Citrus Sinensis ID: 037587
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | 2.2.26 [Sep-21-2011] | |||||||
| Q9T065 | 469 | 1-aminocyclopropane-1-car | yes | no | 0.984 | 0.974 | 0.683 | 0.0 | |
| P37821 | 473 | 1-aminocyclopropane-1-car | N/A | no | 0.971 | 0.953 | 0.682 | 0.0 | |
| Q00257 | 475 | 1-aminocyclopropane-1-car | N/A | no | 0.915 | 0.894 | 0.724 | 0.0 | |
| Q9S9U6 | 460 | 1-aminocyclopropane-1-car | no | no | 0.965 | 0.973 | 0.675 | 0.0 | |
| Q42881 | 469 | 1-aminocyclopropane-1-car | N/A | no | 0.969 | 0.959 | 0.681 | 0.0 | |
| Q9M2Y8 | 470 | 1-aminocyclopropane-1-car | no | no | 0.982 | 0.970 | 0.658 | 0.0 | |
| Q37001 | 470 | 1-aminocyclopropane-1-car | no | no | 0.982 | 0.970 | 0.651 | 0.0 | |
| Q43309 | 474 | 1-aminocyclopropane-1-car | no | no | 0.924 | 0.905 | 0.699 | 1e-180 | |
| Q10DK7 | 487 | 1-aminocyclopropane-1-car | yes | no | 0.931 | 0.887 | 0.636 | 1e-168 | |
| A2XLL2 | 487 | 1-aminocyclopropane-1-car | N/A | no | 0.931 | 0.887 | 0.636 | 1e-168 |
| >sp|Q9T065|1A18_ARATH 1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1 | Back alignment and function desciption |
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Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/471 (68%), Positives = 380/471 (80%), Gaps = 14/471 (2%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS+ ASC++HGQDSSYF GWE YE NPYD++ NP GIIQMGLAENQLSFDL+ESWLA N
Sbjct: 3 LLSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLAKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A +R G+S+FRELALFQDYHG P K + M+ RGN+V F+PNKLVLTAG+T
Sbjct: 63 PDAANFQREGQSIFRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGATP 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR G EIVPI C S+NGFRIT ALE AY
Sbjct: 123 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCKSANGFRITKVALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
+QAQ LNLKVKGVLITNPSNPLGT T ELNHL++F K+IH++SDEIYSGTVF +P
Sbjct: 183 EQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTNP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
FIS+ME + DR + E+ D++ R+HIVYSLSKD +PGFRVG+IYSN++ VVSAATKMS
Sbjct: 242 -GFISVMEVLKDRKL-ENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGL+SSQTQYLLS +LSDK FT NY++EN+ RL+ R + LVSGL+ AGI CLKSNAGLF
Sbjct: 300 SFGLISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI++EV LNISPGSSCHCNEPGWFR+CFAN++EETL+V
Sbjct: 360 CWVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKV 419
Query: 421 ALQRIKVFAQSCNP--------QMLLLQRRSIIGKWISKLSSSSSYDQEPD 463
AL R+K F +P Q L R+ + W+ +L S +D+EP+
Sbjct: 420 ALDRLKRFVDGPSPTRRSQSEHQRLKNLRKMKVSNWVFRL---SFHDREPE 467
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|P37821|1A1C_MALDO 1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/463 (68%), Positives = 371/463 (80%), Gaps = 12/463 (2%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A+ +SHGQDSSYFLGW+ YE NPY ++HN +GIIQMGLAENQL FDLLESWLA N
Sbjct: 3 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
EA K+NGES+F ELALFQDYHG P KK +V MA IRGNKV FDPN LVLTAG+T+
Sbjct: 63 PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANET +FCLADPG+A L+PTPYYPGFDRDLKWR GVEIVPIHC+SSNGF+IT +ALE AY
Sbjct: 123 ANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+A+ NL+VKGVL+TNPSNPLGT MT EL L++F + K IH++SDEIYSGT F SP
Sbjct: 183 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
SFIS+ME + DRN DE+ ++W R+H+VYSLSKD +PGFRVG IYSN++ VV+AATKMS
Sbjct: 242 -SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQ+LLS MLSDKK T NY+ EN KRL++R++ LVSGL+ +GI CL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI++EV LNISPGSSCHC EPGWFR+CFAN+ E TL +
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 421 ALQRIKVFA----------QSCNPQMLLLQRRSIIGKWISKLS 453
A+QR+K F L RR + KW+S+LS
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGGSQSSHLSHSRRQSLTKWVSRLS 463
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Malus domestica (taxid: 3750) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q00257|1A12_CUCMA 1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1 | Back alignment and function description |
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Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/428 (72%), Positives = 366/428 (85%), Gaps = 3/428 (0%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLS A+C+SHGQDSSYFLGWEAYENNP+ NP+GIIQMGLAENQLSFDLLESWL+ N
Sbjct: 3 MLSTKATCNSHGQDSSYFLGWEAYENNPFHHTSNPNGIIQMGLAENQLSFDLLESWLSKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KR+G+S+FRELALFQDYHG P KK LV+ MA IRGNKV F+ N +VLTAG+T+
Sbjct: 63 PDAASFKRDGKSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVSFEANNIVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+ GDAFLLPTPYYPGFDRDLKWR GVEIVPIHC+SSNGF+IT SALE AY
Sbjct: 123 ANETLMFCLAEAGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITQSALEQAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
+ AQT NL+VKGVL+TNPSNPLGT M ELN + +F SK IH++SDEIYSGTVF SP
Sbjct: 183 KDAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVFGSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S ME + +R+ E +++W R+HIVYSLSKD +PGFRVG IYSN++ VV+AATKMS
Sbjct: 242 -GFVSAMEVLKERS-SEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKFT +Y+ EN+KRL++R++MLVSGL+ AGI CL SNAGLF
Sbjct: 300 SFGLVSSQTQYLLSAMLSDKKFTISYISENQKRLKQRQKMLVSGLQKAGINCLDSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL S+ FE+E ELWKKI++EVGLNISPGSSCHC EPGWFR+CFAN++E TL++
Sbjct: 360 CWVDMRHLLESDKFESELELWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSESTLKL 419
Query: 421 ALQRIKVF 428
A++R+K F
Sbjct: 420 AVRRLKSF 427
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita maxima (taxid: 3661) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9S9U6|1A111_ARATH 1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana GN=ACS11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/459 (67%), Positives = 375/459 (81%), Gaps = 11/459 (2%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLS DSHGQDSSYFLGW+ YE NP+ + N SGI+QMGLAENQLSFDL+E WL +
Sbjct: 1 MLSSKVVGDSHGQDSSYFLGWQEYEKNPFHESFNTSGIVQMGLAENQLSFDLIEKWLEEH 60
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
E + LK+N ES+FR+LALFQDYHG P K + K M +IR NKVKFD NK+VLTAGST+
Sbjct: 61 PEVLGLKKNDESVFRQLALFQDYHGLPAFKDAMAKFMGKIRENKVKFDTNKMVLTAGSTS 120
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+PGDAFL+P PYYPGFDRDLKWR GVEIVPIHC SSNG++IT ALE+AY
Sbjct: 121 ANETLMFCLANPGDAFLIPAPYYPGFDRDLKWRTGVEIVPIHCVSSNGYKITEDALEDAY 180
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
++A NL VKGVLITNPSNPLGT+ T +EL+ L+ F+ +K+IH+VSDEIYSGTVFDSP
Sbjct: 181 ERALKHNLNVKGVLITNPSNPLGTSTTREELDLLLTFTSTKKIHMVSDEIYSGTVFDSP- 239
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F S++E D+N+ L +IH+VYSLSKD +PGFRVG+IYSNNE+VVSAATKMS
Sbjct: 240 -EFTSVLEVAKDKNM----GLDGKIHVVYSLSKDLGLPGFRVGLIYSNNEKVVSAATKMS 294
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGL+SSQTQ+LL+ +LSD++FT NY++EN+KRLR+RK+ LVSGLK AGI CLKSNAGLF
Sbjct: 295 SFGLISSQTQHLLANLLSDERFTTNYLEENKKRLRERKDRLVSGLKEAGISCLKSNAGLF 354
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVD+RHLL SNTFEAE LW KI+ EVGLNISPGSSCHC+EPGWFR+CFAN++++T++V
Sbjct: 355 CWVDLRHLLKSNTFEAEHSLWTKIVCEVGLNISPGSSCHCDEPGWFRVCFANMSDQTMEV 414
Query: 421 ALQRIKVFAQSCNP-----QMLLLQRRSIIGKWISKLSS 454
A+ R+K F + N M +RRS+I KW+SKLSS
Sbjct: 415 AMDRVKGFVDNNNGGKQKRTMWDTRRRSLINKWVSKLSS 453
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q42881|1A13_SOLLC 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/462 (68%), Positives = 370/462 (80%), Gaps = 12/462 (2%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS A+C+SHGQDSSYFLGW+ YE NPYD++ NP GIIQMGLAENQLSFDLLESWLA N
Sbjct: 3 LLSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLAQN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KRNGES+FRELALFQDYHG P K + K M+ IRGN+V FD N LVLTAG+T+
Sbjct: 63 PDAAGFKRNGESIFRELALFQDYHGLPAFKNAMTKFMSEIRGNRVSFDSNNLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+ GDAFLLPTPYYPGFDRDLKWR G EIVPIHCSSSNGFRIT SALE AY
Sbjct: 123 ANETLMFCLANQGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFRITESALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
A+ NLKVKGVL+TNPSNPLGT + EL L+ F K IH++SDEIYSGTVF+SP
Sbjct: 183 LDAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVFNSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S+ME ++++N ++ +W R+HIVYSLSKD +PGFR+G IYSN+E VVSAATKMS
Sbjct: 242 -GFVSVMEVLIEKNYMKT-RVWERVHIVYSLSKDLGLPGFRIGAIYSNDEMVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKFT Y+ EN+KRL+KR MLV GLK AGI CL+SNAGLF
Sbjct: 300 SFGLVSSQTQYLLSCMLSDKKFTKKYISENQKRLKKRHAMLVKGLKSAGINCLESNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SN F+AE +LWKKI+++VGLNISPGSSCHC EPGWFR+CFAN++E+TL +
Sbjct: 360 CWVDMRHLLSSNNFDAEMDLWKKIVYDVGLNISPGSSCHCTEPGWFRVCFANMSEDTLDL 419
Query: 421 ALQRIKVFAQSCNPQMLLLQ---------RRSIIGKWISKLS 453
A++RIK F +S P Q ++ KW+ +LS
Sbjct: 420 AMRRIKDFVESTAPNATNHQNQQQSNANSKKKSFSKWVFRLS 461
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9M2Y8|1A19_ARATH 1-aminocyclopropane-1-carboxylate synthase 9 OS=Arabidopsis thaliana GN=ACS9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/471 (65%), Positives = 386/471 (81%), Gaps = 15/471 (3%)
Query: 2 LSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQ 61
LSR + ++HGQDSSYFLGWE YE NPYD++ NP+GIIQMGLAENQL FDL+E+WLA N
Sbjct: 4 LSRKVTSNAHGQDSSYFLGWEEYEKNPYDEIKNPNGIIQMGLAENQLCFDLIETWLAKNP 63
Query: 62 EAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAA 121
+A LK++G+S+F+ELALFQDYHG P+ KK L + M IRGN+V FDP+K+VL AGST+A
Sbjct: 64 DAAGLKKDGQSIFKELALFQDYHGLPEFKKALAEFMEEIRGNRVTFDPSKIVLAAGSTSA 123
Query: 122 NETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181
NETLMFCLA+PGDAFLLPTPYYPGFDRDLKWR G EIVPIHCSSSNGF+IT SAL+ AYQ
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQ 183
Query: 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241
QAQ L+LKVKGVL+TNPSNPLGT +T +ELN L++F SK IH++SDEIYSGTVF
Sbjct: 184 QAQKLDLKVKGVLVTNPSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFG--FE 241
Query: 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS 301
F+S+M+ + D+N+ E+ ++ R+HIVYSLSKD +PGFRVG IYSN+E VVSAATKMSS
Sbjct: 242 QFVSVMDVLKDKNL-ENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS 300
Query: 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFC 361
FGLVSSQTQYLLS +LSDKKFT Y+ EN+KRL+ R++ LVSGL+ AGI CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFC 360
Query: 362 WVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVA 421
WVDMRHLL +NTFEAE ELWKKI+++V LNISPGSSCHC EPGWFR+CFAN++E+TL +A
Sbjct: 361 WVDMRHLLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLA 420
Query: 422 LQRIKVFAQSCNPQMLLLQ---------RRSIIGKWISKLSSSSSYDQEPD 463
++R+K + +S + + ++ + R+ + W+ ++S + D+ PD
Sbjct: 421 MKRLKEYVESTDSRRVISKSSHDRIKSLRKRTVSNWVFRVSWT---DRVPD 468
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q37001|1A15_ARATH 1-aminocyclopropane-1-carboxylate synthase 5 OS=Arabidopsis thaliana GN=ACS5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/471 (65%), Positives = 381/471 (80%), Gaps = 15/471 (3%)
Query: 2 LSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQ 61
LS + + HGQDSSYFLGWE YE NPYD++ NP+G+IQMGLAENQL FDL+ESWL N
Sbjct: 4 LSTKVTSNGHGQDSSYFLGWEEYEKNPYDEIKNPNGMIQMGLAENQLCFDLIESWLTKNP 63
Query: 62 EAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAA 121
+A LKRNG+S+FRELALFQDYHG P+ KK + + M IRGN+V FDP K+VL AGST+A
Sbjct: 64 DAASLKRNGQSIFRELALFQDYHGMPEFKKAMAEFMEEIRGNRVTFDPKKIVLAAGSTSA 123
Query: 122 NETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181
NETLMFCLA+PGDAFLLPTPYYPGFDRDLKWR G EIVPIHCSSSNGF+IT SAL+ AYQ
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQ 183
Query: 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241
QAQ L+LKVKGVL+TNPSNPLGTA+T +ELN L++F SK IH++SDEIYSGT+F
Sbjct: 184 QAQKLDLKVKGVLVTNPSNPLGTALTRRELNLLVDFITSKNIHLISDEIYSGTMFG--FE 241
Query: 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS 301
FIS+M+ + D+ ++++ ++ R+H+VYSLSKD +PGFRVG IYSN+E +VSAATKMSS
Sbjct: 242 QFISVMDVLKDKKLEDT-EVSKRVHVVYSLSKDLGLPGFRVGAIYSNDEMIVSAATKMSS 300
Query: 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFC 361
FGLVSSQTQYLLS +LSDKKFT Y++EN+KRL+ R+ LVSGL+ AGI CL+SNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTSQYLEENQKRLKSRQRRLVSGLESAGITCLRSNAGLFC 360
Query: 362 WVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVA 421
WVDMRHLL +NTFEAE +LWKKI++ V LNISPGSSCHC EPGWFR+CFAN++E+TL +A
Sbjct: 361 WVDMRHLLDTNTFEAELDLWKKIVYNVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLA 420
Query: 422 LQRIKVFAQSCNPQMLLLQ---------RRSIIGKWISKLSSSSSYDQEPD 463
L+R+K F +S + ++ + R+ + W+ ++S + D+ PD
Sbjct: 421 LKRLKTFVESTDCGRMISRSSHERLKSLRKKTVSNWVFRVSWT---DRVPD 468
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q43309|1A14_ARATH 1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 631 bits (1628), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/433 (69%), Positives = 353/433 (81%), Gaps = 4/433 (0%)
Query: 2 LSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQ 61
LSR A+C+SHGQ SSYFLGWE YE NPYD NP GIIQMGLAENQL FDLLESWLA N
Sbjct: 4 LSRKATCNSHGQVSSYFLGWEEYEKNPYDVTKNPQGIIQMGLAENQLCFDLLESWLAQNT 63
Query: 62 EAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAA 121
+A KR+G+S+FRELALFQDYHG K M+ RGN+V FD N LVLTAG+T+A
Sbjct: 64 DAACFKRDGQSVFRELALFQDYHGLSSFKNAFADFMSENRGNRVSFDSNNLVLTAGATSA 123
Query: 122 NETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181
NETLMFCLADPGDAFLLPTPYYPGFDRDLKWR GVEIVPI SS+NGFRIT ALE AY+
Sbjct: 124 NETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIQSSSTNGFRITKLALEEAYE 183
Query: 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINF-SKSKRIHIVSDEIYSGTVFDSPS 240
QA+ L+L VKG+LITNPSNPLGT T ELN L +F +K+K IH+VSDEIYSGTVF+ S
Sbjct: 184 QAKKLDLNVKGILITNPSNPLGTTTTQTELNILFDFITKNKNIHLVSDEIYSGTVFN--S 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
S FIS+ME ++ N E+ D+ +R+HIV SLSKD +PGFRVG IYSN++ V+SAATKMS
Sbjct: 242 SEFISVME-ILKNNQLENTDVLNRVHIVCSLSKDLGLPGFRVGAIYSNDKDVISAATKMS 300
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS +LSDKKFT NY++EN+KRL+ R+ LV GL+ GI+CLKSNAGLF
Sbjct: 301 SFGLVSSQTQYLLSSLLSDKKFTKNYLRENQKRLKNRQRKLVLGLEAIGIKCLKSNAGLF 360
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMR LL S TFEAE +LWKKI++EV LNISPGSSCHC EPGWFR+CFAN+ +ETL++
Sbjct: 361 CWVDMRPLLRSKTFEAEMDLWKKIVYEVKLNISPGSSCHCEEPGWFRVCFANMIDETLKL 420
Query: 421 ALQRIKVFAQSCN 433
AL+R+K+ N
Sbjct: 421 ALKRLKMLVDDEN 433
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q10DK7|1A11_ORYSJ 1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1526), Expect = e-168, Method: Compositional matrix adjust.
Identities = 277/435 (63%), Positives = 341/435 (78%), Gaps = 3/435 (0%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS+ A C+SHGQDSSYFLGW+ YE NP+D + NPSGIIQMGLAENQLSFDLLE WL N
Sbjct: 13 LLSKKAGCNSHGQDSSYFLGWQEYEKNPFDPVSNPSGIIQMGLAENQLSFDLLEEWLEKN 72
Query: 61 QEAVELKR--NGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGS 118
A+ L+R G S+FRELALFQDYHG P K L + M+ RG KV FDP+ +VLTAG+
Sbjct: 73 PHALGLRREGGGASVFRELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGA 132
Query: 119 TAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALEN 178
T+ANE LMFCLAD GDAFL+PTPYYPGFDRDLKWR G EIVP+HC+S+NGFR+T AL++
Sbjct: 133 TSANEALMFCLADHGDAFLIPTPYYPGFDRDLKWRTGAEIVPVHCASANGFRVTRPALDD 192
Query: 179 AYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238
AY++AQ L+VKGVLITNPSNPLGTA +L +++F +K IH++SDEIY+GT F
Sbjct: 193 AYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAE 252
Query: 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK 298
P + F+S +E V R+ D+ R+H+VYSLSKD +PGFRVG IYS N VVSAATK
Sbjct: 253 PPAGFVSALEVVAGRD-GGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATK 311
Query: 299 MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAG 358
MSSFGLVSSQTQYLL+ +L D+ FT +Y+ EN++R+++R + LV GL+ GI CL SNAG
Sbjct: 312 MSSFGLVSSQTQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAG 371
Query: 359 LFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETL 418
LFCWVDM HL+ S +F E ELWKK++FEVGLNISPGSSCHC EPGWFR+CFAN++ +TL
Sbjct: 372 LFCWVDMSHLMRSRSFAGEMELWKKVVFEVGLNISPGSSCHCREPGWFRVCFANMSAKTL 431
Query: 419 QVALQRIKVFAQSCN 433
VA+QR++ F S
Sbjct: 432 DVAMQRLRSFVDSAT 446
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|A2XLL2|1A11_ORYSI 1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 592 bits (1526), Expect = e-168, Method: Compositional matrix adjust.
Identities = 277/435 (63%), Positives = 341/435 (78%), Gaps = 3/435 (0%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS+ A C+SHGQDSSYFLGW+ YE NP+D + NPSGIIQMGLAENQLSFDLLE WL N
Sbjct: 13 LLSKKAGCNSHGQDSSYFLGWQEYEKNPFDPVSNPSGIIQMGLAENQLSFDLLEEWLEKN 72
Query: 61 QEAVELKR--NGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGS 118
A+ L+R G S+FRELALFQDYHG P K L + M+ RG KV FDP+ +VLTAG+
Sbjct: 73 PHALGLRREGGGASVFRELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGA 132
Query: 119 TAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALEN 178
T+ANE LMFCLAD GDAFL+PTPYYPGFDRDLKWR G EIVP+HC+S+NGFR+T AL++
Sbjct: 133 TSANEALMFCLADHGDAFLIPTPYYPGFDRDLKWRTGAEIVPVHCASANGFRVTRPALDD 192
Query: 179 AYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238
AY++AQ L+VKGVLITNPSNPLGTA +L +++F +K IH++SDEIY+GT F
Sbjct: 193 AYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAE 252
Query: 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK 298
P + F+S +E V R+ D+ R+H+VYSLSKD +PGFRVG IYS N VVSAATK
Sbjct: 253 PPAGFVSALEVVAGRD-GGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATK 311
Query: 299 MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAG 358
MSSFGLVSSQTQYLL+ +L D+ FT +Y+ EN++R+++R + LV GL+ GI CL SNAG
Sbjct: 312 MSSFGLVSSQTQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAG 371
Query: 359 LFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETL 418
LFCWVDM HL+ S +F E ELWKK++FEVGLNISPGSSCHC EPGWFR+CFAN++ +TL
Sbjct: 372 LFCWVDMSHLMRSRSFAGEMELWKKVVFEVGLNISPGSSCHCREPGWFRVCFANMSAKTL 431
Query: 419 QVALQRIKVFAQSCN 433
VA+QR++ F S
Sbjct: 432 DVAMQRLRSFVDSAT 446
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Oryza sativa subsp. indica (taxid: 39946) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| 225458928 | 467 | PREDICTED: 1-aminocyclopropane-1-carboxy | 0.987 | 0.980 | 0.723 | 0.0 | |
| 224067150 | 449 | 1-aminocyclopropane-1-carboxylate [Popul | 0.939 | 0.971 | 0.769 | 0.0 | |
| 147854110 | 490 | hypothetical protein VITISV_042484 [Viti | 0.976 | 0.924 | 0.722 | 0.0 | |
| 20152191 | 471 | 1-aminocyclopropane-1-carboxylate syntha | 0.987 | 0.972 | 0.701 | 0.0 | |
| 302142149 | 452 | unnamed protein product [Vitis vinifera] | 0.954 | 0.980 | 0.699 | 0.0 | |
| 225467508 | 469 | PREDICTED: 1-aminocyclopropane-1-carboxy | 0.969 | 0.959 | 0.722 | 0.0 | |
| 359497594 | 469 | PREDICTED: 1-aminocyclopropane-1-carboxy | 0.969 | 0.959 | 0.720 | 0.0 | |
| 224127212 | 468 | 1-aminocyclopropane-1-carboxylate [Popul | 0.987 | 0.978 | 0.680 | 0.0 | |
| 224097212 | 467 | 1-aminocyclopropane-1-carboxylate [Popul | 0.989 | 0.982 | 0.689 | 0.0 | |
| 169732565 | 472 | 1-aminocyclopropane-1-carboxylate syntha | 0.928 | 0.913 | 0.725 | 0.0 |
| >gi|225458928|ref|XP_002283512.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/473 (72%), Positives = 393/473 (83%), Gaps = 15/473 (3%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A D+HG+DSSYFLGW+ YE N YD + NP+GIIQMGLAENQLSFDLLESWLASN
Sbjct: 1 MLSRKARLDAHGEDSSYFLGWKEYEKNAYDDVQNPTGIIQMGLAENQLSFDLLESWLASN 60
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
Q+A L +NGES+FRELALFQDYHG PD K ELV+ MA IRGNKV FDP KLVL AG+T+
Sbjct: 61 QDAARLTKNGESVFRELALFQDYHGLPDFKNELVEFMAEIRGNKVNFDPRKLVLMAGATS 120
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFC+A+ GDAFLLPTPYYPGFDRDLKWR GVE+VPIHCSSSNGF++T ALE AY
Sbjct: 121 ANETLMFCIAESGDAFLLPTPYYPGFDRDLKWRTGVELVPIHCSSSNGFKVTKCALEEAY 180
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
QQA L+L VKGVLITNPSNPLGT M ELN LI+F+ +K+IHI+SDEIYSGTVFD P
Sbjct: 181 QQAHKLSLNVKGVLITNPSNPLGTTMGRDELNDLIDFAVAKKIHIISDEIYSGTVFDHP- 239
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
SFISIMEA+MDR + ++ DLWSR+HIVYSLSKD +PGFRVGMIYSNNE VVSAATKMS
Sbjct: 240 -SFISIMEALMDRKLQDT-DLWSRVHIVYSLSKDLGLPGFRVGMIYSNNETVVSAATKMS 297
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGL+SSQTQYLLS++LSDKKFT NY+KENRKRL+ R+EM+V+ L+ AGI CLKSNAGLF
Sbjct: 298 SFGLISSQTQYLLSKILSDKKFTRNYLKENRKRLKTRREMIVAALRNAGIGCLKSNAGLF 357
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTF+AE ELWK+I+ E GLNISPG+SCHC+EPGWFRICFAN++E+TL +
Sbjct: 358 CWVDMRHLLSSNTFDAEMELWKRILREAGLNISPGASCHCSEPGWFRICFANMSEDTLNL 417
Query: 421 ALQRIKVFA---QSCNPQMLLLQ------RRSIIGKWISKLSSSSSYDQEPDR 464
++QRIK A Q C + Q RR KW+ L SYD+EPDR
Sbjct: 418 SMQRIKALAERIQQCRRGRVTHQDSGCNSRRRSFSKWVLNL---CSYDREPDR 467
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224067150|ref|XP_002302380.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222844106|gb|EEE81653.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/439 (76%), Positives = 381/439 (86%), Gaps = 3/439 (0%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLS AS DSHGQDSSYFLGW+ YE NPY +HNPSGIIQMGLAENQLSFDL+ESW+A N
Sbjct: 1 MLSAKASHDSHGQDSSYFLGWQEYEKNPYHDVHNPSGIIQMGLAENQLSFDLIESWIARN 60
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+AV LK+NG S+F+ELALFQDYHG P K LVK MA IRGNKVKFDPNKLVLTAGST+
Sbjct: 61 PDAVGLKKNGASIFKELALFQDYHGLPAFKNALVKFMAEIRGNKVKFDPNKLVLTAGSTS 120
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+ GDAFL+PTPYYPGFDRDL+WR VEIVPIHCSSSN F+IT+ ALE +Y
Sbjct: 121 ANETLMFCLAERGDAFLVPTPYYPGFDRDLRWRTEVEIVPIHCSSSNDFQITMPALEKSY 180
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+AQ L+LKVKGVLITNPSNPLGT MT ELNHLI+F +K IHIVSDEIYSGTVFD P
Sbjct: 181 QEAQRLDLKVKGVLITNPSNPLGTTMTRDELNHLISFCTAKNIHIVSDEIYSGTVFDCP- 239
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
FISI EA+MDR++ E+ D+WSRIH+VYSLSKD +PGFRVGMIYSNNE +VSAATKMS
Sbjct: 240 -KFISITEALMDRHL-ENTDIWSRIHVVYSLSKDLGLPGFRVGMIYSNNETLVSAATKMS 297
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGL+SSQTQYLLS MLS+ KFT NYM++N KRLRKRKEMLVSGL+ AGI+CLKSNAGLF
Sbjct: 298 SFGLISSQTQYLLSGMLSESKFTNNYMEKNSKRLRKRKEMLVSGLQSAGIKCLKSNAGLF 357
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL S TFEAEKELWKKI+F+VGLNI PGSSCHC+EPGWFRICFAN++E TL+V
Sbjct: 358 CWVDMRHLLSSQTFEAEKELWKKILFDVGLNIPPGSSCHCSEPGWFRICFANLSEGTLKV 417
Query: 421 ALQRIKVFAQSCNPQMLLL 439
A++RIK F + +M L
Sbjct: 418 AMKRIKNFVDNNYQEMQTL 436
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147854110|emb|CAN82363.1| hypothetical protein VITISV_042484 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/468 (72%), Positives = 389/468 (83%), Gaps = 15/468 (3%)
Query: 6 ASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVE 65
A D+HG+DSSYFLGW+ YENN YD + NP+GIIQMGLAENQLSFDLLESWLASNQ+A
Sbjct: 29 ARLDAHGEDSSYFLGWKEYENNAYDDVQNPTGIIQMGLAENQLSFDLLESWLASNQDAAR 88
Query: 66 LKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETL 125
L +NGES+FRELALFQDYHG PD K ELV+ MA IRGNKV FDP KLVL AG+T+ANETL
Sbjct: 89 LTKNGESVFRELALFQDYHGLPDFKNELVEFMAEIRGNKVNFDPRKLVLMAGATSANETL 148
Query: 126 MFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185
MFC+A+ GDAFLLPTPYYPGFDRDLKWR GVE+VPIHCSSSNGF++T ALE AYQQA
Sbjct: 149 MFCIAESGDAFLLPTPYYPGFDRDLKWRTGVELVPIHCSSSNGFKVTKCALEEAYQQAHK 208
Query: 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245
L+L VKGVLITNPSNPLGT M ELN LI+F+ +K+IHI+SDEIYSGTVFD P SFIS
Sbjct: 209 LSLNVKGVLITNPSNPLGTTMGRDELNDLIDFAVAKKIHIISDEIYSGTVFDHP--SFIS 266
Query: 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLV 305
IMEA+MDR + ++ DLWSR+HIVYSLSKD +PGFRVGMIYSNNE VVSAATKMSSFGL+
Sbjct: 267 IMEALMDRKLXDT-DLWSRVHIVYSLSKDLGLPGFRVGMIYSNNETVVSAATKMSSFGLI 325
Query: 306 SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDM 365
SSQTQYLLS++LSDKKFT NY+KENRKRL+ R+EM+V+ L+ AGI CLKSNAGLFCWVDM
Sbjct: 326 SSQTQYLLSKILSDKKFTRNYLKENRKRLKTRREMIVAALRNAGIGCLKSNAGLFCWVDM 385
Query: 366 RHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRI 425
RHLL SNTF+AE ELWK+I+ E GLNISPG+SCHC+EPGWFR CFAN++E+TL +++QRI
Sbjct: 386 RHLLSSNTFDAEMELWKRILREAGLNISPGASCHCSEPGWFRXCFANMSEDTLNLSMQRI 445
Query: 426 KVFA---QSCNPQMLLLQ------RRSIIGKWISKLSSSSSYDQEPDR 464
K A Q C + Q RR KW+ L SYD+EPDR
Sbjct: 446 KALAERIQQCRRGRVTHQDSGCNSRRRSFSKWVLNL---CSYDREPDR 490
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20152191|dbj|BAB89348.1| 1-aminocyclopropane-1-carboxylate synthase [Diospyros kaki] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/472 (70%), Positives = 386/472 (81%), Gaps = 14/472 (2%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LSR A+C++HGQDSSYFLGW+ YE NPYD+ HNP+GIIQMGLAENQLSFDLLESWLASN
Sbjct: 3 LLSRKAACNTHGQDSSYFLGWQEYEKNPYDESHNPTGIIQMGLAENQLSFDLLESWLASN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KR+G+S+FRELALFQDYHG PD KK LV+ M+ IRGNKV FDP KLVLTAG+T+
Sbjct: 63 PDAAGFKRDGQSIFRELALFQDYHGLPDFKKALVEFMSEIRGNKVSFDPKKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLADPG+AFLLPTPYYPGFDRDLKWR GVEIVPI C+SSNGFRIT SALE AY
Sbjct: 123 ANETLMFCLADPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIKCTSSNGFRITESALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q A NLKVKGVL+TNPSNPLGT ++ ELN L++F K IH++SDEIYSGTVF SP
Sbjct: 183 QAAGKRNLKVKGVLVTNPSNPLGTTLSRHELNLLLSFVTEKGIHLISDEIYSGTVFSSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S+ME +MD+ + ++W R+HIVYSLSKD +PGFRVG IYSN++ VV AATKMS
Sbjct: 242 -GFLSVMEILMDKKYSMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVEAATKMS 300
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKF NY+ EN+KRLR R+EML+SGL+ AGIRCLKSNAGLF
Sbjct: 301 SFGLVSSQTQYLLSAMLSDKKFRKNYISENQKRLRHRQEMLISGLESAGIRCLKSNAGLF 360
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL S TF+AE ELWKKI+++VGLNISPGSSCHC+EPGWFR+CFAN++ TL +
Sbjct: 361 CWVDMRHLLSSETFDAEMELWKKIVYDVGLNISPGSSCHCDEPGWFRVCFANMSAATLNL 420
Query: 421 ALQRIKVFAQSCNP---------QMLLLQRRSIIGKWISKLSSSSSYDQEPD 463
A+QRIK+F QS Q L RR + KW+ +LS +EPD
Sbjct: 421 AIQRIKLFVQSTAAGSKQNQSYHQSLNNSRRKSLTKWVFRLSFDG---REPD 469
|
Source: Diospyros kaki Species: Diospyros kaki Genus: Diospyros Family: Ebenaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142149|emb|CBI19352.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/473 (69%), Positives = 380/473 (80%), Gaps = 30/473 (6%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A D+HG+DSSYFLGW+ YE N YD + NP+GIIQMGLAENQLSFDLLESWLASN
Sbjct: 1 MLSRKARLDAHGEDSSYFLGWKEYEKNAYDDVQNPTGIIQMGLAENQLSFDLLESWLASN 60
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
Q+A L +NGES+FRELALFQDYHG PD K ELV+ MA IRGNKV FDP KLVL AG+T+
Sbjct: 61 QDAARLTKNGESVFRELALFQDYHGLPDFKNELVEFMAEIRGNKVNFDPRKLVLMAGATS 120
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFC+A+ GDAFLLPTPYYPGFDRDLKWR GVE+VPIHCSSSNGF++T ALE AY
Sbjct: 121 ANETLMFCIAESGDAFLLPTPYYPGFDRDLKWRTGVELVPIHCSSSNGFKVTKCALEEAY 180
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
QQA L+L VKGVLITNPSNPLGT M ELN LI+F+ +K+IHI+SDEIYSGTVFD P+
Sbjct: 181 QQAHKLSLNVKGVLITNPSNPLGTTMGRDELNDLIDFAVAKKIHIISDEIYSGTVFDHPN 240
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
+ DLWSR+HIVYSLSKD +PGFRVGMIYSNNE VVSAATKMS
Sbjct: 241 T------------------DLWSRVHIVYSLSKDLGLPGFRVGMIYSNNETVVSAATKMS 282
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGL+SSQTQYLLS++LSDKKFT NY+KENRKRL+ R+EM+V+ L+ AGI CLKSNAGLF
Sbjct: 283 SFGLISSQTQYLLSKILSDKKFTRNYLKENRKRLKTRREMIVAALRNAGIGCLKSNAGLF 342
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTF+AE ELWK+I+ E GLNISPG+SCHC+EPGWFRICFAN++E+TL +
Sbjct: 343 CWVDMRHLLSSNTFDAEMELWKRILREAGLNISPGASCHCSEPGWFRICFANMSEDTLNL 402
Query: 421 ALQRIKVFA---QSCNPQMLLLQ------RRSIIGKWISKLSSSSSYDQEPDR 464
++QRIK A Q C + Q RR KW+ L SYD+EPDR
Sbjct: 403 SMQRIKALAERIQQCRRGRVTHQDSGCNSRRRSFSKWVLNL---CSYDREPDR 452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225467508|ref|XP_002269780.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3 [Vitis vinifera] gi|147801368|emb|CAN74730.1| hypothetical protein VITISV_037836 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/461 (72%), Positives = 378/461 (81%), Gaps = 11/461 (2%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A+ +SHGQDS YFLGWE YE N Y ++ NPSGIIQMGLAENQLSFDLLESWLA N
Sbjct: 3 MLSRKATFNSHGQDSEYFLGWEEYEKNAYHEVENPSGIIQMGLAENQLSFDLLESWLAQN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KR+GES+FRELALFQDYHG P KK LV+ M+ IRGNKV FD NKLVLTAG+T+
Sbjct: 63 PDAAGFKRDGESIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVSFDQNKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+PG+AFLLPTPYYPGFDRDLKWR GVEIVPI CSSSNGF+IT SALE AY
Sbjct: 123 ANETLMFCLANPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCSSSNGFQITESALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
QQAQ +LKVKGVLITNPSNPLGT + ELN L+NF +K IH++SDEIYSGTVFDSP
Sbjct: 183 QQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+SIME +MDRN + ++W R+HIVYSLSKD +PGFRVG IYSN+ VVSAATKMS
Sbjct: 242 -GFVSIMEVLMDRNYMNT-EVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKFT NY+ EN+KRL++R +ML+SGL+ AGI CLKSNAGLF
Sbjct: 300 SFGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNAGIDCLKSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI+++V LNISPGSSCHC EPGWFR+CFAN++E+TL +
Sbjct: 360 CWVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNL 419
Query: 421 ALQRIKVFAQSCNP--------QMLLLQRRSIIGKWISKLS 453
ALQRIK F S Q QRR KW+ +LS
Sbjct: 420 ALQRIKAFVDSSTTTNNNQSRHQSNKNQRRKSFTKWVFRLS 460
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497594|ref|XP_003635576.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/461 (72%), Positives = 377/461 (81%), Gaps = 11/461 (2%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A+ +SHGQDS YFLGWE YE N Y ++ NPSGIIQMGLAENQLSFDLLESWLA N
Sbjct: 3 MLSRKATFNSHGQDSEYFLGWEEYEKNAYHEVENPSGIIQMGLAENQLSFDLLESWLAQN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KR+GES+FRELALFQDYHG P KK LV+ M+ IRGNKV FD NKLVLTAG+T+
Sbjct: 63 PDAAGFKRDGESIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVSFDQNKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+PG+AFLLPTPYYPGFDRDLKWR GVEIVPI CSSSNGF+IT SALE AY
Sbjct: 123 ANETLMFCLANPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCSSSNGFQITESALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
QQAQ +LKVKGVLITNPSNPLGT + ELN L+NF +K IH++SDEIYSGTVFDSP
Sbjct: 183 QQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+SIME +MDRN + ++W R+HIVYSLSKD +PGFRVG IYSN+ VVSAATKMS
Sbjct: 242 -GFVSIMEVLMDRNYMNT-EVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKFT NY+ EN+KRL++R +ML+SGL+ GI CLKSNAGLF
Sbjct: 300 SFGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNTGIDCLKSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI+++V LNISPGSSCHC EPGWFR+CFAN++E+TL +
Sbjct: 360 CWVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNL 419
Query: 421 ALQRIKVFAQSCNP--------QMLLLQRRSIIGKWISKLS 453
ALQRIK F S Q QRR KW+ +LS
Sbjct: 420 ALQRIKAFVDSSTTTNNNQSRHQSNKNQRRKSFTKWVFRLS 460
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127212|ref|XP_002320015.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222860788|gb|EEE98330.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/469 (68%), Positives = 391/469 (83%), Gaps = 11/469 (2%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LSR A+C++HGQDSSYFLGW+ YE NPYD++ NP+GIIQMGLAENQLSFDLLESWLA+N
Sbjct: 3 LLSRKATCNTHGQDSSYFLGWQEYEKNPYDEIKNPTGIIQMGLAENQLSFDLLESWLANN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
Q+A K++G+S+FRELALFQDYHG P KK LV+ MA IRGNKV FD NK+VLTAG+T+
Sbjct: 63 QDAAGFKKDGQSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVTFDQNKIVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+PG+AFLLPTPYYPGFDRDLKWR GVEIVPI C+SSNGF+IT ALE+A+
Sbjct: 123 ANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSSNGFQITAPALEDAF 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+AQ NL+VKGVL+TNPSNPLGT +T ELN L++ K IH++SDEIYSGTVF+SP
Sbjct: 183 QEAQKRNLRVKGVLVTNPSNPLGTTITRSELNLLLSLITEKGIHLISDEIYSGTVFNSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S+ME + D ES +W+R+H+VYSLSKD +PGFRVG IYSN++ VVSAATKMS
Sbjct: 242 -GFVSVMEVLKDMKC-ESSQVWNRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLL+ +LSDKKFT NY+ EN+KRL++R+++LV GL+ AGI CLKSNAGLF
Sbjct: 300 SFGLVSSQTQYLLAALLSDKKFTRNYISENQKRLKQRQKLLVKGLEKAGISCLKSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWV+M+HLL SNTF+AE ELWKKI+ +V LNISPGSSCHC EPGWFR+CFAN++EETL +
Sbjct: 360 CWVNMKHLLSSNTFDAEMELWKKIVHQVKLNISPGSSCHCTEPGWFRVCFANMSEETLNL 419
Query: 421 ALQRIKVFAQSCN------PQMLLLQRRSIIGKWISKLSSSSSYDQEPD 463
A+QR+K F +S N Q+L RR + KW+ +L S +D+EP+
Sbjct: 420 AIQRLKSFVESMNINNQSHHQLLKNARRKSLAKWVLRL--SFDHDREPE 466
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097212|ref|XP_002310878.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222853781|gb|EEE91328.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/467 (68%), Positives = 387/467 (82%), Gaps = 8/467 (1%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LSR A+C++HGQDSSYFLGW+ YE NPYD++ NP+GIIQMGLAENQLSFDLLESWLA N
Sbjct: 3 LLSRKATCNTHGQDSSYFLGWQEYEKNPYDEIKNPTGIIQMGLAENQLSFDLLESWLAKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
A K++G+S+FRELALFQDYHG P+ KK LV+ MA IRGNKV+FD NK+VLTAG+T+
Sbjct: 63 PGAAGFKKDGQSIFRELALFQDYHGLPEFKKALVEFMAEIRGNKVRFDQNKIVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+PG+AFLLPTPYYPGFDRDLKWR GVEIVPI C+SSNGF+IT ALE A+
Sbjct: 123 ANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSSNGFQITAPALEEAF 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+AQ NL+VKGVL+TNPSNPLGT MT ELN L++F K IH++SDEIYSGTVF SP
Sbjct: 183 QEAQKRNLRVKGVLVTNPSNPLGTTMTGNELNLLLSFVTEKGIHLISDEIYSGTVFSSPG 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+SI+E + DR E+ +W+R+HIVYSLSKD +PGFRVG IYSN++ VVSAATKMS
Sbjct: 243 --FVSILEVLKDRKC-ENSQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS +LSDKKFT NY+ EN+KRL++R+++LV GL+ AGI CLKSNAGLF
Sbjct: 300 SFGLVSSQTQYLLSALLSDKKFTRNYISENQKRLKQRQKLLVKGLEKAGISCLKSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWV+M+HLL SNTF E ELWKKI+ EV LNISPGSSCHC EPGWFR+CFAN++EETL +
Sbjct: 360 CWVNMKHLLSSNTFTEEMELWKKIVHEVKLNISPGSSCHCTEPGWFRVCFANMSEETLNL 419
Query: 421 ALQRIKVFAQS----CNPQMLLLQRRSIIGKWISKLSSSSSYDQEPD 463
A+QR+K F +S + QML RR + KW+ +LS + +EPD
Sbjct: 420 AIQRLKSFVESMKNQSHHQMLKSSRRKFLTKWVFRLSFDHDH-REPD 465
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|169732565|gb|ABL67952.2| 1-aminocyclopropane-1-carboxylate synthase [Ipomoea nil] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/433 (72%), Positives = 367/433 (84%), Gaps = 2/433 (0%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS +C+SHGQDSSYFLGWE YE NPYD++ NP+G+IQMGLAENQLSFD LE+WLA N
Sbjct: 3 LLSEKVTCNSHGQDSSYFLGWEEYEKNPYDEVKNPNGMIQMGLAENQLSFDQLETWLAQN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A ++++GES+FR+LALFQDYHG P K LV+ M+ IRGNKV FD NKLVLTAG+T+
Sbjct: 63 PDAAAMRKDGESIFRQLALFQDYHGLPSFKNALVQFMSEIRGNKVTFDSNKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLAD GDAFLLPTPYYPGFDRDLKWR G EIVPI C SSNGFRIT SA+E AY
Sbjct: 123 ANETLMFCLADRGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCWSSNGFRITESAIEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+AQ NLKVKGVL+TNPSNPLGT +T QELN L+ F KRIH++SDEIYSGTVFDSP
Sbjct: 183 QEAQKRNLKVKGVLVTNPSNPLGTTLTRQELNLLLTFIDEKRIHLISDEIYSGTVFDSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S ME + +R ++DD+W+R+HIVYSLSKD +PGFRVG IYSN++ VV+AATKMS
Sbjct: 242 -GFVSAMEVLTERGYAKTDDVWNRVHIVYSLSKDLGLPGFRVGAIYSNDQTVVAAATKMS 300
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKFT Y+ +N+KRL+KR +MLV+GL AGIRCL+SNAGLF
Sbjct: 301 SFGLVSSQTQYLLSAMLSDKKFTKKYVAKNQKRLKKRHDMLVNGLGGAGIRCLESNAGLF 360
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI+++VGLNISPGSSCHC EPGWFR CFAN++E+TL +
Sbjct: 361 CWVDMRHLLSSNTFEAEMELWKKIVYQVGLNISPGSSCHCTEPGWFRACFANMSEDTLNL 420
Query: 421 ALQRIKVFAQSCN 433
A+QRIK F N
Sbjct: 421 AMQRIKAFVVKSN 433
|
Source: Ipomoea nil Species: Ipomoea nil Genus: Ipomoea Family: Convolvulaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| UNIPROTKB|Q8S935 | 471 | DK-ACS1 "1-aminocyclopropane-1 | 0.924 | 0.910 | 0.719 | 4.4e-171 | |
| UNIPROTKB|A5BL65 | 469 | VITISV_037836 "Putative unchar | 0.922 | 0.912 | 0.735 | 1.7e-169 | |
| TAIR|locus:2137579 | 469 | ACS8 "1-amino-cyclopropane-1-c | 0.928 | 0.918 | 0.707 | 1.5e-168 | |
| UNIPROTKB|Q9SXN8 | 473 | pPPACS1 "1-aminocyclopropane-1 | 0.918 | 0.900 | 0.705 | 1.2e-166 | |
| UNIPROTKB|P37821 | 473 | ACS-1 "1-aminocyclopropane-1-c | 0.918 | 0.900 | 0.703 | 4.2e-166 | |
| UNIPROTKB|Q09PK3 | 481 | ACS1 "1-aminocyclopropane-1-ca | 0.920 | 0.887 | 0.7 | 5.4e-166 | |
| UNIPROTKB|Q43165 | 465 | ST ACS1A "Amino cyclopropane c | 0.922 | 0.920 | 0.693 | 5.4e-166 | |
| UNIPROTKB|O65028 | 470 | ACS2 "Pollen-specific 1-aminoc | 0.922 | 0.910 | 0.703 | 8.7e-166 | |
| UNIPROTKB|O80334 | 467 | O80334 "1-aminocyclopropane-1- | 0.924 | 0.918 | 0.690 | 1.4e-165 | |
| UNIPROTKB|Q00257 | 475 | ACS2 "1-aminocyclopropane-1-ca | 0.915 | 0.894 | 0.705 | 1.8e-165 |
| UNIPROTKB|Q8S935 DK-ACS1 "1-aminocyclopropane-1-carboxylate synthase" [Diospyros kaki (taxid:35925)] | Back alignment and assigned GO terms |
|---|
Score = 1663 (590.5 bits), Expect = 4.4e-171, P = 4.4e-171
Identities = 310/431 (71%), Positives = 358/431 (83%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LSR A+C++HGQDSSYFLGW+ YE NPYD+ HNP+GIIQMGLAENQLSFDLLESWLASN
Sbjct: 3 LLSRKAACNTHGQDSSYFLGWQEYEKNPYDESHNPTGIIQMGLAENQLSFDLLESWLASN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KR+G+S+FRELALFQDYHG PD KK LV+ M+ IRGNKV FDP KLVLTAG+T+
Sbjct: 63 PDAAGFKRDGQSIFRELALFQDYHGLPDFKKALVEFMSEIRGNKVSFDPKKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLADPG+AFLLPTPYYPGFDRDLKWR GVEIVPI C+SSNGFRIT SALE AY
Sbjct: 123 ANETLMFCLADPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIKCTSSNGFRITESALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q A NLKVKGVL+TNPSNPLGT ++ ELN L++F K IH++SDEIYSGTVF SP
Sbjct: 183 QAAGKRNLKVKGVLVTNPSNPLGTTLSRHELNLLLSFVTEKGIHLISDEIYSGTVFSSPG 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S+ME +MD+ + ++W R+HIVYSLSKD +PGFRVG IYSN++ VV AATKMS
Sbjct: 243 --FLSVMEILMDKKYSMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVEAATKMS 300
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKF NY +SGL+ AGIRCLKSNAGLF
Sbjct: 301 SFGLVSSQTQYLLSAMLSDKKFRKNYISENQKRLRHRQEMLISGLESAGIRCLKSNAGLF 360
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL S TF+AE ELWKKI+++VGLNISPGSSCHC+EPGWFR+CFAN++ TL +
Sbjct: 361 CWVDMRHLLSSETFDAEMELWKKIVYDVGLNISPGSSCHCDEPGWFRVCFANMSAATLNL 420
Query: 421 ALQRIKVFAQS 431
A+QRIK+F QS
Sbjct: 421 AIQRIKLFVQS 431
|
|
| UNIPROTKB|A5BL65 VITISV_037836 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)] | Back alignment and assigned GO terms |
|---|
Score = 1648 (585.2 bits), Expect = 1.7e-169, P = 1.7e-169
Identities = 317/431 (73%), Positives = 355/431 (82%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A+ +SHGQDS YFLGWE YE N Y ++ NPSGIIQMGLAENQLSFDLLESWLA N
Sbjct: 3 MLSRKATFNSHGQDSEYFLGWEEYEKNAYHEVENPSGIIQMGLAENQLSFDLLESWLAQN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KR+GES+FRELALFQDYHG P KK LV+ M+ IRGNKV FD NKLVLTAG+T+
Sbjct: 63 PDAAGFKRDGESIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVSFDQNKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+PG+AFLLPTPYYPGFDRDLKWR GVEIVPI CSSSNGF+IT SALE AY
Sbjct: 123 ANETLMFCLANPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCSSSNGFQITESALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
QQAQ +LKVKGVLITNPSNPLGT + ELN L+NF +K IH++SDEIYSGTVFDSP
Sbjct: 183 QQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDSPG 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+SIME +MDRN ++ +W R+HIVYSLSKD +PGFRVG IYSN+ VVSAATKMS
Sbjct: 243 --FVSIMEVLMDRNYMNTE-VWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKFT NY +SGL+ AGI CLKSNAGLF
Sbjct: 300 SFGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNAGIDCLKSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI+++V LNISPGSSCHC EPGWFR+CFAN++E+TL +
Sbjct: 360 CWVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNL 419
Query: 421 ALQRIKVFAQS 431
ALQRIK F S
Sbjct: 420 ALQRIKAFVDS 430
|
|
| TAIR|locus:2137579 ACS8 "1-amino-cyclopropane-1-carboxylate synthase 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1639 (582.0 bits), Expect = 1.5e-168, P = 1.5e-168
Identities = 307/434 (70%), Positives = 353/434 (81%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS+ ASC++HGQDSSYF GWE YE NPYD++ NP GIIQMGLAENQLSFDL+ESWLA N
Sbjct: 3 LLSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLAKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A +R G+S+FRELALFQDYHG P K + M+ RGN+V F+PNKLVLTAG+T
Sbjct: 63 PDAANFQREGQSIFRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGATP 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR G EIVPI C S+NGFRIT ALE AY
Sbjct: 123 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCKSANGFRITKVALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
+QAQ LNLKVKGVLITNPSNPLGT T ELNHL++F K+IH++SDEIYSGTVF +P
Sbjct: 183 EQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTNPG 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
FIS+ME + DR + E+ D++ R+HIVYSLSKD +PGFRVG+IYSN++ VVSAATKMS
Sbjct: 243 --FISVMEVLKDRKL-ENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGL+SSQTQYLLS +LSDK FT NY VSGL+ AGI CLKSNAGLF
Sbjct: 300 SFGLISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI++EV LNISPGSSCHCNEPGWFR+CFAN++EETL+V
Sbjct: 360 CWVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKV 419
Query: 421 ALQRIKVFAQSCNP 434
AL R+K F +P
Sbjct: 420 ALDRLKRFVDGPSP 433
|
|
| UNIPROTKB|Q9SXN8 pPPACS1 "1-aminocyclopropane-1-carboxylic acid synthase" [Pyrus pyrifolia (taxid:3767)] | Back alignment and assigned GO terms |
|---|
Score = 1621 (575.7 bits), Expect = 1.2e-166, P = 1.2e-166
Identities = 302/428 (70%), Positives = 349/428 (81%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A+ +SHGQDSSYFLGW+ YE NPY ++HN +GIIQMGLAENQL FDLLESWLA N
Sbjct: 3 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
EA K+NGES+F ELALFQDYHG P KK +V MA IRGNKV FDPN LVLTAG+T+
Sbjct: 63 PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANET +FCLADPG+AFL+PTPYYPGFDRDLKWR GVEIVPIHC++SNGF+IT +ALE AY
Sbjct: 123 ANETFIFCLADPGEAFLIPTPYYPGFDRDLKWRTGVEIVPIHCTNSNGFQITETALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+A+ NL+VKGVL+TNPSNPLGT MT EL L++F + K IH++SDEIYSGT F SPS
Sbjct: 183 QEAEKCNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
FIS+ME + DRN DE+ ++W R+H+VYSLSKD +PGFRVG IYSN++ VV+AATKMS
Sbjct: 243 --FISVMEVLKDRNCDENFEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQ+LLS MLSDKK T NY VSGL+ AGI CL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKNLVSGLQKAGISCLNGNAGLF 360
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI++EV LNISPGSSCHC EPGWFR+CFAN+ E TL +
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 421 ALQRIKVF 428
A+QR+K F
Sbjct: 421 AMQRLKAF 428
|
|
| UNIPROTKB|P37821 ACS-1 "1-aminocyclopropane-1-carboxylate synthase" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
Identities = 301/428 (70%), Positives = 348/428 (81%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A+ +SHGQDSSYFLGW+ YE NPY ++HN +GIIQMGLAENQL FDLLESWLA N
Sbjct: 3 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
EA K+NGES+F ELALFQDYHG P KK +V MA IRGNKV FDPN LVLTAG+T+
Sbjct: 63 PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANET +FCLADPG+A L+PTPYYPGFDRDLKWR GVEIVPIHC+SSNGF+IT +ALE AY
Sbjct: 123 ANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+A+ NL+VKGVL+TNPSNPLGT MT EL L++F + K IH++SDEIYSGT F SPS
Sbjct: 183 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
FIS+ME + DRN DE+ ++W R+H+VYSLSKD +PGFRVG IYSN++ VV+AATKMS
Sbjct: 243 --FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQ+LLS MLSDKK T NY VSGL+ +GI CL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI++EV LNISPGSSCHC EPGWFR+CFAN+ E TL +
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 421 ALQRIKVF 428
A+QR+K F
Sbjct: 421 AMQRLKAF 428
|
|
| UNIPROTKB|Q09PK3 ACS1 "1-aminocyclopropane-1-carboxylate synthase" [Cucumis sativus (taxid:3659)] | Back alignment and assigned GO terms |
|---|
Score = 1615 (573.6 bits), Expect = 5.4e-166, P = 5.4e-166
Identities = 301/430 (70%), Positives = 355/430 (82%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLS A+C+SHGQDSSYFLGWEAYE NP+D+ NP+GIIQMGLAENQLSFDLLESWL N
Sbjct: 3 MLSTKATCNSHGQDSSYFLGWEAYEKNPFDETSNPNGIIQMGLAENQLSFDLLESWLTKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KR+G+S+FRELALFQDYHG P KK LV+ MA IRGNKV F+ N +VLTAG+T+
Sbjct: 63 PDAASFKRDGKSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVTFEANNIVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+ GDAFLLPTPYYPGFDRDLKWR GVEIVPIHC+SSNGF++T ALE AY
Sbjct: 123 ANETLMFCLAEAGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQVTQPALEQAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+AQ NL+VKGVL+TNPSNPLGT MT EL+ + +F SK IH++SDEIYSGTVF SP
Sbjct: 183 QEAQARNLRVKGVLVTNPSNPLGTTMTRNELDLVFDFITSKGIHLISDEIYSGTVFGSPG 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S ME + +R+ +E +++W R+HIVYSLSKD +PGFRVG IYSN+E VV+AATKMS
Sbjct: 243 --FVSAMEVLKERS-NEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVAAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKFT Y VSGL+ AGI+CL+SNAGLF
Sbjct: 300 SFGLVSSQTQYLLSAMLSDKKFTRTYISENQKRLKQRQKMLVSGLEKAGIKCLESNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL S+TFE E +LWKKI++EVGLNISPGSSCHC EPGWFR+CFAN+++ TL++
Sbjct: 360 CWVDMRHLLESDTFECELKLWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSQSTLKL 419
Query: 421 ALQRIKVFAQ 430
A++R+K F Q
Sbjct: 420 AIRRLKSFVQ 429
|
|
| UNIPROTKB|Q43165 ST ACS1A "Amino cyclopropane carboxylate acid synthase" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 1615 (573.6 bits), Expect = 5.4e-166, P = 5.4e-166
Identities = 299/431 (69%), Positives = 350/431 (81%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS+ A C+SHGQDSSYFLGWE YE NPYD+ NP GIIQMGLAENQLSFDLLESWL N
Sbjct: 3 LLSKKAMCNSHGQDSSYFLGWEEYEKNPYDETRNPKGIIQMGLAENQLSFDLLESWLTQN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KRNG S+FRELALFQDYHG P K LV+ M+ IRGNKV FD NKLVLTAG+T+
Sbjct: 63 PDAAAFKRNGNSIFRELALFQDYHGLPAFKDALVQFMSEIRGNKVSFDSNKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR G EIVPI C+SSNGFRIT SALE AY
Sbjct: 123 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCTSSNGFRITESALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
++A+ NL+VKGVL+TNPSNPLG+ +T +EL L+ F +K+IH++SDEIYSGTVF+SP
Sbjct: 183 KEAERRNLRVKGVLVTNPSNPLGSTLTKKELQLLLTFVSTKQIHLISDEIYSGTVFNSPK 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S+ME +++ N ++ +W R+HIVYSLSKD +PGFRVG IYSN++ +VSAATKMS
Sbjct: 243 --FVSVMEVLIENNYMYTE-VWDRVHIVYSLSKDLGLPGFRVGAIYSNDDMIVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGL+SSQTQYLLS +LSD+KF NY V GLK GIRCL+SNAGLF
Sbjct: 300 SFGLISSQTQYLLSALLSDQKFMKNYVSENQKRLKKRHEMLVGGLKQIGIRCLESNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTF+ E ELWKKI++EVGLNISPGSSCHC EPGWFR CFAN++E+TL +
Sbjct: 360 CWVDMRHLLSSNTFDGEMELWKKIVYEVGLNISPGSSCHCTEPGWFRACFANMSEDTLNI 419
Query: 421 ALQRIKVFAQS 431
A+QR+K F S
Sbjct: 420 AIQRLKAFVDS 430
|
|
| UNIPROTKB|O65028 ACS2 "Pollen-specific 1-aminocyclopropane-1-carboxylate synthase" [Petunia x hybrida (taxid:4102)] | Back alignment and assigned GO terms |
|---|
Score = 1613 (572.9 bits), Expect = 8.7e-166, P = 8.7e-166
Identities = 303/431 (70%), Positives = 354/431 (82%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS A+C+SHGQDSSYFLGW+ YE NPYD++ NP GIIQMGLAENQLSFDLLESWL+ N
Sbjct: 3 LLSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLSQN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KRNGES+FRELALFQDYHG P K LVK MA IRGNKV FD NKLVLTAG+T+
Sbjct: 63 PDAAGFKRNGESIFRELALFQDYHGLPAFKNALVKFMAEIRGNKVTFDSNKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLAD GDAFLLPTPYYPGFDRDLKWR G EIVPI C+SSNGFRIT SALE AY
Sbjct: 123 ANETLMFCLADRGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCTSSNGFRITESALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+A++ NL+VKGVL+TNPSNPLGT +T EL L++F +K IH++SDEIYSGTVF+SP+
Sbjct: 183 QEAKSRNLRVKGVLVTNPSNPLGTTLTRNELELLLSFVDTKGIHLISDEIYSGTVFNSPN 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S+ME +++ + ++ +W R+HIVYSLSKD +PGFRVG IYSN+E VVSAATKMS
Sbjct: 243 --FVSVMEVLIENDYMYTE-VWDRVHIVYSLSKDLGLPGFRVGAIYSNDELVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGL+SSQTQYLLS MLSDKKF Y V+GL+ AGI CL+SNAGLF
Sbjct: 300 SFGLISSQTQYLLSAMLSDKKFRKKYVSENQKRLKKRHAMLVTGLQNAGISCLESNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWK+I+++VGLNISPGSSCHC EPGWFR+CFAN++E+TL +
Sbjct: 360 CWVDMRHLLKSNTFEAEIELWKEIVYQVGLNISPGSSCHCTEPGWFRVCFANMSEDTLTL 419
Query: 421 ALQRIKVFAQS 431
A+ RIK F S
Sbjct: 420 AMARIKSFVDS 430
|
|
| UNIPROTKB|O80334 O80334 "1-aminocyclopropane-1-carboxylate synthase" [Actinidia deliciosa (taxid:3627)] | Back alignment and assigned GO terms |
|---|
Score = 1611 (572.2 bits), Expect = 1.4e-165, P = 1.4e-165
Identities = 299/433 (69%), Positives = 355/433 (81%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LSR A+C+SHGQDSSYFLGW+ YE PYD++ NP+GIIQMGLAENQLSFDLLESWLA+N
Sbjct: 3 LLSRKAACNSHGQDSSYFLGWQEYEKKPYDEVRNPTGIIQMGLAENQLSFDLLESWLANN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
E R+G+S+FRELALFQDYHG P K +V M+ IRGNKV FDP KLVLTAG+T+
Sbjct: 63 PEPAGFMRDGQSIFRELALFQDYHGLPAFKNAMVDFMSEIRGNKVSFDPKKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+PG+AFLLPTPYYPGFDRDL+WR GVEIVPIHC+S+N F+IT SALE AY
Sbjct: 123 ANETLMFCLAEPGEAFLLPTPYYPGFDRDLQWRTGVEIVPIHCTSANSFQITDSALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q AQ NL+VKGVL+TNPSNPLGT +T ELN L+ F SK IH++SDEIYSGTVF SP
Sbjct: 183 QSAQKRNLRVKGVLVTNPSNPLGTTLTRPELNLLLTFITSKNIHLISDEIYSGTVFSSPD 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+SIME + D + S ++W+R+HIVYSLSKD +PGFRVG IYSN++ VV+AATKMS
Sbjct: 243 --FVSIMEVLKDSS--HSTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVAAATKMS 298
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLL+ MLSDK FT +Y +SGL+ AGI CLKSNAGLF
Sbjct: 299 SFGLVSSQTQYLLASMLSDKNFTKHYISENQKRLKKRQEMLISGLQSAGIGCLKSNAGLF 358
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL S +F++E ELWKKI+++VGLNISPGSSCHC+EPGWFR+CFAN++E+TL +
Sbjct: 359 CWVDMRHLLSSKSFDSEMELWKKIVYQVGLNISPGSSCHCSEPGWFRVCFANMSEDTLDI 418
Query: 421 ALQRIKVFAQSCN 433
A+QRIK F Q+ N
Sbjct: 419 AIQRIKTFVQTTN 431
|
|
| UNIPROTKB|Q00257 ACS2 "1-aminocyclopropane-1-carboxylate synthase CMA101" [Cucurbita maxima (taxid:3661)] | Back alignment and assigned GO terms |
|---|
Score = 1610 (571.8 bits), Expect = 1.8e-165, P = 1.8e-165
Identities = 302/428 (70%), Positives = 352/428 (82%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLS A+C+SHGQDSSYFLGWEAYENNP+ NP+GIIQMGLAENQLSFDLLESWL+ N
Sbjct: 3 MLSTKATCNSHGQDSSYFLGWEAYENNPFHHTSNPNGIIQMGLAENQLSFDLLESWLSKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A KR+G+S+FRELALFQDYHG P KK LV+ MA IRGNKV F+ N +VLTAG+T+
Sbjct: 63 PDAASFKRDGKSIFRELALFQDYHGLPAFKKALVEFMAEIRGNKVSFEANNIVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+ GDAFLLPTPYYPGFDRDLKWR GVEIVPIHC+SSNGF+IT SALE AY
Sbjct: 123 ANETLMFCLAEAGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITQSALEQAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
+ AQT NL+VKGVL+TNPSNPLGT M ELN + +F SK IH++SDEIYSGTVF SP
Sbjct: 183 KDAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVFGSPG 242
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S ME + +R+ E +++W R+HIVYSLSKD +PGFRVG IYSN++ VV+AATKMS
Sbjct: 243 --FVSAMEVLKERS-SEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYXXXXXXXXXXXXXXXVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS MLSDKKFT +Y VSGL+ AGI CL SNAGLF
Sbjct: 300 SFGLVSSQTQYLLSAMLSDKKFTISYISENQKRLKQRQKMLVSGLQKAGINCLDSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL S+ FE+E ELWKKI++EVGLNISPGSSCHC EPGWFR+CFAN++E TL++
Sbjct: 360 CWVDMRHLLESDKFESELELWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSESTLKL 419
Query: 421 ALQRIKVF 428
A++R+K F
Sbjct: 420 AVRRLKSF 427
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q00379 | 1A12_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.5331 | 0.9202 | 0.8643 | N/A | no |
| Q9MB95 | 1A11_PRUMU | 4, ., 4, ., 1, ., 1, 4 | 0.5441 | 0.9116 | 0.8597 | N/A | no |
| Q00257 | 1A12_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.7242 | 0.9159 | 0.8947 | N/A | no |
| Q10DK7 | 1A11_ORYSJ | 4, ., 4, ., 1, ., 1, 4 | 0.6367 | 0.9310 | 0.8870 | yes | no |
| Q42881 | 1A13_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.6818 | 0.9698 | 0.9594 | N/A | no |
| P37821 | 1A1C_MALDO | 4, ., 4, ., 1, ., 1, 4 | 0.6825 | 0.9719 | 0.9534 | N/A | no |
| Q9T065 | 1A18_ARATH | 4, ., 4, ., 1, ., 1, 4 | 0.6836 | 0.9849 | 0.9744 | yes | no |
| A2XLL2 | 1A11_ORYSI | 4, ., 4, ., 1, ., 1, 4 | 0.6367 | 0.9310 | 0.8870 | N/A | no |
| P18485 | 1A12_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.5348 | 0.9116 | 0.8721 | N/A | no |
| P27486 | 1A1C_DIACA | 4, ., 4, ., 1, ., 1, 4 | 0.5268 | 0.9094 | 0.8162 | N/A | no |
| P23279 | 1A11_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.5286 | 0.9202 | 0.8661 | N/A | no |
| P29535 | 1A14_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.5311 | 0.9202 | 0.8970 | N/A | no |
| P23599 | 1A11_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.5264 | 0.9245 | 0.8701 | N/A | no |
| Q07262 | 1A1C_TOBAC | 4, ., 4, ., 1, ., 1, 4 | 0.5361 | 0.9137 | 0.8635 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.6.1.7 | LOW CONFIDENCE prediction! |
| 3rd Layer | 4.4.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 4.4.1.14 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00015005001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (467 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00019455001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (164 aa) | • | 0.426 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 464 | |||
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 1e-171 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 1e-108 | |
| PLN02994 | 153 | PLN02994, PLN02994, 1-aminocyclopropane-1-carboxyl | 4e-65 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 5e-63 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 4e-54 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 1e-40 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 2e-32 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 2e-30 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 1e-29 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 2e-26 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 6e-24 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 3e-23 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 6e-23 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 2e-22 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 8e-22 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 5e-21 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 7e-20 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 3e-19 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 3e-19 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 1e-18 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 1e-18 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 1e-18 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 1e-18 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 5e-18 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 9e-18 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 1e-17 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 2e-17 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 5e-17 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 5e-17 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 6e-17 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 6e-17 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 2e-16 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 1e-15 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 3e-15 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 9e-15 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 2e-14 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 3e-14 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 5e-14 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 7e-14 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 8e-14 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 9e-14 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 1e-13 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 1e-13 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 6e-13 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 1e-12 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 1e-12 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 5e-12 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 6e-12 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 1e-11 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 1e-11 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 5e-11 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 2e-10 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 2e-09 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 3e-09 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 6e-09 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 6e-09 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 2e-08 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 7e-08 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 1e-07 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 3e-07 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 6e-07 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 7e-07 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 8e-07 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 2e-06 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 2e-06 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 3e-06 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 6e-06 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 3e-05 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 5e-05 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 1e-04 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 2e-04 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 3e-04 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 5e-04 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 8e-04 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 0.001 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 0.002 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 0.002 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 0.004 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 0.004 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 879 bits (2272), Expect = 0.0
Identities = 339/472 (71%), Positives = 396/472 (83%), Gaps = 14/472 (2%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LSR A+C+SHGQDSSYFLGWE YE NPYD++ NPSGIIQMGLAENQLSFDL+ESWLA N
Sbjct: 3 LLSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLAKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+A LKRNG+S+FRELALFQDYHG P K L + M+ IRGNKV FDPNKLVLTAG+T+
Sbjct: 63 PDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANETLMFCLA+PGDAFLLPTPYYPGFDRDLKWR GVEIVPIHCSSSNGF+IT SALE AY
Sbjct: 123 ANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
QQAQ LNLKVKGVLITNPSNPLGT T ELN L++F +K IH++SDEIYSGTVFDSP
Sbjct: 183 QQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+S+ME + DR + E+ D+ +R+HIVYSLSKD +PGFRVG IYSN+E VVSAATKMS
Sbjct: 242 -GFVSVMEVLKDRKL-ENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS 299
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQYLLS +LSDKKFT NY++EN+KRL++R++ LVSGL+ AGI+CLKSNAGLF
Sbjct: 300 SFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLF 359
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI++EV LNISPGSSCHC EPGWFR+CFAN++EETL +
Sbjct: 360 CWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDL 419
Query: 421 ALQRIKVFAQSCNP--------QMLLLQRRSIIGKWISKLSSSSSYDQEPDR 464
A++R+K F +S + Q L RR + KW+ +L S +D+EP+
Sbjct: 420 AMKRLKSFVESDSGRRINKSSHQRLKNLRRKTVSKWVFRL---SFHDREPEE 468
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Length = 468 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 623 bits (1609), Expect = 0.0
Identities = 256/427 (59%), Positives = 325/427 (76%), Gaps = 5/427 (1%)
Query: 2 LSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQ 61
LS++A ++HG+DS YF GW+AY+ +PYD+ HNPSG+IQMGLAENQ+SFDLLE +L +
Sbjct: 13 LSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQVSFDLLEEYLKQHP 72
Query: 62 EAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAA 121
EA G FRE ALFQDYHG ++ + M +IRG K +FDP+++VLTAG+TAA
Sbjct: 73 EASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAA 132
Query: 122 NETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181
NE L F LADPGDA L+PTPYYPGFDRDL+WR GV+IVPIHC SSN F++T ALE AYQ
Sbjct: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQ 192
Query: 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241
+A+ N++V+GVLITNPSNPLG + L +++F K IH+VSDEIYSG+VF +
Sbjct: 193 EAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSAS-- 250
Query: 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS 301
F+S+ E V R + R+HIVYSLSKD +PGFRVG IYS N++VV+ A +MSS
Sbjct: 251 EFVSVAEIVEARG---YKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS 307
Query: 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFC 361
F LVSSQTQ+LL+ MLSD++FT NY++ NR+RLRKR EM+V GL+ AGI CLK NAGLFC
Sbjct: 308 FTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFC 367
Query: 362 WVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVA 421
W+++ LL + T E E LW I+ EV LNISPGSSCHC+EPGWFR+CFAN++E+TL+VA
Sbjct: 368 WMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVA 427
Query: 422 LQRIKVF 428
L+RI F
Sbjct: 428 LKRIHRF 434
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Length = 447 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 490 bits (1262), Expect = e-171
Identities = 236/430 (54%), Positives = 309/430 (71%), Gaps = 7/430 (1%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS+IA+ D HG++S YF GW+AY+ +P+ NP GIIQMGLAENQL DL++ W+ N
Sbjct: 11 ILSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKEN 70
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
EA G F ++A FQDYHG ++ + M + RG KV FDP ++V++ G+T
Sbjct: 71 PEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATG 130
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANET+MFCLADPGD FL+P+PYY FDRDL+WR GVEI+P+ CSSS+ F++T+ A + AY
Sbjct: 131 ANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAY 190
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
++AQ N KVKG+++TNPSNPLGT + L +L+ F K IH+V DEIY+ TVF
Sbjct: 191 KKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVF--AG 248
Query: 241 SSFISIMEAVMDRNIDESD-DLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM 299
F+S+ E V D +I E + DL IHIVYSLSKD +PGFRVG++YS N+ VVS A KM
Sbjct: 249 GDFVSVAEVVNDVDISEVNVDL---IHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKM 305
Query: 300 SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGL 359
SSFGLVSSQTQ +L+ MLSD +F N++ E+ +RL R ++ +G+K A I CL SNAGL
Sbjct: 306 SSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGL 365
Query: 360 FCWVDMRHLLVS-NTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETL 418
F W+D+RHLL N+FE+E ELW II +V LN+SPGSS C EPGWFRICFAN+ ++TL
Sbjct: 366 FAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTL 425
Query: 419 QVALQRIKVF 428
VAL RI+ F
Sbjct: 426 HVALGRIQDF 435
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Length = 496 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 325 bits (835), Expect = e-108
Identities = 124/393 (31%), Positives = 188/393 (47%), Gaps = 41/393 (10%)
Query: 38 IIQMGLAENQLSFD--LLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVK 95
++ L N+ D L + + ++A+ L+ G P+ ++ L K
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKDALA--------GGTRNLYGPTDGLPELREALAK 52
Query: 96 LMARIRGNKVKFDPNK-LVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWR 153
+ R +K D +V +G+ A E L+F L +PGDA L+P P YP + R +
Sbjct: 53 FLGR--SPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLA 110
Query: 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNH 213
G E+V SSN F + ALE A ++A K VL T+P NP GT T +EL
Sbjct: 111 -GGEVVRYPLYSSNDFHLDFDALEAALKEAT---EGNKVVLHTSPHNPTGTVATLEELEK 166
Query: 214 LINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDR-NIDESDDLWSRIHIVYSLS 272
L++ +K I ++ DE Y+G VF S AV R + E +L +V S S
Sbjct: 167 LLDLAKEHNILLLVDEAYAGFVFGSLD--------AVATRALLAEGPNL----LVVGSFS 214
Query: 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRK 332
K F + G+RVG I N V+S K++ S+ Q + LSD + ++E R+
Sbjct: 215 KAFGLAGWRVGYILGN-AAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQ 273
Query: 333 RLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNI 392
R+++R++ L GL+ AG+ L S AG F + EA L + ++ EVG+ +
Sbjct: 274 RIKERRDYLRDGLEAAGLSVLPSQAGFFLLTGLDP-------EAALALAQVLLEEVGVYV 326
Query: 393 SPGSSCHCNEPGWFRICFANITEETLQVALQRI 425
+PGSS PGW RI A TEE L+ L+ I
Sbjct: 327 TPGSSFGG--PGWLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 4e-65
Identities = 82/146 (56%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS++A D HG+ S YF GW+AY+ NP+D LHNP GIIQMGLAENQL DL+E W+ N
Sbjct: 8 LLSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEEN 67
Query: 61 QEAVELKRNGE-SLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGST 119
A G F+++ALFQDYHG + +K + MA RG +VKFD + +VL+AG+T
Sbjct: 68 PHADICTAEGTIDSFKDIALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGAT 127
Query: 120 AANETLMFCLADPGDAFLLPTPYYPG 145
AANE +MFC+ADPGDAFL+PTPYY
Sbjct: 128 AANEIIMFCIADPGDAFLVPTPYYAA 153
|
Length = 153 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 5e-63
Identities = 99/387 (25%), Positives = 183/387 (47%), Gaps = 43/387 (11%)
Query: 43 LAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102
L+ + F L EA+ L + G P+ ++ + + + R G
Sbjct: 3 LSIGEPDFPPPPEVL----EALAAAALRAGLLG----YYPDPGLPELREAIAEWLGRRGG 54
Query: 103 NKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162
V P ++V+T G+ A L+ L +PGD L+P P YPG++ + G E+VP+
Sbjct: 55 --VDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLA-GAEVVPVP 111
Query: 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR 222
GF + + LE A K K + + NP+NP G ++ +EL L +K
Sbjct: 112 LDEEGGFLLDLELLEAAKTP------KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHG 165
Query: 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV 282
I I+SDE Y+ V+D +++++A + R+ ++ S SK F +PG R+
Sbjct: 166 ILIISDEAYAELVYDGEPPPALALLDA------------YERVIVLRSFSKTFGLPGLRI 213
Query: 283 GMIYSNNERVVSAATKMSSFGL--VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEM 340
G + + E ++ K+ + S+ +Q + L D + +++E R+R R+R++
Sbjct: 214 GYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE---EHLEELRERYRRRRDA 270
Query: 341 LVSGL-KVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH 399
L+ L ++ + +K + G F W+D+ ++E ++++ E G+ + PGS+
Sbjct: 271 LLEALKELGPLVVVKPSGGFFLWLDLPEG-------DDEEFLERLLLEAGVVVRPGSAFG 323
Query: 400 CNEPGWFRICFANITEETLQVALQRIK 426
G+ R+ FA EE L+ AL+R+
Sbjct: 324 EGGEGFVRLSFAT-PEEELEEALERLA 349
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 4e-54
Identities = 92/359 (25%), Positives = 163/359 (45%), Gaps = 37/359 (10%)
Query: 82 DYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLPT 140
G P+ ++ + + R G + DP + ++ TAG+ A L +PGD L+P
Sbjct: 63 PSAGIPELREAIAEKYKRRYG--LDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPD 120
Query: 141 PYYPGFDRDLKWRPGVEIVPIHCSSS-NGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
P YP ++ +K G + VP+ NGF+ + LE A K K +++ +P+
Sbjct: 121 PGYPSYEAAVKLA-GGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKAIILNSPN 173
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259
NP G + +EL ++ ++ I I+SDEIY V+D + SI+E
Sbjct: 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYD--GAEHPSILEL---------A 222
Query: 260 DLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK---MSSFGLVSSQTQYLLSRM 316
R + S SK + M G+R+G + E +++A K + + QY
Sbjct: 223 GARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSC-APTPAQYAAIAA 281
Query: 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKS-NAGLFCWVDMRHLLVSNTF 374
L+ + ++E R+ R+R+++LV L + G+ +K + + +
Sbjct: 282 LNGPQSDE-VVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPK-----IPELL 335
Query: 375 EAEKELWKKIIFEVGLNISPGSS-CHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432
++E E KK++ E G+ + PGS G+ R+ A +EETL+ AL+R+ F
Sbjct: 336 DSE-EFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAEY 392
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 91/341 (26%), Positives = 164/341 (48%), Gaps = 40/341 (11%)
Query: 101 RGNKVKFDPNKLVLTAG-STAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIV 159
R N + +DP+++++T G A M L DPGD ++P PY+ + +K GV V
Sbjct: 83 RDNGLDYDPSQVIVTTGAKQALYNAFMALL-DPGDEVIIPAPYWVSYPEMVKLAGGV-PV 140
Query: 160 PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSK 219
+ NGF++T+ LE A + K K +++ +PSNP G + +EL + + +
Sbjct: 141 FVPTGEENGFKLTVEQLEAA------ITPKTKALILNSPSNPTGAVYSPEELEAIADVAV 194
Query: 220 SKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG 279
I ++SDEIY V+D + F SI S +L R V SK ++M G
Sbjct: 195 EHDIWVLSDEIYEKLVYD--GAEFTSIASL--------SPELRDRTITVNGFSKAYAMTG 244
Query: 280 FRVG-MIYSNNERVVSAATKMSS--FGLVSSQTQY----LLSRMLSDKKFTCNYMKENRK 332
+R+G + ++ A +K+ S +S QY L+ + ++E R+
Sbjct: 245 WRLGYAAG--PKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDE-------VEEMRQ 295
Query: 333 RLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLN 391
+R++++V GL ++ G+ C K + + ++ LL + E + ++ E G+
Sbjct: 296 AFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLL-GKSITDSLEFAEALLEEAGVA 354
Query: 392 ISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432
+ PG + PG+ R+ +A + E L+ L+RI+ F +S
Sbjct: 355 VVPGIA--FGAPGYVRLSYAT-SLEDLEEGLERIERFLESL 392
|
Length = 393 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-32
Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 39/279 (13%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMF---CLADPGDAFLLPTP 141
G P+ ++ K + + +P+++++T G +E ++F + DPGD L+P P
Sbjct: 67 GIPELREAFAKYYKKWG---IDVEPDEILITNG---GSEAILFAMMAICDPGDEILVPEP 120
Query: 142 YYP---GFDRDLKWRPGVEIVPIHCSSSNGFRI-TISALENAYQQAQTLNLKVKGVLITN 197
+Y GF GV+IVP+ GF + + +E + K K +LI+N
Sbjct: 121 FYANYNGFATSA----GVKIVPVTTKIEEGFHLPSKEEIEKL------ITPKTKAILISN 170
Query: 198 PSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDE 257
P NP G T +EL L +K + ++SDE+Y V+D + S + +++
Sbjct: 171 PGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYD--GLKYTSAL------SLEG 222
Query: 258 SDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL-VSSQTQYLLSRM 316
+D R+ I+ S+SK +S G R+G + S N+ +++AA K+ L + Q + +
Sbjct: 223 LED---RVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAAL 279
Query: 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLK 354
L + +Y E R+ +KR+++L L K+ G+ C K
Sbjct: 280 LDTPE---SYFDEVREEYKKRRDILYEELNKIPGVVCEK 315
|
Length = 397 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-30
Identities = 76/357 (21%), Positives = 143/357 (40%), Gaps = 41/357 (11%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G A++ + + ++ K + +VLT+G + A E + LA+PG L+P P +P
Sbjct: 74 GALAAREAVAEYLSS--DLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFP 131
Query: 145 GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGT 204
+D + G+E+ + I + LE + K +++ NPSNP G+
Sbjct: 132 LYDTRAAFS-GLEVRLYDLLPEKDWEIDLDGLE------SLADEKTVAIVVINPSNPCGS 184
Query: 205 AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264
+ L + ++ I I++DEIY VF + FI + A +
Sbjct: 185 VFSRDHLQKIAEVAEKLGIPIIADEIYGHMVF--GDAPFIPM--ASFASIVP-------- 232
Query: 265 IHIVYSLSKDFSMPGFRVGMIYSNNER------VVSAATKMSSFGLVSSQTQYLLSRMLS 318
+ + +SK + +PG+R+G I ++ V+ + ++ L
Sbjct: 233 VLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ---RILGPATIVQGALP 289
Query: 319 D--KKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKSNAGLFCWV--DMRHLLVSNT 373
D + + L+ E+ LK + G+ C K ++ V ++
Sbjct: 290 DILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELF---PE 346
Query: 374 FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430
+ + + +K+ E + PGS+ P W RI + E L+ A RIK F +
Sbjct: 347 IKDDVDFCEKLAREESVICLPGSA--FGLPNWVRITIT-VPESMLEEACSRIKEFCE 400
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-29
Identities = 88/334 (26%), Positives = 159/334 (47%), Gaps = 45/334 (13%)
Query: 107 FDPNK-LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEI---VPIH 162
+ P +++T G++ A + + +PG +LP P YPG++ P + + P+
Sbjct: 86 YSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYE------PIIRLCGAKPVF 139
Query: 163 C-SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK 221
+ S GFR+T ALENA + K + V++ PSNP G ++ +EL + + K K
Sbjct: 140 IDTRSTGFRLTAEALENA------ITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDK 193
Query: 222 RIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR 281
I ++SDEIYS V++ P +S I+ + ++ I ++ LSK SM G+R
Sbjct: 194 NIFVLSDEIYSELVYEQPHTS-IAHFPEMREKTI-----------VINGLSKSHSMTGWR 241
Query: 282 VGMIYSNNERVVSAATKMSSFGL--VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKE 339
+G +++ + + K+ + + SS +QY L+ K M+ K KR++
Sbjct: 242 IGFLFAPSY-LAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYK---KRRD 297
Query: 340 MLVSGLKVAGIRCLKSNAG--LFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397
+ + L G+ K LF + ++F+ +L ++ GL + PGS+
Sbjct: 298 YVYNRLISMGLDVEKPTGAFYLFPSIGHFT---MSSFDFALDLVEE----AGLAVVPGSA 350
Query: 398 CHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431
G+ R+ +A + ETL+ L R++ F Q
Sbjct: 351 FSEYGEGYVRLSYA-YSIETLKEGLDRLEAFLQQ 383
|
Length = 387 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-26
Identities = 89/427 (20%), Positives = 170/427 (39%), Gaps = 55/427 (12%)
Query: 12 GQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGE 71
S + E + + + L + +I S LE+ + L+ G
Sbjct: 65 APPSGRPVRLELLKPSDPELLEDDPSVIDFAGGLPDPSLFPLEALRRALARV--LRNYGA 122
Query: 72 SLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD 131
SL + G P+ ++ + + RG +P ++V+T+G+ A + L+ L D
Sbjct: 123 SL---ALQYGPTAGLPELREAIAAYLLARRGISC--EPEQIVITSGAQQALDLLLRLLLD 177
Query: 132 PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191
PGD L+ P YPG + L+ G ++P+ +G I ALE A Q K K
Sbjct: 178 PGDTVLVEDPTYPGALQALEAL-GARVIPVP-VDEDG--IDPEALEEALAQ-----WKPK 228
Query: 192 GVLITNPS--NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIME 248
V P+ NP G M+ + L+ ++ + I+ D+ Y +D P ++
Sbjct: 229 AV-YVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKAL-- 285
Query: 249 AVMDRNIDESDDLWSRIHIVY--SLSKDFSMPGFRVGMIYSNNE--RVVSAATKMSSFGL 304
D ++Y S SK + PG R+G + + E + + + G
Sbjct: 286 -------DAPG------RVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRLKQAADLG- 330
Query: 305 VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK---VAGIRCLKSNAGLFC 361
SS +Q L+ L + +++ R+ +R++ L+ L + GLF
Sbjct: 331 PSSLSQAALAAFLLSGHYD-RHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFL 389
Query: 362 WVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS---SCHCNEPGWFRICFANITEETL 418
W+++ + + L E G+ ++P S + R+ F++ +EE +
Sbjct: 390 WLELPEGIDAREL-LAAAL------EKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEI 442
Query: 419 QVALQRI 425
+ ++R+
Sbjct: 443 EEGIKRL 449
|
Length = 459 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 91/354 (25%), Positives = 150/354 (42%), Gaps = 44/354 (12%)
Query: 83 YHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT-AGSTAANETLMFCLADPGDAFLLPTP 141
Y G ++ + R G V+ DP VL+ GS + +PGD L+P P
Sbjct: 66 YEGMLAYRQAVADWYKRRFG--VELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDP 123
Query: 142 YYPGFDRDLKWRPGV-EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSN 200
YP + + G +P+ NGF A+ + K K + I P+N
Sbjct: 124 GYPVYRIGTLFAGGEPYEMPL--KEENGFLPDFDAIPEDIAK------KAKLMFINYPNN 175
Query: 201 PLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260
P G + L+ F+K I + D YS FD + S +E +D + D
Sbjct: 176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKA--PSFLE------VDGAKD 227
Query: 261 LWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS------FGLVSSQTQYLLS 314
+ H SLSK ++M G+R+GM N + +++ K+ + F + QY
Sbjct: 228 VGIEFH---SLSKTYNMTGWRIGMAVGNAD-LIAGLGKVKTNVDSGVFQAI----QYAAI 279
Query: 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTF 374
L+ + + +KE RK ++R+++L+ LK GI K A + WV + S F
Sbjct: 280 AALNGPQ---DVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEGYTSAEF 336
Query: 375 EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
A +++ E G+ ++PG G+ RI + +E L+ A+ RIK
Sbjct: 337 AA------RLLEETGVVVTPGVGFGEYGEGYIRISL-TVPDERLEEAVARIKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 82/337 (24%), Positives = 157/337 (46%), Gaps = 55/337 (16%)
Query: 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRP-----GVEIVPIHCS 164
N++++T G+T A + + +PGD LLP P YPG++ P G EIV I +
Sbjct: 92 NEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYE------PIVNLVGAEIVEID-T 144
Query: 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIH 224
+ N F +T LE A + K+K V++ P+NP G + +++ L + K I
Sbjct: 145 TENDFVLTPEMLEKAILEQGD---KLKAVILNYPANPTGVTYSREQIKALADVLKKYDIF 201
Query: 225 IVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGM 284
++SDE+YS + +SI E + D+ I ++ LSK +M G+R+G+
Sbjct: 202 VISDEVYSELTYT--GEPHVSIAEYLPDQTI-----------LINGLSKSHAMTGWRIGL 248
Query: 285 IYSNNERV----------VSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRL 334
I++ E V+AAT M+ F V L++ K MK+
Sbjct: 249 IFAPAEFTAQLIKSHQYLVTAATTMAQFAAV---------EALTNGKDDALPMKK---EY 296
Query: 335 RKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP 394
KR++ ++ + G + +K + + + + ++F+ ++ + + + P
Sbjct: 297 IKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFAR----KKAVAFIP 352
Query: 395 GSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431
G++ G+ R+ +A + ET++ A++R+K + +
Sbjct: 353 GAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEE 388
|
Length = 391 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 6e-23
Identities = 94/400 (23%), Positives = 175/400 (43%), Gaps = 47/400 (11%)
Query: 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKL 96
G+I +G+ E D + W + +EA SL + + G + ++E+ K
Sbjct: 21 GVISLGVGEP----DFVTPW--NVREASIR-----SLEQGYTSYTANAGLLELRQEIAKY 69
Query: 97 MARIRGNKVKFDPN-KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPG 155
+ + V +DPN ++++T G++ A + M + +PGD L+ P + + + G
Sbjct: 70 LKKRFA--VSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGG 127
Query: 156 VEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLI 215
V VP+ + N F++ + +E A + K K +L+ +P+NP G + EL +
Sbjct: 128 VP-VPVATTLENEFKVQPAQIEAA------ITAKTKAILLCSPNNPTGAVLNKSELEEIA 180
Query: 216 NFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF 275
+ + ++SDEIY+ +D +SF SI + R ++ SK F
Sbjct: 181 VIVEKHDLIVLSDEIYAELTYDEAYTSFASI------------KGMRERTILISGFSKGF 228
Query: 276 SMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT--QYLLSRMLSDKKFTCNYMKENRKR 333
+M G+R+G I + A K+ + ++ + T Q+ L M R
Sbjct: 229 AMTGWRLGFIAAPVY-FSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRM---RDS 284
Query: 334 LRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHL-LVSNTFEAEKELWKKIIFEVGLNI 392
RKR+ V+ G+ C + + + L S F AE +++ E + +
Sbjct: 285 YRKRRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTGLSSEEF-AE-----QLLLEEKVAV 338
Query: 393 SPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432
PGS + G+ R +A E+ LQ A++R+K F ++
Sbjct: 339 VPGSVFGESGEGFIRCSYATSLEQ-LQEAMKRMKRFVENK 377
|
Length = 378 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 2e-22
Identities = 90/374 (24%), Positives = 160/374 (42%), Gaps = 85/374 (22%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G+P+ ++ + + + R G + +V+T G+ A + + +PGD ++ PY+
Sbjct: 74 GYPEVREAIAESLNRRFG--TPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFV 131
Query: 145 GFDRDLKWRPGVE-------IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN 197
++R V+ +VP + ++ F+ + ALE A + K K V+I +
Sbjct: 132 ------EYRFYVDNHGGKLVVVP---TDTDTFQPDLDALEAA------ITPKTKAVIINS 176
Query: 198 PSNPLGTAMTHQELNHL--INFSKSKR----IHIVSDEIYSGTVFDSPSSSFISIMEAVM 251
P+NP G + + L L + KSK I+++SDE Y V+D +I
Sbjct: 177 PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIF---KYY 233
Query: 252 DRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE-----RVVSAATKMS-SFGLV 305
D +I +VYS SK S+PG R+G I N E +V+A + G V
Sbjct: 234 DNSI-----------VVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFV 282
Query: 306 --SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWV 363
+ Q ++++ L D + K NR ++L GL G C+K + +
Sbjct: 283 NAPALMQRVVAKCL-DATVDVSIYKRNR-------DLLYDGLTELGFECVKPQGAFYLFP 334
Query: 364 -----DMRHLLVSNTF--EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEE 416
D F +A+K ++ + PGS C PG+FR+ + + E
Sbjct: 335 KSPEED------DVAFCEKAKKH---NLL------LVPGSGFGC--PGYFRLSYC-VDTE 376
Query: 417 TLQVALQRIKVFAQ 430
T++ +L + A+
Sbjct: 377 TIERSLPAFEKLAK 390
|
Length = 394 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 8e-22
Identities = 79/368 (21%), Positives = 151/368 (41%), Gaps = 49/368 (13%)
Query: 76 ELALFQDYHGF------PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL 129
E A H + P+ ++ +R+ G + P ++ +T+G A M L
Sbjct: 53 EAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAI--SPEQVHITSGCNQAFWAAMVTL 110
Query: 130 ADPGDAFLLPTPYYPGFDRDLKWR-PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNL 188
A GD +LP P+Y F+ + G+ V + C G L + +
Sbjct: 111 AGAGDEVILPLPWY--FNHKMWLDMLGIRPVYLPCDEGPGL------LPDPAAAEALITP 162
Query: 189 KVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248
+ + + + P+NP G + L+ L + ++ I ++ DE Y F S
Sbjct: 163 RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYR---------DFDSGGG 213
Query: 249 AVMDRNIDESDDLWSR--IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVS 306
A D + D W +H+ YS SK +++ G RVG + ++ R+ M + + +
Sbjct: 214 APHDL-FADPD--WDDTLVHL-YSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICA 269
Query: 307 SQ-TQYLLSRM---LSDKKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFC 361
+ Q ++ L+D + NR + +R++ + ++ G L S A F
Sbjct: 270 PRIGQIAVAWGLPNLAD------WRAGNRAEIARRRDAFRAVFARLPGWELLASGA-YFA 322
Query: 362 WVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVA 421
+V RH +E+ +++ E G+ PG+ + G+ R+ FAN +
Sbjct: 323 YV--RHPFPD---RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGEL 377
Query: 422 LQRIKVFA 429
++R++ FA
Sbjct: 378 VERLRAFA 385
|
Length = 386 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 77/350 (22%), Positives = 139/350 (39%), Gaps = 71/350 (20%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G P+ ++ L + ++R+ G V P ++ +T+ A L PGD + TP +P
Sbjct: 62 GIPELREALARYVSRLHG--VATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWP 119
Query: 145 GFDRDLKWRPG--VEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL 202
K G V VP+ G+ + + L A + + + + I +P+NP
Sbjct: 120 NLVAAPKIL-GARVVCVPLD-FGGGGWTLDLDRLLAA------ITPRTRALFINSPNNPT 171
Query: 203 GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS--SFISIMEAVMDRNIDESDD 260
G + +L ++ + + IV+DE+Y + SF+ I E DD
Sbjct: 172 GWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEP---------DD 222
Query: 261 LWSRIHIVYSLSKDFSMPGFRVGMI---------------YSNNERVVSAATKMSSFGLV 305
RI V S SK+++M G+R+G + Y+ + A + +
Sbjct: 223 ---RIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNTS----CVAQFVQRAAVA 275
Query: 306 SSQTQYLLSRMLSD-KKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKSNAG--LFC 361
+ L + + F E RLR+ ++ LV L+ + G+ K + F
Sbjct: 276 A----------LDEGEDFV----AELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFF 321
Query: 362 WVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFA 411
+ L K+++ E GL ++PG++ G+ R CFA
Sbjct: 322 RIP--------GVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFA 363
|
Length = 382 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 7e-20
Identities = 78/353 (22%), Positives = 148/353 (41%), Gaps = 39/353 (11%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G A++ + G + + +VL +G + A E + LA+ G L+P P +P
Sbjct: 74 GALSAREAIASYYHNPDG---PIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFP 130
Query: 145 GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGT 204
+ R L G+E+ + + I + LE ++ K +++ NPSNP G+
Sbjct: 131 LY-RTLAESMGIEVKLYNLLPDKSWEIDLKQLE------SLIDEKTAALVVNNPSNPCGS 183
Query: 205 AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264
+ Q L ++ ++ + + I++DEIY VF ++F + A + N+
Sbjct: 184 VFSRQHLEEILAVAERQCLPIIADEIYGDMVF--SGATFEPV--ASLSSNVP-------- 231
Query: 265 IHIVYSLSKDFSMPGFRVGMIYSNNER-----VVSAATKMSSFGLVS-SQTQYLLSRMLS 318
I L+K + +PG+R+G I ++ R + K+S L + Q L +L
Sbjct: 232 ILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSIL- 290
Query: 319 DKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKSNAG--LFCWVDMRHLLVSNTFE 375
+ Y L + L V G++ + + + ++M H F+
Sbjct: 291 -LRTPQEYFDGTLSVLESNAMLCYGALAAVPGLQPVMPSGAMYMMVGIEMEHF---PEFK 346
Query: 376 AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
+ E +++I E + PGS PG+FR+ + ++ A RI+ F
Sbjct: 347 NDVEFTERLIAEQSVFCLPGSC--FEYPGFFRVVL-TVPVVMMEEACSRIQEF 396
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 3e-19
Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 39/296 (13%)
Query: 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLM-FCLADPGDAFLL 138
+ D G+P +K + + R G V DP+ + LT G+++ + L+ + DP D ++
Sbjct: 111 YTDSAGYPFVRKAVAAFIERRDG--VPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMI 168
Query: 139 PTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP 198
P P YP + + G + VP + G+ + LE AY+QA + + +++ NP
Sbjct: 169 PIPQYPLYSAAITLLGGKQ-VPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINP 227
Query: 199 SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAV--MDRNID 256
NP G +T + +I F K I +++DE+Y ++D FIS + + + +
Sbjct: 228 GNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYD-GEKPFISFRKVLLELPAEYN 286
Query: 257 ESDDLWSRIHIVYSLSKDF-SMPGFRVGM--IYSNNERVVSAATKMSSFGLVSSQT--QY 311
+L S H S SK G R G + + V K++S L S Q
Sbjct: 287 TDVELVS-FH---STSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINL-CSNVVGQL 341
Query: 312 LLSRMLSDKKFTCN--------YMKENRKR------LRKRKEMLVSGL-KVAGIRC 352
+ M CN Y R+R L++R E+L L K+ G+ C
Sbjct: 342 MTGLM-------CNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSC 390
|
Length = 481 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 81/338 (23%), Positives = 138/338 (40%), Gaps = 67/338 (19%)
Query: 108 DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEI-VPIHCSSS 166
DP ++++T G + A L DPG +LL P YP L+ G VP+ S
Sbjct: 91 DPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDS- 149
Query: 167 NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIV 226
+++T AL + A T+ G L+ +P+NP GT ++ EL L +++ H+V
Sbjct: 150 -RYQLT-PALVERHWNADTV-----GALVASPANPTGTLLSRDELAALSQALRARGGHLV 202
Query: 227 SDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIY 286
DEIY G + ++S + + DD + ++ S SK F M G+R+G +
Sbjct: 203 VDEIYHGLTYGVDAASVLEV-----------DDDAF----VLNSFSKYFGMTGWRLGWLV 247
Query: 287 SNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344
+ V K++ + S+ Q+ + + + T ++ R +R++ L+
Sbjct: 248 A-PPAAVPELEKLAQNLYISASTPAQH--AALACFEPETLAILEARRAEFARRRDFLLPA 304
Query: 345 LKVAG----------------IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEV 388
L+ G I +A FC RH L E E
Sbjct: 305 LRELGFGIAVEPQGAFYLYADISAFGGDAFAFC----RHFL-------ETE--------- 344
Query: 389 GLNISPGSSCHCNEPGWFRICFANITE-ETLQVALQRI 425
+ +PG ++ G + FA LQ A++RI
