEEESCTTC
T ss_pred             eEeEEeCcCCC-ccHHH-----HHHhcCCCCCCEEEeCCCCcc
Confidence            46666666654 32211     222222555555555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.79  E-value=3.8e-06  Score=77.69  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=63.3

Q ss_pred             CCcccEEeeccCcCccc----cccccCC-CCCcCEEeecCCCcchhc--cccccccccccccccccEEEeeCCCCCcc--
Q 037573          122 LCRLKYLELIDCECLVN----LPQALHC-LSSLTEITVAGCTKLVSF--LELSSVAEMFAIITSFENIMVNGCDNLKC--  192 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~----lp~~~~~-l~~L~~L~i~~c~~l~~~--~~~~~~L~~L~~l~~L~~L~l~~c~~l~~--  192 (357)
                      .++|+.|++++|..-..    +...+.. .++|++|++++|. +...  ......      +++|+.|++++|. +..  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~------L~~L~~L~Ls~n~-l~~~~  142 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPV------FLRARKLGLQLNS-LGPEA  142 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHH------HHTEEEEECCSSC-CCHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHH------HHhccHhhcCCCC-CCHHH
Confidence            35777888887763221    2222222 3578888888763 3211  111112      5677778887763 322  


Q ss_pred             ---ccccc-CCCCCccEEEecCCCCCcccC-----C--CCCCCCCcceEEeccCCcch-----hhHhhhccCCcccceee
Q 037573          193 ---LPHEL-HKLSRLQQIEIRNCPSLVSFP-----E--RGLPSTNLTAVCVINCEKLE-----ALLNGIHRLTSHQQLTV  256 (357)
Q Consensus       193 ---lp~~l-~~l~~L~~L~l~~c~~l~~l~-----~--~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l  256 (357)
                         +...+ ...++|+.|++++| .+....     .  ...+  +|++|++++|. ++     .++..+...++|++|++
T Consensus       143 ~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~--~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~L  218 (372)
T 3un9_A          143 CKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNT--SVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNV  218 (372)
T ss_dssp             HHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCS--SCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred             HHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCC--CcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEEC
Confidence               11222 23456677777665 232211     1  1122  66666666644 33     22344555566666666


Q ss_pred             ccC
Q 037573          257 EQC  259 (357)
Q Consensus       257 ~~c  259 (357)
                      ++|
T Consensus       219 s~N  221 (372)
T 3un9_A          219 AYN  221 (372)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.73  E-value=4.7e-06  Score=77.08  Aligned_cols=158  Identities=19%  Similarity=0.189  Sum_probs=98.0

Q ss_pred             CCCcCEEeecCCCcchhcccc-cccccccc-ccccccEEEeeCCCCCcc--cccccCCCCCccEEEecCCCCCcccCCCC
Q 037573          146 LSSLTEITVAGCTKLVSFLEL-SSVAEMFA-IITSFENIMVNGCDNLKC--LPHELHKLSRLQQIEIRNCPSLVSFPERG  221 (357)
Q Consensus       146 l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~-~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~l~~~~  221 (357)
                      +++|+.|++++|. +...... +..  .|. ..++|+.|++++|. +..  +......+++|+.|++++| .+.......
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~--~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~  145 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAA--VLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKD  145 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHH--HHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHH--HHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHH
Confidence            5689999999975 4322111 000  000 03689999999975 332  1111223568999999986 443322110


Q ss_pred             ------CCCCCcceEEeccCCcch-----hhHhhhccCCcccceeeccCcCccccC-----CC-CCCCCcceEEecCCCC
Q 037573          222 ------LPSTNLTAVCVINCEKLE-----ALLNGIHRLTSHQQLTVEQCPGIVAIP-----EN-DYPTNLTILKITDVNI  284 (357)
Q Consensus       222 ------~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l~-----~~-~~~~~L~~L~l~~c~~  284 (357)
                            -+.++|++|++++|. ++     .++..+...++|++|++++| .+....     .. ..+++|++|++++ +.
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~-N~  222 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAY-NG  222 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCS-SC
T ss_pred             HHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCC-CC
Confidence                  122489999999976 44     35556778899999999996 454321     11 1256899999999 55


Q ss_pred             ceeccc----ccccccCCccEEEEeccCCCCCc
Q 037573          285 FKSLFQ----WGLHRLNSLKELIVNGEFPDMIS  313 (357)
Q Consensus       285 l~~~~~----~~l~~l~~L~~L~l~~~c~~l~~  313 (357)
                      ++....    ..+...++|++|++++ | .+..
T Consensus       223 i~~~g~~~l~~~L~~~~~L~~L~Ls~-N-~i~~  253 (372)
T 3un9_A          223 AGDTAALALARAAREHPSLELLHLYF-N-ELSS  253 (372)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECTT-S-SCCH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEeccC-C-CCCH
Confidence            663221    1245678999999998 4 5543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.44  E-value=0.0063  Score=56.25  Aligned_cols=31  Identities=16%  Similarity=0.242  Sum_probs=13.5

Q ss_pred             cccccEEEeeCCCCCcccccccCCCCCccEEEe
Q 037573          176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEI  208 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  208 (357)
                      +.+|+.+.+..  .+..+......-.+|+.+.+
T Consensus       159 c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~i  189 (394)
T 4gt6_A          159 CYSLHTVTLPD--SVTAIEERAFTGTALTQIHI  189 (394)
T ss_dssp             CTTCCEEECCT--TCCEECTTTTTTCCCSEEEE
T ss_pred             ccccccccccc--eeeEeccccccccceeEEEE
Confidence            44555555543  23333332222344555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.43  E-value=0.0023  Score=59.22  Aligned_cols=187  Identities=13%  Similarity=0.148  Sum_probs=83.2

Q ss_pred             ccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-c
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH-E  196 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~  196 (357)
                      +..+.+|+.+.+...  +..++. .+..+..|+.+.+..  ....+....+.      ..+|+.+.+..  .+..+.. .
T Consensus       181 F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~--~~~~i~~~~~~------~~~l~~i~ip~--~~~~i~~~~  248 (394)
T 4fs7_A          181 FSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPN--SLYYLGDFALS------KTGVKNIIIPD--SFTELGKSV  248 (394)
T ss_dssp             TTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTT------TCCCCEEEECT--TCCEECSST
T ss_pred             ccCCCCceEEEcCCC--ceEeCchhhccccccceeecCC--CceEeehhhcc------cCCCceEEECC--Cceeccccc
Confidence            445566666666432  344332 344556666655543  22223322222      44566665543  2233322 2


Q ss_pred             cCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCC--CCC
Q 037573          197 LHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDY--PTN  273 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~  273 (357)
                      +..+.+|+.+.+..  .+..+....+ .+..++.+..... .+..  ..+..+.+|+.+.+.+  .++.+....+  +.+
T Consensus       249 f~~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~-~i~~--~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~  321 (394)
T 4fs7_A          249 FYGCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSV-IVPE--KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTS  321 (394)
T ss_dssp             TTTCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSS-EECT--TTTTTCTTCCEEEECT--TCCEECTTTTTTCTT
T ss_pred             ccccccceeEEcCC--CcceeeccccccccccceeccCce-eecc--cccccccccccccccc--ccceechhhhcCCCC
Confidence            33355566655543  2222332111 1124444443221 1111  1344555566655543  3444444322  456


Q ss_pred             cceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-CCCCcceEec
Q 037573          274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-GSTSLTRLWI  329 (357)
Q Consensus       274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-~~~sL~~L~l  329 (357)
                      |+++++..  .++.+...++..+.+|+++.+..   .++.++...+ .+++|+.+.+
T Consensus       322 L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~---~l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          322 LVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL---SLRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             CCEECCCT--TCCEECTTTTTTCTTCCEECCCT---TCCEECTTTBTTCTTCCEEEE
T ss_pred             CCEEEeCC--cccEEhHHhccCCCCCCEEEECc---cccEehHHHhhCCCCCCEEEE
Confidence            66666642  35555555555666666666543   2555544332 2344444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.18  E-value=0.036  Score=50.67  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=28.7

Q ss_pred             cccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeC
Q 037573          118 VIQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNG  186 (357)
Q Consensus       118 ~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~  186 (357)
                      .|..+.+|+.+.+..  .++.++. .+..+ .|..+.+.  .++..++...+.      ..+|+.+.+..
T Consensus        64 aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~--~~l~~I~~~aF~------~~~L~~i~lp~  122 (379)
T 4h09_A           64 NFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGM--ERVKKFGDYVFQ------GTDLDDFEFPG  122 (379)
T ss_dssp             TTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEEC--TTCCEECTTTTT------TCCCSEEECCT
T ss_pred             HhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECC--ceeeEeccceec------cCCcccccCCC
Confidence            355566666666643  2444443 23333 45555553  234445544443      34566666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.18  E-value=0.0059  Score=56.44  Aligned_cols=117  Identities=16%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCCCcc
Q 037573          200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLT  275 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~  275 (357)
                      ..+|+.+.+..  .+..++...+ .+.+++.+.+...  ...+ ...+..+..++.+.....    .++..  ..+.+|+
T Consensus       229 ~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~  300 (394)
T 4fs7_A          229 KTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLT  300 (394)
T ss_dssp             TCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCC
T ss_pred             cCCCceEEECC--CceecccccccccccceeEEcCCC--cceeeccccccccccceeccCce----eecccccccccccc
Confidence            34555555543  2233332111 1235666655432  1122 123445566666555431    13333  2267899


Q ss_pred             eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-CCCCcceEec
Q 037573          276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-GSTSLTRLWI  329 (357)
Q Consensus       276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-~~~sL~~L~l  329 (357)
                      .+.+.+  .++.+...++..+.+|+++++..   .++.++...+ .+.+|+.+.+
T Consensus       301 ~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~---~v~~I~~~aF~~c~~L~~i~l  350 (394)
T 4fs7_A          301 EVKLLD--SVKFIGEEAFESCTSLVSIDLPY---LVEEIGKRSFRGCTSLSNINF  350 (394)
T ss_dssp             EEEECT--TCCEECTTTTTTCTTCCEECCCT---TCCEECTTTTTTCTTCCEECC
T ss_pred             cccccc--ccceechhhhcCCCCCCEEEeCC---cccEEhHHhccCCCCCCEEEE
Confidence            998864  47777777788899999998864   3666654432 3455555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.08  E-value=0.02  Score=52.78  Aligned_cols=80  Identities=13%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             hhccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-C
Q 037573          244 GIHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-G  320 (357)
Q Consensus       244 ~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-~  320 (357)
                      .+..+++|+.+.+..  .++.++...+  +.+|+++.+..  .++.+...++..+.+|+++.|-.   .++.++...+ .
T Consensus       283 aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~---sv~~I~~~aF~~  355 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS---SVTKIPESAFSN  355 (394)
T ss_dssp             TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT---TCCBCCGGGGTT
T ss_pred             ccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc---ccCEEhHhHhhC
Confidence            345566666666643  4555655533  56777777753  36666666666777777777753   3555554332 3


Q ss_pred             CCCcceEecc
Q 037573          321 STSLTRLWIR  330 (357)
Q Consensus       321 ~~sL~~L~l~  330 (357)
                      +.+|+.+.+.
T Consensus       356 C~~L~~i~~~  365 (394)
T 4gt6_A          356 CTALNNIEYS  365 (394)
T ss_dssp             CTTCCEEEES
T ss_pred             CCCCCEEEEC
Confidence            4455555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.84  E-value=0.053  Score=49.55  Aligned_cols=79  Identities=11%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             hccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-CC
Q 037573          245 IHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-GS  321 (357)
Q Consensus       245 ~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-~~  321 (357)
                      +..+.+|+.+.+..  .++.++...+  +.+|+.+.+.+ +.++.+...++..+.+|+++.+-.   .++.++...+ .+
T Consensus       259 F~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~---~l~~I~~~aF~~C  332 (379)
T 4h09_A          259 LQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT---ALKTIQVYAFKNC  332 (379)
T ss_dssp             TTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT---TCCEECTTTTTTC
T ss_pred             cceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc---cccEEHHHHhhCC
Confidence            44556666666643  3555544422  56777777765 456666666666777777777653   3555544332 23


