Citrus Sinensis ID: 037578

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500------
MYYKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQREAEVAEANADLAKKKAGWAKEAKVAEVESAKAVALRDAELQREVEKMNAATRMEKLRAEFVSKANVEYESKVQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNTTNESGGGAGGGDASSSAVREVAGIYRALPPLFQTIYDQTGMTPPPYMGMLPQTQTAVTPPQILGSLALPCTNVVPNNNS
ccEEEccccEEEEEEccccccEEEcccEEEEccEEEEEEEEccEEEEEEEccccccccEEEEEEEEEEEcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccc
ccEEEEccccEEEEEcccccccEEcccEEEEEcEEEEEEEEccEEEEEEHHHHHcccccEEEEEEEEEccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHHccHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccc
MYYKVAGASQFlaitgsgiddVKLAKKAfiwpfqqctvfditpvnyDFEVQAMSAEKlefklpavftigpreddsDSLLRYAKliapkdrnsvHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANikqlvdvpgheyfsylgqKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQRegqgqkeeMRVKTEVKVFENQREAEVAEANADLAKKKAGWAKEAKVAEVESAKAVALRDAELQREVEKMNAATRMEKLRAEFVSKANVEYESKVQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTalggdnravKDFLMIDRGVYQEMGRINAEAVrglqpklniwnttnesgggagggdassSAVREVAGIYralpplfqtiydqtgmtpppymgmlpqtqtavtppqilgslalpctnvvpnnns
MYYKVAgasqflaitgsGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFtigpreddsdSLLRYAKliapkdrnsvhvrEIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGevgaklregqtlqnaakidaetkvvkiqregqgqkeemrvKTEVKVFENQREAEVAEANADLAKKKAGWAKEAKVAEVESAKAVALRDAELQREVEKMNAATRMEKLRAEFVSKANVEYESKVQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSIstalggdnraVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNTTNESGGGAGGGDASSSAVREVAGIYRALPPLFQTIYDQTGMTPPPYMGMLPQTQTAVTPPQILGslalpctnvvpnnns
MYYKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQREAEVAEANADLakkkagwakeakvaevesakavaLRDAELQREVEKMNAATRMEKLRAEFVSKANVEYESKVQEANWELYQKQKEAEAILNLkikeaeakkataeaeFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNTTNEsgggagggdasssaVREVAGIYRALPPLFQTIYDQTGMTPPPYMGMLPQTQTAVTPPQILGSLALPCTNVVPNNNS
**YKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQK***********************************************************************************************************************************V***NVEYESKVQEANWELYQKQKEAEAILNLKIK*********EAEFYARKLAADGDL*******************YLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNT*****************VREVAGIYRALPPLFQTIYDQTGMTPPPYMGMLP**QTAVTPPQILGSLALPCTNV******
MYYKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIA**********EIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQK*******************************************VV*********************************************************************************************YE**VQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEM**************LNIWN**********************AGIYRALPPLFQTIYDQTGMTPPP**********************************
MYYKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVV**************VKTEVKVFENQREAEVAEANADLA***************************LQREVEKMNAATRMEKLRAEFVSKANVEYESKVQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNTTNES*************VREVAGIYRALPPLFQTIYDQTGMTPPPYMGMLPQTQTAVTPPQILGSLALPCTNVVPNNNS
*YYKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQREAEVAEANADLAKKKAGWAKEAKVAEVESAKAVALRDAELQREVEKMNAATRMEKLRAEFVSKANVEYESKVQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNTTN*************SAVREVAGIYRALPPLFQTIYDQTGMTPPPYMGMLPQT****T*******LALPCTN*******
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iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYYKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQREAEVAEANADLAKKKAGWAKEAKVAEVESAKAVALRDAELQREVEKMNAATRMEKLRAEFVSKANVEYESKVQEANWELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNTTNESGGGAGGGDASSSAVREVAGIYRALPPLFQTIYDQTGMTPPPYMGMLPQTQTAVTPPQILGSLALPCTNVVPNNNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query506 2.2.26 [Sep-21-2011]
D2XNQ8478 Flotillin-like protein 1 N/A no 0.934 0.989 0.699 0.0
D2XNR0474 Flotillin-like protein 3 N/A no 0.924 0.987 0.709 0.0
D2XNQ9480 Flotillin-like protein 2 N/A no 0.936 0.987 0.689 0.0
D2XNR1475 Flotillin-like protein 4 N/A no 0.926 0.987 0.718 0.0
D2XNR2472 Flotillin-like protein 6 N/A no 0.918 0.985 0.699 0.0
Q4V3D6463 Flotillin-like protein 2 yes no 0.913 0.997 0.660 0.0
Q501E6470 Flotillin-like protein 1 yes no 0.905 0.974 0.661 0.0
Q9AV57485 Flotillin-like protein 1 yes no 0.932 0.973 0.675 1e-179
Q9LV90479 Flotillin-like protein 3 no no 0.915 0.966 0.645 1e-169
Q8LNW4499 Flotillin-like protein 2 no no 0.932 0.945 0.607 1e-167
>sp|D2XNQ8|FLOT1_MEDTR Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/476 (69%), Positives = 409/476 (85%), Gaps = 3/476 (0%)