Sbjct: 345 HVAFTPGLDFGRHQAGQ-HVRFAYTQSLPRLQEAVERI 381
|
Length = 387 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 83/357 (23%), Positives = 152/357 (42%), Gaps = 39/357 (10%)
Query: 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLP 139
+ G P+ ++ +VK R N V P+ + +TA T A + + L DPGD L+P
Sbjct: 66 YGPSEGLPELREAIVK--REKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIP 123
Query: 140 TPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
P YP + +K+ GV V G++ I + + + K K + + NP+
Sbjct: 124 GPSYPPYTGLVKFYGGVP-VEYRTIEEEGWQPDIDDIR------KKITEKTKAIAVINPN 176
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259
NP G + L +++ + + ++SDEIY ++ +S D +
Sbjct: 177 NPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYE---GKHVSPGSLTKDVPV---- 229
Query: 260 DLWSRIHIVYS-LSKDFSMPGFRVGMIY-SNNE----RVVSAATKMSSFGLV-SSQTQYL 312
IV + LSK + G+R+G IY + E V A K++ L ++ Q+
Sbjct: 230 -------IVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFA 282
Query: 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVDMRHLLVS 371
L+ +Y++E K+L++R++ + L ++ GI K + + +
Sbjct: 283 AIAGLTGPM---DYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIE----E 335
Query: 372 NTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
++ +KE ++ E + GS G FR+ F E L+ A+ R + F
Sbjct: 336 GPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDRFEEF 391
|
Length = 398 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 84/364 (23%), Positives = 145/364 (39%), Gaps = 61/364 (16%)
Query: 83 YHGFPDAKKE-LVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTP 141
Y PD+ ++ +A+ G + DP +V G + + L PG+ ++ TP
Sbjct: 58 YTLPPDSLYAAVINWLAQRHG--WQIDPEWIVFLPGVVPSLFAAVRALTAPGEGVIVQTP 115
Query: 142 YYPGFDRDLKW--RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
YP F +K R V P+ +R + LE+A + K + +L+ +P
Sbjct: 116 VYPPFLSAVKSNGRELVL-NPLKLDP-GRYRFDLEDLEDAITE------KARLLLLCSPH 167
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDES 258
NP+G T +EL L + +VSDEI++ V+ + S+ + +R +
Sbjct: 168 NPVGRVWTREELTRLAELCLRHNVVVVSDEIHADLVYPPNKHIPLASLSPEIAERTVTLL 227
Query: 259 DDLWSRIHIVYSLSKDFSMPGFRVG-MIYSNNE--RVVSAATK------MSSFGLVSSQT 309
S K F++ G + I N E R A + + FG V+ +
Sbjct: 228 -----------SPGKTFNIAGLNISFAIIPNPELRRAFQEAAQRVHIQHGNLFGYVAFEA 276
Query: 310 QY-----LLSRMLSDKKFTCNYMKENRKRLRK--RKEMLVSGLKVAGIRCLKSNAGLFCW 362
Y L +L+ Y++ NR + + K + IR A W
Sbjct: 277 AYREGEPWLDALLA-------YLRGNRDLVEEFIAKRLP-------QIRVRPPEATYLAW 322
Query: 363 VDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVAL 422
+D R L + + +L I + GL ++PG S G+ R+ F TL+ AL
Sbjct: 323 LDCRALGLDD-----ADLRAFFIEQAGLGLNPGISFGDGGSGFMRLNFG-CPRSTLEQAL 376
Query: 423 QRIK 426
+R++
Sbjct: 377 ERLR 380
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-18
Identities = 82/353 (23%), Positives = 149/353 (42%), Gaps = 46/353 (13%)
Query: 83 YHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA-GSTAANETLMFCLADPGDAFLLPTP 141
Y G + +K + R G V+ DP V++ GS + +PGD L+P P
Sbjct: 68 YEGMLEFRKAVADWYKRRFG--VELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDP 125
Query: 142 YYPGFDRDLKWRPG-VEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSN 200
YP + + G +P+ NGF + A+ + + K K + I P+N
Sbjct: 126 GYPVYKIGTIFAGGEPYFMPL--KEENGFLPDLDAI------PEDVAKKAKLMFINYPNN 177
Query: 201 PLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS-PSSSFISIMEAVMDRNIDESD 259
P G + +++F+K I + D YS +D SF+ + D I+
Sbjct: 178 PTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEV-PGAKDVGIE--- 233
Query: 260 DLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS------FGLVSSQTQYLL 313
+SLSK ++M G+R+G N +++ K+ S F + Q
Sbjct: 234 --------FHSLSKTYNMTGWRIGFA-VGNADLIAGLGKVKSNVDSGVFQAI----QEAG 280
Query: 314 SRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNT 373
L+ + ++E RK ++R+++LV GL+ G+ A + W V
Sbjct: 281 IAALNGPQ---EVVEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAP-----VPKG 332
Query: 374 FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
+ + E ++ + G+ ++PG+ G+FRI + +E ++ A++RIK
Sbjct: 333 YTSA-EFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT-VPDERIEEAVERIK 383
|
Length = 385 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 78/337 (23%), Positives = 152/337 (45%), Gaps = 53/337 (15%)
Query: 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162
+ P ++V+TAG++AA L+ CLA + GD L+P P YP +R V +
Sbjct: 86 LDVAPERIVVTAGASAA--LLLACLALVERGDEVLMPDPSYPC-NRHFVAAAEGRPVLVP 142
Query: 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR 222
+ F++T + +E A+ + +GVL+ +PSNP GT++ EL ++ +++
Sbjct: 143 SGPAERFQLTAADVEAAW------GERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARG 196
Query: 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV 282
+ DEIY G +D+ S +S+ + V+ N S SK F+M G+R+
Sbjct: 197 GFTIVDEIYQGLSYDAAPVSALSLGDDVITIN---------------SFSKYFNMTGWRL 241
Query: 283 G-MIYSNNERVVSAATKMSS--FGLVSSQTQY--LLSRMLSDKKFTCNYMKENRKR---L 334
G ++ E +V K++ F S+ Q+ L F + + +R
Sbjct: 242 GWLVVP--EALVGTFEKLAQNLFICASALAQHAALAC-------FEPDTLAIYERRRAEF 292
Query: 335 RKRKEMLVSGLKVAGIRC-LKSNAGLFCWVDMR---HLLVSNTFEAEKELWKKIIFEVGL 390
++R++ +V L+ G + + + + + D R H ++ + + + G+
Sbjct: 293 KRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLH----DAGV 348
Query: 391 NISPGSSCHCNEPGWF-RICFANITEETLQVALQRIK 426
+ PG + P + R+ +A + L+ A+ R+
Sbjct: 349 VLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLG 384
|
Length = 388 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 5e-18
Identities = 84/328 (25%), Positives = 141/328 (42%), Gaps = 35/328 (10%)
Query: 105 VKFDPNKLV-LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163
+ DP K V +T+G T A + L +PGD +L P+Y ++ L G +I +
Sbjct: 110 LVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS-MAGAKIKTVTL 168
Query: 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223
+ F + L+ A+ K + +LI P NP G T +EL + + K +
Sbjct: 169 RPPD-FAVPEDELKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLCKENDV 221
Query: 224 HIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVG 283
+DE+Y F+ S S+ ++ R + SL K FS+ G+++G
Sbjct: 222 LAFTDEVYDKLAFEGDHISMASL------------PGMYERTVTMNSLGKTFSLTGWKIG 269
Query: 284 MIYS--NNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341
+ + V A +F ++ Q+ L + +Y +E ++ +K++L
Sbjct: 270 WAIAPPHLTWGVRQAHSFLTFA-TATPMQWAAVAALRAPE---SYYEELKRDYSAKKDIL 325
Query: 342 VSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN 401
V GLK G + S+ F VD FE + + +I EVG+ P S + N
Sbjct: 326 VEGLKEVGFKVYPSSGTYFVMVDHTPF----GFENDIAFCEYLIEEVGVAAIPPSVFYLN 381
Query: 402 -EPG--WFRICFANITEETLQVALQRIK 426
E G R F EETL+ A++R+K
Sbjct: 382 PEDGKNLVRFAFCK-DEETLRAAVERMK 408
|
Length = 413 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 9e-18
Identities = 87/353 (24%), Positives = 143/353 (40%), Gaps = 61/353 (17%)
Query: 22 EAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQ 81
A E +P +L I MG+ E D VE+ E+ E +
Sbjct: 36 AAKEKHPDMEL------IDMGVGEPDEMADE---------SVVEVLCE-EAKKPENRGYA 79
Query: 82 DYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA-GSTAANETLMFCLADPGDAFLLPT 140
D +G + K+ + M ++ G K DP V+ + GS A L C +PGD L+
Sbjct: 80 D-NGIQEFKEAAARYMEKVFGVK-DIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTV 137
Query: 141 PYYPGFDRDLKWRPG-VEIVPIHCSSSNGFRITISAL-ENAYQQAQTLNLKVKGVLITNP 198
P YP K+ G V +P+ N F + ++ ++ ++A+ L L P
Sbjct: 138 PGYPVTGTHTKYYGGEVYNLPLL--EENNFLPDLDSIPKDIKEKAKLLYLNY-------P 188
Query: 199 SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDES 258
+NP G T + +++F+K I +V D Y+ FD SF+S+ A + ++
Sbjct: 189 NNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGA-KEVGVE-- 245
Query: 259 DDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLV-----SSQ---TQ 310
IH SLSK ++M G+R+ + NE +V A F V S Q Q
Sbjct: 246 ------IH---SLSKAYNMTGWRLAFV-VGNELIVKA------FATVKDNNDSGQFIAIQ 289
Query: 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWV 363
L + T ++ R++ +R + LV L G + + +V
Sbjct: 290 KAGIYALDHPEIT----EKIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYV 338
|
Length = 410 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 82/378 (21%), Positives = 164/378 (43%), Gaps = 49/378 (12%)
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
Q AV GE+ + + G P +K ++ + R G + + N++ + G+
Sbjct: 53 QAAVAAIERGETKYTLVN------GTPALRKAIIAKLERRNG--LHYADNEITVGGGAKQ 104
Query: 121 ANETLMFCLADPGDAFLLPTPY---YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALE 177
A + + GD ++P PY YP D+ V + C GF++T ALE
Sbjct: 105 AIFLALMATLEAGDEVIIPAPYWVSYP----DMVLANDGTPVIVACPEEQGFKLTPEALE 160
Query: 178 NAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLIN-FSKSKRIHIVSDEIYSGTVF 236
A + + + +++ PSNP G + EL L + + + +++D+IY F
Sbjct: 161 AA------ITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRF 214
Query: 237 -DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA 295
D P+ ++ + D R+ + +SK ++M G+R+G + + +
Sbjct: 215 DDEPTPHLLAAAPELRD-----------RVLVTNGVSKTYAMTGWRIGYAAGPADLIAAI 263
Query: 296 ATKMS-SFGLVSSQTQYLLSRML-SDKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRC 352
S S SS +Q + L D+ F + E+ ++R++ ++ L + G+ C
Sbjct: 264 NKLQSQSSSCPSSISQAAAAAALNGDQSF----VTESVAVYKQRRDYALALLNAIPGLSC 319
Query: 353 LKSNAGLFCWVDMRHLLVSNT-----FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFR 407
L + + +V+ L+ T E ++++ ++ G+ + G++ + P +FR
Sbjct: 320 LVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTA-YGLSP-YFR 377
Query: 408 ICFANITEETLQVALQRI 425
+ A + ETL+ A RI
Sbjct: 378 LSIAT-SLETLEEACARI 394
|
Length = 402 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 76/337 (22%), Positives = 132/337 (39%), Gaps = 53/337 (15%)
Query: 56 WLASN-------QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108
L+SN + +E R A + +PD + +L A + D
Sbjct: 26 KLSSNENPYGPPPKVIEAIR---------AALDKLNRYPDP--DYRELRAALAEYYGVVD 74
Query: 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNG 168
P +++ GS E L+ +PGD L+P P + ++ + G E+V +
Sbjct: 75 PENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLA-GAEVVKV---PLKE 130
Query: 169 FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSD 228
FR+ + A+ A + K K V + NP+NP GT + +EL L+ + +V D
Sbjct: 131 FRLDLDAILAAIRD------KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGL-VVID 183
Query: 229 EIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSN 288
E ++I + +L ++ + SK F + G RVG +N
Sbjct: 184 E------------AYIEFSPESSLELLKYPPNLI----VLRTFSKAFGLAGLRVGYAIAN 227
Query: 289 NERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348
E + + F VSS L D Y++E+ +R+R+ +E L + LK
Sbjct: 228 PELIAALNKVRPPFN-VSSPALAAAIAALRDAD----YLEESVERIREERERLYAALKAL 282
Query: 349 GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKII 385
G+ + + F V + + + L KK I
Sbjct: 283 GLFGVFPSQANFVLVRVPD---AEAAALAEALLKKGI 316
|
Length = 356 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 5e-17
Identities = 77/318 (24%), Positives = 134/318 (42%), Gaps = 39/318 (12%)
Query: 105 VKFDPNKLVL-TAGSTAANETLMFCLADPGD---AFLLPTPYYPGFDRDLKWRPGVEIVP 160
VK DP+ VL +AGS A DP + + TP YP ++R + G E
Sbjct: 55 VKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALF-AGGEPTA 113
Query: 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS 220
+ +GF + + +E + + + K V I P NP G L I +
Sbjct: 114 VKLKKEDGFLLRLEKVEKSILE------ETKIVWINYPHNPTGATAPRSYLKETIAMCRE 167
Query: 221 KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF 280
I + SDE Y+ F P S +E ++ + +SLSK M G+
Sbjct: 168 HGIILCSDECYTEIYFGEPPH---SALEVGIENVL-----------AFHSLSKRSGMTGY 213
Query: 281 RVGMIYSNNERVVSAATKM-SSFGLVSSQ-TQYLLSRMLSDKKFTCNYMKENRKRLRKRK 338
R G + + +E+++S K+ ++FG+ S Q SD N++ E RK ++++
Sbjct: 214 RSGFV-AGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDD----NHVLERRKIFKRKR 268
Query: 339 EMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398
++ + G+ L +A + WV V + +A+ + + E G+ ++PG +
Sbjct: 269 DLFIEFFNKVGLEYLYPDATFYLWVK-----VPSGIDAKD--YALRLLENGIVVAPGENF 321
Query: 399 HCNEPGWFRICFANITEE 416
E G+ R+ EE
Sbjct: 322 GSGEEGYVRVALVPTLEE 339
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 5e-17
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 40/329 (12%)
Query: 105 VKFDPNKLVLT-AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163
V + +K VL GS L A+PGD L+P P Y ++ ++ G +
Sbjct: 88 VILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQM-AGATSYYMPL 146
Query: 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQE-LNHLINFSKSKR 222
N F + + K K +++ P NP+ AM H++ +I F+K
Sbjct: 147 KKENDFLPDLELIPEEIAD------KAKMMILNFPGNPV-PAMAHEDFFKEVIAFAKKHN 199
Query: 223 IHIVSDEIYSGTVFDSPSS-SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR 281
I +V D Y+ FD SF+S+ A + ++ + SLSK +S+ G R
Sbjct: 200 IIVVHDFAYAEFYFDGNKPISFLSVPGA-KEVGVE-----------INSLSKSYSLAGSR 247
Query: 282 VG-MIYSNNERVVSAATKMSS---FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKR 337
+G MI NE +V A T+ S +G V Q L + + ++NR ++R
Sbjct: 248 IGYMI--GNEEIVRALTQFKSNTDYG-VFLPIQKAACAAL---RNGAAFCEKNRGIYQER 301
Query: 338 KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397
++ LV G + G K +F W ++ S +F ++ + ++PG +
Sbjct: 302 RDTLVDGFRTFGWNVDKPAGSMFVWAEIPKGWTSLSFA------YALMDRANVVVTPGHA 355
Query: 398 CHCNEPGWFRICFANITEETLQVALQRIK 426
+ G+ RI EE LQ A++ I+
Sbjct: 356 FGPHGEGFVRIALVQ-DEEVLQQAVENIR 383
|
Length = 399 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 60/370 (16%)
Query: 77 LALFQD--YHGFP------DAKKELVKLMARIRGNKVKFDPNKLVLT-AGSTAANETLMF 127
+A D HG+P ++ + R G V+ DP+ L GS L
Sbjct: 58 IAALADPQNHGYPPFEGTASFRQAITDWYHRRYG--VELDPDSEALPLLGSKEGLTHLAL 115
Query: 128 CLADPGDAFLLPTPYYPGFDRDLKWRP---GVEIVPIHCSSSNGFRITISAL-ENAYQQA 183
+PGD L+P+P YP R P G +I PI N + I +S++ E QQA
Sbjct: 116 AYVNPGDVVLVPSPAYPAHFRG----PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQA 171
Query: 184 QTLNLKVKGVLITN-PSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD--SPS 240
+ +L N PSNP + ++ F++ I +V D Y+ FD P+
Sbjct: 172 K--------ILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPT 223
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
S ++E I + D+ H +LSK ++M G+RVG + N + T +
Sbjct: 224 S----LLE------IPGAKDIGVEFH---TLSKTYNMAGWRVGFVVGNRHIIQGLRTLKT 270
Query: 301 S--FGLVSS-QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNA 357
+ +G+ S+ Q + L D +Y+++ ++R R R++ L+ GL G + A
Sbjct: 271 NLDYGIFSALQKAAETALQLPD-----SYLQQVQERYRTRRDFLIQGLGELGWNIPPTKA 325
Query: 358 GLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITE-E 416
++ WV + S F ++ + G+ ++PG++ G+ RI I + +
Sbjct: 326 TMYLWVPCPVGMGSTDFAL------NVLQKTGVVVTPGNAFGEGGEGYVRISL--IADCD 377
Query: 417 TLQVALQRIK 426
L AL R+K
Sbjct: 378 RLGEALDRLK 387
|
Length = 394 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-17
Identities = 78/314 (24%), Positives = 133/314 (42%), Gaps = 51/314 (16%)
Query: 129 LADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNG-FRITISALENAYQQAQTLN 187
L PGD ++ TP YP F +K G +++ +G + I ALE A+
Sbjct: 103 LTKPGDGVVIQTPVYPPFYNAIK-LNGRKVIENPLVEDDGRYEIDFDALEKAFVDE---- 157
Query: 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF-DSPSSSFISI 246
+VK ++ NP NP G T +EL + + ++SDEI++ V F S+
Sbjct: 158 -RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASL 216
Query: 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVG-MIYSNNE------RVVSAATKM 299
E D +I + S SK F++ G + +I SN E + +
Sbjct: 217 SERFADNSI-----------TLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLH 265
Query: 300 --SSFGLVSSQTQY-----LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352
S+ G+++++ Y L +L Y+K+NR + + G+KV
Sbjct: 266 GPSALGIIATEAAYNQGEPWLDELL-------EYLKDNRDYVADFLNKHLPGVKV----- 313
Query: 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN 412
+ W+D R L + + EL + ++ E + +SPGS+ G+ R+ FA
Sbjct: 314 TEPQGTYLAWLDCRELGLD-----DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFA- 367
Query: 413 ITEETLQVALQRIK 426
L+ AL+R+K
Sbjct: 368 CPRAILEEALERLK 381
|
Length = 388 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-16
Identities = 71/328 (21%), Positives = 148/328 (45%), Gaps = 36/328 (10%)
Query: 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRI 171
+VL +G + A + L D GD L+P P +P ++ K G+E+ +C +
Sbjct: 107 VVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAY-GIEMRFYNCRPEKDWEA 165
Query: 172 TISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIY 231
+ + + ++ + K +++TNPSNP G+ + + + +I + R+ ++SDEIY
Sbjct: 166 DLDEI------RRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIY 219
Query: 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMI-----Y 286
+G VF+ ++F S+ A D + R+ I+ +K+ +PG+R+G + +
Sbjct: 220 AGMVFN--GATFTSV--ADFDTTV-------PRV-ILGGTAKNLVVPGWRLGWLLLVDPH 267
Query: 287 SNNERVVSAATKMSSFGL-VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345
N + ++ S Q L L ++++ +L + +L + +
Sbjct: 268 GNGGDFLDGMKRLGMLVCGPCSVVQAALGEALL--NTPQEHLEQIVAKLEEGAMVLYNHI 325
Query: 346 K-VAGIRCLKSNAGLFCW--VDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNE 402
G+ +F +D+ +++ E ++K++ E + + PG H
Sbjct: 326 GECIGLSPTMPRGSMFLMSRLDLEKF---RDIKSDVEFYEKLLEEENVQVLPGEIFHM-- 380
Query: 403 PGWFRICFANITEETLQVALQRIKVFAQ 430
PG+ R+ + E L+ A++RIK F +
Sbjct: 381 PGFTRLTISR-PVEVLREAVERIKAFCE 407
|
Length = 412 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 77/342 (22%), Positives = 145/342 (42%), Gaps = 62/342 (18%)
Query: 76 ELALFQDYHGFPDAK--KELVKLMAR--IRGNKVKFDPNK-LVLTAGSTAANETLMFCLA 130
E+A D HG+ ++ L + ++R V DP ++T GS LM
Sbjct: 53 EVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL 112
Query: 131 DPGDAFLLPTPYYP---------GFD-RDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
D GD L+P P YP G R + GV+ + LE A
Sbjct: 113 DHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDF--------------FNELERAI 158
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
+++ K K +++ PSNP + + ++ +K + +V D Y+ V+D
Sbjct: 159 RESYP---KPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWK 215
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
+ SIM+ +++ ++LSK ++M G+R+G + N E +VSA ++
Sbjct: 216 AP--SIMQVPGAKDVAVE---------FFTLSKSYNMAGWRIGFMVGNPE-LVSALARIK 263
Query: 301 SF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNA 357
S+ G + ++ + D++ C +++ ++ ++R+++LV GL AG A
Sbjct: 264 SYHDYGTFTPLQVAAIAALEGDQQ--C--VRDIAEQYKRRRDVLVKGLHEAGWMVEMPKA 319
Query: 358 GLFCWVDM----RHLLVSNTFEAEKELWKKIIFEVGLNISPG 395
++ W + + E KK++ E + +SPG
Sbjct: 320 SMYVWAKIPEPYAAM-------GSLEFAKKLLNEAKVCVSPG 354
|
Length = 395 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 89/406 (21%), Positives = 167/406 (41%), Gaps = 68/406 (16%)
Query: 41 MGLAENQLSFDLLESWLAS--NQEAVEL-KRNGESLFRELALFQ-DY---HGFPDAKKEL 93
+ + E ++D+ ES + S +E + L +N E+ ++EL + Y G P+ K+ +
Sbjct: 12 LNVYEKSATYDIAESCIDSLTLEELLALAGKNPEAFYQELGQKKLTYGWIEGSPEFKEAV 71
Query: 94 VKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAF--LLPTPYYPGFDRDLK 151
L + P ++ T G+T AN +++ L +PGD + PT Y +D
Sbjct: 72 ASLYQNV-------KPENILQTNGATGANFLVLYALVEPGDHVISVYPT-YQQLYDIPES 123
Query: 152 WRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQEL 211
V+ + NG+ L + + + + K + I N +NP G M L
Sbjct: 124 LGAEVDYWQLK--EENGW------LPDLDELRRLVRPNTKLICINNANNPTGALMDRAYL 175
Query: 212 NHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271
++ ++S +++SDE+Y D + S DL+ + S+
Sbjct: 176 EEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIA---------------DLYEKGISTNSM 220
Query: 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENR 331
SK +S+PG RVG I +N E V+ K + ++ + + D + E+R
Sbjct: 221 SKTYSLPGIRVGWIAANEE-VIDILRKYRDYTMICAG-------VFDDMLAS--LALEHR 270
Query: 332 KRLRKRKEMLVSG-LKV--------AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWK 382
+ +R +V L + + +K A +V + + S F
Sbjct: 271 DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDMPSEDF------CL 324
Query: 383 KIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
K++ E G+ + PG+ + G RI + ETL+ L+++ F
Sbjct: 325 KLLKETGVLLVPGN--RFDLEGHVRIGYCC-DTETLKKGLKKLSEF 367
|
Length = 373 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 9e-15
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 31/225 (13%)
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
A E + G + + D G + +E++K ++ + F N+++ T G+
Sbjct: 49 NAAFEDAKKGHTRY------TDSGGDVELIEEIIKYYSKNYD--LSFKRNEIMATVGACH 100
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
+ + DPGD ++ PY+ + ++ G I+ + +GF+I + LE
Sbjct: 101 GMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPII-LETYEEDGFQINVKKLEAL- 158
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
+ K K +++ +P+NP G + + L + + + I+SDE+Y G F
Sbjct: 159 -----ITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED- 212
Query: 241 SSFISI--MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVG 283
F+ + + + +R I S SKDF+M G+R+G
Sbjct: 213 --FVPMATLAGMPERTI-----------TFGSFSKDFAMTGWRIG 244
|
Length = 384 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 34/278 (12%)
Query: 99 RIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVE 157
R R +++DP+ VL T G+T A + L +PGD LL PYY + +
Sbjct: 74 RRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHR 133
Query: 158 I-VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLIN 216
+ VP+ GF + + AL A + + +++ +P NP GT +T EL +
Sbjct: 134 VPVPLV-PDGRGFALDLDALRAAVTP------RTRALIVNSPHNPTGTVLTAAELAAIAE 186
Query: 217 FSKSKRIHIVSDEIYSGTVFDS----PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272
+ + +++DE+Y VFD P ++ + R + S +
Sbjct: 187 LAVEHDLLVITDEVYEHLVFDGARHLPLATL---------------PGMRERTVTISSAA 231
Query: 273 KDFSMPGFRVGMIYSNNERV--VSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKEN 330
K F++ G+++G + V AA + ++ + + Q ++ L + ++
Sbjct: 232 KTFNVTGWKIGWACGPAPLIAAVRAAKQYLTY-VGGAPFQPAVAHALDHED---AWVAAL 287
Query: 331 RKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHL 368
R L+ +++ L +GL AG S F D R L
Sbjct: 288 RDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPL 325
|
Length = 387 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL----ADP 132
L + D G P +KE+ + + R G DP + LT G A++ +M L
Sbjct: 100 LGAYSDSRGLPGVRKEVAEFIERRDG--YPSDPELIFLTDG---ASKGVMQILNAVIRGE 154
Query: 133 GDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192
D L+P P YP + + G +VP + S + + ++ L + QA++ + V+
Sbjct: 155 KDGVLVPVPQYPLYSATISLLGGT-LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRA 213
Query: 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMD 252
++I NP NP G ++ L ++ F +R+ ++ DE+Y ++ FIS + +MD
Sbjct: 214 MVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQD-ERPFISAKKVLMD 272
|
Length = 407 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 5e-14
Identities = 67/326 (20%), Positives = 149/326 (45%), Gaps = 31/326 (9%)
Query: 104 KVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163
V D + +++TAG+ A L + GD ++P P + + D K + + I
Sbjct: 88 GVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKI-AEAKPIRIPL 146
Query: 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223
N F+ L + + + + ++I P+NP G + + + + ++ I
Sbjct: 147 REENEFQPDPDEL------LELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNI 200
Query: 224 HIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVG 283
+I+SDE Y +++ + +++ D I + S SK F+M G+R+G
Sbjct: 201 YILSDEPYEHFLYE--GAKHYPMIKYAPDNTI-----------LANSFSKTFAMTGWRLG 247
Query: 284 MIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341
+ + E+V+ K+ ++ G V+S Q L K+ + ++E RK +R++++
Sbjct: 248 FVIA-PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKE-SWKAVEEMRKEYNERRKLV 305
Query: 342 VSGLK-VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400
+ LK + I+ + + + ++ +S+ AE W ++ + + + PG++
Sbjct: 306 LKRLKEMPHIKVFEPKGAFYVFANIDETGMSSEDFAE---W--LLEKARVVVIPGTAFGK 360
Query: 401 NEPGWFRICFANITEETLQVALQRIK 426
G+ RI +A E+ ++ A++R++
Sbjct: 361 AGEGYIRISYATSKEKLIE-AMERME 385
|
Length = 391 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 7e-14
Identities = 65/245 (26%), Positives = 95/245 (38%), Gaps = 48/245 (19%)
Query: 61 QEAVE-LKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV-LTAGS 118
QEA E + S FR G+P K+ R G V DP V + G
Sbjct: 55 QEAAENPANHKYSPFR---------GYPFLKEAAADFYKREYG--VTLDPETEVAILFGG 103
Query: 119 TAANETLMFCLADPGDAFLLPTPYYPGFDRDLKW------RPGVEIVPIHCSSSNGFRIT 172
A L CL +PGD L+P P YP + R E +P+ + N F
Sbjct: 104 KAGLVELPQCLMNPGDTILVPDPGYPDY-----LSGVALARAQFETMPLI--AENNFLPD 156
Query: 173 ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232
+ + + K K + + P+NP G T + F+K I +V D Y
Sbjct: 157 YTKIPEEVAE------KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYG 210
Query: 233 GTVFDS--PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE 290
FD P +S ++ +++ I + Y+LSK F+M G+RV NE
Sbjct: 211 AIGFDGQKP----VSFLQTPGAKDVG--------IEL-YTLSKTFNMAGWRVAFA-VGNE 256
Query: 291 RVVSA 295
V+ A
Sbjct: 257 SVIEA 261
|
Length = 389 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 8e-14
Identities = 81/304 (26%), Positives = 127/304 (41%), Gaps = 48/304 (15%)
Query: 105 VKFDPNK-LVLTAGSTAANETLMFCLADPGDAFLLPTPYYP----GFDRDLKWRPGVEIV 159
VK +P+ +V T GS + + PGD L P P YP GF G I
Sbjct: 87 VKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGF-----IMAGGVIR 141
Query: 160 PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN-PSNPLGTAMTHQELNHLINFS 218
+ F ALE A + + + LI N PSNP ++ F+
Sbjct: 142 SVPAEPDEEF---FPALERAVRHS----IPKPIALIVNYPSNPTAYVADLDFYKDVVAFA 194
Query: 219 KSKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM 277
K I I+SD YS FD +P S + + A D ++ S+SK FSM
Sbjct: 195 KKHDIIILSDLAYSEIYFDGNPPPSVLQVPGA-KDVTVE-----------FTSMSKTFSM 242
Query: 278 PGFRVGMIYSNNERVVSAATKMSSFGLVSSQT--QYLLSRMLSDKKFTCNYMKENRKRLR 335
G+R+G NER+++A T++ S+ + T Q + L+ + + + E R+ +
Sbjct: 243 AGWRMGFA-VGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQ---DCIAEMRELYK 298
Query: 336 KRKEMLVSGLKVAGIRCLKSNAGLFCWVDM----RHLLVSNTFEAEKELWKKIIFEVGLN 391
KR+++LV AG A +F W + RHL E K ++ + +
Sbjct: 299 KRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFRHL-------GSLEFSKLLVEKADVA 351
Query: 392 ISPG 395
++PG
Sbjct: 352 VAPG 355
|
Length = 405 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 9e-14
Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 40/305 (13%)
Query: 56 WLASNQEAVELKRNGESLFRELALFQDYHGFPDAK-KELVKLMARIRGNKVKFDPNKLVL 114
L SN+ ++ A H +PD EL + +A G DP +++L
Sbjct: 23 KLNSNENPFGPPP--KAKEALRAEADKLHRYPDPDPAELKQALADYYG----VDPEQILL 76
Query: 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITIS 174
GS E L+ +PGDA L+P P Y ++ K G E+V + +G
Sbjct: 77 GNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIH-GAEVVKVP-LDEDGQLDLED 134
Query: 175 ALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT 234
L K K V + +P+NP G ++ ++ ++ + + +V DE Y
Sbjct: 135 ILVAIDD-------KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDAL-VVVDEAY--G 184
Query: 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVS 294
F S S + ++ E +L ++ +LSK F + G R+G +N E ++
Sbjct: 185 EF-SGEPSTLPLLA--------EYPNLI----VLRTLSKAFGLAGLRIGYAIANAE-IID 230
Query: 295 AATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRC 352
A K+ F +S Q L D +++++ + + +E L GLK + G+
Sbjct: 231 ALNKVRAPFN-LSRLAQAAAIAALRDD----DFIEKTVEEINAERERLYDGLKKLPGLEV 285
Query: 353 LKSNA 357
S+A
Sbjct: 286 YPSDA 290
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 77/336 (22%), Positives = 139/336 (41%), Gaps = 37/336 (11%)
Query: 106 KFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165
+ P+ + LT G A E ++ LA P LLP P +P + + +EI
Sbjct: 94 QLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFH-HLEIRHFDLLP 152
Query: 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHI 225
G+ + + A+E A T+ ++I NP NP G+ +++ LN + ++ I +
Sbjct: 153 EKGWEVDLDAVE-AIADENTI-----AMVIINPGNPCGSVYSYEHLNKIAETARKLGILV 206
Query: 226 VSDEIYSGTVFDS----PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR 281
++DE+Y VF S P F SI+ + + S+SK + +PG+
Sbjct: 207 IADEVYGHIVFGSKPFVPMGLFASIVPVIT----------------LGSISKRWMIPGWG 250
Query: 282 VGMIYSNNE----RVVSAATKMSSFGLVSSQTQYLLSRMLSD--KKFTCNYMKENRKRLR 335
+G + + + ++ A + + + + + +K T ++ + LR
Sbjct: 251 LGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILR 310
Query: 336 KRKEMLVSGLK-VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP 394
LK + I C + G F + +LL+ E + E K+ E L I P
Sbjct: 311 AALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILP 370
Query: 395 GSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430
G + W RI FA + + +L+ L R+K F
Sbjct: 371 GVTVGLKN--WLRITFA-VEQSSLEDGLGRLKSFCG 403
|
Length = 409 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 95/371 (25%), Positives = 156/371 (42%), Gaps = 64/371 (17%)
Query: 84 HGFPDAKKELVKLMARI-----RGNKVKFDPNK-LVLTAGSTAANETLMFCLADPGDAFL 137
HG+ K + KL I R V DP +V T GS L+ + +PGD +
Sbjct: 65 HGY-SVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAI 123
Query: 138 LPTPYYP----GF--------DRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185
+P P YP F L++ E+ + F LE A +++
Sbjct: 124 VPDPAYPIHSQAFILAGGNVHKMPLEYNEDFEL------DEDQF---FENLEKALRESSP 174
Query: 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245
K K V++ P NP + L+ +K +R +I+SD Y+ FD + S
Sbjct: 175 ---KPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTP--S 229
Query: 246 IMEAVMDRNID-ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--- 301
I+E +++ ES Y+LSK ++M G+RVG + N+++V A K+ S
Sbjct: 230 ILEVEGAKDVAVES----------YTLSKSYNMAGWRVGFVVG-NKKLVGALKKIKSWLD 278
Query: 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFC 361
+G+ + Q + L + +C ++E R+ RKR+++L+ AG K A +F
Sbjct: 279 YGMFTP-IQVAATIALDGDQ-SC--VEEIRETYRKRRDVLIESFANAGWELQKPRASMFV 334
Query: 362 WVD----MRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEET 417
W RHL E K+++ E + +SPG + RI E
Sbjct: 335 WAKIPEPARHL-------GSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIE-NENR 386
Query: 418 LQVALQRIKVF 428
++ A + IK F
Sbjct: 387 IRQAARNIKKF 397
|
Length = 403 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 76/343 (22%), Positives = 149/343 (43%), Gaps = 51/343 (14%)
Query: 106 KFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165
+ + + LTAG A E +M LA PG LLP P YP ++ + G+E+
Sbjct: 114 ELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFS-GLEVRHFDLLP 172
Query: 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHI 225
G+ + + +E A T+ ++I NP+NP G+ +++ L + ++ I +
Sbjct: 173 ERGWEVDLEGVE-ALADENTV-----AMVIINPNNPCGSVYSYEHLAKIAETARKLGILV 226
Query: 226 VSDEIYSGTVFDS----PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR 281
++DE+Y F S P F + + + S+SK + +PG+R
Sbjct: 227 IADEVYDHLTFGSKPFVPMGVFGEVAPVLT----------------LGSISKRWVVPGWR 270
Query: 282 VGMIYSNNERVVSAATK----MSSFGLVSSQ----TQYLLSRMLSDKKFTCNYMKENRKR 333
+G I + + + TK + ++ +S+ Q + +++++ K + +
Sbjct: 271 LGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKE--EFFTKTLGL 328
Query: 334 LRKRKEMLVSGLKVAGIRCL----KSNAGLFCWV--DMRHLLVSNTFEAEKELWKKIIFE 387
L++ ++ +K I+C+ K +F V D+ L + + + + K+ E
Sbjct: 329 LKETADICYEKIK--EIKCITCPHKPEGSMFVMVKLDLSCL---SGIKDDMDFCCKLAKE 383
Query: 388 VGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430
+ + PGS+ W RI FA I +L+ L+R+K F
Sbjct: 384 ESVVVLPGSALGMKN--WLRITFA-IDPPSLEDGLERLKSFCL 423
|
Length = 430 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 59/282 (20%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-DPGDAFLLPTPY 142
G P+ ++ +V + R RG DP ++ G+ L L PGD ++P
Sbjct: 56 WGTPELREAIVDWLERRRGVP-GLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELA 114
Query: 143 YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL 202
YP ++ G + + A + + + + +P NP
Sbjct: 115 YPTYEV-------------------GALLAGATPVAADDPTELDPVGPDLIWLNSPGNPT 155
Query: 203 GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262
G ++ EL ++ +++ + + SDE Y ++ S ++D + D
Sbjct: 156 GRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVS-------ILDPRVCGGD--H 206
Query: 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERV--VSAATKMSSFGLVSSQTQYLLSRMLSDK 320
+ + V+SLSK ++ G+R G + + V + K + +V + Q + L D
Sbjct: 207 TGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKHAGL-MVPAPVQAAMVAALGDD 265
Query: 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCW 362
++ E + R R+ L L+ AG R S AGL+ W
Sbjct: 266 ----GHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLW 303
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 78/347 (22%), Positives = 146/347 (42%), Gaps = 60/347 (17%)
Query: 95 KLMARIRGNKVKFDP-NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR 153
KL N ++ + +V+TAGS A + + DPGD +L TPYY F+ ++
Sbjct: 77 KLQQD---NGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYY--FNHEM--- 128
Query: 154 PGVEI---VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQE 210
+ + PI + + +++ A+E A + K + ++ +P+NP G
Sbjct: 129 -AITMAGCQPILVPTDDNYQLQPEAIEQA------ITPKTRAIVTISPNNPTGVVYPEAL 181
Query: 211 LNHLINFSKSKRIHIVSDEIYSGTVFD-----SPSSSFISIMEAVMDRNIDESDDLWSRI 265
L + I+ +SDE Y +D SP S I S +
Sbjct: 182 LRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGS-------------IPGSGN----- 223
Query: 266 HIV--YSLSKDFSMPGFRVG-MIYSNNERVVSAATKMSSFGLVSSQ--TQYLLSRMLSDK 320
H + YSLSK + +R+G M+ + ++ A K+ L+ +QY L
Sbjct: 224 HTISLYSLSKAYGFASWRIGYMVIPIH--LLEAIKKIQDTILICPPVVSQYAALGALQVG 281
Query: 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC--LKSNAGLFCWVDMRHLLVSNTFEAEK 378
K +Y +++ + + +++L+ L RC +N +C L NT +
Sbjct: 282 K---SYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYC------FLKVNTDLNDF 332
Query: 379 ELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRI 425
EL K++I E + + PG++ + RI + + + T + ++R+
Sbjct: 333 ELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERL 379
|
Length = 389 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 67.1 bits (163), Expect = 5e-12
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 27/198 (13%)
Query: 106 KFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165
K P + LTAG E + LA P LLP P +P +D + G+E+
Sbjct: 128 KLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYS-GLEVRKFDLLP 186
Query: 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHI 225
+ I + +E A T+ +++ NP+NP G +H L + ++ I +
Sbjct: 187 EKEWEIDLEGIE-AIADENTV-----AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMV 240
Query: 226 VSDEIYSGTVF-DSPSSS---FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR 281
+SDE+Y T+F D+P S F SI+ + + +SK + +PG++
Sbjct: 241 ISDEVYDRTIFGDNPFVSMGKFASIVPVLT----------------LAGISKGWVVPGWK 284
Query: 282 VGMIYSNNERVVSAATKM 299
+G I N+ V TK+
Sbjct: 285 IGWIALNDPEGVFETTKV 302
|
Length = 462 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-12
Identities = 84/347 (24%), Positives = 143/347 (41%), Gaps = 74/347 (21%)
Query: 105 VKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPG-----VEI 158
+ DP V+ T+G+T A + L +PGD +L P Y + ++ R G V +
Sbjct: 82 LDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIR-RAGGVPRLVRL 140
Query: 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFS 218
P H +R+ +AL A+ + + K VL+ NP NP G +EL L F
Sbjct: 141 EPPH------WRLPRAALAAAF------SPRTKAVLLNNPLNPAGKVFPREELALLAEFC 188
Query: 219 KSKRIHIVSDEIYSGTVFDSPSSSFISIM--EAVMDRNIDESDDLWSRIHIVYSLSKDFS 276
+ + DE++ VFD I +M + +R + +I S K FS
Sbjct: 189 QRHDAVAICDEVWEHVVFD--GRRHIPLMTLPGMRERTV--------KIG---SAGKIFS 235
Query: 277 MPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTC------------ 324
+ G++VG V +A + +++ Q+L FT
Sbjct: 236 LTGWKVGF-------VCAAPPLLR---VLAKAHQFL--------TFTTPPNLQAAVAYGL 277
Query: 325 ----NYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKEL 380
+Y + R L + ++ L +GL+ G L S F VD+ L ++ A
Sbjct: 278 GKPDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLAEDDVA---F 334
Query: 381 WKKIIFEVGLNISPGSSCHCNEP--GWFRICFANITEETLQVALQRI 425
++++ E G+ P S+ + +P R CFA + TL A++R+
Sbjct: 335 CRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERL 380
|
Length = 387 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-11
Identities = 82/359 (22%), Positives = 154/359 (42%), Gaps = 43/359 (11%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G P A++ + + ++R K+ D + +T+G T A + + LA PG LLP P +P
Sbjct: 74 GLPQARRAIAEYLSRDLPYKLSLD--DVFITSGCTQAIDVALSMLARPGANILLPRPGFP 131
Query: 145 GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGT 204
++ +R +E+ + G+ + + A+E A T+ L +I NP NP G
Sbjct: 132 IYELCAAFR-HLEVRYVDLLPEKGWEVDLDAVE-ALADQNTVAL-----VIINPGNPCGN 184
Query: 205 AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS----PSSSFISIMEAVMDRNIDESDD 260
++Q L + ++ +I +++DE+Y F S P F SI+
Sbjct: 185 VYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVP------------ 232
Query: 261 LWSRIHIVYSLSKDFSMPGFRVGMIYSN-------NERVVSAATK-MSSFGLVSSQTQYL 312
+ + SLSK + +PG+R+G + + ++V K G ++ Q
Sbjct: 233 ----VLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAA 288
Query: 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKSNAGLFCWVDMRHLLVS 371
+ +L ++ ++ K+ L++ ++ +K + I C G + +L +
Sbjct: 289 VPTIL--EQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLL 346
Query: 372 NTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430
+ + K+ E + I PG++ W RI FA +L+ AL RIK F
Sbjct: 347 EDISDDIDFCFKLAREESVIILPGTAVGLKN--WLRITFA-ADPSSLEEALGRIKSFYL 402
|
Length = 409 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 80/353 (22%), Positives = 148/353 (41%), Gaps = 50/353 (14%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETL---MFCLADPGDAFLLPTP 141
G ++ L + R+ G ++DP V S A+E L + L PGD +
Sbjct: 67 GIAALREALAEKTERLYG--ARYDPASEVTVIAS--ASEGLYAAISALVHPGDEVIY--- 119
Query: 142 YYPGFDRDLKWRPGVEI-----VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT 196
+ P FD + P V + V I S FR+ N + A + + + +++
Sbjct: 120 FEPSFD---SYAPIVRLQGATPVAIKLSP-EDFRV------NWDEVAAAITPRTRMIIVN 169
Query: 197 NPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNID 256
P NP T + +L L +++ I I+SDE+Y VFD ++ + +R++
Sbjct: 170 TPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSV- 228
Query: 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT--QYLLS 314
IV S K + + G+RVG + E ++ K+ F + S+ T Q+ +
Sbjct: 229 ----------IVSSFGKSYHVTGWRVGYCLAPAE-LMDEIRKVHQFMVFSADTPMQHAFA 277
Query: 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTF 374
L++ +Y+ RKR ++L L + L S F RH S+
Sbjct: 278 EALAEPA---SYLGLGAFYQRKR-DLLARELAGSRFELLPSEGSFFMLARFRHF--SD-- 329
Query: 375 EAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETLQVALQRI 425
E++ + ++I + + P S+ + + + G R+ F+ + TL +R+
Sbjct: 330 ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRL 381
|
Length = 384 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 5e-11
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Query: 108 DPNKLVLTAGSTAANETLM-FCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS 166
DPN + LT G++ A +M + D L P P YP + + G +VP + +
Sbjct: 190 DPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 248
Query: 167 NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIV 226
G+ + IS L+ + A++ + V+ +++ NP NP G + + ++ F K + + ++
Sbjct: 249 TGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLL 308
Query: 227 SDEIYSGTVF 236
+DE+Y V+
Sbjct: 309 ADEVYQENVY 318
|
Length = 534 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 34/205 (16%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
GFP+ ++ ++K + D ++ ++TAG+T + +M PGD + P P Y
Sbjct: 67 GFPELRELILK--------DLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYL 118
Query: 145 GFDRDLKWRPGVEI--VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL 202
D R G E+ VPI+ S +++T ++ + N ++ + + +P NPL
Sbjct: 119 IIDNFAS-RFGAEVIEVPIY-SEECNYKLTPELVKENMDE----NTRL--IYLIDPLNPL 170
Query: 203 GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262
G++ T +E+ ++ ++ D Y + ++ E + +
Sbjct: 171 GSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAA-----EYAPEHTVT------ 219
Query: 263 SRIHIVYSLSKDFSMPGFRVGMIYS 287
YS SK F M G R+G + +
Sbjct: 220 -----SYSFSKIFGMAGLRIGAVVA 239
|
Length = 380 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 75/345 (21%), Positives = 131/345 (37%), Gaps = 73/345 (21%)
Query: 105 VKFDPNKLV-LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEI---VP 160
++D + + +TAG+T A + L PGD ++ P Y + P +E+
Sbjct: 86 RQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYA------PAIELAGGRA 139
Query: 161 IHCS-SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSK 219
+ + FR+ A ++ + + +++ P NP GT + ++ L
Sbjct: 140 VRVALQPPDFRVDWQRFAAA------ISPRTRLIILNTPHNPSGTVWSAADMRALWQLIA 193
Query: 220 SKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP 278
I+++SDE+Y VFD + +S + E L R +V S K + +
Sbjct: 194 GTDIYVLSDEVYEHIVFDGAGHASVLRHPE------------LRERAFVVSSFGKTYHVT 241
Query: 279 GFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCN---------YMKE 329
G++VG Y V+ A + F V QY FT N Y++
Sbjct: 242 GWKVG--Y-----CVAPAALSAEFRKVH---QYNT--------FTVNTPAQLALADYLRA 283
Query: 330 NRKRL-------RKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWK 382
+ + +++ + L + + L F VD +S+ + E W
Sbjct: 284 EPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVDYSA--ISDLDDVEFCQWL 341
Query: 383 KIIFEVGLNISPGSSCHCNEP---GWFRICFANITEETLQVALQR 424
E G+ P S +P R+CFA EETL A +R
Sbjct: 342 TR--EHGVAAIP-LSVFYADPFPHRLVRLCFAK-QEETLDAAAER 382
|
Length = 386 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 64/213 (30%), Positives = 90/213 (42%), Gaps = 57/213 (26%)
Query: 93 LVKLMARIRGNKVKFDPNKLVLTAGSTAA----------NETLMFCLADPGD--AFLLP- 139
L + M R K +FD L G TAA N L GD A + P
Sbjct: 148 LRQEMCGGRPPKGEFD---LFAVEGGTAAMCYIFDSLKENGLL-----KAGDKIALMTPI 199
Query: 140 -TPYY--PGFDR-DLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195
TPY P R DL E+V I+ N ++ S LE + + +K + +
Sbjct: 200 FTPYLEIPELPRYDL------EVVHINADEENEWQYPDSELE------KLRDPSIKALFL 247
Query: 196 TNPSNPLGTAMTHQELNHLINFSKSKR--IHIVSDEIYSGTVFDSPSSSFISIMEAVMDR 253
NPSNP AM+ + L + + KR + I++D++Y GT D F S+ AV+
Sbjct: 248 VNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVY-GTFVD----DFRSLF-AVLPY 301
Query: 254 NIDESDDLWSRIHI-VYSLSKDFSMPGFRVGMI 285
N I VYS SK F G+R+G+I
Sbjct: 302 NT-----------ILVYSFSKYFGATGWRLGVI 323
|
Length = 527 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 58/253 (22%), Positives = 113/253 (44%), Gaps = 39/253 (15%)
Query: 126 MFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIV---PIH--CSSSNGFRITISALENAY 180
M L D GD L+P+P YP W V + +H C + + I + +
Sbjct: 225 MSALLDDGDEVLIPSPDYP------LWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRS-- 276
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
+ + K ++I NP+NP G + L +++ ++ ++ I SDEIY V D
Sbjct: 277 ----KITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLE 332
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYS-LSKDFSMPGFRVG-MIYSNNERV----VS 294
+ I+ + + DL+ + +S LSK + G+R+G MI S N+R+ +
Sbjct: 333 HTSIASL----------APDLFC---VTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIE 379
Query: 295 AATKMSSFGLVSS-QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRC 352
+++ L S+ Q ++ L + +Y+ R+ +++E++ + L + GI
Sbjct: 380 GLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQRELVYNALNAIPGISA 438
Query: 353 LKSNAGLFCWVDM 365
+K A + + +
Sbjct: 439 VKPKAAFYIFPKI 451
|
Length = 517 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 44/216 (20%), Positives = 98/216 (45%), Gaps = 36/216 (16%)
Query: 137 LLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT 196
L+ P + ++R LK EI + F LE + ++ V +
Sbjct: 97 LILAPTFAEYERALK-AFDAEIEYAELTEETNFAANEIVLE-------EIKEEIDLVFLC 148
Query: 197 NPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNID 256
NP+NP G ++ +E+ +++ + + I+++ DE + + ++ + S I+ ++
Sbjct: 149 NPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMIN--------YLE 200
Query: 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS------SFGLVSSQTQ 310
+L I+ + +K F++PG R+G ++N+ + +M +F ++ QT
Sbjct: 201 NFKNLI----IIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQT- 255
Query: 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346
+L DK Y+K+ + +++ K+ L +GL
Sbjct: 256 -----LLDDK----EYIKKTIQWIKEEKDFLYNGLS 282
|
Length = 354 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 96 LMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPG 155
+ R RG D + ++ T GS+ A ++ L PGD ++ P Y G
Sbjct: 60 IADRWRGG----DAHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYHSLSHLAVAT-G 114
Query: 156 VEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLI 215
E+ P + GFR + AL L + + V++ P NP G ++T +EL+ L+
Sbjct: 115 CEVRPWPLLAVRGFRPDLDALR------ALLTPRTRAVVVNFPHNPTGASVTPRELDELL 168
Query: 216 NFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF 275
+ ++ D ++ V D+P S A+ DR I +LSK F
Sbjct: 169 ERAARSGAVLLWDNAFADLVHDAPPLPDPS---ALYDRVISFG-----------TLSKAF 214
Query: 276 SMPGFRVG 283
+PG RVG
Sbjct: 215 GLPGLRVG 222
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEA 249
+ + +PSNP G + L ++ +++ + + SDE Y +D+ +SI++
Sbjct: 149 PALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEP---VSILDP 205
Query: 250 VMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL-VSSQ 308
+ + V+SLSK ++ G+R G + + V G+ V +
Sbjct: 206 ------RVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKHAGMMVPAP 259
Query: 309 TQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF-------- 360
Q + L D +++E R+R +R+ +L L+ AG R S AGL+
Sbjct: 260 VQAAMVAALGDDA----HVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLWATRGED 315
Query: 361 CWVDMRHL 368
CW + L
Sbjct: 316 CWDTVAWL 323
|
Length = 364 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 69/320 (21%), Positives = 115/320 (35%), Gaps = 57/320 (17%)
Query: 54 ESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113
E L + A + + R AL Y + + +L L A G ++
Sbjct: 52 ECPLGPSPAARD------AAARSAALSGRYD--LELEDDLRTLFAAQEGLPADH----VM 99
Query: 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEI--VPIHCSSSNGFRI 171
AGS+ + P + P Y R + G + VP+
Sbjct: 100 AYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQ-GAPVAKVPLR----ADGAH 154
Query: 172 TISALENAYQQAQTLNLKVKGVL-ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEI 230
+ A+ A A G++ I NP+NP GT ++ L+ +K ++ DE
Sbjct: 155 DVKAMLAADPNA--------GLIYICNPNNPTGTVTPRADIEWLLA-NKPAGSVLLVDEA 205
Query: 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY-SLSKDFSMPGFRVGMIYSNN 289
Y D+P S+++ V R DL IV + SK + M G R+G+ +
Sbjct: 206 YI-HFSDAP-----SVVDLVAQR-----KDL-----IVLRTFSKLYGMAGMRLGLAAARP 249
Query: 290 ERVVSAATKMSSFGL-VSSQTQYLLSRM-LSDKKFTCNYMKENRKRLRKRKEMLVSGLKV 347
+ + K++ FG L D K + + R +E ++ LK
Sbjct: 250 DLL----AKLARFGHNPLPVPAAAAGLASLRDPKL----VPQRRAENAAVREDTIAWLKK 301
Query: 348 AGIRCLKSNAGLFCWVDMRH 367
G +C S A F VD++
Sbjct: 302 KGYKCTPSQANCFM-VDVKR 320
|
Length = 370 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 58/318 (18%), Positives = 110/318 (34%), Gaps = 52/318 (16%)
Query: 108 DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSN 167
++ G+ A L LA PG L+ P Y + R + G E+V +
Sbjct: 63 PAASVLPVNGAQEAIYLLPRLLA-PGRV-LVLAPTYSEYARAWR-AAGHEVVELP----- 114
Query: 168 GFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVS 227
+ L A ++A +++ NP+NP G + + L L +++ +V
Sbjct: 115 ----DLDRLPAALEEA-------DLLVVCNPNNPTGRLIPPETLLALAARLRARGGWLVV 163
Query: 228 DEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS 287
DE + P +S + ++ SL+K F + G R+G + +
Sbjct: 164 DEAFIDFT---PDASLAPQAARF------------PGLVVLRSLTKFFGLAGLRLGFVVA 208
Query: 288 NNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL-K 346
+ + + + V+ L+D + R RL + L + L +
Sbjct: 209 HPALIARLREALGPWT-VNGPALAAGRAALADT----AWQAATRARLAAERARLAALLAR 263
Query: 347 VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWF 406
+ G+R + A LF V L + + G+ I + +P +
Sbjct: 264 LGGLRVVGGTA-LFLLVR---------TPDAAALHEALA-RRGILIRDFDNFPGLDPRYL 312
Query: 407 RIC-FANITEETLQVALQ 423
R + + L AL
Sbjct: 313 RFALPTDEENDRLLEALA 330
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 108 DPNKLVLTA-GSTAANETLMFCLADPGDA--FLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164
DP + VL G+ A + +PG A ++P P+Y ++ G E ++C+
Sbjct: 88 DPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYE-GAALLAGAEPYFLNCT 146
Query: 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIH 224
+ NGF A+ + + + + + + +P NP G ++ L LI +
Sbjct: 147 AENGFLPDFDAVPESVWR------RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFI 200
Query: 225 IVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGM 284
I SDE YS FD + +++A D+ + R + +SLSK ++PG R G
Sbjct: 201 IASDECYSELYFDE-GNPPAGLLQAAAQLGRDD----FRRCLVFHSLSKRSNLPGLRSGF 255
Query: 285 I 285
+
Sbjct: 256 V 256
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 29/189 (15%)
Query: 104 KVKFDPNKLVLTAGSTAANETL----MFCLAD---PGDAFLLPTPYYPGFDRDLKWRPGV 156
K++ N+L+ T G+ E L F L D P A+ P P+Y ++
Sbjct: 78 KIELKENELIPTFGT---REVLFNFPQFVLFDKQNPTIAY--PNPFYQIYEGAAIA-SRA 131
Query: 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLIN 216
+++ + + N F +++ E Q ++L V++ +P+NP G ++ +EL +
Sbjct: 132 KVLLMPLTKENDFTPSLNEKE-----LQEVDL----VILNSPNNPTGRTLSLEELIEWVK 182
Query: 217 FSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS 276
+ +++DE YS ++P S ++EA + + + + ++ S+SK S
Sbjct: 183 LALKHDFILINDECYSEIYENTPPPS---LLEASILVGNES----FKNVLVINSISKRSS 235
Query: 277 MPGFRVGMI 285
PG R G I
Sbjct: 236 APGLRSGFI 244
|
Length = 374 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 75/341 (21%), Positives = 128/341 (37%), Gaps = 57/341 (16%)
Query: 105 VKFDPNKLVLT-AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163
+ DP VL GS L + +PGD LL P YP + + G +I P+
Sbjct: 87 LAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGV-YLAGGQIYPMPL 145
Query: 164 SSSNGFRITISALENAY-QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR 222
+ N F + + QA+ + L + P NP + F +
Sbjct: 146 RAENDFLPVFADIPTEVLAQARLMVL-------SYPHNPTTAIAPLSFFQEAVAFCQQHD 198
Query: 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV 282
+ +V D Y VFD SI++A D S + ++LSK ++M GFR+
Sbjct: 199 LVLVHDFPYVDLVFDG-EVEPPSILQA--DPEKSVSIEF-------FTLSKSYNMGGFRI 248
Query: 283 GMIYSNNE-----RVVSAATKMSSF---------GLVSSQTQYLLSRMLSDKKFTCNYMK 328
G N + R V A + + L Q ++
Sbjct: 249 GFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQA----------------TVQ 292
Query: 329 ENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEV 388
+ + R+R++ ++ L G A ++ W + N+ E +L + +
Sbjct: 293 QTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPWQGNSVEFCTQL----VAQT 348
Query: 389 GLNISPGSSCHCNEPGWFRICFANITE-ETLQVALQRIKVF 428
G+ SPGS + G+ R FA + + + L+ A++RI F
Sbjct: 349 GVAASPGSGFGKSGEGYVR--FALVHDPDILEEAVERIAAF 387
|
Length = 388 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 20/105 (19%)
Query: 189 KVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR--IHIVSDEIYSGTVFDSPSSSFISI 246
+K + + NPSNP AM+ + + +++ + R + I++D++Y GT D F S+
Sbjct: 240 SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVY-GTFVD----DFRSL 294
Query: 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMI--YSNN 289
+ I VYS SK F G+R+G I + +N
Sbjct: 295 FAELPYNTI-----------GVYSFSKYFGATGWRLGTIALHKDN 328
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 33/203 (16%)
Query: 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTP-- 141
H +P K L A + ++ P ++ L G A + L + DPGD L+P P
Sbjct: 60 HSYP--KASHADLTAAL-ADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGF 116
Query: 142 -YYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSN 200
YY R + G E+ S ++ F T + +AY + V +T+P N
Sbjct: 117 AYYGMSAR---YHHG-EVREYPVSKADDFEQTADTVLDAYDGERI-------VYLTSPHN 165
Query: 201 PLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260
P G+ + E+ L + + + +V DE Y G + PS+ +++ ++E DD
Sbjct: 166 PTGSEIPLDEVEALAERTDEETL-VVVDEAY-GEFAERPSA--VAL--------VEERDD 213
Query: 261 LWSRIHIVYSLSKDFSMPGFRVG 283
+ ++ + SK + + G R+G
Sbjct: 214 ----VAVLRTFSKAYGLAGLRLG 232
|
Length = 357 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 69/285 (24%), Positives = 111/285 (38%), Gaps = 69/285 (24%)
Query: 34 NPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKEL 93
NP+ I +M L ++L S +A E N Y G P K L
Sbjct: 39 NPARIPEMDDYFQDLLAEMLAS-----GKATEALCN-------------YDG-PQGKAVL 79
Query: 94 VKLMARIRGNKVKFD--PNKLVLTAGSTAANETLMFCLAD-------PGD--AFLLP-TP 141
+ +A++ + ++ + LT GS ++ F L + G LLP P
Sbjct: 80 IDALAKMLRREYGWNITAQNIALTNGS----QSAFFYLFNLFAGRRSDGTEKKILLPLAP 135
Query: 142 YYPGF-----DRDL--KWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194
Y G+ + DL +P +E++P + + L + +
Sbjct: 136 EYIGYADAGLEEDLFVSAKPNIELLPAG---QFKYHVDFEHLH--------IGESTGAIC 184
Query: 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRN 254
++ P+NP G +T +EL L ++ I ++ D Y G F P F S + + N
Sbjct: 185 VSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAY-GVPF--PGIIF-SDATPLWNEN 240
Query: 255 IDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM 299
I I SLSK +PG R G+I + NE+V+ A T M
Sbjct: 241 I---------IL-CMSLSK-LGLPGSRCGIIIA-NEKVIQAITNM 273
|
Length = 417 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 6e-06
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 44/255 (17%)
Query: 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNG 168
P + + GS +M + GD + P P + + K VEI P+
Sbjct: 76 PTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEI-PVKLKEDYT 134
Query: 169 FRIT--ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIV 226
+ + I +E YQ K V + NP+NP G+ + +++ +I KS+ I +V
Sbjct: 135 YDVGSFIKVIEK-YQP--------KLVFLCNPNNPTGSVIEREDIIKII--EKSRGIVVV 183
Query: 227 SD---EIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVG 283
+ E Y T+ D I+E ++L ++ +LSK F + G RVG
Sbjct: 184 DEAYFEFYGNTIVDV----------------INEFENLI----VLRTLSKAFGLAGLRVG 223
Query: 284 MIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343
+N + S + + S LS++++ K +KE + +E L+
Sbjct: 224 YAVANENILKYLNLVKSPYNINS------LSQVIALKVLRTGVLKERVNYILNERERLIK 277
Query: 344 GL-KVAGIRCLKSNA 357
L K+ GI+ S
Sbjct: 278 ELSKIPGIKVYPSKT 292
|
Length = 351 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 52/182 (28%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 114 LTAG-STAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRIT 172
LT G S A+ +F D GD LLP + + R G EIV +G
Sbjct: 78 LTHGLSLVAD---LF--VDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDG-GFD 131
Query: 173 ISALENAYQQAQTLNLKVKGVLITN-PSNPLGTAMTHQELNHLINFSKS-----KRIHIV 226
AL+ A Q A K K ++I N P+NP G T +E ++ K ++ V
Sbjct: 132 TDALKEALQAAYN---KGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAV 188
Query: 227 SDEIYSGTVF-DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY--SLSKDFSMPGFRVG 283
D+ Y G + DS S + + +L S I V +K+ + GFRVG
Sbjct: 189 VDDAYFGLFYEDSYKESLFAALA-----------NLHSNILAVKLDGATKEEFVWGFRVG 237
Query: 284 MI 285
I
Sbjct: 238 FI 239
|
Length = 388 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 72/348 (20%), Positives = 133/348 (38%), Gaps = 77/348 (22%)
Query: 82 DYHGFPDAKKELVKLMARIRGNKV--KFDPNKLVLTAGSTAANETL--MFCLADPGDAF- 136
+Y G P K EL++ +A + + P + LT GS +A L +F +
Sbjct: 69 NYDG-PQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLK 127
Query: 137 --LLP-TPYYPGF-------DRDLKWRPGVEIVPIHCSSSNG---FRITISALENAYQQA 183
L P P Y G+ D + +RP +E++P G + + L
Sbjct: 128 KILFPLAPEYIGYADAGLEEDLFVSYRPNIELLP------EGQFKYHVDFEHLH------ 175
Query: 184 QTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243
++ + ++ P+NP G +T +EL L ++ I ++ D Y G F P F
Sbjct: 176 --IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAY-GPPF--PGIIF 230
Query: 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM---- 299
+ + NI I SLSK +PG R G++ + +E ++ A + M
Sbjct: 231 SE-ATPLWNPNI---------IL-CMSLSK-LGLPGVRCGIVIA-DEEIIEALSNMNGII 277
Query: 300 ----SSFGLVSSQTQYLLSRMLSDKKFT--CNYMKENRKRLRKRKEMLVSGLKVA--GIR 351
G + + M+ R R++ ++ ++ L+
Sbjct: 278 SLAPGRLG------PAIAAEMIESGDLLRLSE--TVIRPFYRQKVQLAIALLRRYLPDEP 329
Query: 352 CL--KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397
CL K +F W+ + L ++ EL++++ G+ + PG
Sbjct: 330 CLIHKPEGAIFLWLWFKDLPITTE-----ELYQRLK-ARGVLVVPGHY 371
|
Length = 416 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISI 246
N + G+L+ NP NP G + L +++ ++ + I+ DEIY+ V++ + +S
Sbjct: 169 NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSE 228
Query: 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNN-------ERVVSA--AT 297
+ I + + + +SK+ PG R G I N ++ +++
Sbjct: 229 V-------IGDVPGIALK-----GISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNA 276
Query: 298 KMSSFGLVSSQT--QYLLSRMLSDKKFTCNYMKENRKRLRKR 337
KM V S T Q + R++S ++ NY+KE KR KR
Sbjct: 277 KMIE---VCSTTLPQMAIPRIMSHPEYK-NYLKERNKRYEKR 314
|
Length = 433 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 26/212 (12%)
Query: 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKLVLTAGSTAANETLMFCLADPGDAFLL 138
+ +Y G D ++ L +A G V D ++L++T G+ A + GD +
Sbjct: 74 YTEYRGDADIRELLAARLAAFTGAPV--DAADELIITPGTQGALFLAVAATVARGDKVAI 131
Query: 139 PTPYYPGFD-RDLKWRPGVEIVPI---HCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194
P Y F R L E+VP+ + S+ + + LE A++ V+ L
Sbjct: 132 VQPDY--FANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG------VRVFL 183
Query: 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRN 254
+NP+NP G + +E+ + ++ ++ D++YS ++D +S+ + +D
Sbjct: 184 FSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYD--GTSYTHLRALPIDPE 241
Query: 255 IDESDDLWSRIHIVYSLSKDFSMPGFRVGMIY 286
+ + SK S+ G+R+G+ +
Sbjct: 242 ---------NVITIMGPSKTESLSGYRLGVAF 264
|
Length = 405 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 52/180 (28%)
Query: 129 LADPGDAFLLPTPYYPGFDRDLKWRPGVEIV---PIH--CSSSNGFRITISALENAYQQA 183
L + GD L+P P YP L W V + P+H C G+ + + +
Sbjct: 115 LLNNGDEVLVPAPDYP-----L-WTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRS----- 163
Query: 184 QTLNLKVKGVLITNPSNPLGTAMTHQEL----------NHLINFSKSKRIHIVSDEIYSG 233
+ + K ++I NP+NP G A+ +EL ++LI I +DEIY
Sbjct: 164 -KITPRTKAIVIINPNNPTG-AVYSKELLEEIVEIARQHNLI---------IFADEIYDK 212
Query: 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS-LSKDFSMPGFRVG-MIYSNNER 291
++D + ISI A + + DL + + ++ LSK + + GFRVG M+ S ++
Sbjct: 213 ILYD--GAVHISI--ASL------APDL---LCVTFNGLSKAYRVAGFRVGWMVLSGPKK 259
|
Length = 404 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 26/187 (13%)
Query: 109 PNKLVLTAGSTAANETLMFCLADPG-DAFLLPTPYYPGFD--RDLKWRPGVEIVPIHCSS 165
P +L++ GS A + L+ L PG DA L+ P + + L+ P VE VP+
Sbjct: 76 PEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVE-VPL-VDG 133
Query: 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHI 225
++GF + A+ A A N K+ V + +PSNP G+A+ ++ + + K + +
Sbjct: 134 ADGFHADVPAIVAA---ALASNAKL--VFLCSPSNPAGSAIALDQIERALQALQGKAL-V 187
Query: 226 VSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMI 285
V DE Y G D PS+ + ++ + + ++ +LSK ++ R+G +
Sbjct: 188 VVDEAY-GEFSDVPSA--VGLLAR------------YDNLAVLRTLSKAHALAAARIGSL 232
Query: 286 YSNNERV 292
+N E +
Sbjct: 233 IANAELI 239
|
Length = 364 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 146 FDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTA 205
D D ++ +I + C++ N F I L + + + +P+NP GT
Sbjct: 144 LDDDGRYS---KITYLPCTAENNF---IPELPE--------EPHIDIIYLCSPNNPTGTV 189
Query: 206 MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS--PSSSF 243
+T ++L L++++ I+ D YS + D P S F
Sbjct: 190 LTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIF 229
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 58/230 (25%)
Query: 123 ETLMFCLADPGDAFLLPTP---YYPGFDRDLKWRPGVEIV-------PIHCSSSNGFRIT 172
+TLM DPGD ++PTP YY EI P++ F +
Sbjct: 101 DTLMRTFIDPGDEVIIPTPTFSYY-------------EISAKAHGAKPVYAKREEDFSLD 147
Query: 173 ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232
+ ++ NA + K K + + P+NP G + +++ ++ S + DE Y
Sbjct: 148 VDSVLNA------ITEKTKVIFLCTPNNPTGNLIPEEDIRKILE---STDALVFVDEAY- 197
Query: 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV 292
+ E E D+L I + SK F + G R+G + +
Sbjct: 198 -----------VEFAEYDYTPLALEYDNLI----IGRTFSKVFGLAGLRIGYGFVPEWLI 242
Query: 293 V---SAATKMSSFGLVSSQTQYLLSRMLSDKKF---TCNYMKENRKRLRK 336
A T S ++ +Q LSDK++ + + ++R+ L
Sbjct: 243 DYYMRAKTPFS----LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYN 288
|
Length = 361 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 155 GVEIVPIHCSSSNGFRITISAL-ENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNH 213
G E ++C +N F A+ + + Q L + +P NP G + +
Sbjct: 138 GAEPYFLNCDPANNFAPDFDAVPAEVWARTQLL-------FVCSPGNPTGAVLPLDDWKK 190
Query: 214 LINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAV--MDRNIDESDDLWSRIHIVYSL 271
L S I SDE YS FD + + ++EA + R D + R+ + +SL
Sbjct: 191 LFALSDRYGFVIASDECYSEIYFDEAAPP-LGLLEAAAELGR------DDFKRLVVFHSL 243
Query: 272 SKDFSMPGFRVGMI 285
SK ++PG R G +
Sbjct: 244 SKRSNVPGLRSGFV 257
|
Length = 396 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 125 LMFCLAD---PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181
+F + P A ++ TP + + R L+ G EI ++G+++T + LE
Sbjct: 84 SIFAVVSGLKPRRAMIV-TPGFAEYRRALQQ-VGCEIRRYSLREADGWQLTDAILE---- 137
Query: 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241
L + + + P+NP G Q L + KS I ++ DE + + D
Sbjct: 138 ---ALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETG- 193
Query: 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA 295
FI + + ++ SL+K +++PG R+G + ++++ V+
Sbjct: 194 -FIPQLAD------------NPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVAR 234
|
Length = 356 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 20/157 (12%)
Query: 183 AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242
+ ++ K V I NP+NP GT + ++L I S+ IV DE Y
Sbjct: 145 SSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIE-GISENTLIVIDEAY----------- 192
Query: 243 FISIMEAVMDRNIDESDDLWSR---IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM 299
E V ++ E+ L + I ++ + SK + + FRVG + E +
Sbjct: 193 ----YEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVR 248
Query: 300 SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRK 336
F VSS Q + D +F ++ N + LR+
Sbjct: 249 LPFN-VSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQ 284
|
Length = 366 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 31/173 (17%)
Query: 167 NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIV 226
F I + + A V I +P+NP G Q ++ ++ + +V
Sbjct: 125 EDFTIDGERIAEKAKNASA-------VFICSPNNPTGNL---QPEEEILKVLETGKP-VV 173
Query: 227 SDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIY 286
DE Y+ + S I IDE +L ++ + SK F + G R G
Sbjct: 174 LDEAYA----EFSGKSLI--------GLIDEYPNLI----LLRTFSKAFGLAGIRAGYAI 217
Query: 287 SNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKF---TCNYMKENRKRLRK 336
+N E + + F ++ T ++ L +Y+ + R+R+R+
Sbjct: 218 ANEEIIDALYRIKPPFS-LNILTMKIVRLALDHYDLIEERIDYIIKERERVRR 269
|
Length = 337 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.97 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.97 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.96 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.96 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.96 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.96 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.95 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.95 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.95 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.95 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.95 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.95 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.95 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.95 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.95 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.95 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.94 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.94 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.94 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.94 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.94 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.93 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.93 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.93 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.93 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.93 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.93 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.93 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.93 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.92 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.92 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.92 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.92 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.92 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.92 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.92 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.92 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.92 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.91 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.91 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.91 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.91 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.9 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.9 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.9 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.9 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.9 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.9 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.9 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.89 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.89 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.89 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.89 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.89 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.89 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.89 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.89 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.89 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.89 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.88 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.88 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.88 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.88 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.88 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.88 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.87 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.87 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.87 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.87 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.87 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.87 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.87 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.86 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.86 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.86 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.86 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.85 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.85 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.85 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.85 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.85 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.85 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.85 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.85 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.85 | |
| PLN02651 | 364 | cysteine desulfurase | 99.84 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.84 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.84 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.84 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.84 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.84 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.83 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.83 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.83 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.83 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.83 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.83 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.82 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.82 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.82 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.82 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.82 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.82 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.81 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.81 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.8 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.8 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.8 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.8 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.79 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.79 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.79 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.78 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.78 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.78 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.77 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.77 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.77 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.77 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.76 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.75 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.74 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.74 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.74 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.73 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.73 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.73 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.72 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.72 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.72 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.71 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.7 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.7 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.7 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.69 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.69 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.69 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.69 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.69 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.68 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.68 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.68 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.68 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.68 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.68 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.67 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.67 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.66 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.66 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.66 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.65 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.65 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.64 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.64 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.64 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.63 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.63 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.63 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.62 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.62 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.62 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.61 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.61 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.61 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.61 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.6 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.6 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.6 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.6 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.6 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.6 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.6 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.6 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.59 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.59 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.59 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.59 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.58 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.58 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.58 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.58 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.58 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.58 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.57 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.57 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.56 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.55 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.55 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.55 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.55 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.55 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.54 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.54 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.52 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.52 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.52 | |
| PLN02263 | 470 | serine decarboxylase | 99.51 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.51 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.51 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.51 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.51 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.5 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.49 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.44 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.43 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.43 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.43 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.39 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.39 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.39 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.39 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.36 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.36 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.35 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.35 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.34 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.33 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.31 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.29 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.23 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.23 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.21 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.17 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.14 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.13 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.13 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.07 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.06 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.01 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.97 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.9 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.83 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.81 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.73 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.64 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.55 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.52 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.4 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.37 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.34 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.28 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.25 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.12 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.09 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.06 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.69 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.48 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.13 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.89 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 96.35 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 96.2 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 84.12 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 82.03 |
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-73 Score=525.65 Aligned_cols=423 Identities=67% Similarity=1.142 Sum_probs=405.8
Q ss_pred CcccccccccCCCCCccchhhhhhhcCCCCCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccC
Q 037587 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALF 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 80 (464)
+||+++.++-|.++|.||..|..++.++|++.+||.|+|+|+.+||.++.+++.+++.+.+++..++.++...+.++..|
T Consensus 38 ~lS~~~~~~~~~e~S~yf~g~~~y~~npy~~~~Np~GiIQmGlaENqlc~DL~~~wl~k~~~~~~~~~eg~~~f~~la~f 117 (471)
T KOG0256|consen 38 LLSSKAVDDKHGEDSSYFYGWKAYEKNPYDPIKNPLGIIQMGLAENQLCFDLIESWLSKNPEASNCTREGQSSFDELAMF 117 (471)
T ss_pred hcccccccccccccchHHHHHHhcccCCCCCCCCchHHHHhhhhhhHHHHHHHHHHHHhChhhhhcccccccchhhHhhc
Confidence 48999999999999999999999999999999999999999999999999999999999999888888888888899999
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 81 ~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
+++.|.+.+|+++|+++.+..++.+..+|+++++++|++.++..++.+|++|||..|+|+|.|+++...++...|+++++
T Consensus 118 qdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgveivp 197 (471)
T KOG0256|consen 118 QDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVEIVP 197 (471)
T ss_pred ccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+.+..+++|.++.++||++++++++.+.+++.|+++||+||.|.+++++++..+++++.++++++|+||+|+..+|+..
T Consensus 198 v~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~- 276 (471)
T KOG0256|consen 198 VHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKS- 276 (471)
T ss_pred EEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
.|.+++++..+. ..+.++|++++|+||.||+||+|+|.|...++.+..+..++..|+.+|++.|..++.+|.|.
T Consensus 277 -~F~Sv~ev~~~~-----~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~ 350 (471)
T KOG0256|consen 277 -EFRSVLEVRKDP-----HLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDE 350 (471)
T ss_pred -CceEHHHHhhcc-----ccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchH
Confidence 899999987753 12568999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
.|.+.++++++++++.+.+++.+.|+++||++.++++|+|+|+++...+...+++.+.+++.+++.+-++.+.||+.|.+
T Consensus 351 ~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C 430 (471)
T KOG0256|consen 351 EFTREYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHC 430 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCccee
Confidence 99999999999999999999999999999999999999999999999999889999999999999888999999999999
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
..+||||+||+...++.++.+++||+.++.
T Consensus 431 ~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 431 HEPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred cCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 999999999998778888889999999998
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=558.01 Aligned_cols=455 Identities=52% Similarity=0.921 Sum_probs=386.4
Q ss_pred CcccccccccCCCCCccchhhhhhhcCCCCCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccC
Q 037587 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALF 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 80 (464)
+||+.|.++.|.+++.||..|..++.++|++..||.|+|+|+++||+++.+.+.+++++.+...++..+++..+.++..|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 90 (496)
T PLN02376 11 ILSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANF 90 (496)
T ss_pred hhhhhhcccccCCCCchHHHHHHHhCCCCCcccCCCceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhcc
Confidence 58999999999999999999999999999999999999999999999999999999999876655554455556677789
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 81 ~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
+++.|.++||++||+++++.+|..+++++++|++|+|+++++..++.++++|||.|++++|+|+.|...+....|+++++
T Consensus 91 ~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~ 170 (496)
T PLN02376 91 QDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIP 170 (496)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEE
Confidence 99999999999999999998886677899999999999999999999999999999999999999998777433999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++++.+++|.++++.++++++...+.+.++|+|+++|||||||.++|.+++++|+++|++++++||+||+|+++.|.+.
T Consensus 171 v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~- 249 (496)
T PLN02376 171 VPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG- 249 (496)
T ss_pred EeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC-
Confidence 9998767899999999988765544456899999999999999999999999999999999999999999999888765
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
.+.++.++..+++. .+.+.+++++++||||.||+||+|+||++++++.+....+++..++.+++++|.++..++.+.
T Consensus 250 -~~~si~~l~~~~~~--~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~ 326 (496)
T PLN02376 250 -DFVSVAEVVNDVDI--SEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDD 326 (496)
T ss_pred -CcccHHHhhccccc--cccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCh
Confidence 56777776543200 000124678899999999999999999999878787777777777778999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc-CChhHHHHHHHHHHHhcCeEEeCCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS-NTFEAEKELWKKIIFEVGLNISPGSSCH 399 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~-~~~~~~~~l~~~ll~~~gI~v~pg~~f~ 399 (464)
++++++++++++.++++++.+.+.|++.|+++.++++|+|+|++++..... .....+.+++..++++.||.|.||+.|+
T Consensus 327 ~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~ 406 (496)
T PLN02376 327 QFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFR 406 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccC
Confidence 887889999999999999999999999999999999999999999865433 3334556788999888899999999998
Q ss_pred CCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhCcccc------------ccccceeeeeeeeeeeccccCC
Q 037587 400 CNEPGWFRICFANITEETLQVALQRIKVFAQSCNPQML------------LLQRRSIIGKWISKLSSSSSYD 459 (464)
Q Consensus 400 ~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 459 (464)
...++||||+|+..+++++++++++|++++.+.+.... ..+...+.++|.++|||+..|+
T Consensus 407 ~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (496)
T PLN02376 407 CTEPGWFRICFANMDDDTLHVALGRIQDFVSKNKNKIVEKASENDQVIQNKNAKKLKWRQSNLRLSFRRLYE 478 (496)
T ss_pred CCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhcchhhhhccceeeccchhhh
Confidence 77789999999976889999999999999987664311 1112222334458998854454
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=531.80 Aligned_cols=429 Identities=60% Similarity=1.041 Sum_probs=374.6
Q ss_pred CcccccccccCCCCCccchhhhhhhcCCCCCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccC
Q 037587 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALF 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 80 (464)
+||+++.++.|.+++.|+..|+.+..++|++..||.|+|+|+++||.+..+.+.+++++.++...+...+.....++..|
T Consensus 12 ~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y 91 (447)
T PLN02607 12 GLSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALF 91 (447)
T ss_pred hhhhhhhhcccCCCchHHHHHHHhcCCCCCcccCCCceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhcc
Confidence 58999999999999999999999999999999999999999999999999999999999866543332222234456779
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 81 ~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
.++.|.++||+++|++++++++...++++++|++|+|+++++..++.++++|||.|++++|+|+.|...+....|+++++
T Consensus 92 ~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~ 171 (447)
T PLN02607 92 QDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVP 171 (447)
T ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEE
Confidence 99999999999999999998876667899999999999999999999999999999999999999988776434999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++++.+++|.++++.++++++++.+.+.++|+|+++|||||||.++|.+++++++++|+++++++|+||+|+++.|+..
T Consensus 172 v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~- 250 (447)
T PLN02607 172 IHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSAS- 250 (447)
T ss_pred EeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-
Confidence 9998777899999999999988777778999999999999999999999999999999999999999999999888765
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
++.++.++....+ ..+..++|++++||||.||++|+|+||+++.++.+...++....+..+++++|.++..+|.+.
T Consensus 251 -~f~S~~s~~~~~~---~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~ 326 (447)
T PLN02607 251 -EFVSVAEIVEARG---YKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDE 326 (447)
T ss_pred -CcccHHHHHhhcC---CCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCc
Confidence 5677776643210 001247899999999999999999999999777777777777767668999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
++.++++++++++++++++.+.+.|++.|+++.++++|+|+|++++........+.+.+++.++++++||.|.||..|+.
T Consensus 327 ~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~ 406 (447)
T PLN02607 327 EFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHC 406 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCC
Confidence 88778999999999999999999999999999999999999999986543333344557888888888999999999988
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhCc
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
..++||||+|+..+++.+++++++|.+++++++.
T Consensus 407 ~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~ 440 (447)
T PLN02607 407 SEPGWFRVCFANMSEDTLEVALKRIHRFMDRRKT 440 (447)
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999976899999999999999987764
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-65 Score=516.97 Aligned_cols=457 Identities=74% Similarity=1.219 Sum_probs=379.1
Q ss_pred CcccccccccCCCCCccchhhhhhhcCCCCCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccC
Q 037587 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALF 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 80 (464)
++|....+..+..+..|+..|..+..++|++..+|.|+|+|+++||+++.+.+.++++..++...+...+......+..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y 82 (468)
T PLN02450 3 LLSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALF 82 (468)
T ss_pred ccchhhcccccCCCCchHHHHHHHhcCCCCcccCCCeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcC
Confidence 47888999999999999999999999999999999999999999999999999998887543211111111112345679
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 81 ~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
+++.|.++||++||+++++.++.++++++++|++|+|+++++..++.++++|||.|++++|+|+.|...+....|+++++
T Consensus 83 ~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~ 162 (468)
T PLN02450 83 QDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVP 162 (468)
T ss_pred CCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEE
Confidence 99999999999999999988876667899999999999999999999999999999999999999988777434999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++++++++|.++++.+++++.+..+.+.++++|+++|||||||.++|.+++++|+++|++++++||+||+|+++.|.+.