Q ss_pred             CCcceEec
Q 037573          322 TSLTRLWI  329 (357)
Q Consensus       322 ~sL~~L~l  329 (357)
                      .+|+.+.+
T Consensus       333 ~~L~~i~i  340 (379)
T 4h09_A          333 KALSTISY  340 (379)
T ss_dssp             TTCCCCCC
T ss_pred             CCCCEEEE
Confidence            44444433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.03  E-value=0.0041  Score=51.10  Aligned_cols=12  Identities=8%  Similarity=-0.075  Sum_probs=6.4

Q ss_pred             ccCCccEEEEec
Q 037573          295 RLNSLKELIVNG  306 (357)
Q Consensus       295 ~l~~L~~L~l~~  306 (357)
                      ..++|++|++++
T Consensus       149 ~n~~L~~L~L~~  160 (185)
T 1io0_A          149 KNTTLLKFGYHF  160 (185)
T ss_dssp             HCSSCCEEECCC
T ss_pred             hCCCcCEEeccC
Confidence            345555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.98  E-value=0.0048  Score=53.87  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=16.9

Q ss_pred             CCcccEEeeccCcCccc---cccccCCCCCcCEEeecC
Q 037573          122 LCRLKYLELIDCECLVN---LPQALHCLSSLTEITVAG  156 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~---lp~~~~~l~~L~~L~i~~  156 (357)
                      +++|+.|+|+++. +..   +|..+..+++|+.|++++
T Consensus       169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~  205 (267)
T 3rw6_A          169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG  205 (267)
T ss_dssp             CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT
T ss_pred             CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC
Confidence            4555556655543 222   233334555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.86  E-value=0.0063  Score=53.11  Aligned_cols=80  Identities=13%  Similarity=0.108  Sum_probs=45.0

Q ss_pred             cccccEEEeeCCCCCcc---cccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhH-------hh
Q 037573          176 ITSFENIMVNGCDNLKC---LPHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALL-------NG  244 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~---lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~-------~~  244 (357)
                      +++|+.|+++++. +..   +|..+..+++|+.|++++ +.+..+.. ..+...+|++|++++++-...+|       ..
T Consensus       169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            6677777777743 433   334455677777777776 34444422 11211167777777765333222       23


Q ss_pred             hccCCcccceeec
Q 037573          245 IHRLTSHQQLTVE  257 (357)
Q Consensus       245 ~~~l~~L~~L~l~  257 (357)
                      +..+++|+.|+-.
T Consensus       247 l~~~P~L~~LDg~  259 (267)
T 3rw6_A          247 RERFPKLLRLDGH  259 (267)
T ss_dssp             HHHCTTCCEESSC
T ss_pred             HHHCcccCeECCc
Confidence            5667777777643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.75  E-value=0.0033  Score=51.70  Aligned_cols=103  Identities=16%  Similarity=0.101  Sum_probs=53.4

Q ss_pred             CcceEEeccCCcch-----hhHhhhccCCcccceeeccCcCcccc-----CCC-CCCCCcceEEecCCCCceec----cc
Q 037573          226 NLTAVCVINCEKLE-----ALLNGIHRLTSHQQLTVEQCPGIVAI-----PEN-DYPTNLTILKITDVNIFKSL----FQ  290 (357)
Q Consensus       226 ~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l-----~~~-~~~~~L~~L~l~~c~~l~~~----~~  290 (357)
                      +|++|++++|..++     .+...+...++|++|++++| .+..-     ... ...++|++|++++ +.+...    ..
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~~~l~  114 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGILALV  114 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHHHHHH
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHHHHHH
Confidence            56666665552222     23344555566666666664 23210     000 0135677777777 445521    11


Q ss_pred             ccccccCCccEEEE--eccCCCCCc-----CCCCCCCCCCcceEecccC
Q 037573          291 WGLHRLNSLKELIV--NGEFPDMIS-----FPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       291 ~~l~~l~~L~~L~l--~~~c~~l~~-----l~~~~~~~~sL~~L~l~~c  332 (357)
                      ..+...++|++|++  .+  +.+..     +...+...++|++|+++++
T Consensus       115 ~~L~~n~~L~~L~L~~~~--N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQS--QPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HGGGGCSSCCEEECCCCS--SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHhCCCceEEEecCCC--CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            23556678888888  54  55543     2222223467888887765

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=95.30  E-value=0.0042  Score=46.77  Aligned_cols=31  Identities=23%  Similarity=0.562  Sum_probs=27.1

Q ss_pred             cchhhhhhhhhhhhhhhhhhhhccCchHHhh
Q 037573            7 AISDDIWLGELQNLAYHLKDILDELDTEALQ   37 (357)
Q Consensus         7 ~~~~~~Wl~~~~~~~~~~~dvld~~~~~~~~   37 (357)
                      +..++.|+.++|+++|++||++|++..+...
T Consensus        54 d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~   84 (115)
T 3qfl_A           54 DSQDKLWADEVRELSYVIEDVVDKFLVQVDG   84 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4567899999999999999999999888653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.29  E-value=0.11  Score=39.81  Aligned_cols=41  Identities=24%  Similarity=0.342  Sum_probs=27.9

Q ss_pred             ccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573          264 AIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       264 ~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      .+|. +++++|+.|+|++ |.++.++...+..+++|++|+|.+
T Consensus        24 ~vP~-~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           24 SLPT-AFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             TSCS-CCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred             cCCC-CCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence            5553 3556777777777 667777666666777777777776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=84.82  E-value=1.2  Score=33.79  Aligned_cols=33  Identities=12%  Similarity=0.125  Sum_probs=15.9

Q ss_pred             CccEEEecCCCCCcccCCCCCC-CCCcceEEeccC
Q 037573          202 RLQQIEIRNCPSLVSFPERGLP-STNLTAVCVINC  235 (357)
Q Consensus       202 ~L~~L~l~~c~~l~~l~~~~~~-~~~L~~L~l~~c  235 (357)
                      +|+.|++++ +.+..++.+.+. +++|+.|++.++
T Consensus        32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence            455555554 345555543321 225555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.49
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.48
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.45
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.37
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.33
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.26
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.22
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.93
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.92
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.85
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.85
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.83
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.79
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.7
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.77
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.4
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	87.55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.68  E-value=9.8e-17  Score=143.67  Aligned_cols=247  Identities=15%  Similarity=0.095  Sum_probs=168.5

Q ss_pred             ccceEEeeccCCCCC---CCCccccccchhHHHhhhccccc-ccchhhhhhhccCCccccccccccccCCcccccCCCcc
Q 037573           50 SKAWKLIIRTCCSNF---NTPSLMFNASMRYKLKDSTTRLQ-EIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRL  125 (357)
Q Consensus        50 ~~l~~l~l~~c~~~~---~~~~l~~l~~L~~l~~~~~~~l~-~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  125 (357)
                      .+++.|+++++....   .++.++.+++|+++.+.++..+. .+                          |..++.+++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~i--------------------------P~~i~~L~~L  103 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI--------------------------PPAIAKLTQL  103 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC--------------------------CGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccc--------------------------cccccccccc
Confidence            468888888775321   23456777777777776544332 12                          3346778888


Q ss_pred             cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCc-c
Q 037573          126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRL-Q  204 (357)
Q Consensus       126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L-~  204 (357)
                      ++|+++++......+..+..+..|+.++++++.....+|..+.+      +++|+.++++++.....+|..+..+.++ +
T Consensus       104 ~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~------l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~  177 (313)
T d1ogqa_         104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS------LPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG------CTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             chhhhccccccccccccccchhhhcccccccccccccCchhhcc------Ccccceeecccccccccccccccccccccc
Confidence            88888887654445556777888888888876656666666555      7888888888865555677777777765 5


Q ss_pred             EEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCC
Q 037573          205 QIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNI  284 (357)
Q Consensus       205 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~  284 (357)
                      .+.+++ ..+.......+.......+++.++.....+|..+..+++|+.+++.++.....++..+.+++|+.|++++ +.
T Consensus       178 ~l~~~~-n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~-N~  255 (313)
T d1ogqa_         178 SMTISR-NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN-NR  255 (313)
T ss_dssp             EEECCS-SEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS-SC
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCcc-Ce
Confidence            666665 3444333322322245567777777666777888889999999998875444555556688999999999 66


Q ss_pred             ce-ecccccccccCCccEEEEeccCCCCC-cCCCCCCCCCCcceEecccCcc
Q 037573          285 FK-SLFQWGLHRLNSLKELIVNGEFPDMI-SFPQEEIGSTSLTRLWIRDFQN  334 (357)
Q Consensus       285 l~-~~~~~~l~~l~~L~~L~l~~~c~~l~-~l~~~~~~~~sL~~L~l~~c~~  334 (357)
                      ++ .+|.+ +..+++|++|+|++  +++. .+|.. +.+.+|+.+++.+-+.
T Consensus       256 l~g~iP~~-l~~L~~L~~L~Ls~--N~l~g~iP~~-~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         256 IYGTLPQG-LTQLKFLHSLNVSF--NNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CEECCCGG-GGGCTTCCEEECCS--SEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             ecccCChH-HhCCCCCCEEECcC--CcccccCCCc-ccCCCCCHHHhCCCcc
Confidence            77 56554 88999999999998  5665 67753 3556666666665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-14  Score=125.91  Aligned_cols=169  Identities=19%  Similarity=0.264  Sum_probs=75.6

Q ss_pred             cccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573          124 RLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR  202 (357)
Q Consensus       124 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  202 (357)
                      ++++|+++++. +..+|. .+..+++|++|+++++ .+..++....       +++|++|+++++ .+...|..+..+++
T Consensus        32 ~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~-------l~~L~~L~Ls~N-~l~~~~~~~~~l~~  101 (266)
T d1p9ag_          32 DTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGT-------LPVLGTLDLSHN-QLQSLPLLGQTLPA  101 (266)
T ss_dssp             TCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSC-------CTTCCEEECCSS-CCSSCCCCTTTCTT
T ss_pred             CCCEEECcCCc-CCCcCHHHhhccccccccccccc-cccccccccc-------cccccccccccc-cccccccccccccc
Confidence            45555555442 334332 3444555555555542 3444433222       445555555543 23444444444455


Q ss_pred             ccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCC--CCCCcceEEec
Q 037573          203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKIT  280 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~  280 (357)
                      |+.|+++++. +..++                       +..+..+.++++|++.+ +.+..++...  ..++|+.++++
T Consensus       102 L~~L~l~~~~-~~~~~-----------------------~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_         102 LTVLDVSFNR-LTSLP-----------------------LGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             CCEEECCSSC-CCCCC-----------------------SSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccccccccc-cceee-----------------------ccccccccccccccccc-cccceeccccccccccchhcccc
Confidence            5555544432 22222                       22333444445555544 2343343331  13455555555


Q ss_pred             CCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573          281 DVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR  330 (357)
Q Consensus       281 ~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~  330 (357)
                      + +.++.+++..+..+++|++|++++  +.++.+|.+++..++|++|+++
T Consensus       157 ~-N~l~~~~~~~~~~l~~L~~L~Ls~--N~L~~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         157 N-NNLTELPAGLLNGLENLDTLLLQE--NSLYTIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             T-SCCSCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCCCSEEECC
T ss_pred             c-ccccccCccccccccccceeeccc--CCCcccChhHCCCCCCCEEEec
Confidence            5 344444443344455555555554  3455555544445555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=3.3e-14  Score=126.37  Aligned_cols=206  Identities=14%  Similarity=0.159  Sum_probs=137.7