Query: 3   YKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKL 62
           Y+VA AS++L ITG+GIDDVKL KKA+I+P Q CTVFD++PVNY FEVQAMSAEKL F L
Sbjct: 2   YRVAKASEYLVITGAGIDDVKLEKKAWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVL 61

Query: 63  PAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKG 122
           PAVFTIGPR DD +SLL+YAKLI+P D+ S HV E+V+GIIEGETRVL ASMTMEEVF+G
Sbjct: 62  PAVFTIGPRVDDYESLLKYAKLISPHDKLSNHVNELVQGIIEGETRVLVASMTMEEVFRG 121

Query: 123 TKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVA 182
           TK+FKQEVF KVQLELNQFGL IYNAN+KQLVDVPGHEYFSYLGQKTQMEAANQA+VDVA
Sbjct: 122 TKEFKQEVFDKVQLELNQFGLWIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDVA 181

Query: 183 EARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQREAE 242
           EA+MKGE+G+KLREGQT+QNAAKIDAETKV+ +QR G+G+K+ ++V+TEVKVFENQREAE
Sbjct: 182 EAKMKGEIGSKLREGQTIQNAAKIDAETKVIAMQRAGEGEKQGIKVRTEVKVFENQREAE 241

Query: 243 VAEANADLAKKKAGWAKEAKVAEVESAKAVALRDAELQREVEKMNAATRMEKLRAEFVSK 302
           VAEAN++LAKKKA W   A+VAE+E+AKAVALR+AELQ EVE+MNA T  EKL+A+F+SK
Sbjct: 242 VAEANSELAKKKAAWTMAAQVAELEAAKAVALREAELQGEVERMNALTTTEKLKADFLSK 301

Query: 303 ANVEYESKVQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQ 362
           A+VEY++KVQEANWELY+KQKEAEAIL  K  EAEA+KA A++ FYARK  A+ +LYAK+
Sbjct: 302 ASVEYDTKVQEANWELYKKQKEAEAILYEKKAEAEAQKALADSTFYARKQEAEAELYAKK 361

Query: 363 KEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKL 422
           KEAEG   LG AQG Y+ ++  ALG +  AV+D+LMI+ G++QE+ +INAEAVRGL+PK+
Sbjct: 362 KEAEGIMTLGNAQGAYVSTLLNALGNNYTAVRDYLMINGGMFQEIAKINAEAVRGLEPKI 421