T Consensus 163 v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~- 241 (468)
T PLN02450 163 IHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP- 241 (468)
T ss_pred EecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC-
Confidence 9998677899999999999877555566899999999999999999999999999999999999999999999878654
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
.+.++..+..+... ...+..++|++++||||.||++|+|+||++++++.+.+.+.+...++.++.++|.++..+|++.
T Consensus 242 -~~~s~l~~~~~~~~-~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~ 319 (468)
T PLN02450 242 -GFVSVMEVLKDRKL-ENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDK 319 (468)
T ss_pred -CcccHHHHhhhccc-ccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCc
Confidence 45565544321000 0001347999999999999999999999999877766666666666668899999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
.+...+++++++.++++++.+.+.|+++|+++.++++|+|+|++++.......+..+.+++..+++++||.|.||+.|+.
T Consensus 320 ~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~ 399 (468)
T PLN02450 320 KFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHC 399 (468)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCC
Confidence 87556889999999999999999999999999999999999999986554444455567888998889999999999987
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC----c----cccccccceeeeeeeeeeeccccCCCCCC
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVFAQSCN----P----QMLLLQRRSIIGKWISKLSSSSSYDQEPD 463 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (464)
..++||||+++..+++++++++++|++++++.. + |...+-.+.--.||--+++| .|.||.
T Consensus 400 ~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 467 (468)
T PLN02450 400 TEPGWFRVCFANMSEETLDLAMKRLKSFVESDSGRRINKSSHQRLKNLRRKTVSKWVFRLSF---HDREPE 467 (468)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHhccccccccchhcccccccchhhhccceEEee---ccCCcC
Confidence 678999999997688999999999999997665 1 33334444445689988876 466664
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-58 Score=454.79 Aligned_cols=357 Identities=27% Similarity=0.500 Sum_probs=307.9
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc-EE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK-LV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~-i~ 113 (464)
.++|+|+++++.++ ++.+.+++...... ... .|.+..|.++||++||+++.+.++ +.+++++ |+
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~-----------~~~-~Y~~~~G~~~LReaia~~~~~~~~--~~~~~~~eii 93 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEE-----------GGT-HYTPSAGIPELREAIAEKYKRRYG--LDVDPEEEII 93 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhc-----------ccC-CCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 68999999999886 45566665553211 111 777899999999999999999887 5577776 99
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCC-CCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS-NGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++..++.++++|||.|++++|.|+.|...+... |.+++.++++.+ ++|.+|++.+++++.+ ++|+
T Consensus 94 vt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~-gg~~v~v~l~~~~~~f~~d~~~l~~~i~~------ktk~ 166 (393)
T COG0436 94 VTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLA-GGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKA 166 (393)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc-CCEEEEEeCCcCccCCcCCHHHHHhhcCc------cceE
Confidence 9999999999999999999999999999999999999877 999999998655 4899999999999876 8999
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++||||||.+++.+++++|+++|++|+++||.||+|.++.|++. .+.++.++.+ ..++++++.|||
T Consensus 167 i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~--~~~s~~~~~~---------~~~~~i~i~s~S 235 (393)
T COG0436 167 IILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGA--EHPSILELAG---------ARDRTITINSFS 235 (393)
T ss_pred EEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCC--CcCCHhhcCC---------CcceEEEEeccc
Confidence 99999999999999999999999999999999999999999999875 4567666633 247999999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-G 349 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 349 (464)
|.|+|+|||+||++++++.+.+.+.++... .+++.+.|.++..+|+.++. ....+.+++.+++||+.+.+.|.+. |
T Consensus 236 K~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g 314 (393)
T COG0436 236 KTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGG 314 (393)
T ss_pred ccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999756676666544433 35788999999999998754 4567888899999999999999988 5
Q ss_pred Ceeec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 350 IRCLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 350 ~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
+.+.. |+|+||+|++++.. .+..+++.+|+++.||.|.||+.|+.. +.+++|||++. +++++++++++|.+
T Consensus 315 ~~~~~~p~Ga~Y~~~~i~~~------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~ 387 (393)
T COG0436 315 LSVVKPPEGAFYLFPKIPEL------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLAR 387 (393)
T ss_pred eeeccCCCeeEEEEeecCCC------CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHH
Confidence 88887 88999999999875 224479999999999999999999985 78999999996 66999999999999
Q ss_pred HHHhh
Q 037587 428 FAQSC 432 (464)
Q Consensus 428 ~l~~~ 432 (464)
+++..
T Consensus 388 ~~~~~ 392 (393)
T COG0436 388 FLAEY 392 (393)
T ss_pred HHHhc
Confidence 98765
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=426.16 Aligned_cols=355 Identities=19% Similarity=0.324 Sum_probs=285.7
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i 112 (464)
+.++|+|+.|+++++ ++.+.+++.+.... .....|++..|.++||++||+++.+.+| ++++++ +|
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 95 (388)
T PRK07366 29 GKELIDLSLGSSDLPAPAHALEAIAQSLHD-----------PSTHGYLLFHGTLDFREAAAQWYEQRFG--LAVDPETEV 95 (388)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC-----------cccCCCCCCCCCHHHHHHHHHHHHHhhC--CcCCCcCeE
Confidence 456899999999886 56666666553110 2345799889999999999999987766 457888 69
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++.+||.|++++|+|+.|...++.. |++++.++++++++|.+|++.+++.+.. ++++
T Consensus 96 ~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 168 (388)
T PRK07366 96 LPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLA-GGQIYPMPLRAENDFLPVFADIPTEVLA------QARL 168 (388)
T ss_pred EECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEECCCccCCCCCHHHHHHhhcc------cceE
Confidence 99999999999999999999999999999999999988877 9999999998777888999998877643 6899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
++++|||||||.++|.+++++|+++|++++++||+||+|.++.|++.. ...++.++.. ..+++++++|||
T Consensus 169 i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~---------~~~~vi~~~SfS 238 (388)
T PRK07366 169 MVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV-EPPSILQADP---------EKSVSIEFFTLS 238 (388)
T ss_pred EEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC-CCCChhhCCC---------CcccEEEEeecc
Confidence 999999999999999999999999999999999999999998776530 1344444422 235789999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccCCC---ChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGLV---SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG 349 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 349 (464)
|+||+||+|+||+++++ .+.+.+.+....+.. +.+.|.++..+..+ ++++++.++.++++++.+.+.|+++|
T Consensus 239 K~~g~~GlRiG~~v~~~-~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~l~~~~~~~~~~r~~l~~~L~~~~ 313 (388)
T PRK07366 239 KSYNMGGFRIGFAIGNA-QLIQALRQVKAVVDFNQYRGILNGAIAALTGP----QATVQQTVQIFRQRRDAFINALHQIG 313 (388)
T ss_pred cccCCcchhheehcCCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999854 455555555443322 22344444444333 45688899999999999999999989
Q ss_pred CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 350 IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 350 ~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+.+..+++|+|+|++++..... ...+++..+++++||.|+||+.|+...++|+||+++. +++++++++++|++++
T Consensus 314 ~~~~~p~~g~f~~~~~~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 314 WPVPLPEATMYVWAKLPEPWQG----NSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIAAFL 388 (388)
T ss_pred CcccCCCeeEEEEEECCcccCC----CHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHHHhC
Confidence 8877789999999999864321 1235777887888999999999976556899999985 7999999999998763
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=418.88 Aligned_cols=350 Identities=21% Similarity=0.343 Sum_probs=290.0
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i 112 (464)
..++|+|+.+.++++ ++.+.+++.+.... .....|+ ..|.++||++||+++++.+| +++++ ++|
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~~y~-~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 96 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQ-----------KESYGYT-LSGIQEFHEAVTEYYNNTHN--VILNADKEV 96 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhc-----------cccCCCC-CCCcHHHHHHHHHHHHHHhC--CCCCCCCeE
Confidence 457899999998774 46666666553110 1223454 47899999999999998776 55788 899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||.|++++|+|+.|...+... |+++++++++++++|.+|++.+++.+.. ++++
T Consensus 97 ~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 169 (399)
T PRK07681 97 LLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMA-GATSYYMPLKKENDFLPDLELIPEEIAD------KAKM 169 (399)
T ss_pred EECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhc-CCEEEEEecCCCCCCcCCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999999988876 9999999998777899999999888754 7899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|+++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. ...++.++.. ..+++++++|||
T Consensus 170 v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~S~S 238 (399)
T PRK07681 170 MILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGN--KPISFLSVPG---------AKEVGVEINSLS 238 (399)
T ss_pred EEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCC--CCCChhhCCC---------CcccEEEEeecc
Confidence 99999999999999999999999999999999999999999877654 3345444422 236899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|+||++|+|+||+++++ .+.+.+..... .++++.+.|.++..++.+.. +++++.++.++++++.+.+.|++.|+
T Consensus 239 K~~~~~GlRiG~~i~~~-~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g~ 314 (399)
T PRK07681 239 KSYSLAGSRIGYMIGNE-EIVRALTQFKSNTDYGVFLPIQKAACAALRNGA---AFCEKNRGIYQERRDTLVDGFRTFGW 314 (399)
T ss_pred cccCCccceeEEEecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999854 45555554432 34688899999999998753 46788888999999999999999999
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
++..+.+|+|+|++++.... ..+++..+++++||.|+||..|+...++++||+++. +++++++++++|++
T Consensus 315 ~~~~p~~g~f~~~~l~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~ 384 (399)
T PRK07681 315 NVDKPAGSMFVWAEIPKGWT------SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384 (399)
T ss_pred cccCCCeeeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 88778899999999985322 235788888778999999999976567899999984 78999999999988
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=414.07 Aligned_cols=366 Identities=23% Similarity=0.339 Sum_probs=291.8
Q ss_pred CCCceEEeeccccccc-HH-HHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-
Q 037587 34 NPSGIIQMGLAENQLS-FD-LLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN- 110 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~- 110 (464)
++.++++|+.+.+..+ ++ .+.+..+... ......|++..|.++||+++|+++++.++ +.++++
T Consensus 31 ~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~--~~~~~~~ 96 (403)
T PRK08636 31 AGEDIIDFSMGNPDGPTPQHIIDKLCESAQ------------KPKTHGYSVSKGIYKLRLAICNWYKRKYN--VDLDPET 96 (403)
T ss_pred cCCCEEEcCCcCCCCCCCHHHHHHHHHHhc------------CCccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCC
Confidence 4567899998865543 22 3333322210 02356899999999999999999987766 457787
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc-CCc
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL-NLK 189 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~-~~~ 189 (464)
+|++|+|+++++..++.+++++||.|++++|+|+.+...+... |+++++++++.+++|.+|++.+...+++..+. .++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 175 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILA-GGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPK 175 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEeccccccCccChhhhhhHHHHHHhhccCC
Confidence 7999999999999999999999999999999999999888877 99999999865567889988775555443322 347
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++++++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. .+.++..+.. ..+++++++
T Consensus 176 ~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~~~~~~~~---------~~~~~i~~~ 244 (403)
T PRK08636 176 PKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGY--KTPSILEVEG---------AKDVAVESY 244 (403)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCC--CCCChhcCCC---------ccccEEEEE
Confidence 89999999999999999999999999999999999999999999877653 3345444411 235788899
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV 347 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 347 (464)
||||.||+||+|+||++++++ +...+.+.... ..++++.|.++..+++.. .+++++.++.++++++.+.+.|++
T Consensus 245 S~SK~~~~~GlRiG~iv~~~~-li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 320 (403)
T PRK08636 245 TLSKSYNMAGWRVGFVVGNKK-LVGALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYRKRRDVLIESFAN 320 (403)
T ss_pred ecccccCCccceeeeeeCCHH-HHHHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998554 55555444332 346678888887777532 457888899999999999999999
Q ss_pred CCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 348 AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 348 ~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
.|+.+.++++|+|+|++++...... ...+++..+++++||.|.||..|+....+|+||+++ .+++++++++++|++
T Consensus 321 ~~~~~~~p~~g~~~~~~l~~~~~~~---~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~~~~rl~~ 396 (403)
T PRK08636 321 AGWELQKPRASMFVWAKIPEPARHL---GSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI-ENENRIRQAARNIKK 396 (403)
T ss_pred CCCcccCCCcceEEEEECCCccCCC---CHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec-CCHHHHHHHHHHHHH
Confidence 8888888999999999998643211 134577788878899999999998666789999998 589999999999999
Q ss_pred HHHhhC
Q 037587 428 FAQSCN 433 (464)
Q Consensus 428 ~l~~~~ 433 (464)
+++.++
T Consensus 397 ~l~~~~ 402 (403)
T PRK08636 397 FLKELE 402 (403)
T ss_pred HHHhhc
Confidence 998754
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-52 Score=414.78 Aligned_cols=360 Identities=18% Similarity=0.320 Sum_probs=289.4
Q ss_pred CCCCceEEeeccccc-c-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-
Q 037587 33 HNPSGIIQMGLAENQ-L-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP- 109 (464)
Q Consensus 33 ~~~~~~i~l~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~- 109 (464)
.-+.++|+|+.+... . +++.+.+.+.+... ......|++..|.++||++|++++.+.+| +++++
T Consensus 36 ~~~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~LR~aia~~l~~~~g--~~~~~~ 102 (405)
T PRK06207 36 PLPGRPVDFSHGDVDAHEPTPGAFELFSAGVE-----------RGGVQAYTEYRGDADIRELLAARLAAFTG--APVDAA 102 (405)
T ss_pred cCCCCceecCCcCCCCCCCCHHHHHHHHHHHh-----------cCCCccCCCCCCCHHHHHHHHHHHHHHhC--CCCCCC
Confidence 446778999986543 3 34555555444211 02245799999999999999999998876 45677
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC---CCCCcccCHHHHHHHHHHHhhc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS---SSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~---~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
++|++|+|+++++..++.+++++||.|++++|+|+.+...+... |++++.++++ .+++|.+|++.|++.+.+
T Consensus 103 ~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~---- 177 (405)
T PRK06207 103 DELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF-EGEMVPVQLDYLSADKRAGLDLDQLEEAFKA---- 177 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEeccccCcccCCCcCHHHHHHhhhh----
Confidence 89999999999999999999999999999999999999888876 9999999986 334688999999998865
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
++++|+++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. .+.++..+.. ..++++
T Consensus 178 --~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~---------~~~~vi 244 (405)
T PRK06207 178 --GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGT--SYTHLRALPI---------DPENVI 244 (405)
T ss_pred --cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCchhcCCC---------CcCcEE
Confidence 688999999999999999999999999999999999999999999887654 3334333311 347999
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (464)
+++||||+||+||+|+||+++++ .+.+.+...... ...+.+.|.++..++++.. .++++.++.++++++.+.+.
T Consensus 245 ~i~SfSK~~~lpGlRiG~ii~~~-~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~r~~l~~~ 320 (405)
T PRK06207 245 TIMGPSKTESLSGYRLGVAFGSP-AIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD---GWMKDRIARHQAIRDDLLRV 320 (405)
T ss_pred EEecchhhccCcccceEEEEcCH-HHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999854 455555544433 2356789999999997641 23555566677788999999
Q ss_pred HHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHH
Q 037587 345 LKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 345 l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 423 (464)
|+++ ++.+.++++|+|+|++++... .+..+++..+++++||.|.||..|+...+++|||+++. ++++++++++
T Consensus 321 L~~~~~~~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~ 394 (405)
T PRK06207 321 LRGVEGVFVRAPQAGSYLFPRLPRLA-----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAE 394 (405)
T ss_pred HhcCCCceecCCCeeEEEEEeCcccC-----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHH
Confidence 9887 788888999999999998521 11235777877778999999999976667899999996 8899999999
Q ss_pred HHHHHHHhhC
Q 037587 424 RIKVFAQSCN 433 (464)
Q Consensus 424 ~l~~~l~~~~ 433 (464)
+|++++++.+
T Consensus 395 rl~~~l~~~~ 404 (405)
T PRK06207 395 RIAQLIERYR 404 (405)
T ss_pred HHHHHHHHhh
Confidence 9999998754
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=413.41 Aligned_cols=353 Identities=21% Similarity=0.351 Sum_probs=285.8
Q ss_pred CCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-c
Q 037587 34 NPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-K 111 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~ 111 (464)
.+.++|+|+.+.+.++ ++.+.+++...... .....|++..|.++||+++|+++++.+| ++++++ +
T Consensus 30 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~aia~~~~~~~g--~~~~~~~~ 96 (389)
T PRK08068 30 EGHDVINLGQGNPDQPTPEHIVEALQEAAEN-----------PANHKYSPFRGYPFLKEAAADFYKREYG--VTLDPETE 96 (389)
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCcc
Confidence 3456899999966654 35556655543110 2346798888999999999999987766 457888 8
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
|++|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++.++++++++|.+|++++++.+.+ +++
T Consensus 97 i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~------~~~ 169 (389)
T PRK08068 97 VAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALA-RAQFETMPLIAENNFLPDYTKIPEEVAE------KAK 169 (389)
T ss_pred EEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEeecccccCCCCCHHHHHHhccc------cce
Confidence 999999999999999999999999999999999999888876 9999999998666889999999988754 789
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+|+++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. ...+...... ..+++++++||
T Consensus 170 ~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~--~~~s~~~~~~---------~~~~~i~~~S~ 238 (389)
T PRK08068 170 LMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ--KPVSFLQTPG---------AKDVGIELYTL 238 (389)
T ss_pred EEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC--CCcChhhCCC---------ccCCEEEEecc
Confidence 999999999999999999999999999999999999999998777643 2234333321 33688999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhcccC--CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSSFG--LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG 349 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 349 (464)
||+||++|+|+||++++ +.+.+.+.+....+ +.+++.|.++..++.+. .++++..++.++++++.+.+.|+++|
T Consensus 239 SK~~g~~GlRiG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~g 314 (389)
T PRK08068 239 SKTFNMAGWRVAFAVGN-ESVIEAINLLQDHLFVSLFGAIQDAAIEALLSD---QSCVAELVARYESRRNAFISACREIG 314 (389)
T ss_pred hhccCCccceeEeEecC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999985 45555555544333 33456788877777543 25678889999999999999999999
Q ss_pred CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 350 IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 350 ~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
+.+.++++|+|+|++++.... ..+++..+++++||.|+||..|+..+++++||+++. +++.+.+++++|+++
T Consensus 315 ~~~~~~~g~~~~~v~~~~~~~------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~ 386 (389)
T PRK08068 315 WEVDAPKGSFFAWMPVPKGYT------SEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGKL 386 (389)
T ss_pred CcccCCCeeEEEEEECCCCCC------HHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHHh
Confidence 998899999999999985322 235778887778999999999986567899999985 778899999888763
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=416.63 Aligned_cols=365 Identities=19% Similarity=0.286 Sum_probs=290.3
Q ss_pred CCceEEeecccc---cc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 35 PSGIIQMGLAEN---QL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 35 ~~~~i~l~~~~n---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
..++++|+.+++ .+ +++.+.+++.+.... .....|++..|.++||+++|+++++.+| +.++++
T Consensus 31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~ 97 (433)
T PRK06855 31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMD-----------DKSYGYCPTKGVLETREFLAELNNKRGG--AQITPD 97 (433)
T ss_pred cccccccccCCCcccCCCCCHHHHHHHHHHhhc-----------CCCCCCCCCCCCHHHHHHHHHHHHhccC--CCCCHh
Confidence 346789988876 23 355666665553210 2346799999999999999999988765 567899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|++|+|+++++..++. ++.+||.|++++|+|+.|........|++++.++++++++|.+|+++|++.+.+ ++++
T Consensus 98 ~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~----~~~~ 172 (433)
T PRK06855 98 DIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKY----NPSI 172 (433)
T ss_pred HEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhc----CCCc
Confidence 99999999999999985 789999999999999987654332238899999988777899999999998853 2367
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
++++++|||||||.++|.+++++|+++|+++|++||+||+|.++.|.+. .+.++.++.+ ..++++++|
T Consensus 173 ~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~sl~~~~~----------~~~~I~~~S 240 (433)
T PRK06855 173 AGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK--KTVPLSEVIG----------DVPGIALKG 240 (433)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCCHHHHcC----------cCCeEEEec
Confidence 8899999999999999999999999999999999999999999888654 4456665533 136799999
Q ss_pred CCcCCCCCccEEEEEEecC----HHHHHHHHHh---c-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Q 037587 271 LSKDFSMPGFRVGMIYSNN----ERVVSAATKM---S-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLV 342 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~----~~~~~~~~~~---~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (464)
|||.|++||+|+||+++++ +.+...+..+ . ....++++.|.++..++.++.+ +++++++++.++++++.+.
T Consensus 241 ~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~ 319 (433)
T PRK06855 241 ISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAY 319 (433)
T ss_pred CccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999742 2222222221 1 2234678999999999998776 7889999999999999999
Q ss_pred HHHHhC-CCeeecCCccEEEEEecCccccc-------C--C------------hhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 343 SGLKVA-GIRCLKSNAGLFCWVDMRHLLVS-------N--T------------FEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 343 ~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~-------~--~------------~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
+.|++. |+.+.+|+||||+|++++..... . . .....+++..+++++||.+.||+.|+.
T Consensus 320 ~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~ 399 (433)
T PRK06855 320 EKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCT 399 (433)
T ss_pred HHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCC
Confidence 999887 78888999999999999864200 0 0 001346777888899999999999975
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
. ..++||+++..+++++++++++|++++++
T Consensus 400 ~-~~~~Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 400 E-LNGFRVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred C-CCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 3 34599999977899999999999999874
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=411.39 Aligned_cols=361 Identities=24% Similarity=0.352 Sum_probs=289.2
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i 112 (464)
..++|+|+.++++++ ++.+.+.+..... ......|++..|.++||+++|+++++.+| +.++++ +|
T Consensus 29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 95 (405)
T PRK09148 29 GADIIDLGMGNPDLPTPQHIVDKLCETAQ-----------DPRTHRYSASKGIPGLRRAQAAYYARRFG--VKLNPDTQV 95 (405)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHc-----------CcccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcE
Confidence 456899999988764 3444444443211 02346899999999999999999987766 446787 89
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||.|++++|+|+.+...+... |++++.++++.+++|..+ +++.++. ..+++++
T Consensus 96 ~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~~---l~~~~~~---~~~~~~~ 168 (405)
T PRK09148 96 VATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMA-GGVIRSVPAEPDEEFFPA---LERAVRH---SIPKPIA 168 (405)
T ss_pred EEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhc-CCEEEEEeCCCCCCCccC---HHHHHhh---ccccceE
Confidence 99999999999999999999999999999999998888776 999999998765555434 4444332 1237889
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|+++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. .+.++..+.. ..+++++++|||
T Consensus 169 v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~--~~~s~~~~~~---------~~~~~i~~~SfS 237 (405)
T PRK09148 169 LIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGN--PPPSVLQVPG---------AKDVTVEFTSMS 237 (405)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCC--CCCChhhCCC---------ccCcEEEEeccc
Confidence 99999999999999999999999999999999999999999877654 3344444311 236788999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.||+||+|+||++++ +.+.+.+.+... .+++++++|.++..++++. ++++++.++.++++++.+.+.|+++|+
T Consensus 238 K~~~~pGlR~G~~v~~-~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~ 313 (405)
T PRK09148 238 KTFSMAGWRMGFAVGN-ERLIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKKRRDVLVESFGRAGW 313 (405)
T ss_pred cccCCcchheeeeeCC-HHHHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999985 455555655543 2456789999999999764 456888899999999999999999998
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.+.++++|+|+|++++...... .+.+++..+++++||.|+||..|+...++|+||+++ .+++.+.+++++|.++++
T Consensus 314 ~~~~p~~g~f~~~~l~~~~~~~---~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~-~~~~~l~~al~~l~~~l~ 389 (405)
T PRK09148 314 DIPPPAASMFAWAPIPEAFRHL---GSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV-ENEQRIRQAARNIKRFLS 389 (405)
T ss_pred ccCCCCeeEEEEEECCCccCCC---CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 8878899999999998643211 134677888878899999999997655789999998 589999999999999998
Q ss_pred hhCc
Q 037587 431 SCNP 434 (464)
Q Consensus 431 ~~~~ 434 (464)
++.+
T Consensus 390 ~~~~ 393 (405)
T PRK09148 390 SADE 393 (405)
T ss_pred HHHH
Confidence 7765
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=418.99 Aligned_cols=346 Identities=23% Similarity=0.381 Sum_probs=277.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCChhhhcccCCC
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-DPGDAFLLPTPYYPGFDRDLKWRPG 155 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~~g 155 (464)
...|++..|.++||++||+++++.+| +++++++|++|+|+++++..++++++ ++||.|++++|+|+.|...++.. |
T Consensus 108 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~-g 184 (481)
T PTZ00377 108 TGAYTDSAGYPFVRKAVAAFIERRDG--VPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLL-G 184 (481)
T ss_pred ccCcCcccCCHHHHHHHHHHHHHhcC--CCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHc-C
Confidence 46799999999999999999998766 56789999999999999999999998 79999999999999999998877 9
Q ss_pred cEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 156 VEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 156 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
.+++.++++++++|.+|++.|++.+.+....+.++++++++|||||||.++|.+++++|+++|++++++||+||+|.++.
T Consensus 185 ~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~ 264 (481)
T PTZ00377 185 GKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI 264 (481)
T ss_pred CEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence 99999999877889999999999987644444578999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCC---CCcEEEEcCCCcC-CCCCccEEEEEEe--cCHHHHHHHHHhc-ccCCCChH
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDL---WSRIHIVYSLSKD-FSMPGFRVGMIYS--NNERVVSAATKMS-SFGLVSSQ 308 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~vi~l~S~SK~-~g~~GlRiG~l~~--~~~~~~~~~~~~~-~~~~~s~~ 308 (464)
|.+. ..+.++..+..++. .. ..++++++||||. ++++|+|+||+++ .++.+.+.+.+.. ..+.++++
T Consensus 265 ~~~~-~~~~s~~~~~~~l~-----~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~ 338 (481)
T PTZ00377 265 YDGE-KPFISFRKVLLELP-----AEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVV 338 (481)
T ss_pred cCCC-CCcccHHHHHHhhc-----ccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChH
Confidence 8432 13455554433221 01 1379999999997 6999999999986 2455555554443 33457889
Q ss_pred HHHHHHHHcCCch-----h--hHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecC--ccccc----CCh
Q 037587 309 TQYLLSRMLSDKK-----F--TCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMR--HLLVS----NTF 374 (464)
Q Consensus 309 ~q~~~~~~l~~~~-----~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~--~~~~~----~~~ 374 (464)
+|.++..++++.. + ..+++++.+..++++++.+.+.|.++ |+.+.+|+||||+|++++ ..... ...
T Consensus 339 ~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~ 418 (481)
T PTZ00377 339 GQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGL 418 (481)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCC
Confidence 9999999996421 1 12334444556899999999999988 899999999999998764 21110 001
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
..+.+++..+++++||.|.||+.|+.. +.++||||++ .+++++++++++|++++++.
T Consensus 419 ~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~-~~~e~l~~~l~rl~~~~~~~ 476 (481)
T PTZ00377 419 APDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL-PPEEQIEEMVKKIKEFHESF 476 (481)
T ss_pred CcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHH
Confidence 113346778888999999999999853 3569999999 68899999999999998764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=411.22 Aligned_cols=354 Identities=21% Similarity=0.350 Sum_probs=286.5
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC-CCCC-c
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK-FDPN-K 111 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~~-~ 111 (464)
..++|+|+.++++++ ++.+.+++.+. +.....|++..|.++||++||+++++.+| ++ ++++ +
T Consensus 28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~-------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~~ 92 (396)
T PRK09147 28 DLPPISLSIGEPKHPTPAFIKDALAAN-------------LDGLASYPTTAGLPALREAIAAWLERRYG--LPALDPATQ 92 (396)
T ss_pred CCCeEecCCCCCCCCCCHHHHHHHHHH-------------hhhhcCCCCCCCCHHHHHHHHHHHHHHhC--CCcCCccce
Confidence 457899999999875 46666666553 13456799999999999999999988776 45 6775 8
Q ss_pred EEEeCChHHHHHHHHHHhcCC---CCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCC
Q 037587 112 LVLTAGSTAANETLMFCLADP---GDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNL 188 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~---gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 188 (464)
|++|+|+++++..++++++++ ||.|++++|+|+.|...+... |++++.+|++++++|.+|++.+++.+.+
T Consensus 93 i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~vp~~~~~~~~~d~~~l~~~~~~------ 165 (396)
T PRK09147 93 VLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLA-GAEPYFLNCDPANNFAPDFDAVPAEVWA------ 165 (396)
T ss_pred EEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhc-CCEEEEeccCccccCccCHHHHHHHHhh------
Confidence 999999999999999999999 899999999999998888776 9999999998777899999999887754
Q ss_pred ceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEE
Q 037587 189 KVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIV 268 (464)
Q Consensus 189 ~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l 268 (464)
++++++++|||||||.++|.+++++|+++|++++++||+||+|.++.|++.. ...+........+ .+..++++++
T Consensus 166 ~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~vi~~ 240 (396)
T PRK09147 166 RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAA-PPLGLLEAAAELG----RDDFKRLVVF 240 (396)
T ss_pred ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCC-CCchhhhhccccC----ccccccEEEE
Confidence 7899999999999999999999999999999999999999999998776420 1112211111110 0124799999
Q ss_pred cCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 269 YSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 269 ~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
+||||.||++|+|+||+++++ .+.+.+.+... .+.++++.|.++.+.+.+. +++++.++.++++++.+.+.|.
T Consensus 241 ~S~SK~~~~~GlRiG~~~~~~-~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~ 315 (396)
T PRK09147 241 HSLSKRSNVPGLRSGFVAGDA-ALLKKFLLYRTYHGCAMPPAVQAASIAAWNDE----AHVRENRALYREKFDAVTPILA 315 (396)
T ss_pred eccccccCCccceeeeecCCH-HHHHHHHHHhhhcccCCCHHHHHHHHHHhcch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999965 45454544433 2457888999888877653 4578889999999999999998
Q ss_pred hCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEeecCCHHHHHH
Q 037587 347 VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC------NEPGWFRICFANITEETLQV 420 (464)
Q Consensus 347 ~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Ris~~~~~~e~l~~ 420 (464)
+. +.+..|++|+|+|++++. ...+++..+++++||.|.||..|+. ...+++||+++. +++++++
T Consensus 316 ~~-~~~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~ 385 (396)
T PRK09147 316 PV-LDVQLPDAGFYLWAKVPG--------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVE 385 (396)
T ss_pred Hh-cCCCCCCeeEEEEEECCC--------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHH
Confidence 75 666678899999999971 1235778888788999999998863 235799999996 7899999
Q ss_pred HHHHHHHHHH
Q 037587 421 ALQRIKVFAQ 430 (464)
Q Consensus 421 ~l~~l~~~l~ 430 (464)
++++|+++++
T Consensus 386 ~l~rl~~~~~ 395 (396)
T PRK09147 386 AAERIVDFCR 395 (396)
T ss_pred HHHHHHHHhc
Confidence 9999999874
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=415.41 Aligned_cols=364 Identities=21% Similarity=0.348 Sum_probs=290.2
Q ss_pred CCceEEeecccccc-----cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 35 PSGIIQMGLAENQL-----SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 35 ~~~~i~l~~~~n~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
..++|+|+.+.+.+ +++.+.+.+.+.... .....|++..|.++||++||+++++.++ ..+++
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lR~aiA~~~~~~~~--~~~~~ 131 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS-----------GKGNSYGPGAGILPARRAVADYMNRDLP--HKLTP 131 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCChHHHHHHHHHHHHHhcC--CCCCc
Confidence 56799999997652 223445544442110 2345798888999999999999998765 45789
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
++|++|+|++++|..++.++++|||.|++++|+|+.|...+... |++++.+++.++++|.+|++.|++.+.+ +
T Consensus 132 ~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~l~~~~~~~~d~~~l~~~~~~------~ 204 (462)
T PLN02187 132 EDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYS-GLEVRKFDLLPEKEWEIDLEGIEAIADE------N 204 (462)
T ss_pred ccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHc-CCEEEEEeCccccCCccCHHHHHHhcCC------C
Confidence 99999999999999999999999999999999999998887776 9999999987667899999999987754 7
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|.+. .+.++..+.. ..++++++
T Consensus 205 ~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~--~~~s~~~~~~----------~~~vi~l~ 272 (462)
T PLN02187 205 TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN--PFVSMGKFAS----------IVPVLTLA 272 (462)
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CceeHHHhcc----------CCcEEEEe
Confidence 78999999999999999999999999999999999999999999888654 4445544421 24699999
Q ss_pred CCCcCCCCCccEEEEEEecC-HHH---HHHHHHhcccC----CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNN-ERV---VSAATKMSSFG----LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~-~~~---~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 341 (464)
||||+|++||+|+||+++++ +.+ .+.+......+ .++.+.|.++.+++.+.. .+++++.++.++++++.+
T Consensus 273 SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~~~l~~~r~~l 350 (462)
T PLN02187 273 GISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKNKILKHNVDLV 350 (462)
T ss_pred cchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999843 322 23333333332 247899999999997532 467899999999999999
Q ss_pred HHHHHhCCC-e-eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHH
Q 037587 342 VSGLKVAGI-R-CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQ 419 (464)
Q Consensus 342 ~~~l~~~g~-~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 419 (464)
.+.|++++. . +..|++|+|+|++++..... ...++.+++..++.++||.|+||..|+ .++||||+++. +++.++
T Consensus 351 ~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg--~~~~iRis~~~-~~e~l~ 426 (462)
T PLN02187 351 CDRLKDIPCVVCPKKPESCTYLLTKLELSLMD-NIKDDIDFCVKLAREENLVFLPGDALG--LKNWMRITIGV-EAHMLE 426 (462)
T ss_pred HHHHhhCCCCcCCCCCCEeEEEEeecChhhCC-CCCCHHHHHHHHHhhCCEEEECccccC--CCCeEEEEeCC-CHHHHH
Confidence 999998743 2 23678889999988632111 111233577788889999999999996 47899999995 789999
Q ss_pred HHHHHHHHHHHhhCccc
Q 037587 420 VALQRIKVFAQSCNPQM 436 (464)
Q Consensus 420 ~~l~~l~~~l~~~~~~~ 436 (464)
+++++|.++++++....
T Consensus 427 ~al~rL~~~l~~~~~~~ 443 (462)
T PLN02187 427 DALERLKGFCTRHAKKT 443 (462)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999999998777433
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-51 Score=410.40 Aligned_cols=352 Identities=24% Similarity=0.414 Sum_probs=292.0
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
.++|+|+.+.+.++ ++.+.+++.+... .....|++..|.++||+++++++++.++ +.++++ +|+
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~~~~~~~I~ 119 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIR------------DGKNQYARGFGVPELNSAIAERFKKDTG--LVVDPEKEVT 119 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHh------------cCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 47899999988775 4566666655311 1246799999999999999999998766 457787 799
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|+.+...++.. |++++.++++++ +|.+|++.+++.+.. ++++|
T Consensus 120 vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~-~~~~~~~~l~~~~~~------~~k~i 191 (413)
T PLN00175 120 VTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKTVTLRPP-DFAVPEDELKAAFTS------KTRAI 191 (413)
T ss_pred EeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEECCcc-cCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999888877 999999999754 388999999988754 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|++++++||+||+|.++.|.+. +.++.++.. ..+++++++||||
T Consensus 192 ~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~---~~s~~~~~~---------~~~~vi~i~SfSK 259 (413)
T PLN00175 192 LINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD---HISMASLPG---------MYERTVTMNSLGK 259 (413)
T ss_pred EecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc---ccChhhCCC---------CcCcEEEEecchh
Confidence 9999999999999999999999999999999999999999877543 234444422 2478999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||++|+|+||++++++ +.+.+.... ..++++.+.|.++..+|++. +.++++.++.++++++.+.+.|++.|+.
T Consensus 260 ~~~~~G~RiG~~v~~~~-l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 335 (413)
T PLN00175 260 TFSLTGWKIGWAIAPPH-LTWGVRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSAKKDILVEGLKEVGFK 335 (413)
T ss_pred hccCcchheeeeEeCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 99999999999999654 444444443 23467889999999999875 3468889999999999999999999999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC---CCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC---NEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~---~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
+.+++||+|+|++++... .....+++..+++++||.+.||+.|+. .+.+++||+++. +++++++++++|+++
T Consensus 336 ~~~p~g~~f~~~~~~~~~----~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~-~~e~l~~~~~rL~~~ 410 (413)
T PLN00175 336 VYPSSGTYFVMVDHTPFG----FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK-DEETLRAAVERMKTK 410 (413)
T ss_pred ecCCCeeEEEEEeccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHHH
Confidence 999999999999985311 112346888888888999999999864 235799999995 899999999999998
Q ss_pred HH
Q 037587 429 AQ 430 (464)
Q Consensus 429 l~ 430 (464)
++
T Consensus 411 ~~ 412 (413)
T PLN00175 411 LK 412 (413)
T ss_pred Hh
Confidence 76
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=422.30 Aligned_cols=361 Identities=19% Similarity=0.330 Sum_probs=286.6
Q ss_pred CCceEEeecccc-c--c-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 35 PSGIIQMGLAEN-Q--L-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 35 ~~~~i~l~~~~n-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
..++|+|+.+++ + + +++.+.+++.+. +.....|++..|..+||++||+++.+..+ ..++++
T Consensus 145 g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~-------------~~~~~~Y~~~~G~~~lReaia~~~~~~~~--~~~~~~ 209 (517)
T PRK13355 145 GTHILKLNIGNPAPFGFRTPDEVVYDMAQQ-------------LTDTEGYSDSKGLFSARKAIMQYAQLKGL--PNVDVD 209 (517)
T ss_pred CCCeEEecCcCCCcCCCCCCHHHHHHHHHH-------------hhcCCCCCCCcChHHHHHHHHHHHHhcCC--CCCChh
Confidence 357899999543 3 3 133344443332 12345799999999999999999976543 347899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|++|+|+++++.+++.+++++||.|++++|+|+.|...+... |++++.++++++++|.+|++++++.+.. ++
T Consensus 210 ~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~-g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~ 282 (517)
T PRK13355 210 DIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLA-GGTAVHYRCDEQSEWYPDIDDIRSKITS------RT 282 (517)
T ss_pred HEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHC-CCEEEEeecCcccCCCCCHHHHHHhcCc------Cc
Confidence 9999999999999999999999999999999999999888876 9999999998877899999999998754 78
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
++|+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++. .+.++..+.+ ...+++++|
T Consensus 283 k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~--~~~s~~~~~~----------~~~vi~~~S 350 (517)
T PRK13355 283 KAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGL--EHTSIASLAP----------DLFCVTFSG 350 (517)
T ss_pred eEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCC--CcccHHHhCC----------CCeEEEEec
Confidence 9999999999999999999999999999999999999999999888754 4456655532 135778899
Q ss_pred CCcCCCCCccEEEEEEec-CHH----HHHHHHHhcc-cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037587 271 LSKDFSMPGFRVGMIYSN-NER----VVSAATKMSS-FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~-~~~----~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (464)
|||.|+++|+|+||++++ +.. +.+.+..... ...++.++|.++..+|.+.....+++.+.++. .++++.+.+.
T Consensus 351 ~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~-~~~r~~l~~~ 429 (517)
T PRK13355 351 LSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRV-YEQRELVYNA 429 (517)
T ss_pred chhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999963 222 2222332222 24477899999999997643335566665444 4567999999
Q ss_pred HHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHH
Q 037587 345 LKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 345 l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 423 (464)
|.++ |+.+.+|+||||+|++++..... ..++.+++..++.++||.|+||+.|+...++||||+++ .++++++++++
T Consensus 430 L~~~~g~~~~~p~g~fy~~~~l~~~~~~--~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~-~~~~~l~~a~~ 506 (517)
T PRK13355 430 LNAIPGISAVKPKAAFYIFPKIDVKKFN--IHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL-PRLEDLEDAMD 506 (517)
T ss_pred HhcCCCcccCCCCeeeEEEeecCcccCC--CCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC-CCHHHHHHHHH
Confidence 9988 89999999999999998742100 11233577788889999999999998666889999997 58999999999
Q ss_pred HHHHHHHhhC
Q 037587 424 RIKVFAQSCN 433 (464)
Q Consensus 424 ~l~~~l~~~~ 433 (464)
+|++++++++
T Consensus 507 rl~~~~~~~~ 516 (517)
T PRK13355 507 RLADFFSYYR 516 (517)
T ss_pred HHHHHHHHhh
Confidence 9999998654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=408.68 Aligned_cols=350 Identities=26% Similarity=0.405 Sum_probs=287.9
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
.++++|+.|.+.++ ++.+.+++.+.... ....+|+++.|.++||+++|+++++.++ ++++++ +|+
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~~vi 95 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAAEN-----------PENHRYPSYEGMLAYRQAVADWYKRRFG--VELDPETEVL 95 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCeEE
Confidence 47799999998875 45566665543211 2346899999999999999999997766 445666 699
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|+.+...+... |++++.++++.+++|.+|++++++.+.. ++++|
T Consensus 96 ~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-G~~v~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v 168 (383)
T TIGR03540 96 SLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFA-GGEPYEMPLKEENGFLPDFDAIPEDIAK------KAKLM 168 (383)
T ss_pred ECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhc-CCEEEEEecCcccCCccCHHHHHhhccc------cceEE
Confidence 9999999999999999999999999999999998888776 9999999998766788999999888754 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|++++++||+||+|.++.|.+. ...++..+.. ..+++++++||||
T Consensus 169 ~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~--~~~~~~~~~~---------~~~~~i~~~SfSK 237 (383)
T TIGR03540 169 FINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGY--KAPSFLEVDG---------AKDVGIEFHSLSK 237 (383)
T ss_pred EEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCC--CCcCcccCCC---------cccCEEEEEeccc
Confidence 9999999999999999999999999999999999999999877554 3344443311 2367899999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||++|+|+||+++++ .+.+.+...... ..++.+.|.++..++.+. .++++++++.++++++.+.+.|++.|+.
T Consensus 238 ~~g~~GlRiG~~i~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 313 (383)
T TIGR03540 238 TYNMTGWRIGMAVGNA-DLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALKKIGID 313 (383)
T ss_pred ccCCccceeeEEeCCH-HHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 9999999999999854 455545444322 346778999999999874 4568888999999999999999999999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
+.++++|+|+|++++...+ ..+++..+++++||.|+||..|+...++++||+++. +++++.+++++|++
T Consensus 314 ~~~~~~~~~~~~~l~~~~~------~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 314 VEKPKATFYVWVPVPEGYT------SAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PDERLEEAVARIKK 382 (383)
T ss_pred ecCCCcceEEEEECCCCCC------HHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CHHHHHHHHHHHhh
Confidence 9999999999999985322 235788888788999999999976557899999984 78899999988865
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=408.63 Aligned_cols=351 Identities=24% Similarity=0.386 Sum_probs=287.2
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i 112 (464)
..++|+|+.++++++ ++.+.+++.+.... .....|+++.|.++||+++++++++.+| ..++++ +|
T Consensus 30 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~i 96 (385)
T PRK09276 30 GVDVISLGIGDPDLPTPDHIIEAMCKAVED-----------PENHQYPSYEGMLEFRKAVADWYKRRFG--VELDPETEV 96 (385)
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcE
Confidence 346899999998875 45666666553210 2346799999999999999999998766 446776 59
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++.++++.+++|.+|++++++.+.. ++++
T Consensus 97 i~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~g~~~d~~~l~~~~~~------~~~~ 169 (385)
T PRK09276 97 ISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFA-GGEPYFMPLKEENGFLPDLDAIPEDVAK------KAKL 169 (385)
T ss_pred EEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHc-CCEEEEEecCCCCCCcCCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999998888776 9999999997666788999999887654 7899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|+++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. ...++..+.. ..+++++++|||
T Consensus 170 v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~S~S 238 (385)
T PRK09276 170 MFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGY--KPPSFLEVPG---------AKDVGIEFHSLS 238 (385)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCC--CCCChhccCC---------CcCCEEEEecch
Confidence 99999999999999999999999999999999999999998877644 3344444311 236789999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.||++|+|+||+++++ .+.+.+.+.... ..++.+.|.++..++.+. .+++++.++.++++++.+.+.|++.|+
T Consensus 239 K~~g~~GlRiG~~i~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 314 (385)
T PRK09276 239 KTYNMTGWRIGFAVGNA-DLIAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEGLRKLGL 314 (385)
T ss_pred hhcCCcchhheeeeCCH-HHHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999854 455555444332 235668899998888752 456888899999999999999999999
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
++.++++|+|+|++++...+ ..+++.++++++||.|+||..|+...++++||+++. +++++.+++++|++
T Consensus 315 ~~~~~~~~~~~~v~~~~~~~------~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (385)
T PRK09276 315 EVEPPKATFYVWAPVPKGYT------SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK 384 (385)
T ss_pred cccCCCcceEEEEECCCCCC------HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence 88888999999999985422 235778888778999999999976557899999984 88899999998864
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=407.46 Aligned_cols=363 Identities=21% Similarity=0.356 Sum_probs=287.3
Q ss_pred CCCCceEEeeccccc----c-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 33 HNPSGIIQMGLAENQ----L-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 33 ~~~~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
....++|+|+++.+. + +++.+.+++.+.... .....|++..|.++||++||+++++.+| +++
T Consensus 29 ~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~ 95 (409)
T PLN00143 29 DDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRS-----------AKFNSYAPTGGILPARRAIADYLSNDLP--YQL 95 (409)
T ss_pred CCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhC-----------cCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCC
Confidence 345678999999886 4 456676766553211 2345798888999999999999988765 457
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
++++|++|+|+++++.+++.+++++||.|++++|+|+.|...+... |++++.++++++++|.+|+++|++++..
T Consensus 96 ~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~----- 169 (409)
T PLN00143 96 SPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFH-HLEIRHFDLLPEKGWEVDLDAVEAIADE----- 169 (409)
T ss_pred CHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHc-CCEEEEEeccCCCCCcCCHHHHHHhccc-----
Confidence 8999999999999999999999999999999999999998888876 9999999987666899999999887754
Q ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
++++++++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. .+.++..+ . ..+++++
T Consensus 170 -~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~-~---------~~~~vi~ 236 (409)
T PLN00143 170 -NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK--PFVPMGLF-A---------SIVPVIT 236 (409)
T ss_pred -CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC--CCcchhhh-c---------ccCcEEE
Confidence 678899999999999999999999999999999999999999999877654 33333333 2 2258999
Q ss_pred EcCCCcCCCCCccEEEEEEec-CHHH------HHHHHHhcc-cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSN-NERV------VSAATKMSS-FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKE 339 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~-~~~~------~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 339 (464)
++||||.|++||+|+||++++ ++.+ .+.+.+... ....+.++|.++..++.+.. ..++++.++.++++++
T Consensus 237 ~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~~~ 314 (409)
T PLN00143 237 LGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTINILRAALA 314 (409)
T ss_pred EccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHHHHHHHHHH
Confidence 999999999999999999984 3322 222232222 22257799999999997632 3457777888888888
Q ss_pred HHHHHHHhCCC-e-eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHH
Q 037587 340 MLVSGLKVAGI-R-CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEET 417 (464)
Q Consensus 340 ~l~~~l~~~g~-~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~ 417 (464)
.+.+.|.+++. . +.+|++|+|+|++++.... .......+++..++.++||.|.||..|+ .++|+||+++. ++++
T Consensus 315 ~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pg~~f~--~~~~iRi~~~~-~~~~ 390 (409)
T PLN00143 315 FCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLL-EDIEDDMEFCLKLAKEESLIILPGVTVG--LKNWLRITFAV-EQSS 390 (409)
T ss_pred HHHHHHhcCCCCCCCCCCCeeEEEEEecchhhc-CCCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEEcC-CHHH
Confidence 89999988743 2 2367899999999975211 0111234577778788999999999996 46899999994 7999
Q ss_pred HHHHHHHHHHHHHhhC
Q 037587 418 LQVALQRIKVFAQSCN 433 (464)
Q Consensus 418 l~~~l~~l~~~l~~~~ 433 (464)
+++++++|+++++++.
T Consensus 391 l~~al~rl~~~l~~~~ 406 (409)
T PLN00143 391 LEDGLGRLKSFCGRHA 406 (409)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998654
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-51 Score=407.79 Aligned_cols=362 Identities=22% Similarity=0.315 Sum_probs=290.6
Q ss_pred CCCCCCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC-
Q 037587 29 YDQLHNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK- 106 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~- 106 (464)
+.....+.++|+|+.|+|++. ++.+.+.+.+.... .....|++ .|.++||+++|+++++.+| +.
T Consensus 37 ~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~-----------~~~~~Y~~-~G~~~lr~aia~~~~~~~g--~~~ 102 (410)
T PRK06290 37 AKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKK-----------PENRGYAD-NGIQEFKEAAARYMEKVFG--VKD 102 (410)
T ss_pred HhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCC-CCcHHHHHHHHHHHHHHcC--CCc
Confidence 333334557899999999885 45566655542110 12456875 7999999999999988765 44
Q ss_pred CCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 107 FDPN-KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 107 ~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
++++ +|++|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++.++++++++|.+|++.+++.+.+
T Consensus 103 ~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~l~~~~~~--- 178 (410)
T PRK06290 103 IDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYY-GGEVYNLPLLEENNFLPDLDSIPKDIKE--- 178 (410)
T ss_pred CCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHc-CCEEEEEecCCCcCCcCCHHHHHHhhcc---
Confidence 6776 7999999999999999999999999999999999998888877 9999999998777888999999988754
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
++++|+++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. +.++.++.. ..+++
T Consensus 179 ---~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~---~~s~~~~~~---------~~~~~ 243 (410)
T PRK06290 179 ---KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK---PLSFLSVPG---------AKEVG 243 (410)
T ss_pred ---cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC---CcChhcCCC---------ccccE
Confidence 789999999999999999999999999999999999999999999877543 234443321 23678
Q ss_pred EEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC--CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG--LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
++++||||.||++|+|+||+++++ .+.+.+......+ +++.++|.++..++.+.++ +++.++.++++++.+.+
T Consensus 244 I~i~SfSK~~g~~GlRiG~ii~~~-~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~~~~~~~~~~~l~~ 318 (410)
T PRK06290 244 VEIHSLSKAYNMTGWRLAFVVGNE-LIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEI----TEKIREKYSRRLDKLVK 318 (410)
T ss_pred EEEeechhhcCCchhheEeEEeCH-HHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHH----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999954 4555555444332 3456899999999988654 67788889999999999
Q ss_pred HHHhCCCeeecCCccEEEEEecCcccccC-ChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHH
Q 037587 344 GLKVAGIRCLKSNAGLFCWVDMRHLLVSN-TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQV 420 (464)
Q Consensus 344 ~l~~~g~~~~~~~~g~f~~~~l~~~~~~~-~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~ 420 (464)
.|++.|+.+.++++|+|+|++++...... ......+++..|+++.+|.+.||+.|+ +|+||+++. .++|+.++
T Consensus 319 ~L~~~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~~ 394 (410)
T PRK06290 319 ILNEVGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEEDR 394 (410)
T ss_pred HHHhCCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchhH
Confidence 99999999999999999999998643210 001344688889877778888988663 699999985 36799999
Q ss_pred HHHHHHHHHHhh
Q 037587 421 ALQRIKVFAQSC 432 (464)
Q Consensus 421 ~l~~l~~~l~~~ 432 (464)
++++|++.+...
T Consensus 395 ~~~~l~~~~~~~ 406 (410)
T PRK06290 395 ILEEIKRRLSDV 406 (410)
T ss_pred HHHHHHHHHhhc
Confidence 999999988764
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=408.20 Aligned_cols=365 Identities=21% Similarity=0.380 Sum_probs=296.2
Q ss_pred CCCCceEEeeccccc-----ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC----C
Q 037587 33 HNPSGIIQMGLAENQ-----LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG----N 103 (464)
Q Consensus 33 ~~~~~~i~l~~~~n~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~----~ 103 (464)
.+..++|+|+.+.+. .+++.+.+++.+.... .....|+++.|.++||++||+++++.++ .
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~ 98 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS-----------QECNGYPPTVGSPEAREAVATYWRNSFVHKESL 98 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc-----------CCCCCCCCCCCcHHHHHHHHHHHHhhccccccc
Confidence 456789999999765 3566677766653211 2356899999999999999999987543 1
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHH
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQA 183 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 183 (464)
+..+++++|++|+|+++++.+++.+++++||.|+++.|+|..+...++.. |++++.++++++++|.+|++.+++.+.+
T Consensus 99 ~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~- 176 (412)
T PTZ00433 99 KSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAY-GIEMRFYNCRPEKDWEADLDEIRRLVDD- 176 (412)
T ss_pred cCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHc-CCEEEEEecCccccCcCCHHHHHHHhcc-
Confidence 34578999999999999999999999999999999999999999888877 9999999998767789999999887754
Q ss_pred hhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCC
Q 037587 184 QTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS 263 (464)
Q Consensus 184 ~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (464)
++++|+++|||||||.++|.+++++|+++|+++|++||+||+|.++.|.+. .+.++..+.. ..
T Consensus 177 -----~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~----------~~ 239 (412)
T PTZ00433 177 -----RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA--TFTSVADFDT----------TV 239 (412)
T ss_pred -----CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC--CccchhhccC----------CC
Confidence 789999999999999999999999999999999999999999998877654 3345444421 23
Q ss_pred cEEEEcCCCcCCCCCccEEEEEEe--c---CHHHHHHHHHhcc-cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHH
Q 037587 264 RIHIVYSLSKDFSMPGFRVGMIYS--N---NERVVSAATKMSS-FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKR 337 (464)
Q Consensus 264 ~vi~l~S~SK~~g~~GlRiG~l~~--~---~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 337 (464)
++++++||||.||+||+|+||+++ + .+.+.+.+.+... .+.++++.|.++..++.+. . ..++++.++.++++
T Consensus 240 ~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~~~~~~~~~~~~ 317 (412)
T PTZ00433 240 PRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT-P-QEHLEQIVAKLEEG 317 (412)
T ss_pred ceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC-c-HHHHHHHHHHHHHH
Confidence 588999999999999999999997 2 1334444444433 3468899999999998763 2 56788899999999
Q ss_pred HHHHHHHHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHH
Q 037587 338 KEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEE 416 (464)
Q Consensus 338 ~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e 416 (464)
++.+.+.|++. |+.+.++++|+|+|++++...-. ......+++..+++++||.|+||+.|+. ++++||+++. .++
T Consensus 318 r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e 393 (412)
T PTZ00433 318 AMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFR-DIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISR-PVE 393 (412)
T ss_pred HHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcC-CCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecC-CHH
Confidence 99999999885 78888899999999998742100 0112346788888778999999999964 6899999995 688
Q ss_pred HHHHHHHHHHHHHHhhC
Q 037587 417 TLQVALQRIKVFAQSCN 433 (464)
Q Consensus 417 ~l~~~l~~l~~~l~~~~ 433 (464)
++++++++|.+++++++
T Consensus 394 ~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 394 VLREAVERIKAFCERHK 410 (412)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998765
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-51 Score=406.80 Aligned_cols=355 Identities=22% Similarity=0.421 Sum_probs=291.6
Q ss_pred CceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
.++|+|+.+++++++ +.+.+++..... .....|++..|.++||+++|+++++.+| +.++++ +|+
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~ 85 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLE------------QGYTSYTANAGLLELRQEIAKYLKKRFA--VSYDPNDEII 85 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 478999999998853 444555444211 1246798888999999999999998776 446675 799
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++.+++.+++++||.|++++|+|+.+...+... |.+++.++++.+++|.+|++++++++.+ +++++
T Consensus 86 ~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v 158 (378)
T PRK07682 86 VTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLA-GGVPVPVATTLENEFKVQPAQIEAAITA------KTKAI 158 (378)
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHHc-CCEEEEeecCCccCCCCCHHHHHhhcCc------ccEEE
Confidence 9999999999999999999999999999999998888776 9999999987666789999999998754 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.++|.+++++|+++|+++++++|+||+|.++.|++. +.++..+.. ..+++++++||||
T Consensus 159 ~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~---------~~~~~i~~~S~SK 226 (378)
T PRK07682 159 LLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA---YTSFASIKG---------MRERTILISGFSK 226 (378)
T ss_pred EEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC---CCChhhccc---------ccCCEEEEecCcc
Confidence 9999999999999999999999999999999999999999877543 234333321 2368999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||++|+|+||++++++ +.+.+..... .+.++.+.|.++..+|++.. .++++.++.++++++.+.+.|+++|+.
T Consensus 227 ~~~~~GlR~G~~~~~~~-~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~ 302 (378)
T PRK07682 227 GFAMTGWRLGFIAAPVY-FSEAMLKIHQYSMMCAPTMAQFAALEALRAGN---DDVIRMRDSYRKRRNFFVTSFNEIGLT 302 (378)
T ss_pred cccChhhhhhhhhcCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 99999999999999554 5555543332 34578899999999998753 347788889999999999999999999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.+|++|+|+|++++... ....+++..+++++||.|+||..|+...++++||+++. +++++++++++|++++++
T Consensus 303 ~~~p~g~~~~~~~~~~~~-----~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 303 CHVPGGAFYAFPSISSTG-----LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred cCCCCeeEEEEEeccCCC-----CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 888999999999885311 01235778887788999999999976567899999996 789999999999999876
Q ss_pred hC
Q 037587 432 CN 433 (464)
Q Consensus 432 ~~ 433 (464)
.+
T Consensus 377 ~~ 378 (378)
T PRK07682 377 KK 378 (378)
T ss_pred cC
Confidence 53
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=404.88 Aligned_cols=348 Identities=20% Similarity=0.381 Sum_probs=286.8
Q ss_pred CceEEeecccccccH-HHHHH-HHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 36 SGIIQMGLAENQLSF-DLLES-WLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+++|+|+.+++++++ +.+.+ ++... ......|++..|.++||++||+++++.++ +.+++++|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~-------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~i~ 93 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDA-------------KKGHTRYTDSGGDVELIEEIIKYYSKNYD--LSFKRNEIM 93 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHH-------------hcCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 467999999988754 33333 32221 12456899999999999999999987766 457899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|+.+...+... |.+++.+++.++++|.+|++.+++.+++ ++++|
T Consensus 94 it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v 166 (384)
T PRK06348 94 ATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMV-GGKPIILETYEEDGFQINVKKLEALITS------KTKAI 166 (384)
T ss_pred EcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHc-CCEEEEecCCcCcCCcCCHHHHHHhhCc------CccEE
Confidence 9999999999999999999999999999999999998877 9999999886556788999999988754 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.++|.+++++|+++|++++++||+||+|.++.|+.. +.++..+.. ..+++++++||||
T Consensus 167 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~---------~~~~vi~~~SfSK 234 (384)
T PRK06348 167 ILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED---FVPMATLAG---------MPERTITFGSFSK 234 (384)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC---ccchhhcCC---------CcCcEEEEecchh
Confidence 9999999999999999999999999999999999999999877543 234333321 2478999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI 350 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 350 (464)
+||+||+|+||+++++ .+.+.+..... .++++++.|.++..++.+. ++++++.++.++++++.+.+.|++. ++
T Consensus 235 ~~~l~GlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~~~~~~L~~~~~~ 310 (384)
T PRK06348 235 DFAMTGWRIGYVIAPD-YIIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKRLEYAYKRIESIPNL 310 (384)
T ss_pred ccCCccccceeeecCH-HHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999954 45555554432 3457889999999998753 4567888899999999999999887 77
Q ss_pred eeecCCccEEEEEecCcc-cccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHL-LVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~-~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
.+.++++|+|+|++++.. .+ ..+++..+++++||.|.||+.|+..+++++||+++ .+++++++++++|+++
T Consensus 311 ~~~~p~gg~~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 311 SLHPPKGSIYAFINIKKTGLS------SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT-VGIEVLEEAFNRIEKM 382 (384)
T ss_pred eeccCCeeEEEEEecccCCCC------HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec-CCHHHHHHHHHHHHhh
Confidence 888999999999999742 21 23577888778899999999998655789999998 4899999999999764
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=406.29 Aligned_cols=366 Identities=22% Similarity=0.375 Sum_probs=295.0
Q ss_pred CCCCCCceEEeeccccc----c-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCC
Q 037587 31 QLHNPSGIIQMGLAENQ----L-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKV 105 (464)
Q Consensus 31 ~~~~~~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~ 105 (464)
...++.++|+|+++++. + +++.+.+++..... ......|++..|.++||+++++++++.++ +
T Consensus 26 ~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~ 92 (409)
T PLN02656 26 DEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQ-----------SNKFNGYAPTVGLPQARRAIAEYLSRDLP--Y 92 (409)
T ss_pred ccccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCCCCHHHHHHHHHHHHHhcC--C
Confidence 44567899999999886 3 35666666555321 02356898889999999999999998765 4
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 106 KFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 106 ~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
.+++++|++|+|+++++..++.+++++||.|++++|+|+.+...+... |++++.++++++++|.+|++.+++.+.+
T Consensus 93 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~--- 168 (409)
T PLN02656 93 KLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFR-HLEVRYVDLLPEKGWEVDLDAVEALADQ--- 168 (409)
T ss_pred CCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHc-CCEEEEEeCCCcCCCCCCHHHHHHHhcc---
Confidence 578999999999999999999999999999999999999888777766 9999999987666789999999987754
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
++++++++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. .+.++..+ . ...++
T Consensus 169 ---~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~---------~~~~v 233 (409)
T PLN02656 169 ---NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN--PFVPMGVF-G---------SIVPV 233 (409)
T ss_pred ---CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CcccHHHh-c---------ccCcE
Confidence 678999999999999999999999999999999999999999999888654 33444333 1 23689
Q ss_pred EEEcCCCcCCCCCccEEEEEEecC-------HHHHHHHHHhcc-cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYSNN-------ERVVSAATKMSS-FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKR 337 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~~~-------~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 337 (464)
++++||||.|++||+|+||+++++ +.+.+.+.+... ...++.+.|.++..++++.. ++++++.++.++++
T Consensus 234 i~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~ 311 (409)
T PLN02656 234 LTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTINILKQS 311 (409)
T ss_pred EEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHH
Confidence 999999999999999999999852 345555554433 33578899999999997532 45688889999999
Q ss_pred HHHHHHHHHhCC-Ce-eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCH
Q 037587 338 KEMLVSGLKVAG-IR-CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITE 415 (464)
Q Consensus 338 ~~~l~~~l~~~g-~~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~ 415 (464)
++.+.+.|++++ +. +.+|+||+|+|++++..... ......+++..++.++||.|.||+.|+ .++|+||+++. ++
T Consensus 312 r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg--~~~~iRi~~~~-~~ 387 (409)
T PLN02656 312 SDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVG--LKNWLRITFAA-DP 387 (409)
T ss_pred HHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcC--CCCeEEEEeCC-CH
Confidence 999999999873 33 35789999999999742110 001123466677788999999999996 36899999995 89
Q ss_pred HHHHHHHHHHHHHHHhhCc
Q 037587 416 ETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 416 e~l~~~l~~l~~~l~~~~~ 434 (464)
+++++++++|++++.++.+
T Consensus 388 e~l~eal~rl~~~~~~~~~ 406 (409)
T PLN02656 388 SSLEEALGRIKSFYLRHSK 406 (409)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999987664
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=405.13 Aligned_cols=354 Identities=21% Similarity=0.361 Sum_probs=284.3
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i 112 (464)
..++|+|+.|+++++ ++.+.+++... ......|+++.|.++||+++|+++++.++....++++ +|
T Consensus 27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~-------------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i 93 (393)
T TIGR03538 27 SKPPIALSIGEPKHPTPAFVLEALREN-------------LHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHV 93 (393)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHH-------------hhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceE
Confidence 357799999999885 46677776653 1345689999999999999999998876643226775 89
Q ss_pred EEeCChHHHHHHHHHHhcCCCCe--EEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 113 VLTAGSTAANETLMFCLADPGDA--FLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~--Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
++|+|+++++..++.+++++||. |++++|+|+.|...+... |++++.++++++++|.+|++++++.+.+ ++
T Consensus 94 ~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~ 166 (393)
T TIGR03538 94 LPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLA-GAEPYFLNCTAENGFLPDFDAVPESVWR------RC 166 (393)
T ss_pred EECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhc-CCeEEEeeccccCCCCCCHHHHHHHHhh------cc
Confidence 99999999999999999999986 999999999998888766 9999999998777899999999988765 78
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
++|+++|||||||.++|.+++++|+++|++++++||+||+|.++.+.+.. ...+........+ .+..+++++++|
T Consensus 167 k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~vi~i~S 241 (393)
T TIGR03538 167 QLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGN-PPAGLLQAAAQLG----RDDFRRCLVFHS 241 (393)
T ss_pred eEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCC-CCcCHHHhccccc----ccccccEEEEec
Confidence 99999999999999999999999999999999999999999987765310 1223222211110 013478999999
Q ss_pred CCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 271 LSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
|||.|+++|+|+||++++++ +.+.+.+... .+.++++.|.++...+.+. +++++.++.++++++.+.+.|++.
T Consensus 242 ~SK~~~~~GlRvG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~L~~~ 316 (393)
T TIGR03538 242 LSKRSNLPGLRSGFVAGDAE-ILKAFLRYRTYHGCAMPIPTQLASIAAWNDE----QHVRENRALYREKFAAVLEILGQV 316 (393)
T ss_pred chhhcCCcccceEEEecCHH-HHHHHHHHHHhhccCcCHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999654 4444444433 2357788999988888653 457888899999999999999875
Q ss_pred CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEeecCCHHHHHHHH
Q 037587 349 GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC------NEPGWFRICFANITEETLQVAL 422 (464)
Q Consensus 349 g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Ris~~~~~~e~l~~~l 422 (464)
+.+..+++|+|+|++++. +..+++..+++++||.|.||+.|+. .+.+++||+++. +++++++++
T Consensus 317 -~~~~~p~gg~f~~~~~~~--------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~l 386 (393)
T TIGR03538 317 -LDLELPDAGFYLWPKVPG--------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEAA 386 (393)
T ss_pred -CcccCCCeeEEEEEECCC--------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHHH
Confidence 556678999999999981 1235778888788999999998862 235799999986 789999999
Q ss_pred HHHHHH
Q 037587 423 QRIKVF 428 (464)
Q Consensus 423 ~~l~~~ 428 (464)
++|+++
T Consensus 387 ~~l~~~ 392 (393)
T TIGR03538 387 ERIRSF 392 (393)
T ss_pred HHHHHh
Confidence 999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=405.94 Aligned_cols=362 Identities=21% Similarity=0.379 Sum_probs=292.3
Q ss_pred CCceEEeeccccc----cc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 35 PSGIIQMGLAENQ----LS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 35 ~~~~i~l~~~~n~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
..++|+|+.+++. ++ ++.+.+++.+... ......|++..|.+++|+++|+++++.++ .++++
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~-----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~ 117 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALR-----------SGKYNSYSTCVGLLPARRAIAEYLSRDLP--YELST 117 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHH-----------cCcCCCCCCCccCHHHHHHHHHHHhhccC--CCCCh
Confidence 4579999999764 32 3555565554311 02345799989999999999999987665 45789
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
++|++|+|++++|.+++.+++++||+|++++|+|+.|...+... |++++.+++.++++|.+|++.+++.+.. +
T Consensus 118 ~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~ 190 (430)
T PLN00145 118 DDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFS-GLEVRHFDLLPERGWEVDLEGVEALADE------N 190 (430)
T ss_pred hhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeeCCcccCCcCCHHHHHHHhCc------C
Confidence 99999999999999999999999999999999999998877766 9999999987777899999999987754 7
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. .+.++..+. ...++++++
T Consensus 191 ~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~--~~~~~~~~~----------~~~~vi~~~ 258 (430)
T PLN00145 191 TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSK--PFVPMGVFG----------EVAPVLTLG 258 (430)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCC--Cccchhhhc----------ccCcEEEEe
Confidence 89999999999999999999999999999999999999999999888654 444544431 236899999
Q ss_pred CCCcCCCCCccEEEEEEec-CHHHH------HHHHHhcccC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSN-NERVV------SAATKMSSFG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~-~~~~~------~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 341 (464)
||||.|++||||+||++++ ++.+. ..++.....+ .++++.|.++..+|++.. +++++++++.++++++.+
T Consensus 259 S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 336 (430)
T PLN00145 259 SISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADIC 336 (430)
T ss_pred ccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999973 33222 2233333333 357799999999998632 567888999999999999
Q ss_pred HHHHHhC-CCee-ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHH
Q 037587 342 VSGLKVA-GIRC-LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQ 419 (464)
Q Consensus 342 ~~~l~~~-g~~~-~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 419 (464)
.+.|+++ |+.+ ..|++++|+|++++..... ...++.+++.++++++||.|.||..|+. ++|+||+++. +++.++
T Consensus 337 ~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~-~~~~l~ 412 (430)
T PLN00145 337 YEKIKEIKCITCPHKPEGSMFVMVKLDLSCLS-GIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAI-DPPSLE 412 (430)
T ss_pred HHHHhcCCCCCCCcCCCeeeEEEeccChhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHH
Confidence 9999987 7775 4689999999999742100 1112346888899899999999999974 6899999994 889999
Q ss_pred HHHHHHHHHHHhhCc
Q 037587 420 VALQRIKVFAQSCNP 434 (464)
Q Consensus 420 ~~l~~l~~~l~~~~~ 434 (464)
+++++|++++++++.
T Consensus 413 ~al~rl~~~~~~~~~ 427 (430)
T PLN00145 413 DGLERLKSFCLRHAK 427 (430)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988874
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=404.05 Aligned_cols=350 Identities=22% Similarity=0.365 Sum_probs=282.1
Q ss_pred CceEEeecccccccH-H-HHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cE
Q 037587 36 SGIIQMGLAENQLSF-D-LLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KL 112 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i 112 (464)
.++|+|+.+.+..++ + .+....... . -.....|+++.|.++||+++|+++++.++ ++++++ +|
T Consensus 35 ~~~i~l~~g~p~~~~p~~~~~~~~~~~-~-----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~~i 100 (394)
T PRK05942 35 LDLIDLGMGNPDGAAPQPVIEAAIAAL-A-----------DPQNHGYPPFEGTASFRQAITDWYHRRYG--VELDPDSEA 100 (394)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHH-h-----------CCCCccCCCCCCCHHHHHHHHHHHHHHHC--CCcCCCCeE
Confidence 468999987544432 2 233322221 0 02346799999999999999999988766 456787 59
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||+|++++|+|+.+...+... |++++.++++.+++|.+|++++++.+.+ ++++
T Consensus 101 ~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 173 (394)
T PRK05942 101 LPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIA-GAQIYPIILKPENDWLIDLSSIPEEVAQ------QAKI 173 (394)
T ss_pred EEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCEEEEeecCCccCCccCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999988877766 9999999998777899999999988754 8899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|+++|||||||.++|.+++++|+++|++++++||+||+|.++.+++. ...++.++.. ..+++++++|||
T Consensus 174 i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~SfS 242 (394)
T PRK05942 174 LYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY--QPTSLLEIPG---------AKDIGVEFHTLS 242 (394)
T ss_pred EEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCCChhhCCC---------ccccEEEEecch
Confidence 99999999999999999999999999999999999999998877543 3334433311 235788999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.||++|+|+||++++ +.+.+.+..... .+++++++|.++..+++.. .+++++.++.++++++.+.+.|++.|+
T Consensus 243 K~~~~~GlRiG~i~~~-~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~ 318 (394)
T PRK05942 243 KTYNMAGWRVGFVVGN-RHIIQGLRTLKTNLDYGIFSALQKAAETALQLP---DSYLQQVQERYRTRRDFLIQGLGELGW 318 (394)
T ss_pred hccCChhhheeeeecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999985 455555555443 3457788999999999742 557888899999999999999998899
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
.+.++++|+|+|++++.... ..+++.++++++||.|.||+.|+...++|+||+++. +.+.+.+++++|.++
T Consensus 319 ~~~~~~~~~f~~~~~~~~~~------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 319 NIPPTKATMYLWVPCPVGMG------STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQA 389 (394)
T ss_pred eecCCCeeeEEEEECCCCCC------HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence 88889999999999985322 224667778889999999999976557899999984 678888888888764
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=392.96 Aligned_cols=330 Identities=26% Similarity=0.408 Sum_probs=282.1
Q ss_pred ceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
++++|++||||+++ +.+.+.++.. ...+.+||++ ...+|+++++++++. +++++|+++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~-------------~~~~~rYPd~-~~~~l~~a~a~~~~~-------~~~~~V~~g 81 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAA-------------LDKLNRYPDP-DYRELRAALAEYYGV-------VDPENVLVG 81 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHH-------------HHhhccCCCC-cHHHHHHHHHHHhCC-------CCcceEEEc
Confidence 68999999999975 6666666553 2457899988 569999999999962 578999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEE
Q 037587 116 AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil 195 (464)
+|++++|..++++++.+||+|+++.|+|+.|...++.. |++++.+++.+ |.+|++.+.+.+.+ ++++|++
T Consensus 82 nGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~-g~~~~~v~~~~---~~~d~~~~~~~~~~------~~~lv~i 151 (356)
T COG0079 82 NGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLA-GAEVVKVPLKE---FRLDLDAILAAIRD------KTKLVFL 151 (356)
T ss_pred CChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhc-CCeEEEecccc---cccCHHHHHHhhhc------CCCEEEE
Confidence 99999999999999999999999999999999998877 99999999873 88999999998875 7899999
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC
Q 037587 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF 275 (464)
Q Consensus 196 ~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~ 275 (464)
||||||||..++.++++++++.+.+ +.++|+||+|.+ |.+. +...++. .++|+++++||||+|
T Consensus 152 ~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~e--F~~~-----~~~~l~~---------~~~nlivlRTfSKa~ 214 (356)
T COG0079 152 CNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIE--FSPE-----SSLELLK---------YPPNLIVLRTFSKAF 214 (356)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhh--cCCc-----hhhhhcc---------CCCCEEEEEecHHhh
Confidence 9999999999999999999999988 899999999998 5443 2222333 237899999999999
Q ss_pred CCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eec
Q 037587 276 SMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR-CLK 354 (464)
Q Consensus 276 g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~ 354 (464)
|++|+|+||+++ ++.+.+.+++...+|++|.+++.++.+++++.++ +++.++.+...|+++.+.|+.+|+. +++
T Consensus 215 gLAGlRlGy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~----~~~~~~~~~~~r~rl~~~l~~~~~~~v~p 289 (356)
T COG0079 215 GLAGLRVGYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDADY----LEESVERIREERERLYAALKALGLFGVFP 289 (356)
T ss_pred hcchhceeeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHHHHHHHhCCCCeecC
Confidence 999999999988 6678888999999999999999999999999754 7888888999999999999999855 888
Q ss_pred CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 355 SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 355 ~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+++| |++++++.. . ..++.+.|+ ++||.||.+.. ....++|+||+++ +++++++++++|+++++.
T Consensus 290 S~aN-Fvlv~~~~~------~-~~~l~~~L~-~~giivR~~~~-~~~~~~~lRitvg--t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 290 SQAN-FVLVRVPDA------E-AAALAEALL-KKGILVRDCSS-VGLLPGYLRITVG--TPEENDRLLAALREVLKG 354 (356)
T ss_pred CCCc-EEEEECCCc------c-HHHHHHHHH-HCCEEEEeCCC-CCCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 8876 999999851 1 123556665 67999999876 4456789999999 688899999999998865
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=408.00 Aligned_cols=378 Identities=20% Similarity=0.332 Sum_probs=291.8
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
+++|+|+.+.+.+|.+.+..+.+..... . -.....|+++.|.++||++||+++.+..| +++++++|++|
T Consensus 129 p~~i~~~~~~~~fp~~~i~~a~~~l~~~-----~----~~~~~~Y~~s~G~~~lReaIA~~~~~r~g--~~~~pe~I~iT 197 (534)
T PLN02231 129 PSLLDKSETHGLFSADAIERAWQILDQI-----P----GRATGAYSHSQGIKGLRDAIAAGIEARDG--FPADPNDIFLT 197 (534)
T ss_pred CccCCCCCccccCCHHHHHHHHHHHHhc-----C----CccccCcCCCCCcHHHHHHHHHHHHhccC--CCCCcccEEEe
Confidence 4667777666666666555544321100 0 02356799999999999999999987765 56889999999
Q ss_pred CChHHHHHHHHHHhcC-CCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 116 AGSTAANETLMFCLAD-PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~-~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
+|+++++..++.+++. +||.|+++.|+|+.|...+... |.++++++++++++|.+|+++|++.+++....+.++++++
T Consensus 198 ~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~-g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv 276 (534)
T PLN02231 198 DGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALH-GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV 276 (534)
T ss_pred CCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHc-CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence 9999999999999984 7999999999999999988877 9999999998777899999999999976544445789999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC-CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS-PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++|||||||.++|.+++++|+++|++++++||+||+|.++.|.+ . .+.++.++..+++. .....++++++||||
T Consensus 277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~--~~~s~~~~~~~~g~---~~~~~~vi~l~S~SK 351 (534)
T PLN02231 277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDK--KFHSFKKVARSMGY---GEKDISLVSFQSVSK 351 (534)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCC--CcccHHHHHhhhcc---ccCCceEEEEeccCc
Confidence 99999999999999999999999999999999999999988853 3 45566655432100 001236999999999
Q ss_pred CC-CCCccEEEEEEec--CHHHHHHHHHhccc-CCCChHHHHHHHHHcCCc-----hhhHHHH---HHHHHHHHHHHHHH
Q 037587 274 DF-SMPGFRVGMIYSN--NERVVSAATKMSSF-GLVSSQTQYLLSRMLSDK-----KFTCNYM---KENRKRLRKRKEML 341 (464)
Q Consensus 274 ~~-g~~GlRiG~l~~~--~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~-----~~~~~~~---~~~~~~~~~~~~~l 341 (464)
.+ |++|+|+||+++. ++.+.+.+.+.... ...+.+.|.++..+++.+ .+ .++. +..++.++++++.+
T Consensus 352 ~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y-~~~~~~~~~i~~~~~~r~~~l 430 (534)
T PLN02231 352 GYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESY-ESYMAEKDGILSSLARRAKTL 430 (534)
T ss_pred ccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 76 8999999999863 45566655444433 234567888888888642 33 4444 34578999999999
Q ss_pred HHHHHhC-CCeeecCCccEEEEEec--Cccc-ccC---ChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeecC
Q 037587 342 VSGLKVA-GIRCLKSNAGLFCWVDM--RHLL-VSN---TFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFANI 413 (464)
Q Consensus 342 ~~~l~~~-g~~~~~~~~g~f~~~~l--~~~~-~~~---~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~~ 413 (464)
.+.|+++ |+.+.+|+||||+|+++ +... ... ....+..++.++++++||.|.||+.|+.. +..+||+++. .
T Consensus 431 ~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~-~ 509 (534)
T PLN02231 431 EDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTIL-P 509 (534)
T ss_pred HHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeC-C
Confidence 9999988 89999999999999655 3210 000 00112346778888899999999999853 3457999997 5
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 037587 414 TEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 414 ~~e~l~~~l~~l~~~l~~~ 432 (464)
+++++++++++|++++++.
T Consensus 510 ~~e~l~eal~RL~~~~~~~ 528 (534)
T PLN02231 510 QEDKIPAIVSRLTEFHKSF 528 (534)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999987764
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=401.98 Aligned_cols=354 Identities=19% Similarity=0.363 Sum_probs=294.4
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.++++++ ++.+.+++..... .....|.+..|.++||+++|+++++.+| ..+++++|++
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 98 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALD------------EGWTHYTPNAGIPELREAIAEYYKKFYG--VDVDVDNVIV 98 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCcccEEE
Confidence 46899999999885 4556666555311 2245688888999999999999987766 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.+++++||.|++++|+|..+...+... |++++.++++.+++|.+|++.+++.+.+ ++++++
T Consensus 99 t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~ 171 (391)
T PRK08361 99 TAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIA-EAKPIRIPLREENEFQPDPDELLELITK------RTRMIV 171 (391)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhccc------ccEEEE
Confidence 999999999999999999999999999999999888776 9999999998777789999999998865 788999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.+++++|+++|+++++++|+||+|.++.|.+. ...++..+ ..+++++++||||.
T Consensus 172 i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-----------~~~~~i~~~s~SK~ 238 (391)
T PRK08361 172 INYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA--KHYPMIKY-----------APDNTILANSFSKT 238 (391)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC--CCCCHhhc-----------CCCCEEEEecCchh
Confidence 999999999999999999999999999999999999998777543 23343333 23689999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR 351 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 351 (464)
||++|+|+||++++++ +.+.+..... .++++++.|.++..++.+..+ .+++++.++.++++++.+.+.|+++ |+.
T Consensus 239 ~~~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 316 (391)
T PRK08361 239 FAMTGWRLGFVIAPEQ-VIKDMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHIK 316 (391)
T ss_pred cCCcHhhhhhhccCHH-HHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9999999999999654 4444433432 346788999999999988765 4678889999999999999999987 888
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++++|+|+|++++... ....+++..+++++||.|.||..|+..++++|||+++. +++++++++++|++++++
T Consensus 317 ~~~p~g~~~~~~~l~~~~-----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 317 VFEPKGAFYVFANIDETG-----MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERMEKALEE 390 (391)
T ss_pred ecCCCEEEEEEEECCCCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 899999999999997411 01235777777778999999999986667899999995 788999999999998865
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=405.66 Aligned_cols=352 Identities=19% Similarity=0.269 Sum_probs=278.7
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+.|+++++ ++.+.+++.+..... ........|++..|.++||++||+++.+.+| +++++++|+
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~ 103 (409)
T PRK07590 33 EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEM-------GTAETFRGYGPEQGYDFLREKIAENDYQARG--CDISADEIF 103 (409)
T ss_pred CCceEEecCcCCCCCCCHHHHHHHHHHHhcc-------cccCCccCCCCCCCCHHHHHHHHHHHHHhcC--CcCChhhEE
Confidence 457899999999885 455666665532110 0002346798889999999999999877665 558899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcE-----------EEEEecCCCCCcccCHHHHHHHHHH
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVE-----------IVPIHCSSSNGFRITISALENAYQQ 182 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~d~~~l~~~i~~ 182 (464)
+|+|+++++.++. .++.+||+|++++|+|+.|...++.. |.+ ++.++++++++|.++++.
T Consensus 104 it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------- 174 (409)
T PRK07590 104 ISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMA-GRTGEANEDGRYSGIVYLPCTAENNFVPELPE------- 174 (409)
T ss_pred ECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHc-CCcccccccccccceeEeecccccCCcccCcc-------
Confidence 9999999999875 55689999999999999999888877 886 899998766667666432
Q ss_pred HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCC
Q 037587 183 AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (464)
+++++|+++|||||||.++|.+++++|+++|++++++||+||+|.++.+++. ...++..+.. ..
T Consensus 175 -----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~---------~~ 238 (409)
T PRK07590 175 -----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS--LPHSIYEIEG---------AR 238 (409)
T ss_pred -----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC--CCcchhhCCC---------cc
Confidence 2789999999999999999999999999999999999999999998766543 2234433311 23
Q ss_pred CcEEEEcCCCcCCCCCccEEEEEEecCHHHHH-----------HHHH-h-cccCCCChHHHHHHHHHcCCchhhHHHHHH
Q 037587 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERVVS-----------AATK-M-SSFGLVSSQTQYLLSRMLSDKKFTCNYMKE 329 (464)
Q Consensus 263 ~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~-----------~~~~-~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 329 (464)
+++++++||||+||+||+|+||++++++.+.. .... . ..+..++.+.|.++..++.+.. .+++++
T Consensus 239 ~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~ 316 (409)
T PRK07590 239 ECAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQIKE 316 (409)
T ss_pred cceEEEecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHHHHH
Confidence 57999999999999999999999996654431 1111 1 2234578899999999887643 467888
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 037587 330 NRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC 409 (464)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris 409 (464)
.++.++++++.+.+.|+++|+.+.++.+|+|+|++++.... ..+++..+++++||.+.||+.|+..+.+++||+
T Consensus 317 ~~~~~~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~ 390 (409)
T PRK07590 317 LIDYYMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMS------SWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS 390 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceecCCcceEEEEECCCCCC------HHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE
Confidence 89999999999999999999888888899999999985322 235777888788999999999976567899999
Q ss_pred eecCCHHHHHHHHHHHHHHH
Q 037587 410 FANITEETLQVALQRIKVFA 429 (464)
Q Consensus 410 ~~~~~~e~l~~~l~~l~~~l 429 (464)
+. .+++++++++++|++++
T Consensus 391 ~~-~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 391 AF-GSRENVLEAMERIKKAL 409 (409)
T ss_pred cc-CCHHHHHHHHHHHHhhC
Confidence 75 48899999999998753
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=398.62 Aligned_cols=349 Identities=19% Similarity=0.336 Sum_probs=283.6
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i~ 113 (464)
.++|+|+.|+++++ ++.+.+++.+... .....|++..|.++||+++++++.+.+| +.+++ ++|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~i~ 94 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAMR------------DGHNQYAPMAGIAALREALAEKTERLYG--ARYDPASEVT 94 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHH------------hCCCCcCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 36799999998885 4666666654311 1235799999999999999999988776 33444 6899
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++++++.+||.|++++|+|..+...++.. |++++.+++++ ++|.+|++.+++.++. ++++|
T Consensus 95 it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 166 (384)
T PRK12414 95 VIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQ-GATPVAIKLSP-EDFRVNWDEVAAAITP------RTRMI 166 (384)
T ss_pred EECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHc-CCEEEEEecCc-cccccCHHHHHhhcCc------ccEEE
Confidence 9999999999999999999999999999999998888876 99999999864 4588999999988754 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|+++++++|+||+|.++.|++. .+.++..+.. ..+++++++||||
T Consensus 167 ~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~SfSK 235 (384)
T PRK12414 167 IVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA--RHHSMARHRE---------LAERSVIVSSFGK 235 (384)
T ss_pred EEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCC--CccCcccCcC---------ccCcEEEEecccc
Confidence 9999999999999999999999999999999999999999877654 2233333211 2368999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||++|+|+||++++++ +.+.+.+.. ..++++.+.|.++..++.++.+ ..+.++.++++++.+.+.|++.|+.
T Consensus 236 ~~~~pGlRiG~~v~~~~-l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~ 310 (384)
T PRK12414 236 SYHVTGWRVGYCLAPAE-LMDEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRKRDLLARELAGSRFE 310 (384)
T ss_pred cccCccceEEEEecCHH-HHHHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999999999654 445454443 2345788999999999987654 3356778899999999999999999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCC--CCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNE--PGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~--~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
+.+++||||+|++++..... .+.+++..+++++||.|.||+.|+..+ .+++||+++. +++++++++++|.+
T Consensus 311 ~~~~~gg~~~~~~~~~~~~~----~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~~ 383 (384)
T PRK12414 311 LLPSEGSFFMLARFRHFSDE----SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCS 383 (384)
T ss_pred ecCCCcceEEEEcccccCCC----CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 99999999999998753211 123567677788999999999986432 5799999996 89999999999875
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=398.20 Aligned_cols=350 Identities=20% Similarity=0.335 Sum_probs=289.0
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.|+++++ ++.+.+++.+... .....|++..|.+++|+++|+++++.+| +.+++++|++
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~i 97 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALA------------AGHTRYTAARGLPALREAIAGFYAQRYG--VDVDPERILV 97 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCccCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 46799999999875 5666776665421 1234698888999999999999988766 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.+++.+||.|++++|+|+.+...+... |.+++.++++.+++|.+|++.+++.+++ ++++++
T Consensus 98 t~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 170 (387)
T PRK08960 98 TPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLV-EGAAQLVPVGPDSRYQLTPALVERHWNA------DTVGAL 170 (387)
T ss_pred ccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc-CCeEEEEecCcccCCCCCHHHHHHHhCc------cceEEE
Confidence 999999999999999999999999999999998888876 9999999998777889999999988764 678899
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
+++||||||.++|.+++++|+++|+++|+++|+||+|.++.|++. ..++... .+++++++||||.
T Consensus 171 i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~---~~~~~~~------------~~~vi~~~S~SK~ 235 (387)
T PRK08960 171 VASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD---AASVLEV------------DDDAFVLNSFSKY 235 (387)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCChhhc------------cCCEEEEeecccc
Confidence 999999999999999999999999999999999999998777533 2333222 2689999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 352 (464)
||++|+|+||++++++ +.+.+...... ..++.+.|.++..++.+. . .+++++.++.++++++.+.+.|+++|+.+
T Consensus 236 ~g~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 312 (387)
T PRK08960 236 FGMTGWRLGWLVAPPA-AVPELEKLAQNLYISASTPAQHAALACFEPE-T-LAILEARRAEFARRRDFLLPALRELGFGI 312 (387)
T ss_pred cCCcccEEEEEEcCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-c-HHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 9999999999999654 55555554432 346889999999988753 2 56788899999999999999999988765
Q ss_pred -ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 353 -LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 353 -~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
..|++|+|+|++++.... +..+++..+++++||.|.||+.|+.. ..+|+||+++. +.+.+.+++++|+++++
T Consensus 313 ~~~p~g~~f~~~~~~~~~~-----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 313 AVEPQGAFYLYADISAFGG-----DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIARGLR 386 (387)
T ss_pred CcCCCeeEEEEEeccccCC-----CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 467889999999985211 12357778887889999999999753 35699999996 78999999999998775
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=395.31 Aligned_cols=357 Identities=22% Similarity=0.418 Sum_probs=291.1
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC-CCcEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD-PNKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~~~i~ 113 (464)
.++|+|+.+.+++. ++.+.+++..... .....|++..|.++||+++++++++.++ +.++ +++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i~ 95 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAID------------ANQSHYTGMAGLLELRQAAADFVKEKYN--LDYAPENEIL 95 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46899999999875 4556666554311 1235698888999999999999987766 3445 47999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++.+++.+++++||.|++++|+|..+...++.. |.+++.++.++ ++|.+|++.+++.+++. ..++++|
T Consensus 96 it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~~---~~~~~~i 170 (391)
T PRK07309 96 VTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLV-GAEIVEIDTTE-NDFVLTPEMLEKAILEQ---GDKLKAV 170 (391)
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHc-CCEEEEEecCC-cCCcCCHHHHHHHhhcc---CCCeEEE
Confidence 9999999999999999999999999999999998888776 99999999763 46789999999888631 2368999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.++|.+++++|+++|+++++++|+||+|.++.|.+. .+.++.++ ..+++++++||||
T Consensus 171 ~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~-----------~~~~~i~~~S~SK 237 (391)
T PRK07309 171 ILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE--PHVSIAEY-----------LPDQTILINGLSK 237 (391)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC--CCCCHHHh-----------ccCCEEEEecChh
Confidence 9999999999999999999999999999999999999999887554 33454444 2278999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||++|+|+||++++++ +.+.+..... ..+++.++|.++..++++..+ +....++.++++++.+.+.|+++|+.