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccc-ccccccc---------------cccccEE
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAI---------------ITSFENI  182 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~---------------l~~L~~L  182 (357)
                      +..+++|++|+++++....-.|..+..+++|++|+++++ .++.+|.... .+..|..               ...+..+
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l  129 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV  129 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred             hhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccchhhhhhhhhccccchhhhhhhhhhcccccccc
Confidence            445566666666665533223445566666666666653 3555544332 1111111               3344555


Q ss_pred             EeeCCCCC--cccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCc
Q 037573          183 MVNGCDNL--KCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCP  260 (357)
Q Consensus       183 ~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  260 (357)
                      ++..+...  ...+..+..+++|+.++++++ .+..++....+  +|++|+++++......+..+..++.+++|+++++ 
T Consensus       130 ~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-  205 (305)
T d1xkua_         130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-  205 (305)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCT--TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-
T ss_pred             ccccccccccCCCccccccccccCccccccC-CccccCcccCC--ccCEEECCCCcCCCCChhHhhccccccccccccc-
Confidence            55443211  122344566888999999875 56677766655  9999999987766666778889999999999985 


Q ss_pred             CccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-------CCCCcceEeccc
Q 037573          261 GIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-------GSTSLTRLWIRD  331 (357)
Q Consensus       261 ~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-------~~~sL~~L~l~~  331 (357)
                      .+..++...+  +++|++|++++ +.++.++. ++..+++|+.|++++  ++++.++...+       .+++|+.|++++
T Consensus       206 ~l~~~~~~~~~~l~~L~~L~L~~-N~L~~lp~-~l~~l~~L~~L~Ls~--N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         206 SISAVDNGSLANTPHLRELHLNN-NKLVKVPG-GLADHKYIQVVYLHN--NNISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCS-SCCSSCCT-TTTTCSSCCEEECCS--SCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             cccccccccccccccceeeeccc-cccccccc-ccccccCCCEEECCC--CccCccChhhccCcchhcccCCCCEEECCC
Confidence            6777765533  68999999999 57888865 488899999999998  57888875442       357788888887


Q ss_pred             Cc
Q 037573          332 FQ  333 (357)
Q Consensus       332 c~  333 (357)
                      -|
T Consensus       282 N~  283 (305)
T d1xkua_         282 NP  283 (305)
T ss_dssp             SS
T ss_pred             Cc
Confidence            65

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.54  E-value=7e-15  Score=131.36  Aligned_cols=206  Identities=14%  Similarity=0.063  Sum_probs=149.7

Q ss_pred             cccccCCCcccEEeeccCcCcc-ccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc
Q 037573          116 TSVIQVLCRLKYLELIDCECLV-NLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP  194 (357)
Q Consensus       116 ~~~~~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp  194 (357)
                      ++.++.+++|++|+++++..+. .+|.+++++++|++|+++++.-....+..+..      +++|+.++++.+.....+|
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~------~~~L~~l~l~~N~~~~~~p  142 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------IKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG------CTTCCEEECCSSEEESCCC
T ss_pred             ChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccc------hhhhcccccccccccccCc
Confidence            5668899999999999865444 69999999999999999986433333333345      7899999999887777889


Q ss_pred             cccCCCCCccEEEecCCCCCcccCCCCCCCCCc-ceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCC
Q 037573          195 HELHKLSRLQQIEIRNCPSLVSFPERGLPSTNL-TAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPT  272 (357)
Q Consensus       195 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L-~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~  272 (357)
                      ..++++++|+.++++++.....+|.......++ +.+.++++.-....|..+..+.. ..+++..+.....+|.. +..+
T Consensus       143 ~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~  221 (313)
T d1ogqa_         143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTS
T ss_pred             hhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            999999999999999865444566532222244 77777665433344555555543 46777765444444443 4468


Q ss_pred             CcceEEecCCCCceecccccccccCCccEEEEeccCCCCC-cCCCCCCCCCCcceEecccC
Q 037573          273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMI-SFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~-~l~~~~~~~~sL~~L~l~~c  332 (357)
                      +++.++++++ .+...++ .+..+++|+.|++++  +++. .+|..+..+++|++|++++.
T Consensus       222 ~l~~l~~~~~-~l~~~~~-~~~~~~~L~~L~Ls~--N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         222 NTQKIHLAKN-SLAFDLG-KVGLSKNLNGLDLRN--NRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCSEEECCSS-EECCBGG-GCCCCTTCCEEECCS--SCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccc-ccccccc-ccccccccccccCcc--CeecccCChHHhCCCCCCEEECcCC
Confidence            9999999984 4554333 367889999999998  5665 89998888899999999864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.6e-15  Score=132.49  Aligned_cols=179  Identities=17%  Similarity=0.162  Sum_probs=129.3

Q ss_pred             CCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcc--ccccc
Q 037573          121 VLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKC--LPHEL  197 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~--lp~~l  197 (357)
                      ...+|++|++++|..-.. ++..+..+++|++|++++|.--...+..+..      +++|+.|++++|..+..  +....
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~------~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK------NSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT------CTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc------CCCCcCccccccccccccccchhh
Confidence            456899999998864333 4455778999999999998533333333333      88999999999987753  23334


Q ss_pred             CCCCCccEEEecCCCCCcccCC-----CCCCCCCcceEEeccCCc-ch--hhHhhhccCCcccceeeccCcCccccC--C
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPE-----RGLPSTNLTAVCVINCEK-LE--ALLNGIHRLTSHQQLTVEQCPGIVAIP--E  267 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~-----~~~~~~~L~~L~l~~c~~-l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~--~  267 (357)
                      ..+++|++|++++|..+..-..     ...+  +|+.|++++|.. ++  .+.....++++|++|++++|..++.-.  .
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~  195 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  195 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCT--TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             HHHHhccccccccccccccccchhhhccccc--ccchhhhcccccccccccccccccccccccccccccccCCCchhhhh
Confidence            5689999999999987653211     2233  899999998743 32  344445678999999999998776322  2


Q ss_pred             CCCCCCcceEEecCCCCceecccccccccCCccEEEEeccC
Q 037573          268 NDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEF  308 (357)
Q Consensus       268 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c  308 (357)
                      -..+++|++|++++|+.+++.....+..+++|++|++.+ |
T Consensus       196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~-~  235 (284)
T d2astb2         196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG-I  235 (284)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT-S
T ss_pred             hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC-C
Confidence            233689999999999988855444577889999999998 7

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=2.5e-13  Score=124.06  Aligned_cols=206  Identities=17%  Similarity=0.217  Sum_probs=113.0

Q ss_pred             ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccc------------cccccc----------
Q 037573          117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS------------VAEMFA----------  174 (357)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~------------~L~~L~----------  174 (357)
                      +.++.+++|++|+++++. +..++. ++.+++|+.|++.++. +..++....            .+..+.          
T Consensus        82 ~~l~~L~~L~~L~L~~n~-i~~i~~-l~~l~~L~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  158 (384)
T d2omza2          82 TPLKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ  158 (384)
T ss_dssp             GGGTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSE
T ss_pred             ccccCCcccccccccccc-cccccc-cccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            347778888888888875 455554 7788888888876632 221111100            000000          


Q ss_pred             ------------------------------------ccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccC
Q 037573          175 ------------------------------------IITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFP  218 (357)
Q Consensus       175 ------------------------------------~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~  218 (357)
                                                          .+++++.++++++. +..++. ....++|+.|+++++ .++.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~-i~~~~~-~~~~~~L~~L~l~~n-~l~~~~  235 (384)
T d2omza2         159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGN-QLKDIG  235 (384)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccceeeccCCc-cCCCCc-ccccCCCCEEECCCC-CCCCcc
Confidence                                                04555555555532 333322 233455555555553 333332


Q ss_pred             C-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccC---------------------cCccccCCCCCCCCcce
Q 037573          219 E-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQC---------------------PGIVAIPENDYPTNLTI  276 (357)
Q Consensus       219 ~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c---------------------~~l~~l~~~~~~~~L~~  276 (357)
                      . ..++  +|+.|+++++. ++.++ .+..+++|++|+++++                     ..+..++....+++++.
T Consensus       236 ~l~~l~--~L~~L~l~~n~-l~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~  311 (384)
T d2omza2         236 TLASLT--NLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY  311 (384)
T ss_dssp             GGGGCT--TCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSE
T ss_pred             hhhccc--ccchhccccCc-cCCCC-cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCe
Confidence            2 2222  55555555432 33332 2344445555554432                     12222222233578888


Q ss_pred             EEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573          277 LKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       277 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      |++++ +.++.+++  +..+++|++|++++ | .++.++. +..+++|++|+++++ .++.+.
T Consensus       312 L~ls~-n~l~~l~~--l~~l~~L~~L~L~~-n-~l~~l~~-l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         312 LTLYF-NNISDISP--VSSLTKLQRLFFAN-N-KVSDVSS-LANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             EECCS-SCCSCCGG--GGGCTTCCEEECCS-S-CCCCCGG-GGGCTTCCEEECCSS-CCCBCG
T ss_pred             EECCC-CCCCCCcc--cccCCCCCEEECCC-C-CCCCChh-HcCCCCCCEEECCCC-cCCCCh
Confidence            88888 56776643  67888999999988 5 7777763 446788999988765 566553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=1.9e-13  Score=116.11  Aligned_cols=190  Identities=16%  Similarity=0.223  Sum_probs=138.5

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      ...+.+|+.|.+.+|. +..++ +++.+++|++|+++++ .+..+++. ..      +++|+.++++++. ++.++ .+.
T Consensus        37 ~~~l~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~l-~~------l~~l~~l~~~~n~-~~~i~-~l~  104 (227)
T d1h6ua2          37 QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-QITDLAPL-KN------LTKITELELSGNP-LKNVS-AIA  104 (227)
T ss_dssp             HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGGG-TT------CCSCCEEECCSCC-CSCCG-GGT
T ss_pred             HHHcCCcCEEECCCCC-CCcch-hHhcCCCCcEeecCCc-eeeccccc-cc------ccccccccccccc-ccccc-ccc
Confidence            4557899999999985 67775 4889999999999985 45555432 23      8899999999864 56664 578


Q ss_pred             CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEE
Q 037573          199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILK  278 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~  278 (357)
                      .+++|+.+.++++......+....+  .++.+.+.++.. ... ..+...++|++|++.++ .+...+..+.+++|+.|+
T Consensus       105 ~l~~L~~l~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~-~~~-~~~~~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~  179 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQITDVTPLAGLS--NLQVLYLDLNQI-TNI-SPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLK  179 (227)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGTTCT--TCCEEECCSSCC-CCC-GGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEE
T ss_pred             ccccccccccccccccccchhcccc--chhhhhchhhhh-chh-hhhcccccccccccccc-ccccchhhcccccceecc
Confidence            8999999999986543322223333  888898877553 333 24677889999999885 455444444578999999


Q ss_pred             ecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          279 ITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       279 l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      +++ +.++.+++  +..+++|++|++++ | +++.++. +..+++|++|++++
T Consensus       180 Ls~-n~l~~l~~--l~~l~~L~~L~Ls~-N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         180 ADD-NKISDISP--LASLPNLIEVHLKN-N-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCS-SCCCCCGG--GGGCTTCCEEECTT-S-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             cCC-CccCCChh--hcCCCCCCEEECcC-C-cCCCCcc-cccCCCCCEEEeeC
Confidence            999 57887653  68899999999998 5 7888874 33567777777653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3e-13  Score=117.79  Aligned_cols=156  Identities=20%  Similarity=0.221  Sum_probs=120.7