Query: 423 NIWNTTNESGGGAGGGDASSSAVREVAGIYRALPPLFQTIYDQTGMTPPPYMGMLP 478
           +IW    ++ GG   G   +  ++EVAG+Y+ LPPLF+T+++QTGM PP +MG LP
Sbjct: 422 SIWTNGGDNNGGITEG---AMGMKEVAGVYKMLPPLFKTVHEQTGMFPPAWMGSLP 474
May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles (By similarity). May be involved in nodule formation.
Medicago truncatula (taxid: 3880)
>sp|D2XNR0|FLOT3_MEDTR Flotillin-like protein 3 OS=Medicago truncatula GN=FLOT3 PE=2 SV=1 Back     alignment and function description
>sp|D2XNQ9|FLOT2_MEDTR Flotillin-like protein 2 OS=Medicago truncatula GN=FLOT2 PE=2 SV=1 Back     alignment and function description
>sp|D2XNR1|FLOT4_MEDTR Flotillin-like protein 4 OS=Medicago truncatula GN=FLOT4 PE=2 SV=1 Back     alignment and function description
>sp|D2XNR2|FLOT6_MEDTR Flotillin-like protein 6 OS=Medicago truncatula GN=FLOT6 PE=2 SV=1 Back     alignment and function description
>sp|Q4V3D6|FLOT2_ARATH Flotillin-like protein 2 OS=Arabidopsis thaliana GN=FLOT2 PE=2 SV=1 Back     alignment and function description
>sp|Q501E6|FLOT1_ARATH Flotillin-like protein 1 OS=Arabidopsis thaliana GN=FLOT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9AV57|FLOT1_ORYSJ Flotillin-like protein 1 OS=Oryza sativa subsp. japonica GN=FLOT1 PE=3 SV=1 Back     alignment and function description
>sp|Q9LV90|FLOT3_ARATH Flotillin-like protein 3 OS=Arabidopsis thaliana GN=FLOT3 PE=2 SV=1 Back     alignment and function description
>sp|Q8LNW4|FLOT2_ORYSJ Flotillin-like protein 2 OS=Oryza sativa subsp. japonica GN=FLOT2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
224143233483 predicted protein [Populus trichocarpa] 0.940 0.985 0.715 0.0
255557751481 Flotillin-1, putative [Ricinus communis] 0.934 0.983 0.713 0.0
224092534484 predicted protein [Populus trichocarpa] 0.946 0.989 0.698 0.0
357466105 959 Flotillin-like protein [Medicago truncat 0.934 0.493 0.699 0.0
300680951478 RecName: Full=Flotillin-like protein 1 g 0.934 0.989 0.699 0.0
300680953474 RecName: Full=Flotillin-like protein 3 g 0.924 0.987 0.709 0.0
147837045488 hypothetical protein VITISV_002157 [Viti 0.938 0.973 0.713 0.0
351722212476 nodulin [Glycine max] gi|3851530|gb|AAC7 0.930 0.989 0.697 0.0
225430420488 PREDICTED: flotillin-like protein 1 [Vit 0.938 0.973 0.711 0.0
255644924476 unknown [Glycine max] 0.930 0.989 0.691 0.0
>gi|224143233|ref|XP_002324888.1| predicted protein [Populus trichocarpa] gi|222866322|gb|EEF03453.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/478 (71%), Positives = 412/478 (86%), Gaps = 2/478 (0%)

Query: 3   YKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKL 62
           Y+VA  S+FL ITG GI D+KLAKK +I P Q CTVFD++PVNY FEVQAMSAEKL F L
Sbjct: 2   YRVASPSEFLVITGVGISDIKLAKKGWILPGQSCTVFDVSPVNYTFEVQAMSAEKLPFVL 61

Query: 63  PAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKG 122
           PAVFTIGPR DD  SL +YAKLI+  D+ S HV+E+V+GIIEGETRVLAASMTMEEVFKG
Sbjct: 62  PAVFTIGPRVDDEQSLFKYAKLISRHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFKG 121

Query: 123 TKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVA 182
           TK+FKQEVF KVQLELNQFGL+IYNAN+KQLVDVPGHEYFSYLGQKTQMEAANQA+VDVA
Sbjct: 122 TKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDVA 181

Query: 183 EARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQREAE 242
           EA+MKGEVG+K REGQTLQNAA+IDAETK++  QR+G G+KEE++VKTEVK++EN REAE
Sbjct: 182 EAKMKGEVGSKQREGQTLQNAARIDAETKIIATQRQGDGKKEEIKVKTEVKIYENHREAE 241

Query: 243 VAEANADLAKKKAGWAKEAKVAEVESAKAVALRDAELQREVEKMNAATRMEKLRAEFVSK 302
           VAEANADLAKKKAGW+KEA+VAEVE+ KAV+LR+AELQREVE+MNA TR EKL+AEF+S+
Sbjct: 242 VAEANADLAKKKAGWSKEAQVAEVEATKAVSLREAELQREVERMNALTRTEKLKAEFLSQ 301