T Consensus 238 ~~g~~GlRvG~~v~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (391)
T PRK07309 238 SHAMTGWRIGLIFAPAE-FTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD---DALPMKKEYIKRRDYIIEKMTDLGFK 313 (391)
T ss_pred hccCccceeEEEEeCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHhCChh---HHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 99999999999999655 4444443332 235788999999999987643 23556778889999999999999999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++++|+|+|++++..... +..+++.++++++||.|.||..|+..++++|||+++. +++++++++++|++++++
T Consensus 314 ~~~p~gg~~~~~~l~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~~ 388 (391)
T PRK07309 314 IIKPDGAFYIFAKIPAGYNQ----DSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEE 388 (391)
T ss_pred ecCCCeeEEEEEECCCCCCC----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999864321 2335777777788999999999987667899999985 789999999999999976
Q ss_pred hC
Q 037587 432 CN 433 (464)
Q Consensus 432 ~~ 433 (464)
++
T Consensus 389 ~~ 390 (391)
T PRK07309 389 HA 390 (391)
T ss_pred hc
Confidence 54
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=398.73 Aligned_cols=360 Identities=21% Similarity=0.404 Sum_probs=295.0
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.+.+.++ ++.+.+++.+... ....+|+++.|.++||+++++++.+.+| +.+++++|+
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~i~ 97 (402)
T PRK06107 32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIE------------RGETKYTLVNGTPALRKAIIAKLERRNG--LHYADNEIT 97 (402)
T ss_pred cCCEEEcCCCCCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 347899999998875 4556666555321 1235799999999999999999988766 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|..|...+... |.+++.++++.+++|.+|++.+++.+.. ++++|
T Consensus 98 ~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v 170 (402)
T PRK06107 98 VGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLAN-DGTPVIVACPEEQGFKLTPEALEAAITP------RTRWL 170 (402)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHc-CCEEEEecCCcccCCCCCHHHHHhhcCc------CceEE
Confidence 9999999999999999999999999999999998877766 8888888887566788999999988753 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhC-CeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSK-RIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~-~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
+++|||||||.++|.+++++++++|+++ ++++|+||+|.++.|.+. .+.++..+.++ ..+++++++|||
T Consensus 171 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~--~~~~~~~~~~~--------~~~~vi~~~S~S 240 (402)
T PRK06107 171 ILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE--PTPHLLAAAPE--------LRDRVLVTNGVS 240 (402)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC--CCCCHHHhCcC--------ccCCEEEEeccc
Confidence 9999999999999999999999999998 999999999998877654 44555555332 236899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-G 349 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 349 (464)
|.||++|+|+||++++++ +.+.+..... .+.++.+.|.++..++.+. .+++++.++.++++++.+.+.|+++ |
T Consensus 241 K~~~~pGlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~g 316 (402)
T PRK06107 241 KTYAMTGWRIGYAAGPAD-LIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQRRDYALALLNAIPG 316 (402)
T ss_pred hhhcCcccceeeeecCHH-HHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999544 5555555443 3458889999999999753 3568888999999999999999987 8
Q ss_pred CeeecCCccEEEEEecCcccc-----cCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHH
Q 037587 350 IRCLKSNAGLFCWVDMRHLLV-----SNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQR 424 (464)
Q Consensus 350 ~~~~~~~~g~f~~~~l~~~~~-----~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~ 424 (464)
+.+.++++|+|+|++++.... ........+++..+++++||.|+||..|+. ++|+||+++. +++++++++++
T Consensus 317 ~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~-~~e~l~~~l~~ 393 (402)
T PRK06107 317 LSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIAT-SLETLEEACAR 393 (402)
T ss_pred CcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHHH
Confidence 888899999999999853211 101112346778888889999999999964 6799999995 89999999999
Q ss_pred HHHHHHhh
Q 037587 425 IKVFAQSC 432 (464)
Q Consensus 425 l~~~l~~~ 432 (464)
|++++++.
T Consensus 394 l~~~l~~~ 401 (402)
T PRK06107 394 IERAVAAL 401 (402)
T ss_pred HHHHHHhc
Confidence 99998764
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=392.42 Aligned_cols=341 Identities=23% Similarity=0.379 Sum_probs=281.2
Q ss_pred eEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEEEe
Q 037587 38 IIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLVLT 115 (464)
Q Consensus 38 ~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~it 115 (464)
+++|+.+.+.++ ++.+.+++++.. .....|+++.|.++||+++++++++.+| ++++++ +|++|
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~Iiit 66 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAV-------------PEVSQYPSALGTKALREAISGWFERRFG--VKLDPDAQVLPS 66 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHH-------------hccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEEEc
Confidence 578898887776 566777666531 3456799999999999999999988776 557887 99999
Q ss_pred CChHHHHHHHHHHhcCCC---CeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 116 AGSTAANETLMFCLADPG---DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~g---d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+++++..++.+++++| |.|+++.|+|+.|...+... |++++.++++++++|.+|++.+++++.+ ++++
T Consensus 67 ~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~ 139 (350)
T TIGR03537 67 AGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFA-GGEPTAVKLKKEDGFLLRLEKVEKSILE------ETKI 139 (350)
T ss_pred CChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHHhc-CCEEEEcccCcccCCccCHHHHHHhhhh------ccEE
Confidence 999999999999999887 69999999999999999877 9999999997667889999999998875 7899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
+++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ..++..+ ..+++++++|||
T Consensus 140 i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~-----------~~~~~i~~~s~S 205 (350)
T TIGR03537 140 VWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP---PHSALEV-----------GIENVLAFHSLS 205 (350)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC---CCchhhc-----------CcCCEEEEeecc
Confidence 99999999999999999999999999999999999999998755432 2333322 236899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccC--CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFG--LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.+|++|+|+||++++ +.+.+.+......+ ..+.+.|.++..++.+.. ++++.++.++++++.+.+.|.+.|+
T Consensus 206 K~~g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~r~~l~~~~~~~~~~l~~~g~ 280 (350)
T TIGR03537 206 KRSGMTGYRSGFVAGD-EKLISFLRKLRANFGVASPDFVQAAAKAAWSDDN----HVLERRKIFKRKRDLFIEFFNKVGL 280 (350)
T ss_pred cccCCccccceeeecC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcH----HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999984 45555555544333 234467888877776544 4677788999999999999999999
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
++.++++|+|+|++++.... ..+++..|+ ++||.|+||..|+...++++||+++ .+++++++++++|++
T Consensus 281 ~~~~~~g~~~~~~~~~~~~~------~~~l~~~L~-~~gv~v~~g~~f~~~~~~~~Ri~~~-~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 281 EYLYPDATFYLWVKVPSGID------AKDYALRLL-ENGIVVAPGENFGSGEEGYVRVALV-PTLEECEEALRLWER 349 (350)
T ss_pred cccCCCeEEEEEEECCCCCC------HHHHHHHHH-HCCEEEcCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHhc
Confidence 98899999999999985322 235777776 5799999999997655789999997 588999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=396.56 Aligned_cols=358 Identities=20% Similarity=0.345 Sum_probs=288.2
Q ss_pred CceEEeeccccc----c-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 36 SGIIQMGLAENQ----L-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 36 ~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
.++|+|+.+++. + +++.+.+++...... .....|++..|..+||+++|+++++. + ..++++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~aia~~~~~~-~--~~~~~~ 96 (401)
T TIGR01264 31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDS-----------GKYNGYAPTVGALSAREAIASYYHNP-D--GPIEAD 96 (401)
T ss_pred CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhc-----------cCCCCCCCCCCCHHHHHHHHHHHhhc-C--CCCCHH
Confidence 477999998763 3 446666665553110 23456988889999999999999863 3 347889
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|++|+|+++++.+++.+++++||.|++++|+|..+...+... |++++.++++.+++|.+|++.+++.+.+ ++
T Consensus 97 ~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~l~~~~~~------~~ 169 (401)
T TIGR01264 97 DVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESM-GIEVKLYNLLPDKSWEIDLKQLESLIDE------KT 169 (401)
T ss_pred HEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHc-CCEEEEeecCCccCCCCCHHHHHHHhcc------Cc
Confidence 9999999999999999999999999999999999998888877 9999999987666789999999987754 67
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|.+. .+.++..+.+ ..++++++|
T Consensus 170 ~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~----------~~~vi~~~S 237 (401)
T TIGR01264 170 AALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA--TFEPLASLSS----------TVPILSCGG 237 (401)
T ss_pred eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc--ccccHHHcCC----------CCcEEEEcc
Confidence 8999999999999999999999999999999999999999999877654 3445555422 236999999
Q ss_pred CCcCCCCCccEEEEEEecCH-----HHHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037587 271 LSKDFSMPGFRVGMIYSNNE-----RVVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~~-----~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (464)
|||+|+++|+|+||++++++ .+.+.+.... ..+.++++.|.++..++.+. . ++++++.++.++++++.+.+.
T Consensus 238 fSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~r~~l~~~ 315 (401)
T TIGR01264 238 LAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRT-P-QEYFDGTLSVLESNAMLCYGA 315 (401)
T ss_pred CcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998641 2333333333 23457889999999999763 2 567888999999999999999
Q ss_pred HHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHH
Q 037587 345 LKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 345 l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 423 (464)
|+++ |+.+..|++|+|+|++++.... .......+++..+++++||.|+||+.|+ .++++||+++. ++++++++++
T Consensus 316 L~~~~~~~~~~p~~g~f~~~~~~~~~~-~~~~~~~~~~~~l~~~~gI~v~pg~~f~--~~~~iRis~~~-~~~~l~~~l~ 391 (401)
T TIGR01264 316 LAAVPGLRPVMPSGAMYMMVGIEMEHF-PEFKNDVEFTERLVAEQSVFCLPGSCFE--YPGFFRVVLTV-PVVMMEEACS 391 (401)
T ss_pred HHhCCCCcccCCCeeeEEEEEeccccc-CCCCCHHHHHHHHHHhCCEEEeCchhcC--CCCeEEEEEcC-CHHHHHHHHH
Confidence 9988 7777778999999999864200 0011234577888778899999999986 36899999995 7899999999
Q ss_pred HHHHHHHhh
Q 037587 424 RIKVFAQSC 432 (464)
Q Consensus 424 ~l~~~l~~~ 432 (464)
+|+++++++
T Consensus 392 rl~~~~~~~ 400 (401)
T TIGR01264 392 RIQEFCERH 400 (401)
T ss_pred HHHHHHhcc
Confidence 999998753
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=395.17 Aligned_cols=352 Identities=22% Similarity=0.420 Sum_probs=291.1
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.|+++++ ++.+.+++.+... .....|++..|.++||+++|+++++.++ ..+++++|++
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~la~~~~~~~~--~~~~~~~i~~ 89 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALA------------DGETFYTHNLGIPELREALARYVSRLHG--VATPPERIAV 89 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCcCcceEEE
Confidence 46899999999986 5667777665421 1234699989999999999999988766 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCC-CCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS-NGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
|+|+++++..++.+++++||.|++++|+|+.+...+... |++++.++++.+ ++|.+|++.+++.+.+ +++++
T Consensus 90 t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~i 162 (382)
T PRK06108 90 TSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKIL-GARVVCVPLDFGGGGWTLDLDRLLAAITP------RTRAL 162 (382)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHC-CCEEEEeeCCCCCCCccCCHHHHHHhcCc------cceEE
Confidence 999999999999999999999999999999998888877 999999998753 4688999999988754 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccC-CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++.++ +. ...++..+.. ..+++++++|||
T Consensus 163 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~S~S 231 (382)
T PRK06108 163 FINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGG--RAPSFLDIAE---------PDDRIIFVNSFS 231 (382)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCC--CCCCHhhcCC---------CcCCEEEEeech
Confidence 99999999999999999999999999999999999999998775 22 2234333322 236899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-G 349 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 349 (464)
|.||++|+|+||++++++ +.+.+..... ...++.+.|.++..++.+. .+++++.++.++++++.+.+.|++. |
T Consensus 232 K~~g~~G~RiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 307 (382)
T PRK06108 232 KNWAMTGWRLGWLVAPPA-LGQVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRRSRDHLVDALRALPG 307 (382)
T ss_pred hhccCcccceeeeeCCHH-HHHHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999544 4444444332 2346788999999999764 3457788888999999999999887 8
Q ss_pred CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 350 IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 350 ~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+.+.++++|+|+|++++.... ..+++..+++++||.|+||..|+...++++||+++. +++++++++++|++++
T Consensus 308 ~~~~~p~~g~~~~~~l~~~~~------~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 308 VEVAKPDGAMYAFFRIPGVTD------SLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFL 380 (382)
T ss_pred CcccCCCeeEEEEEeCCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 888889999999999975321 235788888888999999999976567899999997 8999999999999987
Q ss_pred H
Q 037587 430 Q 430 (464)
Q Consensus 430 ~ 430 (464)
+
T Consensus 381 ~ 381 (382)
T PRK06108 381 A 381 (382)
T ss_pred h
Confidence 5
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=392.01 Aligned_cols=342 Identities=19% Similarity=0.297 Sum_probs=272.0
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
++|+|+.|+|+++ ++.+.+++.+.. .....|+++.|.++||+++|+++++.+| +++++++|++|
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~G~~~lr~aia~~l~~~~g--~~~~~~~I~it 89 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNA-------------HLLNKYPKSAGEESLREAQRGFFKRRFK--IELKENELIPT 89 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHh-------------hccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEEEe
Confidence 7899999999875 455666665431 3456899999999999999999988776 45789999999
Q ss_pred CChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 116 AGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 116 ~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+++++..++.+++ .+||.|+++.|+|+.|...+... |+++++++++++++|.+|+...+ + .++++|
T Consensus 90 ~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~~~--~-------~~~k~v 159 (374)
T PRK05839 90 FGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIAS-RAKVLLMPLTKENDFTPSLNEKE--L-------QEVDLV 159 (374)
T ss_pred cCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhc-CCEEEEeecccccCCcCCcchhh--h-------ccccEE
Confidence 999999999988764 57899999999999999988876 99999999987778888765432 2 168899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.+.. .+.++....... .....+++++++||||
T Consensus 160 ~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~---~~~s~~~~~~~~----~~~~~~~vi~~~SfSK 232 (374)
T PRK05839 160 ILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT---PPPSLLEASILV----GNESFKNVLVINSISK 232 (374)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC---CCCCHhhhhccc----CccccCcEEEEecccc
Confidence 999999999999999999999999999999999999999864432 223433321100 0013379999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
+||+||+|+||++++ +.+.+.+..... .+.++.+.|.++..++.+.+ ++++.++.++++++.+.+.| ++.
T Consensus 233 ~~~~~GlRiG~ii~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l---~~~ 304 (374)
T PRK05839 233 RSSAPGLRSGFIAGD-ASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDE----HAEFFRNIYAKNLKLAREIL---GIT 304 (374)
T ss_pred ccCCccceeEEEecC-HHHHHHHHHHHhhcCCCCChHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHhc---CCC
Confidence 999999999999995 455555554432 24577888998888877644 46777888888888887765 343
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
.|++|+|+|++++. ..+++.++++++||.|+||..|+.. .++|+||+++. +++++.+++++|++++
T Consensus 305 --~p~gg~fi~~~~~~---------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 305 --IPPATFYVWLPVDN---------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEIIKTYL 372 (374)
T ss_pred --CCCeeEEEEEeCCC---------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 67889999999862 1357788877789999999888753 36899999985 7999999999999987
Q ss_pred H
Q 037587 430 Q 430 (464)
Q Consensus 430 ~ 430 (464)
+
T Consensus 373 ~ 373 (374)
T PRK05839 373 E 373 (374)
T ss_pred h
Confidence 5
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-49 Score=391.87 Aligned_cols=355 Identities=24% Similarity=0.394 Sum_probs=285.2
Q ss_pred CceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
.++|+|+.+.++.+. +.+.+.+.+.. ......|++..|.++||+++++++++.+| +.++++ +|+
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~i~ 91 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADAL------------LDGSNQYPPMMGLPELRQAVAAHYARFQG--LDLDPETEVM 91 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHH------------hcCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcccEE
Confidence 367999998776642 33333333321 02346799999999999999999988766 457888 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|+.+...++.. |++++.+++++ ++|.+|++.+++.+.+ +++++
T Consensus 92 ~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~v 163 (387)
T PRK08912 92 VTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRA-GGVPRLVRLEP-PHWRLPRAALAAAFSP------RTKAV 163 (387)
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCc-ccCcCCHHHHHHHhCc------cceEE
Confidence 9999999999999999999999999999999999988877 99999999864 3578999999988754 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|+++++++|+||+|.++.|++. .+.++..+.. ..+++++++||||
T Consensus 164 ~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~S~SK 232 (387)
T PRK08912 164 LLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR--RHIPLMTLPG---------MRERTVKIGSAGK 232 (387)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC--CCcChhhCCC---------ccCceEEEeechh
Confidence 9999999999999999999999999999999999999998877653 3344433311 2368999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||++|+|+||++++++ +.+.+...... +++++..|.++..++... .+++++.++.++++++.+.+.|+..|+.
T Consensus 233 ~~g~~GlRiG~~~~~~~-~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 308 (387)
T PRK08912 233 IFSLTGWKVGFVCAAPP-LLRVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARSRDRLAAGLRRIGFP 308 (387)
T ss_pred hccCcCceeEEEecCHH-HHHHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999554 44444444332 346667888887777532 3457788899999999999999999999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+.++++|+|+|++++..... .+..+++..+++++||.|.||..|+.. ..+|+||+++. +++.+++++++|++++
T Consensus 309 ~~~~~g~~~l~~~l~~~~~~---~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 309 VLPSQGTYFLTVDLAPLGLA---EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAAR 384 (387)
T ss_pred ccCCCcceEEEecccccCCC---CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHH
Confidence 99999999999999852110 123457888887889999999998642 35799999996 7899999999999987
Q ss_pred Hh
Q 037587 430 QS 431 (464)
Q Consensus 430 ~~ 431 (464)
++
T Consensus 385 ~~ 386 (387)
T PRK08912 385 RR 386 (387)
T ss_pred hc
Confidence 64
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=400.28 Aligned_cols=340 Identities=17% Similarity=0.233 Sum_probs=276.6
Q ss_pred CceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
..+++|+.+.+..++ |.+.+++.... .....|++..|.++||+++++++++..+ .+++|++
T Consensus 85 ~~~i~L~~g~p~~~~~p~~~~~~~~~~-------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~-----~~~~Iii 146 (431)
T PRK15481 85 TPLHDLAGGNPDPQRLPDLSRYFARLS-------------RTPRLYGDAPVSPELHAWAARWLRDDCP-----VAFEIDL 146 (431)
T ss_pred chhhhhhcCCCChhHhHHHHHHHHHhh-------------hhhhhcCCcCCCHHHHHHHHHHHhhccC-----CcCeEEE
Confidence 356899988655443 45555544421 2345799999999999999999985321 3569999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..+++++++|||.|++++|+|+.|...++.. |++++.++++++ .+|++.+++++++ ++++++
T Consensus 147 t~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~---g~~~~~l~~~~~~------~~k~i~ 216 (431)
T PRK15481 147 TSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYA-GFSASPVSVDAE---GMQPEKLERALAQ------GARAVI 216 (431)
T ss_pred ecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCeEEeeccCCC---CCCHHHHHHHHhc------CCCEEE
Confidence 999999999999999999999999999999999999877 999999998643 3789999998864 678888
Q ss_pred Ee-CCCCCCCCCCCHHHHHHHHHHHhhC-CeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 195 IT-NPSNPLGTAMTHQELNHLINFSKSK-RIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 195 l~-~P~NPtG~~~s~~~l~~i~~~~~~~-~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
++ |||||||.++|.+++++|+++|+++ +++||+||+|.++.+.+. .+.... ..+++++++|||
T Consensus 217 ~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~----~~~~~~-----------~~~~vi~~~SfS 281 (431)
T PRK15481 217 LTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY----HSVIPQ-----------TTQRWALIRSVS 281 (431)
T ss_pred ECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC----CCCCcC-----------CCCCEEEEeeec
Confidence 86 9999999999999999999999999 999999999998755322 222111 236899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|+|| ||+|+||++++++ +.+.+...... .+++.++|.++..+|+++++ .+++++.++.++++++.+.+.|++.|+
T Consensus 282 K~~~-~GlRiG~~i~~~~-~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~~~ 358 (431)
T PRK15481 282 KALG-PDLRLAFVASDSA-TSARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQYGI 358 (431)
T ss_pred cccC-CCceeEEEeCCHH-HHHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999 9999999999554 44444433322 34788999999999999877 788999999999999999999999998
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
.+..|++|+|+|++++.. ..+++..++ ++||.|.||..|+.. ..+++||+++..+++++++++++|++++
T Consensus 359 ~~~~p~gg~f~~~~l~~~--------~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~ 429 (431)
T PRK15481 359 AIPSPGDGLNLWLPLDTD--------SQATALTLA-KSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQAL 429 (431)
T ss_pred ccccCCCeEEEEEECCCC--------HHHHHHHHH-HCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHh
Confidence 887789999999999741 224666665 689999999999643 2468999999878999999999999886
Q ss_pred H
Q 037587 430 Q 430 (464)
Q Consensus 430 ~ 430 (464)
.
T Consensus 430 ~ 430 (431)
T PRK15481 430 N 430 (431)
T ss_pred c
Confidence 4
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=390.52 Aligned_cols=352 Identities=25% Similarity=0.467 Sum_probs=288.7
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
+++|+|+.+.+.++ ++.+.+++.+... .....|++..|.++||+++|+++++.+| +.++++ +|+
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~~I~ 93 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAIT------------ENYTSYTHNAGLLELRKAACNFVKDKYD--LHYSPESEII 93 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46799999987654 3566666665321 2245798888999999999999987766 557888 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++.+++.+++++||.|++++|+|+.+...+... |++++.++.++ ++|.+|.+.+++.+.+ +++++
T Consensus 94 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~i 165 (387)
T PRK07683 94 VTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLC-GAKPVFIDTRS-TGFRLTAEALENAITE------KTRCV 165 (387)
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHc-CCEEEEeecCc-ccCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999998888876 99999999874 5688899999887754 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|+++|+++|+||+|.++.|.+. ..++.++.. ..+++++++||||
T Consensus 166 ~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~---------~~~~vi~~~s~SK 233 (387)
T PRK07683 166 VLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP---HTSIAHFPE---------MREKTIVINGLSK 233 (387)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC---cCChhhccC---------CcCCeEEEeeccc
Confidence 9999999999999999999999999999999999999999776543 234443311 3478999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||+||+|+||++++++ +.+.+..... ...++++.|.++..++.++. .++++.++.++++++.+.+.|.+.|+.
T Consensus 234 ~~~~pGlRiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (387)
T PRK07683 234 SHSMTGWRIGFLFAPSY-LAKHILKVHQYNVTCASSISQYAALEALTAGK---DDAKMMRHQYKKRRDYVYNRLISMGLD 309 (387)
T ss_pred cccCccceeEEEEcCHH-HHHHHHHHHHhccCCCChHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999654 4444443332 23467789999999997653 357778888999999999999998998
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++++|+|+|+.++... ..+.+++..+++++||.|+||+.|+...++++||+++. +++++.+++++|.+++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 310 VEKPTGAFYLFPSIGHFT-----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred ccCCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 889999999999987421 11234677777889999999999986567899999996 899999999999998864
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=389.09 Aligned_cols=354 Identities=20% Similarity=0.329 Sum_probs=287.3
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC-CCcEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD-PNKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~~~i~ 113 (464)
.++++|+.|.++++ ++.+.+++.+.... .....|++..|.+++|+++++++.+..| +.++ +++|+
T Consensus 27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~~~~~~l~~~~g--~~~~~~~~i~ 93 (389)
T PRK05957 27 PGTISLGQGVVSYPPPPEAIEALNNFLAN-----------PENHKYQAVQGIPPLLEAITQKLQQDNG--IELNNEQAIV 93 (389)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 36799999999874 56677776654211 2235799889999999999999988766 4455 67999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++.+ ++|.+|++++++.+++ ++++|
T Consensus 94 ~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~------~~klv 164 (389)
T PRK05957 94 VTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMA-GCQPILVPTD--DNYQLQPEAIEQAITP------KTRAI 164 (389)
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc-CCEEEEeecC--CCCCcCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999888777766 9999999875 4678999999998864 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|+++|+++|+||+|.++.|++. ...+...+.. ...++++++||||
T Consensus 165 ~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~S~SK 233 (389)
T PRK05957 165 VTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV--KHFSPGSIPG---------SGNHTISLYSLSK 233 (389)
T ss_pred EEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC--CccChhhCCC---------ccCcEEEEecchh
Confidence 9999999999999999999999999999999999999999877643 2233333322 3468999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-C-
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-G- 349 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g- 349 (464)
.||++|+|+||+++++ .+.+.+...... ..++.+.|.++..++.++. .++++.++.++++++.+.+.|++. +
T Consensus 234 ~~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~r~~l~~~L~~~~~~ 309 (389)
T PRK05957 234 AYGFASWRIGYMVIPI-HLLEAIKKIQDTILICPPVVSQYAALGALQVGK---SYCQQHLPEIAQVRQILLKSLGQLQDR 309 (389)
T ss_pred hccCccceeEEEecCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999955 455555544432 2456789999999998742 235666667889999999999887 5
Q ss_pred CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 350 IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 350 ~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+.+.++++|+|+|++++...+ +.+++..+++++||.|+||+.|+....+|+||+++..+++++++++++|.+++
T Consensus 310 ~~~~~~~gg~~~~~~~~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 310 CTLHPANGAFYCFLKVNTDLN------DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGL 383 (389)
T ss_pred ccccCCCeeEEEEEeCCCCCC------hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 377788999999999975322 34688888877899999999997655679999998778999999999999988
Q ss_pred Hhh
Q 037587 430 QSC 432 (464)
Q Consensus 430 ~~~ 432 (464)
++.
T Consensus 384 ~~~ 386 (389)
T PRK05957 384 KTI 386 (389)
T ss_pred Hhh
Confidence 764
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=389.97 Aligned_cols=354 Identities=22% Similarity=0.408 Sum_probs=286.3
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+.++++++ ++.+.+++.+... .....|++..|.++||+++|+++++.++ +.+++++|+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~ 94 (388)
T PRK07337 29 GRDIIHMGIGEPDFTAPEPVVEAAARALR------------RGVTQYTSALGLAPLREAIAAWYARRFG--LDVAPERIV 94 (388)
T ss_pred CCCEEEeCCcCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHhEE
Confidence 457899999998874 4556666555311 2345799888999999999999988766 457899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++.+++.+++++||+|++++|+|+.+...+... |++++.++++++++|.+|++++++.+.+ ++++|
T Consensus 95 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v 167 (388)
T PRK07337 95 VTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAA-EGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGV 167 (388)
T ss_pred EecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEeecCCccCCcCCHHHHHhhcCc------cceEE
Confidence 9999999999999999999999999999999998887766 9999999998667789999999988754 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|+++++++|+||+|.++.|.+. +.+...+ .+++++++||||
T Consensus 168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~------------~~~vi~~~S~SK 232 (388)
T PRK07337 168 LLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA---PVSALSL------------GDDVITINSFSK 232 (388)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC---CcChhhc------------cCCEEEEEechh
Confidence 9999999999999999999999999999999999999998766432 1232222 267899999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||++|+|+||++++++ +.+.+..... ..+++.+.|.++..++.+..+ +++++.++.++++++.+.+.|+++|+.
T Consensus 233 ~~~~~G~RiG~~~~~~~-l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~L~~~~~~ 309 (388)
T PRK07337 233 YFNMTGWRLGWLVVPEA-LVGTFEKLAQNLFICASALAQHAALACFEPDTL--AIYERRRAEFKRRRDFIVPALESLGFK 309 (388)
T ss_pred hcCCchhheeeeecCHH-HHHHHHHHHHHhccCCChHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999654 4444444432 235788999999999876542 335778889999999999999998876
Q ss_pred e-ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 352 C-LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 352 ~-~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+ ..|++|+|+|++++..... ...++.+++..+++++||.|.||..|+.. ..+|+||+++. +++.+++++++|.+++
T Consensus 310 ~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 310 VPVMPDGAFYVYADCRGVAHP-AAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKLF 387 (388)
T ss_pred cccCCCeeEEEEEecccccCC-CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHh
Confidence 5 4678999999999753211 11123457778888899999999999753 36799999996 7899999999998865
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=391.81 Aligned_cols=350 Identities=21% Similarity=0.328 Sum_probs=286.9
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
.++|+|+.|.+.++ ++.+.+++.+... .....|++..|.+++|+++++++++.++ ..++++ +|+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~~a~~l~~~~~--~~~~~~~~i~ 95 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMA------------AGHNQYPPMTGVAALREAIAAKTARLYG--RQYDADSEIT 95 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46799999988775 4556666655321 1235799889999999999999998766 334554 899
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|++++|+|+.+...++.. |.+++.++++. .+|.+|++++++.+.+ ++++|
T Consensus 96 ~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~v 167 (386)
T PRK09082 96 VTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELA-GGRAVRVALQP-PDFRVDWQRFAAAISP------RTRLI 167 (386)
T ss_pred EeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCc-ccccCCHHHHHHhcCc------cceEE
Confidence 9999999999999999999999999999999999888876 99999999874 3588999999988764 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++. .+.++.++.. ..+++++++||||
T Consensus 168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~--~~~s~~~~~~---------~~~~~i~~~S~SK 236 (386)
T PRK09082 168 ILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA--GHASVLRHPE---------LRERAFVVSSFGK 236 (386)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC--CCCChhhCcC---------ccCcEEEEeechh
Confidence 9999999999999999999999999999999999999999888654 3345444421 2478999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||++|+|+||+++++ .+.+.+.+.. ..++++.+.|.++..++... .+++++.++.++++++.+.+.|++.|+.
T Consensus 237 ~~~~~G~RiG~iv~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 312 (386)
T PRK09082 237 TYHVTGWKVGYCVAPA-ALSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAKRDRFRAALANSRFK 312 (386)
T ss_pred hccchhhhhhhhhCCH-HHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999964 4555554443 23457889999999998732 3457788899999999999999999999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC--NEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
+.++++|+|+|+++++... .+..+++..+++++||.|.||+.|+. ...+++||+++. +++.+++++++|++
T Consensus 313 ~~~~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~ 385 (386)
T PRK09082 313 LLPCEGTYFQLVDYSAISD----LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ 385 (386)
T ss_pred ccCCCeeEEEEEeccccCC----CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 9999999999999975211 12335778888889999999998863 245799999996 88999999999875
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=390.27 Aligned_cols=361 Identities=19% Similarity=0.325 Sum_probs=280.6
Q ss_pred CCceEEeecccc-c--c-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 35 PSGIIQMGLAEN-Q--L-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 35 ~~~~i~l~~~~n-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
+.++|+|+.+.. + + +++.+.+.+.+. ......|+++.|.++||+++|+++++... ..++++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~-------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~ 96 (404)
T PRK09265 32 GHKILKLNIGNPAPFGFEAPDEILRDVIRN-------------LPTAQGYSDSKGLFSARKAIMQYYQQKGI--PDVDVD 96 (404)
T ss_pred CCCeEEecCCCCCcCCCCCCHHHHHHHHHH-------------hhcCCCCCCCCCcHHHHHHHHHHHhccCC--CCCCcc
Confidence 347899999633 2 2 234344433332 12346799999999999999999975322 247899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|++|+|+++++..++.+++++||.|++++|+|+.+...+... |.+++.++++.+++|.+|++.+++.+.. ++
T Consensus 97 ~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~ 169 (404)
T PRK09265 97 DIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLS-GGKPVHYLCDEEAGWFPDLDDIRSKITP------RT 169 (404)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHc-CCEEEEEecccccCCCCCHHHHHHhccc------cc
Confidence 9999999999999999999999999999999999999888776 9999999887666788999999988754 78
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
++|+++|||||||.++|.+++++|+++|+++|++||+||+|.++.|++. .+.++..+.+ ..++++++|
T Consensus 170 ~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~----------~~~vi~~~S 237 (404)
T PRK09265 170 KAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGA--VHISIASLAP----------DLLCVTFNG 237 (404)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCC--CcCCHHHcCC----------CceEEEEec
Confidence 9999999999999999999999999999999999999999999877654 3345544422 247899999
Q ss_pred CCcCCCCCccEEEEEEec-CHH----HHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037587 271 LSKDFSMPGFRVGMIYSN-NER----VVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~-~~~----~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (464)
|||+||+||+|+||++++ +.. +.+.+.... ....++.++|.++..+|.+.+...++++. ++.++++++.+.+.
T Consensus 238 ~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~ 316 (404)
T PRK09265 238 LSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILP-GGRLYEQRDRAWEL 316 (404)
T ss_pred chhhccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999963 332 222222222 22457889999999999765442333333 34567778999999
Q ss_pred HHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHH
Q 037587 345 LKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 345 l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 423 (464)
|+++ |+.+.+|++|+|+|++++..... ...+.+++.+++.++||.|.||+.|+...++|+||+++ .++++++++++
T Consensus 317 L~~~~~~~~~~p~~g~~l~~~~~~~~~~--~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~-~~~e~l~~~l~ 393 (404)
T PRK09265 317 LNAIPGVSCVKPKGALYAFPKLDPKVYP--IHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL-PRVDDLEEAIG 393 (404)
T ss_pred HhcCCCCcccCCCcceEEEEEecccccC--CCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC-CCHHHHHHHHH
Confidence 9887 88888899999999999753211 01122455667788999999999997656789999997 58999999999
Q ss_pred HHHHHHHhhC
Q 037587 424 RIKVFAQSCN 433 (464)
Q Consensus 424 ~l~~~l~~~~ 433 (464)
+|++++++++
T Consensus 394 rl~~~l~~~~ 403 (404)
T PRK09265 394 RIGRFLSGYR 403 (404)
T ss_pred HHHHHHHHhc
Confidence 9999987653
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=374.26 Aligned_cols=355 Identities=20% Similarity=0.351 Sum_probs=291.1
Q ss_pred eeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChH
Q 037587 41 MGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGST 119 (464)
Q Consensus 41 l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~ 119 (464)
|+++....+ |+.+.+++.+.... ...++|.+..|.++|+++|++.+...+|.. ....++|++|+|+.
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~-----------~~~~qYt~~~G~p~L~~aL~k~~se~~~~~-~~~~~eVlVT~GA~ 103 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKE-----------PSTNQYTRGYGLPQLRKALAKAYSEFYGGL-LDPDDEVLVTAGAN 103 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhcc-----------chhccccccCCchHHHHHHHHHHHHHhccc-cCCcccEEEecCch
Confidence 888877776 56677777664221 236789988999999999999999866632 23556899999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC------CCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 120 AANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS------SSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 120 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~------~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
++|..++++++++||+|++.+|.|..|....... |..++.+++. ....|.+|.+.++.++.+ ++|+|
T Consensus 104 ~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~ma-G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~------kTk~I 176 (420)
T KOG0257|consen 104 EAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMA-GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE------KTKAI 176 (420)
T ss_pred HHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhc-CCcceeeccccccccccCccccCChHHHHhhccC------CccEE
Confidence 9999999999999999999999999999999877 9999999987 456799999999999876 99999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++|+||||||.++|+++|++|+++|++||+++|.||+|..+.|++. .+.++..+ + +.+++++.++||||
T Consensus 177 i~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~--~h~r~asl-P--------gm~ertitvgS~gK 245 (420)
T KOG0257|consen 177 ILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGN--KHIRIASL-P--------GMYERTITVGSFGK 245 (420)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCC--cceeeecC-C--------chhheEEEeccccc
Confidence 9999999999999999999999999999999999999998888876 56777767 4 36799999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhh-----HHHHHHHHHHHHHHHHHHHHHHH
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFT-----CNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
+||+.|||+||+++ ++.+......... ...++++.|.|.+.++....-+ ..+++++.+.++++|+.|.+.|.
T Consensus 246 tf~~TGWrlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~ 324 (420)
T KOG0257|consen 246 TFGVTGWRLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALE 324 (420)
T ss_pred eeeeeeeeeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 5555554444322 2357788888887776654311 14566789999999999999999
Q ss_pred hCCCeeecCCccEEEEEecCcccccC------ChhHHHHHHHHHHHhcCeEEeCCCCCCCCC-----CCeEEEEeecCCH
Q 037587 347 VAGIRCLKSNAGLFCWVDMRHLLVSN------TFEAEKELWKKIIFEVGLNISPGSSCHCNE-----PGWFRICFANITE 415 (464)
Q Consensus 347 ~~g~~~~~~~~g~f~~~~l~~~~~~~------~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~-----~~~~Ris~~~~~~ 415 (464)
++|+++..|+|++|+|++++.....+ ....+..++..++++.|+.+.|++.|+... .+++|+++.. ++
T Consensus 325 ~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k-~~ 403 (420)
T KOG0257|consen 325 ELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCK-AD 403 (420)
T ss_pred hcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHh-hH
Confidence 99999999999999999998211110 001234578899999999999999999643 3478999885 88
Q ss_pred HHHHHHHHHHHH
Q 037587 416 ETLQVALQRIKV 427 (464)
Q Consensus 416 e~l~~~l~~l~~ 427 (464)
+.++.++++|++
T Consensus 404 ~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 404 ETLRKAIERLKK 415 (420)
T ss_pred HHHHHHHHHHhh
Confidence 999999999883
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=386.58 Aligned_cols=355 Identities=24% Similarity=0.441 Sum_probs=288.4
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.+.++++ ++.+.+++... ......|++..|.+++|+++++++++ ++ +++++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~-------------~~~~~~Y~~~~g~~~lr~~ia~~~~~-~~--~~~~~~~i~~ 93 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNY-------------DEEVLAYSHSQGIPELREAFAKYYKK-WG--IDVEPDEILI 93 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHH-------------hcCCcCcCCCCCCHHHHHHHHHHHHH-hC--CCCCcceEEE
Confidence 46899999998764 45566665542 12346799999999999999999984 44 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCccc-CHHHHHHHHHHHhhcCCceEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRI-TISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~-d~~~l~~~i~~~~~~~~~~~~v 193 (464)
|+|+++++..++.+++++||+|++++|+|+.+...++.. |++++.++++.+++|.. +++.+++.+.+ ++++|
T Consensus 94 t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~g~~~~~~~~l~~~~~~------~~~~v 166 (397)
T PRK07568 94 TNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSA-GVKIVPVTTKIEEGFHLPSKEEIEKLITP------KTKAI 166 (397)
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHc-CCEEEEeecCcccCCCCCCHHHHHHhcCc------cceEE
Confidence 999999999999999999999999999999988877766 99999999875556654 57888887754 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|+++++++|+||+|.++.|.+. .+.++..+.. ..+++++++||||
T Consensus 167 ~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~s~~~~~~---------~~~~~i~~~S~SK 235 (397)
T PRK07568 167 LISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL--KYTSALSLEG---------LEDRVIIIDSVSK 235 (397)
T ss_pred EEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC--CccChhhcCC---------CcCCEEEEecchh
Confidence 9999999999999999999999999999999999999999877654 3445544421 2478999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 351 (464)
.||++|+|+||++++++.+.+.+.... ..++++.+.|.++..++++. +.++++.++.++++++.+.+.|+++ |+.
T Consensus 236 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 312 (397)
T PRK07568 236 RYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRRDILYEELNKIPGVV 312 (397)
T ss_pred hccCCCcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 999999999999986655655443332 23467889999999999764 4568888999999999999999887 788
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHh-----cCeEEeCCCCCCCC---CCCeEEEEeecCCHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFE-----VGLNISPGSSCHCN---EPGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~-----~gI~v~pg~~f~~~---~~~~~Ris~~~~~~e~l~~~l~ 423 (464)
+.+|+||+|+|++++.. ...+++..++++ +||.|.||..|+.. .++++||+++. ++++++++++
T Consensus 313 ~~~p~g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~~~~ 384 (397)
T PRK07568 313 CEKPKGAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKRAME 384 (397)
T ss_pred ecCCCcceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHHHHH
Confidence 88899999999999742 123567777654 69999999988531 34799999984 7899999999
Q ss_pred HHHHHHHhhCcc
Q 037587 424 RIKVFAQSCNPQ 435 (464)
Q Consensus 424 ~l~~~l~~~~~~ 435 (464)
+|+++++++..|
T Consensus 385 ~l~~~l~~~~~~ 396 (397)
T PRK07568 385 ILKEALEKYNKR 396 (397)
T ss_pred HHHHHHHHhhcc
Confidence 999999876644
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-48 Score=386.72 Aligned_cols=360 Identities=23% Similarity=0.376 Sum_probs=289.2
Q ss_pred CCceEEeeccccc----c-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 35 PSGIIQMGLAENQ----L-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 35 ~~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
..++|+|+.+.+. + +++.+.+++.+.... .....|++..|..++|++++++++...+ ..+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~ 96 (403)
T TIGR01265 30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRS-----------GKFNGYAPSVGALAAREAVAEYLSSDLP--GKLTA 96 (403)
T ss_pred CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCCH
Confidence 3578999999763 2 345566665553211 2235798888999999999999997544 45678
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
++|++|+|+++++.+++.+++++||+|+++.|+|..+...+... |++++.++++++++|.+|++.+++.+.+ +
T Consensus 97 ~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~ 169 (403)
T TIGR01265 97 DDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFS-GLEVRLYDLLPEKDWEIDLDGLEALADE------K 169 (403)
T ss_pred HHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEecCCcccCCccCHHHHHHHhCc------C
Confidence 99999999999999999999999999999999999888877766 9999999887666788999999988754 6
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
++++++++||||||.++|.+++++|+++|+++|+++|+||+|.++.|++. .+.++.++.+ ..++++++
T Consensus 170 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~----------~~~vi~~~ 237 (403)
T TIGR01265 170 TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDA--PFIPMASFAS----------IVPVLSLG 237 (403)
T ss_pred ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC--Cccchhhhcc----------CCcEEEEe
Confidence 88999999999999999999999999999999999999999999877654 3445555522 25799999
Q ss_pred CCCcCCCCCccEEEEEEecC--HH----HHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNN--ER----VVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLV 342 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~--~~----~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (464)
||||.|++||+|+||+++++ +. +.+.+.... ....++.++|.++..++.+.. ..++++.++.++++++.+.
T Consensus 238 S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~ 315 (403)
T TIGR01265 238 GISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCY 315 (403)
T ss_pred ecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999843 22 223333333 234578899999999997632 5678888999999999999
Q ss_pred HHHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHH
Q 037587 343 SGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVA 421 (464)
Q Consensus 343 ~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 421 (464)
+.|+.+ |+.+..|++|+|+|++++..... ...+..+++..+++++||.|.||..|+ .++|+||+++. +++.++++
T Consensus 316 ~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~pg~~f~--~~~~iRis~~~-~~~~l~~~ 391 (403)
T TIGR01265 316 EELKDIPGLVCPKPEGAMYLMVKLELELFP-EIKDDVDFCEKLVREESVICLPGSAFG--LPNWVRITITV-PESMLEEA 391 (403)
T ss_pred HHHhcCCCceecCCCceeEEEEeccccccC-CCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEecC-CHHHHHHH
Confidence 999987 78877788999999999753211 111234677888888999999999996 37899999995 78999999
Q ss_pred HHHHHHHHHhh
Q 037587 422 LQRIKVFAQSC 432 (464)
Q Consensus 422 l~~l~~~l~~~ 432 (464)
+++|+++++++
T Consensus 392 l~~l~~~~~~~ 402 (403)
T TIGR01265 392 CSRIKEFCERH 402 (403)
T ss_pred HHHHHHHHHhc
Confidence 99999998654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=384.74 Aligned_cols=358 Identities=21% Similarity=0.317 Sum_probs=284.4
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i 112 (464)
+.++|+|+.+.+... ++.+.+.+.+... ......|+++.|.++||+++++++++.+| +.++++ +|
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~i 94 (395)
T PRK08175 28 GEDIIDFSMGNPDGPTPPHIVEKLCEVAQ-----------RPDTHGYSTSRGIPRLRRAISRWYQDRYD--VDIDPESEA 94 (395)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHh-----------CCCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcE
Confidence 357899998755443 3333333333211 02346799999999999999999998766 456776 89
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.++++|||+|++++|+|+.+...+... |++++.++++++++| ++.+++.++. ..+++++
T Consensus 95 ~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~---~~~l~~~l~~---~~~~~~~ 167 (395)
T PRK08175 95 IVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIA-GAQVRSVPLVEGVDF---FNELERAIRE---SYPKPKM 167 (395)
T ss_pred EEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCeEEEEecccCCCc---HHHHHHHHhh---ccCCceE
Confidence 99999999999999999999999999999999988877766 999999998765443 6777777653 1236889
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.|++. ...++..+.. ..+++++++|||
T Consensus 168 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~--~~~~~~~~~~---------~~~~~i~~~S~S 236 (395)
T PRK08175 168 MILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGW--KAPSIMQVPG---------AKDVAVEFFTLS 236 (395)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCC--CCcchhcCCC---------cccCEEEEeecc
Confidence 99999999999999999999999999999999999999998877544 3344433311 236789999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.||+||+|+||++++ +.+.+.+.+... .++++++.|.++..++.+. .++++.++..++++++.+.+.|++.|+
T Consensus 237 K~~g~pGlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~ 312 (395)
T PRK08175 237 KSYNMAGWRIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKRRRDVLVKGLHEAGW 312 (395)
T ss_pred ccccCcchhheeeeCC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999985 455555555443 2346678898888888653 456888899999999999999999998
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.+.++++|+|+|++++...... +..+++.++++++||.|.||..|+..+++++||+++ .+++.+.+++++|+++++
T Consensus 313 ~~~~p~~g~~i~i~l~~~~~~~---~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~-~~~~~~~~al~~l~~~l~ 388 (395)
T PRK08175 313 MVEMPKASMYVWAKIPEPYAAM---GSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI-ENRDRIRQAIRGIKAMFR 388 (395)
T ss_pred cccCCCEEEEEEEECCcccCCC---CHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC-CCHHHHHHHHHHHHHHHH
Confidence 8888889999999998643211 234577788878899999999997666779999998 488999999999999986
Q ss_pred h
Q 037587 431 S 431 (464)
Q Consensus 431 ~ 431 (464)
+
T Consensus 389 ~ 389 (395)
T PRK08175 389 A 389 (395)
T ss_pred h
Confidence 4
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-48 Score=386.51 Aligned_cols=355 Identities=21% Similarity=0.375 Sum_probs=284.6
Q ss_pred CCceEEeecccc---cc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 35 PSGIIQMGLAEN---QL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 35 ~~~~i~l~~~~n---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
+.++|+|+.+.+ .+ +++.+.+++.+... .....|++..|.++||+++++++++.+| +.++++
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~ 94 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIK------------EGHNYYGPSEGLPELREAIVKREKRKNG--VDITPD 94 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCChh
Confidence 457899999987 34 45666666654311 1235798888999999999999988765 557899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEE-ecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPI-HCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v-~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
+|++|+|+++++..++.+++++||.|++++|+|+.+...+... |.+++.+ +.+ +++|.+|++.+++.+.+ +
T Consensus 95 ~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~v~~~~~~-~~~~~~d~~~l~~~~~~------~ 166 (398)
T PRK08363 95 DVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFY-GGVPVEYRTIE-EEGWQPDIDDIRKKITE------K 166 (398)
T ss_pred hEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCEEEEecccc-ccCCcCCHHHHHhhCCc------c
Confidence 9999999999999999999999999999999999998888766 8888888 443 35688999999887754 7
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++|+++|||||||.++|.+++++|+++|+++|+++|+||+|.++.|.+. +.++..+. ...++++++
T Consensus 167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~---~~~~~~~~----------~~~~vi~~~ 233 (398)
T PRK08363 167 TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK---HVSPGSLT----------KDVPVIVMN 233 (398)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc---ccCHHHcC----------cCCcEEEEe
Confidence 89999999999999999999999999999999999999999998777543 23443332 225799999
Q ss_pred CCCcCCCCCccEEEEEEe--cCHHHHHHHHHhc----ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYS--NNERVVSAATKMS----SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~--~~~~~~~~~~~~~----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
||||.|+++|+|+||+++ +++.+........ ..+.++.+.|.++..++.+. .+++++.++.++++++.+.+
T Consensus 234 SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~~~~~~~l~~ 310 (398)
T PRK08363 234 GLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYK 310 (398)
T ss_pred cchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 4333322222211 12457889999999998752 45688888999999999999
Q ss_pred HHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHH
Q 037587 344 GLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVAL 422 (464)
Q Consensus 344 ~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 422 (464)
.|+++ ++.+.++++|+|+|++++.... ....+++..++.++||.|+||+.|+..+++|+||+++ .+++++++++
T Consensus 311 ~L~~~~~~~~~~p~g~~~~~~~l~~~~~----~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-~~~~~l~~~l 385 (398)
T PRK08363 311 RLNEIPGISTTKPQGAFYIFPRIEEGPW----KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL-PPVEILEEAM 385 (398)
T ss_pred HHhcCCCCEecCCCeEEEEEEEeccCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHH
Confidence 99887 7888889999999999875211 1123466777788999999999997655789999998 4789999999
Q ss_pred HHHHHHHHhh
Q 037587 423 QRIKVFAQSC 432 (464)
Q Consensus 423 ~~l~~~l~~~ 432 (464)
++|++++.+.
T Consensus 386 ~~l~~~~~~~ 395 (398)
T PRK08363 386 DRFEEFMRER 395 (398)
T ss_pred HHHHHHHHHh
Confidence 9999988763
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=386.78 Aligned_cols=329 Identities=18% Similarity=0.245 Sum_probs=267.8
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.|+|+++ ++.+.+++.+.. .....|+ ..|.++||++||++++ +++++|++
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~-------------~~~~~Yp-~~g~~~Lr~aia~~~~--------~~~~~I~v 86 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSW-------------LDHALYP-DGGATTLRQTIANKLH--------VKMEQVLC 86 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHH-------------HhcCcCC-CCCHHHHHHHHHHHhC--------CCcceEEE
Confidence 47899999999995 466666665531 2234576 4588999999999985 78999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++.+++.+++++||.|++++|+|+.|...+... |++++.++++ ++.+|++.+++.+++ ++++++
T Consensus 87 t~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~v~~v~~~---~~~~d~~~l~~~~~~------~~~~v~ 156 (366)
T PRK01533 87 GSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIE-GCEVKEVALN---NGVYDLDEISSVVDN------DTKIVW 156 (366)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHc-CCEEEEeecC---CCCcCHHHHHHHhCc------CCcEEE
Confidence 999999999999999999999999999999999988877 9999999985 346899999988754 788999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.+++.+++++|+++|++++ ++|+||+|.++.+.+. ..+...... ..+++++++||||+
T Consensus 157 i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~---~~~~~~~~~---------~~~~vi~~~SfSK~ 223 (366)
T PRK01533 157 ICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD---FPETLPLLE---------KHKNILVLRTFSKA 223 (366)
T ss_pred EeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc---CcchhHHhc---------cCCCEEEEeCchHH
Confidence 9999999999999999999999998876 5677999998655422 123233332 33789999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK 354 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 354 (464)
||++|+|+||++++ +.+.+.+.+....+.++.++|.++..+|++.++ .++.++.++++++++.+.++.+|+++.+
T Consensus 224 ~~l~GlRiG~~i~~-~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~~~~~~~~r~~~~~~l~~~g~~~~~ 298 (366)
T PRK01533 224 YGLASFRVGYAVGH-EELIEKLNVVRLPFNVSSLAQKAATIAFGDDEF----IEEIVRVNTEGLRQYESFCKENEIPFYQ 298 (366)
T ss_pred hcChHHHHhHHhCC-HHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 99999999999995 556666666666677999999999999987655 5666677777888888889888999988
Q ss_pred CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhCc
Q 037587 355 SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 355 ~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
++++ |+|++++. ..++...|+ ++||.|++ | ++++||+++ +.++++.++++|+++++..+.
T Consensus 299 ~~~n-f~~~~~~~---------~~~~~~~l~-~~GI~Vr~---~----~~~iRis~~--~~~~~~~l~~al~~~~~~~~~ 358 (366)
T PRK01533 299 SQTN-FIFLPVEN---------GGEIYEACA-HAGFIIRP---F----PNGVRITVG--TREQNEGVISVLQQHFENKKR 358 (366)
T ss_pred CcCc-EEEEeCCC---------HHHHHHHHH-HCCcEEcc---C----CCceEEeCC--CHHHHHHHHHHHHHHHHhccc
Confidence 8775 89999862 124566665 68999997 3 468999998 689999999999998876553
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=384.30 Aligned_cols=352 Identities=20% Similarity=0.335 Sum_probs=284.7
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.+.|+|+.++++++ ++.+.+.+.+... ......|++..|.++||+++++++++.+| ..+++++|+
T Consensus 28 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~ 94 (386)
T PRK07550 28 DGPLIDLSQAVPGYPPPPELLRALAEAAA-----------DPAAHLYGPVEGLPELREAYAAHYSRLYG--AAISPEQVH 94 (386)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHh-----------CcCCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEE
Confidence 345799999998875 4556666555311 02346798888999999999999998766 447889999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|+++.|+|..+...++.. |++++.+++++++++.+|++.+++.+++ ++++|
T Consensus 95 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v 167 (386)
T PRK07550 95 ITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDML-GIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAI 167 (386)
T ss_pred EecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEecCCCcCCCCCHHHHHHHhcc------cCcEE
Confidence 9999999999999999999999999999999998888776 9999999998666788899999998865 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.++|.+++++|+++|+++|++||+||+|.++.+... ...+..... +..+++++++||||
T Consensus 168 ~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~--~~~~~~~~~---------~~~~~~i~~~S~SK 236 (386)
T PRK07550 168 ALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGG--APHDLFADP---------DWDDTLVHLYSFSK 236 (386)
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCcchhhCC---------CccccEEEEecchh
Confidence 9999999999999999999999999999999999999998654332 112222111 12368999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI 350 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 350 (464)
.||++|+|+||++++++ +...+..... ..+++.++|.++..++.+ + ++++++.++.++++++.+.+.|.++ ++
T Consensus 237 ~~g~~G~RiG~i~~~~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 312 (386)
T PRK07550 237 SYALTGHRVGAVVASPA-RIAEIEKFMDTVAICAPRIGQIAVAWGLPN--L-ADWRAGNRAEIARRRDAFRAVFARLPGW 312 (386)
T ss_pred hccCcccceEeeecCHH-HHHHHHHHHhhcccCCCcHHHHHHHHHhcc--H-HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999654 4443433332 234678999999999976 2 5678888899999999999999886 66
Q ss_pred eeecCCccEEEEEecCc-ccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRH-LLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~-~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
.+. +.+|+|+|++++. ..+ ..+++..+++++||.|.||..|+....+++||+++..+++++++++++|+++
T Consensus 313 ~~~-~~g~~~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 313 ELL-ASGAYFAYVRHPFPDRP------SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred eeC-CCceEEEEecCCCCCCC------HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 554 5688999999975 221 2357888888899999999999765568999999977899999999999876
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=390.41 Aligned_cols=349 Identities=18% Similarity=0.279 Sum_probs=271.9
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+.|+++++ ++.+.+++.+..... ........|++..|.++||+++|+++.+. .+++++|+
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-----~~~~d~I~ 99 (402)
T TIGR03542 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDEL-------ASEETFRGYGPEQGYPFLREAIAENDYRG-----RIDPEEIF 99 (402)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhcc-------cccccccCCCCCCCCHHHHHHHHHHHHhc-----CCCHHHEE
Confidence 467899999999875 455666655532110 00012356988889999999999986421 27899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCc-----------EEEEEecCCCCCcccCHHHHHHHHHH
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGV-----------EIVPIHCSSSNGFRITISALENAYQQ 182 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~d~~~l~~~i~~ 182 (464)
+|+|+++++..++ .++.+||.|++++|+|..|...++.. |+ +++.++++++++|.++++..
T Consensus 100 it~Ga~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------ 171 (402)
T TIGR03542 100 ISDGAKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNVMA-GRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE------ 171 (402)
T ss_pred ECCCcHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHc-CCccccccccccceEEEeecchhhCCCCCcccc------
Confidence 9999999999874 56689999999999999999888876 99 99999987656676664221
Q ss_pred HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCC
Q 037587 183 AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (464)
.++++|+++|||||||.++|.+++++|+++|++++++||+||+|.++.+++. ...++..+.. ..
T Consensus 172 -----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~---------~~ 235 (402)
T TIGR03542 172 -----PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS--LPHSIFEIPG---------AK 235 (402)
T ss_pred -----CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC--CCcchhhCCC---------Cc
Confidence 2789999999999999999999999999999999999999999998766542 2233333311 23
Q ss_pred CcEEEEcCCCcCCCCCccEEEEEEecCHHH-------HHHHH-Hh-cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHH
Q 037587 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERV-------VSAAT-KM-SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKR 333 (464)
Q Consensus 263 ~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~-------~~~~~-~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 333 (464)
+++++++||||.||+||+|+||++++++.+ ..... .. ..+++++.++|.++..++.+..+ ++..+.++.
T Consensus 236 ~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~ 313 (402)
T TIGR03542 236 ECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAISY 313 (402)
T ss_pred ccEEEEecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHHHH
Confidence 689999999999999999999999965543 12221 12 23445788999999999887654 345667788
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecC
Q 037587 334 LRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANI 413 (464)
Q Consensus 334 ~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~ 413 (464)
++++++.+.+.|++.|+++.++.+|+|+|++++...+ ..+++..+++++||.|+||+.|+..+++|+||+++.
T Consensus 314 ~~~~~~~~~~~L~~~~~~~~~~~~~~f~~v~l~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~- 386 (402)
T TIGR03542 314 YMENARILRKALEAAGFKVYGGEHAPYLWVKTPEGIS------SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG- 386 (402)
T ss_pred HHHHHHHHHHHHHhcCceecCCCceeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-
Confidence 8999999999999988888888889999999985322 235788888788999999999976567899999875
Q ss_pred CHHHHHHHHHHHHHH
Q 037587 414 TEETLQVALQRIKVF 428 (464)
Q Consensus 414 ~~e~l~~~l~~l~~~ 428 (464)
+++++++++++|+++
T Consensus 387 ~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 387 KRENIVEACERIKEA 401 (402)
T ss_pred CHHHHHHHHHHHHhh
Confidence 889999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=384.56 Aligned_cols=346 Identities=23% Similarity=0.310 Sum_probs=285.3
Q ss_pred CCCCCceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 32 LHNPSGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 32 ~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
.....++++|++++...+. +.+ +++.+... .....|++..|.++||++||++++. ++++
T Consensus 22 ~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~-------~~~~ 81 (373)
T PRK07324 22 DIAESCIDSLTLEELLALAGKNP-EAFYQELG------------QKKLTYGWIEGSPEFKEAVASLYQN-------VKPE 81 (373)
T ss_pred ccccCCCCCCcHHHHHhccCcch-HHHHHHHh------------cCCccCCCCCCCHHHHHHHHHHhcC-------CChh
Confidence 3446789999999987653 334 33333211 2235799989999999999999852 6789
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|++|+|+++++.+++.+++++||+|+++.|+|..+...++.. |++++.++++.+++|.+|++.+++.+.+ ++
T Consensus 82 ~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~l~~~~~~------~~ 154 (373)
T PRK07324 82 NILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPESL-GAEVDYWQLKEENGWLPDLDELRRLVRP------NT 154 (373)
T ss_pred hEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHhCCC------CC
Confidence 9999999999999999999999999999999999998888776 9999999998777899999999887653 78
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. +.++.+. .+++++++|
T Consensus 155 kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~---~~s~~~~------------~~~~I~~~s 219 (373)
T PRK07324 155 KLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS---TPSIADL------------YEKGISTNS 219 (373)
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC---CCChhhc------------cCCEEEEec
Confidence 9999999999999999999999999999999999999999998766432 2343322 267899999
Q ss_pred CCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 271 LSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
|||.||++|+|+||+++ ++.+.+.+.+...+ .+++.++|.++..++++. ++++++.++.++++++.+.+.|++.
T Consensus 220 ~SK~~~~~G~RiG~i~~-~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~~l~~~ 295 (373)
T PRK07324 220 MSKTYSLPGIRVGWIAA-NEEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDEWVAKE 295 (373)
T ss_pred chhhcCCccceeEEEec-CHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999 45566666665543 346778999888888753 5568888999999999999999887
Q ss_pred -CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 349 -GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 349 -g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
++.+..|++|+|+|+.++... ...+++.++++++||.|.||+.|+. ++++||+++. +++.+++++++|++
T Consensus 296 ~~~~~~~p~gg~~~~i~~~~~~------~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~-~~~~l~~~l~rl~~ 366 (373)
T PRK07324 296 PRVSYVKPKAVSTSFVKLDVDM------PSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCC-DTETLKKGLKKLSE 366 (373)
T ss_pred CCceEECCCceEEEEEEeCCCC------CHHHHHHHHHHhcCEEEECccccCC--CCeEEEEecC-CHHHHHHHHHHHHH
Confidence 778888899999999887421 2336888888889999999999974 6799999986 78999999999999
Q ss_pred HHHhh
Q 037587 428 FAQSC 432 (464)
Q Consensus 428 ~l~~~ 432 (464)
+++++
T Consensus 367 ~l~~~ 371 (373)
T PRK07324 367 FLREF 371 (373)
T ss_pred HHHhc
Confidence 99764
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=381.86 Aligned_cols=333 Identities=19% Similarity=0.373 Sum_probs=273.1
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.+++||+.|+|+.+ ++.+.+++.+.. ..+..|++. +.++||+++|++++ +++++|++
T Consensus 19 ~~~~~l~~~~~~~~~p~~~~~a~~~~~-------------~~~~~Y~~~-~~~~lr~~ia~~~~--------~~~~~i~i 76 (354)
T PRK06358 19 NMILDFSANINPLGVPESLKQAITENL-------------DKLVEYPDP-DYLELRKRIASFEQ--------LDLENVIL 76 (354)
T ss_pred cceEEecCCCCCCCCCHHHHHHHHHHH-------------HhhhcCCCc-cHHHHHHHHHHHhC--------CChhhEEE
Confidence 34799999999875 455666665531 345679875 57999999999985 78999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.++ .+ +.|++++|+|+.|...+... |++++.++++.+++|.+| +.+.+.+.. ++++++
T Consensus 77 t~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d-~~~~~~~~~------~~~~v~ 146 (354)
T PRK06358 77 GNGATELIFNIVKVT-KP-KKVLILAPTFAEYERALKAF-DAEIEYAELTEETNFAAN-EIVLEEIKE------EIDLVF 146 (354)
T ss_pred CCCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHHHHHc-CCeeEEEeCccccCCCcc-HHHHHhhcc------CCCEEE
Confidence 999999999999986 44 68999999999999888766 999999999876778898 666555533 688899
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.+++++|+++|+++++++|+||+|.++.+++. . .+...... ..+++++++||||.
T Consensus 147 ~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~--~-~~~~~~~~---------~~~~vi~~~S~SK~ 214 (354)
T PRK06358 147 LCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE--T-ISMINYLE---------NFKNLIIIRAFTKF 214 (354)
T ss_pred EeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc--c-hhHHHhcc---------CCCCEEEEEechhh
Confidence 999999999999999999999999999999999999998776543 2 23333322 34799999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL 353 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 353 (464)
||++|+|+||++++++.+.+.+.+....+.++.++|.++..++++.+ ++++.++.++++++.+.+.|++. |+.+.
T Consensus 215 ~gl~G~RiG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 290 (354)
T PRK06358 215 FAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDKE----YIKKTIQWIKEEKDFLYNGLSEFKGIKVY 290 (354)
T ss_pred ccCcchhheeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHhcCCCcEEc
Confidence 99999999999987666666666666667788999999999997644 36777888899999999999887 78888
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+++|+ |+|++++.. .+++..++ ++||.|+||+.|+..+++++||+++ ++++++.++++|++++
T Consensus 291 ~~~g~-f~~~~~~~~---------~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 291 KPSVN-FIFFKLEKP---------IDLRKELL-KKGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL 353 (354)
T ss_pred CCcce-EEEEEcCch---------HHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 88776 899998741 25777776 5799999999996545689999998 6899999999998875
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=386.90 Aligned_cols=357 Identities=31% Similarity=0.527 Sum_probs=296.6
Q ss_pred ceEEeeccccccc--HHHHHHHHHhhhh-hHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cE
Q 037587 37 GIIQMGLAENQLS--FDLLESWLASNQE-AVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KL 112 (464)
Q Consensus 37 ~~i~l~~~~n~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i 112 (464)
++|+|+.|.+... .+.+++++++... . ........|+++.|.++||+++|+++++..+ ++++++ +|
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i 71 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGA--------ATSSSFLGYPPPQGYPELREAIADFLGRRYG--VPVDPEANI 71 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHH--------HHHTGCTSSTCTTHHHHHHHHHHHHHHHHHT--HHTTGGEGE
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHh--------hcccccccCCCchhhHHHHHHHHHHhhhccC--cccccceEE
Confidence 5799999988875 2334444444321 1 0125677999999999999999999996655 567888 99
Q ss_pred EEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 113 VLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
++++|+++++..++..+ .++||+|++++|+|+.+...++.. |+++++++++.+++|.+|++.|++.+++....+.+++
T Consensus 72 ~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 150 (363)
T PF00155_consen 72 LVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLL-GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPK 150 (363)
T ss_dssp EEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHT-TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEE
T ss_pred EEecccccchhhhhhcccccccccceecCCcccccccccccc-Cceeeeccccccccccccccccccccccccccccccc
Confidence 99999999999999999 889999999999999999999987 9999999987778899999999999986443333578
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
++++++||||||.++|.+++++|+++|+++++++|+||+|.++.++.. .+.+....+. ...++++++||
T Consensus 151 ~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~---------~~~~vi~~~S~ 219 (363)
T PF00155_consen 151 AVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDP--DFGPIRSLLD---------EDDNVIVVGSL 219 (363)
T ss_dssp EEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSS--HTHHHHGHHT---------TTSTEEEEEES
T ss_pred eeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCC--ccCccccccc---------ccccceeeeec
Confidence 999999999999999999999999999999999999999999877644 3333222333 22459999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
||+||++|+|+||+++ ++.+.+.++.....+..+++.|.++..++.+.....++++++++.++++++.+.+.|++.|+.
T Consensus 220 SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~ 298 (363)
T PF00155_consen 220 SKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGIT 298 (363)
T ss_dssp TTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred cccccccccccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999 566666777666666568899999999999877556689999999999999999999999999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRI 425 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 425 (464)
+.++++|+|+|+.++.. ++.+++++|+++.||.+.||..|+. ++++||+++..+++++++++++|
T Consensus 299 ~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 299 VLPPEAGFFLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp EEHHSBSSEEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred eeeccCccEEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 99999999999998853 3457889998777999999999986 88999999557999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-48 Score=388.93 Aligned_cols=357 Identities=23% Similarity=0.393 Sum_probs=290.5
Q ss_pred CceEEeecccccc---cHHHHHHHHHhhhhhHHhhhcccccccc-cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc
Q 037587 36 SGIIQMGLAENQL---SFDLLESWLASNQEAVELKRNGESLFRE-LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 36 ~~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~ 111 (464)
+.+|+|+.+..+. |...+++.+...... .... ...|.++.|..+||++|++++....| +.+++++
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~---------~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g--~~~~~~~ 157 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRN---------YGASLALQYGPTAGLPELREAIAAYLLARRG--ISCEPEQ 157 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhh---------cchhhhhcCCCCCCcHHHHHHHHHHHHHhcC--CccCcCe
Confidence 6778898876433 344455544443211 0122 46788889999999999999986655 6789999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
|++|+|++++++++.+.+++|||+|++++|+|.+...+++.. |++++++|+|++ ++|+++|++.+++. ++|
T Consensus 158 IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~-g~~~~~vp~d~~---G~~~e~le~~~~~~-----~~k 228 (459)
T COG1167 158 IVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEAL-GARVIPVPVDED---GIDPEALEEALAQW-----KPK 228 (459)
T ss_pred EEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHc-CCcEEecCCCCC---CCCHHHHHHHHhhc-----CCc
Confidence 999999999999999999999999999999999999999887 999999999854 48999999999763 788
Q ss_pred EEEEe-CCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 192 GVLIT-NPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 192 ~vil~-~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
+++++ +-|||||.+||.+++++|+++|+++|++||+||+|+++.|++. +..++..+ +..++|++++|
T Consensus 229 ~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~--p~~~l~~l----------d~~~rViy~gS 296 (459)
T COG1167 229 AVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGP--PPPPLKAL----------DAPGRVIYLGS 296 (459)
T ss_pred EEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCC--CCCChHhh----------CCCCCEEEEee
Confidence 76554 3489999999999999999999999999999999999988766 33455544 24589999999
Q ss_pred CCcCCCCCccEEEEEEecCHHHHHHHH-HhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 037587 271 LSKDFSMPGFRVGMIYSNNERVVSAAT-KMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA- 348 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~~~~~~~~~-~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 348 (464)
|||++. ||+|+||++++++.+..... +......++.+.|.+++..+.++.+ .+|++++|..|+++++.+.+.|+++
T Consensus 297 FSK~l~-PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~l~~~L~~~~ 374 (459)
T COG1167 297 FSKTLA-PGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYL 374 (459)
T ss_pred ehhhcc-cccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999996 99999999996554443322 2223345788999999999997666 9999999999999999999999997
Q ss_pred --CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeC-CCCCCCCC--CCeEEEEeecCCHHHHHHHHH
Q 037587 349 --GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP-GSSCHCNE--PGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 349 --g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~p-g~~f~~~~--~~~~Ris~~~~~~e~l~~~l~ 423 (464)
++++..|.+|+|+|++++...+. .++...++ ++||.+.| |..|.... .++||++++..++++++++++
T Consensus 375 ~~~~~~~~p~gG~flwl~l~~~~~~------~~l~~~a~-~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~ 447 (459)
T COG1167 375 PELATWTRPEGGLFLWLELPEGIDA------RELLAAAL-EKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIK 447 (459)
T ss_pred CCCeeeecCCceEEEEEEcCCCCCH------HHHHHHHH-HCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHH
Confidence 36788899999999999976442 24566654 67999998 88887643 458999999989999999999
Q ss_pred HHHHHHHhhC
Q 037587 424 RIKVFAQSCN 433 (464)
Q Consensus 424 ~l~~~l~~~~ 433 (464)
+|.+++.+..
T Consensus 448 ~l~~~~~~~~ 457 (459)
T COG1167 448 RLAALLREAA 457 (459)
T ss_pred HHHHHHHHHh
Confidence 9999987653
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=380.03 Aligned_cols=360 Identities=26% Similarity=0.494 Sum_probs=294.6
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
...+|+|+.+.+.++ ++.+.+++.+... .....|++..|..+||+++|+++++.++ ..+++++|+
T Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~ 95 (393)
T PRK05764 30 GRDVISLGAGEPDFDTPEHIKEAAIEALD------------DGKTKYTPAAGIPELREAIAAKLKRDNG--LDYDPSQVI 95 (393)
T ss_pred cCCEEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCCcCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 356899999988876 3556666555321 1234699888999999999999988766 346889999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++.+++++|.+|++.+++.+.+ ++++|
T Consensus 96 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v 168 (393)
T PRK05764 96 VTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLA-GGVPVFVPTGEENGFKLTVEQLEAAITP------KTKAL 168 (393)
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHc-CCEEEEEecCcccCCcCCHHHHHHhhCc------cceEE
Confidence 9999999999999999999999999999999998888776 9999999998667889999999998754 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.++|.+++++|+++|+++++++|+||+|.++.|.+. .+.++.++..+ ..+++++++||||
T Consensus 169 ~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~--------~~~~~i~~~s~SK 238 (393)
T PRK05764 169 ILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGA--EFTSIASLSPE--------LRDRTITVNGFSK 238 (393)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCC--CcccHHHcCCC--------CcCCEEEEecCcc
Confidence 9999999999999999999999999999999999999998877544 33454444221 3478999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI 350 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 350 (464)
.+|++|+|+||++++ +.+.+.+..... .+.++++.|.++..++.. . .+++++.++.++++++.+.+.|+++ |+
T Consensus 239 ~~~~~G~RiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 314 (393)
T PRK05764 239 AYAMTGWRLGYAAGP-KELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--P-QDEVEEMRQAFEERRDLMVDGLNEIPGL 314 (393)
T ss_pred cccCccceeEEEecC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHcC--C-hHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999985 445555544432 345788999999999873 1 4567888888999999999999998 89
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.+.++++|+|+|++++....... ....+++..+++++||.|+||..|+. ++++||+++. +++++++++++|.++++
T Consensus 315 ~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~-~~~~~~~~i~~l~~~~~ 390 (393)
T PRK05764 315 ECPKPEGAFYVFPNVSKLLGKSI-TDSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYAT-SLEDLEEGLERIERFLE 390 (393)
T ss_pred cccCCCcceEEEEeccccccccc-CCHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 98889999999999986432111 12246778888888999999998864 7899999985 89999999999999987
Q ss_pred hhC
Q 037587 431 SCN 433 (464)
Q Consensus 431 ~~~ 433 (464)
+++
T Consensus 391 ~~~ 393 (393)
T PRK05764 391 SLK 393 (393)
T ss_pred hhC
Confidence 653
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=379.46 Aligned_cols=354 Identities=21% Similarity=0.374 Sum_probs=282.5
Q ss_pred CceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
.++|+|+.+.+..+. +.+.+.+.+.. ......|++..|.++||+++++++.+.++ +.++++ +|+
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~------------~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~ 89 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEAAQEAI------------AGGVNQYPPGPGIPELRAAIAAQRRRRYG--LEYDPDTEVL 89 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHH------------hcCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 367999998765532 22333333321 01235799889999999999999988766 345665 799
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCC-CCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS-NGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++..++.+++++||+|+++.|+|+.+...+... |.+++.++++++ ++|.+|++.+++.+.+ ++++
T Consensus 90 ~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~ 162 (387)
T PRK07777 90 VTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMA-GAHRVPVPLVPDGRGFALDLDALRAAVTP------RTRA 162 (387)
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHC-CCEEEEeecCCccCCCcCCHHHHHHhcCc------ccEE
Confidence 9999999999999999999999999999999998888766 999999998765 4688999999988754 7899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|+++|||||||.++|.+++++|+++|+++++++|+||+|.++.|.+. .+.++..+.. ..+++++++|||
T Consensus 163 v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~S~S 231 (387)
T PRK07777 163 LIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA--RHLPLATLPG---------MRERTVTISSAA 231 (387)
T ss_pred EEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC--CcccHhhCCC---------CcCcEEEEeech
Confidence 99999999999999999999999999999999999999998877544 3334333311 246899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.||++|+|+||++++++ +.+.+..... .+..+++.|.++..++.+. .+++++.++.++++++.+.+.|++.|+
T Consensus 232 K~~g~~GlRiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 307 (387)
T PRK07777 232 KTFNVTGWKIGWACGPAP-LIAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLAEAGF 307 (387)
T ss_pred hhccCcCceeEEEecCHH-HHHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999998554 4444444332 2346778888888888754 356788889999999999999999999
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC---CCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN---EPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~---~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
++.++++|+|+|++++.... ....+++..+++++||.|.||..|+.. ..++|||+++. +++++++++++|++
T Consensus 308 ~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~~l~~~l~~l~~ 382 (387)
T PRK07777 308 EVHDSAGTYFLCADPRPLGY----DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDDTLDEAIRRLRA 382 (387)
T ss_pred CccCCCcceEEEecccccCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 99999999999999863211 123468888887889999999988642 24689999996 89999999999988
Q ss_pred HHH
Q 037587 428 FAQ 430 (464)
Q Consensus 428 ~l~ 430 (464)
++.
T Consensus 383 ~~~ 385 (387)
T PRK07777 383 LRG 385 (387)
T ss_pred Hhc
Confidence 753
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=389.39 Aligned_cols=356 Identities=20% Similarity=0.258 Sum_probs=272.4
Q ss_pred ceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHH-cCCCCCCC-CCcEE
Q 037587 37 GIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARI-RGNKVKFD-PNKLV 113 (464)
Q Consensus 37 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~-~~~~~~~~-~~~i~ 113 (464)
++|+|+.+++.+++ +.+.++.... .. ..|+++.|.+++|++|++++.+. .+...... .++|+
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~~~~-------------~~--~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~ 165 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELVDGI-------------IG--DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLF 165 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHH-------------hc--CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEE
Confidence 57999999988865 5566654432 12 35999999999999999965443 32221112 34999
Q ss_pred EeCChHHHHHHHHHH-----hcCCCCeEEEcCCCCCChhhhcccC-CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC
Q 037587 114 LTAGSTAANETLMFC-----LADPGDAFLLPTPYYPGFDRDLKWR-PGVEIVPIHCSSSNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 114 it~G~~~al~~~~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
+|+|+++++..++.+ +++|||+|++++|+|+.|...+... .|.++++++.+++++|.+|++.+++++..
T Consensus 166 vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~----- 240 (527)
T PRK09275 166 AVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP----- 240 (527)
T ss_pred EeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-----
Confidence 999999999999886 6899999999999999998876543 25667777776677899999999987643
Q ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh--CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKS--KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~--~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
++|+|+++|||||||.++|.+++++|+++|++ ++++||+||+|.++.+ . +.++.... ++++
T Consensus 241 -~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~---~~s~~~~~-----------~~~~ 303 (527)
T PRK09275 241 -SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--D---FRSLFAVL-----------PYNT 303 (527)
T ss_pred -CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--c---ccCHHHhC-----------CCCE
Confidence 89999999999999999999999999999964 5999999999998543 2 23544332 2689
Q ss_pred EEEcCCCcCCCCCccEEEEEEecCHHHHH-H---H--------------------------------HHhcc--cCCCCh
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYSNNERVVS-A---A--------------------------------TKMSS--FGLVSS 307 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~~~~~~~~-~---~--------------------------------~~~~~--~~~~s~ 307 (464)
++++||||.||++|||+||++++++.+.+ . + +++.. ...+++
T Consensus 304 I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~ 383 (527)
T PRK09275 304 ILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLST 383 (527)
T ss_pred EEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999997653211 1 1 12211 234667
Q ss_pred HHHHHH-----HHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccc---cCC------
Q 037587 308 QTQYLL-----SRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV---SNT------ 373 (464)
Q Consensus 308 ~~q~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~---~~~------ 373 (464)
+.|.++ .++++.. +.+.+++++.+++|++.+.+.|. .++...+++|+||+|++++.... ...
T Consensus 384 p~Q~a~al~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~ 459 (527)
T PRK09275 384 PQQVQMALFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLK 459 (527)
T ss_pred HHHHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhh
Confidence 777762 3445543 45688899999999999988883 23444578999999999975321 100
Q ss_pred -hhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhCc
Q 037587 374 -FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 374 -~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
..+..+++.+|++++||.+.||+.|+. ..+++|||++..+++++.++.++|+++++++..
T Consensus 460 ~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 460 KNYSPVDLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred ccCCHHHHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 013467899999999999999999985 467899999977899999999999999988764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=403.80 Aligned_cols=372 Identities=19% Similarity=0.267 Sum_probs=286.3
Q ss_pred CCCCCCCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC
Q 037587 28 PYDQLHNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK 106 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~ 106 (464)
.|.++..+.++|+|++|+|+++ ++.+.+++.+.. ... .+ +.|.+++|++|++++.+++| ++
T Consensus 689 ~~~~~~~g~~vI~LsinE~d~ppPp~V~eAi~eal-------------~~~-~~--s~g~pdlr~aLa~~la~~~G--v~ 750 (1082)
T PLN02672 689 LSVSGSQESSLIHMDVDESFLPVPSAVKASIFESF-------------VRQ-NI--SESETDPRPSILQFIKSNYG--FP 750 (1082)
T ss_pred cCCcccCCCCEEEEeCCCCCCCCCHHHHHHHHHHH-------------hhc-CC--CCCChHHHHHHHHHHHHHhC--cC
Confidence 3666666678999999999996 466777766531 111 12 34568899999999998877 44
Q ss_pred CCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 107 FDP-NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 107 ~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
.++ ++|++|+|+++++..++.+++++||.|+++.|+|+.|...++.. |++++.+|++++++|.+|++.+++++.+
T Consensus 751 ~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~-Ga~vv~Vpl~~e~gf~lD~d~Le~al~~--- 826 (1082)
T PLN02672 751 TDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFL-KANFRRIPTKSSDGFKLTAKTLASTLET--- 826 (1082)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHhcc---
Confidence 443 58999999999999999999999999999999999999999887 9999999998777899999999998753
Q ss_pred cCCceEEEEEeCCC-CCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 186 LNLKVKGVLITNPS-NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 186 ~~~~~~~vil~~P~-NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
.+.++|+++||| ||||.++|.+++++|+++|+++|++||+||+|.++.|.+.+....++......+. ......+
T Consensus 827 --~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~---~~sks~n 901 (1082)
T PLN02672 827 --VKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLK---SSNPSFA 901 (1082)
T ss_pred --CCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhc---cccCCce
Confidence 123578999997 9999999999999999999999999999999998888653111112222221110 0001247
Q ss_pred EEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHH---HHcC--CchhhHHHHHHHHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLS---RMLS--DKKFTCNYMKENRKRLRKRKE 339 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~---~~l~--~~~~~~~~~~~~~~~~~~~~~ 339 (464)
|++++||||.|+++|+|+||++++++.+.+.+.............|.++. .++. +..+ .+++.+.++.++++++
T Consensus 902 VIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd 980 (1082)
T PLN02672 902 VALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAE 980 (1082)
T ss_pred EEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999777566666554333323333444433 3332 4455 5678888999999999
Q ss_pred HHHHHHHhCCCeeecCCccEEEEEecCcccc------cC----C-hhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 037587 340 MLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV------SN----T-FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRI 408 (464)
Q Consensus 340 ~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~------~~----~-~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ri 408 (464)
++.+.|+++|+.+.+|+||||+|++++.... .. . ..+..+++..++++.||.|.||..|+ .++|+||
T Consensus 981 ~L~e~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG--~~g~~RI 1058 (1082)
T PLN02672 981 RLKETLEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTG--IPGYCRF 1058 (1082)
T ss_pred HHHHHHHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccC--CCCeEEE
Confidence 9999999999999999999999998753211 00 0 01245788999988899999998776 3789999
Q ss_pred EeecCCHHHHHHHHHHHHHHHH
Q 037587 409 CFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 409 s~~~~~~e~l~~~l~~l~~~l~ 430 (464)
+++. +++++++++++|+++.+
T Consensus 1059 sfa~-~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1059 SFAL-EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred EecC-CHHHHHHHHHHHHHHHH
Confidence 9995 88999999999999765
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=348.88 Aligned_cols=358 Identities=20% Similarity=0.324 Sum_probs=307.9
Q ss_pred CCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 34 NPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
...++|.|-++.-.++ +|.+.+++++..+ .....|+ .+..++.++|++|+.++++. .+.++-|
T Consensus 23 g~~DvlPmWVADMDf~~pp~i~~Al~~rvd------------hGvfGY~--~~~~~~~~ai~~w~~~r~~~--~i~~e~i 86 (388)
T COG1168 23 GNEDVLPMWVADMDFPTPPEIIEALRERVD------------HGVFGYP--YGSDELYAAIAHWFKQRHQW--EIKPEWI 86 (388)
T ss_pred CCCCcceeeeecccCCCCHHHHHHHHHHHh------------cCCCCCC--CCCHHHHHHHHHHHHHhcCC--CCCcceE
Confidence 4468888888887775 5778888887632 2345666 46688999999999999884 4788899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC-CCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
++++|.--++..++++|.++||.|++..|.|+++....... |.++++.|+. .++.|.+|.++|++++.+ ++++
T Consensus 87 ~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n-~R~~i~~pL~~~~~~y~iD~~~LE~~~~~-----~~vk 160 (388)
T COG1168 87 VFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLN-GRKVIENPLVEDDGRYEIDFDALEKAFVD-----ERVK 160 (388)
T ss_pred EEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhc-CcEEEeccccccCCcEEecHHHHHHHHhc-----CCcc
Confidence 99999999999999999999999999999999999999877 9999999987 466799999999999876 3689
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
++++||||||||.+++.++|++|.++|.+||+.||+||+|+++.+.+. .+.++..+.+. -.++.+.+.|.
T Consensus 161 l~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~--~h~~~a~ls~~--------~a~~~it~~sa 230 (388)
T COG1168 161 LFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH--KHIPFASLSER--------FADNSITLTSA 230 (388)
T ss_pred EEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC--CccchhhcChh--------hhcceEEEeec
Confidence 999999999999999999999999999999999999999999999875 44555555332 34899999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHH-HHh--cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAA-TKM--SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~-~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
||+|.++|+++++++.+++.+.... +++ .....+|.++..|..++++++ ..|+.++++.++.+++++.+.|.+.
T Consensus 231 SKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G---~~WLd~L~~yl~~N~~~~~~~l~~~ 307 (388)
T COG1168 231 SKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG---EPWLDELLEYLKDNRDYVADFLNKH 307 (388)
T ss_pred cccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999888875543 333 233457889999999999987 5689999999999999999999997
Q ss_pred --CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 037587 349 --GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426 (464)
Q Consensus 349 --g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 426 (464)
++++..|+|.+-+|+++....-. +.++...++.+.+|.+.+|..||..+.|++|+++++ ++..+++++++|+
T Consensus 308 ~P~v~v~~p~gTYL~WLD~r~l~l~-----d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~ 381 (388)
T COG1168 308 LPGVKVTEPQGTYLAWLDCRELGLD-----DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLK 381 (388)
T ss_pred CCCcEEecCCCceeeeeeccccCCC-----hHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHH
Confidence 89999999999999999875332 235778899999999999999999999999999996 9999999999999
Q ss_pred HHHHhh
Q 037587 427 VFAQSC 432 (464)
Q Consensus 427 ~~l~~~ 432 (464)
.++++.
T Consensus 382 ~al~~~ 387 (388)
T COG1168 382 RALKKR 387 (388)
T ss_pred HHHhcc
Confidence 988765
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=371.59 Aligned_cols=315 Identities=15% Similarity=0.237 Sum_probs=249.8
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA 116 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~ 116 (464)
++|+|+.|+|+++. .....+||++. ..+||+++|++++ +++++|++|+
T Consensus 17 ~~i~l~~Nenp~~~-----------------------~~~~~~Yp~~~-~~~lr~~ia~~~~--------~~~~~I~it~ 64 (332)
T PRK06425 17 RIIDFSANINDFMD-----------------------IGDISIYPEIS-YTDIEDQIKIYTQ--------GLKIKVLIGP 64 (332)
T ss_pred CEEEeccccCCCcC-----------------------hhhcccCcCcC-HHHHHHHHHHHhC--------CCcceEEECC
Confidence 67999999999851 13456898764 5999999999987 6899999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEe
Q 037587 117 GSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT 196 (464)
Q Consensus 117 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~ 196 (464)
|+++++.+++. ++++|+ |++++|+|+.|...++.. |++++.+|++. +.+|.+.+++ .++++|+++
T Consensus 65 Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y~~~~~~~-G~~v~~vp~~~---~~~~~~~l~~---------~~~k~v~l~ 129 (332)
T PRK06425 65 GLTHFIYRLLS-YINVGN-IIIVEPNFNEYKGYAFTH-GIRISALPFNL---INNNPEILNN---------YNFDLIFIV 129 (332)
T ss_pred CHHHHHHHHHH-HhCCCc-EEEeCCChHHHHHHHHHc-CCeEEEEeCCc---ccCcHHHHhh---------cCCCEEEEe
Confidence 99999999997 467764 677799999999999887 99999999863 3445544432 278899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC
Q 037587 197 NPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS 276 (464)
Q Consensus 197 ~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g 276 (464)
|||||||.++|.+++++|+++|++++++||+||+|.++.+.+. .+...+.+ ..+++++++||||+||
T Consensus 130 nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~----~~~~~~~~---------~~~~vi~~~SfSK~~~ 196 (332)
T PRK06425 130 SPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA----EEDVLLNR---------SYGNVIIGRSLTKILG 196 (332)
T ss_pred CCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc----hhHHHHhc---------cCCCEEEEeecHHhcC
Confidence 9999999999999999999999999999999999998765432 24444433 3378999999999999
Q ss_pred CCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC
Q 037587 277 MPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN 356 (464)
Q Consensus 277 ~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 356 (464)
+||+|+||+++++ .+.+.+.+....+.++.+.+.++ ..... ..++++.++.++++++.+.+.|+++|+.+..+.
T Consensus 197 l~GlRiGy~v~~~-~li~~l~~~~~~~~~~~~~~~~l----~~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~ 270 (332)
T PRK06425 197 IPSLRIGYIATDD-YNMKISRKITEPWSVCDPAIDFI----RSIDL-DYVAKHSLDIMENERSYLINNLEAMGFRAAGDP 270 (332)
T ss_pred CchhhheeeecCH-HHHHHHHHcCCCCccCHHHHHHH----HHhhh-HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC
Confidence 9999999999954 46666666665555555544333 22222 455677889999999999999999998876444
Q ss_pred ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 357 AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 357 ~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+|+|+|++++. ..++.+.++ ++||.|+||..|+..+++|+||+++ ++++++.++++|++++
T Consensus 271 ~g~f~~~~~~~---------~~~~~~~l~-~~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 271 SANFITFMIPD---------AHDFYSYLL-KNGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL 331 (332)
T ss_pred CceEEEEEcCC---------HHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 55699999861 235677776 5799999999997555689999998 5899999999998765
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=373.88 Aligned_cols=334 Identities=19% Similarity=0.257 Sum_probs=258.7
Q ss_pred CCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 34 NPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
.+.++|+|+.|+|+++ ++.+.+++.+. ......|++.. ..+||++||++++ +++++|
T Consensus 20 ~~~~~i~l~~~~n~~~~~~~~~~a~~~~-------------~~~~~~Y~~~~-~~~Lr~aia~~~~--------v~~~~I 77 (360)
T PRK07392 20 PPDAILDFSASINPLGPPESVIAAIQSA-------------LSALRHYPDPD-YRELRLALAQHHQ--------LPPEWI 77 (360)
T ss_pred CcccEEEeCCcCCCCCCCHHHHHHHHHH-------------HHHhhcCCCcC-HHHHHHHHHHHhC--------cChhhE
Confidence 3457899999999985 46666666543 12356798764 5899999999984 789999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCc---ccCHHHHHHHHHHHhhcCCc
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGF---RITISALENAYQQAQTLNLK 189 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~---~~d~~~l~~~i~~~~~~~~~ 189 (464)
++|+|++++|.+++.++. +||.|++++|+|+.|...++.. |++++.++++.++++ ..+++.+++.. .+
T Consensus 78 ~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~ 148 (360)
T PRK07392 78 LPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRALRAF-GATVKELPLPLDQPSPGLTLRLQTLPPQL-------TP 148 (360)
T ss_pred EECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHHHHHc-CCeEEEEecccccCCcccccCHHHHHHhc-------cC
Confidence 999999999999998875 6899999999999999999877 999999999765554 24455554332 26
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++++++|||||||.+++.+++.+++ +++++ +|+||+|.++.+.+. ..+...... ..+++++++
T Consensus 149 ~~~~~l~nP~NPTG~~~~~~~l~~l~---~~~~~-~IiDE~y~~~~~~~~---~~s~~~~~~---------~~~~vi~i~ 212 (360)
T PRK07392 149 NDGLLLNNPHNPTGKLWSREAILPLL---EQFAL-VVVDEAFMDFLPPDA---EQSLIPCLA---------EYPNLIILR 212 (360)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHH---HHCCE-EEEECchhhhccCcc---ccchHHHhh---------cCCCEEEEE
Confidence 78899999999999999987766655 46675 666999999766432 234333333 237899999
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA- 348 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 348 (464)
||||+||++|+|+||++++++ +.+.+.+....+.++.++|.++..++++..+ .++.++.++++++.+.+.|+++
T Consensus 213 S~SK~~~l~GlRiG~~v~~~~-~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~ 287 (360)
T PRK07392 213 SLTKFYSLPGLRLGYAIAHPD-RLQRWQQWRDPWPVNGLAAAAAIAALADRDF----QQQTWAWLPPAREALFQGLASLP 287 (360)
T ss_pred echhhhcCCchheeeeeCCHH-HHHHHHhhCCCCCCCHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999654 4455555555567899999999999987655 5555667888899999999887
Q ss_pred CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 349 GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 349 g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
|+.+.+ .+++|+|++++. +..+++..+++++||.|+||..|+..+++|+||+++. .++.+.+.+.|+++
T Consensus 288 ~~~~~~-~~~~fl~~~~~~--------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~l~~al~~~ 356 (360)
T PRK07392 288 GLTPLP-SAANFLLVQSQG--------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT--EAENQRLLEALAAI 356 (360)
T ss_pred CcEECC-CCCCEEEEEcCC--------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHH
Confidence 777765 567899999863 1235777877788999999999976567899999984 55566666666655
Q ss_pred HH
Q 037587 429 AQ 430 (464)
Q Consensus 429 l~ 430 (464)
+.