Q ss_pred             ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc
Q 037573          117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~  196 (357)
                      ..+..+++|++|+++++. ++.+|. ++.+++|++|+++++ .+..++..+..      +++|+.|+++++....-.+..
T Consensus        49 ~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~------l~~L~~L~l~~~~~~~~~~~~  119 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQT------LPALTVLDVSFNRLTSLPLGA  119 (266)
T ss_dssp             GGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTT------CTTCCEEECCSSCCCCCCSST
T ss_pred             HHhhcccccccccccccc-cccccc-ccccccccccccccc-ccccccccccc------ccccccccccccccceeeccc
Confidence            457889999999999984 778876 678999999999985 57666666556      899999999987543333455


Q ss_pred             cCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCCC-CCCC
Q 037573          197 LHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEND-YPTN  273 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~  273 (357)
                      +..+.+++.|+++++ .+..++...+ .+++++.++++++. ++.++ ..+..+++|++|++++ +.++.+|.+. ..++
T Consensus       120 ~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~  196 (266)
T d1p9ag_         120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHL  196 (266)
T ss_dssp             TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCC
T ss_pred             ccccccccccccccc-ccceeccccccccccchhccccccc-ccccCccccccccccceeeccc-CCCcccChhHCCCCC
Confidence            667899999999974 6677776433 23489999998854 66665 4578899999999998 4788888763 3788


Q ss_pred             cceEEecCCCCc
Q 037573          274 LTILKITDVNIF  285 (357)
Q Consensus       274 L~~L~l~~c~~l  285 (357)
                      |+.|++++ |.+
T Consensus       197 L~~L~L~~-Np~  207 (266)
T d1p9ag_         197 LPFAFLHG-NPW  207 (266)
T ss_dssp             CSEEECCS-CCB
T ss_pred             CCEEEecC-CCC
Confidence            99999998 443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=7.7e-13  Score=120.70  Aligned_cols=191  Identities=20%  Similarity=0.270  Sum_probs=135.6

Q ss_pred             ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc
Q 037573          117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~  196 (357)
                      .....+++++.+.++++. +..++. ....++|++|+++++ .+..++.. ..      +++|+.|+++++. +..++. 
T Consensus       191 ~~~~~l~~~~~l~l~~n~-i~~~~~-~~~~~~L~~L~l~~n-~l~~~~~l-~~------l~~L~~L~l~~n~-l~~~~~-  258 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGN-QLKDIGTL-AS------LTNLTDLDLANNQ-ISNLAP-  258 (384)
T ss_dssp             GGGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGGG-GG------CTTCSEEECCSSC-CCCCGG-
T ss_pred             cccccccccceeeccCCc-cCCCCc-ccccCCCCEEECCCC-CCCCcchh-hc------ccccchhccccCc-cCCCCc-
Confidence            345567788888887764 444443 456778888888875 45555432 22      7888999988864 566653 


Q ss_pred             cCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcc
Q 037573          197 LHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLT  275 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~  275 (357)
                      ++.+++|+.|+++++ .+..++. ..++  .++.+.+.++. ++.+ ..+..++++++|+++++ +++.++....+++|+
T Consensus       259 ~~~~~~L~~L~l~~~-~l~~~~~~~~~~--~l~~l~~~~n~-l~~~-~~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~  332 (384)
T d2omza2         259 LSGLTKLTELKLGAN-QISNISPLAGLT--ALTNLELNENQ-LEDI-SPISNLKNLTYLTLYFN-NISDISPVSSLTKLQ  332 (384)
T ss_dssp             GTTCTTCSEEECCSS-CCCCCGGGTTCT--TCSEEECCSSC-CSCC-GGGGGCTTCSEEECCSS-CCSCCGGGGGCTTCC
T ss_pred             ccccccCCEeeccCc-ccCCCCcccccc--ccccccccccc-cccc-cccchhcccCeEECCCC-CCCCCcccccCCCCC
Confidence            777888999988864 4444443 3444  78888887644 4554 35778899999999985 677765444578999


Q ss_pred             eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      +|++++| .++.++  .+..+++|++|++++  ++++.++. +..+++|+.|++++
T Consensus       333 ~L~L~~n-~l~~l~--~l~~l~~L~~L~l~~--N~l~~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         333 RLFFANN-KVSDVS--SLANLTNINWLSAGH--NQISDLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             EEECCSS-CCCCCG--GGGGCTTCCEEECCS--SCCCBCGG-GTTCTTCSEEECCC
T ss_pred             EEECCCC-CCCCCh--hHcCCCCCCEEECCC--CcCCCChh-hccCCCCCEeeCCC
Confidence            9999994 788765  378899999999997  68888764 33567888887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.5e-13  Score=115.63  Aligned_cols=195  Identities=17%  Similarity=0.254  Sum_probs=147.1

Q ss_pred             CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCccc-ccccCC
Q 037573          123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCL-PHELHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~  199 (357)
                      +++++|+|+++. ++.+|. .+..+++|++|++++. .+..++.... .      ++.++.+.+.....+..+ |..+..
T Consensus        32 ~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~------~~~~~~l~~~~~~~~~~l~~~~~~~  103 (284)
T d1ozna_          32 AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTG------LALLEQLDLSDNAQLRSVDPATFHG  103 (284)
T ss_dssp             TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT------CTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCCCEEECcCCc-CCCCCHHHhhccccccccccccc-cccccccccccc------cccccccccccccccccccchhhcc
Confidence            578999999975 778775 5888999999999984 5666655443 4      678888888776777777 456778


Q ss_pred             CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCCCC--CCCcc
Q 037573          200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPENDY--PTNLT  275 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~  275 (357)
                      +++|+.|+++++. +..++...+ ..++|+.+++.+ +.++.+| ..+..+++|++|+++++ .++.++...+  +++|+
T Consensus       104 l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         104 LGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLD  180 (284)
T ss_dssp             CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred             cccCCEEecCCcc-cccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccC-cccccchhhhccccccc
Confidence            9999999999864 444443222 234899999987 4577775 45778899999999985 6787776533  78999


Q ss_pred             eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCC-CCCCCCCcceEeccc
Q 037573          276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQ-EEIGSTSLTRLWIRD  331 (357)
Q Consensus       276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~-~~~~~~sL~~L~l~~  331 (357)
                      .+++++ +.++.+.+..+..+++|++|++++  +.+..++. .+...++|++|++++
T Consensus       181 ~l~l~~-N~l~~i~~~~f~~l~~L~~L~l~~--N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         181 RLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFA--NNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             EEECCS-SCCCEECTTTTTTCTTCCEEECCS--SCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             hhhhhh-ccccccChhHhhhhhhcccccccc--cccccccccccccccccCEEEecC
Confidence            999998 667777666788999999999998  67777764 334678899998875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=1.1e-12  Score=116.32  Aligned_cols=198  Identities=14%  Similarity=0.206  Sum_probs=136.1

Q ss_pred             CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573          123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL  200 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l  200 (357)
                      +++++|+++++. ++.+|. .+.++++|++|+++++. +..+++ .+.+      +++|+.|+++++ .++.+|..+  .
T Consensus        31 ~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~------l~~L~~L~l~~n-~l~~l~~~~--~   99 (305)
T d1xkua_          31 PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAP------LVKLERLYLSKN-QLKELPEKM--P   99 (305)
T ss_dssp             TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTT------CTTCCEEECCSS-CCSBCCSSC--C
T ss_pred             CCCCEEECcCCc-CCCcChhHhhcccccccccccccc-ccccchhhhhC------CCccCEecccCC-ccCcCccch--h
Confidence            689999999974 788876 68899999999999965 445543 4446      889999999886 477777644  3


Q ss_pred             CCccEEEecCCCCCcccCC--------------------------CC-CCCCCcceEEeccCCcchhhHhhhccCCcccc
Q 037573          201 SRLQQIEIRNCPSLVSFPE--------------------------RG-LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQ  253 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~l~~--------------------------~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  253 (357)
                      +.+..|...+. .+..++.                          .. ..+++|+.+++.++. +..+|..  .+++|++
T Consensus       100 ~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~--~~~~L~~  175 (305)
T d1xkua_         100 KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG--LPPSLTE  175 (305)
T ss_dssp             TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS--CCTTCSE
T ss_pred             hhhhhhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcc--cCCccCE
Confidence            45666665542 2322221                          00 011366677776543 4444432  3567777


Q ss_pred             eeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573          254 LTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       254 L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c  332 (357)
                      |+++++......+.. ..++.++.|++++ +.++.+++..+..+++|++|++++  +.++.+|.++..+++|++|++++.
T Consensus       176 L~l~~n~~~~~~~~~~~~~~~l~~L~~s~-n~l~~~~~~~~~~l~~L~~L~L~~--N~L~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         176 LHLDGNKITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNN--NKLVKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCS--SCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             EECCCCcCCCCChhHhhcccccccccccc-ccccccccccccccccceeeeccc--ccccccccccccccCCCEEECCCC
Confidence            777774333322221 2356788888888 567777666678899999999999  489999988877899999999986


Q ss_pred             ccccccc
Q 037573          333 QNLEYIS  339 (357)
Q Consensus       333 ~~L~~l~  339 (357)
                       +++.++
T Consensus       253 -~i~~i~  258 (305)
T d1xkua_         253 -NISAIG  258 (305)
T ss_dssp             -CCCCCC
T ss_pred             -ccCccC
Confidence             466654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.9e-14  Score=124.13  Aligned_cols=180  Identities=16%  Similarity=0.176  Sum_probs=129.7

Q ss_pred             CCCCCcCEEeecCCCcchh-ccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC---
Q 037573          144 HCLSSLTEITVAGCTKLVS-FLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE---  219 (357)
Q Consensus       144 ~~l~~L~~L~i~~c~~l~~-~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~---  219 (357)
                      .....|++|++++|.-... +......      +++|++|++++|..-...+..+.++++|++|++++|..++....   
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~------c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l  116 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQ------CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL  116 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTT------BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHh------CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchh
Confidence            3556899999999753222 2222224      89999999999864445567788899999999999988764321   


Q ss_pred             -CCCCCCCcceEEeccCCcchh--hHhhhcc-CCcccceeeccCcC-ccc--cCCC-CCCCCcceEEecCCCCceecccc
Q 037573          220 -RGLPSTNLTAVCVINCEKLEA--LLNGIHR-LTSHQQLTVEQCPG-IVA--IPEN-DYPTNLTILKITDVNIFKSLFQW  291 (357)
Q Consensus       220 -~~~~~~~L~~L~l~~c~~l~~--l~~~~~~-l~~L~~L~l~~c~~-l~~--l~~~-~~~~~L~~L~l~~c~~l~~~~~~  291 (357)
                       ..++  +|++|++++|..++.  +...+.. .++|++|++++|.. +..  +... ..+++|++|++++|..+++....
T Consensus       117 ~~~~~--~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         117 LSSCS--RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             HHHCT--TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             hHHHH--hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh
Confidence             2345  999999999987753  3333333 57899999998743 332  1110 12689999999999988855555


Q ss_pred             cccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccC
Q 037573          292 GLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDF  332 (357)
Q Consensus       292 ~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c  332 (357)
                      .+..+++|++|++++ |+.+..- ...+...|+|++|++++|
T Consensus       195 ~l~~~~~L~~L~L~~-C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFFQLNYLQHLSLSR-CYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGCTTCCEEECTT-CTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhcccCcCCEEECCC-CCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            578899999999999 9988542 122335789999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.5e-12  Score=111.89  Aligned_cols=198  Identities=17%  Similarity=0.215  Sum_probs=149.1