Query: 303 ANVEYESKVQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQ 362
           A+VEYE+KVQEANWELY KQK AEAIL  K KEA+A+KATA+A FYAR+  ADG+LY+KQ
Sbjct: 302 ASVEYETKVQEANWELYTKQKAAEAILYEKQKEADAQKATADATFYARQQVADGELYSKQ 361

Query: 363 KEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKL 422
           KEAEG  AL +AQG Y++++  ALGG+  A++D+LMI+ G++QE+ RINA+AV GLQPK+
Sbjct: 362 KEAEGLVALAQAQGVYIRTLLDALGGNYAALRDYLMINSGMFQEIARINADAVHGLQPKI 421

Query: 423 NIWNTTNESGGGAGGGDASSSAVREVAGIYRALPPLFQTIYDQTGMTPPPYMGMLPQT 480
           +IW  TN + G A  G    +A++EVAG+Y+ LPPLF+T+ DQTGM PP +MG L  +
Sbjct: 422 SIW--TNGNSGEANDGTGGGNAMKEVAGVYKMLPPLFKTVQDQTGMLPPAWMGTLTDS 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557751|ref|XP_002519905.1| Flotillin-1, putative [Ricinus communis] gi|223540951|gb|EEF42509.1| Flotillin-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224092534|ref|XP_002309650.1| predicted protein [Populus trichocarpa] gi|222855626|gb|EEE93173.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357466105|ref|XP_003603337.1| Flotillin-like protein [Medicago truncatula] gi|355492385|gb|AES73588.1| Flotillin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|300680951|sp|D2XNQ8.1|FLOT1_MEDTR RecName: Full=Flotillin-like protein 1 gi|282597660|gb|ADA83094.1| flotillin-like protein 1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|300680953|sp|D2XNR0.1|FLOT3_MEDTR RecName: Full=Flotillin-like protein 3 gi|282597664|gb|ADA83096.1| flotillin-like protein 3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|147837045|emb|CAN77054.1| hypothetical protein VITISV_002157 [Vitis vinifera] Back     alignment and taxonomy information
>gi|351722212|ref|NP_001237748.1| nodulin [Glycine max] gi|3851530|gb|AAC72337.1| nodulin [Glycine max] Back     alignment and taxonomy information
>gi|225430420|ref|XP_002283077.1| PREDICTED: flotillin-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255644924|gb|ACU22962.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
UNIPROTKB|D2XNR0474 FLOT3 "Flotillin-like protein 0.924 0.987 0.652 1.7e-167
UNIPROTKB|D2XNQ9480 FLOT2 "Flotillin-like protein 0.936 0.987 0.633 4e-164
UNIPROTKB|D2XNR1475 FLOT4 "Flotillin-like protein 0.926 0.987 0.657 2.5e-161
TAIR|locus:2146975463 AT5G25260 "AT5G25260" [Arabido 0.909 0.993 0.602 1.5e-155
TAIR|locus:2177729479 AT5G64870 "AT5G64870" [Arabido 0.915 0.966 0.597 6.4e-147
TAIR|locus:2146965470 FLOT1 "AT5G25250" [Arabidopsis 0.824 0.887 0.635 2.3e-142
FB|FBgn0024754426 Flo-1 "Flotillin-1" [Drosophil 0.575 0.683 0.237 1e-14
UNIPROTKB|Q81YS5526 BAS0525 "SPFH domain/band 7 fa 0.420 0.404 0.261 3e-08
TIGR_CMR|BA_0557526 BA_0557 "SPFH domain/band 7 fa 0.420 0.404 0.261 3e-08
UNIPROTKB|B0V110182 FLOT1 "Flotillin-1" [Homo sapi 0.272 0.758 0.239 4.9e-08
UNIPROTKB|D2XNR0 FLOT3 "Flotillin-like protein 3" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
 Score = 1561 (554.6 bits), Expect = 1.7e-167, Sum P(2) = 1.7e-167
 Identities = 310/475 (65%), Positives = 375/475 (78%)

Query:     3 YKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKL 62
             Y+VA AS++LAITG+GIDD+KL KKA+I+P Q CTVFD++PVNY FEVQAMSAEKL F L
Sbjct:     2 YRVAKASEYLAITGAGIDDIKLQKKAWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVL 61