T Consensus 357 ~~ 358 (360)
T PRK07392 357 LA 358 (360)
T ss_pred hh
Confidence 43
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=374.20 Aligned_cols=334 Identities=16% Similarity=0.257 Sum_probs=267.8
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.|+|+++ ++.+.+++.... .....|++. +..+||++||++++ +++++|+
T Consensus 19 ~~~~i~l~~~~~~~~~p~~~~~a~~~~~-------------~~~~~y~~~-~~~~lr~~ia~~~~--------~~~~~i~ 76 (356)
T PRK08056 19 PDQLLDFSANINPLGMPVSLKRAIIDNL-------------DCAERYPDV-EYRHLHQALARHHQ--------VPASWIL 76 (356)
T ss_pred hhhEEEeccccCCCCCCHHHHHHHHHHH-------------HhcccCcCc-cHHHHHHHHHHHhC--------cChhhEE
Confidence 457899999999985 466666665431 223468765 58999999999985 6899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.++ .+|+ +++++|+|..|...++.. |++++.++++++++|.+| +++++.+. +++++|
T Consensus 77 it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~-~~~~~~~~------~~~k~v 146 (356)
T PRK08056 77 AGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQQV-GCEIRRYSLREADGWQLT-DAILEALT------PDLDCL 146 (356)
T ss_pred ECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHc-CCeEEEEecccccCCCcc-HHHHHhcc------CCCCEE
Confidence 9999999999999887 6776 677899999998888877 999999999766677777 44444443 378899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.+... .+.+ .+. ..+++++++||||
T Consensus 147 ~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~---~~~---------~~~~~i~~~S~SK 212 (356)
T PRK08056 147 FLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDET--GFIP---QLA---------DNPHLWVLRSLTK 212 (356)
T ss_pred EEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcch--HHHH---Hhc---------cCCCEEEEEechh
Confidence 9999999999999999999999999999999999999998755432 1122 222 2268999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRC 352 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 352 (464)
.||++|+|+||++++++.+.+.+.+....++++.+.|.++..++++..+ .++.++.++++++++.+.|+++ ++.+
T Consensus 213 ~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~ 288 (356)
T PRK08056 213 FYAIPGLRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDRAY----QQATWQWLAEEGARFYQALCALPLLTV 288 (356)
T ss_pred hccCcchhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9999999999999866556566666566667888999999999976554 6777888899999999999887 7777
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.++. ++|+|++++.. ..+++..++ ++||.|+||..|....++|+||+++ ++++++.++++|+++++
T Consensus 289 ~~~~-~~~~~~~~~~~--------~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 289 WPGR-ANYLFLRCERP--------DIDLQRALL-TQRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVLT 354 (356)
T ss_pred cCCC-CcEEEEEcCCC--------hHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHHc
Confidence 7665 57999998731 125677776 6799999999996555679999998 58999999999988764
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=345.36 Aligned_cols=359 Identities=21% Similarity=0.355 Sum_probs=300.1
Q ss_pred ceEEeecccccc----c-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc
Q 037587 37 GIIQMGLAENQL----S-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 37 ~~i~l~~~~n~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~ 111 (464)
.+|.|+.+.+.. . .+...+++..... ....+.|.|..|....|+++|+|+.+... ..+++++
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~-----------Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~--~kl~a~D 128 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALR-----------SGKGNGYAPSVGILPARRAVAEYLNRDLP--NKLTADD 128 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHh-----------cCCCCCcCCccccHHHHHHHHHHhhcCCC--CccCcCc
Confidence 578888875543 1 1333333333211 15578899999999999999999886544 3478999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
|++|+|-++||+.++.+|.+||..||+|.|+|+-|...+... |+++.++++-++.+|.+|++.++..+++ ++.
T Consensus 129 V~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~-~lEVR~ydlLPe~~weIDL~~veal~DE------NT~ 201 (447)
T KOG0259|consen 129 VVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYS-GLEVRYYDLLPEKDWEIDLDGVEALADE------NTV 201 (447)
T ss_pred eEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhc-CceeEeecccCcccceechHHHHHhhcc------Cee
Confidence 999999999999999999999999999999999888877766 9999999998999999999999999876 899
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
++++.|||||+|.+||.+.|++|++.|+++++.||.||+|.++.|++. +|.++.++... --|+.++|+
T Consensus 202 AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~--pfvpmg~fssi----------VPVitlggi 269 (447)
T KOG0259|consen 202 AIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK--PFVPMGKFSSI----------VPVITLGGI 269 (447)
T ss_pred EEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC--Cccchhhcccc----------CceEeeccc
Confidence 999999999999999999999999999999999999999999999988 78887777543 358889999
Q ss_pred CcCCCCCccEEEEEEecCH-------HHHHHHHHhccc-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 272 SKDFSMPGFRVGMIYSNNE-------RVVSAATKMSSF-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~-------~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
||-|=+||||+||++..+. .+.+.+..+... ..++++.|.|+-..|.... +++.......++.+.+...+
T Consensus 270 sKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp--~efF~k~~~~lk~na~l~y~ 347 (447)
T KOG0259|consen 270 SKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP--EEFFDKKLSFLKSNADLCYS 347 (447)
T ss_pred ccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh--HHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999986422 122333333333 3467899999999998765 67789999999999999999
Q ss_pred HHHhC-CCe-eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHH
Q 037587 344 GLKVA-GIR-CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVA 421 (464)
Q Consensus 344 ~l~~~-g~~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 421 (464)
.|++. ++. ...|+|.+|+|+++.-.. -..++++.+|+.+|.+|+.+.+.||..|+. ++|+|++++ ++.+.++++
T Consensus 348 ~Lk~IP~l~cp~kPeg~mylmv~l~~s~-~~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~i~-~~~~~leea 423 (447)
T KOG0259|consen 348 RLKDIPCLTCPVKPEGCMYLMVKLNLSL-FPDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIVIT-VEEEMLEEA 423 (447)
T ss_pred HHhcCCCcccCcCCCcceEEEeccchhh-hccccccHHHHHHHhhhcceEEeccccccC--CCeEEEEEc-cChHHHHHH
Confidence 99998 777 567899999999986431 123456678999999999999999999974 899999999 488999999
Q ss_pred HHHHHHHHHhhC
Q 037587 422 LQRIKVFAQSCN 433 (464)
Q Consensus 422 l~~l~~~l~~~~ 433 (464)
..||+.|++++-
T Consensus 424 ~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 424 FSRIKEFCDRHS 435 (447)
T ss_pred HHHHHHHHHhhh
Confidence 999999998776
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=374.42 Aligned_cols=327 Identities=19% Similarity=0.274 Sum_probs=262.1
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.|+|+++ ++.+.+++.+.. .....|++ .|.++||++||++++ +++++|+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~I~ 86 (357)
T PRK14809 29 PDDLVKLSSNENPHGPSPAAVEAIREAA-------------ERVHSYPK-ASHADLTAALADRWD--------VSPEQVW 86 (357)
T ss_pred ccceeEecCCCCCCCCCHHHHHHHHHHH-------------hhhhcCCC-CCHHHHHHHHHHHhC--------CCcceEE
Confidence 457899999999985 465666665531 23457875 578999999999985 7899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++.+++++++++||.|++++|+|+.+...+... |.+++.++++.+++|.++.+.+.+... ++++|
T Consensus 87 it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~-g~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~k~i 158 (357)
T PRK14809 87 LANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYH-HGEVREYPVSKADDFEQTADTVLDAYD-------GERIV 158 (357)
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEEecccCcCCCcCHHHHHHhhc-------CCcEE
Confidence 9999999999999999999999999999999777766666 999999998766678888887766542 57899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++++++|++ +++||+||+|.++.+.. +...... ..+++++++||||
T Consensus 159 ~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~------~~~~~~~---------~~~~vi~~~SfSK 222 (357)
T PRK14809 159 YLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP------SAVALVE---------ERDDVAVLRTFSK 222 (357)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc------hhHHHHh---------hCCCEEEEecchh
Confidence 999999999999999999999999875 78999999999865421 2122222 2378999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL 353 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 353 (464)
.||++|+|+||++++++ +.+.+.+....+.++.++|.++..++.+.+ ++++.++.++++++.+.+.|...+ .
T Consensus 223 ~~~~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~~---~ 294 (357)
T PRK14809 223 AYGLAGLRLGYAVVPEE-WADAYARVNTPFAASELACRAGLAALDDDE----HVERTVETARWAREYIREELDAPT---W 294 (357)
T ss_pred HhcCcchhheeeecCHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHhcCcc---C
Confidence 99999999999999654 555555555556688899999999987644 477778888889999999887542 2
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
+.+|+|+|++++. ..+++..+ .++||.|+||+.|+. ++++||+++ +++++++++++|+++++
T Consensus 295 -~~~g~f~~~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRls~~--~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 295 -ESAGNFVLAEVGD---------ASAVAEAA-QERGVIVRDCTSFGL--PECIRITCG--TREETERAVEVLNEVLA 356 (357)
T ss_pred -CCCCCEEEEECCC---------HHHHHHHH-HHCCEEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence 3566899998851 22466665 678999999999863 579999997 57899999999999875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=379.35 Aligned_cols=346 Identities=17% Similarity=0.231 Sum_probs=268.3
Q ss_pred CceEEeecccc--c---cc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 36 SGIIQMGLAEN--Q---LS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 36 ~~~i~l~~~~n--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
+++|+|+.+.. + .| .+.+.+++.+.... .....|++..|.++||+++++++.+..+ ..+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~-----------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~ 92 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLET-----------ETTKNYLPIEGLAAYRQAVQELLFGADS--PALAA 92 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhccc-----------ccCCCcCCCCCCHHHHHHHHHHhcCCCC--ccccc
Confidence 46799999852 1 12 24566665553110 2345799999999999999999965432 23578
Q ss_pred CcE--EEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 110 NKL--VLTAGSTAANETLMFCL--ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 110 ~~i--~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
++| ++|+|+++++.++++++ ++|||+|++++|+|+.|...++.. |++++.+++...++|.+|++.+++.+...
T Consensus 93 ~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~~~~d~~~l~~~~~~~-- 169 (396)
T PRK09257 93 GRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAA-GLEVKTYPYYDAATKGLDFDAMLADLSQA-- 169 (396)
T ss_pred CeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHc-CCcEEEEeccccccCccCHHHHHHHHHhC--
Confidence 887 99999999999998766 589999999999999999999877 99999999843345889999999987641
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
.++..+++++|||||||.++|.+++++|+++|++++++||+||+|.++.++... ...++..+.. ..+++
T Consensus 170 -~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~---------~~~~v 238 (396)
T PRK09257 170 -PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEE-DAYGLRAFAA---------AGLEL 238 (396)
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHH-HHHHHHHHHh---------cCCcE
Confidence 123456677999999999999999999999999999999999999987654210 2234433322 23689
Q ss_pred EEEcCCCcCCCCCccEEEEEEe--cCHH-HHH---HHHHh--cccCCCChHHHHHHHHHcCCchh---hHHHHHHHHHHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYS--NNER-VVS---AATKM--SSFGLVSSQTQYLLSRMLSDKKF---TCNYMKENRKRL 334 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~--~~~~-~~~---~~~~~--~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~ 334 (464)
++++||||.|+++|+|+||+++ +++. +.+ .+... ..++.++.+.|.++..++.++.+ ..++++++++.+
T Consensus 239 i~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~ 318 (396)
T PRK09257 239 LVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERI 318 (396)
T ss_pred EEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999989999999973 3322 222 22222 23344678899999999998753 257788899999
Q ss_pred HHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe
Q 037587 335 RKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF 410 (464)
Q Consensus 335 ~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~ 410 (464)
+++++.+.+.|++.+ +.+..++||||+|++++. +++.++++++||.+.|. + ||++
T Consensus 319 ~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------~~~~~l~~~~~V~~~p~--------~--ri~~ 377 (396)
T PRK09257 319 KAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTP-----------EQVDRLREEFGVYAVGS--------G--RINV 377 (396)
T ss_pred HHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCH-----------HHHHHHHHcCCEEEcCC--------C--eEEE
Confidence 999999999999874 667789999999999862 35677888999999862 2 9999
Q ss_pred ecCCHHHHHHHHHHHHHHH
Q 037587 411 ANITEETLQVALQRIKVFA 429 (464)
Q Consensus 411 ~~~~~e~l~~~l~~l~~~l 429 (464)
+.++++++++++++|++++
T Consensus 378 ~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 378 AGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred eeCCHHHHHHHHHHHHhhC
Confidence 8779999999999998753
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=373.22 Aligned_cols=342 Identities=19% Similarity=0.243 Sum_probs=266.0
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
.+++|+.|+|+++ ++.+.+++.+.... ......|++ .|.++||++||+++++.++.++.+++++|++|
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it 97 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQ----------GIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVG 97 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhh----------cccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEc
Confidence 4799999999985 46677766653111 012357876 68899999999999877654566899999999
Q ss_pred CChHHHHHHHHHHhcCCCC-eEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 116 AGSTAANETLMFCLADPGD-AFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd-~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
+|+++++..++.+++.+|| .|++++|+|+.|...++.. |++++.+++++ ++|.+|++++++++++. ...++++|+
T Consensus 98 ~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~~--~~~~~k~i~ 173 (374)
T PRK02610 98 NGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTL-GIPVVRVGRDP-ETFEIDLAAAQSAIEQT--QNPPVRVVF 173 (374)
T ss_pred CChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEecCCc-ccCCCCHHHHHHHHHhh--cCCCceEEE
Confidence 9999999988888888886 8999999999999988877 99999999864 45899999999988631 113789999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.+++++++++| ++++||+||+|.++.+ . . .+..+ . ..+++++++||||+
T Consensus 174 l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~--~--~--~~~~~-~---------~~~~~ivi~SfSK~ 235 (374)
T PRK02610 174 VVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQ--T--T--LVGEL-A---------QHPNWVILRTFSKA 235 (374)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCc--c--c--hHHHH-h---------cCCCEEEEEecchh
Confidence 999999999999999999999876 4899999999998532 2 1 11112 2 22578899999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL 353 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 353 (464)
||+||+|+||++++ +.+.+.+.+....+.++.++|.++..++.+. +.+.+.++..+++ ++.+.+.|+++ ++.+.
T Consensus 236 ~g~~GlRiG~~v~~-~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~ 310 (374)
T PRK02610 236 FRLAAHRVGYAIGH-PELIAVLEKVRLPYNLPSFSQLAAQLALEHR---QELLAAIPEILQE-RDRLYQALQELPQLRVW 310 (374)
T ss_pred ccCcccceeeeecC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHH-HHHHHHHHHhCCCcEeC
Confidence 99999999999984 4565666665555668899999999999864 3445555555554 67788888876 66654
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+++|+|+|++++...+ ..+++..+ .++||.|+++ ++++||+++. ++++++++++|++++++..
T Consensus 311 -p~~g~f~~~~l~~~~~------~~~~~~~l-~~~gi~v~~~-------~~~lRls~~~--~~~~~~~l~~l~~~l~~~~ 373 (374)
T PRK02610 311 -PSAANFLYLRLSQDAA------LAALHQAL-KAQGTLVRHT-------GGGLRITIGT--PEENQRTLERLQAALTQLE 373 (374)
T ss_pred -CCcceEEEEeCCCCCC------HHHHHHHH-HHCCEEEEeC-------CCeEEEeCCC--HHHHHHHHHHHHHHHhhcC
Confidence 5677899999985321 23466665 5789999864 4689999984 6789999999999987654
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=375.11 Aligned_cols=327 Identities=19% Similarity=0.281 Sum_probs=261.4
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+.|+|+++ ++.+.+++... .....|++. +..+||++||++++ +++++|+
T Consensus 51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~--------------~~~~~Yp~~-~~~~lr~~ia~~~~--------~~~~~I~ 107 (380)
T PLN03026 51 PEDIVKLDANENPYGPPPEVLEALGNM--------------KFPYVYPDP-ESRRLRAALAEDSG--------LESENIL 107 (380)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHhh--------------HhhccCCCC-CHHHHHHHHHHHhC--------cChhhEE
Confidence 458899999999985 46666655431 223568765 57999999999986 6889999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++.++++ ++|.+|++.+++.+.. .++++|
T Consensus 108 ~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~~~~-----~~~~~v 179 (380)
T PLN03026 108 VGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVN-GAEVIKVPRT--PDFSLDVPRIVEAVET-----HKPKLL 179 (380)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEeecC--CCCCcCHHHHHHHHhc-----cCCcEE
Confidence 9999999999999999999999999999999888777766 9999999985 3578999999988732 278999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.+++.+++++|++.+ +++|+||+|.++.+.+. ...... ..+++++++||||
T Consensus 180 ~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~~------~~~~~~---------~~~~viv~~SfSK 240 (380)
T PLN03026 180 FLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQES------RMKWVK---------KYDNLIVLRTFSK 240 (380)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCcc------hHHHHH---------hCCCEEEEecchH
Confidence 9999999999999999999998753 89999999998654221 112222 2378999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-Cee
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRC 352 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 352 (464)
.||++|+|+||+++++ .+.+.+.+....+.++.++|.++.++|.+.++ +++.++.++++++.+.+.|++++ +.+
T Consensus 241 ~~glaGlRiGy~~~~~-~~i~~l~~~~~~~~~~~~~q~aa~~aL~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~ 315 (380)
T PLN03026 241 RAGLAGLRVGYGAFPL-SIIEYLWRAKQPYNVSVAAEVAACAALSNPKY----LEDVKNALVEERERLFGLLKEVPFLEP 315 (380)
T ss_pred hhcCccccceeeecCH-HHHHHHHHhcCCCCCCHHHHHHHHHHhhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 9999999999999955 45556666666677899999999999987554 67788889999999999999885 455
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
. +.+++|+|++++... ...+++..|+ ++||.|+++..++ .++++|||++ ++++++.++++|+++
T Consensus 316 ~-p~~~~f~~~~~~~~~------~~~~~~~~l~-~~gI~v~~~~~~~--~~~~lRis~~--~~~~~~~l~~al~~~ 379 (380)
T PLN03026 316 Y-PSDANFILCRVTSGR------DAKKLKEDLA-KMGVMVRHYNSKE--LKGYIRVSVG--KPEHTDALMEALKQL 379 (380)
T ss_pred C-CCCCeEEEEECCCCC------CHHHHHHHHH-HCCeEEEECCCCC--CCCEEEEecC--CHHHHHHHHHHHHHh
Confidence 4 456679999987421 1235777776 7899999987632 4679999998 577888888888653
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=378.20 Aligned_cols=353 Identities=15% Similarity=0.207 Sum_probs=267.9
Q ss_pred CceEEeeccccc-c-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 36 SGIIQMGLAENQ-L-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
.++|+|+.+..+ . ++..+.+.+.+..... . .......|++..|.++||+++|+++.+..+ ..+++++|+
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~-~------~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~~v~ 99 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKII-A------EKNLDKEYLPIEGLQSFIEAAQKLLFGEAS--YALAEKRIA 99 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHh-c------cccCCCCCCCCCCCHHHHHHHHHHhcCCCc--cccccCeEE
Confidence 467999998742 2 2222233333321110 0 013457899999999999999999864322 346888998
Q ss_pred --EeCChHHHHHHHHH---HhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCC
Q 037587 114 --LTAGSTAANETLMF---CLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNL 188 (464)
Q Consensus 114 --it~G~~~al~~~~~---~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 188 (464)
.|.|+++++..++. +++++||.|++++|+|+.|...++.. |++++.+++.++++|.+|++.+++.+++. .+
T Consensus 100 ~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~l~~~~~~~~d~~~l~~~~~~~---~~ 175 (404)
T PTZ00376 100 TVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSA-GLNVKEYRYYDPKTKGLDFDGMLEDLRTA---PN 175 (404)
T ss_pred EeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCceeeccccCcccCCcCHHHHHHHHHhC---CC
Confidence 59999999988875 67899999999999999999998877 99999999854556899999999988642 12
Q ss_pred ceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEE
Q 037587 189 KVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIV 268 (464)
Q Consensus 189 ~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l 268 (464)
+.++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.|.+......++..+.. ..++++++
T Consensus 176 ~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~---------~~~~vi~i 246 (404)
T PTZ00376 176 GSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAE---------RGVEFLVA 246 (404)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHh---------cCCcEEEE
Confidence 456778899999999999999999999999999999999999999877531001223333322 23589999
Q ss_pred cCCCcCCCCCccEEEEE---EecCHH---HHHHHHHh-cc-cCCCChHHHHHHHHHcCCchhhH---HHHHHHHHHHHHH
Q 037587 269 YSLSKDFSMPGFRVGMI---YSNNER---VVSAATKM-SS-FGLVSSQTQYLLSRMLSDKKFTC---NYMKENRKRLRKR 337 (464)
Q Consensus 269 ~S~SK~~g~~GlRiG~l---~~~~~~---~~~~~~~~-~~-~~~~s~~~q~~~~~~l~~~~~~~---~~~~~~~~~~~~~ 337 (464)
+||||+||++|+|+||+ +++++. +...+.+. .. +...++++|.++..+++++++.+ +++++.++.++++
T Consensus 247 ~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 326 (404)
T PTZ00376 247 QSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNM 326 (404)
T ss_pred EeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 344332 22222222 22 33456789999999999875533 3356667889999
Q ss_pred HHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecC
Q 037587 338 KEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANI 413 (464)
Q Consensus 338 ~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~ 413 (464)
++.+.+.|++.+ +.+.++++|||+|++++. +++.+|++++||.+.|| + ||+++.+
T Consensus 327 r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~-----------~~~~~L~~~~~v~v~p~--------~--Ris~~~~ 385 (404)
T PTZ00376 327 RQLLYDELKALGSPGDWEHIINQIGMFSFTGLTK-----------EQVERLIEKYHIYLLDN--------G--RISVAGL 385 (404)
T ss_pred HHHHHHHHHhcCCCCcccccccCceEEEecCCCH-----------HHHHHHHHhCCEeecCC--------C--eEEEecc
Confidence 999999999875 455678999999998852 57888998889999987 1 9999867
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 037587 414 TEETLQVALQRIKVFAQS 431 (464)
Q Consensus 414 ~~e~l~~~l~~l~~~l~~ 431 (464)
++++++.++++|++++..
T Consensus 386 ~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 386 TSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred CHHhHHHHHHHHHHHHhc
Confidence 899999999999998753
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=373.63 Aligned_cols=335 Identities=18% Similarity=0.261 Sum_probs=270.5
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.|+|++. ++.+.+++.+.. ....+|++..| .+||+++|++++ +++++|+
T Consensus 35 ~~~~i~l~~~~~~~~~~~~~~~al~~~~-------------~~~~~Y~~~~g-~~lr~~ia~~~~--------~~~~~i~ 92 (371)
T PRK05166 35 VPRIAKLGSNENPLGPSPAVRRAFADIA-------------ELLRLYPDPQG-RALREAIAARTG--------VPADRII 92 (371)
T ss_pred CcceEEcCCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCCCcH-HHHHHHHHHHhC--------cCHHHEE
Confidence 457899999999974 566776665531 23567998888 599999999985 6789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|+++.|+|+.+...++.. |++++.+++++ ++.+|++++++.+++ +++++
T Consensus 93 ~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~l~~~~~~------~~~~v 163 (371)
T PRK05166 93 LGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMM-GARVERVTVTP--DLGFDLDALCAAVAR------APRML 163 (371)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCeEEEeecCC--CCCCCHHHHHHhhhc------CCCEE
Confidence 9999999999999999999999999999999888877766 99999999864 467899999988865 67889
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|++ +++||+||+|.++.++.. ..+......+ ..+++++++||||
T Consensus 164 ~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~---~~~~~~~~~~--------~~~~vi~i~SfSK 231 (371)
T PRK05166 164 MFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDD---YPSALTLLKA--------RGLPWIVLRTFSK 231 (371)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcC---cccHHHHHhh--------cCCCEEEEeechH
Confidence 999999999999999999999999875 889999999998765332 2343333321 2358999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL 353 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 353 (464)
.||++|+|+||++++++.+.+.+.+....+.++.++|.++.+++.+.++ +++.++.++++++.+.+.|++.|+.+.
T Consensus 232 ~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~ 307 (371)
T PRK05166 232 AYGLAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDEEH----LAKGVALALAERERLKKELAEMGYRIA 307 (371)
T ss_pred hhhcchhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCcCeeC
Confidence 9999999999988767777776666666667889999888888876544 677778888899999999999898876
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
++ +|+|+|++++. ...+++..++ ++||.|+||..++ .++++||+++ ++++.+.+++.|+.+++
T Consensus 308 p~-~g~fl~~~~~~--------~~~~l~~~l~-~~gi~v~p~~~~~--~~~~iRi~~~--~~~~~~~l~~~l~~i~~ 370 (371)
T PRK05166 308 PS-RANFLFFDARR--------PASAVAEALL-RQGVIVKPWKQPG--FETFIRVSIG--SPEENDHFVAALDKVLE 370 (371)
T ss_pred CC-cCCEEEEeCCC--------CHHHHHHHHH-HCCeEEecCCCCC--CCCeEEEEcC--CHHHHHHHHHHHHHHhh
Confidence 54 46799999763 1235777776 5699999997654 4789999998 47778888888877643
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=372.73 Aligned_cols=337 Identities=23% Similarity=0.395 Sum_probs=264.5
Q ss_pred CCCCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC-CC
Q 037587 31 QLHNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK-FD 108 (464)
Q Consensus 31 ~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~ 108 (464)
...++.++|+|+.+.+..+ ++.+.+++.+. .....|+++.|.++||+++|+++.+.++ ++ ++
T Consensus 22 ~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~--------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~~--~~~~~ 85 (364)
T PRK07865 22 AAAHPDGIVDLSVGTPVDPVPPVIQEALAAA--------------ADAPGYPTTAGTPELREAIVGWLARRRG--VTGLD 85 (364)
T ss_pred HHhcCCCEEEcCCCCCCCCCCHHHHHHHHHH--------------HhhCCCCCccCCHHHHHHHHHHHHHHcC--CCCCC
Confidence 3345567899999976554 35666666542 1224799989999999999999998766 44 67
Q ss_pred CCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC
Q 037587 109 PNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
+++|++|+|+++++..++.++ +++||.|++++|+|+.+...+... |++++.++. ++++..
T Consensus 86 ~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~---------~~~l~~--------- 146 (364)
T PRK07865 86 PAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLA-GATVVRADS---------LTELGP--------- 146 (364)
T ss_pred cccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhc-CCEEEecCC---------hhhCCc---------
Confidence 999999999999999998888 799999999999999998888876 999888741 233322
Q ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
.++++|+++|||||||.++|.+++++|+++|+++|++||+||+|.++.+.+. . .+... ... .+...+++++
T Consensus 147 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~-~~~~~--~~~----~~~~~~~~i~ 217 (364)
T PRK07865 147 QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE--P-VSILD--PRV----CGGDHTGLLA 217 (364)
T ss_pred ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC--C-Ccccc--ccc----cCCccceEEE
Confidence 2788999999999999999999999999999999999999999998766543 1 22111 100 0012368999
Q ss_pred EcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 345 (464)
++||||.||++|+|+||++++++ +.+.+.... ..+.++++.|.++..++.+.+ ++++.++.++++++.+.+.|
T Consensus 218 ~~S~SK~~~~~GlRiG~i~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L 292 (364)
T PRK07865 218 VHSLSKQSNLAGYRAGFVAGDPA-LVAELLEVRKHAGMMVPAPVQAAMVAALGDDA----HVREQRERYARRRAVLRPAL 292 (364)
T ss_pred EeechhccCCCceeeEEEecCHH-HHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998544 444444332 234578899999999998744 46777888999999999999
Q ss_pred HhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 037587 346 KVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRI 425 (464)
Q Consensus 346 ~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 425 (464)
++.|+.+..+++|+|+|++++.. ..+++..+ .++||.|.||..|+...++++||+++. +++++++++++|
T Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~l-~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~~~~~~l 362 (364)
T PRK07865 293 EAAGFRVDHSEAGLYLWATRGED--------CWDTVAWL-AERGILVAPGDFYGPAGAQHVRVALTA-TDERIAAAVERL 362 (364)
T ss_pred HHcCCcccCCCccEEEEEeCCCC--------HHHHHHHH-HHCCEEEeCccccCcCCCCEEEEEecC-CHHHHHHHHHHh
Confidence 99998888889999999987421 12344444 578999999998876567899999985 789999999988
Q ss_pred H
Q 037587 426 K 426 (464)
Q Consensus 426 ~ 426 (464)
+
T Consensus 363 ~ 363 (364)
T PRK07865 363 A 363 (364)
T ss_pred h
Confidence 5
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=367.36 Aligned_cols=336 Identities=22% Similarity=0.376 Sum_probs=263.6
Q ss_pred CCCCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC-CC
Q 037587 31 QLHNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK-FD 108 (464)
Q Consensus 31 ~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~ 108 (464)
...++.++|+|+.+.+..+ ++.+.+++... .....|++..|.++||+++++++++.++ ++ ++
T Consensus 16 ~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~--------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~ 79 (357)
T TIGR03539 16 AASHPDGIVDLSVGTPVDPVPPLIRAALAAA--------------ADAPGYPQTWGTPELREAIVDWLERRRG--VPGLD 79 (357)
T ss_pred hhhCCCCeEEccCCCCCCCCCHHHHHHHHHH--------------HhhCCCCcccCCHHHHHHHHHHHHHhcC--CCCCC
Confidence 3445667899999876554 35566665542 1235799999999999999999988766 44 78
Q ss_pred CCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC
Q 037587 109 PNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
+++|++|+|+++++..++.++ +++||.|++++|+|+.+...+... |++++.++ +++.+..
T Consensus 80 ~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~---------~~~~l~~--------- 140 (357)
T TIGR03539 80 PTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLA-GATPVAAD---------DPTELDP--------- 140 (357)
T ss_pred cCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhc-CCEEeccC---------ChhhcCc---------
Confidence 899999999999999998888 799999999999999998887766 99888764 2232221
Q ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
.++++|+++||+||||.++|.+++++|+++|+++|+++|+||+|.++.|.+. . .+. +.+.. .+...+++++
T Consensus 141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~-~~~--~~~~~----~~~~~~~vi~ 211 (357)
T TIGR03539 141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGR--P-VSI--LDPRV----CGGDHTGLLA 211 (357)
T ss_pred cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC--C-ccc--eeccc----CCCccccEEE
Confidence 2688999999999999999999999999999999999999999998766543 2 121 11100 0012368999
Q ss_pred EcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 345 (464)
++||||.||++|+|+||+++++ .+.+.+.+.. ..++++.+.|.++..++.+.. +++..+..++++++.+.+.|
T Consensus 212 ~~S~SK~~~~~G~R~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~L 286 (357)
T TIGR03539 212 VHSLSKRSNLAGYRAGFVAGDP-ALVAELLTVRKHAGLMVPAPVQAAMVAALGDDG----HVAEQKARYAARRAQLKPAL 286 (357)
T ss_pred EeccccccCCCceeEEEEecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999854 4544444333 234578899999999998643 46677888999999999999
Q ss_pred HhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 037587 346 KVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRI 425 (464)
Q Consensus 346 ~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 425 (464)
++.|+.+.++++|+|+|++++. ...++...+ .++||.|.||..|+...++++||+++. +++++++++++|
T Consensus 287 ~~~g~~~~~p~~~~~~~~~~~~--------~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~~~l 356 (357)
T TIGR03539 287 EKAGFRIDHSEAGLYLWATRGE--------DAWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAVARL 356 (357)
T ss_pred HHcCCCCcCCCccEEEEEECCC--------CHHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecC-CHHHHHHHHHhh
Confidence 9999988899999999999863 122455555 578999999998876557899999996 789999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=370.43 Aligned_cols=328 Identities=20% Similarity=0.283 Sum_probs=266.2
Q ss_pred ceEEeecccccc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
++|+|++|+|++ +++.+.+++.... ... .|.+..|.+++|+++|++++ +++++|++|
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~-------------~~~-~~~p~~g~~~lr~~ia~~~~--------~~~~~i~~t 87 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHL-------------DEL-ALYPDGYAPELRTKVAKHLG--------VDEEQLLFG 87 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHH-------------HHh-hcCCCCcHHHHHHHHHHHhC--------CCHHHEEEC
Confidence 689999999998 4566777665531 223 34445688999999999985 678999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEE
Q 037587 116 AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil 195 (464)
+|+++++..++.+++++||.|++++|+|+.+...+... |++++.++++ ++.+|++.+++.+.+ +++++++
T Consensus 88 ~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~-g~~~~~~~~~---~~~~d~~~l~~~~~~------~~~~v~i 157 (359)
T PRK03158 88 AGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIE-GAEVREVPLK---DGGHDLEAMLKAIDE------QTKIVWI 157 (359)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEEecC---CCCcCHHHHHHhcCC------CCCEEEE
Confidence 99999999999999999999999999999998888776 9999999986 356899999887653 7889999
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC
Q 037587 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF 275 (464)
Q Consensus 196 ~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~ 275 (464)
+|||||||.++|.+++.++++.|+ +++++|+||+|.++.+.+. . .+...+.+ ..+++++++||||.|
T Consensus 158 ~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~--~-~~~~~~~~---------~~~~vi~~~S~SK~~ 224 (359)
T PRK03158 158 CNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAED--Y-PDTLPLLE---------KYENLIVLRTFSKAY 224 (359)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcc--c-ccHHHHHH---------hcCCEEEEEechHhh
Confidence 999999999999999999998875 6999999999998766433 1 22223333 236899999999999
Q ss_pred CCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC
Q 037587 276 SMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS 355 (464)
Q Consensus 276 g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 355 (464)
|++|+|+||+++++ .+.+.+......+.+++++|.++..++.+.++ .++.++.++++++.+.+.|.+.|+.+.++
T Consensus 225 g~~GlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (359)
T PRK03158 225 GLAALRVGYGIASE-ELIEKLNIARPPFNTTRIAQYAAIAALEDQAF----LKECVEKNAEGLEQYYAFCKEYGLFYYPS 299 (359)
T ss_pred cCcchhhehhcCCH-HHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCeeCCC
Confidence 99999999999954 45555655555567899999999999987654 56666777888888999998888888766
Q ss_pred CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 356 NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 356 ~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
. |+|+|++++. ...+++..++ ++||.|+||..|+ .++++||+++ ++++++.++++|+++
T Consensus 300 ~-g~~i~~~~~~--------~~~~~~~~l~-~~gv~v~~g~~f~--~~~~iRi~~~--~~~~~~~l~~al~~~ 358 (359)
T PRK03158 300 Q-TNFIFVDTGR--------DANELFEALL-KKGYIVRSGAALG--FPTGVRITIG--LKEQNDKIIELLKEL 358 (359)
T ss_pred c-CcEEEEECCC--------CHHHHHHHHH-HCCeEEeeCCCCC--CCCeEEEecC--CHHHHHHHHHHHHHh
Confidence 5 5699999852 1235777776 5799999999986 3679999998 689999999999875
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=376.98 Aligned_cols=354 Identities=19% Similarity=0.268 Sum_probs=266.1
Q ss_pred ceEEeecccccccHH-HHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHH-HHHHHcCCCCCCCCC--cE
Q 037587 37 GIIQMGLAENQLSFD-LLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVK-LMARIRGNKVKFDPN--KL 112 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~-~~~~~~~~~~~~~~~--~i 112 (464)
++|+|+.++..++++ .+.++.... .. ..|+++.|..++++++++ ++++.++.. ..+++ +|
T Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~-------------~~--~~Y~~p~g~~~~~e~iv~~y~~~~~~~~-~~~~~~~~V 158 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFLYEMCDGI-------------IG--DNYPVPDRMLPHSEKIVHQYLIQEMCGN-KPPPGEFDL 158 (521)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHh-------------hc--CCCCCCCCCHHHHHHHHHHHHHhhccCC-CCCCCcCeE
Confidence 578999998888754 444433321 11 269877787888888885 666554321 12334 89
Q ss_pred EEeCChHHHHHHHHHH-----hcCCCCeEEEcCCCCCChhhhcccC-CCcEEEEEecCCCCC-----cccCHHHHHHHHH
Q 037587 113 VLTAGSTAANETLMFC-----LADPGDAFLLPTPYYPGFDRDLKWR-PGVEIVPIHCSSSNG-----FRITISALENAYQ 181 (464)
Q Consensus 113 ~it~G~~~al~~~~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~-~g~~~~~v~~~~~~~-----~~~d~~~l~~~i~ 181 (464)
++|+|+++++..++.+ ++.|||+|++++|+|+.|...+... .|++++.++++++++ |.+|.+++++++.
T Consensus 159 ~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~ 238 (521)
T TIGR03801 159 FAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD 238 (521)
T ss_pred EEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC
Confidence 9999999999999887 7899999999999999998876542 278888888865433 9999999988654
Q ss_pred HHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC--CeEEEEeccccccccCCCCCCccchhhhhhccCcCCCC
Q 037587 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK--RIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259 (464)
Q Consensus 182 ~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~--~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 259 (464)
+ ++|+|+++|||||||.++|.+++++|+++|+++ +++||+||+|.++.+ . +.++.+..
T Consensus 239 ~------~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~---~~sl~~~~--------- 298 (521)
T TIGR03801 239 P------SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--D---FRSLFAEL--------- 298 (521)
T ss_pred C------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--c---ccchhhhC---------
Confidence 3 899999999999999999999999999999986 899999999998543 2 24544432
Q ss_pred CCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHH------------HH------------------------HHhcc--
Q 037587 260 DLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVS------------AA------------------------TKMSS-- 301 (464)
Q Consensus 260 ~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~------------~~------------------------~~~~~-- 301 (464)
.+++++++||||.||++|||+||++++++.+.+ .+ ++...
T Consensus 299 --~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~ 376 (521)
T TIGR03801 299 --PYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNH 376 (521)
T ss_pred --CCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhc
Confidence 268999999999999999999999997653211 11 11111
Q ss_pred cCCCChHHHH--H---HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc---CC
Q 037587 302 FGLVSSQTQY--L---LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS---NT 373 (464)
Q Consensus 302 ~~~~s~~~q~--~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~---~~ 373 (464)
...++++.|. + +.++++.. ..+.+++++.+++|++.+.+.| ...+...+++|++|+|++++..... ..
T Consensus 377 ~~g~s~p~Q~q~al~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~L-g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~ 452 (521)
T TIGR03801 377 TAGLSTPQQVQMALFSLFALMDKE---NAYKAETKDICRRREKLLFRGL-GLPLQEDPNDVAYYTLIDLEEWAEKNYGEE 452 (521)
T ss_pred cCCCCcHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhc-CCCCcCCCCCeEEEEEeehHHHHHHhcchH
Confidence 1234566665 3 44555432 4578889999999999999888 2223345789999999999853210 00
Q ss_pred -------hhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 374 -------FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 374 -------~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
...+.+++.+|++++||.+.||..|+.. .+++|||++..+++++.++.++|+++++++.
T Consensus 453 f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~~~~~ 518 (521)
T TIGR03801 453 FSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKILDEYY 518 (521)
T ss_pred HHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 0134579999999999999999999863 5689999987789999999999999997764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=369.61 Aligned_cols=285 Identities=21% Similarity=0.399 Sum_probs=232.0
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCChhhhcccCC
Q 037587 76 ELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-DPGDAFLLPTPYYPGFDRDLKWRP 154 (464)
Q Consensus 76 ~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~~ 154 (464)
....|++..|.++||++||+++++.+| +.+++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...+...
T Consensus 99 ~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~- 175 (407)
T PLN02368 99 GLGAYSDSRGLPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLL- 175 (407)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHc-
Confidence 356899999999999999999988766 55789999999999999999999987 79999999999999999998877
Q ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 155 GVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 155 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
|++++.++++++++|.+|++.+++.+++....+.++++++++|||||||.++|.+++++|+++|++++++||+||+|.++
T Consensus 176 g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l 255 (407)
T PLN02368 176 GGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQN 255 (407)
T ss_pred CCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 99999999987778999999999998753333347899999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEe--cCHHHHHHHHHhc-ccCCCChHHH
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYS--NNERVVSAATKMS-SFGLVSSQTQ 310 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~--~~~~~~~~~~~~~-~~~~~s~~~q 310 (464)
.|++.. .+.++.++..++.. ..+..+++++++||||+| |++|||+||+++ .++.+.+.+.+.. ..++++.++|
T Consensus 256 ~y~~~~-~~~s~~~~~~~~~~--~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q 332 (407)
T PLN02368 256 IYQDER-PFISAKKVLMDMGP--PISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQ 332 (407)
T ss_pred ccCCCC-CcccHHHHHhhhcc--cccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHH
Confidence 886521 34465554322200 000135899999999998 899999999984 2444555454443 3456788999
Q ss_pred HHHHHHcCCch----hh---HHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecC
Q 037587 311 YLLSRMLSDKK----FT---CNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMR 366 (464)
Q Consensus 311 ~~~~~~l~~~~----~~---~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~ 366 (464)
.++..+++++. .. .+..++.++.+++|++.+.+.|.++ |+.+.+|+|+||+|++++
T Consensus 333 ~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 333 IFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 99999998542 11 2333556889999999999999997 999999999999997664
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=368.12 Aligned_cols=320 Identities=20% Similarity=0.350 Sum_probs=258.7
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
.+.|+|+.|+|+++++.. + . .....+||+... .+|+++++++++ +++++|++|
T Consensus 28 ~~~~~l~~Nenp~~~~~~---~-~--------------~~~~~~Yp~~~~-~~l~~~~a~~~g--------~~~~~I~~~ 80 (351)
T PRK01688 28 NGDVWLNANEYPTAVEFQ---L-T--------------QQTLNRYPECQP-KAVIENYAAYAG--------VKPEQVLVS 80 (351)
T ss_pred CCceEecCCCCCCCCChh---h-c--------------ccccccCCCCCh-HHHHHHHHHHhC--------CCHHHEEEc
Confidence 356999999999976421 1 1 134678988754 899999999986 789999999
Q ss_pred CChHHHHHHHHHHhcCCC-CeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 116 AGSTAANETLMFCLADPG-DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
+|+++++.+++.+++++| |.|+++.|+|+.|...++.. |++++.+++++ +|.+|++.+++++ + ++++|+
T Consensus 81 ~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~-G~~~~~v~~~~--~~~~d~~~l~~~~-~------~~~lv~ 150 (351)
T PRK01688 81 RGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVEIRTVPTLD--NWQLDLPAIADNL-D------GVKVVY 150 (351)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHc-CCEEEEeecCC--CCCCCHHHHHHhc-c------CCcEEE
Confidence 999999999999999997 89999999999998888876 99999999863 5889999998876 2 688999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.+++.+++++|++.|++ +.+||+||+|.++. .. .+...++. ..+++++++||||+
T Consensus 151 l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~--~~----~s~~~~~~---------~~~n~iv~rSfSK~ 214 (351)
T PRK01688 151 VCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFC--PQ----ASLAGWLA---------EYPHLVILRTLSKA 214 (351)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcC--CC----CChHHHHh---------hCCCEEEEecchHh
Confidence 99999999999999999999999976 67899999999853 22 23334444 23789999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-e
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR-C 352 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~ 352 (464)
||++|+|+||++++ +.+.+.+++....+.++.++|.++..+|.+.. .+++++.++.+.++++++.+.|+++ ++. +
T Consensus 215 ~glaGlRiGy~i~~-~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 291 (351)
T PRK01688 215 FALAGLRCGFTLAN-EEVINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWLIAALKEIPCVEQV 291 (351)
T ss_pred hcCHHHHHhHHhCC-HHHHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 99999999999984 55666677777777788888988888888643 2456777788888899999999988 664 5
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRI 425 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 425 (464)
.++. ++|+|++++. ..++...|+ ++||.|+++..|. ..++|+||+++ ++++++.++++|
T Consensus 292 ~ps~-~nfi~~~~~~---------~~~l~~~L~-~~gi~vr~~~~~~-~~~~~iRis~~--~~~e~~~l~~al 350 (351)
T PRK01688 292 FDSE-TNYILARFTA---------SSAVFKSLW-DQGIILRDQNKQP-GLSNCLRITIG--TREECQRVIDAL 350 (351)
T ss_pred CCCC-CcEEEEEcCC---------HHHHHHHHH-HCCeEEEECCCcC-CCCCeEEEeCC--CHHHHHHHHHhh
Confidence 5555 5699998862 124666665 6799999877653 23679999998 589999999887
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=363.18 Aligned_cols=327 Identities=19% Similarity=0.296 Sum_probs=260.0
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
.+.++++.|+|+++++.. . ...+.+|+++. ..+||++||++++ +++++|++|
T Consensus 31 ~~~~~~~~ne~~~~~~~~-----~--------------~~~~~~Y~~~~-~~~lr~~ia~~~~--------~~~~~I~~t 82 (364)
T PRK04781 31 QGDVWLNANESAWANPAD-----P--------------DASTRRYPDPQ-PPGLRSALAALYG--------CAPEQLLIG 82 (364)
T ss_pred CCCEEeeCCCCCCCCChh-----h--------------cchhccCCCCC-HHHHHHHHHHHhC--------cChHHEEEe
Confidence 356999999999865321 0 12356898775 5999999999985 689999999
Q ss_pred CChHHHHHHHHHHhcCCC-CeEEEcCCCCCChhhhcccCCCcEEEEEecC-CCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 116 AGSTAANETLMFCLADPG-DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+++++.+++.+++.+| |.|++++|+|+.|...++.. |++++.++++ ++++|.+|++++.+.+.. +++++|
T Consensus 83 ~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-----~~~~lv 156 (364)
T PRK04781 83 RGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQ-NAPLVEVPLVDGADGFHADVPAIVAAALA-----SNAKLV 156 (364)
T ss_pred CCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEEecCCCccCCCcCHHHHHHHHhc-----cCCeEE
Confidence 999999999999999999 79999999999887777766 9999999985 345678899888665432 378999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.+++.++++++++.|+ ++++||+||+|.++.+. . +...+.. ..+++++++||||
T Consensus 157 ~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~-~-----~~~~~~~---------~~~~vi~~~SfSK 220 (364)
T PRK04781 157 FLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDV-P-----SAVGLLA---------RYDNLAVLRTLSK 220 (364)
T ss_pred EEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCC-c-----chHHHHh---------hCCCEEEEecChh
Confidence 99999999999999999999999986 47899999999986532 1 2222333 2378999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR- 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~- 351 (464)
+||+||+|+||++++ +.+.+.+.+....+.+++++|.++..++.++.+ . +..+.++.++++++.+.+.|+++ |+.
T Consensus 221 ~~gl~GlRvGy~v~~-~~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~-~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 297 (364)
T PRK04781 221 AHALAAARIGSLIAN-AELIAVLRRCQAPYPVPTPCAALAEQALSAPAL-A-VTARRVAEVRAERERLHAALAQLPGVRR 297 (364)
T ss_pred hcccccceeeeeeCC-HHHHHHHHhccCCCCCCHHHHHHHHHHHhcccH-H-HHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 999999999999995 456676777776777899999999999988643 2 34444556788999999999988 664
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+. +.+|+|+|++++. ..++...+ .++||.|+||..|.. .++|+||+++ ++++++.++++|+++.
T Consensus 298 ~~-p~~g~f~~~~~~~---------~~~~~~~l-~~~gI~v~~~~~~~~-~~~~~Ris~~--~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 298 VY-PSQGNFLLVRFDD---------AEAAFQAL-LAAGVVVRDQRAAPR-LSDALRITLG--TPEQNDRVLAALQRTQ 361 (364)
T ss_pred EC-CCCCcEEEEEcCC---------HHHHHHHH-HHCCeEEeeCCCCCC-CCCeEEEeCC--CHHHHHHHHHHHHHHH
Confidence 44 4556899999862 12355554 578999999987753 4679999998 5889999999998754
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=363.04 Aligned_cols=345 Identities=23% Similarity=0.437 Sum_probs=277.1
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
..+++|+.+.+.++ ++.+.+++...... . ......|++..|.+++|+++++++++.++ ..+++++|++
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~------~---~~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i~~ 101 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEE------E---DPGLHGYMPNAGYPEVREAIAESLNRRFG--TPLTADHIVM 101 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhc------C---CcCcccCCCCCCCHHHHHHHHHHHHHHhC--CCCCcCcEEE
Confidence 46799998866554 46666666553211 0 11256798889999999999999998766 3578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++++++ +|.+|++++++.+++ ++++|+
T Consensus 102 t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~-g~~v~~v~~~~~-~~~~d~~~l~~~~~~------~~~~v~ 173 (394)
T PRK06836 102 TCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNH-GGKLVVVPTDTD-TFQPDLDALEAAITP------KTKAVI 173 (394)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEEecCCc-cCcCCHHHHHhhcCc------CceEEE
Confidence 999999999999999999999999999999998888766 999999998753 478999999998864 789999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhh------CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEE
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKS------KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIV 268 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~------~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l 268 (464)
+++||||||.++|.+++++|+++|++ |+++||+||+|.++.|++. ...++. . ..++++++
T Consensus 174 ~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~---~---------~~~~~i~~ 239 (394)
T PRK06836 174 INSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA--EVPYIF---K---------YYDNSIVV 239 (394)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC--CCCChH---H---------ccCcEEEE
Confidence 99999999999999999999999998 8999999999999877643 223322 2 22689999
Q ss_pred cCCCcCCCCCccEEEEEEecCHHHHHH---HHH---h---cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHH
Q 037587 269 YSLSKDFSMPGFRVGMIYSNNERVVSA---ATK---M---SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKE 339 (464)
Q Consensus 269 ~S~SK~~g~~GlRiG~l~~~~~~~~~~---~~~---~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 339 (464)
+||||.||+||+|+||+++++. +.+. ... . ..++.++++.|.++..++.+.. .+..++++++
T Consensus 240 ~S~SK~~~~pGlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~~r~ 310 (394)
T PRK06836 240 YSFSKSLSLPGERIGYIAVNPE-MEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV--------DVSIYKRNRD 310 (394)
T ss_pred ecchhhccCcceeeEEEecCHH-HhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH--------HHHHHHHHHH
Confidence 9999999999999999999654 3221 111 1 1224577889999999998742 2456777889
Q ss_pred HHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHH
Q 037587 340 MLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQ 419 (464)
Q Consensus 340 ~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 419 (464)
.+.+.|+++|+.+.++++|+|+|++++.. ...+++.. +.++||.|+||..|+. ++++||+++ .++++++
T Consensus 311 ~l~~~L~~~g~~~~~~~gg~~~~~~~~~~-------~~~~~~~~-l~~~gv~v~~g~~f~~--~~~iRi~~~-~~~~~~~ 379 (394)
T PRK06836 311 LLYDGLTELGFECVKPQGAFYLFPKSPEE-------DDVAFCEK-AKKHNLLLVPGSGFGC--PGYFRLSYC-VDTETIE 379 (394)
T ss_pred HHHHHHHhCCCEeecCCceEEEEEeCCCC-------CHHHHHHH-HHhCCEEEECchhcCC--CCeEEEEec-CCHHHHH
Confidence 99999999999999999999999998752 12346654 4678999999999863 579999998 5899999
Q ss_pred HHHHHHHHHHHhhC
Q 037587 420 VALQRIKVFAQSCN 433 (464)
Q Consensus 420 ~~l~~l~~~l~~~~ 433 (464)
+++++|+++++++.
T Consensus 380 ~~i~~l~~~l~~~~ 393 (394)
T PRK06836 380 RSLPAFEKLAKEYK 393 (394)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998765
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=363.85 Aligned_cols=337 Identities=20% Similarity=0.267 Sum_probs=268.4
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
..|+|+.|+|+++ ++.+.+++.+..... ......|++ .|.++||++||+++++.++ .++++++|++|
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~---------~~~~~~Y~~-~g~~~lr~aia~~~~~~~~--~~~~~~~I~it 94 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEA---------AAGLNRYPD-RDAVALRADLAAYLTAQTG--VGLTVENVWAA 94 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhh---------hhhhccCCC-CchHHHHHHHHHHhhhhcc--CCCChhhEEEC
Confidence 4699999999995 467777776642110 123567876 4789999999999988766 45789999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEE
Q 037587 116 AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil 195 (464)
+|+++++..++.+++++||.|+++.|+|+.|...+... |.+++.++.+ ++|.+|++.+++++.+ .+++++++
T Consensus 95 ~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~~~~~--~~~~~d~~~l~~~~~~-----~~~~~i~l 166 (368)
T PRK03317 95 NGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGT-HTEWVEGPRA--ADFTLDVDAAVAAIAE-----HRPDVVFL 166 (368)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhc-CCeeEEcccC--CCCCCCHHHHHHHHhc-----cCCCEEEE
Confidence 99999999999999999999999999999998888766 9998888764 4688999999998864 26788999
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC
Q 037587 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF 275 (464)
Q Consensus 196 ~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~ 275 (464)
+|||||||.+++.+++++|+++| ++++|+||+|.++.+.+. .+...+.+ ..+++++++||||+|
T Consensus 167 ~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~----~~~~~~~~---------~~~~~i~~~SfSK~~ 230 (368)
T PRK03317 167 TSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT----PSALTLLP---------EYPRLVVSRTMSKAF 230 (368)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC----cCHHHHHH---------hCCCEEEEEechhhh
Confidence 99999999999999999999877 689999999998655433 23333433 225899999999999
Q ss_pred CCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC
Q 037587 276 SMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS 355 (464)
Q Consensus 276 g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 355 (464)
|++|+|+||++++ +.+.+.+......+.+++++|.++.+++++.+. +.+.++.++++++.+.+.|++.|+.+.++
T Consensus 231 g~~GlRiG~~~~~-~~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 305 (368)
T PRK03317 231 AFAGGRLGYLAAA-PAVVDALRLVRLPYHLSAVTQAAARAALRHADE----LLASVAALRAERDRVVAWLRELGLRVAPS 305 (368)
T ss_pred ccchhhhhhhhCC-HHHHHHHHhcCCCCCCCHHHHHHHHHHhhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCEeCCC
Confidence 9999999999995 456566655555566889999999999986432 33445667888899999999999998889
Q ss_pred CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 356 NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 356 ~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
++++++|.+++. ..+++..++ ++||.|+++. .++++||+++ ++++++.++++|+++++.
T Consensus 306 ~~~~~~~~~~~~---------~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~--~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 306 DANFVLFGRFAD---------RHAVWQGLL-DRGVLIRDVG-----IPGWLRVTIG--TPEENDAFLAALAEVLAT 364 (368)
T ss_pred CCcEEEEeccCC---------HHHHHHHHH-HCCEEEEeCC-----CCCeEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 999888876531 124556554 6799998742 2579999998 578899999999988764
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=361.75 Aligned_cols=329 Identities=22% Similarity=0.252 Sum_probs=257.6
Q ss_pred cccccCCCCCCcHHHHHHHHHHHHHHcCCCCC-CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccC
Q 037587 75 RELALFQDYHGFPDAKKELVKLMARIRGNKVK-FDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR 153 (464)
Q Consensus 75 ~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~ 153 (464)
.....|+++.|.++||+++++++.+..+ ... .+.++|++|+|+++++.+++.+++++||.|++++|+|+.|...+...
T Consensus 35 ~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~ 113 (388)
T PRK08637 35 DEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTR 113 (388)
T ss_pred ccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHh
Confidence 3457899999999999999999875432 111 12368999999999999999999999999999999999998875432
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh-----CCeEEEEe
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS-----KRIHIVSD 228 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~-----~~~~lI~D 228 (464)
.|++++.+++.. +++.+|++.+++.++.. ..+..++++++|||||||.++|.+++++|+++|++ ++++||+|
T Consensus 114 ~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~--~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~D 190 (388)
T PRK08637 114 RGAEIVTYPIFD-EDGGFDTDALKEALQAA--YNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVD 190 (388)
T ss_pred cCCEEEEecccC-CCCcCCHHHHHHHHHhh--ccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 399999999842 23468999999988621 11244567888999999999999999999998875 89999999
Q ss_pred ccccccccCCCCCCccchh-hhhhccCcCCCCCCCCcE--EEEcCCCcCCCCCccEEEEEEecC-----HHHHHHHHH-h
Q 037587 229 EIYSGTVFDSPSSSFISIM-EAVMDRNIDESDDLWSRI--HIVYSLSKDFSMPGFRVGMIYSNN-----ERVVSAATK-M 299 (464)
Q Consensus 229 eay~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~v--i~l~S~SK~~g~~GlRiG~l~~~~-----~~~~~~~~~-~ 299 (464)
|+|.++.|++. ...++. .+.+ ..+++ ++++||||.|++||+|+||++++. +.+.+.+.+ .
T Consensus 191 e~Y~~l~~~~~--~~~~~~~~~~~---------~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~ 259 (388)
T PRK08637 191 DAYFGLFYEDS--YKESLFAALAN---------LHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKV 259 (388)
T ss_pred ccchhcccCCc--cchhhHHHhhc---------ccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHH
Confidence 99999877654 323332 2222 22564 445699999999999999998643 455444432 1
Q ss_pred -----cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccc
Q 037587 300 -----SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLV 370 (464)
Q Consensus 300 -----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~ 370 (464)
...+.+|.+.|.++..++.++.+ .+++++.+..++++++.+.+.|+.. ++.+.++++|+|+|++++.
T Consensus 260 ~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~--- 335 (388)
T PRK08637 260 KGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG--- 335 (388)
T ss_pred HHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh---
Confidence 13346789999999999998877 6777788888999999999988765 5788889999999999972
Q ss_pred cCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 371 SNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 371 ~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+..+++..+++++||.+.+. .++++||+++..+++++++++++|++++++.
T Consensus 336 ----~~~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 336 ----VDAEELRVHLLEKYGIGTIAL------NETDLRIAFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred ----HHHHHHHHHHhhhcceEEEec------cCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 123468888877889998742 2568999999878999999999999999865
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=359.26 Aligned_cols=326 Identities=19% Similarity=0.292 Sum_probs=258.6
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|||+.|+|+++ ++.+.+++.+.. .+...|+++.|..+||+++|++++ +++++|+
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~g~~~lr~aia~~~~--------~~~~~I~ 79 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARL-------------GDLAAYPSTEDERRARAAVAARHG--------RTPDEVL 79 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHh-------------hHhhcCCCccchHHHHHHHHHHhC--------cChhhEE
Confidence 457899999999885 566777776642 335679988899999999999985 6899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++.+++. +.+| .++++.|+|..+...++.. |++++.++++. +|.+|++.+. + +++++
T Consensus 80 it~Ga~~al~~~~~--l~~~-~viv~~P~y~~~~~~~~~~-G~~i~~v~~~~--~~~~d~~~l~----~------~~~~i 143 (349)
T PRK07908 80 LLAGAAEGFALLAR--LRPR-RAAVVHPSFTEPEAALRAA-GIPVHRVVLDP--PFRLDPAAVP----D------DADLV 143 (349)
T ss_pred ECCCHHHHHHHHHh--cCCC-eEEEeCCCChHHHHHHHHc-CCEEEeeccCc--ccCcChhHhc----c------CCCEE
Confidence 99999999999988 4664 5778899999998888776 99999999874 3778887543 2 67899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++.++ |+ ++.++|+||+|.++.. +. ..++... ..+++++++||||
T Consensus 144 ~l~np~NPTG~~~~~~~l~~l---~~-~~~~iIvDe~y~~~~~-~~---~~~l~~~-----------~~~~~i~i~S~SK 204 (349)
T PRK07908 144 VIGNPTNPTSVLHPAEQLLAL---RR-PGRILVVDEAFADAVP-GE---PESLAGD-----------DLPGVLVLRSLTK 204 (349)
T ss_pred EEcCCCCCCCCCcCHHHHHHH---Hh-cCCEEEEECcchhhcc-CC---ccccccc-----------cCCCEEEEeeccc
Confidence 999999999999998876555 44 4778888999998633 22 2333222 2367999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL 353 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 353 (464)
.||++|+|+||++++ +.+.+.+......+.++++.|.++..++.+.. .+++++.++.++++++.+.+.|+++|+++.
T Consensus 205 ~~~l~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 281 (349)
T PRK07908 205 TWSLAGLRVGYALGA-PDVLARLTRGRAHWPVGTLQLEAIAACCAPRA--VAEAAADAARLAADRAEMVAGLRAVGARVV 281 (349)
T ss_pred ccCCccceeeeeecC-HHHHHHHHhcCCCCCccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHHhCCcEec
Confidence 999999999999985 44555566555556678888888888877432 456788889999999999999998888888
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
++.+|+|+|++++. . +.+..+++++||.|+||..|+...+++|||+++ +++++++++++|++++..
T Consensus 282 ~p~~g~~~~~~~~~---------~-~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~~ 347 (349)
T PRK07908 282 DPAAAPFVLVRVPD---------A-ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILKA 347 (349)
T ss_pred cCCCceEEEEECCc---------H-HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHhc
Confidence 88889999999974 1 234445578899999999986545789999997 688999999999887653
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=362.70 Aligned_cols=326 Identities=18% Similarity=0.253 Sum_probs=261.2
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.|+|+++ ++.+.+++.+.. .....|++.. ..+||++|+++++ +++++|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~-~~~Lr~aia~~~~--------v~~e~I~i 100 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSA-------------ALSGRYDLEL-EDDLRTLFAAQEG--------LPADHVMA 100 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHH-------------HHhcCCCCch-HHHHHHHHHHHhC--------cChhhEEE
Confidence 57899999999985 566666665531 2234687664 7999999999875 78999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.+++++||+|++++|+|+.|...++.. |++++.+++++ +|.+|++.+++.. +++++++
T Consensus 101 t~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~-------~~~~~v~ 170 (370)
T PRK09105 101 YAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQ-GAPVAKVPLRA--DGAHDVKAMLAAD-------PNAGLIY 170 (370)
T ss_pred cCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEecCCC--CCCCCHHHHHhcC-------CCCCEEE
Confidence 999999999999999999999999999999998888877 99999999864 5778998887652 2678899
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.++++++++.++ +++++|+||+|.+ |... .+...+.+ ..+++++++||||+
T Consensus 171 l~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~--f~~~----~s~~~~~~---------~~~~vi~~~SfSK~ 234 (370)
T PRK09105 171 ICNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIH--FSDA----PSVVDLVA---------QRKDLIVLRTFSKL 234 (370)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHH--hccC----cchHHHHh---------hCCCEEEEecccHh
Confidence 9999999999999999999999764 5899999999986 4322 23333433 33789999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK 354 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 354 (464)
||++|+|+||+++++ .+.+.+... ..+.++.+.|.++..++.+.+ ++++.++.++++++.+.+.|+++|+++.+
T Consensus 235 ~g~~GlRiG~~v~~~-~~i~~l~~~-~~~~~~~~~~~aa~~~L~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~ 308 (370)
T PRK09105 235 YGMAGMRLGLAAARP-DLLAKLARF-GHNPLPVPAAAAGLASLRDPK----LVPQRRAENAAVREDTIAWLKKKGYKCTP 308 (370)
T ss_pred hcCCccceeeeecCH-HHHHHHHhc-CCCCcCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 999999999999954 455555555 445578888999888888744 47778888999999999999999999888
Q ss_pred CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 355 SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 355 ~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
+++++| +++++. +..+++..|+ ++||.| +..|. ..++|+||+++ +++++++++++|+++++
T Consensus 309 ~~~~f~-~~~~~~--------~~~~l~~~L~-~~gI~v--~~~~~-~~~~~~Ris~~--~~~~~~~l~~al~~~~~ 369 (370)
T PRK09105 309 SQANCF-MVDVKR--------PAKAVADAMA-KQGVFI--GRSWP-IWPNWVRVTVG--SEEEMAAFRSAFAKVMR 369 (370)
T ss_pred CCCcEE-EEeCCC--------CHHHHHHHHH-HCCcEE--ecCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHHhh
Confidence 888865 577752 1235777776 559998 33453 24689999998 57889999999988763
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-45 Score=366.90 Aligned_cols=356 Identities=19% Similarity=0.289 Sum_probs=262.5
Q ss_pred CceEEeecccccc-c--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 36 SGIIQMGLAENQL-S--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 36 ~~~i~l~~~~n~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
.++|+|+.+.+.. + .+.+.++++..... . ........|++..|.++||++||+++.+.+| +.+++++|
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~v~~~~I 100 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLAS------G-KLTEALGNYDGPQGKDELIEALAALLNERYG--WNISPQNI 100 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcC------c-ccccccccCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhE
Confidence 4679999876543 2 23455555442110 0 0012346799999999999999999988776 55789999
Q ss_pred EEeCChHHHHHHHHHHhcC-----CCCeEEE-cCCCCCChhhhcccC---CCcEEEEEecCCCC-CcccCHHHHHHHHHH
Q 037587 113 VLTAGSTAANETLMFCLAD-----PGDAFLL-PTPYYPGFDRDLKWR---PGVEIVPIHCSSSN-GFRITISALENAYQQ 182 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~-----~gd~Vlv-~~p~y~~~~~~~~~~---~g~~~~~v~~~~~~-~~~~d~~~l~~~i~~ 182 (464)
++|+|+++++.+++.+++. +||.|++ ++|+|+.|...+... .+..+..++++.++ +|.+|++.|+ +.
T Consensus 101 ~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~- 177 (416)
T PRK09440 101 ALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID- 177 (416)
T ss_pred EEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC-
Confidence 9999999999999999985 5899999 799999988754322 01222223333211 4778998886 22
Q ss_pred HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCC
Q 037587 183 AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (464)
.++++++++|||||||.++|.+++++|+++|++++++||+||+|.+. +... .+.+ ..+. ..
T Consensus 178 -----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~--~~~~---~~~~--------~~ 238 (416)
T PRK09440 178 -----EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPP-FPGI--IFSE---ATPL--------WN 238 (416)
T ss_pred -----CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCc--chhh---cCcc--------cc
Confidence 26789999999999999999999999999999999999999999753 1111 1111 1110 13
Q ss_pred CcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHH-HHHHHHHHHH
Q 037587 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKE-NRKRLRKRKE 339 (464)
Q Consensus 263 ~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~ 339 (464)
+++++++||||. ++||+|+||+++++ .+.+.+...... .+++.+.|.++..++.++++ .++..+ .+..++++++
T Consensus 239 ~~vI~~~SfSK~-~~pGlRiG~~i~~~-~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~ 315 (416)
T PRK09440 239 PNIILCMSLSKL-GLPGVRCGIVIADE-EIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQ 315 (416)
T ss_pred CCeEEEeccccc-CCCcceEEEEeCCH-HHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHH
Confidence 789999999996 89999999999955 455555444432 35788999999999999887 455544 6778888888
Q ss_pred HHHHHHHhC----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCC-------CCeEEE
Q 037587 340 MLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNE-------PGWFRI 408 (464)
Q Consensus 340 ~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~-------~~~~Ri 408 (464)
.+.+.|.+. ++.+.+|++|+|+|++++.... .+.+++..+ .++||.|+||+.|+... .+++||
T Consensus 316 ~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~~-----~~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRi 389 (416)
T PRK09440 316 LAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLPI-----TTEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRM 389 (416)
T ss_pred HHHHHHHHhcccCCeEEecCCCceEEEEECCCCCC-----CHHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEE
Confidence 888888764 4566788999999999985210 123466655 57899999999986421 358999
Q ss_pred EeecCCHHHHHHHHHHHHHHHHhh
Q 037587 409 CFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 409 s~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
+++. +++++++++++|++++++.
T Consensus 390 s~~~-~~~~l~~~i~~l~~~~~~~ 412 (416)
T PRK09440 390 NYVQ-DDEEIEKGIAILAEEVEKA 412 (416)
T ss_pred EecC-CHHHHHHHHHHHHHHHHHH
Confidence 9985 7999999999999998764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=360.74 Aligned_cols=334 Identities=16% Similarity=0.208 Sum_probs=265.6
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
..+|+|+.|+|+++ ++.+.+++.+.. .....|++. +..+||++||++++ +++++|++
T Consensus 32 ~~~~~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~Y~~~-~~~~Lr~~ia~~~~--------~~~~~I~i 89 (369)
T PRK08153 32 PFRARIGANESGFGPSPSVIAAMREAA-------------AEIWKYGDP-ENHDLRHALAAHHG--------VAPENIMV 89 (369)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCCC-ccHHHHHHHHHHhC--------CCHHHEEE
Confidence 35579999999986 456666665531 234578876 46999999999985 78899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.+++++||.|++++|+|+.+...+... |.+++.+|++.+ .+|++.+++.+.. .++++++
T Consensus 90 t~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~vp~~~~---~~~~~~l~~~~~~-----~~~~~i~ 160 (369)
T PRK08153 90 GEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAGF-GGRLVTVPYRDD---REDLDALLDAARR-----ENAPLVY 160 (369)
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHHHc-CCeEEEeeCCCC---CCCHHHHHHHhcc-----cCCcEEE
Confidence 999999999999999999999999999999998877766 999999998532 4688888776542 2688999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.+++++++++|++ +++||+||+|.++.+.+. +.+ +.. ..+++++++||||+
T Consensus 161 l~~P~NPtG~~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~---~~~---~~~---------~~~~~i~~~SfSK~ 224 (369)
T PRK08153 161 LANPDNPMGSWHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGA---APP---IDT---------DDPNVIRMRTFSKA 224 (369)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCccc---chh---hhh---------cCCCEEEEecchHh
Confidence 99999999999999999999998874 899999999998655332 122 211 23689999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK 354 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 354 (464)
||++|+|+||+++++ .+.+.+.+....+++++++|.++..++++.++ +++.++.++++++.+.+.|++.|+.+.+
T Consensus 225 ~g~~GlRiG~~v~~~-~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~~~~~L~~~g~~~~p 299 (369)
T PRK08153 225 YGLAGARVGYAIGAP-GTIKAFDKVRNHFGMNRIAQAAALAALKDQAY----LAEVVGKIAAARDRIAAIARANGLTPLP 299 (369)
T ss_pred ccCcchheeeeecCH-HHHHHHHHhhcCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCccCC
Confidence 999999999999954 45555555555667899999999999987544 6777888899999999999988887664
Q ss_pred CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe-CCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 355 SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS-PGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 355 ~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~-pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+++|+|++++... ....++++.++ ++||.|+ |+... .++++||+++ ++++++.++++|++++.+.+
T Consensus 300 -~~~~f~~~~~~~~~-----~~a~~l~~~l~-~~Gi~v~~p~~~~---~~~~iRis~~--~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 300 -SATNFVAIDCGRDG-----AFARAVLDGLI-ARDIFVRMPGVAP---LDRCIRVSCG--PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred -CcCcEEEEECCCCc-----ccHHHHHHHHH-HCCeEEeeCCCCC---CCCeEEEecC--CHHHHHHHHHHHHHHHHHhh
Confidence 56679999986210 11235666665 5799996 66421 3579999998 68999999999999987654
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-45 Score=359.65 Aligned_cols=329 Identities=20% Similarity=0.274 Sum_probs=263.4
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i 112 (464)
+.++|+|+.|+|+++ ++.+.+++.+... ...+..|++ .|..+||+++|++++ +.+ ++|
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~~I 84 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLA-----------EVALNRYPD-PRAAALKAALRAAMG--------VPAGADV 84 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhh-----------ccccccCCC-CCHHHHHHHHHHHhC--------cCCCCcE
Confidence 467899999999985 5667777665321 023567987 477999999999986 333 589
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||+|++++|+|..+...++.. |++++.+++++ +|.+|++.+++.+.+ .++++
T Consensus 85 ~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~--~~~~d~~~l~~~~~~-----~~~~~ 156 (356)
T PRK04870 85 LLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLA-GLEFVGVPLTA--DFTLDLPAMLAAIAE-----HRPAL 156 (356)
T ss_pred EEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHHHhhc-----CCCCE
Confidence 99999999999999999999999999999999998888776 99999999863 578999999998853 27899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|+++|||||||.++|.+++++|+++| +.++|+||+|.++.+ . .+.+ ... ..+++++++|||
T Consensus 157 v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~--~--~~~~---~~~---------~~~~vi~~~S~S 217 (356)
T PRK04870 157 VFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAG--D--SWLP---RLA---------RFPNLLVMRTVS 217 (356)
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcC--c--chHH---HHh---------hCCCEEEEecch
Confidence 99999999999999999999999998 678999999987532 2 1111 122 236899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR 351 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 351 (464)
| +|++|+|+||+++++ .+.+.+......+.++.++|.++..++++.++ +++.++.++++++.+.+.|+++ |+.
T Consensus 218 K-~~~~GlRiG~~i~~~-~~i~~~~~~~~~~~~~~~~q~~a~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~ 291 (356)
T PRK04870 218 K-LGLAGLRLGYLAGHP-AWIAELDKVRPPYNVNVLTQATALFALEHVDV----LDAQAAQLRAERTRLAAALAALPGVT 291 (356)
T ss_pred h-hhhHHHhhhhhhCCH-HHHHHHHHccCCCcCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 9 899999999999954 45555655555566888999998888876433 6667778889999999999987 887
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+.++ +|+|+|++++. ..+++.. +.++||.|+||..|+...++++||+++ +.++++.++++|++++
T Consensus 292 ~~~~-~~~~~~~~~~~---------~~~~~~~-l~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 292 VFPS-AANFILVRVPD---------AAAVFDG-LKTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFLAALKAAL 356 (356)
T ss_pred ECCC-CCeEEEEECCC---------HHHHHHH-HHHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHHHHHHHhC
Confidence 7654 45699999871 1235544 568899999999987555789999998 5889999999998753
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=354.83 Aligned_cols=348 Identities=18% Similarity=0.285 Sum_probs=271.3
Q ss_pred CCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 34 NPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
++.++|+|+.++|+++ ++.+.+++...... .....|++..|.+++|+++|++++ +++++|
T Consensus 26 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~--------~~~~~v 86 (380)
T PRK06225 26 KDKEMIWMGQNTNHLGPHEEVREAMIRCIEE-----------GEYCKYPPPEGFPELRELILKDLG--------LDDDEA 86 (380)
T ss_pred hcCCeEEccCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCcchHHHHHHHHHhcC--------CCCCcE
Confidence 3567899999999885 46666666654211 224578888899999999999985 678899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC-CCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
++|+|+++++..++++++.+||.|++++|+|..+...+... |++++.++++ .+++|.+|++.+++.+.+ +++
T Consensus 87 ~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~ 159 (380)
T PRK06225 87 LITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRF-GAEVIEVPIYSEECNYKLTPELVKENMDE------NTR 159 (380)
T ss_pred EEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHh-CceEEeeccccccCCccCCHHHHHhhcCC------Cce
Confidence 99999999999999999999999999999999887777766 9999999974 344688999999988754 788
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+++++|||||||.++|.+++++|+++|+++|+++|+||+|.++... . .....+ ..++++++.||
T Consensus 160 ~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~----~~~~~~-----------~~~~~i~~~s~ 223 (380)
T PRK06225 160 LIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFARE-H----TLAAEY-----------APEHTVTSYSF 223 (380)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhcc-C----Cchhhc-----------CCCCEEEEeec
Confidence 9999999999999999999999999999999999999999875322 1 122222 23689999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-G 349 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 349 (464)
||.||++|+|+||++++++ +.+.+.... ..++.+.++|.++..++... .++.++.++.++++++.+.+.|+++ |
T Consensus 224 SK~~g~~G~RiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 299 (380)
T PRK06225 224 SKIFGMAGLRIGAVVATPD-LIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLIKEAVDEIEG 299 (380)
T ss_pred hhhcCCccceeEEEecCHH-HHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999999654 555544432 23457788998888887653 3446666777778888888888874 5
Q ss_pred Cee-ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 350 IRC-LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 350 ~~~-~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
+.+ ..+.+|+|+|++++... ....+++..+. ++||.|+||..|+.. +++++|++++. +++++++++++|++
T Consensus 300 ~~~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~ 372 (380)
T PRK06225 300 VFLPVYPSHGNMMVIDISEAG-----IDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPD 372 (380)
T ss_pred CccccCCCCCeEEEEEccccc-----CCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHH
Confidence 432 23345678999986421 11235677765 779999999766532 35799999985 88999999999999
Q ss_pred HHHhhCc
Q 037587 428 FAQSCNP 434 (464)
Q Consensus 428 ~l~~~~~ 434 (464)
++++.+.
T Consensus 373 ~~~~~~~ 379 (380)
T PRK06225 373 VVETLRT 379 (380)
T ss_pred HHHHhhc
Confidence 9987653
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=354.07 Aligned_cols=326 Identities=19% Similarity=0.303 Sum_probs=257.9
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.|+|+++ ++.+.+++.+... .....|++. |..+||++||++++ +++++|++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~------------~~~~~y~~~-~~~~lr~aia~~~~--------~~~~~I~i 82 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALG------------DDLRLYPDP-NADALRQAIAAYYG--------LDPEQVFV 82 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhh------------hhhhcCCCC-cHHHHHHHHHHHhC--------CCHHHEEE
Confidence 57899999999986 5677777765321 234678766 55999999999985 68999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++.+++++++++||.|++++|+|+.|...++.. |++++.+++++ +|.+|++++++ ..++++
T Consensus 83 t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~----------~~~~v~ 149 (353)
T PRK05387 83 GNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAGLY-GIPYEEIPLDD--DFSIDVEDYLR----------PNGGII 149 (353)
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHc-CCEEEEeecCC--CCCCCHHHHHh----------cCCEEE
Confidence 999999999999999999999999999999888777766 99999999863 57889998863 346789
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.+++++|+++++ ++++|+||+|.+ |.+. ...+ +.. ..+++++++||||.
T Consensus 150 ~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~--~~~~--~~~~---~~~---------~~~~~i~~~S~SK~ 211 (353)
T PRK05387 150 FPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVD--FGGE--SAIP---LID---------RYPNLLVVQTFSKS 211 (353)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCcccc--cCCc--chHH---HHh---------hCCCEEEEEehhHh
Confidence 9999999999999999999998754 899999999986 4433 2122 222 22679999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcc---cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSS---FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
||++|+|+||++++ +.+.+.+..... .++++.+.|.++..++.+.++ .++.++.++++++.+.+.|++.|+.
T Consensus 212 ~~~~GlR~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~ 286 (353)
T PRK05387 212 RSLAGLRVGFAIGH-PELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAY----FEETRAKVIATRERLVEELEALGFE 286 (353)
T ss_pred hcchhhhceeeecC-HHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 99999999999985 445555554432 245788999999999987554 5667788888999999999999988
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++ +++|+|++++.. +..++++.+ .++||.|++.... ..++++||+++ ++++++.++++|++++.+
T Consensus 287 ~~~~-~~~~~~~~~~~~-------~~~~~~~~l-~~~gi~v~~~~~~--~~~~~iRis~~--~~~~~~~~~~~L~~~~~~ 353 (353)
T PRK05387 287 VLPS-KANFVFARHPSH-------DAAELAAKL-RERGIIVRHFNKP--RIDQFLRITIG--TDEEMEALVDALKEILAK 353 (353)
T ss_pred ECCC-cCcEEEEECCCC-------CHHHHHHHH-HHCCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHHHhhC
Confidence 7654 557999998731 123567776 4679999854321 23679999998 579999999999988753
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=358.56 Aligned_cols=318 Identities=16% Similarity=0.219 Sum_probs=244.9
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc-----EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc
Q 037587 76 ELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK-----LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL 150 (464)
Q Consensus 76 ~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~-----i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~ 150 (464)
....|++..|.++||+++++++.+... ...++++ +++|+|+.+ +...+..++.|||+|++++|+|+.|...+
T Consensus 83 ~~~~Y~~~~G~~~LR~aia~~~~~~~~--~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~ 159 (423)
T PLN02397 83 RNKEYLPIEGLAEFNKLSAKLAYGADS--PAIKENRVATVQCLSGTGSLR-LGAEFLARFYPGSTIYIPNPTWGNHHNIF 159 (423)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHcCCCC--chhhcCeeEeeecccchHHHH-HHHHHHHHhCCCCEEEEeCCCchhHHHHH
Confidence 345799999999999999999864322 1122233 344555544 33344455569999999999999999999
Q ss_pred ccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecc
Q 037587 151 KWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEI 230 (464)
Q Consensus 151 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Dea 230 (464)
+.. |++++.+++...++|.+|++.+++.+.+. .++++++++++||||||.++|.+++++|+++|++++++||+||+
T Consensus 160 ~~~-g~~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~ 235 (423)
T PLN02397 160 RDA-GVPVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSA 235 (423)
T ss_pred HHc-CCeEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecc
Confidence 877 99999999843345889999998887642 23678888899999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEE--ecCHHHHH----HHHHhc--cc
Q 037587 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIY--SNNERVVS----AATKMS--SF 302 (464)
Q Consensus 231 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~--~~~~~~~~----~~~~~~--~~ 302 (464)
|.++.|++....+.++..+.. ..+++++++||||+|+++|||+||++ ++++.+.. .+.... ..
T Consensus 236 Y~~l~~~~~~~~~~~~~~~~~---------~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~ 306 (423)
T PLN02397 236 YQGFASGDLDADAQSVRMFVE---------DGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMY 306 (423)
T ss_pred cCCccCCchhhhhHHHHHHHh---------cCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhccc
Confidence 999877541002234333322 22579999999999999999999985 43433322 232322 23
Q ss_pred CCCChHHHHHHHHHcCCchhhHHH---HHHHHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChh
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNY---MKENRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFE 375 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~ 375 (464)
.+++.+.|.++..+|+++++.+.+ ++++++.++++++.+.+.|+++| +.+..|+||||+|++++.
T Consensus 307 ~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~~-------- 378 (423)
T PLN02397 307 SNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNK-------- 378 (423)
T ss_pred CCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCCH--------
Confidence 346778999999999987543333 67889999999999999999987 787889999999998851
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 376 AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
+++.+|++++||.|.+ .+ ||+++.++++.+++++++|+++++
T Consensus 379 ---~~~~~Ll~~~~V~v~~--------~~--Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 379 ---EQVDRMTKEYHIYMTR--------DG--RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred ---HHHHHHHHhCCEEECC--------CC--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 4889999999999962 23 999987799999999999999985
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=355.94 Aligned_cols=319 Identities=18% Similarity=0.321 Sum_probs=253.9
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
.++|+|+.|+|+++++.. + . .....+|++.. .++||+++|++++ +++++|++|
T Consensus 31 ~~~~~l~~ne~~~~~~~~---~-~--------------~~~~~~Yp~~~-~~~Lr~aia~~~~--------~~~~~I~it 83 (354)
T PRK04635 31 RGDIWINANESPFNNEYK---L-D--------------LARLNRYPECQ-PPELINAYSAYAG--------VAPEQILTS 83 (354)
T ss_pred CCcEEeeCCCCCCCCChh---h-h--------------hHHhccCCCCC-HHHHHHHHHHHhC--------cCHHHEEEe
Confidence 456999999999976521 1 1 13356898874 7999999999975 789999999
Q ss_pred CChHHHHHHHHHHhcCCC-CeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 116 AGSTAANETLMFCLADPG-DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
+|++++|.+++++++++| |.|+++.|+|+.|...++.. |++++.+|++. +|.+|++.++. + . ++++|+
T Consensus 84 ~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~-g~~v~~v~~~~--~~~~~~~~l~~-~-~------~~~li~ 152 (354)
T PRK04635 84 RGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETF-NVGVKALPLTA--DYQLPLDYIEQ-L-D------GAKLVF 152 (354)
T ss_pred CCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEEecCC--CCCCCHHHHHh-c-c------CCCEEE
Confidence 999999999999999999 89999999999988877766 99999999863 57788888763 2 2 789999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.++++++++.|+ +++||+||+|.++. .. .+...+.. ..+++++++||||+
T Consensus 153 i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~--~~----~s~~~~~~---------~~~~~iv~~S~SK~ 215 (354)
T PRK04635 153 ICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFC--PE----YSVADLLA---------SYPNLVVLRTLSKA 215 (354)
T ss_pred EeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhc--cC----cchHHHHh---------hCCCEEEEechHHH
Confidence 9999999999999999999999876 48999999999753 22 23333433 23789999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCL 353 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~ 353 (464)
||++|+|+||++++ +.+.+.+......++++.+.|.++.+++.+..+ +++++.++.++++++.+.+.|++++ +.+.
T Consensus 216 ~~l~GlRlG~~i~~-~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 292 (354)
T PRK04635 216 FALAGARCGFTLAN-EELIEILMRVIAPYPVPLPVSEIATQALSEAGL--ARMKFQVLDLNAQGARLQAALSMYGGAKVL 292 (354)
T ss_pred hhhhHHHHhhhhCC-HHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEC
Confidence 99999999999995 445565555555566788889888888876542 3466777888999999999999885 7888
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
++++ .|+|++++. ..++.. ++.++||.|+++..+ ..++++|||++ ++++++.++++|++
T Consensus 293 ~~~g-~f~~~~~~~---------~~~~~~-~l~~~gv~v~~~~~~--~~~~~lRis~~--~~e~~~~l~~al~~ 351 (354)
T PRK04635 293 EGNG-NYVLAKFDD---------VDAVFK-ALWDAGIVARAYKDP--RLANCIRFSFS--NRAETDKLIGLIRN 351 (354)
T ss_pred CCCC-cEEEEECCC---------HHHHHH-HHHHCCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHH
Confidence 7765 589998862 113544 456789999976543 24679999998 68999999998865
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=352.57 Aligned_cols=311 Identities=16% Similarity=0.204 Sum_probs=245.2
Q ss_pred CCceEEeecccccccHH-HHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC-CCcE
Q 037587 35 PSGIIQMGLAENQLSFD-LLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD-PNKL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~~~i 112 (464)
+.++|+|+.|+||++++ .... . ..+.+||+.. .+||+++|++++ +. +++|
T Consensus 23 ~~~~i~ls~Nenp~~~~~~~~~---~---------------~~~~~Yp~~~--~~L~~~ia~~~~--------~~~~~~I 74 (339)
T PRK06959 23 YDAWLDLSTGINPHGYPVPPVP---A---------------DAWRRLPEDD--DGLAACAARYYG--------APDAAHV 74 (339)
T ss_pred hhhhceeccCCCCCCCCCCCCC---H---------------HHHHhCCCch--HHHHHHHHHHhC--------CCCcccE
Confidence 45789999999998654 1110 0 1245698753 899999999986 44 5899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|++++|..+.. ++++|+ |+++.|+|+.|...++.. |++++.++++. +.+. + .+++
T Consensus 75 ~i~~Gs~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~~-g~~~~~v~~~~--------~~~~----~------~~~~ 133 (339)
T PRK06959 75 LPVAGSQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFARH-GHRVVPLDEAA--------DTLP----A------ALTH 133 (339)
T ss_pred EECcCHHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHHHC-CCEEEeecccc--------hhcc----c------cCCE
Confidence 999999999997765 567876 889999999999998877 99999987642 2221 1 4568
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
+++||||||||.++|.++++++++.|.+++.++|+||+|.++.+ . .++..+. ..+++++++|||
T Consensus 134 v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~--~----~s~~~~~----------~~~~vi~l~SfS 197 (339)
T PRK06959 134 LIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLP--A----ASLAAHT----------DRPGLVVLRSVG 197 (339)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCC--c----ccchhcc----------CCCCEEEEecCh
Confidence 99999999999999999999999999888999999999998532 1 2332232 126799999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 352 (464)
|+||++|+|+||++++ +.+.+.+.+....+.++.++|.++.++|++.++ .++.++.++++++++.+.|+++|+++
T Consensus 198 K~~gl~GlRiGy~v~~-~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~ 272 (339)
T PRK06959 198 KFFGLAGVRAGFVLAA-PALLAALRDALGAWTVSGPARHAVRAAFADAAW----QAAMRERLAADGARLAALLRAHGFAV 272 (339)
T ss_pred hhcCCcchheEEEecC-HHHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 9999999999999995 556666777766777899999999999998665 56778899999999999999998877
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
. .+++|+|++++. ..++...++ ++||.|+.. + ..+++||+++. ++++++.++++|+++++..
T Consensus 273 ~--~~~~f~~~~~~~---------~~~l~~~l~-~~GI~vr~~---~--~~~~lRisi~~-~~~e~~~l~~al~~~~~~~ 334 (339)
T PRK06959 273 H--ATPLFSWTDDPR---------AAALHAALA-RRGIWTRYF---A--PPPSVRFGLPA-DEAEWQRLEDALAECVPTL 334 (339)
T ss_pred c--CcceEEEEeCCC---------HHHHHHHHH-hCCeEEEEC---C--CCCeEEEECCC-CHHHHHHHHHHHHHHHHHH
Confidence 6 356899998762 124666654 679999853 2 24689999953 6789999999999887765
Q ss_pred C
Q 037587 433 N 433 (464)
Q Consensus 433 ~ 433 (464)
.
T Consensus 335 ~ 335 (339)
T PRK06959 335 A 335 (339)
T ss_pred h
Confidence 4
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=353.98 Aligned_cols=334 Identities=22% Similarity=0.292 Sum_probs=268.9
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.|+|+++ ++.+.+++.+.. .....|++..+ .+||+++|++++ +++++|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 88 (367)
T PRK02731 31 IADIIKLASNENPLGPSPKAIEAIRAAA-------------DELHRYPDGSG-FELKAALAEKFG--------VDPERII 88 (367)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHH-------------HhhcCCCCCcH-HHHHHHHHHHhC--------cCHHHEE
Confidence 457899999999885 455666665531 23467887654 899999999985 6789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|..+...+... |++++.++.+ ++.+|++.+++.+.+ ++++|
T Consensus 89 ~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~---~~~~~~~~l~~~~~~------~~~~v 158 (367)
T PRK02731 89 LGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAV-GAKPVEVPAK---DYGHDLDAMLAAVTP------RTRLV 158 (367)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHc-CCeEEEeccc---CCCCCHHHHHHHhCC------CCcEE
Confidence 9999999999999999999999999999998887776666 9999999873 577899999988753 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.+++.++++++++.|+ +++++|+||+|.++.+.+. ...++ ...+ ..+++++++||||
T Consensus 159 ~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~--~~~~~-~~~~---------~~~~~i~~~S~SK 225 (367)
T PRK02731 159 FIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKD--YEDGL-ELVA---------KFPNVVVTRTFSK 225 (367)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcC--cccHH-HHHh---------hcCCEEEEeeehH
Confidence 99999999999999999999999875 6999999999998766443 22222 2222 2368999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL 353 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 353 (464)
.||++|+|+||++++ +.+.+.+.+....+..++++|.++..++++.. ++++.++.++++++.+.+.|++.|+.+.
T Consensus 226 ~~g~~G~RiG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 300 (367)
T PRK02731 226 AYGLAGLRVGYGIAP-PEIIDALNRVRQPFNVNSLALAAAVAALDDDA----FVEKSRALNAEGMAWLTEFLAELGLEYI 300 (367)
T ss_pred hhcCcccceeeeeCC-HHHHHHHHHccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCccC
Confidence 999999999999995 45556666655556678899999999998744 4677788888899999999999898877
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
++. |+|+|++++...+ ..+++..|. ++||.|+|+..|+ .++++||+++ +.++++.++++|+++++
T Consensus 301 ~~~-g~~~~i~~~~~~~------~~~~~~~L~-~~gI~v~~~~~~~--~~~~iRis~~--~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 301 PSV-GNFILVDFDDGKD------AAEAYQALL-KRGVIVRPVAGYG--LPNALRITIG--TEEENRRFLAALKEFLA 365 (367)
T ss_pred CCC-ceEEEEECCCCCC------HHHHHHHHH-HCCEEEEeCCCCC--CCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence 544 5799999854221 235667665 6799999998875 3679999998 58899999999998875
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=344.71 Aligned_cols=323 Identities=18% Similarity=0.290 Sum_probs=248.4
Q ss_pred CCCCCCCCCceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC
Q 037587 28 PYDQLHNPSGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK 106 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~ 106 (464)
.|.....+.++|+|+.|+|++++ +.+.+++.+... ......|++. |.++||+++|+++++..
T Consensus 11 ~~~~~~~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~-----------~~~~~~Y~~~-~~~~Lr~aia~~~~~~~----- 73 (335)
T PRK14808 11 AYPYETEKRDRTYLALNENPFPFPEDLVDEVFRRLN-----------SDTLRIYYDS-PDEELIEKILSYLDTDF----- 73 (335)
T ss_pred CcCCCCCCCceeEecCCCCCCCCCHHHHHHHHHHhh-----------hhhhhcCCCC-ChHHHHHHHHHHhCCCC-----
Confidence 34444455788999999999964 556666555311 1234558765 78999999999997531
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
+++++|++|+|++++|..++.++ |.|++++|+|+.|...++.. |++++.+++++ ++.++... +.