Q ss_pred             CccccccccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc-ccCCCCCccEEEecCCC
Q 037573          135 CLVNLPQALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLSRLQQIEIRNCP  212 (357)
Q Consensus       135 ~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~  212 (357)
                      .++.+|..+  .+++++|++++ .++..+|... ..      +++|+.|+++++ .+..++. .+..++.++.+.+....
T Consensus        22 ~L~~iP~~i--p~~~~~L~Ls~-N~i~~i~~~~f~~------l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          22 GLQAVPVGI--PAASQRIFLHG-NRISHVPAASFRA------CRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CCSSCCTTC--CTTCSEEECTT-SCCCEECTTTTTT------CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CCCccCCCC--CCCCCEEECcC-CcCCCCCHHHhhc------cccccccccccc-ccccccccccccccccccccccccc
Confidence            377788754  25789999999 5788888753 35      889999999985 4555544 34557889999888778


Q ss_pred             CCcccCCCCCC-CCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCC--CCCCcceEEecCCCCceecc
Q 037573          213 SLVSFPERGLP-STNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITDVNIFKSLF  289 (357)
Q Consensus       213 ~l~~l~~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~  289 (357)
                      .+..++...+. +++|++|+++++......+..+...++|+.+++.+ +.++.++...  ..++|++|++++ +.++.++
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~  169 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHG-NRISSVP  169 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCEEC
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhccccc-Ccccccc
Confidence            88887664332 35999999988764333344667789999999988 5788887653  367999999999 6788887


Q ss_pred             cccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEeccc-------------Ccccccccccccccc
Q 037573          290 QWGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRD-------------FQNLEYISSTVLDLH  346 (357)
Q Consensus       290 ~~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~-------------c~~L~~l~~~~~~~~  346 (357)
                      +..+..+++|+.+++.+  +.+..+ |..+..+++|++|++++             ++.|+.+...+.++.
T Consensus       170 ~~~f~~l~~L~~l~l~~--N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQ--NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhccccccchhhhhh--ccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            77788999999999998  556555 66666789999999874             556666665565553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.1e-12  Score=110.07  Aligned_cols=165  Identities=19%  Similarity=0.274  Sum_probs=103.2

Q ss_pred             CCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573          121 VLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL  200 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l  200 (357)
                      .+.+|++|+++++. ++.++. +..+++|++|+++++ .+..++... .      +++|+.|++++| .+..+| .+..+
T Consensus        44 ~L~~L~~L~l~~~~-i~~l~~-l~~l~~L~~L~L~~n-~i~~l~~~~-~------l~~L~~L~l~~n-~i~~l~-~l~~l  111 (210)
T d1h6ta2          44 ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLA-N------LKNLGWLFLDEN-KVKDLS-SLKDL  111 (210)
T ss_dssp             HHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSS-CCCCCGGGT-T------CTTCCEEECCSS-CCCCGG-GGTTC
T ss_pred             HhcCccEEECcCCC-CCCchh-HhhCCCCCEEeCCCc-cccCccccc-c------Cccccccccccc-cccccc-ccccc
Confidence            35678888888764 555553 777888888888875 565555432 3      778888888775 466666 46777


Q ss_pred             CCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEe
Q 037573          201 SRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKI  279 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l  279 (357)
                      ++|+.|+++++. +..++. ..++  +++.++++++. +... ..+..+++|++++++++ .+..++....+++|++|++
T Consensus       112 ~~L~~L~l~~~~-~~~~~~l~~l~--~l~~l~~~~n~-l~~~-~~~~~l~~L~~l~l~~n-~l~~i~~l~~l~~L~~L~L  185 (210)
T d1h6ta2         112 KKLKSLSLEHNG-ISDINGLVHLP--QLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYL  185 (210)
T ss_dssp             TTCCEEECTTSC-CCCCGGGGGCT--TCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred             cccccccccccc-ccccccccccc--ccccccccccc-cccc-ccccccccccccccccc-cccccccccCCCCCCEEEC
Confidence            888888877653 233332 2233  67777776543 4443 24556677777777664 4555543334566777777


Q ss_pred             cCCCCceecccccccccCCccEEEEec
Q 037573          280 TDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      ++ +.++.++  .+..+++|++|+|++
T Consensus       186 s~-N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         186 SK-NHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CS-SCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             CC-CCCCCCh--hhcCCCCCCEEEccC
Confidence            66 4566554  256666777776653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.8e-12  Score=107.69  Aligned_cols=162  Identities=20%  Similarity=0.246  Sum_probs=91.4

Q ss_pred             CCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573          121 VLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL  200 (357)
Q Consensus       121 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l  200 (357)
                      .+.++++|+++++. +..++. ++.+++|++|+++++ .+..+++ +..      +++|+.|+++++. +..++ .+..+
T Consensus        38 ~l~~l~~L~l~~~~-i~~l~~-l~~l~nL~~L~Ls~N-~l~~~~~-l~~------l~~L~~L~l~~n~-~~~~~-~l~~l  105 (199)
T d2omxa2          38 DLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKN------LTKLVDILMNNNQ-IADIT-PLANL  105 (199)
T ss_dssp             HHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTT------CTTCCEEECCSSC-CCCCG-GGTTC
T ss_pred             HhcCCCEEECCCCC-CCCccc-cccCCCcCcCccccc-cccCccc-ccC------Ccccccccccccc-ccccc-ccccc
Confidence            45777788887764 455543 667777777777775 4555543 223      6777777777653 44444 36667


Q ss_pred             CCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEec
Q 037573          201 SRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKIT  280 (357)
Q Consensus       201 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~  280 (357)
                      ++|+.|+++++.....-+...++  +|+.|+++++. +..++ .+..+++|++|++.++ .++.++..+.+++|++|+++
T Consensus       106 ~~L~~L~l~~~~~~~~~~~~~l~--~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls  180 (199)
T d2omxa2         106 TNLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSN-QVTDLKPLANLTTLERLDIS  180 (199)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCT--TCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECC
T ss_pred             cccccccccccccccccccchhh--hhHHhhhhhhh-hcccc-cccccccccccccccc-cccCCccccCCCCCCEEECC
Confidence            77777777665433222223333  66666666543 44442 3555666666666553 44444433334566666666


Q ss_pred             CCCCceecccccccccCCccEE
Q 037573          281 DVNIFKSLFQWGLHRLNSLKEL  302 (357)
Q Consensus       281 ~c~~l~~~~~~~l~~l~~L~~L  302 (357)
                      + +.+++++.  +..+++|++|
T Consensus       181 ~-N~i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         181 S-NKVSDISV--LAKLTNLESL  199 (199)
T ss_dssp             S-SCCCCCGG--GGGCTTCSEE
T ss_pred             C-CCCCCCcc--ccCCCCCCcC
Confidence            5 34554432  3455555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-11  Score=105.60  Aligned_cols=202  Identities=18%  Similarity=0.216  Sum_probs=142.8

Q ss_pred             CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCcccc-cccCC
Q 037573          123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLP-HELHK  199 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~  199 (357)
                      +++++|+++++. ++.+|. .+..+++|++|+++++.....++...+ .      +++++.+.+..+..+..++ ..+..
T Consensus        29 ~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~------l~~l~~l~~~~~n~l~~~~~~~~~~  101 (242)
T d1xwdc1          29 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN------LPKLHEIRIEKANNLLYINPEAFQN  101 (242)
T ss_dssp             SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEES------CTTCCEEEEECCTTCCEECTTSEEC
T ss_pred             CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccc------ccccccccccccccccccccccccc
Confidence            589999999875 778876 578899999999998765555554432 4      7899999998877776665 44678


Q ss_pred             CCCccEEEecCCCCCcccCC-CCCCCCCcceEEe--ccCCcchhhHh-hhccC-CcccceeeccCcCccccCCCCC-CCC
Q 037573          200 LSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCV--INCEKLEALLN-GIHRL-TSHQQLTVEQCPGIVAIPENDY-PTN  273 (357)
Q Consensus       200 l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l--~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~-~~~  273 (357)
                      +++|+.++++++ .+...+. ....  +++.+..  .++..+..++. .+..+ ..++.|++.+ +.++.++...+ ..+
T Consensus       102 l~~L~~l~l~~~-~l~~~~~~~~~~--~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~~~  177 (242)
T d1xwdc1         102 LPNLQYLLISNT-GIKHLPDVHKIH--SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFNGTQ  177 (242)
T ss_dssp             CTTCCEEEEESC-CCCSCCCCTTTC--BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTTTCC
T ss_pred             cccccccccchh-hhcccccccccc--cccccccccccccccccccccccccccccceeeeccc-ccccccccccccchh
Confidence            999999999985 5655554 2222  4444432  23344555542 33444 3678888876 57777776533 567


Q ss_pred             cceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573          274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      +.++....++.++.++.+.+..+++|+.|++++  +.++.+|...  +.++.+|..-++.+|+.++
T Consensus       178 l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~--N~l~~l~~~~--~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         178 LDELNLSDNNNLEELPNDVFHGASGPVILDISR--TRIHSLPSYG--LENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT--SCCCCCCSSS--CTTCCEEESSSEESSSCSC
T ss_pred             hhccccccccccccccHHHhcCCCCCCEEECCC--CcCCccCHHH--HcCCcccccCcCCCCCcCC
Confidence            777776666889989887788999999999998  6799998643  4555555555555666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=4.3e-12  Score=106.30  Aligned_cols=165  Identities=18%  Similarity=0.259  Sum_probs=126.5

Q ss_pred             CCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC-CCCC
Q 037573          145 CLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE-RGLP  223 (357)
Q Consensus       145 ~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~  223 (357)
                      .+.+|++|+++++ .+..++. +..      +++|++|+++++ .+..++. ++.+++|+.|+++++ .++.++. ..++
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~~-l~~------l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~~l~~l~  112 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQG-IQY------LPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLK  112 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCTT-GGG------CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCT
T ss_pred             HhcCccEEECcCC-CCCCchh-Hhh------CCCCCEEeCCCc-cccCccc-cccCccccccccccc-cccccccccccc
Confidence            4678999999985 5555543 223      899999999996 5777764 788999999999985 6777764 4445


Q ss_pred             CCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEEE
Q 037573          224 STNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI  303 (357)
Q Consensus       224 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~  303 (357)
                        +|+.|+++++. +..+ ..+.++++|+.++++++ .+...+....+++|+.+++++ +.++.+++  +..+++|++|+
T Consensus       113 --~L~~L~l~~~~-~~~~-~~l~~l~~l~~l~~~~n-~l~~~~~~~~l~~L~~l~l~~-n~l~~i~~--l~~l~~L~~L~  184 (210)
T d1h6ta2         113 --KLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLY  184 (210)
T ss_dssp             --TCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEE
T ss_pred             --ccccccccccc-cccc-ccccccccccccccccc-ccccccccccccccccccccc-cccccccc--ccCCCCCCEEE
Confidence              99999998876 3444 36788899999999874 566655545578999999999 56776653  68899999999


Q ss_pred             EeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573          304 VNGEFPDMISFPQEEIGSTSLTRLWIRD  331 (357)
Q Consensus       304 l~~~c~~l~~l~~~~~~~~sL~~L~l~~  331 (357)
                      +++  +.++.++. +..+++|++|++++
T Consensus       185 Ls~--N~i~~l~~-l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSK--NHISDLRA-LAGLKNLDVLELFS  209 (210)
T ss_dssp             CCS--SCCCBCGG-GTTCTTCSEEEEEE
T ss_pred             CCC--CCCCCChh-hcCCCCCCEEEccC
Confidence            998  57888874 44677888888753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=1.5e-11  Score=104.20  Aligned_cols=170  Identities=21%  Similarity=0.233  Sum_probs=127.6