Query:    63 PAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKG 122
             PAVFTIGPR DD +SLL+YAKLI+P DR+S HV E+V+GIIEGETRVLAASMTMEEVF+G
Sbjct:    62 PAVFTIGPRVDDQESLLKYAKLISPHDRHSNHVNELVQGIIEGETRVLAASMTMEEVFRG 121

Query:   123 TKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVA 182
             TKQFKQEVF KVQLELNQFGL+IYNAN+KQLVDVPGHEYFSYLGQKTQMEAANQAKVDVA
Sbjct:   122 TKQFKQEVFDKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVA 181

Query:   183 EARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQREAE 242
             EA+MKGE+G+KLR GQTLQNAAKIDAETKV+ +QR G+ +K+ ++V+TEVKVFENQREAE
Sbjct:   182 EAKMKGEIGSKLRVGQTLQNAAKIDAETKVIAMQRAGESEKQGIKVRTEVKVFENQREAE 241

Query:   243 VAEANADLXXXXXXXXXXXXXXXXXXXXXXXLRDAELQREVEKMNAATRMEKLRAEFVSK 302
             VAEAN++L                       LR+AELQ EVEKMNA T  EKL+A+ +SK
Sbjct:   242 VAEANSELAKKKAAWTKAAQVAEVEAKKAVALREAELQGEVEKMNALTTTEKLKADLLSK 301

Query:   303 ANVEYESKVQEANWELYQKQKEAEAILNLXXXXXXXXXXXXXXXFYARKLAADGDLYAKQ 362
             A+V+YE+KVQEANWELY+KQKEAEAIL                 FYARK  A+ +LYAK+
Sbjct:   302 ASVQYETKVQEANWELYKKQKEAEAILFEKKAEAEAQKALADSTFYARKQEAEAELYAKK 361

Query:   363 KEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKL 422
             KEAEG   LG AQG Y+ ++  ALG +  AV+D+LMI+ G++QE+ +INAEAVRGL+PK+
Sbjct:   362 KEAEGIVTLGNAQGAYVSTLLNALGNNYTAVRDYLMINGGMFQEIAKINAEAVRGLEPKI 421

Query:   423 NIWNTTNEXXXXXXXXXXXXXXVREVAGIYRALPPLFQTIYDQTGMTPPPYMGML 477
             +IW  TN               ++EVAG+Y+ LPPLF+T+++QTGM PP +MG L
Sbjct:   422 SIW--TN-----GGDNSGGEGAMKEVAGVYKMLPPLFKTVHEQTGMLPPAWMGSL 469
GO:0048364 "root development" evidence=IMP
UNIPROTKB|D2XNQ9 FLOT2 "Flotillin-like protein 2" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|D2XNR1 FLOT4 "Flotillin-like protein 4" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
TAIR|locus:2146975 AT5G25260 "AT5G25260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177729 AT5G64870 "AT5G64870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146965 FLOT1 "AT5G25250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0024754 Flo-1 "Flotillin-1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q81YS5 BAS0525 "SPFH domain/band 7 family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0557 BA_0557 "SPFH domain/band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|B0V110 FLOT1 "Flotillin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
D2XNQ9FLOT2_MEDTRNo assigned EC number0.68970.93670.9875N/Ano
D2XNQ8FLOT1_MEDTRNo assigned EC number0.69950.93470.9895N/Ano
Q501E6FLOT1_ARATHNo assigned EC number0.66100.90510.9744yesno
D2XNR0FLOT3_MEDTRNo assigned EC number0.70940.92490.9873N/Ano
D2XNR1FLOT4_MEDTRNo assigned EC number0.71840.92680.9873N/Ano
D2XNR2FLOT6_MEDTRNo assigned EC number0.69950.91890.9851N/Ano
Q9AV57FLOT1_ORYSJNo assigned EC number0.67570.93280.9731yesno
Q4V3D6FLOT2_ARATHNo assigned EC number0.66030.91300.9978yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
cd03399128 cd03399, Band_7_flotillin, Band_7_flotillin: a sub 8e-26
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 4e-14
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 6e-11
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 5e-05
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 7e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PRK12472508 PRK12472, PRK12472, hypothetical protein; Provisio 0.002
COG5281 833 COG5281, COG5281, Phage-related minor tail protein 0.004
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
 Score =  101 bits (255), Expect = 8e-26
 Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 39  FDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVRE 97
             +T +      +  ++ + +   + AVF +     +        + +   +     + E
Sbjct: 2   LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEE---EIEE 58