T Consensus 74 ~~~~~i~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~----~~----- 137 (335)
T PRK14808 74 LSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAV-GAKFLEVPLTK--DLRIPEVN----VG----- 137 (335)
T ss_pred CCcceEEEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHHHHHHc-CCeEEEecCCC--cCCCChhH----cc-----
Confidence 68999999999999999999887 67999999999999999887 99999999874 34444221 11
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
+.++++++|||||||.++|.+++++|+ +++++||+||+|.++ .+. .+.+ ++. ..++++
T Consensus 138 --~~~~i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f--~~~--~~~~---~~~---------~~~~vi 195 (335)
T PRK14808 138 --EGDVVFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEF--HGE--SYVD---LLK---------KYENLA 195 (335)
T ss_pred --CCCEEEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhh--cCC--chHH---HHH---------hCCCEE
Confidence 458899999999999999999998886 479999999999984 322 2222 223 226899
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
+++||||+||++|+|+||+++++ .+.+.+.+....+.++.++|.++..++++.++ ..+.++.+.++++.+.+.|+
T Consensus 196 ~~~S~SK~~~l~GlRvG~~v~~~-~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~ 270 (335)
T PRK14808 196 VIRTFSKAFSLAAQRIGYVVSSE-KFIDAYNRVRLPFNVSYVSQMFAKVALDHREI----FEERTKFIVEERERMKSALR 270 (335)
T ss_pred EEEechhhccCcccceEEEEeCH-HHHHHHHHhcCCCCCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999955 45566666665566889999999888876443 55566677777899999999
Q ss_pred hCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 037587 347 VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426 (464)
Q Consensus 347 ~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 426 (464)
+.|+++.+++|+ |+|+.++.. ...++...+ .++||.|+. | .+++||+++ +.++++.+++.|+
T Consensus 271 ~~g~~~~~~~g~-f~~~~l~~~-------~~~~~~~~l-~~~Gi~V~~---~----~~~~Risi~--~~~~~~~~~~~l~ 332 (335)
T PRK14808 271 EMGYRITDSRGN-FVFIFMEKE-------EKERLLEHL-RAKNIAVRS---F----REGVRITIG--KREENDMILKELE 332 (335)
T ss_pred HCCCEECCCCCe-EEEEeCCCc-------cHHHHHHHH-HHCCeEEEE---C----CCCeEEecC--CHHHHHHHHHHHH
Confidence 999988888765 889998731 112455554 578999994 3 257999998 5899999999987
Q ss_pred HH
Q 037587 427 VF 428 (464)
Q Consensus 427 ~~ 428 (464)
.+
T Consensus 333 ~~ 334 (335)
T PRK14808 333 VF 334 (335)
T ss_pred hh
Confidence 54
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=338.51 Aligned_cols=308 Identities=19% Similarity=0.277 Sum_probs=237.0
Q ss_pred CCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 30 DQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 30 ~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
.-+.++.++|+|++|+|+++++.+.+++.+.. .....||. ...||++++++++
T Consensus 2 ~~~~~~~~~i~l~~~~np~~p~~~~~a~~~~~-------------~~~~~yp~---~~~l~~~ia~~~~----------- 54 (311)
T PRK08354 2 HGGIREEGLIDFSASVNPYPPEWLDEMFERAK-------------EISGRYTY---YEWLEEEFSKLFG----------- 54 (311)
T ss_pred CCCCCccceeEecCCCCCCCCHHHHHHHHHHH-------------HHhhcCCC---hHHHHHHHHHHHC-----------
Confidence 44566788999999999998777777766531 22446764 3789999999874
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
++|++|+|+++++..++..+ .+||.|++++|+|+.|...++.. |++++.++ +|++.+++.++ +
T Consensus 55 ~~I~vt~G~~~al~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~~~--------~d~~~l~~~~~-------~ 117 (311)
T PRK08354 55 EPIVITAGITEALYLIGILA-LRDRKVIIPRHTYGEYERVARFF-AARIIKGP--------NDPEKLEELVE-------R 117 (311)
T ss_pred CCEEECCCHHHHHHHHHHhh-CCCCeEEEeCCCcHHHHHHHHHc-CCEEeecC--------CCHHHHHHhhc-------C
Confidence 37999999999999888554 48999999999999999998877 99997654 46788877654 4
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
.++++++|||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. . . ..+++++++
T Consensus 118 ~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~--~-~----------------~~~~vi~~~ 178 (311)
T PRK08354 118 NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE--S-P----------------EGENIIKLR 178 (311)
T ss_pred CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc--c-c----------------CCCcEEEEe
Confidence 56799999999999999999999999999999999999999998766432 1 1 127899999
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG 349 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 349 (464)
||||+||+||+|+||+++ +.+.++....++.++...+.++..++.+. + +++.+.++.+.++++.+.+.+
T Consensus 179 S~SK~~~l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~l---- 247 (311)
T PRK08354 179 TFTKSYGLPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIEDD-F--EHLRKTMPLIWREKERFEKAL---- 247 (311)
T ss_pred ccHhhcCCccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHhH-H--HHHHHHHHHHHHHHHHHHHhc----
Confidence 999999999999999998 34455566666667788888888877742 2 344555565666655554443
Q ss_pred CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 350 IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 350 ~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
..++++++|+ ++++. ..+++..+ .++||.|+||..|+ .++|+||+++ .+++.++++++|+++
T Consensus 248 --~~~~~~~~~~-~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~--~~~~iRi~~~--~~~~~~~l~~al~~~ 309 (311)
T PRK08354 248 --YVKSDANFFI-KDVGD---------AEKFVEFL-KRNGILVRDCTSFG--LPGYIRFSVR--DREENEKLIRALREW 309 (311)
T ss_pred --CCCCCCcEEE-EECCC---------HHHHHHHH-HHCCeEEEecccCC--CCCeEEEEeC--CHHHHHHHHHHHHHh
Confidence 2356777554 66542 12466665 57799999999996 3689999998 467778888877764
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=346.63 Aligned_cols=338 Identities=19% Similarity=0.287 Sum_probs=264.2
Q ss_pred cCCCCCCCCCCceEEeecccccc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 26 NNPYDQLHNPSGIIQMGLAENQL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 26 ~~~y~~~~~~~~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
-..|.++.+++++|+|+.|++++ +++.+.+++.+.. .....|++ .|..++|+++|++++
T Consensus 12 ~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~-~g~~~lr~~ia~~~~------ 71 (352)
T PRK03321 12 IPAYVPGKTVPGAIKLSSNETPFGPLPSVRAAIARAA-------------AGVNRYPD-MGAVELRAALAEHLG------ 71 (352)
T ss_pred cCCCCCCCCcccceeccCCCCCCCCCHHHHHHHHHHH-------------HhcCcCCC-CcHHHHHHHHHHHhC------
Confidence 34477776667899999999988 4566777766531 23456864 688999999999986
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
+++++|++|+|+++++..++.+++++||.|+++.|+|..|...++.. |++++.+++++ ++.+|++.+++.+++
T Consensus 72 --~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~l~~~~~~-- 144 (352)
T PRK03321 72 --VPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQVA-GATPVQVPLTP--DHTHDLDAMAAAITD-- 144 (352)
T ss_pred --cCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHHc-CCEEEEccCCC--CCCCCHHHHHHhhcc--
Confidence 67899999999999999999999999999999999998887777766 99999999864 357899999988754
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
++++|+++|||||||.++|.+++.++++.+ ++++++|+||+|.++.+.+. ...+ ..... ..++
T Consensus 145 ----~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~--~~~~-~~~~~---------~~~~ 207 (352)
T PRK03321 145 ----RTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDD--VPDG-LELVR---------DHPN 207 (352)
T ss_pred ----CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcC--CCcH-HHHHh---------hCCC
Confidence 788999999999999999999999999876 46999999999998766543 2122 22222 2368
Q ss_pred EEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (464)
+++++||||.||++|+|+||++++ +.+.+.+.+....+.++.++|.++.+++...+. +.+.. +.+.++++.+.+.
T Consensus 208 vi~~~S~SK~~g~~GlRiG~~v~~-~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~~~---~~~~~-~~~~~~r~~~~~~ 282 (352)
T PRK03321 208 VVVLRTFSKAYGLAGLRVGYAVGH-PEVIAALRKVAVPFSVNSLAQAAAIASLAAEDE---LLERV-DAVVAERDRVRAA 282 (352)
T ss_pred EEEEecchHHhhhHHHhhhhhcCC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH---HHHHH-HHHHHHHHHHHHH
Confidence 999999999999999999999995 556666666655567899999988888875332 33333 3344556788999
Q ss_pred HHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHH
Q 037587 345 LKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQR 424 (464)
Q Consensus 345 l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~ 424 (464)
|++.|+.+.++ +|+|+|++++.. ..+++..+ +++||.|++ |+ ..++||+++ ++++++.++++
T Consensus 283 L~~~~~~~~~~-~g~~i~i~l~~~--------~~~~~~~l-~~~gI~v~~---~~---~~~iRi~~~--~~~~~~~~~~a 344 (352)
T PRK03321 283 LRAAGWTVPPS-QANFVWLPLGER--------TADFAAAA-AEAGVVVRP---FA---GEGVRVTIG--APEENDAFLRA 344 (352)
T ss_pred HHHCCCccCCC-CCCEEEEeCCCC--------HHHHHHHH-HHCCEEEEc---cC---CCcEEEeeC--CHHHHHHHHHH
Confidence 99888876554 567999998521 23466665 578999987 32 346999997 68999999999
Q ss_pred HHHHHH
Q 037587 425 IKVFAQ 430 (464)
Q Consensus 425 l~~~l~ 430 (464)
|++++.
T Consensus 345 l~~~~~ 350 (352)
T PRK03321 345 ARAWRA 350 (352)
T ss_pred HHHHhc
Confidence 998754
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=340.54 Aligned_cols=326 Identities=19% Similarity=0.327 Sum_probs=253.3
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
..++|+.|+|+++ ++.+.+++.+... ......|++.. ..+||+++|++++ +++++|++|
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~-----------~~~~~~y~~~~-~~~lr~~ia~~~~--------~~~~~i~it 82 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVK-----------SSQVNIYPDPT-AEKLREELARYCS--------VVPTNIFVG 82 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhh-----------cCcccCCCCcc-HHHHHHHHHHHhC--------CCcccEEEe
Confidence 3489999999985 4666666655311 12346787654 6999999999975 688999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEE
Q 037587 116 AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil 195 (464)
+|+++++..++.+++++||.|++++|+|+.+...++.. |++++.+++++ +|.+|++.+++.+.+ .++++|++
T Consensus 83 ~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~~~-----~~~k~v~l 154 (351)
T PRK14807 83 NGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIA-GAVEIPVKLKE--DYTYDVGSFIKVIEK-----YQPKLVFL 154 (351)
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEeecCC--CCCCCHHHHHHHhhc-----cCCCEEEE
Confidence 99999999999999999999999999999888877766 99999999863 577899999998853 27899999
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC
Q 037587 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF 275 (464)
Q Consensus 196 ~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~ 275 (464)
+|||||||.+++.++++++++ +++.++|+||+|.++ + +. ...+ ... ..+++++++||||.|
T Consensus 155 ~~p~NPtG~~~~~~~l~~l~~---~~~~~~ivDe~y~~~-~-~~--~~~~---~~~---------~~~~vi~~~S~SK~~ 215 (351)
T PRK14807 155 CNPNNPTGSVIEREDIIKIIE---KSRGIVVVDEAYFEF-Y-GN--TIVD---VIN---------EFENLIVLRTLSKAF 215 (351)
T ss_pred eCCCCCCCCCCCHHHHHHHHH---hCCCEEEEeCcchhh-c-cc--chHH---Hhh---------hCCCEEEEecchHhc
Confidence 999999999999988888776 446679999999874 3 32 2222 222 236899999999999
Q ss_pred CCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec
Q 037587 276 SMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK 354 (464)
Q Consensus 276 g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 354 (464)
|++|+|+||++++ +.+.+.+......+.++.++|.++..++++. + +++.++.++++++.+.+.|.+. |+.+.+
T Consensus 216 ~~~GlRiG~~v~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~----~~~~~~~~~~~r~~l~~~l~~~~g~~~~~ 289 (351)
T PRK14807 216 GLAGLRVGYAVAN-ENILKYLNLVKSPYNINSLSQVIALKVLRTG-V----LKERVNYILNERERLIKELSKIPGIKVYP 289 (351)
T ss_pred ccchhceeeeecC-HHHHHHHHHccCCCCcCHHHHHHHHHHHhHH-H----HHHHHHHHHHHHHHHHHHHHhCCCcEECc
Confidence 9999999999984 5566666666656668899999999999863 3 4445556677888899999876 888766
Q ss_pred CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 355 SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 355 ~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
++ |+|+|++++. ..+++..+ .++||.|+++..+. ..++++||+++ ++++.+.+++.|++++
T Consensus 290 ~~-~~~~~i~~~~---------~~~~~~~l-~~~gV~v~~~~~~~-~~~~~iRis~~--~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 290 SK-TNFILVKFKD---------ADYVYQGL-LERGILVRDFSKVE-GLEGALRITVS--SCEANDYLINGLKELL 350 (351)
T ss_pred CC-ccEEEEEcCC---------HHHHHHHH-HHCCEEEEECCCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHhh
Confidence 55 5699999862 12355555 46799999865432 24679999998 4788888998887754
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=340.15 Aligned_cols=328 Identities=16% Similarity=0.266 Sum_probs=249.4
Q ss_pred hcCCCCCCCCCCceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 25 ENNPYDQLHNPSGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 25 ~~~~y~~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.-.+|..... .++|+|+.|+|++++ +.+.+++.+.... .....|++ .|.++||+++|++++
T Consensus 8 ~~~~~~~~~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~-~g~~~lr~~ia~~~~----- 69 (337)
T PRK03967 8 SFKPYRVVEG-NYRIWLDKNENPFDLPEELKEEIFEELKR-----------VPFNRYPH-ITSDPLREAIAEFYG----- 69 (337)
T ss_pred hcCCCCCCCC-CceEEecCCCCCCCCCHHHHHHHHHHhhc-----------CccccCCC-CCHHHHHHHHHHHhC-----
Confidence 3344533322 367999999999853 5555555442110 23567875 588999999999996
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHH
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQA 183 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 183 (464)
+++++|++|+|+++++..++.++ +||.|+++.|+|+.|...+... |++++.++++. +|.+|++.+++.+.
T Consensus 70 ---~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~~-- 139 (337)
T PRK03967 70 ---LDAENIAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYSFYAKLN-GIPVIDVPLKE--DFTIDGERIAEKAK-- 139 (337)
T ss_pred ---cCcceEEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHHHc-CCeEEEeecCC--CCCcCHHHHHHhcc--
Confidence 68999999999999999998876 7999999999999887777766 99999999863 57899999887542
Q ss_pred hhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCC
Q 037587 184 QTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS 263 (464)
Q Consensus 184 ~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (464)
++++++++|||||||.+++.+++.+++ ++++++|+||+|.++. .. .+.+ +.. ..+
T Consensus 140 -----~~~~v~~~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~~--~~--~~~~---~~~---------~~~ 194 (337)
T PRK03967 140 -----NASAVFICSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEFS--GK--SLIG---LID---------EYP 194 (337)
T ss_pred -----CCCEEEEeCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhhc--cc--chHH---HHh---------hCC
Confidence 678899999999999999988877765 3699999999999853 22 2122 222 226
Q ss_pred cEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 264 RIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 264 ~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
++++++||||.||++|+|+||++++ +.+.+.+.+....++++.++|.++..++++.++ ..+.++.+.++++.+.+
T Consensus 195 ~vi~l~S~SK~~~l~GlRiG~iv~~-~~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~ 269 (337)
T PRK03967 195 NLILLRTFSKAFGLAGIRAGYAIAN-EEIIDALYRIKPPFSLNILTMKIVRLALDHYDL----IEERIDYIIKERERVRR 269 (337)
T ss_pred CEEEEecchHhhcchhhhheeeecC-HHHHHHHHhhcCCCCCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999995 456666666666677889999999999987554 44444555666788888
Q ss_pred HHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHH
Q 037587 344 GLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 344 ~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 423 (464)
.|.+.. .+.+++|+|++++ +...++ ++||.|+++... ..+++||+++ +.++.+++++
T Consensus 270 ~L~~~~----~~~~~~~~~~~~~-------------~~~~l~-~~gi~v~~~~~~---~~~~~Ri~~~--~~~~~~~l~~ 326 (337)
T PRK03967 270 ELGEYA----YPSDANFLLLKLD-------------AYDYLL-ENGIVVRKLSGR---LEGHIRVTVG--KREENDEFIK 326 (337)
T ss_pred HhccCc----CCCCCcEEEEhHH-------------HHHHHH-HCCEEEEeCCCC---CCCeEEEecC--CHHHHHHHHH
Confidence 887642 3466789999874 345555 579999986532 3579999998 5788889999
Q ss_pred HHHHHHHhhC
Q 037587 424 RIKVFAQSCN 433 (464)
Q Consensus 424 ~l~~~l~~~~ 433 (464)
+|+++.+.+.
T Consensus 327 ~l~~~~~~~~ 336 (337)
T PRK03967 327 ALKEIKEGYG 336 (337)
T ss_pred HHHHHHHhcC
Confidence 9988877654
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=340.00 Aligned_cols=310 Identities=17% Similarity=0.239 Sum_probs=239.2
Q ss_pred CCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 35 PSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
+.++|+|+.|+||++++.. . +.. .....||.. ..+||++||++++ +++|++
T Consensus 19 ~~~~i~l~~ne~p~~~~~~-~-~~~---------------~~~~~yp~~--~~~Lr~~ia~~~~----------~~~I~i 69 (330)
T PRK05664 19 LADWLDLSTGIAPWPWPVP-A-IPA---------------DAWARLPET--DDGLEAAARAYYG----------APQLLP 69 (330)
T ss_pred HHHheeecCCcCCCCCCCc-c-cCH---------------HHHHhCCCC--hHHHHHHHHHHhC----------CCCEEE
Confidence 3468999999999865311 0 111 113458754 3899999999984 479999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|++++|.+++. +.+||+|++++|+|+.|...++.. |++++.++++ .+++.+. ++++++
T Consensus 70 t~Gs~~al~~~~~--~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~v~~~----------~~~~~~~-------~~~~v~ 129 (330)
T PRK05664 70 VAGSQAAIQALPR--LRAPGRVGVLSPCYAEHAHAWRRA-GHQVRELDEA----------EVEAALD-------SLDVLV 129 (330)
T ss_pred CcCHHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHHHc-CCeEEEechh----------hHhhhhc-------CCCEEE
Confidence 9999999999863 579999999999999999988877 9999998753 3444432 567899
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.+++++|+++|++++++||+||+|.++ ... .++..+. ..+++++++||||+
T Consensus 130 l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~--~~~----~s~~~~~----------~~~~vi~~~SfSK~ 193 (330)
T PRK05664 130 VVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDN--TPQ----HSLAACA----------HRPGLIVLRSFGKF 193 (330)
T ss_pred EeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccC--CCc----ccccccc----------cCCCEEEEeecccc
Confidence 9999999999999999999999999999999999999863 221 2333332 23689999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK 354 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 354 (464)
||+||+|+||++++ +.+.+.+......+.++.+.|.++..+|.+..+ .++.++.++++++.+.+.|+++|++..+
T Consensus 194 ~gl~GlRiG~~v~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 268 (330)
T PRK05664 194 FGLAGARLGFVLAE-PALLRALAELLGPWTVSGPTRWLAQAALADTPW----QRRQRERLLAASQRLAALLRRHGLTPAG 268 (330)
T ss_pred ccCCCcceEEEEeC-HHHHHHHHHhcCCCCCCHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 99999999999995 445565665555566889999999999987654 5667888999999999999998865332
Q ss_pred CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 355 SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 355 ~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
..++|+|++++. ..++...+ .++||.|++ |+ .++++||+++. ++++++++++.|+++.++
T Consensus 269 -~~~~f~~~~~~~---------~~~~~~~l-~~~gi~v~~---f~--~~~~iRis~~~-~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 269 -GCALFQWVRTED---------AAALHEFL-ARRGILTRL---FE--QPASLRFGLPA-DEADWARLDQALLAYRKE 328 (330)
T ss_pred -CcceEEEEecCC---------HHHHHHHH-HHCCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHHhh
Confidence 223789988751 12455555 577999984 43 35799999984 578888888888877554
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=342.06 Aligned_cols=326 Identities=20% Similarity=0.342 Sum_probs=256.4
Q ss_pred CCceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.|+|++++ +.+.+++.+.. .....|++..+ .++|+++|++++ +++++|+
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 90 (361)
T PRK00950 33 PESIIKLGSNENPLGPSPKAVEAIEKEL-------------SKIHRYPEPDA-PELREALSKYTG--------VPVENII 90 (361)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHHHH-------------HhhcCCCCCCH-HHHHHHHHHHhC--------CCHHHEE
Confidence 4488999999998854 55665555431 23457887654 999999999985 6889999
Q ss_pred E-eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 L-TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 i-t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+ |+|+++++..++.+++++||.|++++|+|+.+...++.. |++++.++.+ ++|.+|++.+++.+.+ ++++
T Consensus 91 ~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~~~~~--~~~~~~~~~l~~~~~~------~~~~ 161 (361)
T PRK00950 91 VGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAH-GAKPVYAKRE--EDFSLDVDSVLNAITE------KTKV 161 (361)
T ss_pred EeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEeecC--CCCCcCHHHHHHHhcc------CCCE
Confidence 9 799999999999999999999999999999888777766 9999999854 4678999999988754 7889
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
+++++||||||.+++.+++.++++ ++|+++|+||+|.++. +. ...+ +.. ..+++++++|||
T Consensus 162 v~~~~p~nptG~~~~~~~l~~l~~---~~~~~li~De~y~~~~--~~--~~~~---~~~---------~~~~vi~~~S~S 222 (361)
T PRK00950 162 IFLCTPNNPTGNLIPEEDIRKILE---STDALVFVDEAYVEFA--EY--DYTP---LAL---------EYDNLIIGRTFS 222 (361)
T ss_pred EEEeCCCCCCCCCcCHHHHHHHHH---HCCcEEEEECchhhhC--cc--chHH---HHH---------hcCCEEEEEeeh
Confidence 999999999999999888777654 6799999999998753 22 2222 332 226899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 352 (464)
|+||++|+|+||+++++ .+.+.+.+....+.++++.|.++..++.+.++ +++.++.++++++.+.+.|. +.+
T Consensus 223 K~~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~l~---~~~ 294 (361)
T PRK00950 223 KVFGLAGLRIGYGFVPE-WLIDYYMRAKTPFSLTRLSQAAAIAALSDKEY----IEKSIEHGIKSREYLYNELP---FKV 294 (361)
T ss_pred HhhcCchhhcchhcCCH-HHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHhhcC---eeE
Confidence 99999999999999954 45555665666566888999999999987554 56666777788888877775 555
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
.+ .+++|+|++++. . ...+++..++ ++||.|+||..|+..+++++||+++ +++++++++++|++++
T Consensus 295 ~~-~~~~~i~~~~~~-~------~~~~~~~~l~-~~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il 360 (361)
T PRK00950 295 YP-SEANFVLVDVTP-M------TAKEFCEELL-KRGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIV 360 (361)
T ss_pred CC-CcceEEEEECCC-C------CHHHHHHHHH-HCCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHh
Confidence 54 456799999842 1 1235777776 5799999999886555779999998 5789999999998875
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=339.38 Aligned_cols=327 Identities=22% Similarity=0.365 Sum_probs=263.3
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
++++|+|+++.|+++ ++.+.+++.+.. .....|++..+ .++|+++|++++ +++++|+
T Consensus 18 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 75 (346)
T TIGR01141 18 GKEVIKLNSNENPFGPPPKAKEALRAEA-------------DKLHRYPDPDP-AELKQALADYYG--------VDPEQIL 75 (346)
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHhH-------------HHhhcCCCCCH-HHHHHHHHHHhC--------cChHHEE
Confidence 467999999999885 455666655531 23457887766 999999999986 6789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|++++|+|+.+...+... |++++.+++++ ++.+|++.+++.+.. ++++|
T Consensus 76 ~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~~~~------~~~~v 146 (346)
T TIGR01141 76 LGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIH-GAEVVKVPLDE--DGQLDLEDILVAIDD------KPKLV 146 (346)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEeccCC--CCCCCHHHHHHhcCC------CCCEE
Confidence 9999999999999999999999999999999887777766 99999999864 367899999987543 78899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++|+||||.++|.++++++++.++ +++++|+||+|.++.+... ..+ ... ..+++++++|+||
T Consensus 147 ~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~---~~~---~~~---------~~~~~i~~~S~sK 210 (346)
T TIGR01141 147 FLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPS---TLP---LLA---------EYPNLIVLRTLSK 210 (346)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCcc---HHH---HHh---------hCCCEEEEehhhH
Confidence 99999999999999999999999987 7999999999986433211 111 222 1257899999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRC 352 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 352 (464)
.||++|+|+||++++ +.+.+.+......+++++++|.++..++++.. +.++.++.++++++.+.+.|+++ |+++
T Consensus 211 ~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 285 (346)
T TIGR01141 211 AFGLAGLRIGYAIAN-AEIIDALNKVRAPFNLSRLAQAAAIAALRDDD----FIEKTVEEINAERERLYDGLKKLPGLEV 285 (346)
T ss_pred hhhchhhhceeeecC-HHHHHHHHhccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999984 55666666665566678999999999998754 46778888889999999999988 8887
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 426 (464)
.++ +|+|+|++++. . ..+++..|. ++||.+.||..|+.. ++++||+++ ++++++++++.|+
T Consensus 286 ~~~-~g~~~~~~~~~--~------~~~~~~~L~-~~gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~~~~l~ 346 (346)
T TIGR01141 286 YPS-DANFVLIRFPR--D------ADALFEALL-EKGIIVRDLNSYPGL-PNCLRITVG--TREENDRFLAALR 346 (346)
T ss_pred CCC-cCCEEEEecCC--C------HHHHHHHHH-HCCeEEEeCCCcCCC-CCeEEEecC--CHHHHHHHHHHhC
Confidence 654 55799999874 1 235666665 679999999988644 789999998 6899999888763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=328.70 Aligned_cols=313 Identities=18% Similarity=0.265 Sum_probs=250.8
Q ss_pred CCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 35 PSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.+++|+|+.++|+++++... .. .....+|+++.+ +++|++++++++ +++++|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~----~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~ 69 (330)
T TIGR01140 16 PEDWLDFSTGINPLGPPVPP----IP-------------ASAWARYPDPEY-DELRAAAAAYYG--------LPAASVLP 69 (330)
T ss_pred hhheeEccccCCCCCCChhh----cc-------------hHHHhhCCCccH-HHHHHHHHHHhC--------CChhhEEE
Confidence 45679999999999876211 11 134578998776 999999999985 67899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..+..+ +.+| .|++++|+|..+...+... |++++.++ |++.+++.+. ++++++
T Consensus 70 t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~-g~~~~~~~---------d~~~l~~~~~-------~~~~v~ 130 (330)
T TIGR01140 70 VNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWRAA-GHEVVELP---------DLDRLPAALE-------ELDVLV 130 (330)
T ss_pred CCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHc-CCEEEEeC---------CHHHHHhhcc-------cCCEEE
Confidence 99999999998766 4677 6999999999999888877 99998886 6788887763 467899
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
+++||||||.+++.+++++|+++|+++|++||+||+|.++.+. .++..+.. ..+++++++||||.
T Consensus 131 i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~------~~~~~~~~---------~~~~~i~~~S~SK~ 195 (330)
T TIGR01140 131 LCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD------ASLAPQAA---------RFPGLVVLRSLTKF 195 (330)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc------cchhhHhc---------cCCCEEEEEecchh
Confidence 9999999999999999999999999999999999999875432 12222221 23789999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCL 353 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~ 353 (464)
||++|+|+||+++++ .+.+.+..+...+.+++++|.++..++++.++ .+..++.++++++.+.+.|++++ +++.
T Consensus 196 ~g~~G~R~G~i~~~~-~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 270 (330)
T TIGR01140 196 FGLAGLRLGFVVAHP-ALLARLREALGPWTVNGPARAAGRAALADTAW----QAATRARLAAERARLAALLARLGGLEVV 270 (330)
T ss_pred hcCchhhhhheeCCH-HHHHHHHhcCCCCCchHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHhCCCceEC
Confidence 999999999999954 46666666666667889999999999987665 45677889999999999999987 5655
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRI 425 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 425 (464)
+ .+|+|+|++++. ..+++++|+ ++||.+.||..|+....+++||+++. ..++ +.++++|
T Consensus 271 ~-~~~~f~~~~~~~---------~~~l~~~l~-~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 271 G-GTALFLLVRTPD---------AAALHEALA-RRGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred C-CCCeEEEEEcCC---------HHHHHHHHH-HCCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 4 467899999873 135777776 57999999999964456799999985 3333 7776665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=301.07 Aligned_cols=348 Identities=20% Similarity=0.254 Sum_probs=267.1
Q ss_pred ccccCCCCCCcHHHHHHHHHHHH-HHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCC
Q 037587 76 ELALFQDYHGFPDAKKELVKLMA-RIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRP 154 (464)
Q Consensus 76 ~~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~ 154 (464)
...+|+++.|.++|+.-|..+.+ ..+.. ....-+|++|+|.+.+++.+++.++.+||.|+++.++|+.....++..
T Consensus 92 ~alQYg~s~G~peLl~fik~h~~~~ih~p--~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~- 168 (472)
T KOG0634|consen 92 RALQYGQSSGIPELLLFIKDHNRPTIHAP--PYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEAL- 168 (472)
T ss_pred hhhccccccCcHHHHHHHHHhccccccCC--CCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhcccc-
Confidence 35689999999999999999665 22221 123458999999999999999999999999999999999988888877
Q ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHHhhc---CCceEEEEEeCC--CCCCCCCCCHHHHHHHHHHHhhCCeEEEEec
Q 037587 155 GVEIVPIHCSSSNGFRITISALENAYQQAQTL---NLKVKGVLITNP--SNPLGTAMTHQELNHLINFSKSKRIHIVSDE 229 (464)
Q Consensus 155 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~---~~~~~~vil~~P--~NPtG~~~s~~~l~~i~~~~~~~~~~lI~De 229 (464)
|+++++|+++.+ ++++|.|++.+...... .++++ |+.|-| +||||..+|.+.+++|.++|++|+++||+||
T Consensus 169 gv~~ipv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~-vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDd 244 (472)
T KOG0634|consen 169 GVKIIPVKMDQD---GIDPESLEEILSNWKPGSYKKPKPH-VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDD 244 (472)
T ss_pred CceEEeccccCC---CCCHHHHHHHHhcCCcccccCCCCe-EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence 999999998754 48999999999876433 24555 556666 8999999999999999999999999999999
Q ss_pred cccccccCC---C---CCCccchhhhhhcc-CcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc
Q 037587 230 IYSGTVFDS---P---SSSFISIMEAVMDR-NIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF 302 (464)
Q Consensus 230 ay~~~~~~~---~---~~~~~~~~~l~~~~-~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~ 302 (464)
+|.-+.|.. . +.+..+...+...+ +.=.+.|..++||.+.||||.++ ||+|+||+.+++..+...+......
T Consensus 245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~ 323 (472)
T KOG0634|consen 245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVA 323 (472)
T ss_pred ccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhccee
Confidence 998777762 1 11112211111100 00012356789999999999998 9999999999665555554433211
Q ss_pred -CCCChHHHHHHHHHcCC---chhhHHHHHHHHHHHHHHHHHHHHHHHhC---C-CeeecCCccEEEEEecCcc--cccC
Q 037587 303 -GLVSSQTQYLLSRMLSD---KKFTCNYMKENRKRLRKRKEMLVSGLKVA---G-IRCLKSNAGLFCWVDMRHL--LVSN 372 (464)
Q Consensus 303 -~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g-~~~~~~~~g~f~~~~l~~~--~~~~ 372 (464)
..+|.++|.++-++|.. ..| .+|+.+.+..|..|+..+..+|.+. + .++.+|.+|||+|++++-. -..+
T Consensus 324 t~~pSg~sq~iv~a~l~~wgqeG~-~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~ 402 (472)
T KOG0634|consen 324 TSGPSGFSQGIVYAMLKRWGQEGF-LRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKK 402 (472)
T ss_pred ecCcccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccccccccc
Confidence 23566778777777664 334 5889999999999999999999886 4 6788999999999999821 1112
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCCCCCC-C----CCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSSCHCN-E----PGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~----~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
+....+++....+.++||.+.+|..|... . .-+||++++..+.|+++++++++..+++++
T Consensus 403 ~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 403 SINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred chHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 23334556677777899999999999854 2 239999999889999999999999999875
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=273.37 Aligned_cols=330 Identities=21% Similarity=0.295 Sum_probs=261.0
Q ss_pred CCceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..+++.++.++|+..| |... +--..|+++.. .+++.++++- -++++++|+
T Consensus 40 G~~iv~ld~~e~~ryPdP~q~--------------------efk~~~~d~rn-k~ls~a~~~d--------kpLt~dnic 90 (375)
T KOG0633|consen 40 GRDIVKLDANENPRYPDPEQM--------------------EFKYVYPDPRN-KRLSDALAQD--------KPLTSDNIC 90 (375)
T ss_pred CCCceEeccccCCCCcCHHHc--------------------ccccccCCccc-chhhhhcccC--------CCCCccceE
Confidence 3467888888777643 3111 11235666653 6677666654 247899999
Q ss_pred EeCChHHHHHHHHHHhcCCC-CeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPG-DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++.|+.|.|++++++.|.|| ++|++-.|+|+.|.-.+... +++|+.+|+.+ +|.++.+++.+.++. ...+|.
T Consensus 91 ~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iN-d~eVvkvpl~p--dF~lnvdai~evl~~----ds~iK~ 163 (375)
T KOG0633|consen 91 VGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAIN-DAEVVKVPLNP--DFSLNVDAIAEVLEL----DSKIKC 163 (375)
T ss_pred EecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecC-CceEEEecCCC--CccccHHHHHHHHhc----cccceE
Confidence 99999999999999999999 99999999999998877766 99999999975 899999999998864 347999
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
+++++|+||||..++.+++++|++... +.++++||+|.+ |.+. .|.+.++.++ +|++++.+||
T Consensus 164 ~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYid--Fsg~----~S~~~lV~kY---------pNLivlqTlS 226 (375)
T KOG0633|consen 164 IFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYID--FSGV----ESRMKLVKKY---------PNLIVLQTLS 226 (375)
T ss_pred EEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEe--eccc----cccchHhHhC---------Cceeehhhhh
Confidence 999999999999999999999988643 788999999998 5554 3666677755 8999999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR 351 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 351 (464)
|.||++|+|+||-.. +..+.+.+.++..++++|.+...++.+++.+.. -+.++..++.+-+.+.+|...|.+. ++.
T Consensus 227 KsfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n--~kkme~~rdaiv~er~RL~keLt~v~~~~ 303 (375)
T KOG0633|consen 227 KSFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN--GKKMEDVRDAIVRERERLFKELTEVPFLN 303 (375)
T ss_pred hhcCcceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--chHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 999999999999988 556788888888777789888888888898655 3568888888888889999999886 332
Q ss_pred --eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe-CCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 352 --CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS-PGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 352 --~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~-pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
+.+..++ |+.+++...-+ ..+..+...++.+.||.|+ .|+.-+ ..|++||+++ ++|+...+++.|+++
T Consensus 304 ~~~gg~daN-FiLi~v~~~~n----~~akkly~q~at~~gVvVRfrgse~~--c~G~lRitvG--t~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 304 DYPGGSDAN-FILIEVTGGDN----GMAKKLYKQDATKMGVVVRFRGSEEG--CKGYLRITVG--TPEENTVLMKCLKQF 374 (375)
T ss_pred CCCCccccc-EEEEEEcCCCc----HHHHHHHHHHHHhcceEEEEcCCccc--cceeEEEEcC--CcccchHHHHHHHhh
Confidence 3345565 88888864311 3344577777888999998 343322 3689999999 688899999998876
Q ss_pred H
Q 037587 429 A 429 (464)
Q Consensus 429 l 429 (464)
+
T Consensus 375 l 375 (375)
T KOG0633|consen 375 L 375 (375)
T ss_pred C
Confidence 3
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=269.25 Aligned_cols=344 Identities=20% Similarity=0.368 Sum_probs=266.5
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCChhhhcccCC
Q 037587 76 ELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-DPGDAFLLPTPYYPGFDRDLKWRP 154 (464)
Q Consensus 76 ~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~~ 154 (464)
.+..|+.+.|.+-+|+.+|+|..++-| ++++|++|++|.|++.++..++..++ ++.+.|++|-|.|+-|...+..+
T Consensus 105 s~GaYS~SqGv~~vR~~VA~~I~rRDG--~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~- 181 (475)
T KOG0258|consen 105 SLGAYSDSQGVPGVRKHVAEFIERRDG--IPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLL- 181 (475)
T ss_pred cccccccccCChhHHHHHHHHHHhccC--CCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHh-
Confidence 466799999999999999999998877 78899999999999999999999876 46799999999999999888887
Q ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 155 GVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 155 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
|...+++.++++.+|.+|.++|++.+.++. .+.+++++++.||.||||.++|.+.+++|+.+|.+.+++++.||+|.+-
T Consensus 182 ~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~N 260 (475)
T KOG0258|consen 182 GGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDN 260 (475)
T ss_pred CCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhh
Confidence 999999999999999999999999999876 6779999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEe--cCHHHHHHHHHhcccCC-CChHHH
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYS--NNERVVSAATKMSSFGL-VSSQTQ 310 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~--~~~~~~~~~~~~~~~~~-~s~~~q 310 (464)
.|... +.|+|+...+.+++...+ ..--++.++|.||.+ |-.|.|-||+-. ..+.+.+.+.++.+... .+...|
T Consensus 261 vy~~~-skFhSfKKvl~emg~~~~--~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ 337 (475)
T KOG0258|consen 261 VYTTG-SKFHSFKKVLHEMGNPYP--DNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQ 337 (475)
T ss_pred ccCCC-cchHhHHHHHHHhcCccC--CceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccch
Confidence 88643 378888887776631110 112345578999997 668999999843 34455555555444332 233455
Q ss_pred HHHHHHcCC-----chh--hHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecC--cc----cccCChhH
Q 037587 311 YLLSRMLSD-----KKF--TCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMR--HL----LVSNTFEA 376 (464)
Q Consensus 311 ~~~~~~l~~-----~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~--~~----~~~~~~~~ 376 (464)
..+-.+... ..+ ...........++++...+.+.+..+ |+.+.+++|.||++.++. .. ........
T Consensus 338 ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~P 417 (475)
T KOG0258|consen 338 KLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAP 417 (475)
T ss_pred hhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCC
Confidence 555555542 222 12223335567788888999999988 999999999999987653 21 11112223
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCCCC-CeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 377 EKELWKKIIFEVGLNISPGSSCHCNEP-GWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 377 ~~~l~~~ll~~~gI~v~pg~~f~~~~~-~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
+.-.|.+||+..||.++||+.|+.... -+||.+|-. +. + +.+++++++-.
T Consensus 418 D~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp--~~-~-~~i~~~~~fH~ 468 (475)
T KOG0258|consen 418 DEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILP--PG-L-EIIEKFKKFHA 468 (475)
T ss_pred cHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecC--ch-h-HHHHHHHHHHH
Confidence 446889999999999999999997433 369999863 33 4 67777766544
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=278.32 Aligned_cols=345 Identities=29% Similarity=0.541 Sum_probs=264.0
Q ss_pred EEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCC
Q 037587 39 IQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAG 117 (464)
Q Consensus 39 i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G 117 (464)
|+|+.+.+++.. +.....+.+ ... ......|++..|..++++.++++++..++ .+..++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~~~~~~~~~~~ 67 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAA-AAL----------RAGLLGYYPDPGLPELREAIAEWLGRRGG--VDVPPEEIVVTNG 67 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHH-Hhh----------ccCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCcceEEEecC
Confidence 467777777742 333332222 000 12345688888999999999999997654 2345778999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeC
Q 037587 118 STAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN 197 (464)
Q Consensus 118 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~ 197 (464)
+++++..++.++.++||+|+++.|+|..+...++.. |.+++.++.+..+.+..+.+.++... ++++++|++++
T Consensus 68 ~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~v~i~~ 140 (350)
T cd00609 68 AQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLA-GAEVVPVPLDEEGGFLLDLELLEAAK------TPKTKLLYLNN 140 (350)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC-CCEEEEEecccccCCccCHHHHHhhc------CccceEEEEEC
Confidence 999999999999999999999999999999988877 99999999875444333224444433 34889999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCC
Q 037587 198 PSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM 277 (464)
Q Consensus 198 P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~ 277 (464)
|+||||.++|.+++++|+++|+++|+++|+|++|+.+.+.+. . ....... +..+.+++++|+||.+++
T Consensus 141 ~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~--~-~~~~~~~---------~~~~~~~~~~s~~K~~~~ 208 (350)
T cd00609 141 PNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGE--P-PPALALL---------DAYERVIVLRSFSKTFGL 208 (350)
T ss_pred CCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCc--c-cccccCc---------CccCcEEEEeecccccCC
Confidence 999999999999999999999999999999999997655433 1 1101111 134678999999999998
Q ss_pred CccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee-ec
Q 037587 278 PGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC-LK 354 (464)
Q Consensus 278 ~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~ 354 (464)
+|+|+||++++++.+.+.+.....+ +..+...+.++..++.... ++.++.++.+.++++++.+.|++.+... ..
T Consensus 209 ~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 285 (350)
T cd00609 209 PGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE---EHLEELRERYRRRRDALLEALKELGPLVVVK 285 (350)
T ss_pred cccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 9999999999664566656555444 4577788888888888753 4577788889999999999999886543 45
Q ss_pred CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 037587 355 SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426 (464)
Q Consensus 355 ~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 426 (464)
+.+|+|+|++++... ..+.+.+++.++||.+.++..|....+.++||+++.. +++++.++++|+
T Consensus 286 ~~~g~~~~~~~~~~~-------~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al~ 349 (350)
T cd00609 286 PSGGFFLWLDLPEGD-------DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERLA 349 (350)
T ss_pred CCccEEEEEecCCCC-------hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence 677899999987531 1235667778889999999887655577999999975 999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=246.40 Aligned_cols=358 Identities=20% Similarity=0.289 Sum_probs=256.5
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
++.|.|+-+ ||.-.|.+.+..+.... .++.+. ...+.+++|..++|...|.+++++.+++.+| ..+++.||.+|
T Consensus 30 ~g~imLggG-NPa~iPem~~~f~~~~a-emla~~--~~~e~~cnY~~pQG~~~li~ala~~l~~~yg--wnit~~NIalT 103 (417)
T COG3977 30 PGAIMLGGG-NPARIPEMDDYFQDLLA-EMLASG--KATEALCNYDGPQGKAVLIDALAKMLRREYG--WNITAQNIALT 103 (417)
T ss_pred CCceeeCCC-CcccChhHHHHHHHHHH-HHHhcc--hHHHHHhcCCCCcchhHHHHHHHHHHHHHhC--CCCccceeeec
Confidence 457888765 55544555555444211 111111 1124578999999999999999999999988 45789999999
Q ss_pred CChHHHHHHHHHHhcC---CCC--eEE-EcCCCCCChhhhcccCCCcEEEE---EecCCCCC--cccCHHHHHHHHHHHh
Q 037587 116 AGSTAANETLMFCLAD---PGD--AFL-LPTPYYPGFDRDLKWRPGVEIVP---IHCSSSNG--FRITISALENAYQQAQ 184 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~---~gd--~Vl-v~~p~y~~~~~~~~~~~g~~~~~---v~~~~~~~--~~~d~~~l~~~i~~~~ 184 (464)
||++.+.+.++..|.. .|+ +|+ -..|.|-+|..+.-.- ..=|.. +.+.+.+. |.+|.+++.-
T Consensus 104 nGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~-d~fVs~kP~iel~~~g~FKY~vDF~~l~i------ 176 (417)
T COG3977 104 NGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEE-DLFVSAKPNIELLPAGQFKYHVDFEHLHI------ 176 (417)
T ss_pred CCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCc-cceeeccCCcccccccceeeccCHHHccc------
Confidence 9999999999998854 232 344 4588898887653221 111111 12223333 5677777754
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
+..+.+|+++-|.||||.+++.+++.++-+++++||+.+|+|.+|+.- |..- -|.++.-+ =.+|
T Consensus 177 --~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~i--ifsd~~~~-----------w~~N 240 (417)
T COG3977 177 --GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGI--IFSDATPL-----------WNEN 240 (417)
T ss_pred --ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCce--eccccccc-----------CCCC
Confidence 247889999999999999999999999999999999999999999742 3322 22221112 2379
Q ss_pred EEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC--CCChHHHHHHHHHcCCchhhHHHHHH-HHHHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG--LVSSQTQYLLSRMLSDKKFTCNYMKE-NRKRLRKRKEML 341 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l 341 (464)
++.+.|+||. |+||.|+|.+++ ++.+.+++..+.... .++.+.+++++.+++.++. .+.-++ .|-.|+.+....
T Consensus 241 iilC~SLSK~-GLPG~R~GIiIa-ne~viqaitnmn~iisLap~~~G~Aia~~mie~gdl-~rlseqVIrPFY~~~~q~~ 317 (417)
T COG3977 241 IILCMSLSKL-GLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDL-LRLSEQVIRPFYRNRVQTT 317 (417)
T ss_pred EEEEeehhhc-CCCCcceeEEEc-cHHHHHHHHhccceeeecCCCccHHHHHHHhhcchH-HHHHHHhhhHHHHHHHHHH
Confidence 9999999995 899999999999 666777777665543 2456889999999999886 333333 344556666555
Q ss_pred HHHHHh----CCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCC-------CCeEEEEe
Q 037587 342 VSGLKV----AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNE-------PGWFRICF 410 (464)
Q Consensus 342 ~~~l~~----~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~-------~~~~Ris~ 410 (464)
.+.|++ .-+.+..|+|..|+|+-+.+.+- ..++++++| +++||++.||+.|.++. ..|+|+++
T Consensus 318 ~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPI-----tt~~LYq~L-Ka~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~ 391 (417)
T COG3977 318 IAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPI-----TTEELYQRL-KARGVLMVPGHYFFPGLDKEWPHTHQCMRMNY 391 (417)
T ss_pred HHHHHHhcCccceeeecCCcceeehhhhccCCC-----CHHHHHHHH-HhCeEEEecccccCCCCCCCCCCccceEEEec
Confidence 555554 35677889999999997765432 234677776 67899999999998643 35899999
Q ss_pred ecCCHHHHHHHHHHHHHHHHhh
Q 037587 411 ANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 411 ~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
.. ++++++.++++|.+.+++.
T Consensus 392 ~~-~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 392 VP-EPEKIEKGVAILAEEVERA 412 (417)
T ss_pred CC-CHHHHHHHHHHHHHHHHHH
Confidence 84 8899999999999988764
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=277.76 Aligned_cols=352 Identities=15% Similarity=0.194 Sum_probs=253.6
Q ss_pred CCceEEeecccc--cccHHH----HHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 35 PSGIIQMGLAEN--QLSFDL----LESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 35 ~~~~i~l~~~~n--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
..++|+|++++. .+++|. +.++..+.. ......|.+..|.++||++++++++
T Consensus 35 g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~------------~~g~~~Y~~~~g~~~Lreaia~~~~---------- 92 (460)
T PRK13238 35 GYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAM------------MRGDEAYAGSRSYYRLEDAVKDIFG---------- 92 (460)
T ss_pred CCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHH------------HhCCcccCCCCCHHHHHHHHHHHhC----------
Confidence 346899999887 354322 333322211 0223579999999999999999985
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCC------CCcc--cCHHHHHHHH
Q 037587 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS------NGFR--ITISALENAY 180 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~------~~~~--~d~~~l~~~i 180 (464)
.+++++|+|+++++..++.++++||| |++++|.|..|...+... |++++.+++++. ++|. +|++.|++.+
T Consensus 93 ~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~-G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i 170 (460)
T PRK13238 93 YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELN-GATAVDLVIDEALDTGSRHPFKGNFDLEKLEALI 170 (460)
T ss_pred CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHc-CCEEEEEeccccccccccccccCCcCHHHHHHHH
Confidence 35799999999999999999999999 999999999988877766 999999998642 3565 9999999998
Q ss_pred HHHhhcCCceEEEEEeCCCCCCC-CCCCHHHHHHHHHHHhhCCeEEEEecccc--ccccCCC---CCCccchhhhhhccC
Q 037587 181 QQAQTLNLKVKGVLITNPSNPLG-TAMTHQELNHLINFSKSKRIHIVSDEIYS--GTVFDSP---SSSFISIMEAVMDRN 254 (464)
Q Consensus 181 ~~~~~~~~~~~~vil~~P~NPtG-~~~s~~~l~~i~~~~~~~~~~lI~Deay~--~~~~~~~---~~~~~~~~~l~~~~~ 254 (464)
.+. ..+++++|++++|||||| .++|.+++++|.++|++||+++|+|+++. ...|... .....++.++
T Consensus 171 ~~~--~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i----- 243 (460)
T PRK13238 171 EEV--GAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI----- 243 (460)
T ss_pred hhc--CCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH-----
Confidence 742 113689999999999998 99999999999999999999999999763 2334221 0012333222
Q ss_pred cCCCCCCCCcEEEEcCCCcCCCCCccEE------EEEEecCHHHHHHHHHhc----c---cCCCChHHHHHHHHHcCCch
Q 037587 255 IDESDDLWSRIHIVYSLSKDFSMPGFRV------GMIYSNNERVVSAATKMS----S---FGLVSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 255 ~~~~~~~~~~vi~l~S~SK~~g~~GlRi------G~l~~~~~~~~~~~~~~~----~---~~~~s~~~q~~~~~~l~~~~ 321 (464)
+..+.|++|.+.++|+|+ |+++++++.+.+.++... . +...+...|.+++..+.+..
T Consensus 244 ----------~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~ 313 (460)
T PRK13238 244 ----------AREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM 313 (460)
T ss_pred ----------hhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh
Confidence 223456666666666664 356665556666555542 1 22234455777776665311
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc---CChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS---NTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~---~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
- ..+++.+. +++++|.+.|.+.|+++..|.||+|+++++...... ... ...+++.+|+.+.||.+.|++.|
T Consensus 314 ~-~~~~~~~~----~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~-~~~~~a~~L~~e~GV~~~~~~~f 387 (460)
T PRK13238 314 D-EDYLAYRI----GQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQF-PAQALACELYLEAGIRGVEIGSL 387 (460)
T ss_pred C-hHHHHHHH----HHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCC-chHHHHHHHHHHcCeeeecccce
Confidence 1 22343333 256889999999999999999999999999754211 111 23569999999999999999887
Q ss_pred CCCC-----------CCeEEEEeec--CCHHHHHHHHHHHHHHHHhhC
Q 037587 399 HCNE-----------PGWFRICFAN--ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 399 ~~~~-----------~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.... ..++|+++.. .+.+.++.+.++|+++.++..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~ 435 (460)
T PRK13238 388 LLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENRE 435 (460)
T ss_pred ecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHhHh
Confidence 7432 3689999975 489999999999999875555
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-31 Score=256.48 Aligned_cols=281 Identities=15% Similarity=0.149 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEc---CCCCCChhhhcccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLP---TPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~---~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
.+|++.+|++++ ++++++++++|+++++..++.+++++||.|+++ .|+|..|...++.. |++++.+
T Consensus 57 ~~Le~~lA~~~g--------~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~-ga~~~~~-- 125 (346)
T TIGR03576 57 EKVQELGREHLG--------GPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLA-GAEYFES-- 125 (346)
T ss_pred HHHHHHHHHHcC--------CCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHc-CCEEecc--
Confidence 455555555554 678999999999999999999999999999975 57888888888776 8876432
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
.+++.++. .+++++|+++ ++||+|.+++.+++++|+++|+++|+++|+||+|..+..... ..
T Consensus 126 -------~~l~~l~~--------~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~--~~ 187 (346)
T TIGR03576 126 -------DELSELKK--------IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLY--GQ 187 (346)
T ss_pred -------CCHHHHhh--------CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccC--CC
Confidence 13444321 1256777774 579999999999999999999999999999999986543211 11
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC--CCChHHHHHHHHHcCCch
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG--LVSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~ 321 (464)
.+.... +..+++.|||| +++|+|+||+++++ .+.+.+.+....+ +++++.|.++.++|+...
T Consensus 188 ~~~~~~-------------~~divv~s~SK--alaG~r~G~v~~~~-~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~ 251 (346)
T TIGR03576 188 PPALDL-------------GADLVVTSTDK--LMDGPRGGLLAGRK-ELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE 251 (346)
T ss_pred CCHHHc-------------CCcEEEeccch--hccccceEEEEeCH-HHHHHHHHhhcCcccCccHHHHHHHHHHHhhcc
Confidence 121111 12366789999 56899999999955 4555565554332 357788888888886532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN 401 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~ 401 (464)
.+..++.++++++.+.+.+.. +.+.++.+| |+|++++.. ...+++..+++++||.|+||..|. .
T Consensus 252 -----~~~~~~~l~~r~~~~~~~l~~--~~~~~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~ 315 (346)
T TIGR03576 252 -----LSRIRDAFKRKEEVYLRLFDK--LNVERTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-G 315 (346)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHh--CCCCcCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-C
Confidence 245577788888888877774 556666776 899998741 112467788899999999998884 3
Q ss_pred CCCeEEEEeecCCHH---HHHHHHHHHHHHH
Q 037587 402 EPGWFRICFANITEE---TLQVALQRIKVFA 429 (464)
Q Consensus 402 ~~~~~Ris~~~~~~e---~l~~~l~~l~~~l 429 (464)
.++|+||+++. +++ +++.++++|++-+
T Consensus 316 ~~~~vRis~~~-~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 316 ASKTLRFDLAA-KDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred CCCeEEEEEec-ChHHhcCHHHHHHHHHhcc
Confidence 47899999995 333 6999999987643
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=262.82 Aligned_cols=324 Identities=11% Similarity=0.118 Sum_probs=221.9
Q ss_pred eEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCC
Q 037587 38 IIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAG 117 (464)
Q Consensus 38 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G 117 (464)
+|||++|+|+.|+|.+.+++... ......|.+..+..+|+++||++++ ++ .+++++|
T Consensus 1 ~~~~~~~~~~~p~~~~~~a~~~~-------------~~~~~~Y~~~~~~~~L~~~la~~~g--------~~--~~~v~~~ 57 (333)
T PRK10534 1 MIDLRSDTVTRPSRAMLEAMMAA-------------PVGDDVYGDDPTVNALQDYAAELSG--------KE--AALFLPT 57 (333)
T ss_pred CcccccccCCCCCHHHHHHHHhc-------------cCCCcccCCCHHHHHHHHHHHHHhC--------CC--eEEEeCc
Confidence 48999999999888888877653 1334578555567999999999986 33 3467777
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCC-hhhh-cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEE
Q 037587 118 STAANETLMFCLADPGDAFLLPTPYYPG-FDRD-LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195 (464)
Q Consensus 118 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~-~~~~-~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil 195 (464)
+++++..++.+++.+||.|+++.|+|.. |... .....+++++.++.+ .+|.+|+++|++++.+......++++|++
T Consensus 58 g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 58 GTQANLVALLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred hHHHHHHHHHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEE
Confidence 8888888888889999999999888753 3221 233313677777765 36889999999887431001115789999
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC
Q 037587 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF 275 (464)
Q Consensus 196 ~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~ 275 (464)
+||+ ||.+++.+++++|+++|+++++++|+||+|........ ..+...+.. ..++++ .||||.|
T Consensus 136 ~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~---~~~~~~~~~---------~~~~~~--~s~SK~~ 199 (333)
T PRK10534 136 ENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAY---GCELKEITQ---------YCDSFT--ICLSKGL 199 (333)
T ss_pred ecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHc---CCCHHHHHh---------cCCEEE--EEeEcCC
Confidence 9776 59999999999999999999999999999872111000 012222211 113333 4899998
Q ss_pred CCCccEEE-EEEecCHHHHHHHHHhcccCC----CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 276 SMPGFRVG-MIYSNNERVVSAATKMSSFGL----VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 276 g~~GlRiG-~l~~~~~~~~~~~~~~~~~~~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|++ +| |+++ ++.+.+.+++....+. .+.+.|.++...+++ . .+ ..+...+.++++.+.|.++|+
T Consensus 200 ~~~---~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~--~----~~-~~~~~~~~r~~l~~~L~~~g~ 268 (333)
T PRK10534 200 GTP---VGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH--N----VA-RLQEDHDNAAWLAEQLREAGA 268 (333)
T ss_pred CCc---ccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh--h----HH-HHHHHHHHHHHHHHHHHhCCC
Confidence 864 68 5777 5556666665554332 223456655555542 1 11 222234456889999999999
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
++.+++ ++|+|++++.. ...++. +++.++||.|+|+. ++|++.+. ++++++++++++|++++
T Consensus 269 ~~~~~~-~nfv~~~~~~~-------~~~~~~-~~l~~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 269 DVMRQD-TNMLFVRVGEE-------QAAALG-EYMRERNVLINASP--------IVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred ccCCCC-ceEEEEECCch-------hHHHHH-HHHHHcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 988886 56999998731 122344 55678899999873 47887753 68999999999999876
Q ss_pred H
Q 037587 430 Q 430 (464)
Q Consensus 430 ~ 430 (464)
.
T Consensus 332 ~ 332 (333)
T PRK10534 332 A 332 (333)
T ss_pred c
Confidence 4
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=249.87 Aligned_cols=346 Identities=15% Similarity=0.118 Sum_probs=232.3
Q ss_pred CCCceEEeecccc-cc-cHHHHHHHHHhhhhhHHhhhccccccc-ccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 34 NPSGIIQMGLAEN-QL-SFDLLESWLASNQEAVELKRNGESLFR-ELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 34 ~~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
...++|+|+.+.. .+ +++.+.+++.+.... .. ....|....|..++++++++++.+.++ . ++
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~----------~~~~~~~~~~~~G~~~l~~~l~~~la~~~g----~-~~ 104 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDS----------HGFGMASVRFICGTQDLHKELEEKLAKFLG----T-ED 104 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHH----------cCCCCcccccccCCcHHHHHHHHHHHHHhC----C-Cc
Confidence 4567899998752 33 345555555543211 00 111223346888999999999888765 2 47
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|++|+| ++++..++.+++++||.|++++|+|+.+...+... |++++.++. .|++.+++.+++......++
T Consensus 105 ~i~~tsG-~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~-~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~ 175 (397)
T PRK06939 105 AILYSSC-FDANGGLFETLLGKEDAIISDALNHASIIDGVRLC-KAKRYRYAN-------NDMADLEAQLKEAKEAGARH 175 (397)
T ss_pred EEEEcCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhc-CCceEEeCC-------CCHHHHHHHHHhhhccCCCC
Confidence 7888888 67888889999999999999999999888777766 888877753 37888888886533223367
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
++|++.+.+||||.. +++++|+++|+++++++|+||+|....+... . ....... .+ ..+.+++++|
T Consensus 176 ~~v~~~~v~~~~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~~~--~-~~~~~~~-~~-------~~~~~i~~~S 241 (397)
T PRK06939 176 KLIATDGVFSMDGDI---APLPEICDLADKYDALVMVDDSHAVGFVGEN--G-RGTVEHF-GV-------MDRVDIITGT 241 (397)
T ss_pred eEEEEecCcCCCCCc---CCHHHHHHHHHHhCCEEEEECcccccCcCCC--C-CCHHHHc-CC-------CCCCcEEEEE
Confidence 777766678999986 4688899999999999999999963222221 1 1111111 11 1245788999
Q ss_pred CCcCCCCCccEEEEEEecCHHHHHHHHHhc-cc--C-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 271 LSKDFSMPGFRVGMIYSNNERVVSAATKMS-SF--G-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
|||+++ |+|+||++++++ +.+.+.... .+ . +.++..+.++.++++.. . ...+.++.++++++.+.+.|.
T Consensus 242 ~sK~~~--g~r~G~v~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~---~-~~~~~~~~~~~~~~~l~~~L~ 314 (397)
T PRK06939 242 LGKALG--GASGGYTAGRKE-VIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL---E-ESDELRDRLWENARYFREGMT 314 (397)
T ss_pred CHHHhC--ccCceEEEeCHH-HHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---h-cCHHHHHHHHHHHHHHHHHHH
Confidence 999994 559999999654 444444332 21 1 12233344444444321 1 124567788889999999999
Q ss_pred hCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEeec-CCHHHHHHHHH
Q 037587 347 VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC--NEPGWFRICFAN-ITEETLQVALQ 423 (464)
Q Consensus 347 ~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Ris~~~-~~~e~l~~~l~ 423 (464)
+.|+++.++.++++ ++.++.. ....+++..|+++ ||.+.++. |+. .+.+++|++++. .++++++++++
T Consensus 315 ~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~ 385 (397)
T PRK06939 315 AAGFTLGPGEHPII-PVMLGDA------KLAQEFADRLLEE-GVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAID 385 (397)
T ss_pred HcCCCcCCCCCCEE-EEEECCH------HHHHHHHHHHHHC-CceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHH
Confidence 88887776667654 3444421 1234577777654 99998643 432 234689999976 78999999999
Q ss_pred HHHHHHHhhC
Q 037587 424 RIKVFAQSCN 433 (464)
Q Consensus 424 ~l~~~l~~~~ 433 (464)
+|++++++.-
T Consensus 386 ~L~~~~~~~~ 395 (397)
T PRK06939 386 AFEKVGKELG 395 (397)
T ss_pred HHHHHHHHhC
Confidence 9999987753
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=241.90 Aligned_cols=334 Identities=13% Similarity=0.099 Sum_probs=225.1
Q ss_pred CCCceEEeeccccccc---HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCC----cHHHHHHHHHHHHHHcCCCCC
Q 037587 34 NPSGIIQMGLAENQLS---FDLLESWLASNQEAVELKRNGESLFRELALFQDYHG----FPDAKKELVKLMARIRGNKVK 106 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~~~~~~~~~~~ 106 (464)
+...+|||+.| +++. ++.+.+++.+.... . + .....|....| ..+++++++++++
T Consensus 14 ~g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~--~---~----~~~~~~~~~~g~~~~~~~l~~~la~~~~-------- 75 (360)
T TIGR00858 14 DGRRLLNFSSN-DYLGLASHPEVIQAAQQGAEQ--Y---G----AGSTASRLVSGNSPLHEELEEELAEWKG-------- 75 (360)
T ss_pred CCceEEecccC-CcccCCCCHHHHHHHHHHHHh--c---C----CCCCCcCcccCCcHHHHHHHHHHHHHhC--------
Confidence 45678999998 4432 35666666654211 0 0 00111222223 3457777777764
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
.+++|++++|+.+.+ .++.+++++||.|+++.|+|+.+...+... |++++.++. +|++.+++.+++. .
T Consensus 76 -~~~~i~~~~G~~~~~-~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~~~~~--~ 143 (360)
T TIGR00858 76 -TEAALLFSSGYLANV-GVISALVGKGDLILSDALNHASLIDGCRLS-GARVRRYRH-------NDVEHLERLLEKN--R 143 (360)
T ss_pred -CCCEEEECchHHHHH-HHHHHhCCCCCEEEEEccccHHHHHHHHhc-CCceEEecC-------CCHHHHHHHHHHc--c
Confidence 356888888865555 567788899999999999999888877766 988887763 4788898888641 1
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
+.++++|++.+++||||...+ +++|.++|+++|+++|+||+|..+.++.. . .+...+.. + +..++++
T Consensus 144 ~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~--~-~~~~~~~~-~------~~~~~~i 210 (360)
T TIGR00858 144 GERRKLIVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGED--G-RGTLEHFG-L------KPEPVDI 210 (360)
T ss_pred cCCCeEEEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCC--C-CchHHhcC-C------CccCCcE
Confidence 125678888889999998865 67788889999999999999986544432 1 12222211 1 0236789
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-ccc--C-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSF--G-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLV 342 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (464)
+++||||+||++| ||++++++ +.+.+... ..+ . ..++..+.++.++++... ..++.++.++++++++.
T Consensus 211 ~i~s~sK~~~~~g---G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----~~~~~~~~~~~~~~~l~ 282 (360)
T TIGR00858 211 QVGTLSKALGSYG---AYVAGSQA-LIDYLINRARTLIFSTALPPAVAAAALAALELIQ----EEPWRREKLLALIARLR 282 (360)
T ss_pred EEEechhhhhccC---cEEEcCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHHH
Confidence 9999999998767 99998544 44444322 221 1 233444445555554221 23456788899999999
Q ss_pred HHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHH
Q 037587 343 SGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFAN-ITEETLQV 420 (464)
Q Consensus 343 ~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~ 420 (464)
+.|+++++++.++. +.|+|+.++.. ....++...|+ ++||.+.++..++. .+.+++||+++. .++++++.
T Consensus 283 ~~L~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~ 354 (360)
T TIGR00858 283 AGLEALGFTLMPSC-TPIVPVIIGDN------ASALALAEELQ-QQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDR 354 (360)
T ss_pred HHHHHcCCccCCCC-CCEEEEEeCCH------HHHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHH
Confidence 99999888777555 45899988642 12335777775 67999998766542 234689999986 68999999
Q ss_pred HHHHHH
Q 037587 421 ALQRIK 426 (464)
Q Consensus 421 ~l~~l~ 426 (464)
++++|+
T Consensus 355 ~l~~l~ 360 (360)
T TIGR00858 355 LAEALK 360 (360)
T ss_pred HHHhhC
Confidence 998874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=244.97 Aligned_cols=323 Identities=16% Similarity=0.233 Sum_probs=233.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcE
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVE 157 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~ 157 (464)
..|.+..|.++|+++++++++ .+++++|+|+++++.+++.++++|||.| +++|+|..+...+... |++
T Consensus 47 ~~Y~~~~g~~~Leeaia~~~g----------~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~-Ga~ 114 (431)
T cd00617 47 EAYAGSKSFYDLEDAVQDLFG----------FKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIEAN-GAV 114 (431)
T ss_pred CccCCCCCHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhC-CCE
Confidence 359999999999999999986 3579999999999999999999999987 6899999888777766 999
Q ss_pred EEEEecCCCCC------cc--cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHHhhCCeEEEEe
Q 037587 158 IVPIHCSSSNG------FR--ITISALENAYQQAQTLNLKVKGVLITNPSNPL-GTAMTHQELNHLINFSKSKRIHIVSD 228 (464)
Q Consensus 158 ~~~v~~~~~~~------~~--~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPt-G~~~s~~~l~~i~~~~~~~~~~lI~D 228 (464)
++.+++++..+ |. +|++.|++.+.+. ...++++|++++||||+ |..+|.+++++|.++|+++|++||+|
T Consensus 115 pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~--~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~D 192 (431)
T cd00617 115 PVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV--GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLD 192 (431)
T ss_pred eEEEecccccccccccCCCCCcCHHHHHHHhCcc--cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 99999875433 44 9999999998741 01247889999999998 99999999999999999999999999
Q ss_pred ccccc--cccCC---CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccE------EEEEEecCHHHHHHHH
Q 037587 229 EIYSG--TVFDS---PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR------VGMIYSNNERVVSAAT 297 (464)
Q Consensus 229 eay~~--~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlR------iG~l~~~~~~~~~~~~ 297 (464)
++... ..|.. .+....++.++ ++.+.|+||.+.++|+| .||++++++.+.+.++
T Consensus 193 aAr~~~na~~i~~r~~g~~~~si~ei---------------~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~ 257 (431)
T cd00617 193 AARFAENAYFIKEREEGYRDKSIAEI---------------AREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEAR 257 (431)
T ss_pred chhhHhhhhhhhcccccccCCCHHHH---------------HHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHH
Confidence 99541 12210 10011233322 23467888888888887 5699997766666555
Q ss_pred Hhc----c---cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccc
Q 037587 298 KMS----S---FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV 370 (464)
Q Consensus 298 ~~~----~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~ 370 (464)
... . ++..+..-..+++..|....- .+++ .+.++ +++++.+.|.+.|+++..|.+|+|+|++++....
T Consensus 258 ~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~~~l---~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~ 332 (431)
T cd00617 258 QRVVLYEGFVTYGGMAGRDMEALAQGLREAVE-EDYL---RHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLP 332 (431)
T ss_pred HhccccCCccccccccHHHHHHHHHHHHhccc-HHHH---HHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcC
Confidence 322 1 112222222333334543211 1223 33333 4588999999999999999999999999886432
Q ss_pred cCC--hhHHHHHHHHHHHhcCeEEeC-CCC-CCC--C-------CCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhCc
Q 037587 371 SNT--FEAEKELWKKIIFEVGLNISP-GSS-CHC--N-------EPGWFRICFAN--ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 371 ~~~--~~~~~~l~~~ll~~~gI~v~p-g~~-f~~--~-------~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
... .....+++.+|+.+.||.+.. |+. ++. . ....+|+++.. .+.++++.+.++|..+.++...
T Consensus 333 ~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~ 411 (431)
T cd00617 333 HIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED 411 (431)
T ss_pred CCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh
Confidence 111 013457888999999999753 441 111 1 12579999965 5889999999999999887663
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=244.21 Aligned_cols=340 Identities=13% Similarity=0.108 Sum_probs=227.9
Q ss_pred CCCceEEeecccc-ccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCC---Cc----HHHHHHHHHHHHHHcCCC
Q 037587 34 NPSGIIQMGLAEN-QLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYH---GF----PDAKKELVKLMARIRGNK 104 (464)
Q Consensus 34 ~~~~~i~l~~~~n-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~----~~lr~~ia~~~~~~~~~~ 104 (464)
+..++|+|+.+.. .++ +|.+.++..+.... ....|+.+. |. .+|++++|++++
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~------------~~~~~~~s~~~~G~~~~~~~le~~ia~~~g------ 97 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDE------------HGFGMSSVRFICGTQDIHKELEAKIAAFLG------ 97 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHHH------------hCCCCCCcCcccCChHHHHHHHHHHHHHhC------
Confidence 4467899999852 222 34455444443111 012344433 64 788999998886
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
.+++++++|+++++..++.+++++||.|+++.|+|+.+...++.. +.+.+.++ ..|++.+++.+++..
T Consensus 98 ----~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~-~~~~~~~~-------~~d~~~l~~~i~~~~ 165 (393)
T TIGR01822 98 ----TEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYA-------NNDMADLEAQLKEAR 165 (393)
T ss_pred ----CCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhc-CCceEEeC-------CCCHHHHHHHHHhhh
Confidence 246788889999999999999999999999999999888777655 66654443 268899999887643
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
....++++|++.+++||||.+.+ +++|+++|+++|+++|+||+|+...++.. ..+...... + ..+.
T Consensus 166 ~~~~~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~---~~~~~~~~~-~-------~~~~ 231 (393)
T TIGR01822 166 AAGARHRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPT---GRGSHELCG-V-------MGRV 231 (393)
T ss_pred hcCCCceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCC---CCchHHhcC-C-------CCCC
Confidence 33336788888888999999965 77888899999999999999963222222 112222211 0 1245
Q ss_pred EEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-ccc--C-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSF--G-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEM 340 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (464)
++++.|+||++ +|+|+||++++ +.+.+.+... ..+ . +.++..+.++.++++.. +..++.++.+++++++
T Consensus 232 di~~~s~sK~l--~g~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~ 304 (393)
T TIGR01822 232 DIITGTLGKAL--GGASGGFTTAR-KEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML----EASNELRDRLWANTRY 304 (393)
T ss_pred eEEEEEChHHh--hCCCcEEEEeC-HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence 68899999987 47899999985 4455544432 222 1 12333334444444321 1245567788889999
Q ss_pred HHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEeec-CCHHH
Q 037587 341 LVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC--NEPGWFRICFAN-ITEET 417 (464)
Q Consensus 341 l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Ris~~~-~~~e~ 417 (464)
+.+.|++.|+.+.++.++ ++.+.++.. ....+++..|+ ++||.+. +..|.. .+..++|++++. .++++
T Consensus 305 l~~~L~~~g~~~~~~~~~-~~~i~~~~~------~~~~~l~~~L~-~~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~ed 375 (393)
T TIGR01822 305 FRERMEAAGFDIKPADHP-IIPVMLYDA------VLAQRFARRLL-EEGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQ 375 (393)
T ss_pred HHHHHHHcCCCCCCCCCC-EEEEEeCCH------HHHHHHHHHHH-HCCeeEe-eeCCCCCCCCCceEEEEECCCCCHHH
Confidence 999998888877665555 555554431 12335777776 4599997 554532 233569999877 68999
Q ss_pred HHHHHHHHHHHHHhhC
Q 037587 418 LQVALQRIKVFAQSCN 433 (464)
Q Consensus 418 l~~~l~~l~~~l~~~~ 433 (464)
+++++++|++++++..
T Consensus 376 i~~~~~~l~~~~~~~~ 391 (393)
T TIGR01822 376 LDRAVEAFTRIGRELG 391 (393)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999877543
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=243.19 Aligned_cols=300 Identities=13% Similarity=0.167 Sum_probs=207.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
...+++.+|++++ + +.+++++|+++++..++.+++++||.|+++.+.|......++.. |++++.++.+.
T Consensus 53 ~~~~~e~lA~~~g--------~--~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~-g~~~~~~~~~~ 121 (370)
T TIGR02539 53 IHDFLEDLAEFLG--------M--DEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERA-GLNVKEVPHTG 121 (370)
T ss_pred HHHHHHHHHHHhC--------C--CceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHc-CCEEEEEecCC
Confidence 4678888888875 3 35677999999999999999999999999988865555556655 99999999865
Q ss_pred CCCcccCHHHHHHHHHHHhhc-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 166 SNGFRITISALENAYQQAQTL-NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~-~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
+.+|.+|++.+++.+.+.... ..++++|++++|+||||...+ +++|+++|+++|+++|+||+|+.. .. + .
T Consensus 122 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g---~~--~-~ 192 (370)
T TIGR02539 122 HPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVG---RM--P-V 192 (370)
T ss_pred cccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccC---Cc--C-C
Confidence 557889999999998643211 136789999999999999865 667788888999999999999842 11 1 1
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCCh----------HHHHHHH
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSS----------QTQYLLS 314 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~----------~~q~~~~ 314 (464)
+.... +..++++||||+++ +|.|+||++++++ +.+.+.....++..+. ..+.++.
T Consensus 193 ~~~~~-------------~~di~v~s~sK~~~-~~g~~G~l~~~~~-~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (370)
T TIGR02539 193 SAKEI-------------GADFIVGSGHKSMA-ASGPCGVLGMSEE-WEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMM 257 (370)
T ss_pred CHHHc-------------CCCEEEeeCccccc-CCCCEEEEEECHH-HHhhhcccccCCccceeeeecccccccHHHHHH
Confidence 21111 34466799999998 6778999999554 5554444433322211 1444444
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee---cCCccEEEEEecCcccc--cCChhHHHHHHHHHHHhcC
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL---KSNAGLFCWVDMRHLLV--SNTFEAEKELWKKIIFEVG 389 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~g~f~~~~l~~~~~--~~~~~~~~~l~~~ll~~~g 389 (464)
.++.+. .++++..++.++.. +++.+.|+++|+++. ++.+ .|++++++.... ..+......+.+.| .++|
T Consensus 258 ~al~~~---~~~l~~~~~~~~~~-~~l~~~L~~~g~~~~~~~~s~t-~~v~~~~~~~~~~~~~~~~~~~~~~~~L-~e~G 331 (370)
T TIGR02539 258 ASFPHV---VERVKRWDEEVKKT-RWFVAELEDIGFIQLGQKPKEH-DLVKFETPGFHEIAQKHKRRGYFLYEEL-KKRG 331 (370)
T ss_pred HHHHHH---HHHHHHHHHHHHHH-HHHHHHHHhCCcEEEccCCCcC-ceEEEECCchhHHhhhhccccHHHHHHH-HhCC
Confidence 444321 33444444555554 589999999998753 4554 588888763100 00001122344554 5779
Q ss_pred eE-EeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 390 LN-ISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 390 I~-v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
|. ++++ .++++||++...+++++++++++|+++++++
T Consensus 332 I~~ir~~------~~~~iRis~~~~t~e~i~~l~~~L~~~~~~~ 369 (370)
T TIGR02539 332 IHGIRSG------QTKYFKLSVYGLTKEQVEYVVDSFEEIVEEY 369 (370)
T ss_pred CccccCC------cceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 97 6643 2468999973358999999999999988753
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=240.04 Aligned_cols=320 Identities=16% Similarity=0.107 Sum_probs=215.9
Q ss_pred ccc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHH
Q 037587 46 NQL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANET 124 (464)
Q Consensus 46 n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~ 124 (464)
|++ +++.+.+++.+.. .....|.+.....++++.++++++ ++++++++|+++++..
T Consensus 6 ~~~~~~~~v~~a~~~~~-------------~~~~~~~~~~~~~~l~~~~a~~~g----------~~~~~~~~~gt~a~~~ 62 (338)
T cd06502 6 TVTGPTPEMLEAMAAAN-------------VGDDVYGEDPTTAKLEARAAELFG----------KEAALFVPSGTAANQL 62 (338)
T ss_pred cCCCCCHHHHHHHHhcc-------------cCCcccCCCHHHHHHHHHHHHHhC----------CCeEEEecCchHHHHH
Confidence 444 5577777766531 111256545556788888888774 4567778888899999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChhhh---cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh-cCCceEEEEEeCCCC
Q 037587 125 LMFCLADPGDAFLLPTPYYPGFDRD---LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT-LNLKVKGVLITNPSN 200 (464)
Q Consensus 125 ~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~~vil~~P~N 200 (464)
++.+++++||.|+++.|+|..+... .... |++++.++.+ .+.+|++++++.+.+... ..+++++|+++||||
T Consensus 63 ~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n 138 (338)
T cd06502 63 ALAAHTQPGGSVICHETAHIYTDEAGAPEFLS-GVKLLPVPGE---NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTE 138 (338)
T ss_pred HHHHhcCCCCeEEEecCcceeeecCCcHHHHc-CceEEeecCC---CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecC
Confidence 9999999999999999998754432 2334 9999999864 256899999998864110 013678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc
Q 037587 201 PLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF 280 (464)
Q Consensus 201 PtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl 280 (464)
| |.+++.+++++|+++|+++|+++|+||+|........ . .++..+.. ...+++.|+||+||++|
T Consensus 139 ~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~--~-~~~~~~~~-----------~~d~~~~s~sK~~~~~~- 202 (338)
T cd06502 139 G-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAAL--G-VALKTYKS-----------GVDSVSFCLSKGGGAPV- 202 (338)
T ss_pred C-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhc--C-CCHHHHHh-----------cCCEEEEeccccCCCcc-
Confidence 7 6677999999999999999999999999864221111 1 12222211 22245789999999887
Q ss_pred EEEEEEecCHHHHHHHHHhc-cc---CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC
Q 037587 281 RVGMIYSNNERVVSAATKMS-SF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN 356 (464)
Q Consensus 281 RiG~l~~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 356 (464)
|+++..++.+.+.+.... .+ +..+++.+.++...|+...+ .+..+.+.+.++++.+.|+++|+.+.++.
T Consensus 203 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 275 (338)
T cd06502 203 --GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLW-----LRRLRHDHEMARRLAEALEELGGLESEVQ 275 (338)
T ss_pred --ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 554433555555554433 11 23456777778788876543 23334555667889999999888777777
Q ss_pred ccEEEEEecCcccccCChhHHHHHHHHHH--HhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 357 AGLFCWVDMRHLLVSNTFEAEKELWKKII--FEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 357 ~g~f~~~~l~~~~~~~~~~~~~~l~~~ll--~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
+| |+.++++.. . ....++...+. .++||.+.+.. .+++||+++. .++++++++++++++
T Consensus 276 ~~-~~~v~~~~~---~--~~~~~l~~~l~~~~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 276 TN-IVLLDPVEA---N--AVFVELSKEAIERRGEGVLFYAWG------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred CC-eEEEecCCc---c--HHHHHHHHHHHHhhhCCEEEEecC------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 77 666666421 1 11112333332 15699997652 2689999987 589999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=239.05 Aligned_cols=343 Identities=14% Similarity=0.112 Sum_probs=233.9
Q ss_pred CCCceEEeecccc-cc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc
Q 037587 34 NPSGIIQMGLAEN-QL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 34 ~~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~ 111 (464)
+..++|||+.+.. .+ +++.+.+++.+.... . ......|....|..++++++++++.+..+ .++.
T Consensus 31 ~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~-----~----~~~~~~~~~~~g~~~l~~~l~~~l~~~~g-----~~~~ 96 (385)
T TIGR01825 31 NGKEVINLSSNNYLGFADHPRLKEAAAQAIQQ-----Y----GVGAGAVRTIAGTLRLHEELEEKLAKFKK-----TEAA 96 (385)
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHH-----c----CCCCCccCcccCCcHHHHHHHHHHHHHhC-----CCcE
Confidence 4567899998742 33 455666655553211 0 01134576778899999999999988765 2456
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
|++++|+ +++..++.+++++||.|+++.|+|+.+...+... |+++..++ .+|++.+++.+.+. ..++++
T Consensus 97 i~~~sG~-~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~-g~~~~~~~-------~~d~~~l~~~l~~~--~~~~~~ 165 (385)
T TIGR01825 97 LVFQSGF-NTNQGVLSALLRKGDIVLSDELNHASIIDGLRLT-KATKKIYK-------HADMDDLDRVLREN--PSYGKK 165 (385)
T ss_pred EEECcHH-HHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhc-CCceEEeC-------CCCHHHHHHHHHhh--ccCCCe
Confidence 8888885 5666788889999999999999999887666655 87776653 36788888877642 123678
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+|++++++||||.+.+ +++|.++|+++|+++|+||+|..+.++.. ..... .... . ..++++++.||
T Consensus 166 ~v~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~--~~~~~-~~~~-~-------~~~~~i~~~s~ 231 (385)
T TIGR01825 166 LIVTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEA--GRGTV-HHFG-L-------EDKVDIQVGTL 231 (385)
T ss_pred EEEEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCC--CCccH-hhcC-C-------CcCCcEEEEec
Confidence 8888888999999876 67788999999999999999986555422 10111 1111 1 23678999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhc-cc--C-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMS-SF--G-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV 347 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 347 (464)
||++|++| ||+++++ .+.+.+.... .+ . ..++..+.++.++++... + ..+..+.+.++++++.+.|.+
T Consensus 232 sK~~~~~g---G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~---~-~~~~~~~~~~~~~~l~~~L~~ 303 (385)
T TIGR01825 232 SKAIGVVG---GYAAGHK-ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQ---R-SPELMERLWDNTRFFKAGLGK 303 (385)
T ss_pred cHHhhcCC---CEEecCH-HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHHHHHHHH
Confidence 99998766 9998854 4544444332 22 2 234466666666654321 1 123445566788999999998
Q ss_pred CCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEeec-CCHHHHHHHHHH
Q 037587 348 AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC--NEPGWFRICFAN-ITEETLQVALQR 424 (464)
Q Consensus 348 ~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Ris~~~-~~~e~l~~~l~~ 424 (464)
.|+++..++++ ++++.++.. ....+++..|+++ ||.++ +..|+. .+..++|++++. .+++++++++++
T Consensus 304 ~g~~~~~~~~~-~~~~~~~~~------~~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~ 374 (385)
T TIGR01825 304 LGYDTGGSETP-ITPVVIGDE------KAAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDA 374 (385)
T ss_pred cCCCCCCCCCC-EEEEEECCH------HHHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 89988877776 555554421 1223577777755 99985 444442 234689998864 799999999999
Q ss_pred HHHHHHhh
Q 037587 425 IKVFAQSC 432 (464)
Q Consensus 425 l~~~l~~~ 432 (464)
|++++++.
T Consensus 375 l~~~~~~~ 382 (385)
T TIGR01825 375 YEKVGKEL 382 (385)
T ss_pred HHHHHHHh
Confidence 99998754
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-28 Score=244.92 Aligned_cols=355 Identities=14% Similarity=0.159 Sum_probs=240.5
Q ss_pred CCCceEEeeccccc-c-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc
Q 037587 34 NPSGIIQMGLAENQ-L-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 34 ~~~~~i~l~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~ 111 (464)
+..++|||+.+... + .++.+.+++.+....- +...-..-..|.+..++.+|+++||++++ .++.
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~-----G~g~~g~r~~yg~~~~~~~Lee~La~~~~---------~~~~ 172 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKY-----GVGSCGPRGFYGTIDVHLDCETKIAKFLG---------TPDS 172 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHh-----CCCCcccCccccCHHHHHHHHHHHHHHhC---------CCCE
Confidence 44678999976332 2 3455666655532210 10000111246666678999999999986 4678
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc---CC
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL---NL 188 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~---~~ 188 (464)
|++++|.+ ++..++.+++++||.|++....|..+...+... |.+++.++.+ |.+.++..+++.... .+
T Consensus 173 i~~s~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls-~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~ 243 (481)
T PLN02822 173 ILYSYGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLS-RSTIVYFKHN-------DMESLRNTLEKLTAENKRKK 243 (481)
T ss_pred EEECCHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHc-CCeEEEECCC-------CHHHHHHHHHHHhhhhcccC
Confidence 99998887 578899999999999998887776666666655 8888888754 445566655543222 12
Q ss_pred ce-EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 189 KV-KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 189 ~~-~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
++ ++|++..++|+||.+.+ +++|+++|++||+++|+||+|....++..+ ..+.+... . ...+..++
T Consensus 244 ~~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G---~G~~e~~~-v------~~~~~dii 310 (481)
T PLN02822 244 KLRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSG---RGLSEHFG-V------PIEKIDII 310 (481)
T ss_pred CCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCC---CChHHHcC-C------CCCCCeEE
Confidence 34 67777778999999988 788899999999999999999855565331 11112111 0 01245688
Q ss_pred EcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc---ccC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS---SFG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~---~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
+.||||+||++| ||++++++ +.+.++... .++ +.++..+.++.++|+.. +. ..+.++.++++++++.+
T Consensus 311 ~~s~sKalg~~G---G~i~g~~~-ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l---~~-~~~~~~~l~~~~~~l~~ 382 (481)
T PLN02822 311 TAAMGHALATEG---GFCTGSAR-VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---ED-NPSVLAKLKENIALLHK 382 (481)
T ss_pred EecchhhhhhCC---eEEEcCHH-HHHHHHhcCCceeeccccCHHHHHHHHHHHHHH---Hh-CHHHHHHHHHHHHHHHH
Confidence 999999999889 99998554 555444322 222 12355666666666432 22 24677889999999999
Q ss_pred HHHhC-CCeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEEeCCC--CCCCC-CCCeEEEEeec-CCHH
Q 037587 344 GLKVA-GIRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNISPGS--SCHCN-EPGWFRICFAN-ITEE 416 (464)
Q Consensus 344 ~l~~~-g~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v~pg~--~f~~~-~~~~~Ris~~~-~~~e 416 (464)
.|.+. |+++..+.+++++++.++..... .+.....+++.+|++++||.+.|+. .|... .+.++|++++. .+++
T Consensus 383 ~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~e 462 (481)
T PLN02822 383 GLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTES 462 (481)
T ss_pred HHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHH
Confidence 99986 88887677788999998642111 1111234688888878899999763 33221 24579999876 6999
Q ss_pred HHHHHHHHHHHHHHhh
Q 037587 417 TLQVALQRIKVFAQSC 432 (464)
Q Consensus 417 ~l~~~l~~l~~~l~~~ 432 (464)
++++++++|++++.+.
T Consensus 463 dI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 463 DILKASESLKRVAASV 478 (481)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-28 Score=242.03 Aligned_cols=295 Identities=16% Similarity=0.220 Sum_probs=210.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCC-CCCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCCCC----hhhhcccCCCc
Q 037587 86 FPDAKKELVKLMARIRGNKVKF-DPNKLVLTAGSTAANETLMFCL----ADPGDAFLLPTPYYPG----FDRDLKWRPGV 156 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~-~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~~g~ 156 (464)
..++|+.+|++++ + ++++|++|+|+++++.+++.++ +++||+|++++|.|+. +...++.. |+
T Consensus 65 ~~~~r~~la~~~g--------~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~ 135 (401)
T PRK10874 65 YEAAREQVAQLLN--------APDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQT-GA 135 (401)
T ss_pred HHHHHHHHHHHcC--------CCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHh-CC
Confidence 4678888888876 5 6889999999999999999998 3789999999999865 33444555 99
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccccc
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF 236 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~ 236 (464)
+++.++++. ++.+|++++++.+.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+
T Consensus 136 ~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~ 204 (401)
T PRK10874 136 KVVKLPLGA--DRLPDVDLLPELITP------RTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHF 204 (401)
T ss_pred EEEEEecCC--CCcCCHHHHHHhcCc------CcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccccc
Confidence 999999863 567899999998864 7899999999999999986 56788888899999999999973222
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc----------------
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS---------------- 300 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~---------------- 300 (464)
. .++..+ +..+++.|++|.+|.+| +||++++++ +.+.+....
T Consensus 205 ~------~~~~~~-------------~~d~~~~s~~K~~gp~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (401)
T PRK10874 205 P------ADVQAL-------------DIDFYAFSGHKLYGPTG--IGVLYGKSE-LLEAMSPWQGGGKMLTEVSFDGFTP 262 (401)
T ss_pred c------CCchhc-------------CCCEEEEecccccCCCc--cEEEEEchH-HHhcCCCeecCCcceEeeccCccCC
Confidence 1 121111 34577899999998777 599988554 333222110
Q ss_pred -------ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccccC
Q 037587 301 -------SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSN 372 (464)
Q Consensus 301 -------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~ 372 (464)
..++.+...+.++.++++.-. +......+++.++.++++.+.|+++ |+.+..+..+.++++.++..
T Consensus 263 ~~~~~~~e~Gt~~~~~~~al~~al~~l~--~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~---- 336 (401)
T PRK10874 263 QSAPWRFEAGTPNVAGVIGLSAALEWLA--DIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV---- 336 (401)
T ss_pred CCChhhccCCCcCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc----
Confidence 012334445555555543211 1113345566677778888888887 88777555555666666531
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSSCHC------NEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
. ..++...| .++||.|++|..+.. ...+++|||++. .++++++.+++.|++++++.
T Consensus 337 --~-~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 337 --H-HSDLVTLL-AEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred --C-HHHHHHHH-HHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 1 12455544 678999999886642 235799999987 78999999999999988753
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=239.23 Aligned_cols=335 Identities=14% Similarity=0.167 Sum_probs=217.2
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
..+|+|+.|+++.|++.+.+++.... ......|+++ ...+|++++|++++ .+ .++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~a~~~~~------------~~~~~~~~~~-~~~~l~~~la~~~~--------~~--~~~~~ 61 (353)
T PLN02721 5 SRVVDLRSDTVTKPTDAMRAAMANAE------------VDDDVLGYDP-TALRLEEEMAKIFG--------KE--AALFV 61 (353)
T ss_pred hhhhhhhcccccCCCHHHHHHHHhcc------------CCCcccCCCH-HHHHHHHHHHHHhC--------Cc--eeEEe
Confidence 35689999999988777777766420 0111233332 26899999999986 22 24455
Q ss_pred CChHHHHHHHHHHhcC-CCCeEEEcCCCCCChhh---hcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC-Cce
Q 037587 116 AGSTAANETLMFCLAD-PGDAFLLPTPYYPGFDR---DLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN-LKV 190 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~-~gd~Vlv~~p~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~ 190 (464)
+++++++..++.+++. +||.|++++|+|..... .+... |++++.++.+ .++.+|++.+++.+++....+ +++
T Consensus 62 ~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~ 138 (353)
T PLN02721 62 PSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGISTLG-GVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTT 138 (353)
T ss_pred cCccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhhhc-CceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcc
Confidence 5555556677777777 99999999999854443 34444 9999998875 356789999999987421111 378
Q ss_pred EEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 191 KGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 191 ~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
++|+++++ |||||.++|.+++++|+++|+++|+++|+||+|....+... . .+...+.. ....++.