Q ss_pred             ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc
Q 037573          117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~  196 (357)
                      +.++.+++|++|+++++. +..++. +..+++|++++++++ .++.++... .      +++|+.+.++++.. ..+ ..
T Consensus        57 ~~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n-~~~~i~~l~-~------l~~L~~l~l~~~~~-~~~-~~  124 (227)
T d1h6ua2          57 EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLKNVSAIA-G------LQSIKTLDLTSTQI-TDV-TP  124 (227)
T ss_dssp             TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCSCCGGGT-T------CTTCCEEECTTSCC-CCC-GG
T ss_pred             hhHhcCCCCcEeecCCce-eecccc-ccccccccccccccc-ccccccccc-c------cccccccccccccc-ccc-ch
Confidence            346789999999999985 566554 889999999999986 455554322 3      89999999988753 333 33


Q ss_pred             cCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcce
Q 037573          197 LHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTI  276 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~  276 (357)
                      +...+.++.+.++++......+....  ++|++|++.++. +...+ .+.++++|++|+++++ .++.++....+++|++
T Consensus       125 ~~~~~~~~~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~  199 (227)
T d1h6ua2         125 LAGLSNLQVLYLDLNQITNISPLAGL--TNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDN-KISDISPLASLPNLIE  199 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGC--TTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCE
T ss_pred             hccccchhhhhchhhhhchhhhhccc--cccccccccccc-cccch-hhcccccceecccCCC-ccCCChhhcCCCCCCE
Confidence            66678899999887543332222333  489999998865 44443 4788999999999986 7888776555789999


Q ss_pred             EEecCCCCceecccccccccCCccEEEEec
Q 037573          277 LKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       277 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      |++++| .++.+++  +..+++|+.|++++
T Consensus       200 L~Ls~N-~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         200 VHLKNN-QISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             EECTTS-CCCBCGG--GTTCTTCCEEEEEE
T ss_pred             EECcCC-cCCCCcc--cccCCCCCEEEeeC
Confidence            999995 7888764  68999999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=8.4e-12  Score=103.58  Aligned_cols=151  Identities=19%  Similarity=0.250  Sum_probs=113.7

Q ss_pred             CCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC-CCC
Q 037573          144 HCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE-RGL  222 (357)
Q Consensus       144 ~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~  222 (357)
                      ..++++++|+++++ .+..+.. +..      +++|++|++++| .+..++. ++++++|+.|+++++ .+..++. ..+
T Consensus        37 ~~l~~l~~L~l~~~-~i~~l~~-l~~------l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~l~~l  105 (199)
T d2omxa2          37 TDLDQVTTLQADRL-GIKSIDG-VEY------LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITPLANL  105 (199)
T ss_dssp             HHHTTCCEEECTTS-CCCCCTT-GGG------CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTC
T ss_pred             HHhcCCCEEECCCC-CCCCccc-ccc------CCCcCcCccccc-cccCccc-ccCCccccccccccc-ccccccccccc
Confidence            35778999999985 4555542 223      899999999996 5777764 889999999999986 4455543 445


Q ss_pred             CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEE
Q 037573          223 PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKEL  302 (357)
Q Consensus       223 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L  302 (357)
                      +  +|+.|+++++.. ..+ ..+.++++|+.|+++++ .+..++....+++|+.|++.+ +.++.+++  +..+++|++|
T Consensus       106 ~--~L~~L~l~~~~~-~~~-~~~~~l~~L~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~-n~l~~l~~--l~~l~~L~~L  177 (199)
T d2omxa2         106 T--NLTGLTLFNNQI-TDI-DPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLNFSS-NQVTDLKP--LANLTTLERL  177 (199)
T ss_dssp             T--TCSEEECCSSCC-CCC-GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCCEE
T ss_pred             c--cccccccccccc-ccc-cccchhhhhHHhhhhhh-hhccccccccccccccccccc-ccccCCcc--ccCCCCCCEE
Confidence            5  999999987664 333 35778999999999885 566665445578999999998 56776653  6889999999


Q ss_pred             EEeccCCCCCcCC
Q 037573          303 IVNGEFPDMISFP  315 (357)
Q Consensus       303 ~l~~~c~~l~~l~  315 (357)
                      ++++ | .+..++
T Consensus       178 ~ls~-N-~i~~i~  188 (199)
T d2omxa2         178 DISS-N-KVSDIS  188 (199)
T ss_dssp             ECCS-S-CCCCCG
T ss_pred             ECCC-C-CCCCCc
Confidence            9998 5 677765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.26  E-value=8.4e-11  Score=105.33  Aligned_cols=58  Identities=21%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573          271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS  339 (357)
Q Consensus       271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~  339 (357)
                      +++|++|++++ +.++.++.    .+++|+.|++++  ++++++|.   .+++|++|++++++ |+.++
T Consensus       283 ~~~L~~L~Ls~-N~l~~lp~----~~~~L~~L~L~~--N~L~~l~~---~~~~L~~L~L~~N~-L~~lp  340 (353)
T d1jl5a_         283 PPSLEELNVSN-NKLIELPA----LPPRLERLIASF--NHLAEVPE---LPQNLKQLHVEYNP-LREFP  340 (353)
T ss_dssp             CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCS--SCCSCCCC---CCTTCCEEECCSSC-CSSCC
T ss_pred             CCCCCEEECCC-CccCcccc----ccCCCCEEECCC--CcCCcccc---ccCCCCEEECcCCc-CCCCC
Confidence            47899999999 56777653    468999999987  68999987   57899999999986 88886

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.7e-11  Score=100.83  Aligned_cols=183  Identities=17%  Similarity=0.287  Sum_probs=128.9

Q ss_pred             ccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCcccccc
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPHE  196 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~~  196 (357)
                      |..+++|++|+++++.....++. .+..++.++++.+..+..+..++... ..      +++|+.+++.++ .+...+. 
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~------l~~L~~l~l~~~-~l~~~~~-  120 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN------LPNLQYLLISNT-GIKHLPD-  120 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEEC------CTTCCEEEEESC-CCCSCCC-
T ss_pred             hhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccc------cccccccccchh-hhccccc-
Confidence            67789999999999876665544 57789999999998887777666543 24      889999999986 4555543 


Q ss_pred             cCCCCCccEEE--ecCCCCCcccCCCCCC--CCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCC--C
Q 037573          197 LHKLSRLQQIE--IRNCPSLVSFPERGLP--STNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEND--Y  270 (357)
Q Consensus       197 l~~l~~L~~L~--l~~c~~l~~l~~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~  270 (357)
                      ...+.+++.+.  ..+...+..++...+.  ...++.|++.+ +.++.++......++++.+...+++.++.+|...  .
T Consensus       121 ~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~  199 (242)
T d1xwdc1         121 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG  199 (242)
T ss_dssp             CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTT
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeccc-ccccccccccccchhhhccccccccccccccHHHhcC
Confidence            33444444443  2334566666654332  13678888866 5577777666667777777766667899888753  3


Q ss_pred             CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCC
Q 037573          271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFP  315 (357)
Q Consensus       271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~  315 (357)
                      +++|+.|++++ +.++.++.+++..+++|+.+++.+    ++.+|
T Consensus       200 l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l~~~~----l~~lp  239 (242)
T d1xwdc1         200 ASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYN----LKKLP  239 (242)
T ss_dssp             SCCCSEEECTT-SCCCCCCSSSCTTCCEEESSSEES----SSCSC
T ss_pred             CCCCCEEECCC-CcCCccCHHHHcCCcccccCcCCC----CCcCC
Confidence            68999999999 778888877666666666655544    55555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.93  E-value=9.1e-09  Score=91.65  Aligned_cols=94  Identities=28%  Similarity=0.333  Sum_probs=72.1

Q ss_pred             CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573          123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR  202 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  202 (357)
                      .++++|+++++. ++.+|+   ..++|++|++++ ..+..+|..         +.+|+.|++.++ .+..++. +  .++
T Consensus        38 ~~l~~LdLs~~~-L~~lp~---~~~~L~~L~Ls~-N~l~~lp~~---------~~~L~~L~l~~n-~l~~l~~-l--p~~   99 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSLPE---LPPHLESLVASC-NSLTELPEL---------PQSLKSLLVDNN-NLKALSD-L--PPL   99 (353)
T ss_dssp             HTCSEEECTTSC-CSCCCS---CCTTCSEEECCS-SCCSSCCCC---------CTTCCEEECCSS-CCSCCCS-C--CTT
T ss_pred             cCCCEEEeCCCC-CCCCCC---CCCCCCEEECCC-CCCcccccc---------hhhhhhhhhhhc-ccchhhh-h--ccc
Confidence            478999999975 788996   367899999986 688888865         568999999885 4566553 1  246


Q ss_pred             ccEEEecCCCCCcccCCCCCCCCCcceEEeccCC
Q 037573          203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCE  236 (357)
Q Consensus       203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  236 (357)
                      |++|+++++ .+..+|.. ..+++|++|+++++.
T Consensus       100 L~~L~L~~n-~l~~lp~~-~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         100 LEYLGVSNN-QLEKLPEL-QNSSFLKIIDVDNNS  131 (353)
T ss_dssp             CCEEECCSS-CCSSCCCC-TTCTTCCEEECCSSC
T ss_pred             ccccccccc-ccccccch-hhhccceeecccccc
Confidence            999999985 67888763 234599999998764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1e-09  Score=87.45  Aligned_cols=124  Identities=16%  Similarity=0.235  Sum_probs=75.1

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc-
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL-  197 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l-  197 (357)
                      +.+..++++|+++++. +..++.....+++|+.|+++++ .+..++. +..      +++|+.|++++|. +..+|.++ 
T Consensus        14 ~~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~-~~~------l~~L~~L~ls~N~-i~~l~~~~~   83 (162)
T d1a9na_          14 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN-EIRKLDG-FPL------LRRLKTLLVNNNR-ICRIGEGLD   83 (162)
T ss_dssp             EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSS-CCCEECC-CCC------CSSCCEEECCSSC-CCEECSCHH
T ss_pred             ccCcCcCcEEECCCCC-CCccCccccccccCCEEECCCC-CCCccCC-ccc------Ccchhhhhccccc-ccCCCcccc
Confidence            4556677888888764 5666654556777888888774 5666543 223      6777777777753 66665543 


Q ss_pred             CCCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchhhHh----hhccCCcccceee
Q 037573          198 HKLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEALLN----GIHRLTSHQQLTV  256 (357)
Q Consensus       198 ~~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l  256 (357)
                      ..+++|+.|+++++ .+..++.    ..++  +|++|++++|+ +...|.    .+..+++|++|+.
T Consensus        84 ~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~--~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          84 QALPDLTELILTNN-SLVELGDLDPLASLK--SLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHCTTCCEEECCSC-CCCCGGGGGGGGGCT--TCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccccceeccc-ccccccccccccccc--ccchhhcCCCc-cccccchHHHHHHHCCCcCeeCC
Confidence            34777777777764 4444332    2233  67777776654 333332    3455666666653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=1.6e-09  Score=82.25  Aligned_cols=74  Identities=18%  Similarity=0.231  Sum_probs=35.0

Q ss_pred             cEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc
Q 037573          180 ENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ  258 (357)
Q Consensus       180 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  258 (357)
                      |.|+++++ .+..++ .+.++++|++|++++ ..++.+|.....+++|++|++++ +.++.+| ++..+++|++|++++
T Consensus         1 R~L~Ls~n-~l~~l~-~l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHK-DLTVLC-HLEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTS-CCSSCC-CGGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCC-CCCCCc-ccccCCCCCEEECCC-CccCcchhhhhhhhccccccccc-ccccccC-ccccccccCeEECCC
Confidence            34555553 344444 255555555555554 34445543211223555555554 2344443 344555555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=7.8e-09  Score=84.62  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=86.0