Query: 98  IVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVP 157
           +VK ++EG  R +  +MT+EE+++   +F ++V   V  +LN+ GL + +  IK + D  
Sbjct: 59  LVKEVLEGHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTD 118

Query: 158 GHEYFSYLGQK 168
           G  Y + LG  
Sbjct: 119 G--YLNNLGDA 127

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Length = 128
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 506
KOG2668428 consensus Flotillins [Intracellular trafficking, s 100.0
COG2268548 Uncharacterized protein conserved in bacteria [Fun 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 99.96
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 99.96
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 99.95
PRK11029334 FtsH protease regulator HflC; Provisional 99.95
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 99.94
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 99.94
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 99.94
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 99.94
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 99.93
PRK10930419 FtsH protease regulator HflK; Provisional 99.92
KOG2620301 consensus Prohibitins and stomatins of the PID sup 99.92
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.89
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 99.89
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.88
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.87
KOG2621288 consensus Prohibitins and stomatins of the PID sup 99.86
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.83
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.65
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.52
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.28
KOG3090290 consensus Prohibitin-like protein [Posttranslation 99.21
KOG2668428 consensus Flotillins [Intracellular trafficking, s 99.14
KOG3083271 consensus Prohibitin [Posttranslational modificati 99.01
KOG2962322 consensus Prohibitin-related membrane protease sub 98.54
PTZ00491850 major vault protein; Provisional 98.47
PF13421211 Band_7_1: SPFH domain-Band 7 family 98.22
COG2268548 Uncharacterized protein conserved in bacteria [Fun 98.04
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 97.75
PTZ00121 2084 MAEBL; Provisional 96.96
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 96.68
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 96.39
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 96.32
PTZ00121 2084 MAEBL; Provisional 96.22
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 95.64
PRK11029334 FtsH protease regulator HflC; Provisional 95.41
PRK10930419 FtsH protease regulator HflK; Provisional 95.22
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 94.65
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 91.81
COG3064387 TolA Membrane protein involved in colicin uptake [ 91.46
PTZ00491850 major vault protein; Provisional 85.27
PRK13665316 hypothetical protein; Provisional 83.34
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 80.23
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.9e-65  Score=498.33  Aligned_cols=411  Identities=38%  Similarity=0.550  Sum_probs=336.2

Q ss_pred             cEEEecCCeEEEEEccCCCceeecCcEEEecCceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHH
Q 037578            2 YYKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLR   80 (506)
Q Consensus         2 ~y~~~~p~ealVvtg~g~~rvv~gG~~fviP~q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~   80 (506)
                      +|++|+|+++|+|||+|..+++.-.+.|+||||+|.+||+.++++++.++ ++|++++|++|+++|+++|..+|++.++.
T Consensus         1 ~f~~~~~~~~l~itg~g~~~~~lv~~~wvf~wq~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL~   80 (428)
T KOG2668|consen    1 MFKVAGASQYLAITGGGIEDIKLVKKSWVFPWQQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELLL   80 (428)
T ss_pred             CCccCCccceEEeecccccCceecccceeeeeeeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHHH
Confidence            58999999999999999877776667777788999999999999999988 89999999999999999998778777776