T Consensus 139 ~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~--~-~~~~~~~~-----------~~d~~~~ 204 (353)
T PLN02721 139 RLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVAL--G-VPVHRLVK-----------AADSVSV 204 (353)
T ss_pred eEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhh--C-CCHHHHhh-----------hCCEEEE
Confidence 89999775 78999999999999999999999999999999862111101 1 12222222 1223455
Q ss_pred CCCcCCCCCccEEEE-EEecCHHHHHHHHHhcccC--CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGM-IYSNNERVVSAATKMSSFG--LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 270 S~SK~~g~~GlRiG~-l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
|+||.++. ++|+ +++ ++.+.+.+....... ..+...+.++..+.. + +++.+..++ ..++++.+.+.|+
T Consensus 205 s~sK~l~~---~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~~~~~~-~~~~~~~l~~~L~ 275 (353)
T PLN02721 205 CLSKGLGA---PVGSVIVG-SKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA---L-QENVPKLED-DHKKAKLLAEGLN 275 (353)
T ss_pred ecccccCC---ceeeEEec-CHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH---H-HHHHHHHHH-HHHHHHHHHHHHH
Confidence 89999863 3576 455 455555444333322 122222222222211 1 222333333 3456678999998
Q ss_pred hC-CCee--ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHH
Q 037587 347 VA-GIRC--LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVAL 422 (464)
Q Consensus 347 ~~-g~~~--~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 422 (464)
++ ++.+ .++.++ |+|++++.... ....+++..|. ++||.++|+. .+++|++++. .+++++++++
T Consensus 276 ~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~L~-~~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~ 343 (353)
T PLN02721 276 QIKGLRVNVAAVETN-IVYFDITDGSR----ITAEKLCKSLE-EHGVLLMPGN------SSRIRVVTHHQISDSDVQYTL 343 (353)
T ss_pred hCCCcEEecCCccce-EEEEEccCCcc----ccHHHHHHHHH-hCCcEEecCC------CceEEEEecCcCCHHHHHHHH
Confidence 87 6744 445554 79999874210 11235677775 7899999874 4589999974 7899999999
Q ss_pred HHHHHHHHh
Q 037587 423 QRIKVFAQS 431 (464)
Q Consensus 423 ~~l~~~l~~ 431 (464)
++|++++..
T Consensus 344 ~~l~~~~~~ 352 (353)
T PLN02721 344 SCFQQAALT 352 (353)
T ss_pred HHHHHHhhc
Confidence 999988753
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=239.20 Aligned_cols=295 Identities=15% Similarity=0.186 Sum_probs=207.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCC-CCCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCCCC----hhhhcccCCCc
Q 037587 86 FPDAKKELVKLMARIRGNKVKF-DPNKLVLTAGSTAANETLMFCL----ADPGDAFLLPTPYYPG----FDRDLKWRPGV 156 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~-~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~~g~ 156 (464)
..++|+.+|++++ + ++++|++|+|+++++.+++.++ +++||+|++++|+|+. +...++.. |+
T Consensus 62 ~~~~r~~la~~~g--------~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~-g~ 132 (398)
T TIGR03392 62 YELARQQVARFLN--------APDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQT-GA 132 (398)
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHc-Cc
Confidence 4568889998886 4 4789999999999999999987 4789999999999875 33344555 99
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccccc
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF 236 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~ 236 (464)
+++.++++. ++.+|++.+++.+.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+
T Consensus 133 ~v~~v~~~~--~~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~ 201 (398)
T TIGR03392 133 KVVKLPIGA--DLLPDIRQLPELLTP------RTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHG 201 (398)
T ss_pred EEEEEecCC--CCCcCHHHHHHHhcc------CceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCC
Confidence 999999864 456899999998864 7899999999999999986 56688889999999999999973221
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc----------------
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS---------------- 300 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~---------------- 300 (464)
. .++..+ +..+++.|++|.+|.+| +||++++++ +.+.+....
T Consensus 202 ~------~~~~~~-------------~~d~~~~s~~K~~gp~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (398)
T TIGR03392 202 P------PDVQAL-------------DIDFYAFSGHKLYGPTG--IGVLYGKTE-LLEAMPPWQGGGKMLSHVSFDGFIP 259 (398)
T ss_pred C------CChhhc-------------CCCEEEEecccccCCCc--eEEEEEcHH-HHhhCCCeecCCceEeecccccccc
Confidence 1 122111 34567789999998666 899998554 333222110
Q ss_pred -------ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccccC
Q 037587 301 -------SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSN 372 (464)
Q Consensus 301 -------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~ 372 (464)
..++.+.....++.++++--. +...++.+++.++.++++.+.|.++ |+.+..+..+.++++.++.. .
T Consensus 260 ~~~~~~~e~GT~~~~~~~a~~~al~~l~--~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-~-- 334 (398)
T TIGR03392 260 QAVPHRFEAGTPNIAGVIGLSAALEWLT--DIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-H-- 334 (398)
T ss_pred CCChhhccCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-C--
Confidence 011233333344444333110 1113345566666777888888876 77776544455676666531 1
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSSCHC------NEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
..++...| .++||.|++|..+.. +.++++|||++. .++++++.+++.|++++++.
T Consensus 335 ----~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 335 ----HSDLAALL-AESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred ----HHHHHHHH-HhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 12455554 678999999886542 225799999977 78999999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-28 Score=242.75 Aligned_cols=342 Identities=14% Similarity=0.112 Sum_probs=224.1
Q ss_pred ceEEeecc-ccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 37 GIIQMGLA-ENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 37 ~~i~l~~~-~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
..++|+.| .++++ +|.+.+++.+..+.. +.........|+......+|++.||++++ .++.|++
T Consensus 47 ~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~-----~~~~~~s~~~~~~~~~~~~Le~~la~~~g---------~~~~i~~ 112 (410)
T PRK13392 47 RVTIWCSNDYLGMGQHPDVIGAMVDALDRY-----GAGAGGTRNISGTSHPHVLLERELADLHG---------KESALLF 112 (410)
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHHc-----CCCCchhhhcccChHHHHHHHHHHHHHhC---------CCCEEEE
Confidence 46777764 55553 466666665542210 00000011123332235788899998885 3567888
Q ss_pred eCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 115 TAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+ +++..++..+.. +|+.|+++.+.|..+...+... |+++..++.+ |.+.+++.++.. ..+++++
T Consensus 113 ~sG~-~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~-g~~~~~~~~~-------d~~~l~~~l~~~--~~~~t~~ 181 (410)
T PRK13392 113 TSGY-VSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRS-GAEKQVFRHN-------DLADLEEQLASV--DPDRPKL 181 (410)
T ss_pred CcHH-HHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHc-CCeEEEEeCC-------CHHHHHHHHHhc--cCCCCEE
Confidence 8775 566666666643 8898888877777666666655 8887766421 455666666532 1237889
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++|+||||.+++ +++|.++|+++++++|+||+|....++..+ ..+..... . .....++++|||
T Consensus 182 v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g---~g~~~~~~-~-------~~~~div~~tls 247 (410)
T PRK13392 182 IAFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARG---GGIAERDG-L-------MDRIDMIQGTLA 247 (410)
T ss_pred EEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCC---Cchhhhcc-C-------CCCCcEEEEECh
Confidence 999999999999987 667788888999999999999844444321 11111111 0 112237789999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhccc---C-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSF---G-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~---~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
|+||++| ||++++ +.+.+.+++.... . ..+++.+.++.++|+.... ....++.++++++++.+.|++.
T Consensus 248 K~~g~~G---G~~~~~-~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~----~~~~~~~~~~~~~~l~~~L~~~ 319 (410)
T PRK13392 248 KAFGCLG---GYIAAS-ADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKT----SQTERDAHQDRVAALKAKLNAN 319 (410)
T ss_pred Hhhhccc---chhhcC-HHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHc
Confidence 9999888 999884 4555555554432 1 2344667777777764332 2345577788889999999999
Q ss_pred CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHHHH
Q 037587 349 GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFAN-ITEETLQVALQRIK 426 (464)
Q Consensus 349 g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~~l~~l~ 426 (464)
|+++.++++++ +.+.++.. ....+++.+|++++||.++++..... .+.+++||++.. .++++++.++++|+
T Consensus 320 g~~~~~~~~~~-~~i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~ 392 (410)
T PRK13392 320 GIPVMPSPSHI-VPVMVGDP------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALV 392 (410)
T ss_pred CCCCCCCCCCE-EEEEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 99888888874 44444321 12335777787778999998654322 234689999965 58999999999999
Q ss_pred HHHHhh
Q 037587 427 VFAQSC 432 (464)
Q Consensus 427 ~~l~~~ 432 (464)
+++++.
T Consensus 393 ~~~~~~ 398 (410)
T PRK13392 393 AIWDRL 398 (410)
T ss_pred HHHHHc
Confidence 987654
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=223.17 Aligned_cols=350 Identities=17% Similarity=0.269 Sum_probs=254.4
Q ss_pred CCCCCCCCCceEEeeccc--cccc----HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHc
Q 037587 28 PYDQLHNPSGIIQMGLAE--NQLS----FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIR 101 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~--n~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~ 101 (464)
.|..+..+.. |||+++. |... .+.++++-+...+ -.....|-+..|.+++++++++.+-
T Consensus 19 ~f~~D~R~~K-VNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~-----------~~~~k~Yl~i~G~~~f~~~~~~llF--- 83 (396)
T COG1448 19 AFKADPRPNK-VNLGIGVYKDEDGKTPVLRAVKKAEKRLLE-----------QEKTKNYLPIEGLPEFLEAVQKLLF--- 83 (396)
T ss_pred HHhcCCCcCe-eeeeeeeeeCCCCCcchhHHHHHHHHHhhc-----------cccccccCCcCCcHHHHHHHHHHhc---
Confidence 3555555544 9999873 2222 2445554444321 1345679999999999999999973
Q ss_pred CCCCC-CCCCc--EEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHH
Q 037587 102 GNKVK-FDPNK--LVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISAL 176 (464)
Q Consensus 102 ~~~~~-~~~~~--i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 176 (464)
|...+ +..+. -+=|.|+|.|+......+. .+..+|.+++|+|+.+..++... |.++..+|+-....-.+|.+.+
T Consensus 84 G~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~a-Gl~v~~Y~Yyd~~~~~~df~~m 162 (396)
T COG1448 84 GADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAA-GLEVETYPYYDAETKGLDFDGM 162 (396)
T ss_pred CCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhc-CCceeeeeccccccccccHHHH
Confidence 21111 22333 3458999999998877663 45677999999999999999877 9999999975444556899999
Q ss_pred HHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCc
Q 037587 177 ENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNI 255 (464)
Q Consensus 177 ~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~ 255 (464)
.+.+++++ .-.+|++--+ |||||.-++.++|++|+++.++.+.+.+.|-+|.++.-+-. .....+..++...
T Consensus 163 la~L~~a~----~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~Gle-eDa~~lR~~a~~~-- 235 (396)
T COG1448 163 LADLKTAP----EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLE-EDAYALRLFAEVG-- 235 (396)
T ss_pred HHHHHhCC----CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchH-HHHHHHHHHHHhC--
Confidence 99988752 2333444333 99999999999999999999999999999999998432211 1223333333321
Q ss_pred CCCCCCCCcEEEEcCCCcCCCCCccEEEEEE--ecCHHHHHHH----H--HhcccCCCChHHHHHHHHHcCCchhhHHH-
Q 037587 256 DESDDLWSRIHIVYSLSKDFSMPGFRVGMIY--SNNERVVSAA----T--KMSSFGLVSSQTQYLLSRMLSDKKFTCNY- 326 (464)
Q Consensus 256 ~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~--~~~~~~~~~~----~--~~~~~~~~s~~~q~~~~~~l~~~~~~~~~- 326 (464)
.-+++..||||.||+-|-|+|.+. +.++.....+ + .+..+.+++.....+++.+|+++++...|
T Consensus 236 -------~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~ 308 (396)
T COG1448 236 -------PELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWE 308 (396)
T ss_pred -------CcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHH
Confidence 348889999999999999999874 4444433322 1 12345556667888999999998764444
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 327 --MKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 327 --~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
+..+|.++.++|..|.+.|++. .+.++..+.|||.+..++. +...+|.+++||++..
T Consensus 309 ~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~-----------~QV~rLree~~IY~v~------ 371 (396)
T COG1448 309 QELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSP-----------EQVDRLREEFGIYLVA------ 371 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCH-----------HHHHHHHHhccEEEec------
Confidence 4457899999999999999984 4778889999999886653 3567888899999873
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
.| |||++.+++..++.+.++|.++
T Consensus 372 --sG--Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 372 --SG--RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred --CC--eeeeccCChhhHHHHHHHHHhh
Confidence 33 9999999999999999998875
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=242.85 Aligned_cols=310 Identities=15% Similarity=0.131 Sum_probs=215.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEE
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEI 158 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~ 158 (464)
.|+...+..+|++++|++++ .++.|++++|... +..++.+++++||.|++++|+|..+...++.. |+++
T Consensus 141 ~~g~~~~~~ele~~lA~~~g---------~~~ai~~~~G~~a-n~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~-Ga~v 209 (489)
T PLN02483 141 DGGTTKLHRELEELVARFVG---------KPAAIVFGMGYAT-NSTIIPALIGKGGLIISDSLNHNSIVNGARGS-GATI 209 (489)
T ss_pred ccCCcHHHHHHHHHHHHHhC---------CCcEEEECCHHHH-HHHHHHHhCCCCCEEEEcchhhHHHHHHHHHc-CCeE
Confidence 47766778999999999996 4667888777554 44777889999999999999999998888876 9999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhc------CCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTL------NLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~------~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
+.++.+ |.+.+++.+++.... .+..++++++++ .|++|... ++++|+++|+++|+++|+||+|
T Consensus 210 ~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~---~l~~I~~la~~~~~~livDEa~ 279 (489)
T PLN02483 210 RVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC---KLPEIVAVCKKYKAYVYLDEAH 279 (489)
T ss_pred EEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc---CHHHHHHHHHHcCCEEEEECcC
Confidence 998843 467777766543211 112356666666 59999885 5788889999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc---cC-CCCh
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS---FG-LVSS 307 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~---~~-~~s~ 307 (464)
+...++..+ ....++.. . +..+.+++++||||+||++| ||++++ +.+.+.++.... +. ..++
T Consensus 280 s~g~~G~~G---~g~~~~~~-v------~~~~~dI~~~SfSKs~g~~G---G~i~~~-~~li~~l~~~~~~~~~~~~~~p 345 (489)
T PLN02483 280 SIGAVGKTG---RGVCELLG-V------DPADVDIMMGTFTKSFGSCG---GYIAGS-KELIQYLKRTCPAHLYATSMSP 345 (489)
T ss_pred ccCccCCCC---CchHHhcC-C------CcccCcEEEEecchhcccCc---eEEEcC-HHHHHHHHHhCccccccCCcCH
Confidence 743333221 11222211 0 12357799999999999877 999985 445555554321 22 2233
Q ss_pred -HHHHHHHHHc---CCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHH
Q 037587 308 -QTQYLLSRML---SDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKK 383 (464)
Q Consensus 308 -~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ 383 (464)
..|. +.+.+ ...+- .+...++++.++++++++.+.|+++|+.+..+.++..+|+.+.... ...+++..
T Consensus 346 ~~~~~-~~aaL~~l~~~~g-~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~l~l~~~~------~~~~~~~~ 417 (489)
T PLN02483 346 PAVQQ-VISAIKVILGEDG-TNRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPA------KIPAFSRE 417 (489)
T ss_pred HHHHH-HHHHHHHHHhCcc-ccchHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEEEEECCHH------HHHHHHHH
Confidence 3333 33333 21110 1224455778999999999999999988876666667777654321 12257777
Q ss_pred HHHhcCeEEeCCCCCC--CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 384 IIFEVGLNISPGSSCH--CNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~--~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
|+ ++||.|.| ..|. +...+++||+++. .++|++++++++|+++++..+
T Consensus 418 Ll-~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~ 468 (489)
T PLN02483 418 CL-KQNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVG 468 (489)
T ss_pred HH-HCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 76 56999997 4443 2234789999986 789999999999999988766
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=234.44 Aligned_cols=340 Identities=14% Similarity=0.120 Sum_probs=221.5
Q ss_pred CCCceEEeeccccc-c-cHHHHHHHHHhhhhhHHhhhccccccc-ccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 34 NPSGIIQMGLAENQ-L-SFDLLESWLASNQEAVELKRNGESLFR-ELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 34 ~~~~~i~l~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
....+|||+.+.|. + +++.+.+++.+.... .. ....|....|...+++.+++.+.+.++ .++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-----~~~ 101 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARR----------YGAGSGGSRLVTGNSPAHEALEEELAEWFG-----AER 101 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHh----------cCCCCCCcCcccCCcHHHHHHHHHHHHHhC-----CCc
Confidence 56788999998763 2 446677766654211 00 011222223434444444444444333 245
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
.|++++ +++++..++.+++++||.|+++.|+|+.+...+... |++++.++. .|++.+++.++.. .++.
T Consensus 102 ~i~~~~-g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~i~~~---~~~~ 169 (385)
T PRK05958 102 ALLFSS-GYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLS-RARVRRYPH-------NDVDALEALLAKW---RAGR 169 (385)
T ss_pred EEEECc-HHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhc-CCceEEeCC-------CCHHHHHHHHHhc---cCCC
Confidence 555555 555666677888999999999999999888777765 888888764 3788888887641 1134
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
.++++.+++||||...+ +++|+++|+++|+++|+||+|....+...+..+.....+ . ..++++++.|
T Consensus 170 ~lvi~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~-~---------~~~~~i~~~s 236 (385)
T PRK05958 170 ALIVTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGL-A---------GEPDVILVGT 236 (385)
T ss_pred eEEEEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCC-C---------CCCceEEEEe
Confidence 55566677999998754 778889999999999999999754443221011111111 1 2367899999
Q ss_pred CCcCCCCCccEEEEEEecCHHHHHHHHHhc-ccC---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 271 LSKDFSMPGFRVGMIYSNNERVVSAATKMS-SFG---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
|||.||++| ||++++ +.+.+.+.... .+. ..++..+.++.++++.... ....++.+.++++++.+.|+
T Consensus 237 ~sK~~~~~G---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~----~~~~~~~~~~~~~~l~~~L~ 308 (385)
T PRK05958 237 LGKALGSSG---AAVLGS-ETLIDYLINRARPFIFTTALPPAQAAAARAALRILRR----EPERRERLAALIARLRAGLR 308 (385)
T ss_pred chhhcccCC---cEEEcC-HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 999999777 999885 44544443322 221 2334444445555543221 13456778888899999999
Q ss_pred hCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHH
Q 037587 347 VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFAN-ITEETLQVALQR 424 (464)
Q Consensus 347 ~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~~l~~ 424 (464)
+.|+++.++.++ |+|+.++.. ....+++..+. ++||.|.++..+.. .+.+++||+++. .++++++.++++
T Consensus 309 ~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~ 380 (385)
T PRK05958 309 ALGFQLMDSQSA-IQPLIVGDN------ERALALAAALQ-EQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEA 380 (385)
T ss_pred HcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHH-HCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 888887777665 778887631 12335777775 67999998654432 235689999975 689999999999
Q ss_pred HHHHH
Q 037587 425 IKVFA 429 (464)
Q Consensus 425 l~~~l 429 (464)
|++++
T Consensus 381 l~~~~ 385 (385)
T PRK05958 381 LAEAL 385 (385)
T ss_pred HHhcC
Confidence 98753
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=221.48 Aligned_cols=325 Identities=18% Similarity=0.258 Sum_probs=216.4
Q ss_pred cccccC-CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHH-HHHHH-HHh----cC--------CCCeEEEc
Q 037587 75 RELALF-QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAA-NETLM-FCL----AD--------PGDAFLLP 139 (464)
Q Consensus 75 ~~~~~Y-~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~a-l~~~~-~~l----~~--------~gd~Vlv~ 139 (464)
.+..+| +...|.+++|+-.|+.++ ++++||+++..|+-. ++-++ .++ .+ +.-+.|+|
T Consensus 59 ~D~RNY~G~l~Gipe~r~l~a~llg--------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP 130 (425)
T PF12897_consen 59 TDCRNYPGGLDGIPEARELFAELLG--------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP 130 (425)
T ss_dssp EBTTSS-S-SS--HHHHHHHHHHHT--------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred ccccCCCCccCChHHHHHHHHHHhC--------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence 356789 888999999999999997 789999987665543 33322 222 11 12479999
Q ss_pred CCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEe-CCCCCCCCCCCHHHHHHHHHH-
Q 037587 140 TPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT-NPSNPLGTAMTHQELNHLINF- 217 (464)
Q Consensus 140 ~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~-~P~NPtG~~~s~~~l~~i~~~- 217 (464)
.|+|..+..+.+.. |++.++||+.+++ +|.+.+++.+.+ ++.+|.+++. --+||||.+||.+.+++++.+
T Consensus 131 vPGYDRHFai~E~~-Giemi~VpM~~dG---PDmD~Ve~LV~~----D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~ 202 (425)
T PF12897_consen 131 VPGYDRHFAITEHF-GIEMIPVPMTEDG---PDMDMVEELVAE----DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMK 202 (425)
T ss_dssp ES--HHHHHHHHHC-T-EEEEEEEETTE---E-HHHHHHHTHT----STTEEEEEE-SSS-TTT-----HHHHHHHHHS-
T ss_pred CCCchHHHHHHHhh-CcEEEecCCCCCC---CCHHHHHHHHhc----CCccceEEeCCCccCCCCccCCHHHHHHHhcCC
Confidence 99999999999887 9999999998654 899999998753 5688987654 238999999999999999988
Q ss_pred HhhCCeEEEEeccccccccC-CCCC-CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHH
Q 037587 218 SKSKRIHIVSDEIYSGTVFD-SPSS-SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA 295 (464)
Q Consensus 218 ~~~~~~~lI~Deay~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~ 295 (464)
....+.-|+.|.+|+-..+. ..+. ....+.....+- +++++++.+.|+||+. +||-+|+++.++.+.+...
T Consensus 203 ~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~A------Gnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~ 275 (425)
T PF12897_consen 203 TAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKA------GNPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWI 275 (425)
T ss_dssp -SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHT------T-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHH
T ss_pred cCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHc------CCCCeEEEEecccccc-cCCcceeeeecCHHHHHHH
Confidence 34579999999999866662 2211 123566666543 4789999999999997 5999999999977766665
Q ss_pred HHHhccc-CCCChHHHHHHHHHcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHhC-C-----CeeecCCccEEEEEecCc
Q 037587 296 ATKMSSF-GLVSSQTQYLLSRMLSDKK-FTCNYMKENRKRLRKRKEMLVSGLKVA-G-----IRCLKSNAGLFCWVDMRH 367 (464)
Q Consensus 296 ~~~~~~~-~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~-g-----~~~~~~~~g~f~~~~l~~ 367 (464)
.+.+..- ....-+.|..-..++.+.+ -+++|+++.++.++-+.+.+.+.|++. | .+|..|.||+|+++++.+
T Consensus 276 ~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~ 355 (425)
T PF12897_consen 276 KKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD 355 (425)
T ss_dssp HHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST
T ss_pred HHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC
Confidence 4443322 2356689999999999976 668999999999999988888888764 3 488899999999999986
Q ss_pred ccccCChhHHHHHHHHHHHhcCeEEeC-CCCCCCC---CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 368 LLVSNTFEAEKELWKKIIFEVGLNISP-GSSCHCN---EPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 368 ~~~~~~~~~~~~l~~~ll~~~gI~v~p-g~~f~~~---~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
... .-...+.++.||.+.| |..|... .+..+||+.+.++.++++.+++.+..+++
T Consensus 356 G~A--------krvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 356 GTA--------KRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp T-H--------HHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred ChH--------HHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 432 2345667899999998 6666642 24579999998899999999999887764
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=238.25 Aligned_cols=342 Identities=15% Similarity=0.135 Sum_probs=221.3
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||..+ .+.+. .+.+.+++.+.... .. +....+..++++++++++.+..+
T Consensus 32 ~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~-------------~~-~~~~~~~~~~~~~la~~l~~~~~-- 95 (396)
T PRK02627 32 RLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAK-------------LI-HTSNLYYIEPQEELAEKLVELSG-- 95 (396)
T ss_pred EEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhh-------------cc-ccccccCCHHHHHHHHHHHhhcC--
Confidence 4444456778999875 33443 36677766654211 11 11112236888888888876533
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcCCC-------CeEEEcCCCCCChhhhcccCCCcEEEEEecCC-CCCc----ccC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLADPG-------DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS-SNGF----RIT 172 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~~g-------d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~-~~~~----~~d 172 (464)
.+++++|+|+++++..+++++...+ ++|++..++|.++........+.........+ ..++ ..|
T Consensus 96 ----~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (396)
T PRK02627 96 ----MDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFND 171 (396)
T ss_pred ----CCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCC
Confidence 4799999999999999999765433 67999999998775543333122211111110 0121 127
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEeCCCCCCC-CCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhh
Q 037587 173 ISALENAYQQAQTLNLKVKGVLITNPSNPLG-TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVM 251 (464)
Q Consensus 173 ~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG-~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~ 251 (464)
++.+++.+.+ ++++|++..++||+| ..++.+.+++|.++|+++|+++|+||+|.++.+.+. . .+. ....
T Consensus 172 ~~~l~~~i~~------~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~--~-~~~-~~~~ 241 (396)
T PRK02627 172 IEALKAAITD------KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK--L-FAY-QHYG 241 (396)
T ss_pred HHHHHHhcCC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc--e-eee-hhcC
Confidence 8888888743 789999988899999 688999999999999999999999999997544332 1 111 1111
Q ss_pred ccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHHcCCchhhHHHHHH
Q 037587 252 DRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKE 329 (464)
Q Consensus 252 ~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 329 (464)
..+. +.||||.++ +|+|+||++++++ +.+.+.. ....+..+++.|.++.++++.... .++.++
T Consensus 242 ---------~~pd---i~t~sK~~~-~G~rig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~ 306 (396)
T PRK02627 242 ---------IEPD---IMTLAKGLG-GGVPIGAVLAKEK-VADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLEN 306 (396)
T ss_pred ---------CCCC---EEEEcchhh-CCcccEEEEEcHH-HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHH
Confidence 1122 347999999 9999999999544 5454432 223345788899998888764321 222333
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 037587 330 NRKRLRKRKEMLVSGLKVAGI-RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRI 408 (464)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~~g~-~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ri 408 (464)
.++..+..++.+.+.+.+++. .... ..|+|+|++++. ...+++..+++ +||.+.|+. .+++||
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~i~~~~--------~~~~~~~~l~~-~Gv~v~~~~------~~~lRi 370 (396)
T PRK02627 307 AAEVGEYLRAKLRELLEKYPGIKEVR-GLGLMIGIELDR--------PAAEIVKKALE-KGLLINVTG------DNVLRL 370 (396)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeeec-cCcEEEEEEecC--------cHHHHHHHHHH-CCeEEeecC------CCEEEE
Confidence 333333333444444443422 2223 346789998832 12357777765 599999863 367999
Q ss_pred Eeec-CCHHHHHHHHHHHHHHHHh
Q 037587 409 CFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 409 s~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+++. .+++++++++++|++++++
T Consensus 371 ~~~~~~~~~~i~~~~~~l~~~l~~ 394 (396)
T PRK02627 371 LPPLIISKEEIDEAVDRLEEVLKE 394 (396)
T ss_pred ECCcccCHHHHHHHHHHHHHHHHh
Confidence 9763 6899999999999998865
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=233.62 Aligned_cols=348 Identities=14% Similarity=0.116 Sum_probs=228.3
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA 116 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~ 116 (464)
..|+|..++|.+++ .+.+++....... .. .+ ......|....+.+.+++.+++.+.+.+| ++..+|++++
T Consensus 20 ~~~~~~~~~~~~~~-~v~~a~~~~~~~~-~~-~g---~~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~v~~~s 89 (402)
T cd00378 20 ETLELIASENFTSP-AVMEAMGSDLTNK-YA-EG---YPGKRYYGGCEYVDEIEDLAIERAKKLFG----AEYANVQPHS 89 (402)
T ss_pred hCeeeeccCCcCCH-HHHHHhccccccc-cc-CC---CCCCcccCCchHHHHHHHHHHHHHHHHhC----CCceeeecCC
Confidence 35888888877755 4555544321000 00 00 01122354555667788877777766665 4455566665
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh-----cccCCCcEEEEEecCCC-CCcccCHHHHHHHHHHHhhcCCce
Q 037587 117 GSTAANETLMFCLADPGDAFLLPTPYYPGFDRD-----LKWRPGVEIVPIHCSSS-NGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 117 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+++++..++.+++++||+|+++.|+|+.+... +... |.++..++++.+ +++.+|++.+++.+.+ +++
T Consensus 90 -gt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~id~~~l~~~i~~-----~~~ 162 (402)
T cd00378 90 -GSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSAS-GKLFESVPYGVDPETGLIDYDALEKMALE-----FKP 162 (402)
T ss_pred -cHHHHHHHHHHhcCCCCEEEEecCccCcccccccccccccc-ceeEEEecCCcCcccCCcCHHHHHHHHHh-----CCC
Confidence 57999999999999999999999999876443 4444 887777776544 2688999999998864 268
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccc-cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIY-SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++++++|+||+. .++++|+++|+++|+++|+|++| .++.+.+. .... + . ...++++
T Consensus 163 ~~v~~~~~~~~~~-----~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~--~~~~---~-~-----------~~dv~~~ 220 (402)
T cd00378 163 KLIVAGASAYPRP-----IDFKRFREIADEVGAYLLVDMAHVAGLVAGGV--FPNP---L-P-----------GADVVTT 220 (402)
T ss_pred CEEEecCcccCCC-----cCHHHHHHHHHhcCCEEEEEccchhhhhhccc--CCCc---c-c-----------CCcEEEe
Confidence 8889889988753 24788999999999999999996 43323221 1111 1 0 1126789
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC--CCCh-HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG--LVSS-QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
|+||++ +|+|.||++++++.+.+.+......+ ..+. ..+.++..++.. ......++.++.+.++++++.+.|.
T Consensus 221 s~sK~l--~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~~~l~~~L~ 296 (402)
T cd00378 221 TTHKTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKE--ALEPEFKAYAKQVVENAKALAEALK 296 (402)
T ss_pred ccccCC--CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 78999999997745655554433222 1222 222222222221 1111355667778889999999999
Q ss_pred hCCCeee-cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC----CCCCCeEEEEeecC-----CHH
Q 037587 347 VAGIRCL-KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH----CNEPGWFRICFANI-----TEE 416 (464)
Q Consensus 347 ~~g~~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~----~~~~~~~Ris~~~~-----~~e 416 (464)
+.|+.+. .+.+++|+|++++.... . . +.+.++++++||.+.++.... ...+.++||++... +++
T Consensus 297 ~~g~~~~~~~~~~~~v~v~~~~~~~----~-~-~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~ 370 (402)
T cd00378 297 ERGFKVVSGGTDNHLVLVDLRPKGI----T-G-KAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEE 370 (402)
T ss_pred hCCCeEeecCCCCeEEEEeCCccCC----C-H-HHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHH
Confidence 9998876 45678899999974211 1 1 133455678899998643211 11346799998653 489
Q ss_pred HHHHHHHHHHHHHHhhC
Q 037587 417 TLQVALQRIKVFAQSCN 433 (464)
Q Consensus 417 ~l~~~l~~l~~~l~~~~ 433 (464)
+++.+++.|++++++.+
T Consensus 371 di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 371 EMEEIADFIARALKDAE 387 (402)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999887766
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=231.99 Aligned_cols=298 Identities=13% Similarity=0.159 Sum_probs=203.3
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..++++.+|++++ + +++++|+|+++++..++.+++++||.|+++.++|......+... |++++.++.+.
T Consensus 46 ~~~l~~~la~~~g--------~--~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~ 114 (361)
T cd06452 46 IKDFHHDLAEFLG--------M--DEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERA-GLNVREVPNTG 114 (361)
T ss_pred HHHHHHHHHHHcC--------C--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhc-CCEEEEEecCC
Confidence 4788999999875 3 78999999999999999999999999999999887666666666 99999999876
Q ss_pred CCCcccCHHHHHHHHHHHhhc-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 166 SNGFRITISALENAYQQAQTL-NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~-~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
+++|.+|++.+++++++.... ++++++|++++|+||||... ++++|+++|+++|+++|+|++|.. +.. + .
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~---~~~~i~~~~~~~~~~vivD~a~~~---g~~--~-~ 185 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH---DAKKIAKVCHEYGVPLLLNGAYTV---GRM--P-V 185 (361)
T ss_pred CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec---cHHHHHHHHHHcCCeEEEECCccc---CCc--C-C
Confidence 556789999999988643211 23688999999999999874 577888899999999999999973 221 1 1
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCCh----------HHHHHHH
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSS----------QTQYLLS 314 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~----------~~q~~~~ 314 (464)
+...+ +..++++|+||+++ +|.|+||++++++ +.+.+.+...++.++. ..+.++.
T Consensus 186 ~~~~~-------------~~d~~~~s~~K~l~-~~~~~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T cd06452 186 SGKEL-------------GADFIVGSGHKSMA-ASAPIGVLATTEE-WADIVFRTSQMFKIKEVELLGCTLRGAPLVTLM 250 (361)
T ss_pred CHHHc-------------CCCEEEecCCcccc-CCCCeEEEEECHH-HHHHHhccccccccceeeeeccccCchHHHHHH
Confidence 21111 45688999999998 5669999999654 4444444332221111 1122222
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee---cCCccEEEEEecCcccccC--ChhHHHHHHHHHHHhc
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL---KSNAGLFCWVDMRHLLVSN--TFEAEKELWKKIIFEV 388 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~---~~~~g~f~~~~l~~~~~~~--~~~~~~~l~~~ll~~~ 388 (464)
..+. +..++++...+.+ ++.+++.+.|+++ |++++ ++.++ |+.++.+...... ......++...|+ ++
T Consensus 251 ~al~---~~~~~~~~~~~~~-~~~~~l~~~L~~l~g~~v~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~ 324 (361)
T cd06452 251 ASFP---HVKERVKRWDEEV-EKARWFVAELEKIEGIKQLGEKPKNHD-LMFFETPSFDEIAKKHKRRGYFLYSELK-KR 324 (361)
T ss_pred HHHH---HHHHHHHHHHHHH-HHHHHHHHHHhcCCCeEEECCCCCCCc-eEEEEcCCcchhhhhccccchhHHHHHH-Hc
Confidence 2222 1122333333332 3447888999998 88886 34444 6667765211000 0001113666664 56
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 389 GLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 389 gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
||.+.. ....+++|+++...++++++.++++|+++.
T Consensus 325 gI~~~~-----~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 325 GIHGIK-----PGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred CceEEc-----CCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 999532 123458999993358999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=231.15 Aligned_cols=334 Identities=16% Similarity=0.133 Sum_probs=209.5
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.....+|||..+ .|+++ .+.+.+++.+..... ......|++. -..+|.+++++++ +
T Consensus 20 ~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~---------~~~~~~~~~~-~~~~l~~~la~~~----g-- 83 (379)
T TIGR00707 20 YVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKL---------VHVSNLYYTE-PQEELAEKLVEHS----G-- 83 (379)
T ss_pred EEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhc---------cccccccCCH-HHHHHHHHHHhhC----C--
Confidence 3333445678999875 55554 356666655532110 0011234321 2344555555544 3
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc---C----CCCeEEEcCCCCCChhhhcccCCCcEEE----EEecCCCCCccc--
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA---D----PGDAFLLPTPYYPGFDRDLKWRPGVEIV----PIHCSSSNGFRI-- 171 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~---~----~gd~Vlv~~p~y~~~~~~~~~~~g~~~~----~v~~~~~~~~~~-- 171 (464)
.+++++++|+++++..++.++. . +||+|++++|+|+++...+... +.... ..++..+..+..
T Consensus 84 ----~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 158 (379)
T TIGR00707 84 ----ADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSA-TGQPKYQKGFEPLVPGFSYAPYN 158 (379)
T ss_pred ----CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHh-cCChhhhccCCCCCCCceeeCCC
Confidence 2489999999999999988652 2 3799999999998776554433 32221 122221111111
Q ss_pred CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhh
Q 037587 172 TISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAV 250 (464)
Q Consensus 172 d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~ 250 (464)
|++.+++.+.+ ++++|+++.++||+|.. ++.+++++|.++|+++++++|+||+|.++.+.+. . .+. ...
T Consensus 159 d~~~l~~~~~~------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~--~-~~~-~~~ 228 (379)
T TIGR00707 159 DIESLKKAIDD------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK--F-FAY-EHY 228 (379)
T ss_pred CHHHHHHHhhh------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--h-hhH-Hhc
Confidence 78999988865 78888886556677764 6899999999999999999999999987544322 1 111 111
Q ss_pred hccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCCchhhHHHHH
Q 037587 251 MDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSDKKFTCNYMK 328 (464)
Q Consensus 251 ~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 328 (464)
. ..+++ .||||.++ +|+|+||++++ +.+.+.+... ...+..+++.|.++.++|+..+. .
T Consensus 229 ~---------~~~d~---~t~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~-----~ 289 (379)
T TIGR00707 229 G---------IEPDI---ITLAKGLG-GGVPIGATLAK-EEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEK-----E 289 (379)
T ss_pred C---------CCCCE---EEEccccc-CCcccEEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh-----h
Confidence 1 11233 27899999 99999999995 4455555432 22334678899888877752110 1
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 037587 329 ENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPG 404 (464)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~ 404 (464)
+.++.++++++.+.+.|.+. ++...+ ..|.|+|++++.. ..++...| .++||.+.|+. .+
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~g~~~~~~~~~~--------~~~~~~~l-~~~Gv~v~~~~------~~ 353 (379)
T TIGR00707 290 RLLENVKEKGDYFKERLEELGKNYPNKEVR-GKGLMLGIELEAP--------CKDIVKKA-LEKGLLVNCAG------PK 353 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCCccc-cCceEEEEEecCc--------HHHHHHHH-HHCCcEEeeCC------CC
Confidence 23344444555555555443 332222 3467899988631 12466665 57899999853 46
Q ss_pred eEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 405 WFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 405 ~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
++||+++. .+++++++++++|+++
T Consensus 354 ~lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 354 VLRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHh
Confidence 89999865 6899999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=226.93 Aligned_cols=294 Identities=17% Similarity=0.165 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFDP-NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v~~ 163 (464)
.++++.++++++ +++ +.+++++|+++++..++.+++.+||.|+++.++|.. +...++.. |++++.++.
T Consensus 35 ~~~~~~la~~~g--------~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~ 105 (356)
T cd06451 35 DEILEGLRYVFQ--------TENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERY-GADVDVVEK 105 (356)
T ss_pred HHHHHHHHHHhc--------CCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHh-CCCeEEeec
Confidence 466666666665 444 457788889999999999999999999999988765 34455555 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
++ ++.+|++++++.+++ .++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+ ++.. .
T Consensus 106 ~~--~~~~~~~~l~~~i~~-----~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~---~g~~--~- 169 (356)
T cd06451 106 PW--GEAVSPEEIAEALEQ-----HDIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSS---LGGE--P- 169 (356)
T ss_pred CC--CCCCCHHHHHHHHhc-----cCCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehh---ccCc--c-
Confidence 64 467899999998864 26789999999999999987 5567778889999999999886 4332 1
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH----hcc---------------cC-
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK----MSS---------------FG- 303 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~----~~~---------------~~- 303 (464)
.++... +..+++.|++|+++.+ .++||++.+++ +.+.+.. ... +.
T Consensus 170 ~~~~~~-------------~~d~~~~s~~K~l~~p-~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (356)
T cd06451 170 FRMDEW-------------GVDVAYTGSQKALGAP-PGLGPIAFSER-ALERIKKKTKPKGFYFDLLLLLKYWGEGYSYP 234 (356)
T ss_pred cccccc-------------CccEEEecCchhccCC-CCcceeEECHH-HHHHHHhcCCCCceeecHHHHHhhhcccCCCC
Confidence 121111 2335677999999844 46899999654 3333332 000 11
Q ss_pred -CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC---CccEEEEEecCcccccCChhHHHH
Q 037587 304 -LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS---NAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 304 -~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
+.+...+.++.++++.-. ...++...+..+++++++.+.|.+.|+++..+ .++.++|+.++.... ..+
T Consensus 235 ~t~~~~~~~a~~aal~~l~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 306 (356)
T cd06451 235 HTPPVNLLYALREALDLIL--EEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGVD------GDE 306 (356)
T ss_pred CCChHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCCC------HHH
Confidence 122333344444443211 22345566777788889999999888877642 245566777764321 224
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
++..|.+++||.+++|..+. .++++|++++. .+++++++++++|+++++
T Consensus 307 ~~~~L~~~~gI~~~~g~~~~--~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 307 VVRRLMKRYNIEIAGGLGPT--AGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred HHHHHHHhCCEEEecccccc--cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 66666544499999987542 35699999976 589999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-26 Score=227.48 Aligned_cols=336 Identities=15% Similarity=0.186 Sum_probs=223.6
Q ss_pred CCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccc--cCC----CCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 35 PSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELA--LFQ----DYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
..+++-|+.+....+++.+.+++.+..... ..... .+. ......++|+.++++++ ++
T Consensus 16 ~~~~~yld~~~~~~~p~~v~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~--------~~ 78 (403)
T TIGR01979 16 GKPLVYLDSAATSQKPQQVIDAVAEYYRNS---------NANVHRGIHTLSVRATEAYEAVREKVAKFIN--------AA 78 (403)
T ss_pred CCceEEEeCccccCCCHHHHHHHHHHHHhC---------CCCCCCCccHHHHHHHHHHHHHHHHHHHHhC--------cC
Confidence 345677887765555555666665432110 00000 000 01234688899999886 45
Q ss_pred -CCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCCCChh----hhcccCCCcEEEEEecCCCCCcccCHHHHHHH
Q 037587 109 -PNKLVLTAGSTAANETLMFCL----ADPGDAFLLPTPYYPGFD----RDLKWRPGVEIVPIHCSSSNGFRITISALENA 179 (464)
Q Consensus 109 -~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 179 (464)
+++|++|+|+++++.+++.++ +++||.|+++++.|+... ..+... |++++.++.++ ++.++++.+++.
T Consensus 79 ~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~l~~~ 155 (403)
T TIGR01979 79 SDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERT-GATLKFIPLDD--DGTLDLDDLEKL 155 (403)
T ss_pred CCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhc-CcEEEEEecCC--CCCCCHHHHHHH
Confidence 679999999999999998875 578999999999887532 334444 99999999873 456899999998
Q ss_pred HHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCC
Q 037587 180 YQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259 (464)
Q Consensus 180 i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 259 (464)
+.+ ++++|++++|+||||..++ +++|.++|+++|+++|+|++|+. ... + .++.
T Consensus 156 i~~------~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~---g~~--~-~~~~------------ 208 (403)
T TIGR01979 156 LTE------KTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAV---PHM--P-VDVQ------------ 208 (403)
T ss_pred hcc------CCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhc---Ccc--c-cCcc------------
Confidence 865 7899999999999999987 56788888899999999999973 211 1 1211
Q ss_pred CCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc-----------------------ccCCCChHHHHHHHHH
Q 037587 260 DLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS-----------------------SFGLVSSQTQYLLSRM 316 (464)
Q Consensus 260 ~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-----------------------~~~~~s~~~q~~~~~~ 316 (464)
..+..+++.|++|.+|.+| +|+++++++ +.+.+.... ..++.+.....++..+
T Consensus 209 -~~~~d~~~~s~~K~~gp~G--~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a 284 (403)
T TIGR01979 209 -ALDCDFYVFSGHKMYGPTG--IGVLYGKEE-LLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAA 284 (403)
T ss_pred -ccCCCEEEEecccccCCCC--ceEEEEchH-HHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHH
Confidence 1145688899999998667 899988544 333221110 0012333444444444
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC-----ccEEEEEecCcccccCChhHHHHHHHHHHHhcCe
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSN-----AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGL 390 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI 390 (464)
++.-. ....+..+++..+.++.+.+.|+++ |+++..+. ++ ++.+.++.. . ..++. ..|+++||
T Consensus 285 l~~~~--~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~-~v~~~~~~~-~------~~~~~-~~L~~~gI 353 (403)
T TIGR01979 285 IDYLE--AIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGG-IISFNVEGV-H------PHDVG-TILDEEGI 353 (403)
T ss_pred HHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCc-eEEEEeCCc-C------HHHHH-HHHhhCCE
Confidence 43211 1113455666777778888888877 78887543 45 555666531 1 12344 45578899
Q ss_pred EEeCCCCCC------CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 391 NISPGSSCH------CNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 391 ~v~pg~~f~------~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+++|..+. ...++++|||++. .++++++.+++.|+++++..
T Consensus 354 ~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 354 AVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred EEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 999876332 1135789999986 68999999999999877643
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-27 Score=232.59 Aligned_cols=299 Identities=15% Similarity=0.204 Sum_probs=210.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCCCChhh---hcccCCCcEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA----DPGDAFLLPTPYYPGFDR---DLKWRPGVEI 158 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~---~~~~~~g~~~ 158 (464)
..++|+.+|++++ +++++|++|+|+++++..++.+++ ++|+.|++..+.|+.+.. .++.. |+++
T Consensus 45 ~~~~r~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~-g~~v 115 (381)
T PRK02948 45 LQVCRKTFAEMIG--------GEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQ-GYTV 115 (381)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhC-CCEE
Confidence 3566777777765 578899999999999999988875 578999998866655433 34555 9999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
+.++++. ++.+|++.+++.+.+ ++++|++++|+||||.++| +++|.++|+++|+++|+|+++. |+.
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~---~g~ 181 (381)
T PRK02948 116 TEIPVDK--SGLIRLVDLERAITP------DTVLASIQHANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQT---FGK 181 (381)
T ss_pred EEEeeCC--CCCCCHHHHHHhcCC------CCEEEEEECCcCCcEeehh---HHHHHHHHHHcCCEEEEEChhh---ccc
Confidence 9999863 457899999988754 6789999999999999976 5578888889999999997665 443
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH------HhcccCCCChHHHHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT------KMSSFGLVSSQTQYL 312 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~------~~~~~~~~s~~~q~~ 312 (464)
. + ..+ . ..+..+++.|+||.+|.+| +|+++.+++....... ....+++.+.+.+.+
T Consensus 182 ~--~-~~~----~---------~~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a 243 (381)
T PRK02948 182 L--P-IDV----F---------EMGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAA 243 (381)
T ss_pred c--c-cCc----c---------cCCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHH
Confidence 2 1 111 1 2256678899999999888 7998875442100010 001245677788888
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeE
Q 037587 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN-AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLN 391 (464)
Q Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~ 391 (464)
+..+++.. .+++++.++.+++.++++.+.|+++|+++.+.. .+ +....+... ...... ..++...| .++||.
T Consensus 244 ~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~-~~~~~i~~~-~~~~~~-~~~~~~~l-~~~gI~ 316 (381)
T PRK02948 244 FLTAAENI---LKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHST-SCLPHIIGV-TIKGIE-GQYTMLEC-NRRGIA 316 (381)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCc-cCcCCEEEE-EeCCCC-HHHHHHhc-ccCCEE
Confidence 88887642 345677788899999999999999887665432 22 221111000 000111 12345554 678999
Q ss_pred EeCCCCCCCC-----------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 392 ISPGSSCHCN-----------------EPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 392 v~pg~~f~~~-----------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
|++|..+... ..+++|||++. .++++++.+++.|++++++.
T Consensus 317 v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 375 (381)
T PRK02948 317 ISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred EEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9988753210 14689999987 68999999999999987654
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=220.04 Aligned_cols=294 Identities=17% Similarity=0.145 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCC
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS 166 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~ 166 (464)
.++++.++++++ . ++ .++++++++++..++.+++++||.|+++.|+|+.+...+... |++++.++.
T Consensus 49 ~~l~~~la~~~~--------~-~~-~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~--- 114 (349)
T cd06454 49 EELEEELAEFHG--------K-EA-ALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLS-GAKKRIFKH--- 114 (349)
T ss_pred HHHHHHHHHHhC--------C-CC-EEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHc-CCceEEecC---
Confidence 556666666553 2 23 455555577888888888999999999999999887777766 999887752
Q ss_pred CCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccch
Q 037587 167 NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISI 246 (464)
Q Consensus 167 ~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~ 246 (464)
+|++.+++.+++.. ...+++++++++|+||||...+ +++|+++|+++|+++|+|++|+...+... . ...
T Consensus 115 ----~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~--~-~~~ 183 (349)
T cd06454 115 ----NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPH--G-RGV 183 (349)
T ss_pred ----CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCC--C-CCh
Confidence 46788888876532 1235778888899999999865 67788899999999999999974323211 0 111
Q ss_pred hhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-ccc---CCCChHHHHHHHHHcCCchh
Q 037587 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSF---GLVSSQTQYLLSRMLSDKKF 322 (464)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~ 322 (464)
. .... +..+.+++++|+||.+|.+| ||++++++ +.+.+... ..+ ...++..+.++...++...
T Consensus 184 ~-~~~~-------~~~~~~i~~~s~sK~~~~~g---G~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~- 250 (349)
T cd06454 184 E-EFGG-------LTDDVDIIMGTLGKAFGAVG---GYIAGSKE-LIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQ- 250 (349)
T ss_pred h-hhcc-------ccccCcEEEeechhhhcccC---CEEECCHH-HHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHh-
Confidence 0 1110 12367889999999998655 99988544 43333332 222 2345555556666554321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-CC
Q 037587 323 TCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-CN 401 (464)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-~~ 401 (464)
+ ....++++.++++.+.+.|.++|+.+..+.++++.++.++.. ....++...|++ +||.+.++.... ..
T Consensus 251 --~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~-~gI~~~~~~~~~~~~ 320 (349)
T cd06454 251 --G-GPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDP------AKAVAFSDALLE-RGIYVQAIRYPTVPR 320 (349)
T ss_pred --c-CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCCh------HHHHHHHHHHHh-CCceEEEecCCccCC
Confidence 1 345677888888999999998888777665665555544321 123357777764 599998864221 11
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 402 EPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 402 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
..+++||+++. .+++++++++++|+++
T Consensus 321 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 321 GTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 24689999986 6899999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=226.83 Aligned_cols=339 Identities=14% Similarity=0.149 Sum_probs=224.1
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhccccccccccc---CCC---CCCcHHHHHHHHHHHHHHcCCCCCCC-
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELAL---FQD---YHGFPDAKKELVKLMARIRGNKVKFD- 108 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Y~~---~~g~~~lr~~ia~~~~~~~~~~~~~~- 108 (464)
.++|-|+.+....+++.+.+++.+.... . ...... |.. .....++|++++++++ ++
T Consensus 31 ~~~iyLd~a~~~~~p~~v~~a~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--------~~~ 93 (424)
T PLN02855 31 SKLVYLDNAATSQKPAAVLDALQDYYEE--Y-------NSNVHRGIHALSAKATDAYELARKKVAAFIN--------AST 93 (424)
T ss_pred CCeEEeeCccccCCCHHHHHHHHHHHHh--c-------CCCCCCccchHHHHHHHHHHHHHHHHHHHcC--------CCC
Confidence 3568888765555555566666553211 0 000001 110 1124688899999886 43
Q ss_pred CCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCCCCh----hhhcccCCCcEEEEEecCCCCCcccCHHHHHHHH
Q 037587 109 PNKLVLTAGSTAANETLMFCL----ADPGDAFLLPTPYYPGF----DRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 180 (464)
+++|++|+|+++++..++.++ +++||+|+++.+.|+.. ...++.. |++++.++++++ ..+|++.+++.+
T Consensus 94 ~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~-g~~v~~v~~~~~--~~~~~~~l~~~i 170 (424)
T PLN02855 94 SREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKT-GAVLKFVGLTPD--EVLDVEQLKELL 170 (424)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHc-CCEEEEEecCCC--CCcCHHHHHHHh
Confidence 579999999999999998763 57899999999988653 3334445 999999998643 348899999988
Q ss_pred HHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCC
Q 037587 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260 (464)
Q Consensus 181 ~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (464)
.+ ++++|++++|+||||.++|. ++|+++|+++|+++|+|++|+ .+.. + .++..
T Consensus 171 ~~------~t~lv~i~~~~n~tG~~~~~---~~I~~l~~~~g~~vivD~a~~---~g~~--~-~~~~~------------ 223 (424)
T PLN02855 171 SE------KTKLVATHHVSNVLGSILPV---EDIVHWAHAVGAKVLVDACQS---VPHM--P-VDVQT------------ 223 (424)
T ss_pred cc------CceEEEEeCccccccccCCH---HHHHHHHHHcCCEEEEEhhhh---cCCc--C-CCchh------------
Confidence 64 78999999999999999984 567888889999999999996 3222 1 12111
Q ss_pred CCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-----------------------cccCCCChHHHHHHHHHc
Q 037587 261 LWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-----------------------SSFGLVSSQTQYLLSRML 317 (464)
Q Consensus 261 ~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-----------------------~~~~~~s~~~q~~~~~~l 317 (464)
.+..+++.|++|.+|.+| +||++++++.+ +.+... ...++.+.....++..++
T Consensus 224 -~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al 299 (424)
T PLN02855 224 -LGADFLVASSHKMCGPTG--IGFLWGKSDLL-ESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAI 299 (424)
T ss_pred -cCCCEEEeecccccCCCc--cEEEEEchhhh-hcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHH
Confidence 134577999999888556 89999865433 222111 001122223333444444
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC------ccEEEEEecCcccccCChhHHHHHHHHHHHhcCe
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSN------AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGL 390 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~------~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI 390 (464)
+.-. +..+++.+++..+.++++.+.|.++ |++++.+. .+.++.+.++.. . ..++...|.+++||
T Consensus 300 ~~~~--~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-~------~~~v~~~L~~~~gI 370 (424)
T PLN02855 300 DYLS--EIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-H------PTDLSTFLDQQHGV 370 (424)
T ss_pred HHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-C------HHHHHHHhcccCCE
Confidence 3111 2235566677777788888888877 77777432 123666666531 1 12455665444599
Q ss_pred EEeCCCCCCC------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 391 NISPGSSCHC------NEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 391 ~v~pg~~f~~------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.++.|..+.. ..++++|||++. .++++++.+++.|+++++..+.
T Consensus 371 ~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~~ 421 (424)
T PLN02855 371 AIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFSS 421 (424)
T ss_pred EEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9998875431 124689999987 7899999999999999877543
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=222.36 Aligned_cols=225 Identities=20% Similarity=0.272 Sum_probs=169.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----cc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~ 152 (464)
..+|+.+. ...|++.||++.+ .+++++++|+++++..++.+++++||.|+++.|+|+.+...+ ..
T Consensus 77 y~R~~~Pt-~~~Le~~lA~leg----------~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~ 145 (427)
T PRK07049 77 YSRFNHPN-SEIVEDRLAVYEG----------AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRN 145 (427)
T ss_pred ccCCCCcC-HHHHHHHHHHHhC----------CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHh
Confidence 35677654 4899999999874 346888888889999999999999999999999999987653 34
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh---CCeEEEEec
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS---KRIHIVSDE 229 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~---~~~~lI~De 229 (464)
. |++++.++.. .|++.+++.+.+... .+++++|++++|+||||.+++.+++.++++.|.. +++++|+||
T Consensus 146 ~-Gi~~v~~~~~------~d~~~l~~~l~~~~~-~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDe 217 (427)
T PRK07049 146 F-GVGAVGFADG------LSEAAIGAAAEAAAA-KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDN 217 (427)
T ss_pred c-CcEEEEEeCC------CCHHHHHHHHHhhcc-CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEEC
Confidence 4 8887777621 467788777754211 1378999999999999999999999999998654 689999999
Q ss_pred cccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhcccC--CCC
Q 037587 230 IYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSFG--LVS 306 (464)
Q Consensus 230 ay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s 306 (464)
+|....+. . ++ .. +..++++||||.+| ++|+|+||+++++ .+.+.+......+ .++
T Consensus 218 ty~~~~~~-~-----pl-~~-------------g~divv~S~SK~~gG~~glr~G~vv~~~-~l~~~l~~~~~~~g~~ls 276 (427)
T PRK07049 218 TLLGPVFQ-K-----PL-EH-------------GADLSVYSLTKYVGGHSDLVAGAVLGRK-ALIRQVRALRSAIGTQLD 276 (427)
T ss_pred CccccccC-C-----cc-cc-------------CCCEEEEcCceeecCCCCcEEEEEECCH-HHHHHHHHHHHhcCCCCC
Confidence 98753221 1 11 11 45688899999998 6999999999854 4555555444332 367
Q ss_pred hHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 307 SQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 307 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
++.|.++...++. +..+.++..+++..+.+.|+++
T Consensus 277 ~~~a~l~~r~L~t-------l~~R~~~~~~~a~~la~~L~~~ 311 (427)
T PRK07049 277 PHSCWMLGRSLET-------LVLRMERANRNARAVAEFLRDH 311 (427)
T ss_pred HHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 7888887777753 3334455577888999999987
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=224.28 Aligned_cols=344 Identities=15% Similarity=0.117 Sum_probs=216.8
Q ss_pred CceEEeecccc-cc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 36 SGIIQMGLAEN-QL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..+++|+.|.. .+ ++|.+.+++.+..... +...-.....|.+.....+|++.+|++++ .++.++
T Consensus 46 ~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~-----~~~~~~s~~~~g~~~~~~~l~~~la~~~g---------~~~~~~ 111 (407)
T PRK09064 46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRC-----GAGAGGTRNISGTNHYHVELERELADLHG---------KEAALV 111 (407)
T ss_pred ceEEEEECCCCcCCCCCHHHHHHHHHHHHHc-----CCCCCCcCcCccCHHHHHHHHHHHHHHhC---------CCcEEE
Confidence 45788887622 12 2456666665532210 00000001123223335678888888764 245566
Q ss_pred EeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 114 LTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
+++| ++++..++..++. +++.|+.....|......+... |+++..++. .|++.+++.++.. ..++++
T Consensus 112 ~~sG-~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~-~~~~~~~~~-------~d~~~le~~l~~~--~~~~~~ 180 (407)
T PRK09064 112 FTSG-YVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRS-RCEKHIFRH-------NDVAHLEELLAAA--DPDRPK 180 (407)
T ss_pred ECcH-HHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHc-CCcEEEECC-------CCHHHHHHHHHhc--cCCCCe
Confidence 6665 4566666666554 7777777766665554555544 777655542 3678888877532 113678
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+|++++|+||+|.+.+ +++|.++|+++|+++|+||+|....|+..+ ..+..... + ..+.+++++||
T Consensus 181 ~v~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g---~g~~~~~~-~-------~~~~div~~t~ 246 (407)
T PRK09064 181 LIAFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRG---GGIAERDG-L-------MDRIDIIEGTL 246 (407)
T ss_pred EEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCC---CChHHhcC-C-------CCCCeEEEEec
Confidence 9999999999999876 777888888999999999999743354331 12211111 0 12347889999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhc-ccC---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMS-SFG---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV 347 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 347 (464)
||+||++| ||++++ +.+.+.+.... .+. ..++..+.++.+.++.. ++ ....++.+.++++++.+.|++
T Consensus 247 sKa~g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~---~~-~~~~~~~~~~~~~~l~~~L~~ 318 (407)
T PRK09064 247 AKAFGVMG---GYIAGS-AALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHL---KE-SNEERERHQERAAKLKAALDA 318 (407)
T ss_pred chhhhccC---ceEecC-HHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHH
Confidence 99999888 999985 44555444432 221 23444555555544321 21 233456778888999999999
Q ss_pred CCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHHH
Q 037587 348 AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFAN-ITEETLQVALQRI 425 (464)
Q Consensus 348 ~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~~l~~l 425 (464)
.|+++.++.++ |+++.++.. ....++...+++++||.|++...+.. .+.+++||+++. .++++++++++.|
T Consensus 319 ~g~~~~~~~~~-iv~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l 391 (407)
T PRK09064 319 AGIPVMPNESH-IVPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEAL 391 (407)
T ss_pred cCCCCCCCCCC-EEEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 99888776665 666766421 12335777777677999998654322 134689999976 6899999999999
Q ss_pred HHHHHhhC
Q 037587 426 KVFAQSCN 433 (464)
Q Consensus 426 ~~~l~~~~ 433 (464)
++++++..
T Consensus 392 ~~~~~~~~ 399 (407)
T PRK09064 392 VEVWARLG 399 (407)
T ss_pred HHHHHHcC
Confidence 99987654
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=225.91 Aligned_cols=338 Identities=14% Similarity=0.110 Sum_probs=218.4
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||..+ .+.+. .|.+.+++.+..... + .....|++..+ .+|.+.+++++ +
T Consensus 36 ~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~-----~----~~~~~~~~~~~-~~la~~l~~~~----~-- 99 (398)
T PRK03244 36 VVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATL-----G----HVSNLFATEPQ-IALAERLVELL----G-- 99 (398)
T ss_pred EEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhc-----c----CccCccCCHHH-HHHHHHHHHhC----C--
Confidence 4334456778999875 34443 366666666542210 0 01124654332 45555555543 2
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcCCC-CeEEEcCCCCCChhhhcccCCCc------------EEEEEecCCCCCccc
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLADPG-DAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCSSSNGFRI 171 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~ 171 (464)
. ..++++++++|+++++..+++.+..+| +.|+..+++|+++........|. ++..+|. .
T Consensus 100 ~-~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 171 (398)
T PRK03244 100 A-PEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------G 171 (398)
T ss_pred C-CCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------C
Confidence 1 135799999999999999999766666 56777788998774333222122 1222221 2
Q ss_pred CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHH-HHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhh
Q 037587 172 TISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQE-LNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAV 250 (464)
Q Consensus 172 d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~-l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~ 250 (464)
|++.+++.+.+ ++++|++..++||+|.+++.++ +++|.++|+++|+++|+||+|.++...+. .+ . ...
T Consensus 172 d~~~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~-~-~~~- 240 (398)
T PRK03244 172 DVDALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA--WF-A-HQH- 240 (398)
T ss_pred CHHHHHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch--HH-h-hhh-
Confidence 68888887743 7888999888999999997765 99999999999999999999987433222 11 1 111
Q ss_pred hccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHHcCCchhhHHHHH
Q 037587 251 MDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRMLSDKKFTCNYMK 328 (464)
Q Consensus 251 ~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 328 (464)
.+ ..++ +.||||++| +|+|+||++++++ +.+.+.. ....+..+++.+.++.++|+.-. -.
T Consensus 241 ~~--------~~pD---i~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-----~~ 302 (398)
T PRK03244 241 DG--------VTPD---VVTLAKGLG-GGLPIGACLAFGP-AADLLTPGLHGSTFGGNPVACAAALAVLDTIA-----SE 302 (398)
T ss_pred hC--------CCCC---EEEEchhhh-CCcccEEEEEcHH-HHhhccCCCCcCCCCCCHHHHHHHHHHHHHHH-----hc
Confidence 11 1122 238899999 9999999999554 5554433 22234577888888888865211 01
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCee--ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 037587 329 ENRKRLRKRKEMLVSGLKVAGIRC--LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWF 406 (464)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 406 (464)
+..+.++++.+++.+.|++++.++ .....|+++|+.++.. ...++...++ ++||++.+.. .+++
T Consensus 303 ~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~-~~Gv~~~~~~------~~~i 368 (398)
T PRK03244 303 GLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAR-EAGFLVNAVA------PDVI 368 (398)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEecc-------HHHHHHHHHH-HCCeEEeecC------CCEE
Confidence 223444555666777887754421 1123568999998631 1234666665 6799998742 4689
Q ss_pred EEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 407 RICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 407 Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
|++++. .+++++++++++|++++++.+
T Consensus 369 R~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 369 RLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred EEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 999877 789999999999999987653
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=223.36 Aligned_cols=292 Identities=14% Similarity=0.183 Sum_probs=203.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCC-CCCcEEEeCChHHHHHHHHHH----hcCCCCeEEEcCCCCCCh----hhhcccCCCc
Q 037587 86 FPDAKKELVKLMARIRGNKVKF-DPNKLVLTAGSTAANETLMFC----LADPGDAFLLPTPYYPGF----DRDLKWRPGV 156 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~-~~~~i~it~G~~~al~~~~~~----l~~~gd~Vlv~~p~y~~~----~~~~~~~~g~ 156 (464)
..++|+++|++++ . ++++|++|+|+++++..++.+ ++++||.|+++++.|++. ...++.. |+
T Consensus 69 ~~~~r~~la~~~~--------~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~ 139 (406)
T PRK09295 69 MENVRKQAALFIN--------ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARV-GA 139 (406)
T ss_pred HHHHHHHHHHHcC--------cCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHc-Cc
Confidence 4578888888876 3 578999999999999999886 468899999999988643 3334445 99
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccccc
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF 236 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~ 236 (464)
+++.++++. ++.+|++++++.+.+ ++++|++++|+||||.++| +++|+++|+++|+++|+|++|+.
T Consensus 140 ~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~--- 205 (406)
T PRK09295 140 ELRVIPLNP--DGTLQLETLPALFDE------RTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAV--- 205 (406)
T ss_pred EEEEEecCC--CCCCCHHHHHHhcCC------CcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEccccc---
Confidence 999999864 456899999988754 7899999999999999987 56688888899999999999973
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-----------------
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM----------------- 299 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~----------------- 299 (464)
... + .++.. .+..+++.|++|.+|.+| +||++.+++.+ +.+...
T Consensus 206 g~~--~-~~~~~-------------~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~ 266 (406)
T PRK09295 206 MHH--P-VDVQA-------------LDCDFYVFSGHKLYGPTG--IGILYVKEALL-QEMPPWEGGGSMIATVSLTEGTT 266 (406)
T ss_pred Ccc--c-cCchh-------------cCCCEEEeehhhccCCCC--cEEEEEchHhH-hhCCCcccCCceeeeeecCCccc
Confidence 222 1 12211 144578899999988666 79999865432 222100
Q ss_pred -------cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC--ccEEEEEecCccc
Q 037587 300 -------SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSN--AGLFCWVDMRHLL 369 (464)
Q Consensus 300 -------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~f~~~~l~~~~ 369 (464)
...++.+.....++.++++.-. +.-++..+++.++..+++.+.|.+. |+++..+. .+ .+.+.++..
T Consensus 267 ~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~-iv~~~~~~~- 342 (406)
T PRK09295 267 WAKAPWRFEAGTPNTGGIIGLGAALDYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG-VIAFNLGKH- 342 (406)
T ss_pred cCCchhhcCCCCccHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCce-EEEEEECCc-
Confidence 0012344444455555543211 1123445566777778888888777 67776542 44 444555431
Q ss_pred ccCChhHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 370 VSNTFEAEKELWKKIIFEVGLNISPGSSCHC------NEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 370 ~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
. ..++.. .|+++||.|+.|..+.. ..++++|+|++. .++++++.++++|+++..
T Consensus 343 -----~-~~~~~~-~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 343 -----H-AYDVGS-FLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred -----C-HHHHHH-HHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 1 123444 45788999998875542 124689999987 789999999999988643
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=219.38 Aligned_cols=294 Identities=19% Similarity=0.224 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCC--cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-CCC-hhhhcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPN--KLVLTAGSTAANETLMFCLADPGDAFLLPTPY-YPG-FDRDLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~-y~~-~~~~~~~~~g~~~~~v 161 (464)
..++|+.++++++ ++++ .|++++|+++++..++.+++.+||++++..+. |+. +...+... |.+++.+
T Consensus 33 ~~~~~~~la~~~~--------~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~-g~~~~~i 103 (355)
T TIGR03301 33 TDQVRDRLLALAG--------GDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYL-GIPHTDL 103 (355)
T ss_pred HHHHHHHHHHHhc--------CCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHc-CCceEEE
Confidence 4677788888776 4443 57889999999999999998888887766655 443 33445555 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+. ++.+|++++++.+++ +++++++++++++||||...+ +++|+++|+++++++|+|++++ ++..
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s---~g~~-- 169 (355)
T TIGR03301 104 NFSE--YEPPDLNRIEEALAA----DPDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSS---FGAI-- 169 (355)
T ss_pred ecCC--CCCCCHHHHHHHHHh----CCCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEeccc---cCCc--
Confidence 8753 467899999998864 236677888999999999875 6788899999999999998776 4332
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHHHHh-------------------cc
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAATKM-------------------SS 301 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~~~-------------------~~ 301 (464)
+ .++.. .+..+++.|++|.+ |++| +||++++++.+ +.+... ..
T Consensus 170 ~-~~~~~-------------~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (355)
T TIGR03301 170 P-IDIEE-------------LDVDALIASANKCLEGVPG--FGFVIARRDLL-EASAGNARSLYLDLYDQWAYMEKTGKW 232 (355)
T ss_pred c-cchhh-------------cCccEEEecCCcccccCCc--eeEEEECHHHH-HHhhCCCCCceeeHHHHHHHhhhcCCC
Confidence 1 22211 14567889999987 5556 69999965543 333210 01
Q ss_pred cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC---CccEEEEEecCcccccCChhHHH
Q 037587 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS---NAGLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 302 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~f~~~~l~~~~~~~~~~~~~ 378 (464)
.++.+...+.++..++..-.. ..++++.+++++++++++.+.|+++|+++..+ .+++++|+.++.... ....
T Consensus 233 ~~t~~~~~~~a~~~al~~~~~-~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 307 (355)
T TIGR03301 233 RFTPPTHTVYAFAQALEELEA-EGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPD----FDFD 307 (355)
T ss_pred CCCCcHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCc----chHH
Confidence 224565666665555542110 11256667778888999999999888875533 345678888874211 1122
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 379 ELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
++...+ .++||.+.+|..+. .+++||++.. .++++++.+++.|+++
T Consensus 308 ~~~~~l-~~~gi~i~~~~~~~---~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 308 DFYQEL-KERGFVIYPGKLTL---ADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred HHHHHH-HHCCEEEECCcccc---ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 455555 57799999987553 3789999843 7899999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=221.21 Aligned_cols=329 Identities=14% Similarity=0.148 Sum_probs=213.0
Q ss_pred eEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCC----cHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 38 IIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHG----FPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 38 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
.+-|+.+....+++.+.+++.+.... .. ......|+...+ ..++|+.++++++ +++++|+
T Consensus 18 ~~yl~~~~~~~~p~~v~~a~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~l~~~ia~~~~--------~~~~~v~ 81 (397)
T TIGR01976 18 RVFFDNPAGTQIPQSVADAVSAALTR-----SN---ANRGGAYESSRRADQVVDDAREAVADLLN--------ADPPEVV 81 (397)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHh-----cC---CCCCCCchHHHHHHHHHHHHHHHHHHHcC--------CCCCeEE
Confidence 57777665555555566665543211 00 011123443333 3477777777765 5566899
Q ss_pred EeCChHHHHHHHHHHh---cCCCCeEEEcCCCCCChh----hhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 114 LTAGSTAANETLMFCL---ADPGDAFLLPTPYYPGFD----RDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 114 it~G~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
+++|+++++..++.++ +++||+|++++|.|.... ..++.. |++++.++++++ ++.++++.+++.+.+
T Consensus 82 ~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~~~~~~~~~~~-~~~~~~~~l~~~i~~---- 155 (397)
T TIGR01976 82 FGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERA-GAKVKWARVDEA-TGELHPDDLASLLSP---- 155 (397)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhc-CCEEEEEecccc-CCCcCHHHHHHhcCC----
Confidence 9999999998887775 679999999999986643 334445 999999988743 467899999998854
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
++++|++++|+||||.+++ +++|.++|+++|+++|+|+++.. + . ....+.. .+..+
T Consensus 156 --~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~---~-~--~~~~~~~-------------~~~d~ 211 (397)
T TIGR01976 156 --RTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYA---P-H--GLIDVQA-------------TGADF 211 (397)
T ss_pred --CceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc---c-c--cCCCHHH-------------cCCCE
Confidence 7899999999999999975 77788888899999999999852 2 1 1112211 13456
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc------------CCCChHH---HHHHHHHcCCch---------h
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF------------GLVSSQT---QYLLSRMLSDKK---------F 322 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~------------~~~s~~~---q~~~~~~l~~~~---------~ 322 (464)
++.|++|.+| .|+||++++++ +.+.+...... ++.+... ..++..++.+.. .
T Consensus 212 ~~~s~~K~~g---~~~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~ 287 (397)
T TIGR01976 212 LTCSAYKFFG---PHMGILWGRPE-LLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRER 287 (397)
T ss_pred EEEechhhcC---CceEEEEEcHH-HHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhh
Confidence 6789999885 36899998554 43333221111 1112222 222233332211 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecC-----CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 323 TCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKS-----NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-----~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
+...+++.+++..+..+++.+.|++++ +++..+ .++ ++.+.++.. . ..++..+| .++||.|+.|.
T Consensus 288 ~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~------~~~l~~~L-~~~gI~v~~~~ 358 (397)
T TIGR01976 288 LVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL-P------PQRVVRRL-ADQGIDAWAGH 358 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-C------HHHHHHHH-HHCCeEEEeCc
Confidence 011245566777778888888888874 877654 455 666665421 1 12466665 57799999886
Q ss_pred CCCC---------CCCCeEEEEeec-CCHHHHHHHHHHH
Q 037587 397 SCHC---------NEPGWFRICFAN-ITEETLQVALQRI 425 (464)
Q Consensus 397 ~f~~---------~~~~~~Ris~~~-~~~e~l~~~l~~l 425 (464)
.|.. ...+++|||++. .++++++.++++|
T Consensus 359 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 359 FYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred cchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 6541 134689999976 6899999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=216.90 Aligned_cols=294 Identities=16% Similarity=0.162 Sum_probs=199.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..+|.+.+|++++ . +.+++++|+++++..++.+++.+||.|++..+.|......+... |++++.++.
T Consensus 101 ~~~le~~la~~~g--------~--~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~-g~~~~~~~~-- 167 (407)
T PRK07179 101 KPQFEKKLAAFTG--------F--ESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAA-GAQAHPFRH-- 167 (407)
T ss_pred HHHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHC-CCeEEEecC--
Confidence 4678888888874 2 45688999999999999999999999999999888777666655 888766542
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~ 245 (464)
.|++.+++.+++. ++++|++++|+||||.+.| +++|.++|+++|+++|+||+|....++.. . ..
T Consensus 168 -----~d~~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~--g-~g 231 (407)
T PRK07179 168 -----NDVDHLRRQIERH-----GPGIIVVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQ--G-AG 231 (407)
T ss_pred -----CCHHHHHHHHHhc-----CCeEEEECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCC--C-Cc
Confidence 4789999988641 4678888899999999988 56788888899999999999974333222 1 11
Q ss_pred hhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc---cCC-CChHHHHHHHHHcCCch
Q 037587 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS---FGL-VSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~---~~~-~s~~~q~~~~~~l~~~~ 321 (464)
...... . .....+++.|+||++| + |+||+++++ .+.+.+..... +.. .++....++.++++..
T Consensus 232 ~~~~~~-~-------~~~vdi~~~S~sK~~g-~--~~G~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~- 298 (407)
T PRK07179 232 LVAELG-L-------TSRVHFITASLAKAFA-G--RAGIITCPR-ELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI- 298 (407)
T ss_pred hHHhcC-C-------CCCCCEEEeechHhhh-c--cCeEEEeCH-HHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH-
Confidence 111111 0 1123578899999996 2 699999854 45454443322 221 2222222233333321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC-CCCC
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS-SCHC 400 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~-~f~~ 400 (464)
+...+.+++++++++++.+.|.++|+++. +.+ .++++.++.. .....+... |.++||.+..-. ....
T Consensus 299 ---~~~~~~~~~l~~~~~~l~~~L~~~g~~v~-~~~-~i~~l~~~~~------~~~~~~~~~-L~~~GI~~~~~~~p~~~ 366 (407)
T PRK07179 299 ---ESADDRRARLHANARFLREGLSELGYNIR-SES-QIIALETGSE------RNTEVLRDA-LEERNVFGAVFCAPATP 366 (407)
T ss_pred ---hcCHHHHHHHHHHHHHHHHHHHHcCCCCC-CCC-CEEEEEeCCH------HHHHHHHHH-HHHCCceEeeecCCCCC
Confidence 11344667888899999999998888776 444 4777776531 112234444 467899854211 1111
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 401 NEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 401 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
...+++||+++. .+++++++++++|++++++..
T Consensus 367 ~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 400 (407)
T PRK07179 367 KNRNLIRLSLNADLTASDLDRVLEVCREARDEVD 400 (407)
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHHHHHHHhhC
Confidence 235789999987 799999999999999888754
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=218.14 Aligned_cols=299 Identities=14% Similarity=0.139 Sum_probs=200.3
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEEEec
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
..+|++.+|++++ .++ .++++++++++..++..+.. +|+.|+.....|......+... |+++..++.
T Consensus 92 ~~~Le~~la~~~g---------~~~-~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~-g~~~~~~~~ 160 (402)
T TIGR01821 92 HVELEAELADLHG---------KES-ALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHS-GAEKFIFRH 160 (402)
T ss_pred HHHHHHHHHHHhC---------CCe-EEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHc-CCeEEEECC
Confidence 4678888888774 233 45555558888888887765 6777777655665555555545 777665542
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
.|++.+++.++.. ...++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|....++..+
T Consensus 161 -------~d~~~l~~~l~~~--~~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g--- 225 (402)
T TIGR01821 161 -------NDVAHLEKLLQSV--DPNRPKIIAFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRG--- 225 (402)
T ss_pred -------CCHHHHHHHHHhc--cCCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCC---
Confidence 2677888777532 1125788999999999999987 677888899999999999999843343321
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-c---CCCChHHHHHHHHHcCC
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-F---GLVSSQTQYLLSRMLSD 319 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-~---~~~s~~~q~~~~~~l~~ 319 (464)
...... .+. ..+.+++++||||+||++| ||+++++ .+.+.+..... + ...++..+.++.++++.
T Consensus 226 ~g~~~~-~~~-------~~~~div~~t~sKa~g~~G---G~i~~~~-~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~ 293 (402)
T TIGR01821 226 GGIAER-DGL-------MHRIDIIEGTLAKAFGVVG---GYIAASR-KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRH 293 (402)
T ss_pred Cccchh-ccC-------CCCCeEEEEechhhhccCC---ceeecCH-HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHH
Confidence 111111 100 1134678899999999888 9998854 45555544322 2 12455667766666653
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH 399 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~ 399 (464)
... ....++.+.++++++.+.|+++|+++.++.++ ++.+.++.. ....++...|++++||.+++.....
T Consensus 294 ~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-i~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~ 362 (402)
T TIGR01821 294 LKE----SQDLRRAHQENVKRLKNLLEALGIPVIPNPSH-IVPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPT 362 (402)
T ss_pred hhc----CHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCC
Confidence 221 13344556678888999999889888777776 566665421 1233577777767799998865332
Q ss_pred C-CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 400 C-NEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 400 ~-~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
. .+.+++||+++. .+++++++++++|++++++..
T Consensus 363 ~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 398 (402)
T TIGR01821 363 VPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRLG 398 (402)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 234689999966 689999999999999987653
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=217.43 Aligned_cols=342 Identities=18% Similarity=0.139 Sum_probs=216.1
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+ ..|.+.+++.+..+. ...++.. ...+....+++.+.+.
T Consensus 23 ~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~-------------~~~~~~~-~~~~~~~~la~~l~~~--- 85 (389)
T PRK01278 23 VWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEK-------------LWHVSNL-YRIPEQERLAERLVEN--- 85 (389)
T ss_pred CEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHh-------------cCccccc-cCChHHHHHHHHHHhh---
Confidence 34444556678998764 2333 346666666664221 1111111 1233445555555432
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHh----cCCCC----eEEEcCCCCCChhhhcccCCCcEEEEEecCC-CCCcc----
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCL----ADPGD----AFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS-SNGFR---- 170 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~-~~~~~---- 170 (464)
...+++++++|+++++..+++++ ..+|| +|++.+++|+++........+.....-...+ ..++.
T Consensus 86 ---~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (389)
T PRK01278 86 ---SFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPF 162 (389)
T ss_pred ---CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCC
Confidence 13468999999999999998876 45666 8999999999886555433232211100000 11222
Q ss_pred cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCC-CCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhh
Q 037587 171 ITISALENAYQQAQTLNLKVKGVLITNPSNPLG-TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEA 249 (464)
Q Consensus 171 ~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG-~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l 249 (464)
.|++.+++.+.+ ++++|++..++||+| .++|.+.+++|.++|++||+++|+||+|.++.+.+. .+ .. ..
T Consensus 163 ~d~~~l~~~l~~------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~-~~-~~ 232 (389)
T PRK01278 163 GDIEALKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK--LF-AH-EW 232 (389)
T ss_pred CCHHHHHHhhCC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--ce-ee-cc
Confidence 478899888753 788888886688888 788999999999999999999999999997543332 11 10 11
Q ss_pred hhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCC---chhhH
Q 037587 250 VMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSD---KKFTC 324 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~---~~~~~ 324 (464)
. +. . +. +.||||.++ +|+|+||++++++ +.+.+.... ..++.+++.|.++.+.++. .++ .
T Consensus 233 ~-~~-------~-pd---i~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~-~ 297 (389)
T PRK01278 233 A-GV-------T-PD---IMAVAKGIG-GGFPLGACLATEE-AAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF-L 297 (389)
T ss_pred c-CC-------C-CC---EEEEehhcc-CCcceEEEEEcHH-HHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH-H
Confidence 1 11 1 11 358999998 9999999999554 444443222 1224677888888666642 233 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 037587 325 NYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPG 404 (464)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~ 404 (464)
++++++.+.++++.+.+.+.+.+. +....+ .|+++|++++. ...+++..+++ +||.+.|+. .+
T Consensus 298 ~~~~~~~~~l~~~l~~l~~~~~~~-~~~v~g-~G~~~~i~~~~--------~~~~~~~~l~~-~GV~~~p~~------~~ 360 (389)
T PRK01278 298 DNVQRMGLYLKQKLEGLVDRFPDV-IEEVRG-KGLLLGLKCVV--------PNRDLVQALRD-EGLLTVGAG------DN 360 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCc-eeeEec-ccEEEEEEEec--------CHHHHHHHHHH-CCeEEeecC------CC
Confidence 445555555555544443222111 222333 56788888752 12357777775 599999873 46
Q ss_pred eEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 405 WFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 405 ~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
++||+++. .+++++++++++|++++++
T Consensus 361 ~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 361 VVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred EEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 89999765 6899999999999998865
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=213.62 Aligned_cols=295 Identities=13% Similarity=0.161 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDP--NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~--~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~v~ 162 (464)
.++|+.++++++ +++ ++|++|+|+++++..++.++..+||.+++..+++.+. ...++.. |++++.++
T Consensus 38 ~~~r~~la~l~~--------~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~-g~~~~~v~ 108 (363)
T TIGR02326 38 EQIRQQLLALAT--------AEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYL-GIPHHVVD 108 (363)
T ss_pred HHHHHHHHHHhC--------CCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHc-CCceEEEe
Confidence 456777777765 444 4799999999999999999988999888877765444 2445555 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
+++ +..+|++.+++.+++ .++++++++++++||||..+| +++|+++|+++|+++|+|++++ ++.. +
T Consensus 109 ~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~g~~--~ 174 (363)
T TIGR02326 109 TGE--VEPPDVVEVEAILAA----DPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---FGGI--P 174 (363)
T ss_pred CCC--CCCCCHHHHHHHHhh----CCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc---ccCc--c
Confidence 763 456899999998864 235677889999999999987 5788999999999999998876 5433 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHHHHhc-------------------cc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAATKMS-------------------SF 302 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~~~~-------------------~~ 302 (464)
.++..+ +..+++.|++|.+ |.+| +||++++++.+........ ..
T Consensus 175 -~~~~~~-------------~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
T TIGR02326 175 -IDIAEL-------------HIDYLISSANKCIQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWR 238 (363)
T ss_pred -cchhhc-------------CccEEEecCccccccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCC
Confidence 232222 3457789999987 4455 7999996554432210000 11
Q ss_pred CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC---CccEEEEEecCcccccCChhHHHH
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS---NAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
++.+...+.++.++++.-.. ...+++.+++++++++++.+.|+++|+.+..+ .++...|+.++..... ...+
T Consensus 239 ft~~~~~~~al~~al~~l~~-~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 313 (363)
T TIGR02326 239 FTSPTHVVHAFAQALLELEK-EGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPDY----RFAD 313 (363)
T ss_pred CCCcHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCCC----CHHH
Confidence 23555666665555543110 11255677888999999999999888877543 3555677877642110 1123
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ecCCHHHHHHHHHHHHHHH
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICF-ANITEETLQVALQRIKVFA 429 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l 429 (464)
+.+.| +++||.++||..+. .+++||++ +..+.++++.++++|++++
T Consensus 314 v~~~L-~~~gi~v~~g~~~~---~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 314 FYQRL-KEQGFVIYPGKVSQ---VDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred HHHHH-HHCCEEEECCcCCC---CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 55555 57799999997652 46899996 5478999999999999875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=217.29 Aligned_cols=288 Identities=16% Similarity=0.248 Sum_probs=198.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCC-CCcEEEeCChHHHHHHHHHHhcC---CCCeEEEcCCCCCChh----hhcccCCCcE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFD-PNKLVLTAGSTAANETLMFCLAD---PGDAFLLPTPYYPGFD----RDLKWRPGVE 157 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~-~~~i~it~G~~~al~~~~~~l~~---~gd~Vlv~~p~y~~~~----~~~~~~~g~~ 157 (464)
..++|+.++++++ ++ +++|++|+|+++++..++.++.. +||+|++++++|+... ..++.. |++
T Consensus 45 ~~~~~~~la~~~~--------~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~-g~~ 115 (373)
T cd06453 45 YEAAREKVARFIN--------APSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERT-GAK 115 (373)
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhc-CcE
Confidence 4578888888875 45 78999999999999999999887 8999999999998742 233345 999
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccC
Q 037587 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD 237 (464)
Q Consensus 158 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~ 237 (464)
++.++.+ .++.+|++++++.+.+ ++++|++++|+||||.+++ +++|+++|+++|+++++|++|+..
T Consensus 116 ~~~v~~~--~~~~~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~--- 181 (373)
T cd06453 116 LKVVPVD--DDGQLDLEALEKLLTE------RTKLVAVTHVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAG--- 181 (373)
T ss_pred EEEeecC--CCCCcCHHHHHHHhcC------CceEEEEeCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcC---
Confidence 9999986 3567899999998864 7899999999999999987 567888888999999999998732
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc----------------
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS---------------- 301 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~---------------- 301 (464)
.. + .++..+ +..+++.|++|.++. .++||++++++ +.+.+.....
T Consensus 182 ~~--~-~~~~~~-------------~~d~~~~s~~K~~~~--~g~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 242 (373)
T cd06453 182 HM--P-VDVQDL-------------GCDFLAFSGHKMLGP--TGIGVLYGKEE-LLEEMPPYGGGGEMIEEVSFEETTYA 242 (373)
T ss_pred ce--e-eecccc-------------CCCEEEeccccccCC--CCcEEEEEchH-HhhcCCCeecCCCccccccccccccC
Confidence 11 1 111111 334667899999974 56899998554 3333322110
Q ss_pred -----c--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC--ccEEEEEecCccccc
Q 037587 302 -----F--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSN--AGLFCWVDMRHLLVS 371 (464)
Q Consensus 302 -----~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~f~~~~l~~~~~~ 371 (464)
+ .+++.....++..+++.-. +..+++.++..++.++++.+.|+++ ++++..+. .+.++++.++..
T Consensus 243 ~~~~~~~~~t~~~~~~~al~~al~~l~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 317 (373)
T cd06453 243 DLPHKFEAGTPNIAGAIGLGAAIDYLE--KIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI--- 317 (373)
T ss_pred CCccccCCCCCCHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc---
Confidence 1 1233333333333332111 1124556666777888888999887 67776321 234666776531
Q ss_pred CChhHHHHHHHHHHHhcCeEEeCCCCCC------CCCCCeEEEEeec-CCHHHHHHHHHHH
Q 037587 372 NTFEAEKELWKKIIFEVGLNISPGSSCH------CNEPGWFRICFAN-ITEETLQVALQRI 425 (464)
Q Consensus 372 ~~~~~~~~l~~~ll~~~gI~v~pg~~f~------~~~~~~~Ris~~~-~~~e~l~~~l~~l 425 (464)
...++.+.| .++||.+.+|..+. ...++++|++++. .++++++++++.|
T Consensus 318 ----~~~~i~~~l-~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 318 ----HPHDVATIL-DQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred ----CHHHHHHHH-HHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 112455555 56899998877543 1235789999987 6899999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-24 Score=210.75 Aligned_cols=299 Identities=16% Similarity=0.193 Sum_probs=203.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh--hhcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDP--NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD--RDLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~--~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~~g~~~~~v 161 (464)
..++|+.++++++ .++ +.|++++|+++++..++.++..+||.|++..++|.+.. ..++.. |++++.+
T Consensus 39 ~~~~~~~l~~l~~--------~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~-g~~~~~i 109 (368)
T PRK13479 39 TASVRAKLVAIAT--------GEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYL-GIAHVVL 109 (368)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHc-CCcEEEE
Confidence 4677777777765 333 56889999999999999999999999999988876542 445555 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+. ++.+|++++++.+++ .+++++|++++|+||||...| +++|.++|+++|+++|+|+++. |+..
T Consensus 110 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~---~g~~-- 175 (368)
T PRK13479 110 DTGE--DEPPDAAEVEAALAA----DPRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSS---FGAI-- 175 (368)
T ss_pred ECCC--CCCCCHHHHHHHHHh----CCCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEcccc---cCCc--
Confidence 9863 456899999998864 235678899999999999987 5677888889999999996654 5433
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHHHHhcc-------------------
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAATKMSS------------------- 301 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~~~~~------------------- 301 (464)
+ .++..+ +..+++.|++|.+ |.+| +||++++++.+ +.+.....
T Consensus 176 ~-~~~~~~-------------~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (368)
T PRK13479 176 P-IDIAEL-------------GIDALISSANKCIEGVPG--FGFVIARRSEL-EACKGNSRSLSLDLYDQWAYMEKTGQW 238 (368)
T ss_pred c-cccccc-------------CceEEEecCccccccCCC--ceEEEECHHHH-HHhhcCCCCeeecHHHHHhhhcccCCC
Confidence 1 222111 3346678999975 6677 69999965443 33322110
Q ss_pred cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ccEEEEEecCcccccCChhHHH
Q 037587 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN---AGLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 302 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~f~~~~l~~~~~~~~~~~~~ 378 (464)
.++.+...+.++..++..-.- ..++++..+++.++++.+.+.|+++|+.+..+. .+..+.+.++... .. +..
T Consensus 239 ~~t~~~~~~~~l~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~ 313 (368)
T PRK13479 239 RFTPPTHVVAAFYQALLELEE-EGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADP---AY-DFK 313 (368)
T ss_pred CCCCcHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCC---Cc-CHH
Confidence 113444444444444432110 112456667888899999999999998765332 2222323333211 00 112
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ecCCHHHHHHHHHHHHHHHHhhC
Q 037587 379 ELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-ANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++...|. ++||.|++|..+ ..+++|+++ +..++++++.++++|++++++..
T Consensus 314 ~l~~~L~-~~gi~v~~g~~~---~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 314 EFYERLK-EQGFVIYPGKLT---QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred HHHHHHH-HCCEEEecCCCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4666664 679999988644 246899986 65789999999999999988654
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=215.11 Aligned_cols=295 Identities=15% Similarity=0.206 Sum_probs=198.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hccc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~ 152 (464)
..+|+.+ ...+|++++|++.+ .+ ..++++|+++++..++ .++.+||.|+++.|+|+.... .+..
T Consensus 46 y~r~~~p-t~~~le~~la~l~g--------~~--~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~ 113 (366)
T PRK08247 46 YSRTGNP-TRGVLEQAIADLEG--------GD--QGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKK 113 (366)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC--------CC--cEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhc
Confidence 4556654 35789999999976 32 2467788889999876 577899999999999987433 3344
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |++++.++. .|++.+++++.+ ++++|++++|+||+|.. .++++|+++|+++|+++|+|++|.
T Consensus 114 ~-G~~v~~vd~-------~d~~~l~~~i~~------~tklv~le~P~NP~~~~---~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 114 W-NVRFVYVNT-------ASLKAIEQAITP------NTKAIFIETPTNPLMQE---TDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred c-CceEEEECC-------CCHHHHHHhccc------CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCc
Confidence 5 999988874 278899888764 78999999999998654 789999999999999999999996
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCC-CccEEEEEEecCHHHHHHHHHhccc--CCCChHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM-PGFRVGMIYSNNERVVSAATKMSSF--GLVSSQT 309 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~-~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~ 309 (464)
...+ .. + + ..+..+++.|+||.++- ++++.|+++++++.+.+.+...... ..++++.