Q ss_pred             ccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcc-cCCCCC-CCCCcceEEeccCCcchhhHhhhccCCcccceee
Q 037573          179 FENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVS-FPERGL-PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTV  256 (357)
Q Consensus       179 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l  256 (357)
                      .+.++.++ ..+..+|.++.  +++++|++++. .+.. ++...+ .+++|++|+++++.-....+..+..+++|++|++
T Consensus        10 ~~~v~Cs~-~~L~~iP~~lp--~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTG-RGLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTT-SCCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeC-CCcCccCCCCC--CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            45566555 45778887763  67888888874 5543 333322 2348888888775544444556777888888888


Q ss_pred             ccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573          257 EQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       257 ~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      ++ ++++.++...+  +++|++|++++ +.++.+++..+..+++|++|++.+
T Consensus        86 s~-N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          86 GE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cc-ccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccc
Confidence            87 57877776533  67888888888 778888777777888888888887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=8.2e-09  Score=78.23  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=40.5

Q ss_pred             cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccE
Q 037573          126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQ  205 (357)
Q Consensus       126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  205 (357)
                      |.|+++++. ++.++. ++.+++|++|++++ ..+..+|..+..      +++|+.|+++++ .+..+| ++..+++|+.
T Consensus         1 R~L~Ls~n~-l~~l~~-l~~l~~L~~L~ls~-N~l~~lp~~~~~------l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~   69 (124)
T d1dcea3           1 RVLHLAHKD-LTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAA------LRCLEVLQASDN-ALENVD-GVANLPRLQE   69 (124)
T ss_dssp             SEEECTTSC-CSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGG------CTTCCEEECCSS-CCCCCG-GGTTCSSCCE
T ss_pred             CEEEcCCCC-CCCCcc-cccCCCCCEEECCC-CccCcchhhhhh------hhcccccccccc-cccccC-ccccccccCe
Confidence            345665543 455543 55666666666665 345555544444      566666666653 345554 3555555666


Q ss_pred             EEecC
Q 037573          206 IEIRN  210 (357)
Q Consensus       206 L~l~~  210 (357)
                      |++++
T Consensus        70 L~l~~   74 (124)
T d1dcea3          70 LLLCN   74 (124)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            65554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=7.7e-09  Score=84.68  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=92.4

Q ss_pred             cCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCc-cc-ccccCCCCCccEEEecCCCCCcccCCCCC-CCC
Q 037573          149 LTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLK-CL-PHELHKLSRLQQIEIRNCPSLVSFPERGL-PST  225 (357)
Q Consensus       149 L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~-~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~  225 (357)
                      .+.++-++ ..+.++|..+        .+++++|+++++. +. .+ +..+..+++|+.|+++++ .+..++.+.+ ..+
T Consensus        10 ~~~v~Cs~-~~L~~iP~~l--------p~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~   78 (192)
T d1w8aa_          10 GTTVDCTG-RGLKEIPRDI--------PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGAS   78 (192)
T ss_dssp             TTEEECTT-SCCSSCCSCC--------CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCT
T ss_pred             CCEEEEeC-CCcCccCCCC--------CCCCCEEEeCCCC-CcccccccccCCCceEeeeecccc-cccccccccccccc
Confidence            34566666 5678888764        5689999999964 54 34 344677999999999974 5555554322 245


Q ss_pred             CcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCce
Q 037573          226 NLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFK  286 (357)
Q Consensus       226 ~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~  286 (357)
                      +|++|+++++ .++.++. .+.++++|++|++++ +.++.++.+.+  .++|++|++++ +.+.
T Consensus        79 ~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~-N~~~  139 (192)
T d1w8aa_          79 HIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS-NPFN  139 (192)
T ss_dssp             TCCEEECCSC-CCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT-CCBC
T ss_pred             ccceeeeccc-cccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccc-cccc
Confidence            9999999885 5777754 578899999999998 57888887643  78999999998 6555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.8e-09  Score=83.49  Aligned_cols=113  Identities=20%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             cCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCc
Q 037573          197 LHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNL  274 (357)
Q Consensus       197 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L  274 (357)
                      +.+..++++|+++++ .+..++.....+++|++|+++++ .++.+ +++..+++|++|++++| .++.++..  ..+++|
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l-~~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCcc-CCcccCcchhhhhcccc-cccCCCcccccccccc
Confidence            456678999999984 67777652223358999999985 57777 46888999999999995 68888765  237899


Q ss_pred             ceEEecCCCCceeccc-ccccccCCccEEEEeccCCCCCcCCC
Q 037573          275 TILKITDVNIFKSLFQ-WGLHRLNSLKELIVNGEFPDMISFPQ  316 (357)
Q Consensus       275 ~~L~l~~c~~l~~~~~-~~l~~l~~L~~L~l~~~c~~l~~l~~  316 (357)
                      ++|++++ +.++.++. ..+..+++|++|++.+ | .+...|.
T Consensus        90 ~~L~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~-N-~i~~~~~  129 (162)
T d1a9na_          90 TELILTN-NSLVELGDLDPLASLKSLTYLCILR-N-PVTNKKH  129 (162)
T ss_dssp             CEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS-S-GGGGSTT
T ss_pred             ccceecc-ccccccccccccccccccchhhcCC-C-ccccccc
Confidence            9999999 66776543 3467889999999998 4 5555553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.70  E-value=2e-11  Score=101.11  Aligned_cols=76  Identities=12%  Similarity=0.245  Sum_probs=33.4

Q ss_pred             cccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhhhccCCcccc
Q 037573          176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQ  253 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  253 (357)
                      +++|++|+++++ .++.++ ++..+++|+.|+++++ .++.++.  ...+  +|++|+++++ .++.++ .+..+++|++
T Consensus        47 L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~--~L~~L~l~~N-~i~~l~-~~~~l~~L~~  119 (198)
T d1m9la_          47 LKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVAD--TLEELWISYN-QIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             TTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHH--HCCEEECSEE-ECCCHH-HHHHHHHSSE
T ss_pred             ccccceeECccc-CCCCcc-cccCCccccChhhccc-ccccccccccccc--cccccccccc-cccccc-cccccccccc
Confidence            555555555553 244443 3444555555555543 3333332  1111  4455555442 233332 2344444444


Q ss_pred             eeecc
Q 037573          254 LTVEQ  258 (357)
Q Consensus       254 L~l~~  258 (357)
                      |++++
T Consensus       120 L~L~~  124 (198)
T d1m9la_         120 LYMSN  124 (198)
T ss_dssp             EEESE
T ss_pred             ccccc
Confidence            44444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1e-07  Score=74.99  Aligned_cols=88  Identities=16%  Similarity=0.121  Sum_probs=46.7

Q ss_pred             hhHhhhccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC
Q 037573          240 ALLNGIHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE  317 (357)
Q Consensus       240 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~  317 (357)
                      ..|..+..+++|++|++.+.+.++.++...+  +++|+.|++++ +.++.+++.++..+++|++|+|++  ++++.+|.+
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~--N~l~~l~~~   98 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF--NALESLSWK   98 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS--SCCSCCCST
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccccccccceeccC--CCCcccChh
Confidence            3344444555555555554444555443321  45566666655 455555554455566666666665  556666555


Q ss_pred             CCCCCCcceEecc
Q 037573          318 EIGSTSLTRLWIR  330 (357)
Q Consensus       318 ~~~~~sL~~L~l~  330 (357)
                      .+...+|++|+++
T Consensus        99 ~~~~~~l~~L~L~  111 (156)
T d2ifga3          99 TVQGLSLQELVLS  111 (156)
T ss_dssp             TTCSCCCCEEECC
T ss_pred             hhccccccccccC
Confidence            5444455555555

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.50  E-value=1.3e-09  Score=89.93  Aligned_cols=104  Identities=16%  Similarity=0.257  Sum_probs=59.3

Q ss_pred             ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573          119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH  198 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~  198 (357)
                      +..+++|++|+++++. +..++. +..+++|++|+++++ .+..++.....      +++|+.|+++++ .+..++ .+.
T Consensus        44 l~~L~~L~~L~Ls~n~-I~~i~~-l~~l~~L~~L~Ls~N-~i~~i~~~~~~------~~~L~~L~l~~N-~i~~l~-~~~  112 (198)
T d1m9la_          44 LSTLKACKHLALSTNN-IEKISS-LSGMENLRILSLGRN-LIKKIENLDAV------ADTLEELWISYN-QIASLS-GIE  112 (198)
T ss_dssp             HHHTTTCCEEECSEEE-ESCCCC-HHHHTTCCEEECCEE-EECSCSSHHHH------HHHCCEEECSEE-ECCCHH-HHH
T ss_pred             HhcccccceeECcccC-CCCccc-ccCCccccChhhccc-ccccccccccc------cccccccccccc-cccccc-ccc
Confidence            4556677777776654 555543 666677777777664 45555543222      456777777664 355543 355


Q ss_pred             CCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCC
Q 037573          199 KLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCE  236 (357)
Q Consensus       199 ~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~  236 (357)
                      .+++|+.|+++++ .+..++.    ..++  +|++|++++++
T Consensus       113 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~--~L~~L~L~~N~  151 (198)
T d1m9la_         113 KLVNLRVLYMSNN-KITNWGEIDKLAALD--KLEDLLLAGNP  151 (198)
T ss_dssp             HHHHSSEEEESEE-ECCCHHHHHHHTTTT--TCSEEEECSSH
T ss_pred             ccccccccccccc-hhccccccccccCCC--ccceeecCCCc
Confidence            5666777766653 3333321    3344  66666666643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=8.7e-07  Score=69.51  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=71.8

Q ss_pred             cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCcccc-cccCCCCCc
Q 037573          126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLP-HELHKLSRL  203 (357)
Q Consensus       126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L  203 (357)
                      ..+...+. ....+|..+..+++|++|.+.+.+.++.++...+ .      +++|+.|+++++ .+..++ ..+..+++|
T Consensus        11 ~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~------l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3          11 SGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRG------LGELRNLTIVKS-GLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             SCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCS------CCCCSEEECCSS-CCCEECTTGGGSCSCC
T ss_pred             CeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhcc------ccccCcceeecc-ccCCcccccccccccc
Confidence            34555543 3455666677788888888877566777765432 4      788888888875 577774 446778888


Q ss_pred             cEEEecCCCCCcccCCCCCCCCCcceEEeccCC
Q 037573          204 QQIEIRNCPSLVSFPERGLPSTNLTAVCVINCE  236 (357)
Q Consensus       204 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  236 (357)
                      +.|++++ ..++.++.+.+...+|++|++++++
T Consensus        83 ~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          83 SRLNLSF-NALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CEEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             cceeccC-CCCcccChhhhccccccccccCCCc
Confidence            8888887 5777888766655578888887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.77  E-value=9e-06  Score=71.95  Aligned_cols=182  Identities=14%  Similarity=0.116  Sum_probs=107.1

Q ss_pred             ccCCCcccEEeeccCcCcc----ccccccCCCCCcCEEeecCCCcchhcc-ccc-cccccc------cccccccEEEeeC
Q 037573          119 IQVLCRLKYLELIDCECLV----NLPQALHCLSSLTEITVAGCTKLVSFL-ELS-SVAEMF------AIITSFENIMVNG  186 (357)
Q Consensus       119 ~~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~i~~c~~l~~~~-~~~-~~L~~L------~~l~~L~~L~l~~  186 (357)
                      +..+++|+.|++++|..-.    .+...+...++|+.|++++|. +.... ... ..+..+      ...+.|+.+++++
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeeccc
Confidence            4556889999998875322    244445567889999998864 32110 000 001111      0156788888877