Q ss_pred             HHH-hhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCc
Q 037578           81 YAK-LIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGH  159 (506)
Q Consensus        81 aa~-~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~  159 (506)
                      +++ .|+  |++..+|..++..+|+||+|.++|+||+||||.||++|...|++.+..||..|||.|.|++|+|+.|.+|.
T Consensus        81 ~A~e~fl--gK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~  158 (428)
T KOG2668|consen   81 YACEQFL--GKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGH  158 (428)
T ss_pred             HHHHHhc--CCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccch
Confidence            665 564  57889999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHhHhhhHH
Q 037578          160 EYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQR  239 (506)
Q Consensus       160 ~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~~~~~~~Ak~~~e~~Ia~a~~~~~~~~ae~~~~~~i~~a~~~~  239 (506)
                      +||.+||+...+++.|+|+|.+||++++.-|  .|+.+.+..+.+++.+|+.|+                          
T Consensus       159 ~YlssLGka~taev~rdArIgvAEAk~eaGi--kEa~~~~~~~aak~~aetkI~--------------------------  210 (428)
T KOG2668|consen  159 EYLSSLGKATTAEVARDARIGVAEAKREAGI--KEATGLTEQNAAKIDAETKIA--------------------------  210 (428)
T ss_pred             HHHHHhhhHHHHHHHhhcccchHHhhhhcch--hhhhHHHHHhHHhhhhhhhHH--------------------------
Confidence            7999999999999999999999999985555  555566666777777777666                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--HHHHHHHHHHHHhhhhhhhH
Q 037578          240 EAEVAEANADLAKKKAGWAKEAKVAEVESAKAVALRDAELQREV----------EKMN--AATRMEKLRAEFVSKANVEY  307 (506)
Q Consensus       240 e~~~A~a~a~~~~~~a~~~~e~~~a~a~a~~a~~~~~~~~q~ev----------~~~~--~~~~~~~l~~e~~~~A~~~~  307 (506)
                           .++++++++++.+..+++..+++|+++|+++.+..++.+          ++.+  ++++++..+.+.++.|.+++
T Consensus       211 -----~~qR~~el~Ka~~dveV~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~  285 (428)
T KOG2668|consen  211 -----SAQRTKELIKAATDVEVNTNKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRT  285 (428)
T ss_pred             -----HhhhhHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                 334445555555555555555555555555544433322          2222  55677778888888888885


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 037578          308 ESKVQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALG  387 (506)
Q Consensus       308 ~~~~~~AeA~~~~~~~~AeA~~~~~~~eAea~~~~AeA~~~~~~~~Aea~~~~~~aeAeai~~~g~AeAe~~~~~aeA~~  387 (506)
                           ||+|+.++.++.|||.+....++|+|              +|+-++.+++|||-+|.+.+.|||+.++++++++.
T Consensus       286 -----paeAe~~r~~klaEAnk~~~~~qaqA--------------EA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~  346 (428)
T KOG2668|consen  286 -----PAEAEVERETKLAEANKELYNKQAQA--------------EAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQ  346 (428)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence                 89999999999999988776665543              44556667788888999999999999999999999


Q ss_pred             CCHH-HHHHHHhHhhhhHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCCCCCCCchHHHHHHHHhhcchHHHHHHhhc
Q 037578          388 GDNR-AVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNTTNESGGGAGGGDASSSAVREVAGIYRALPPLFQTIYDQT  466 (506)
Q Consensus       388 ~~~~-A~~~~~~~~~~~lp~i~~~~a~~~~~i~~ki~i~~~g~~~g~~~~~g~g~~~~~~~v~~~~~~lp~~~~~i~~~t  466 (506)
                      .+++ ++.. ++|+.  ||.|+..++.||.+. +||++|++|||.+       |++++|+.|.+++.+|||+++.|...+
T Consensus       347 ~y~~aa~l~-~lLea--lp~Ia~~ia~plakt-nkI~v~s~g~~~~-------g~~k~t~dV~~l~~~LP~~v~~ltgv~  415 (428)
T KOG2668|consen  347 AYAQAAYLR-TLLEA--LPMIAAEIAAPLAKT-NKISVWSHGGGQM-------GNAKVTGDVAGLYKMLPPSVDTLTGVD  415 (428)
T ss_pred             HhhhhHHHH-HHHHH--HHHHHHHhccchhhc-CeEEEEecCCccc-------cchhhHHHHHHHHHhCcHHHhhhcccc
Confidence            9887 4553 67786  999999999999998 9999999876531       447899999999999999988765555


Q ss_pred             CCCchhhhcCC
Q 037578          467 GMTPPPYMGML  477 (506)
Q Consensus       467 Gidl~~~l~~~  477 (506)
                      |..+|.|++++
T Consensus       416 ~sq~p~~~~~~  426 (428)
T KOG2668|consen  416 GSQPPAWIGTL  426 (428)
T ss_pred             cccCccccccc
Confidence            55556555544

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only] Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 7e-21
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-13
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-04
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
 Score = 88.0 bits (218), Expect = 7e-21
 Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 8/147 (5%)

Query: 32  PFQQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDR 90
                    +  +      +   +AE +   +  V  +     + + L    +    K+ 
Sbjct: 3   SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIM-TEKELLAVACEQFLGKNV 61

Query: 91  NSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANI 150
               ++ +V   +EG  R +  ++T+E++++   QF + V      ++ + G+ I +  I
Sbjct: 62  Q--DIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 119

Query: 151 KQLVDVPGHEYFSYLGQKTQMEAANQA 177
           K + D     Y S LG+     +   +
Sbjct: 120 KDVYDKVD--YLSSLGK--TQTSGPSS 142
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.93
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.87
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.84
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.67
2zuo_A861 MVP, major vault protein; repeat domains, protein- 98.93
2zuo_A861 MVP, major vault protein; repeat domains, protein- 91.85
3v6i_B105 V-type ATP synthase, subunit (VAPC-therm); periphe 86.11
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
Probab=99.93  E-value=2.6e-26  Score=207.89  Aligned_cols=137  Identities=17%  Similarity=0.277  Sum_probs=126.6

Q ss_pred             CceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhh
Q 037578           33 FQQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLA  111 (506)
Q Consensus        33 ~q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~ii  111 (506)
                      +|++.++|+|+++++++++ ++|+|+++|.||++++|+|. +||..++.++++|++  .+...+..++.++++++||+++
T Consensus         4 i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~-dd~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~LR~vi   80 (143)
T 1win_A            4 GSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIM-TEKELLAVACEQFLG--KNVQDIKNVVLQTLEGHLRSIL   80 (143)
T ss_dssp             CCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEEC-CCSSCCHHHHHHHSS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEEC-CCHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999988 89999999999999999995 478888888888753  4568899999999999999999


Q ss_pred             hhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhhhhhhhHHH
Q 037578          112 ASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAA  174 (506)
Q Consensus       112 g~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~~~~A~~~  174 (506)
                      |+|||+|++++|+.|+..|++.++.++.+|||+|.+|+|+||++|++  |+++||+++.|+++
T Consensus        81 G~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~--~~~am~~~~~Ae~~  141 (143)
T 1win_A           81 GTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVD--YLSSLGKTQTSGPS  141 (143)
T ss_dssp             HHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTC--HHHHHCCCCCCCCC
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHH--HHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999997  99999999888754
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 506
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 7e-06
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 21/140 (15%), Positives = 56/140 (40%), Gaps = 8/140 (5%)

Query: 39  FDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVRE 97
             +  +      +   +AE +   +  V  +    +     +   + +    +N   ++ 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFL---GKNVQDIKN 66

Query: 98  IVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVP 157
           +V   +EG  R +  ++T+E++++   QF + V      ++ + G+ I +  IK +    
Sbjct: 67  VVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV--YD 124

Query: 158 GHEYFSYLGQKTQMEAANQA 177
             +Y S LG+     +   +
Sbjct: 125 KVDYLSSLGK--TQTSGPSS 142

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.88
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7.2e-23  Score=183.06  Aligned_cols=134  Identities=17%  Similarity=0.292  Sum_probs=122.7

Q ss_pred             ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhh
Q 037578           34 QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAA  112 (506)
Q Consensus        34 q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig  112 (506)
                      .++++|||+.++++++++ ++|+|++||+|+++++|+|. +++..+..++++|++  .+.+.+...+.++++++||+++|
T Consensus         5 ~s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~-~~~~~~~~a~~~~l~--~~~~~~~~~i~~~~~~~lR~vig   81 (143)
T d1wina_           5 SSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIM-TEKELLAVACEQFLG--KNVQDIKNVVLQTLEGHLRSILG   81 (143)
T ss_dssp             CCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEEC-CCSSCCHHHHHHHSS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEc-CcHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhc
Confidence            356789999999999988 79999999999999999996 566667777788864  46788999999999999999999


Q ss_pred             hccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhhhhhhhH
Q 037578          113 SMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQME  172 (506)
Q Consensus       113 ~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~~~~A~  172 (506)
                      +||+++|+++|+.|...|.+.+..+|.+|||+|.++.|+||+||++  |+++||+++.|.
T Consensus        82 ~~~l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~--~~~a~~~~q~A~  139 (143)
T d1wina_          82 TLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVD--YLSSLGKTQTSG  139 (143)
T ss_dssp             HSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTC--HHHHHCCCCCCC
T ss_pred             cccHHHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHH--HHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999987  999999988764