Q ss_pred             CCC----CcccccccCCCCCccEEEecCCCCCcc------cCCCCCCCCCcceEEeccCCcch-----hhHhhhccCCcc
Q 037573          187 CDN----LKCLPHELHKLSRLQQIEIRNCPSLVS------FPERGLPSTNLTAVCVINCEKLE-----ALLNGIHRLTSH  251 (357)
Q Consensus       187 c~~----l~~lp~~l~~l~~L~~L~l~~c~~l~~------l~~~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L  251 (357)
                      +.-    +..+...+...+.|+.|++++|. +..      +....-..++|++|+++++. ++     .+...+..+++|
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNL  245 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTC
T ss_pred             ccccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccc
Confidence            431    12334445567889999998863 321      11111223489999998765 32     344567788899


Q ss_pred             cceeeccCcCccc-----cCC---CCCCCCcceEEecCCCCcee-----cccccc-cccCCccEEEEec
Q 037573          252 QQLTVEQCPGIVA-----IPE---NDYPTNLTILKITDVNIFKS-----LFQWGL-HRLNSLKELIVNG  306 (357)
Q Consensus       252 ~~L~l~~c~~l~~-----l~~---~~~~~~L~~L~l~~c~~l~~-----~~~~~l-~~l~~L~~L~l~~  306 (357)
                      ++|++++|. +..     +..   ......|++|++++ +.++.     +.. .+ ...++|++|++++
T Consensus       246 ~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~-N~i~~~~~~~l~~-~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         246 RELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQY-NEIELDAVRTLKT-VIDEKMPDLLFLELNG  311 (344)
T ss_dssp             CEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCS-SCCBHHHHHHHHH-HHHHHCTTCCEEECTT
T ss_pred             hhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCC-CcCChHHHHHHHH-HHHccCCCCCEEECCC
Confidence            999998874 432     100   01135788999988 55652     211 13 2467888888887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.64  E-value=1.3e-05  Score=70.88  Aligned_cols=14  Identities=7%  Similarity=0.055  Sum_probs=6.8

Q ss_pred             cCCCCCcCEEeecC
Q 037573          143 LHCLSSLTEITVAG  156 (357)
Q Consensus       143 ~~~l~~L~~L~i~~  156 (357)
                      +...++|+.+.+++
T Consensus        55 l~~~~~L~~l~l~~   68 (344)
T d2ca6a1          55 IASKKDLEIAEFSD   68 (344)
T ss_dssp             TTTCTTCCEEECCS
T ss_pred             HHhCCCCCEEECCC
Confidence            44445555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00031  Score=54.72  Aligned_cols=61  Identities=20%  Similarity=0.214  Sum_probs=41.7

Q ss_pred             hhccCCcccceeeccCcCccccCCC----CCCCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573          244 GIHRLTSHQQLTVEQCPGIVAIPEN----DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG  306 (357)
Q Consensus       244 ~~~~l~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~  306 (357)
                      ....++.|++|++++ +.++.++..    ..+++|+.|++++ |.++++++.......+|+.|++.+
T Consensus        60 ~~~~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~  124 (162)
T d1koha1          60 IEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDG  124 (162)
T ss_dssp             HHHHCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTT
T ss_pred             HHHhCCCCCEeeCCC-ccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCC
Confidence            345688888888888 466665432    2267888899988 777766553223345688888887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.00012  Score=57.11  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=39.8

Q ss_pred             cccccEEEeeCCCCCccc---ccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchh-------hHhh
Q 037573          176 ITSFENIMVNGCDNLKCL---PHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEA-------LLNG  244 (357)
Q Consensus       176 l~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~-------l~~~  244 (357)
                      +++|+.|+++++ .+..+   +..+..+++|+.|++++ ..+++++. ..+...+|+.|++.+++-...       ....
T Consensus        64 ~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          64 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             CTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             CCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            666777777764 34433   23344566677777766 35555443 111112566666666442211       1122


Q ss_pred             hccCCccccee
Q 037573          245 IHRLTSHQQLT  255 (357)
Q Consensus       245 ~~~l~~L~~L~  255 (357)
                      +..+|+|++||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            44566666664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0031  Score=56.53  Aligned_cols=104  Identities=15%  Similarity=0.253  Sum_probs=64.1

Q ss_pred             CcccEEeeccCcCccc--cccccCCCCCcCEEeecCCCcch-----hccccccccccccccccccEEEeeCCCCCc----
Q 037573          123 CRLKYLELIDCECLVN--LPQALHCLSSLTEITVAGCTKLV-----SFLELSSVAEMFAIITSFENIMVNGCDNLK----  191 (357)
Q Consensus       123 ~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~i~~c~~l~-----~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~----  191 (357)
                      .+|+.|++++.. +..  +..-+..+++++.|++.+|. +.     .+......      .++|+.|+++++. +.    
T Consensus         2 ~~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~------~~~L~~LdLs~N~-i~~~~~   72 (460)
T d1z7xw1           2 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRV------NPALAELNLRSNE-LGDVGV   72 (460)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHT------CTTCCEEECTTCC-CHHHHH
T ss_pred             CCCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhc------CCCCCEEECcCCc-CChHHH
Confidence            468899997654 443  23334567889999999984 43     22222122      7899999998864 43    


Q ss_pred             -ccccccCC-CCCccEEEecCCCCCcccC-----CCCCCCCCcceEEeccCC
Q 037573          192 -CLPHELHK-LSRLQQIEIRNCPSLVSFP-----ERGLPSTNLTAVCVINCE  236 (357)
Q Consensus       192 -~lp~~l~~-l~~L~~L~l~~c~~l~~l~-----~~~~~~~~L~~L~l~~c~  236 (357)
                       .+...+.. .++|++|++++|. ++...     ...-..++|++|+++++.
T Consensus        73 ~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          73 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence             23333332 3579999999874 54321     111122489999998865

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0034  Score=56.27  Aligned_cols=103  Identities=19%  Similarity=0.328  Sum_probs=59.1

Q ss_pred             ccccEEEeeCCCCCccc--ccccCCCCCccEEEecCCCCCccc-----CC--CCCCCCCcceEEeccCCcchh-----hH
Q 037573          177 TSFENIMVNGCDNLKCL--PHELHKLSRLQQIEIRNCPSLVSF-----PE--RGLPSTNLTAVCVINCEKLEA-----LL  242 (357)
Q Consensus       177 ~~L~~L~l~~c~~l~~l--p~~l~~l~~L~~L~l~~c~~l~~l-----~~--~~~~~~~L~~L~l~~c~~l~~-----l~  242 (357)
                      ++|+.|+|++ ..+...  ..-+..+++++.|++++|. +...     ..  ...+  +|++|+++++. ++.     +.
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~--~L~~LdLs~N~-i~~~~~~~l~   76 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNP--ALAELNLRSNE-LGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCT--TCCEEECTTCC-CHHHHHHHHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCC--CCCEEECcCCc-CChHHHHHHH
Confidence            4688899976 445432  2223446788888898873 4321     11  2334  88888887754 442     22


Q ss_pred             hhhcc-CCcccceeeccCcCcccc-----CC-CCCCCCcceEEecCCCCce
Q 037573          243 NGIHR-LTSHQQLTVEQCPGIVAI-----PE-NDYPTNLTILKITDVNIFK  286 (357)
Q Consensus       243 ~~~~~-l~~L~~L~l~~c~~l~~l-----~~-~~~~~~L~~L~l~~c~~l~  286 (357)
                      ..+.. ..+|++|++++|. ++..     +. ....++|++|++++ +.+.
T Consensus        77 ~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~-N~i~  125 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSD-NLLG  125 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCS-SBCH
T ss_pred             HHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccc-ccch
Confidence            23322 2468888888763 4421     11 12356788888887 4454

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.68  E-value=0.045  Score=41.96  Aligned_cols=85  Identities=13%  Similarity=0.061  Sum_probs=42.5

Q ss_pred             CCcccEEeeccCcCccc-----cccccCCCCCcCEEeecCCCcchhcc-ccccccccccccccccEEEeeCCCCCcc---
Q 037573          122 LCRLKYLELIDCECLVN-----LPQALHCLSSLTEITVAGCTKLVSFL-ELSSVAEMFAIITSFENIMVNGCDNLKC---  192 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~i~~c~~l~~~~-~~~~~L~~L~~l~~L~~L~l~~c~~l~~---  192 (357)
                      .++|+.|+++++..++.     +...+...+.|++|++++|. +..-. ..+.  +.|...+.|+.|++++|. +..   
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la--~~L~~n~~L~~L~L~~n~-i~~~g~   89 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLI--ELIETSPSLRVLNVESNF-LTPELL   89 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHH--HHHHHCSSCCEEECCSSB-CCHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHh--hhhhhcccccceeeehhh-cchHHH
Confidence            47788888876543333     23346667778888887753 32110 0000  011114567777776653 321   


Q ss_pred             --cccccCCCCCccEEEecC
Q 037573          193 --LPHELHKLSRLQQIEIRN  210 (357)
Q Consensus       193 --lp~~l~~l~~L~~L~l~~  210 (357)
                        +-..+..-++|++|++++
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHhCCcCCEEECCC
Confidence              222333444555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.18  E-value=0.078  Score=40.51  Aligned_cols=11  Identities=27%  Similarity=0.594  Sum_probs=5.6

Q ss_pred             CCccEEEecCC
Q 037573          201 SRLQQIEIRNC  211 (357)
Q Consensus       201 ~~L~~L~l~~c  211 (357)
                      ++|++|+++++
T Consensus        15 ~~L~~L~L~~~   25 (167)
T d1pgva_          15 TDLKEVNINNM   25 (167)
T ss_dssp             SSCCEEECTTC
T ss_pred             CCCcEEEeCCC
Confidence            44555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.63  E-value=0.046  Score=41.76  Aligned_cols=36  Identities=14%  Similarity=0.128  Sum_probs=19.7

Q ss_pred             CCcccEEeeccCcCccc-----cccccCCCCCcCEEeecCC
Q 037573          122 LCRLKYLELIDCECLVN-----LPQALHCLSSLTEITVAGC  157 (357)
Q Consensus       122 l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~i~~c  157 (357)
                      .++|++|.++++..++.     +...+...++|++|++++|
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC
Confidence            46666666665433322     2234455666666666665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.55  E-value=0.2  Score=37.89  Aligned_cols=114  Identities=15%  Similarity=0.080  Sum_probs=62.7

Q ss_pred             CCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCC----cccccccCCCCCccEEEecCCCCCcc---
Q 037573          144 HCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNL----KCLPHELHKLSRLQQIEIRNCPSLVS---  216 (357)
Q Consensus       144 ~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~c~~l~~---  216 (357)
                      .+.+.|++|+++++..+..-.-... .+.+...++|+.|++++|.--    ..+-..+...++++.+++++|..-..   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l-~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHH-HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            3568899999887554421110000 001111678999999887421    22333455578888888887532211   


Q ss_pred             -cCCCCCCCCCcceEEeccCC-cch-----hhHhhhccCCcccceeecc
Q 037573          217 -FPERGLPSTNLTAVCVINCE-KLE-----ALLNGIHRLTSHQQLTVEQ  258 (357)
Q Consensus       217 -l~~~~~~~~~L~~L~l~~c~-~l~-----~l~~~~~~l~~L~~L~l~~  258 (357)
                       +.......++|+.+++..+. .++     .+...+...+.|++|++..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence             11111122478887776443 332     3445566777888887765