T Consensus 177 ~~~~-~~-----p---~-----------~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~ 236 (366)
T PRK08247 177 TPVL-QR-----P---L-----------EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFD 236 (366)
T ss_pred cccc-cC-----c---h-----------hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHH
Confidence 3211 11 1 1 11456899999999963 3579999998655565544433322 2356677
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-e-ecCCccEEEEEecCcccccCChhHHH---HHHHH
Q 037587 310 QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR-C-LKSNAGLFCWVDMRHLLVSNTFEAEK---ELWKK 383 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~-~~~~~g~f~~~~l~~~~~~~~~~~~~---~l~~~ 383 (464)
|.++...++. +..+.+..+++++.+.+.|+++ ++. | .|+.||+|.| .+........+.+.. .++..
T Consensus 237 a~l~~~~l~t-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~~~l~~~~~~~s 308 (366)
T PRK08247 237 SWLLIRGMKT-------LALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDEEWVNPFLKSLKLITFAES 308 (366)
T ss_pred HHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCHHHHHHHHHcCCcceEccC
Confidence 7776665553 2334445688889999999987 665 3 4558898877 564200000000000 01111
Q ss_pred HHHhcCeEEeCCCCCCCC-----------CCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 384 IIFEVGLNISPGSSCHCN-----------EPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~~~-----------~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.....+.+.|++.++.. .++.+|+|++. |+.+.+++-|.+++++
T Consensus 309 lg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl---E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 309 LGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI---ENVEDLIADLKQAFKQ 364 (366)
T ss_pred CCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 112335666787655431 14579999995 5567777777777765
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=214.92 Aligned_cols=306 Identities=15% Similarity=0.192 Sum_probs=212.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCC-CCCcEEEeCChHHHHHHHHHHhc-----CC-CCeEEEcCCCCCChhhh--
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKF-DPNKLVLTAGSTAANETLMFCLA-----DP-GDAFLLPTPYYPGFDRD-- 149 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-~~~~i~it~G~~~al~~~~~~l~-----~~-gd~Vlv~~p~y~~~~~~-- 149 (464)
.|+. .+...+++++++++.. +.. ++++|++|+|+++++.+++.++. ++ ++.|++..+.|+.+...
T Consensus 35 ~~~~-~~~~~l~~a~~~~~~~-----~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~ 108 (382)
T TIGR03403 35 QFGT-ATHPAIAEALDKLYKG-----INARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCA 108 (382)
T ss_pred HHHH-HHHHHHHHHHHHHHHH-----cCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHH
Confidence 3443 3467899999888853 223 67899999999999999998762 45 46899988777655433
Q ss_pred -cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEe
Q 037587 150 -LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSD 228 (464)
Q Consensus 150 -~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~D 228 (464)
++.. |++++.+++++ ++.+|++.+++.+.+ +++++++++|+||||.+++. ++|.++|+++|+++++|
T Consensus 109 ~~~~~-G~~v~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~~---~~I~~la~~~g~~~ivD 176 (382)
T TIGR03403 109 FLESL-GVEVTYLPINE--QGTITAEQVREAITE------KTALVSVMWANNETGMIFPI---KEIGEICKERGVLFHTD 176 (382)
T ss_pred HHHHC-CCEEEEEecCC--CCCCCHHHHHHhccc------CCeEEEEEcccCCCccccCH---HHHHHHHHHcCCEEEEe
Confidence 3444 99999999874 356899999988864 67899999999999999884 56788888999999999
Q ss_pred ccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH-HHHH-----HHhccc
Q 037587 229 EIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV-VSAA-----TKMSSF 302 (464)
Q Consensus 229 eay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~-~~~~-----~~~~~~ 302 (464)
+++. ++.. + .++. ..+..+++.|++|.+|.+| +|+++.++... ...+ ......
T Consensus 177 ~a~~---~g~~--~-~~~~-------------~~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~ 235 (382)
T TIGR03403 177 AVQA---IGKI--P-VDVQ-------------KAGVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRS 235 (382)
T ss_pred chhh---cCCC--c-cCcc-------------ccCCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCccc
Confidence 9986 3222 1 1211 1133477899999988778 58876643211 0000 000123
Q ss_pred CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc---cEEEEEecCcccccCChhHHH
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNA---GLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~f~~~~l~~~~~~~~~~~~~ 378 (464)
++++.+.+.++..+++. ..++++..++++++.++++.+.|.++ |+.+..+.. ..++.+.++. . . ..
T Consensus 236 gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~~ 305 (382)
T TIGR03403 236 GTLNVPYIVAMGEAMRL---ANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKG-V-----E-GE 305 (382)
T ss_pred CCcChHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCC-C-----C-HH
Confidence 45667777666666642 23446667788888999999999876 777775431 2255555542 1 1 12
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCC-----------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 379 ELWKKIIFEVGLNISPGSSCHCN-----------------EPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~~~-----------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
++... |.++||.|+.|..|... ..+.+|+|++. .+++++++++++|++++++.+.
T Consensus 306 ~~~~~-L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 306 AMLWD-LNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred HHHHh-hccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34555 46789999987655311 12579999988 7999999999999998887653
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-24 Score=212.36 Aligned_cols=304 Identities=13% Similarity=0.142 Sum_probs=203.5
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~ 164 (464)
...++++.+|++++ + +++++++|+++++..++.+++++||.|+++.++|......+... |++++.++.+
T Consensus 64 ~~~~l~~~lA~~~g--------~--~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~-G~~~~~v~~~ 132 (387)
T PRK09331 64 PIADFHEDLAEFLG--------M--DEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERA-GLNVREVPKT 132 (387)
T ss_pred HHHHHHHHHHHHhC--------C--CcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHc-CCEEEEEeCc
Confidence 46889999999985 3 46788999999999999999999999999999987766666666 9999999974
Q ss_pred CCCCcccCHHHHHHHHHHHh-hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 165 SSNGFRITISALENAYQQAQ-TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~-~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
.+.++.+|++.+++.+++.. ..++++++|++++|+||||... ++++|+++|+++|+++|+|++|+. +.. +
T Consensus 133 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~---~l~~I~~la~~~g~~livD~a~~~---g~~--~- 203 (387)
T PRK09331 133 GYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLA---DAKKVAKVAHEYGIPFLLNGAYTV---GRM--P- 203 (387)
T ss_pred cCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccc---cHHHHHHHHHHcCCEEEEECCccc---CCc--C-
Confidence 33467799999999987531 1224789999999999999885 577888999999999999999983 221 1
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--------C-CCChHHHHHHH
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--------G-LVSSQTQYLLS 314 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--------~-~~s~~~q~~~~ 314 (464)
.+...+ +..+++.|++|+++ ++.|+||++++++.+....+....+ . +.......++.
T Consensus 204 ~~~~~~-------------g~D~~~~s~~K~l~-~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (387)
T PRK09331 204 VDGKKL-------------GADFIVGSGHKSMA-ASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLM 269 (387)
T ss_pred CCHHHc-------------CCCEEEeeCccccc-CCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHH
Confidence 121111 45578899999998 5669999999654333322221111 1 11111111111
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee---cCCccEEEEEecCcccc--cCChhHHHHHHHHHHHhc
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL---KSNAGLFCWVDMRHLLV--SNTFEAEKELWKKIIFEV 388 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~---~~~~g~f~~~~l~~~~~--~~~~~~~~~l~~~ll~~~ 388 (464)
..+ +...+..+ ..++..++.+++.+.|.++ |++++ ++..+ ++.++.+.... ........++...| +++
T Consensus 270 aal---~~~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~ 343 (387)
T PRK09331 270 ASF---PHVVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHD-LMKFETPSFDEIAKKHKRRGFFLYEEL-KKR 343 (387)
T ss_pred HHH---HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCC-eEEEeCCchhHHhhhccccchhHHHHH-HHc
Confidence 222 11122232 2333455667888999999 99887 33343 56666662100 00001112455665 577
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 389 GLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 389 gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
||...+. .....+|+.....++++++.++++|++++++.+
T Consensus 344 gI~~~~~-----~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~~ 383 (387)
T PRK09331 344 GIHGIKP-----GATKEFKLSTYGLTWEQVEYVADAFKEIAEKYG 383 (387)
T ss_pred CceEEcc-----CCceEEEEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 9984322 124467777744689999999999999987643
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=214.99 Aligned_cols=350 Identities=15% Similarity=0.106 Sum_probs=216.0
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||..+ .+.+. +|.+.+++.+.. .....|+...+..++...+++.+.+.++
T Consensus 29 ~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~-- 93 (413)
T cd00610 29 YLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQL-------------AKLTHFSLGFFYNEPAVELAELLLALTP-- 93 (413)
T ss_pred EEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHH-------------HhCcCccCcccCCHHHHHHHHHHHHhCC--
Confidence 3333455678999876 33443 466666665542 2234555433445666666666665543
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCC------------CcEEEEEecCCC----
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRP------------GVEIVPIHCSSS---- 166 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~------------g~~~~~v~~~~~---- 166 (464)
.+.+++++++|+++++..++..+. .+++.|++.+++|++......... +.+++.+|.++.
T Consensus 94 --~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (413)
T cd00610 94 --EGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPP 171 (413)
T ss_pred --CCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccch
Confidence 367899999999999999998873 578999999999988544322211 223555655421
Q ss_pred CCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 167 NGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 167 ~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
..+..|++.|++.+++. ..++++ ++++| +|++|.++ +.+.+++|.++|+++|+++|+||+|.++...+. . .
T Consensus 172 ~~~~~d~~~l~~~l~~~---~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~--~-~ 244 (413)
T cd00610 172 AELADDLEALEEALEEH---PEEVAA-VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK--M-F 244 (413)
T ss_pred hhHHHHHHHHHHHHhcC---CCCEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--h-h
Confidence 12445788888887541 124554 55556 67779876 677799999999999999999999986422221 1 1
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHH--HHhc--ccCCCChHHHHHHHHHcCCc
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA--TKMS--SFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~--~~~~--~~~~~s~~~q~~~~~~l~~~ 320 (464)
. .... +...-+.||||.++ .|+|+||++++ +.+.+.+ .... ..+..+++.+.++.+.++.-
T Consensus 245 ~-~~~~------------~~~~d~~t~sK~l~-~g~~~g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l 309 (413)
T cd00610 245 A-FEHF------------GVEPDIVTLGKGLG-GGLPLGAVLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL 309 (413)
T ss_pred h-Hhhc------------CCCCCeEEEccccc-CccccEEEEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 1 1111 11112458999999 58999999984 4455543 2222 12345667777766665321
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEEeC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNISP 394 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v~p 394 (464)
. + ....+.++++.+++.+.|++. ++.......|.++|+.++..... .......+++..++ ++||.+.|
T Consensus 310 ~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~ 383 (413)
T cd00610 310 E---E--EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRP 383 (413)
T ss_pred H---h--ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEee
Confidence 1 1 122334444445555555443 22222233467888888643110 01122335666665 67999998
Q ss_pred CCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 395 GSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 395 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
+. .+++|++++. .+++++++++++|++++
T Consensus 384 ~~------~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 384 SG------GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred cC------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 74 4679999876 68999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=210.41 Aligned_cols=309 Identities=16% Similarity=0.149 Sum_probs=222.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDP-NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVPI 161 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~v 161 (464)
+..++++.+.+.+.+.++ +++ +.+++++|+++++..++..++++||+|++.++.|.+. ...++.. |++++.+
T Consensus 39 ~~~~~~~~~~~~l~~~~g----~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~-g~~v~~v 113 (401)
T PLN02409 39 AFPALTKELLEDVKYIFK----TKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRL-NFDVDVV 113 (401)
T ss_pred HHHHHHHHHHHHHHHHhC----CCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHc-CCceEEE
Confidence 457788888888877766 443 4688899999999999999999999999999988655 3445555 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+.. ..+|++.+++.+++. .++++++|++++++||||.++|.+++.++++ |+++|+++|+|++++ ++..
T Consensus 114 ~~~~~--~~~~~~~l~~~l~~~--~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s---~g~~-- 183 (401)
T PLN02409 114 ESPWG--QGADLDILKSKLRQD--TNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSS---IGAL-- 183 (401)
T ss_pred ECCCC--CCCCHHHHHHHHhhC--cCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEcccc---cCCc--
Confidence 97643 347899999988641 0136899999999999999999877777766 999999999999987 3322
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc------------------c--
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS------------------S-- 301 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~------------------~-- 301 (464)
+ .++. ..+..+++.|.+|+++.| .++||++.+++.+ +.+.... .
T Consensus 184 ~-id~~-------------~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 247 (401)
T PLN02409 184 D-FRMD-------------EWGVDVALTGSQKALSLP-TGLGIVCASPKAL-EASKTAKSPRVFFDWADYLKFYKLGTYW 247 (401)
T ss_pred c-cccc-------------ccCccEEEEcCccccCcC-CCcceeEECHHHH-HHHhcCCCCCeecCHHHHHHHHhcCCCC
Confidence 1 1111 224557788889999643 3699999865543 3332210 0
Q ss_pred cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ccEEEEEecCcccccCChhHH
Q 037587 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN----AGLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 302 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~f~~~~l~~~~~~~~~~~~ 377 (464)
.++.+...+.++..+++.-. +..++..++++++..+++.+.|++.|++++.+. .+..+++.+|.....
T Consensus 248 ~~Tp~~~~~~al~~al~~~~--~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~~------ 319 (401)
T PLN02409 248 PYTPSIQLLYGLRAALDLIF--EEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGIDS------ 319 (401)
T ss_pred CCCccHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCCH------
Confidence 11334445555555554321 334677788888899999999988888876532 233456777643321
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 378 KELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.++...+++++||.+.+|..- ...+.|||+... .+++++..++++|++++.+...
T Consensus 320 ~~l~~~l~~~~~i~i~~G~~~--~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g~ 375 (401)
T PLN02409 320 AEIVKNAWKKYNLSLGLGLNK--VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVGY 375 (401)
T ss_pred HHHHHHHHHhCCEEEEcCCCc--ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 246777888899999988642 235789999966 7899999999999999988763
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=212.14 Aligned_cols=217 Identities=16% Similarity=0.168 Sum_probs=160.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcc----cCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLK----WRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~~g~~~~~v 161 (464)
..+|++.+|++++ .+.+++++|+++++..++.+++++||.|+++.|.|+.+...+. ...|++++.+
T Consensus 78 ~~~LE~~lA~l~g----------~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~ 147 (418)
T PLN02242 78 VLNLGRQMAALEG----------TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFV 147 (418)
T ss_pred HHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEc
Confidence 5788888888875 3456789999999999999999999999999999987765432 2238887766
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++.+++++++ .++++|++++|+||||.++ ++++|+++|+++|+++|+|++|..+.+..
T Consensus 148 d~~-------d~e~l~~~i~~-----~~tklV~lesp~NPtG~v~---dl~~I~~la~~~gi~livDea~~~~~~~~--- 209 (418)
T PLN02242 148 DIT-------DLEAVKKAVVP-----GKTKVLYFESISNPTLTVA---DIPELARIAHEKGVTVVVDNTFAPMVLSP--- 209 (418)
T ss_pred CCC-------CHHHHHHhcCc-----CCCEEEEEecCCCCCCccc---CHHHHHHHHHHhCCEEEEECCCCccCCCH---
Confidence 542 78888888753 1489999999999999987 57888889999999999999997543311
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccE-EEEEEecCHHHHHHHHHhcc----cCCCChHHHHHHHHH
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR-VGMIYSNNERVVSAATKMSS----FGLVSSQTQYLLSRM 316 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlR-iG~l~~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~ 316 (464)
..+ +..++++||||.++.+|.+ .||++++++ +.+.+..... ....+...|.++..+
T Consensus 210 -----~~~-------------g~divv~S~SK~l~g~g~~~gG~iv~~~~-li~~l~~~~~~~~~~~g~~~~~~~A~l~~ 270 (418)
T PLN02242 210 -----ARL-------------GADVVVHSISKFISGGADIIAGAVCGPAE-LVNSMMDLHHGALMLLGPTMNPKVAFELS 270 (418)
T ss_pred -----HHc-------------CCcEEEEeCccccCCCCCceEEEEEcCHH-HHHHHHHHhhhhhhccCCCCCHHHHHHHH
Confidence 111 3568899999999888877 599998554 4444443322 223344566666665
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK 354 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 354 (464)
.... . +..+++++.++++.+.+.|++++++|..
T Consensus 271 ~~l~-t----l~~r~~~~~~~a~~la~~L~~~~~~V~y 303 (418)
T PLN02242 271 ERLP-H----LSLRMKEHCRRAMEYAKRMKELGLKVIY 303 (418)
T ss_pred cCCC-c----HHHHHHHHHHHHHHHHHHHHhCCCEEEC
Confidence 5533 2 4445667888999999999998877763
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=209.77 Aligned_cols=286 Identities=15% Similarity=0.132 Sum_probs=186.9
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh-----cccCCCcEEEEEecCCCCCcccCHHHHHHHHH
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD-----LKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 181 (464)
++..+|++++| ++++..++.+++++||+|+++.|+|..+... +... |++++.+++++ +++.+|++++++.++
T Consensus 86 ~~~~~i~~~sg-t~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~i~ 162 (416)
T PRK00011 86 AEYANVQPHSG-SQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGK-LYNVVSYGVDE-ETGLIDYDEVEKLAL 162 (416)
T ss_pred CCceeeecCCc-hHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccc-eeeEeecCcCc-ccCCcCHHHHHHHHH
Confidence 45566766665 6789999999999999999999999765321 1222 67888887763 347899999999886
Q ss_pred HHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCC
Q 037587 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261 (464)
Q Consensus 182 ~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (464)
+ .++++|+++++++| ... ++++|.++|+++|+++|+|++|........ ..... + .
T Consensus 163 ~-----~~~k~v~~~~~~~~--~~~---~~~~I~~la~~~~~~livD~a~~~g~~~~g--~~~~~--~-----------~ 217 (416)
T PRK00011 163 E-----HKPKLIIAGASAYS--RPI---DFKRFREIADEVGAYLMVDMAHIAGLVAAG--VHPSP--V-----------P 217 (416)
T ss_pred h-----cCCCEEEECCCcCC--Ccc---CHHHHHHHHHHcCCEEEEECcchhcccccC--ccCCC--C-----------C
Confidence 4 16788888766554 333 478889999999999999999863211111 00110 0 1
Q ss_pred CCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCC---hHHHHHHHHHcCCchhhHHHHHHHHHHHHHHH
Q 037587 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVS---SQTQYLLSRMLSDKKFTCNYMKENRKRLRKRK 338 (464)
Q Consensus 262 ~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s---~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 338 (464)
...+++.|+||++ +|.|.||++++++.+.+.++.....+..+ ...+.++..++.. ...+.+++.++++++++
T Consensus 218 -~~di~~~S~~K~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~ 292 (416)
T PRK00011 218 -HADVVTTTTHKTL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKE--ALEPEFKEYAQQVVKNA 292 (416)
T ss_pred -CCcEEEecCCcCC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHH
Confidence 2346789999976 78899999997666666665544332211 1222222222211 11234567778888899
Q ss_pred HHHHHHHHhCCCeeecC-CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC-CCC---CCCCCeEEEEee--
Q 037587 339 EMLVSGLKVAGIRCLKS-NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS-SCH---CNEPGWFRICFA-- 411 (464)
Q Consensus 339 ~~l~~~l~~~g~~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~-~f~---~~~~~~~Ris~~-- 411 (464)
+++.+.|++.|+++.+. ..++++|+.++... . ...++.. .|+++||.+..+. .+. +..+..+|++..
T Consensus 293 ~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~----~-~~~~~~~-~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~ 366 (416)
T PRK00011 293 KALAEALAERGFRVVSGGTDNHLVLVDLRSKG----L-TGKEAEA-ALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAI 366 (416)
T ss_pred HHHHHHHHhCCCeeeecCCCCeEEEEeCcccC----C-CHHHHHH-HHHHcCcEEccCcCCCCCCCCCCCCceEecCHHH
Confidence 99999999989877641 22378999986321 0 1123444 4567899997432 111 112456999641
Q ss_pred ---cCCHHHHHHHHHHHHHHHHh
Q 037587 412 ---NITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 412 ---~~~~e~l~~~l~~l~~~l~~ 431 (464)
.+++++++.+++.|++++..
T Consensus 367 ~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 367 TTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred hhcCcCHHHHHHHHHHHHHHHhc
Confidence 24689999999999998886
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=212.03 Aligned_cols=327 Identities=17% Similarity=0.168 Sum_probs=216.2
Q ss_pred CceEEeecccccccHHH-HHHHHHhhhhhHHhhhcccccccccccCCC-----CCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 36 SGIIQMGLAENQLSFDL-LESWLASNQEAVELKRNGESLFRELALFQD-----YHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
.+++.|+++...+++|. +.++..+. .....|.+ ..|.+++++++++++.+.++ ++.
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g----~~~ 81 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILEN--------------EFYTAYTPYQPEISQGRLQALFELQTMLCELTG----MDV 81 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccc--------------cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHC----CCc
Confidence 35689999888886544 44433331 01234544 57889999999999998876 455
Q ss_pred CcEEEeC-ChHHHHHHHHHHhcCC--CCeEEEcCCCCCChhhhcccCCC----cEEEEEecCCCCCcccCHHHHHHHHHH
Q 037587 110 NKLVLTA-GSTAANETLMFCLADP--GDAFLLPTPYYPGFDRDLKWRPG----VEIVPIHCSSSNGFRITISALENAYQQ 182 (464)
Q Consensus 110 ~~i~it~-G~~~al~~~~~~l~~~--gd~Vlv~~p~y~~~~~~~~~~~g----~~~~~v~~~~~~~~~~d~~~l~~~i~~ 182 (464)
+++++++ |++++...++.+++.+ ||.|++++|.|+.+...+... | ++++.++.+. ++.+|++.+++.+.+
T Consensus 82 ~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~-~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~ 158 (398)
T cd00613 82 ANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTR-GEPLGIEVVEVPSDE--GGTVDLEALKEEVSE 158 (398)
T ss_pred cceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHh-cccCCcEEEEeccCC--CCCcCHHHHHHhcCC
Confidence 5777776 4545555666666666 999999999999887776554 5 8888888753 456899999988753
Q ss_pred HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCC
Q 037587 183 AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (464)
++++|++++|+ |||.+. +.+++|.++|+++|+++|+|+++.... .. .... ..
T Consensus 159 ------~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~--~~----~~~~-------------~~ 210 (398)
T cd00613 159 ------EVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLT--GL----KPPG-------------EY 210 (398)
T ss_pred ------CeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEecccccc--CC----CChH-------------Hc
Confidence 78999999985 899984 457999999999999999999875321 11 0100 12
Q ss_pred CcEEEEcCCCcCCCCC----ccEEEEEEecCHHHHHHHHHh------------------------------cc-cCCCC-
Q 037587 263 SRIHIVYSLSKDFSMP----GFRVGMIYSNNERVVSAATKM------------------------------SS-FGLVS- 306 (464)
Q Consensus 263 ~~vi~l~S~SK~~g~~----GlRiG~l~~~~~~~~~~~~~~------------------------------~~-~~~~s- 306 (464)
+..+++.|+||.+ +| |+|+||++.+++ +.+.+... .. ....+
T Consensus 211 ~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~ 288 (398)
T cd00613 211 GADIVVGNLQKTG-VPHGGGGPGAGFFAVKKE-LVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQA 288 (398)
T ss_pred CCCEEEeeccccC-CCCCCCCCceeEEEEhhh-hHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHH
Confidence 4568899999998 55 799999998554 33322000 00 01111
Q ss_pred hHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEE--EEEecCcccccCChhHHHHHHHHH
Q 037587 307 SQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF--CWVDMRHLLVSNTFEAEKELWKKI 384 (464)
Q Consensus 307 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f--~~~~l~~~~~~~~~~~~~~l~~~l 384 (464)
...+.+...+.... ...+++.+++++++++++.+.|++++... .+.+.++ ++++++... . ....+++..|
T Consensus 289 ~~~~~a~~~l~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~---~-~~~~~~~~~L 360 (398)
T cd00613 289 LLALMAAMYIVYLG---PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLY---G-IRAEDLAKAL 360 (398)
T ss_pred HHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcc---h-HHHHHHHHhh
Confidence 12333333332221 23466777888889999999999875433 2233333 566665310 0 1233567776
Q ss_pred HHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHH
Q 037587 385 IFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRI 425 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l 425 (464)
+ ++||.+.... ....+.+|+++.. .++++++++++.|
T Consensus 361 ~-~~gi~~~~~~---~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 361 I-DGGFHAPTMY---LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred h-hcCccccccc---cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 5 6699864321 1235789999977 7899999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=210.90 Aligned_cols=298 Identities=15% Similarity=0.172 Sum_probs=210.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC------------C--CCeEEEcCCCCC
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD------------P--GDAFLLPTPYYP 144 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~------------~--gd~Vlv~~p~y~ 144 (464)
.|....+..++++++++++.+.+|. +.+++++++|+|+++++..++.++.. + ++.|+++.++|.
T Consensus 29 ~y~~~~~~~~le~~~~~~~~~~~g~--~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~ 106 (345)
T cd06450 29 TWDESPAATEMEAEVVNWLAKLFGL--PSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHV 106 (345)
T ss_pred ccccCchhHHHHHHHHHHHHHHhCC--CCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchh
Confidence 4777778899999999999988772 22456899999999999999988742 2 347888999998
Q ss_pred ChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeE
Q 037587 145 GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIH 224 (464)
Q Consensus 145 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~ 224 (464)
.+...+... |.+++.++++++ +.+|++.|++.+.+....+.++++|++++|+||||.+. ++++|+++|+++|++
T Consensus 107 ~~~~~~~~~-g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~---~~~~i~~~~~~~~~~ 180 (345)
T cd06450 107 SVEKAAAYL-DVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID---PLEEIADLAEKYDLW 180 (345)
T ss_pred HHHHHHHHH-hcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC---CHHHHHHHHHHhCCe
Confidence 887777766 999999998753 47899999999976444555778889999999999984 578889999999999
Q ss_pred EEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCC
Q 037587 225 IVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL 304 (464)
Q Consensus 225 lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~ 304 (464)
+++|++|+.+.+... ..... ... ..+...+..|++|.++ ++.++|+++.+
T Consensus 181 l~vD~a~~~~~~~~~--~~~~~---~~~--------~~~~d~~~~s~~K~l~-~p~g~g~~~~~---------------- 230 (345)
T cd06450 181 LHVDAAYGGFLLPFP--EPRHL---DFG--------IERVDSISVDPHKYGL-VPLGCSAVLVR---------------- 230 (345)
T ss_pred EEEechhhHHHhhCh--hhHHH---hcC--------ccccCEEEEchhHhhC-CCcchHHHHHH----------------
Confidence 999999986543221 10110 010 1123455679999775 77789988764
Q ss_pred CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cCCccEEEEEecCcccccCChhHHHHHHH
Q 037587 305 VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL-KSNAGLFCWVDMRHLLVSNTFEAEKELWK 382 (464)
Q Consensus 305 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~ 382 (464)
.+.+.++...+... .+++.++...+.++++.+.|.++ ++.+. +++++ ++.+.++.... .. ....++..
T Consensus 231 --~~~~~~~l~~l~~~-----g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-iv~f~~~~~~~-~~-~~~~~i~~ 300 (345)
T cd06450 231 --ALKLWATLRRFGRD-----GYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLS-LVCFRLKPSVK-LD-ELNYDLSD 300 (345)
T ss_pred --HHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcee-EEEEEECCcch-hh-HHHHHHHH
Confidence 33444444444432 24556666777888888888887 67665 35666 44455543100 01 12234666
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCeEEEEeec-C-CHHHHHHHHHHHHH
Q 037587 383 KIIFEVGLNISPGSSCHCNEPGWFRICFAN-I-TEETLQVALQRIKV 427 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~-~~e~l~~~l~~l~~ 427 (464)
.| .++|+.+.++..+. ..+++|++++. . ++++++++++.|++
T Consensus 301 ~L-~~~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 301 RL-NERGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred HH-HhcCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 66 46666666554443 46789999986 3 88999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=201.74 Aligned_cols=297 Identities=17% Similarity=0.189 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC----CCCeEEEcCCCCCChhhhcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD----PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~----~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~ 162 (464)
.++.+.+.+.+.+.+| ++++++++++|+++++..++.++.. +|++|++.++.|..+...++.. |++++.++
T Consensus 58 ~~~~~~~~~~la~~~g----~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~-g~~~~~v~ 132 (371)
T PRK13520 58 AKLEEEAVEMLGELLH----LPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADML-GVELRRAP 132 (371)
T ss_pred HHHHHHHHHHHHHHhC----CCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHc-CceEEEec
Confidence 4433444444444333 5566889999999999999877654 5789999999998888777766 99999998
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.+. ++.+|++.|++.+.+ +++.|++++++||||.+.+ +++|.++|+++|+++++|++|..+...... .
T Consensus 133 ~~~--~~~~d~~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~-~ 200 (371)
T PRK13520 133 LDD--DYRVDVKAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLD-D 200 (371)
T ss_pred CCC--CCcCCHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhc-C
Confidence 763 457899999999875 6777888888999999976 677788888999999999999864321110 0
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC----------CCChHHHHH
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG----------LVSSQTQYL 312 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~----------~~s~~~q~~ 312 (464)
... ... . ..+...+..|.+| ++++|.++|+++..++.+...+....++. +.+.....+
T Consensus 201 ~~~-~~~-~---------~~~vd~~~~s~~K-~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~ 268 (371)
T PRK13520 201 PPN-FDF-S---------LPGVDSITIDPHK-MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAA 268 (371)
T ss_pred CCC-ccc-c---------CCCCceEEECCcc-ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHH
Confidence 000 001 0 1123344557788 45688899988876665544443222221 112233444
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeE
Q 037587 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR-CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLN 391 (464)
Q Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~ 391 (464)
+..+++.-. .+.+++.+++..+.++++.+.|++.|++ +..+..+ ++.++++. ..++...|. ++||.
T Consensus 269 ~~~al~~l~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---------~~~v~~~L~-~~gi~ 335 (371)
T PRK13520 269 TYAVMKYLG--REGYRKVVERCMENTRWLAEELKERGFEPVIEPVLN-IVAFDDPN---------PDEVREKLR-ERGWR 335 (371)
T ss_pred HHHHHhhhc--HhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCce-EEEEecCC---------HHHHHHHHH-HCCce
Confidence 444443211 2234566777778888999999888887 5556665 66677652 124556654 56999
Q ss_pred EeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 392 ISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 392 v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
|.++. .++++||+++. .++++++.+++.|+++++
T Consensus 336 v~~~~-----~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 336 VSVTR-----CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred eccCC-----CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 98753 24689999875 689999999999998765
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=207.85 Aligned_cols=293 Identities=16% Similarity=0.204 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEcCCCCCChhh---hcccCCCcEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA---DPGDAFLLPTPYYPGFDR---DLKWRPGVEIVP 160 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~---~~~~~~g~~~~~ 160 (464)
.++|+.++++++ +++++|++|+|+++++..++.++. .+|+.|++....|+.+.. .++.. |++++.
T Consensus 45 ~~~r~~la~~~g--------~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~-G~~v~~ 115 (379)
T TIGR03402 45 EEAREQVAKLLG--------AEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQ-GYKVTY 115 (379)
T ss_pred HHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHc-CCEEEE
Confidence 466677777765 678899999999999999988764 456889998888876543 23334 999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++++. ++.+|++.+++.+++ +++++++++++||||.++|. ++|.++|+++|+++++|++++ ++..
T Consensus 116 v~~~~--~g~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~~---~~I~~l~~~~g~~vivD~~~~---~g~~- 180 (379)
T TIGR03402 116 LPVDE--EGRLDLEELRAAITD------DTALVSVMWANNETGTIFPI---EEIGEIAKERGALFHTDAVQA---VGKI- 180 (379)
T ss_pred EccCC--CCcCCHHHHHHhcCC------CcEEEEEEcccCCeeecccH---HHHHHHHHHcCCEEEEECccc---cccc-
Confidence 98763 456899999998864 78899999999999999885 568888999999999999997 3322
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHH-HH-----HHhcccCCCChHHHHHHH
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVS-AA-----TKMSSFGLVSSQTQYLLS 314 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~-~~-----~~~~~~~~~s~~~q~~~~ 314 (464)
+ .++.. .+..+++.|.+|.+|.+| +|+++.+++.... .. ......++.+.....++.
T Consensus 181 -~-~~~~~-------------~~~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~ 243 (379)
T TIGR03402 181 -P-IDLKE-------------MNIDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLG 243 (379)
T ss_pred -c-cCccc-------------CCCCEEEEcHHHcCCCCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHH
Confidence 1 12111 144567788899777666 7888765432100 00 000112234444444444
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeecCC-----ccEEEEEecCcccccCChhHHHHHHHHHHHh
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV-A-GIRCLKSN-----AGLFCWVDMRHLLVSNTFEAEKELWKKIIFE 387 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~-----~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~ 387 (464)
++++. ..++++...+.+++.++++.+.|.+ + ++.+..+. +...+|++... ..++... |++
T Consensus 244 ~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-l~~ 310 (379)
T TIGR03402 244 KAAEL---ATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIE---------GEAILLL-LDM 310 (379)
T ss_pred HHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCC---------HHHHHHh-hcc
Confidence 44432 2345666667778888888888875 4 66665432 22334443221 1235554 467
Q ss_pred cCeEEeCCCCCCCCC-----------------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 388 VGLNISPGSSCHCNE-----------------PGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 388 ~gI~v~pg~~f~~~~-----------------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+||.|++|..|.... .+.+|+|++. .++++++++++.|++++++.+
T Consensus 311 ~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~ 374 (379)
T TIGR03402 311 EGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred CCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999998765431 3689999988 799999999999999987754
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=201.81 Aligned_cols=291 Identities=14% Similarity=0.161 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc------CCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA------DPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~------~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
.++++.+|++++ ++++++++++|+++++..++.++. ++||.|++++++|..+...++.. |++++.
T Consensus 62 ~~~~~~la~~~g--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~-G~~~~~ 132 (373)
T TIGR03812 62 EEVVGSLGNLLH--------LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEML-GLELRY 132 (373)
T ss_pred HHHHHHHHHHhC--------CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHc-CCeEEE
Confidence 445555665554 667889999999999988877654 46799999999999888877766 999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccC--C
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD--S 238 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~--~ 238 (464)
++.+. ++.+|++++++.+.+ ++..++++.|+||||.+.+ +++|.++|+++|+++|+|++|..+... .
T Consensus 133 v~~~~--~~~~d~~~l~~~l~~------~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~ 201 (373)
T TIGR03812 133 APLDE--DYTVDVKDVEDLIDD------NTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLK 201 (373)
T ss_pred EeeCC--CCCcCHHHHHHHHhh------CcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHh
Confidence 99763 567899999998865 4445555568999999965 666788888999999999999754221 0
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC----------CCChH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG----------LVSSQ 308 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~----------~~s~~ 308 (464)
.......+ .+. ......+..|.+| +++++.|+|+++..++.+.+.+....++. +.+..
T Consensus 202 ~~~~~~~~-d~~----------~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~ 269 (373)
T TIGR03812 202 KGYNPPPF-DFS----------LPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGA 269 (373)
T ss_pred cCCCCCCc-ccc----------CCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhH
Confidence 00000000 000 0012233457889 66688899877654554544443222221 12223
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eecCCccEEEEEecCcccccCChhHHHHHHHHHHHh
Q 037587 309 TQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR-CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFE 387 (464)
Q Consensus 309 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~ 387 (464)
...++..+++.-. ++.+++..+++.+.++++.+.|+++|+. +.++..+ ++.+.++.. .++...| .+
T Consensus 270 ~~~~~~~~l~~l~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~~---------~~v~~~L-~~ 336 (373)
T TIGR03812 270 SAAATYAVIKYLG--REGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLN-IVAFEVDDP---------EEVRKKL-RD 336 (373)
T ss_pred HHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCce-EEEEEeCCH---------HHHHHHH-HH
Confidence 3444444444211 3345667788888899999999988764 4455554 666766531 1455666 46
Q ss_pred cCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 388 VGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 388 ~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
+||.|+++. .++++|++++. .++++++.++++|++
T Consensus 337 ~gi~v~~~~-----~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 337 RGWYVSVTR-----CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred CCceeccCC-----CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 799998653 25689999976 689999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-23 Score=205.75 Aligned_cols=337 Identities=14% Similarity=0.128 Sum_probs=213.0
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+|||..+ .+.+ ..|.+.+++.+.... ...+..... .+....+++.+.+..
T Consensus 32 ~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~-------------~~~~~~~~~-~~~~~~l~~~l~~~~-- 95 (403)
T PRK05093 32 SRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEK-------------LWHISNVFT-NEPALRLAKKLIDAT-- 95 (403)
T ss_pred CEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHh-------------cCcccCccC-CHHHHHHHHHHHhhC--
Confidence 34445556778999765 3344 346666666554211 111111111 222345555554321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCCCChhhhcccCCC------------cEEEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA--------DPGDAFLLPTPYYPGFDRDLKWRPG------------VEIVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~~g------------~~~~~v~~ 163 (464)
..+.+++++++++++..+++... ...+.|+..+-+|++....+....| .+++.++.
T Consensus 96 ----~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (403)
T PRK05093 96 ----FAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF 171 (403)
T ss_pred ----CCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC
Confidence 23689999999999999988641 1235688888887765332111101 11222221
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM--THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~--s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
.|++.+++.+.+ ++++|++. |.||+|.++ +.+.+++|+++|++||+++|+||+|.++.+.+.
T Consensus 172 -------~d~~~l~~~l~~------~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-- 235 (403)
T PRK05093 172 -------NDLAAVKAVIDD------HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD-- 235 (403)
T ss_pred -------CCHHHHHHHhcC------CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--
Confidence 167888887743 67766665 888888765 889999999999999999999999997644433
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-c-ccCCCChHHHHHHHHHcCC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-S-SFGLVSSQTQYLLSRMLSD 319 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~-~~~~~s~~~q~~~~~~l~~ 319 (464)
. .+.. .. +. .++ +.||||+++ +|+|+||+++++ .+.+.+... . ..+..+++.|.++.++|+.
T Consensus 236 ~-~~~~-~~-~~-------~pd----i~s~sK~l~-~G~rig~vv~~~-~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~ 299 (403)
T PRK05093 236 L-FAYM-HY-GV-------TPD----ILTSAKALG-GGFPIGAMLTTA-EIASHFKVGTHGSTYGGNPLACAVAEAVFDI 299 (403)
T ss_pred c-hhhh-hc-CC-------CCC----EEEeccccc-CCcceEEEEEcH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 1 1111 11 11 112 569999999 999999999955 454444321 1 2234678889888886642
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPG 395 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg 395 (464)
.. ..+.++.++++++++.+.|++++ +....+..|+++|+.++.... ....+++..++ ++||.+.|+
T Consensus 300 ~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~~~~~l~-~~Gv~v~~~ 369 (403)
T PRK05093 300 IN-----TPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYK----GRARDFLNAAA-EEGVMVLVA 369 (403)
T ss_pred Hh-----hccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcch----hHHHHHHHHHH-HCCeEEecC
Confidence 11 12344667778888888887753 222344568999999864210 12346777776 469999874
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 396 SSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 396 ~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+.+++||+++. .+++++++++++|++++.+.
T Consensus 370 ------g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 370 ------GPDVLRFAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred ------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 24689998776 58999999999999998653
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=203.10 Aligned_cols=299 Identities=15% Similarity=0.104 Sum_probs=199.2
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEEEec
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
..+|.+.+|++++ . +..++++++++++..++.++.. +||.|++....|......+... |.++..++.
T Consensus 92 ~~~le~~la~~~g---------~-~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~-g~~~~~~~~ 160 (406)
T PRK13393 92 HVLLEAELADLHG---------K-EAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHS-RAEKRIFRH 160 (406)
T ss_pred HHHHHHHHHHHhC---------C-CcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHc-CCeEEEeCC
Confidence 3566666776653 2 3445555555788888887765 7887777777776666666655 777766653
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
.|++.+++.++.. ..+++++|++++++||+|.+.+ +++|.++|+++++++|+||+|+...++..+
T Consensus 161 -------~d~~~l~~~l~~~--~~~~~~~v~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G--- 225 (406)
T PRK13393 161 -------NDPADLERKLSDL--DPHRPKLVAFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRG--- 225 (406)
T ss_pred -------CCHHHHHHHHHhc--cCCCCEEEEEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCC---
Confidence 3677787776532 1235788899999999999987 777888888999999999999844344331
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-c---CCCChHHHHHHHHHcCC
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-F---GLVSSQTQYLLSRMLSD 319 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-~---~~~s~~~q~~~~~~l~~ 319 (464)
..+... .++ ..+.+++++||||+||++| ||++++ +.+.+.+..... + ...++..+.++.++++.
T Consensus 226 ~g~~~~-~~~-------~~~~~i~~~tlsKa~g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~ 293 (406)
T PRK13393 226 GGIAER-EGL-------ADRLTIIEGTLAKAFGVMG---GYITGS-AALCDFIRSFASGFIFTTSLPPAVAAGALASVRH 293 (406)
T ss_pred Cchhhh-cCC-------CCCCeEEEEeCchhhcccC---ceeeCC-HHHHHHHHHhCcCceecCccCHHHHHHHHHHHHH
Confidence 111111 111 1234677899999999888 999884 445555544332 2 12345556666666653
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH 399 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~ 399 (464)
.. +.. ..+..+.++++++.+.|++.|+++.++.++ ++.+.++.. ....++...|++++||.++++....
T Consensus 294 ~~---~~~-~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-i~~v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~ 362 (406)
T PRK13393 294 LK---ASS-AERERHQDRVARLRARLDKAGIPHLPNPSH-IVPVMVGDP------VLCKQISDELLDRYGIYVQPINYPT 362 (406)
T ss_pred Hh---hCH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-eEEEEeCCH------HHHHHHHHHHHHhCCEEEEeECCCC
Confidence 21 111 224556778889999998888887777776 555544321 1234577777765799999865432
Q ss_pred C-CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 400 C-NEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 400 ~-~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
. .+.+++||+++. .+++++++++++|++++++..
T Consensus 363 ~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~~ 398 (406)
T PRK13393 363 VPRGTERLRITPSPLHTDADIEHLVQALSEIWARLG 398 (406)
T ss_pred CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 2 234689999976 689999999999999987653
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=205.94 Aligned_cols=295 Identities=16% Similarity=0.157 Sum_probs=198.6
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccCCCcEE
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKFD-PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWRPGVEI 158 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~~-~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~~g~~~ 158 (464)
.+..++|+.++++++ ++ .++|++|+|+++++..++.+++++||+|++..++|+.+.. .++.. |+++
T Consensus 44 ~~~~~~~~~la~~~~--------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~ 114 (376)
T TIGR01977 44 REVEETRQLLAKLFN--------APSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQI-GVEI 114 (376)
T ss_pred HHHHHHHHHHHHHhC--------cCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHc-CcEE
Confidence 345688888888886 33 4589999999999999999999999999999999877543 23334 8999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
+.++.+. ++.+|++.+++.+++ ++++|++++|+||||.+++. ++|.++|+++|+++|+|++++ ++.
T Consensus 115 ~~v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~n~tG~~~~~---~~i~~l~~~~~~~livD~a~~---~g~ 180 (376)
T TIGR01977 115 TIVKCDN--EGLISPERIKRAIKT------NTKLIVVSHASNVTGTILPI---EEIGELAQENGIFFILDAAQT---AGV 180 (376)
T ss_pred EEEecCC--CCCcCHHHHHHhcCC------CCeEEEEECCCCCccccCCH---HHHHHHHHHcCCEEEEEhhhc---cCc
Confidence 9998763 466899999998854 78999999999999999984 567888889999999999997 322
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH----h--------------c
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK----M--------------S 300 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~----~--------------~ 300 (464)
. + ..+. ..+..+++.|++|.++.|. .+|.++..++.....+.. . .
T Consensus 181 ~--~-~~~~-------------~~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 243 (376)
T TIGR01977 181 I--P-IDMT-------------ELAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRF 243 (376)
T ss_pred c--C-CCch-------------hcCCCEEEecccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhc
Confidence 2 1 1111 1245577899999885332 356665544321111000 0 0
Q ss_pred ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC----CccEEEEEecCcccccCChh
Q 037587 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS----NAGLFCWVDMRHLLVSNTFE 375 (464)
Q Consensus 301 ~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g~f~~~~l~~~~~~~~~~ 375 (464)
...+.+.....++..+++.-. +.-.+..+++.++..+.+.+.|.+. |+++..+ ..+..+++.++.. .
T Consensus 244 ~~~t~~~~~~~a~~~al~~~~--~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~----- 315 (376)
T TIGR01977 244 ESGTLNTPGIAGLNAGIKFIE--KIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-D----- 315 (376)
T ss_pred cCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-C-----
Confidence 011233333333443432111 1123445666677777888888765 6766543 1233666776531 1
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCC--------CCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 376 AEKELWKKIIFEVGLNISPGSSCHC--------NEPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~pg~~f~~--------~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
..++...|.+++||.+.+|..+.. ...+.+||+++. .++++++.++++|++
T Consensus 316 -~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 316 -SEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred -HHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 124566665445999998875532 235789999987 799999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=201.52 Aligned_cols=337 Identities=14% Similarity=0.115 Sum_probs=212.5
Q ss_pred CCCCCCCCCceEEeecccc--cc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLAEN--QL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+.. .+ .+|.+.+++.+..+ ...... .....++++.+++++.+..+
T Consensus 21 ~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~-------------~~~~~~-~~~~~~~~~~la~~l~~~~~- 85 (377)
T PRK02936 21 TKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLD-------------DIWHVS-NLFTNSLQEEVASLLAENSA- 85 (377)
T ss_pred CEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-------------hccccc-cccCCHHHHHHHHHHHhcCC-
Confidence 3444455677899987642 23 34666666665422 111111 12347899999999975422
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc-CCC-CeEEEcCCCCCChhhhcccCCCcEEE---EEecCCCCCcc--cCHHHH
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA-DPG-DAFLLPTPYYPGFDRDLKWRPGVEIV---PIHCSSSNGFR--ITISAL 176 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~~~~g~~~~---~v~~~~~~~~~--~d~~~l 176 (464)
.+.+++++++++++..++.... .+| +.|++.+++|++.........+.... ..++.++..+. .|++.+
T Consensus 86 -----~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 160 (377)
T PRK02936 86 -----GDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKAL 160 (377)
T ss_pred -----CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHH
Confidence 3579999999999999998532 234 67999999987543221111122110 01111100010 167888
Q ss_pred HHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCc
Q 037587 177 ENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNI 255 (464)
Q Consensus 177 ~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~ 255 (464)
++.+.+ ++++|++..+++++|.. .+++.+++|.++|++||+++|+||+|.++.+.+. . .+.. ...
T Consensus 161 ~~~~~~------~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~-~~~~-~~~---- 226 (377)
T PRK02936 161 KEVMNE------EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT--L-FAYE-QFG---- 226 (377)
T ss_pred HHhccC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--h-hHHH-hhC----
Confidence 887753 78888888778999876 5789999999999999999999999987544332 1 1111 111
Q ss_pred CCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHH
Q 037587 256 DESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKR 333 (464)
Q Consensus 256 ~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 333 (464)
..+. +.||||.++ +|+|+||++++ +.+.+.+.... ..+..+++.|.++.++++.... ++ .++.
T Consensus 227 -----~~~d---i~t~sK~l~-~G~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~----~~~~ 291 (377)
T PRK02936 227 -----LDPD---IVTVAKGLG-NGIPVGAMIGK-KELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-PS----FLEE 291 (377)
T ss_pred -----CCCc---EEEEccccc-CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-cc----HHHH
Confidence 1122 237999999 99999999995 45555443322 2234678899998888864321 12 2334
Q ss_pred HHHHHHHHHHHHHhC--CCee---ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 037587 334 LRKRKEMLVSGLKVA--GIRC---LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRI 408 (464)
Q Consensus 334 ~~~~~~~l~~~l~~~--g~~~---~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ri 408 (464)
++++.+.+.+.|.+. ++.. ..+ .|+++|++++.. ...+... +.++||.+.|+. .+++||
T Consensus 292 ~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~--------~~~~~~~-l~~~gv~v~~~g------~~~lRi 355 (377)
T PRK02936 292 VQEKGEYFLQKLQEELEHLECVKNIRG-KGLMIGIECTEE--------VAPVIEQ-LREEGLLVLSAG------PNVIRL 355 (377)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEeEee-cceEEEEEecch--------HHHHHHH-HHHCCeEEecCC------CCEEEE
Confidence 445555555555542 2221 223 468999998742 2235554 467899998752 468999
Q ss_pred Eeec-CCHHHHHHHHHHHHHHH
Q 037587 409 CFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 409 s~~~-~~~e~l~~~l~~l~~~l 429 (464)
++.. .+++++++++++|++++
T Consensus 356 ~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 356 LPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred ECCcccCHHHHHHHHHHHHHhC
Confidence 9743 68999999999998763
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=205.95 Aligned_cols=349 Identities=13% Similarity=0.087 Sum_probs=217.7
Q ss_pred CCCCCCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCC-CCCCcHHHHHHHHHHHHHHcC
Q 037587 28 PYDQLHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQ-DYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~~ 102 (464)
.|..+.+...+||+..+. +.+ .+|.+.+++.+..+ +...|. +..+..+|+++|++++.
T Consensus 40 ~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~~~~~~~lae~l~~~~~---- 102 (423)
T TIGR00713 40 AYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALE-------------RGTSYGAPTEAEILLAKEIISRVP---- 102 (423)
T ss_pred CEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hCCcCCCCCHHHHHHHHHHHHhCC----
Confidence 344455667889998663 222 45667777666422 112333 34467889999998863
Q ss_pred CCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCC--CcEEEEEecCCC-------CCcc-
Q 037587 103 NKVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRP--GVEIVPIHCSSS-------NGFR- 170 (464)
Q Consensus 103 ~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~--g~~~~~v~~~~~-------~~~~- 170 (464)
..++|++++|+++++..+++... ...++|+...++|+++...+.... +......+..+. ..+.
T Consensus 103 -----~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (423)
T TIGR00713 103 -----SVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVL 177 (423)
T ss_pred -----cccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEe
Confidence 23689999999999999888632 345899999999998754322110 111110110000 0000
Q ss_pred --cCHHHHHHHHHHHhhcCCceEEEEE-eCCCCCCCCCCC-HHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccch
Q 037587 171 --ITISALENAYQQAQTLNLKVKGVLI-TNPSNPLGTAMT-HQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISI 246 (464)
Q Consensus 171 --~d~~~l~~~i~~~~~~~~~~~~vil-~~P~NPtG~~~s-~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~ 246 (464)
.|++++++.+.+. ..++++|++ +.|+| +|.+.+ .+.+++|.++|+++|+++|+||+|.++.++.. .....
T Consensus 178 ~~~d~~~l~~~i~~~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~--~~~~~ 251 (423)
T TIGR00713 178 PYNDLEALEEVFEEY---GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALG--GAQEY 251 (423)
T ss_pred CCCCHHHHHHHHHHc---CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcc--hhHHH
Confidence 1688998888631 236778777 47788 798887 58899999999999999999999987633221 11111
Q ss_pred hhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc-----ccCCCChHHHHHHHHHcCCch
Q 037587 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS-----SFGLVSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~ 321 (464)
..+ . +. +.||||.+| +|+|+||+++++ .+.+.+.... ..+..+++++.++.+.|+..+
T Consensus 252 ~~~-----------~-pD---i~t~sK~l~-~G~pig~v~~~~-~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~ 314 (423)
T TIGR00713 252 FGV-----------E-PD---LTTLGKIIG-GGLPVGAFGGRR-EIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLD 314 (423)
T ss_pred hCC-----------C-cc---hhhhhhhhc-CCCceeeeeEHH-HHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHh
Confidence 111 1 22 348999999 999999999954 4555443211 122467788888777765221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cCCccEEEEEecCcccc-------cCChhHHHHHHHHHHHhcCeEEe
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL-KSNAGLFCWVDMRHLLV-------SNTFEAEKELWKKIIFEVGLNIS 393 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~f~~~~l~~~~~-------~~~~~~~~~l~~~ll~~~gI~v~ 393 (464)
- ..+.++.++..+..++.+.+.++++++.+. .+.++ ++.+.+..... ..+......++..++ ++||.+.
T Consensus 315 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~ 391 (423)
T TIGR00713 315 E-EGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGS-MFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLP 391 (423)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecc-EEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEe
Confidence 1 113555666666677778887887776553 23444 44443321100 001111224666666 5799987
Q ss_pred CCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 394 PGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 394 pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
++ .| +.+|+++. .+++++++++++|.+++++
T Consensus 392 ~~-~~-----~~~~l~~~-~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 392 PS-QF-----EACFLSAA-HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred cC-Cc-----cceeeECC-CCHHHHHHHHHHHHHHHhh
Confidence 54 22 34788887 5899999999999998865
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=210.40 Aligned_cols=292 Identities=15% Similarity=0.214 Sum_probs=197.5
Q ss_pred HHHHHHHHHHH---HHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCChhhhccc---CCCcEEE
Q 037587 87 PDAKKELVKLM---ARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-DPGDAFLLPTPYYPGFDRDLKW---RPGVEIV 159 (464)
Q Consensus 87 ~~lr~~ia~~~---~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~---~~g~~~~ 159 (464)
..++++++++. .+.+| ++++++.+|+|+++++..++.++. .+||+|+++++.|+.+...+.. ..|++++
T Consensus 108 ~g~~~~~~e~~~~la~l~g----~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~ 183 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTG----MDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVV 183 (447)
T ss_pred hHHHHHHHHHHHHHHHHhC----CCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEE
Confidence 45666666443 55555 567789999999999999988874 7899999999999888766543 2389999
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEE--eccccccccC
Q 037587 160 PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVS--DEIYSGTVFD 237 (464)
Q Consensus 160 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~--Deay~~~~~~ 237 (464)
.+++++ + .+|++++++.+.+ ++++|++++| ||||.+. ++++|.++|+++|+++|+ |.+.... +
T Consensus 184 ~v~~~~--~-~~d~~~l~~~i~~------~t~~v~l~~p-n~tG~v~---~l~~I~~~a~~~~~~~iv~~d~~~~g~-~- 248 (447)
T PRK00451 184 EVPYED--G-VTDLEALEAAVDD------DTAAVVVQYP-NFFGVIE---DLEEIAEIAHAGGALFIVGVDPVSLGL-L- 248 (447)
T ss_pred EecCCC--C-CCCHHHHHHhcCC------CeEEEEEECC-CCCCeeC---CHHHHHHHHHHCCCEEEEEcChHHhcc-C-
Confidence 999874 3 7899999998854 7899999999 8999995 478888999999999888 4332110 1
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEc---CCCcCCCCCccEEEEEEecCHHHHHH-------------------
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVY---SLSKDFSMPGFRVGMIYSNNERVVSA------------------- 295 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~---S~SK~~g~~GlRiG~l~~~~~~~~~~------------------- 295 (464)
.. . . ..+..+++. +|||.+++.|+|+||++++++.+...
T Consensus 249 ~~----~------~---------~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 309 (447)
T PRK00451 249 KP----P------G---------EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVL 309 (447)
T ss_pred CC----c------c---------cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEe
Confidence 00 0 0 123344444 78888888899999998855433321
Q ss_pred --------HHHhcccCCCC--hHHH-HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEE-
Q 037587 296 --------ATKMSSFGLVS--SQTQ-YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCW- 362 (464)
Q Consensus 296 --------~~~~~~~~~~s--~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~- 362 (464)
.+........+ ...+ .++...+... ..+.+++.++++.++++++.+.|.++ |+++. .+++|.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~ 385 (447)
T PRK00451 310 TLQAREQHIRREKATSNICTNQALNALAAAIYMSLL--GPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEF 385 (447)
T ss_pred eccccccccccccccccccccHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEE
Confidence 01111111111 1223 2222222211 13447788889999999999999988 67775 3444543
Q ss_pred -EecCcccccCChhHHHHHHHHHHHhcCeEE-eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 363 -VDMRHLLVSNTFEAEKELWKKIIFEVGLNI-SPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 363 -~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v-~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
++++. ...+++++|++ +||.+ .++..|.+...+++|++++. .++++++++++.|++++
T Consensus 386 ~v~~~~--------~~~~~~~~L~~-~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 386 VVRLPK--------PAEEVNEALLE-KGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred EEecCC--------CHHHHHHHHHh-cCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 55431 12357777764 57663 45666654445789999974 68999999999998764
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=202.70 Aligned_cols=331 Identities=16% Similarity=0.119 Sum_probs=204.4
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ ...+ ..|.+.+++.+..+. .....++- ..+....+++.+.+..
T Consensus 32 ~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~----------~~~~~~~~----~~~~~~~l~~~l~~~~-- 95 (396)
T PRK04073 32 VWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADK----------VTLTSRAF----HSDQLGPWYEKVAKLT-- 95 (396)
T ss_pred cEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhh----------cccccccc----CCHHHHHHHHHHHhcC--
Confidence 34444556778998654 2223 346666666554221 11111111 1233344444444321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC---------CC-CeEEEcCCCCCChhhhcccCCCcE------------EEEE
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD---------PG-DAFLLPTPYYPGFDRDLKWRPGVE------------IVPI 161 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~---------~g-d~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v 161 (464)
..+.+++++++++++..+++.... +| ++|+..+-+|++....+....+.. +..+
T Consensus 96 ----~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (396)
T PRK04073 96 ----GKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKI 171 (396)
T ss_pred ----CCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEe
Confidence 236899999999999999887531 34 678888777776542221111211 1122
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHH-HHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQ-ELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~-~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+. .|++.+++.+.+ ++++|++..|+||||.+++.+ .+++|.++|+++|+++|+||+|.++...+.
T Consensus 172 ~~-------~d~~~l~~~i~~------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~- 237 (396)
T PRK04073 172 PY-------GDLEALKAAITP------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK- 237 (396)
T ss_pred CC-------CCHHHHHHhccc------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH-
Confidence 21 167888887753 678878877799999998765 699999999999999999999997433222
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcC
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLS 318 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~ 318 (464)
.+ . .+... .... +.+|||.+|.+|+|+||++++ +.+.+.+... ...+..+++.+.++.+.|+
T Consensus 238 -~~-~-~~~~~---------~~pd---i~~~sK~lg~gg~~ig~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~ 301 (396)
T PRK04073 238 -LF-A-CDWDN---------VTPD---MYILGKALGGGVFPISCVAAN-RDILGVFTPGSHGSTFGGNPLACAVSIAALE 301 (396)
T ss_pred -HH-H-hhhcC---------CCCC---EEEecccccCCCCcceEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 11 1 11111 1122 346899999888999999995 4455544332 2223467888888888775
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhCC---CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVAG---IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPG 395 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg 395 (464)
... + +...+..+++++++.+.|++++ +...++. |.|++++++. ...+++..++ ++||.+.+.
T Consensus 302 ~~~--~---~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~-g~~~~~~~~~--------~~~~~~~~l~-~~Gv~~~~~ 366 (396)
T PRK04073 302 VLE--E---EKLPERSLELGEYFKEQLKEIDNPMIKEVRGR-GLFIGVELNE--------PARPYCEALK-EEGLLCKET 366 (396)
T ss_pred HHH--h---cCHHHHHHHHHHHHHHHHHhhcCCcccceecc-eEEEEEEecc--------hHHHHHHHHH-HCCeEEecC
Confidence 211 0 1122334455677777777653 3333445 4678888763 1235666665 679999763
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 396 SSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 396 ~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
+++++||++.. .+++++++++++|++++
T Consensus 367 ------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 367 ------HETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred ------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 24689999754 68999999999999875
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=199.25 Aligned_cols=216 Identities=15% Similarity=0.220 Sum_probs=153.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----ccc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~ 152 (464)
..+|+. .+..+|++++|++++ .+++++++|+++++..++.+++++||.|+++.|.|+.+... +..
T Consensus 58 Y~r~~~-p~~~~Le~~iA~~~g----------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 126 (400)
T PRK06234 58 YSRLGN-PTSTEVENKLALLEG----------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTR 126 (400)
T ss_pred ccCCCC-ccHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhh
Confidence 344544 457999999999985 23578888888999999999999999999999999865543 344
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC--CeEEEEecc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK--RIHIVSDEI 230 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~--~~~lI~Dea 230 (464)
. |++++.++.. |++++++.+.+ ++++|++++|+||||.+.+ +++|.++|+++ |+++|+|++
T Consensus 127 ~-G~~v~~vd~~-------d~e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea 189 (400)
T PRK06234 127 Y-GVEVTFVDTS-------NLEEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNT 189 (400)
T ss_pred C-CeEEEEECCC-------CHHHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECC
Confidence 5 9999888753 68899888865 7899999999999999986 66677777776 899999999
Q ss_pred ccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHh--ccc--CCC
Q 037587 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKM--SSF--GLV 305 (464)
Q Consensus 231 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~--~~~--~~~ 305 (464)
|....+. . . ... +..+++.|+||.++.+|.|+ ||++++++ +.+.++.. ... ...
T Consensus 190 ~~~~~~~-~-----~-l~~-------------g~Divv~S~sK~l~g~g~~~gG~v~~~~~-~~~~l~~~~~~~~~g~~l 248 (400)
T PRK06234 190 FCTPYIQ-R-----P-LQL-------------GADVVVHSATKYLNGHGDVIAGFVVGKEE-FINQVKLFGIKDMTGSVI 248 (400)
T ss_pred CCchhcC-C-----c-hhh-------------CCcEEEeeccccccCCCCceeEEEEecHH-HHHHHHHHHHHHhcCCCC
Confidence 9854332 1 1 111 45588999999998889775 99998654 44444321 111 234
Q ss_pred ChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 306 SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 306 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
++.....+..-++. +..+.++..+....+.+.|+++
T Consensus 249 ~p~~a~l~~~~l~t-------l~~r~~~~~~na~~~a~~L~~~ 284 (400)
T PRK06234 249 GPFEAFLIIRGMKT-------LQIRMEKHCKNAMKVAKFLESH 284 (400)
T ss_pred CHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 55555544444443 2233344445666677777765
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=195.78 Aligned_cols=314 Identities=11% Similarity=0.130 Sum_probs=198.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEE
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIV 159 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~ 159 (464)
|+...++.+|++++|++++ ..+.+++++|.++.. .++.+++++||.|+++++.|..+...+... +.+++
T Consensus 39 yg~~~~~~~LE~~lA~~~g---------~e~al~~~sG~~a~~-~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~-~~~~~ 107 (392)
T PLN03227 39 YGTIDAHLELEQCMAEFLG---------TESAILYSDGASTTS-STVAAFAKRGDLLVVDRGVNEALLVGVSLS-RANVR 107 (392)
T ss_pred cCChHHHHHHHHHHHHHhC---------CCcEEEecCcHHHHH-HHHHHhCCCCCEEEEeccccHHHHHHHHHc-CCeEE
Confidence 7666678999999999986 246788888877777 666778999999999999999887776554 77777
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHhh--------cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 160 PIHCSSSNGFRITISALENAYQQAQT--------LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 160 ~v~~~~~~~~~~d~~~l~~~i~~~~~--------~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
.++.. |.+.+++.++.... ..+++++|++.+|.||+|.+.+ ++++.++|+++|+++|+||+|
T Consensus 108 ~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~ 177 (392)
T PLN03227 108 WFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESF 177 (392)
T ss_pred EeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECcc
Confidence 66543 34455554433221 1236788888889999999988 667889999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc---ccCC-CCh
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS---SFGL-VSS 307 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~---~~~~-~s~ 307 (464)
.-..++..+ ....+... .. ...+..+++.|+||.+|.. .|+++++ +.+.+.++... .++. .++
T Consensus 178 ~~g~~g~~G---~g~~~~~g-~~-----p~~~~Div~~slsk~~g~~---gg~v~~~-~~~~~~~~~~~~~~~~~~~~~p 244 (392)
T PLN03227 178 SFGTLGKSG---RGSLEHAG-LK-----PMVHAEIVTFSLENAFGSV---GGMTVGS-EEVVDHQRLSGSGYCFSASAPP 244 (392)
T ss_pred cccccCCCC---CcHHHHcC-CC-----CCCCceEEEeechhhhhcc---CcEEecC-HHHHHHHHHhCcCccccCCCCH
Confidence 722122211 12222211 00 0124578889999987644 4888874 44444443322 2222 234
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee----------cCCccEEEEEecCcccccCCh---
Q 037587 308 QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL----------KSNAGLFCWVDMRHLLVSNTF--- 374 (464)
Q Consensus 308 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~----------~~~~g~f~~~~l~~~~~~~~~--- 374 (464)
..+.++...+.... . .++.++.++++.+++.+.|++.+++.. ....++++.+.+.........
T Consensus 245 ~~~~aa~~al~~~~--~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 320 (392)
T PLN03227 245 FLAKADATATAGEL--A--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDET 320 (392)
T ss_pred HHHHHHHHHHHHHh--c--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhh
Confidence 45555544443211 0 234566677788888888876443311 112244666777432111000
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCC-----CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 375 EAEKELWKKIIFEVGLNISPGSS-----CHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~-----f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
....+++..++ ++||.+.+... +....+..+|++++. .++|++++++++|++++++.
T Consensus 321 ~~~~~~~~~~~-~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 321 LILDQIAHHSL-SEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred hHHHHHHHHHH-HCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 01124666654 67999975321 111225679999987 89999999999999998765
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=197.03 Aligned_cols=218 Identities=18% Similarity=0.186 Sum_probs=156.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhccc---C
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKW---R 153 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~---~ 153 (464)
..+|+.+. ..+|++++|++.+ .+++++|+|+++++..++.+++++||.|+++.|+|++....+.. .
T Consensus 45 Y~R~~~p~-~~~le~~lA~l~g----------~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~ 113 (382)
T TIGR02080 45 YSRSGNPT-RDLLQQALAELEG----------GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK 113 (382)
T ss_pred ccCCCCch-HHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 45676543 5889999999874 35799999999999999999999999999999999865543322 2
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
.|+++..++. .|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..
T Consensus 114 ~~~~v~~~d~-------~d~~~l~~ai~~------~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 114 GCFRVLFVDQ-------GDEQALRAALAQ------KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred cCeEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 1455554431 368888888764 7899999999999999987 55677888899999999999975
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhccc--CCCChHHH
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQ 310 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q 310 (464)
..+. . ++ .+ +..++++|+||.++ .+|++.|++++.++.+.+.+...... ..++++.+
T Consensus 178 ~~~~-~-----pl-~~-------------gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a 237 (382)
T TIGR02080 178 PALQ-N-----PL-AL-------------GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDS 237 (382)
T ss_pred cccC-C-----ch-hh-------------CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHH
Confidence 3221 1 11 11 23478899999985 57899999988666666655544333 23556655
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
..+..-++ .+..+.++..++...+.+.|+.+
T Consensus 238 ~l~lr~l~-------tl~~R~~~~~~na~~~a~~L~~~ 268 (382)
T TIGR02080 238 YLTLRGLR-------TLVARMRLQQRNAQAIVEYLQTQ 268 (382)
T ss_pred HHHHcccc-------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 55433333 23344555667777788888876
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-21 Score=195.53 Aligned_cols=359 Identities=12% Similarity=0.065 Sum_probs=213.4
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.....+||+..+ ...+ ..+.+.+++.+..+. .. ..+....+.+ ....+|+++....+
T Consensus 34 ~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~----------~~--~~~~~~~~~~-~~~~la~~l~~~~~-- 98 (425)
T PRK08088 34 RVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK----------LS--HTCFQVLAYE-PYLELCEKMNQKVP-- 98 (425)
T ss_pred EEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhh----------CC--CccccccCCH-HHHHHHHHHHHhCC--
Confidence 4444556678898764 2223 346666666654221 01 1111112223 34578887765433
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCCCChhhhcccCCCc---------------EEEEEecCCC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFC---LADPGDAFLLPTPYYPGFDRDLKWRPGV---------------EIVPIHCSSS 166 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~~~~g~---------------~~~~v~~~~~ 166 (464)
.+.. +.+++++++++++..+++. +.++ ..|+...++|++....+....+. ...++|.+.
T Consensus 99 ~~~~-~~~~f~~sGsea~e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~- 175 (425)
T PRK08088 99 GDFA-KKTLLVTTGSEAVENAVKIARAATKR-SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPL- 175 (425)
T ss_pred CCCC-CEEEEeCCcHHHHHHHHHHHHHHhCC-CeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccc-
Confidence 1111 3566666666766665554 3333 45666699998876443322110 111122111
Q ss_pred CCccc--CHHHHHHHHHHHhhcCCceEEEEEeCC--CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 167 NGFRI--TISALENAYQQAQTLNLKVKGVLITNP--SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 167 ~~~~~--d~~~l~~~i~~~~~~~~~~~~vil~~P--~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.+... +++.+++.+.+. ....++.+|++ .| +++++...+.+.+++|.++|+++|+++|+||+|.++.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~l~~~-~~~~~~aavi~-Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~--- 250 (425)
T PRK08088 176 HGVSEDDAIASIERIFKND-AAPEDIAAIII-EPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT--- 250 (425)
T ss_pred cCccHHHHHHHHHHHHHhc-cCCCceEEEEE-CcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc---
Confidence 11111 144566666421 11235665554 45 78877888999999999999999999999999997433222
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~ 320 (464)
..++. . .+.+..+.||||.++ +|+|+||++++.+ +.+.+.... ..+..+++.|.++..+++..
T Consensus 251 ~~~~~-~------------~~~~pdi~s~sK~l~-~G~rig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~ 315 (425)
T PRK08088 251 LFAME-Q------------MGVAADLTTFAKSIA-GGFPLAGVTGRAE-VMDAIAPGGLGGTYAGNPIACAAALAVLKVF 315 (425)
T ss_pred hhHHh-h------------cCCCCCEEEEecccc-CCCcceeeEecHH-HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 11111 1 123344789999998 9999999999544 444443222 22346789999999998865
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEEeCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIR-CLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNISPGSS 397 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v~pg~~ 397 (464)
.. ++++++.++..+.+++.+.+.+.+.+.. ...+. |+++|+.+...... +......+++..++ ++||.+.|+..
T Consensus 316 ~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~-~~Gv~~~~~~~ 392 (425)
T PRK08088 316 EQ-ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARAR-DKGLILLSCGP 392 (425)
T ss_pred Hh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHH-hCCCEEecCCC
Confidence 44 4556666666555555555554555431 12222 78999999532211 11122345666665 67999988655
Q ss_pred CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 398 CHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 398 f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
| .+.+|++++. .+++++++++++|++++++.
T Consensus 393 ~----~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 393 Y----YNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred C----CCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4 3679999985 78999999999999998764
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=190.17 Aligned_cols=339 Identities=12% Similarity=0.096 Sum_probs=192.6
Q ss_pred CCCCCceEEeeccccccc---HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 32 LHNPSGIIQMGLAENQLS---FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 32 ~~~~~~~i~l~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
+.+...+|||+.+ +.+. .|.+.+++.+..... .. .........+. .....++++.|+++++ .
T Consensus 42 d~~g~~~ld~~s~-~~lgl~~~p~v~~A~~~~l~~~--g~--~~~~~~~~~~~-~~~~~~l~~~la~~~~--------~- 106 (402)
T PRK07505 42 LADGHTFVNFVSC-SYLGLDTHPAIIEGAVDALKRT--GS--LHLSSSRTRVR-SQILKDLEEALSELFG--------A- 106 (402)
T ss_pred ecCCceEEEeecC-CccCCCCCHHHHHHHHHHHHHh--CC--CCCCccchhhh-hHHHHHHHHHHHHHhC--------C-
Confidence 3345668999875 3443 566777766643210 00 00000000011 1123455666665543 2
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----CCCC-eEEEcCCCCCChhh---hcccCCCcEEEEEecCCCCCcccCHHHHHHHH
Q 037587 109 PNKLVLTAGSTAANETLMFCLA----DPGD-AFLLPTPYYPGFDR---DLKWRPGVEIVPIHCSSSNGFRITISALENAY 180 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~----~~gd-~Vlv~~p~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 180 (464)
..+++++++++...++..+. .+|+ .|++.+..|++... ..... +.+++.+|. .|++.+++.+
T Consensus 107 --~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~-~~~v~~~~~-------~d~~~l~~~~ 176 (402)
T PRK07505 107 --SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICAD-ETEVETIDH-------NDLDALEDIC 176 (402)
T ss_pred --CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhc-CCeEEEeCC-------CCHHHHHHHH
Confidence 34544455667776665432 2232 36666666543321 11222 456666664 3788898877
Q ss_pred HHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCC
Q 037587 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260 (464)
Q Consensus 181 ~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (464)
.+ +.+++++++|+||||.+++ +++|.++|+++++++|+||+|+...|+..... .. ...... .
T Consensus 177 ~~------~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~-~~-~~~~~~-------~ 238 (402)
T PRK07505 177 KT------NKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEG-YV-RSELDY-------R 238 (402)
T ss_pred hc------CCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCc-hH-HHHcCC-------C
Confidence 54 5678999999999999988 56677888899999999999964444432111 11 111110 0
Q ss_pred CCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC----CCChHHHHHHHHHcC--CchhhHHHHHHHHHHH
Q 037587 261 LWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG----LVSSQTQYLLSRMLS--DKKFTCNYMKENRKRL 334 (464)
Q Consensus 261 ~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~----~~s~~~q~~~~~~l~--~~~~~~~~~~~~~~~~ 334 (464)
.++++++++||||+||.+| ||++++++.+.+.+......+ ++++++..++.+.++ ..+. +.+.++.+
T Consensus 239 ~~d~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~----~~~~~~~l 311 (402)
T PRK07505 239 LNERTIIAASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEE----LDQLQQKL 311 (402)
T ss_pred CCCCeEEEEechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccC----cHHHHHHH
Confidence 2477899999999999776 888765666666665543332 234456666655554 2222 33344445
Q ss_pred HHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEeec-
Q 037587 335 RKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFAN- 412 (464)
Q Consensus 335 ~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~- 412 (464)
+++.+.+...+.. .+ ...+-++.++.++.. ....++...|+ ++||.|+++..+.. .+.+++||+++.
T Consensus 312 ~~~~~~~~~~~~~---~~-~g~~~~i~~~~~~~~------~~~~~~~~~l~-~~Gi~v~~~~~p~~~~~~~~lRi~~~~~ 380 (402)
T PRK07505 312 QNNIALFDSLIPT---EQ-SGSFLPIRLIYIGDE------DTAIKAAKQLL-DRGFYTSPVFFPVVAKGRAGLRIMFRAS 380 (402)
T ss_pred HHHHHHHHHHHHh---cC-CCCCCCEEEEEeCCH------HHHHHHHHHHH-HCCCeEeeecCCCCCCCCceEEEecCcc
Confidence 5554443332211 11 111212223333210 12235677776 67999998743321 123689999986
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 037587 413 ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 413 ~~~e~l~~~l~~l~~~l~~ 431 (464)
.+++++++++++|++++++
T Consensus 381 ~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 381 HTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 6899999999999998865
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=194.08 Aligned_cols=290 Identities=15% Similarity=0.157 Sum_probs=188.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccC---
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR--- 153 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~--- 153 (464)
..+|+++. ..+|++.+|++++ ..+.+++ ++++.++..++.+++++||.|+++.|.|+.....+...
T Consensus 55 y~r~~~pt-~~~Le~~lA~l~G---------~~~al~~-~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~ 123 (386)
T PRK06767 55 YSRLGNPT-VKLFEERMAVLEG---------GEEALAF-GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEK 123 (386)
T ss_pred ccCCCCcc-hHHHHHHHHHHhC---------CCcEEEE-CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhh
Confidence 45566543 5889999999986 2344555 45567899999999999999999999887665543221
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
.|+++..++. .|++.+++++.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.
T Consensus 124 ~gi~~~~~~~-------~d~~~l~~~i~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~ 187 (386)
T PRK06767 124 FMITHSFCDM-------ETEADIENKIRP------NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCS 187 (386)
T ss_pred cCeEEEEeCC-------CCHHHHHHhhCc------CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 2555554432 367888888754 7899999999999999987 56777788899999999999974
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHhcc-c-CCCChHHH
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKMSS-F-GLVSSQTQ 310 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~~~-~-~~~s~~~q 310 (464)
..+. . + + ..+..+++.|+||.++.+|.|+ ||++++++.+.+..+.... . ..++++.+
T Consensus 188 ~~~~-~-----p---l-----------~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a 247 (386)
T PRK06767 188 PYLQ-R-----P---L-----------ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDA 247 (386)
T ss_pred cccC-C-----c---h-----------hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHH
Confidence 2221 1 1 1 0133477889999998788885 8999866655544333222 2 23455555
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eec-----------CCccEEEEEecCcccccCChhHH
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR-CLK-----------SNAGLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~-----------~~~g~f~~~~l~~~~~~~~~~~~ 377 (464)
.++...++. +..+.++..++...+.+.|+++ ++. +.- ..+| .+.+++... ....
T Consensus 248 ~l~~~~L~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg-~vsf~l~~~-----~~~~ 314 (386)
T PRK06767 248 WLLLRGLKT-------LAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGG-VISFSIKGG-----KEET 314 (386)
T ss_pred HHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCc-eEEEEEcCC-----HHHH
Confidence 554444432 3344556677888889999887 664 331 2344 555666521 1223
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 378 KELWKKIIFEVGLNISPGSSCHC---------------------NEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~---------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.+++..+ +..++.+.-|..... -.++.+|+|++. |+.+.+++-|.+++.
T Consensus 315 ~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~ 384 (386)
T PRK06767 315 QAFINDL-HFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALK 384 (386)
T ss_pred HHHHHhC-CccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 3455554 455666654433221 014689999995 446666666666664
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=193.28 Aligned_cols=333 Identities=11% Similarity=0.105 Sum_probs=216.2
Q ss_pred CCCCCCCCCceEEeecccc--ccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 28 PYDQLHNPSGIIQMGLAEN--QLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~n--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
.|..+.....+||+..+.. .++ .|.+.+++.+.. .....++. ....++++.+++.+..
T Consensus 21 ~~l~d~dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~-------------~~~~~~~~-~~~~~~~~~la~~l~~----- 81 (375)
T PRK04260 21 NYLIDTDGKKYLDFSSGIGVTNLGFHPQVQQALQKQA-------------GLIWHSPN-LYLNSLQEEVAQKLIG----- 81 (375)
T ss_pred CEEEeCCCCEEEECCCCcccccCCCCHHHHHHHHHHH-------------HhcCcccC-ccCCHHHHHHHHHHhc-----
Confidence 3444445667899976522 222 344666665542 12222322 2347888999988741
Q ss_pred CCCCCC-cEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChh-hhcccCCCcEE---------EEEecCCCCCccc
Q 037587 105 VKFDPN-KLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFD-RDLKWRPGVEI---------VPIHCSSSNGFRI 171 (464)
Q Consensus 105 ~~~~~~-~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~-~~~~~~~g~~~---------~~v~~~~~~~~~~ 171 (464)
.++ .+++++++++++..+++... .++++|++.+.+|++.. ..+... |.+. ..++.. . ..
T Consensus 82 ---~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-~~ 153 (375)
T PRK04260 82 ---DKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSAT-GQDKIKDGFGDGVPHFSYA---I-FN 153 (375)
T ss_pred ---CcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhcc-CCcccCCCCCCCCCCeEEe---C-CC
Confidence 233 46889999999998887752 34678999888887643 222111 2111 111110 0 13
Q ss_pred CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhh
Q 037587 172 TISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAV 250 (464)
Q Consensus 172 d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~ 250 (464)
|++.+++.+.+ ++.+|++..++|++|... +.+.++++.++|+++|+++|+||+|.++...+. .... ...
T Consensus 154 dl~~l~~~l~~------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~---~~~~-~~~ 223 (375)
T PRK04260 154 DLNSVKALVNK------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK---LYAF-EHY 223 (375)
T ss_pred CHHHHHHhcCC------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhh-Hhh
Confidence 78888887643 677888888899999875 457799999999999999999999986422221 1111 111
Q ss_pred hccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHHcCCchhhHHHHH
Q 037587 251 MDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRMLSDKKFTCNYMK 328 (464)
Q Consensus 251 ~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~ 328 (464)
.. . +. +.||||.++ +|+|+||++++++ +.+.+.. ....+..+++.+.++.++++.... .++.+
T Consensus 224 -~~-------~-pd---i~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~ 288 (375)
T PRK04260 224 -GI-------E-PD---IFTLAKGLA-NGVPVGAMLAKSS-LGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLE 288 (375)
T ss_pred -CC-------C-CC---EEEeccccc-CCcceEEEEEcHH-HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHH
Confidence 11 1 22 349999998 8999999999644 4444432 122234578889988888865443 45567
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 037587 329 ENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFR 407 (464)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 407 (464)
+.++..+..++.+.+.+.+++ +...+ ..|+++|++++.. ..++...+. ++||.+.|+ +.+.+|
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~--------~~~~~~~l~-~~Gi~v~~~------~~~~lR 352 (375)
T PRK04260 289 QALENGNYLQEQLQKALQDKETVTTVR-GLGYMIGIETTAD--------LSQLVEAAR-DKGLIVLTA------GTNVIR 352 (375)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEEe-ccceEEEEEecCc--------HHHHHHHHH-hCCCEEecC------CCCEEE
Confidence 777777788888888777764 23333 3678999998421 124666654 679999875 246799
Q ss_pred EEeec-CCHHHHHHHHHHHHHH
Q 037587 408 ICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 408 is~~~-~~~e~l~~~l~~l~~~ 428 (464)
+++.. ++++++++++++|+++
T Consensus 353 ~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 353 LLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred EcCCCccCHHHHHHHHHHHHHh
Confidence 99954 8999999999999875
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=193.31 Aligned_cols=287 Identities=13% Similarity=0.160 Sum_probs=187.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC---------------eEEEcCCCCCChh--
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGD---------------AFLLPTPYYPGFD-- 147 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd---------------~Vlv~~p~y~~~~-- 147 (464)
+..++++++++++.+.+| .+++++|+|+++++.+++.+++++|| .|+++.|.|..|.
T Consensus 42 ~~~~~~~~~~~~~a~~~g------~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~ 115 (363)
T TIGR01437 42 EIKELVNKTGEYIANLLG------VEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAP 115 (363)
T ss_pred CHHHHHHHHHHHHHHhhC------CCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCc
Confidence 457888888888887655 34789999999999999999999998 9999998887652
Q ss_pred --hhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE-EeCCCCCCCCCCCHHHHHHHHHHHhhCCeE
Q 037587 148 --RDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL-ITNPSNPLGTAMTHQELNHLINFSKSKRIH 224 (464)
Q Consensus 148 --~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi-l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~ 224 (464)
..+... |++++.++.+ +.+|++++++++.+ ++++++ +++|+||+|.+.+ +++|.++|+++|++
T Consensus 116 ~~~~~~~~-g~~~v~v~~~----~~~d~~~le~ai~~------~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~ 181 (363)
T TIGR01437 116 VETMVRLG-GGKVVEAGYA----NECSAEQLEAAITE------KTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLP 181 (363)
T ss_pred hHHHHHhc-CCeEEEEcCC----CCCCHHHHHHhcCh------hceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCe
Confidence 344445 9999888753 45899999999875 777765 5788999999887 45688899999999
Q ss_pred EEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--
Q 037587 225 IVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF-- 302 (464)
Q Consensus 225 lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~-- 302 (464)
+|+|++|.. . ......+ +..+++.|++|.+ .|++.|+++++++.+ +..+.....
T Consensus 182 vivD~a~~~---~-----~~~~~~~-------------g~D~~~~S~~K~l--~gp~~G~l~~~~~~i-~~~~~~~~~~~ 237 (363)
T TIGR01437 182 LIVDAAAEE---D-----LQKYYRL-------------GADLVIYSGAKAI--EGPTSGLVLGKKKYI-EWVKLQSKGIG 237 (363)
T ss_pred EEEECCCCC---c-----hHHHHHc-------------CCCEEEEeCCccc--CCCceEEEEEcHHHH-HHHHhccCCCc
Confidence 999999971 1 1111111 2346778999976 677899999854433 333222111
Q ss_pred -----CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC--CccE-E--EEEecCccccc
Q 037587 303 -----GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS--NAGL-F--CWVDMRHLLVS 371 (464)
Q Consensus 303 -----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~-f--~~~~l~~~~~~ 371 (464)
+..+..++.++...+... ..+..+.+.++++.+.+.|.+. |+.+... ..+. + .-+.+... .
T Consensus 238 ~~~~~~~~~~~gl~aAl~~~~~~------~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~--~ 309 (363)
T TIGR01437 238 RAMKVGKENILGLTAALEQYLST------GKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDES--E 309 (363)
T ss_pred ceeccCHHHHHHHHHHHHHHHcc------CcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEecc--C
Confidence 111112333333222221 1122333344566788889887 8877632 1111 0 11222210 0
Q ss_pred CChhHHHHHHHHHHHhcC--eEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 372 NTFEAEKELWKKIIFEVG--LNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 372 ~~~~~~~~l~~~ll~~~g--I~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
... ...++.+.| +++| |.+++ .| ...+.+|+++...+++|++.++++|++++
T Consensus 310 ~g~-~~~~l~~~L-~~~~~~I~~r~--~~--~~~~~~~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 310 LGM-TAADVVQAL-RQGEPAIYTRG--YK--ANEGIIEIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred CCC-CHHHHHHHH-hcCCCCEEEee--ee--ecCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence 011 122455555 5566 66665 22 24678999998888999999999998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-22 Score=195.01 Aligned_cols=211 Identities=18% Similarity=0.166 Sum_probs=145.4
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC----hhhhcccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG----FDRDLKWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~~g~~~~~ 160 (464)
...+|++++|++.+ .+ ..+++ +++++++..++.+++++||+|+++.|.|++ +...++.. |+++..
T Consensus 46 ~~~~L~~~lA~l~g--------~~-~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~-G~~v~~ 114 (376)
T PRK06460 46 TVLELTKKIVELEN--------AE-MGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNW-GVNVDA 114 (376)
T ss_pred cHHHHHHHHHHHhC--------CC-cEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhh-CcEEEE
Confidence 56899999999986 32 34555 444689999999999999999999876643 34455555 999888
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+ +.+.+++.+. +++++|++++|+||||.+++.+ +|+++|+++|+++|+||+|+.. +..
T Consensus 115 ~~~~-------~~~~l~~~~~------~~tklV~l~sp~NPtG~v~d~~---~I~~la~~~g~~vivDea~~~~-~~~-- 175 (376)
T PRK06460 115 SNPG-------SDNIIEKAKS------KRYDVVFVENITNPLLRVVDIT---ELSKVCKENGSILIVDATFSTP-INQ-- 175 (376)
T ss_pred ECCC-------CHHHHHHhcC------CCceEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCcCcc-ccC--
Confidence 7753 1223333222 3789999999999999999865 5777888999999999999742 111
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCC
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSD 319 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~ 319 (464)
.+ + ..+.+++++|+||.++ ..+.|+||++++ +.+.+.+++....+..+.. ...+..+++.
T Consensus 176 ---~~---l-----------~~~~divv~S~sK~l~G~~~~~~G~~~~~-~~l~~~l~~~~~~~g~~~~-~~~a~~~l~~ 236 (376)
T PRK06460 176 ---KP---L-----------ELGADIVVHSASKFLAGHNDVIAGLAAGY-GKLLNVIDQMRRTLGTSLD-PHAAYLTLRG 236 (376)
T ss_pred ---Ch---h-----------hcCCCEEEeecceeccCCCCceEEEEecC-HHHHHHHHHHHHhcCCCCC-HHHHHHHHhc
Confidence 11 1 1145688999999985 234789999985 4455555544433333221 1233344444
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.+ +++.+++.+.+++..+.+.|+++
T Consensus 237 ~~----~l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 237 IK----TLKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred hh----hHHHHHHHHHHHHHHHHHHHHcC
Confidence 33 46677778888999999999876
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-24 Score=180.78 Aligned_cols=145 Identities=57% Similarity=1.042 Sum_probs=125.7
Q ss_pred CcccccccccCCCCCccchhhhhhhcCCCCCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcc-ccccccccc
Q 037587 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNG-ESLFRELAL 79 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (464)
+||+++.++.|.+++.||..|+.+..++|++..||.|+|+|+++||.+..+.+..++.+.++....++.+ ...+.++..
T Consensus 8 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~a~ 87 (153)
T PLN02994 8 LLSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDIAL 87 (153)
T ss_pred hhhhhcccccCCCCchHHHHHHHHhcCCCCcccCCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999999998854322222111 111233466
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG 145 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~ 145 (464)
|+++.|.++||+++|+|++++++..+++++++|++|+|+++++..+++++++|||.|++++|+|++
T Consensus 88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 88 FQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 999999999999999999998886667889999999999999999999999999999999999973
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=191.33 Aligned_cols=218 Identities=18% Similarity=0.209 Sum_probs=159.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcc---cC
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLK---WR 153 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~---~~ 153 (464)
..+|+++. ...|++++|++.+ .+.+++++|+++++..++.+++++||+|++++|+|++....+. ..
T Consensus 46 Y~R~~~pt-~~~L~~~lA~l~g----------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 114 (386)
T PRK08045 46 YSRRGNPT-RDVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR 114 (386)
T ss_pred eeCCCCcc-HHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 56677653 5889999999875 2369999999999999999999999999999999986443322 12
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
.|+++..++ ..|++.+++.+.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..
T Consensus 115 ~gi~v~~vd-------~~d~e~l~~~l~~------~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 115 GCYRVLFVD-------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred CCeEEEEeC-------CCCHHHHHHhccc------CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCc
Confidence 245665553 1478888888754 7899999999999999987 55677778899999999999975
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhccc--CCCChHHH
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQ 310 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q 310 (464)
... .. ++ .+ ...++++|++|.++ .++++.|++++.++.+.+.+...... ...+++.+
T Consensus 179 ~~~-~~-----pl-~~-------------gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~ 238 (386)
T PRK08045 179 PAL-QN-----PL-AL-------------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDS 238 (386)
T ss_pred ccc-CC-----ch-hh-------------CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHH
Confidence 322 11 11 11 22378999999984 66788999988656555544432222 24677888
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.++...|+. +..++++..++...+.+.|+.+
T Consensus 239 ~l~~rgl~t-------l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 239 YLLLRGLRT-------LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred HHHHhhhcc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 877777765 4555666677778888888876
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=185.45 Aligned_cols=299 Identities=17% Similarity=0.147 Sum_probs=207.3
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEe
Q 037587 83 YHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 83 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~ 162 (464)
..-+.+|.+.||+|++ .+..++.+++-.++..++.+|++++|.|+...-.|.+....++.. +++++.+.
T Consensus 83 ~~~h~~LE~~lA~f~g----------~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls-~a~~~~f~ 151 (388)
T COG0156 83 SDLHVELEEELADFLG----------AEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLS-RAEVRRFK 151 (388)
T ss_pred cHHHHHHHHHHHHHhC----------CCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhC-CCcEEEec
Confidence 3345789999999986 334555566666777888999999999999999999998888876 88888876
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
- .|++.|++.+++....+.+.++|++...-...|.+.| +++|++++++|+.++++||+|+-..+++.+
T Consensus 152 H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~G-- 219 (388)
T COG0156 152 H-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNG-- 219 (388)
T ss_pred C-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCC--
Confidence 2 4789999999875433223555666666778898855 777888999999999999999977776542
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-hcccCC---CChHHHHHHHHHcC
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-MSSFGL---VSSQTQYLLSRMLS 318 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-~~~~~~---~s~~~q~~~~~~l~ 318 (464)
..+.+... + ...+..|+++||||+||..| ||+.++ ..+.+.+.. .+++.. .++...+++...++
T Consensus 220 -rG~~e~~g-~------~~~~vdi~~gTlsKAlGs~G---g~v~g~-~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~ 287 (388)
T COG0156 220 -RGLAEHFG-L------EPEEVDIIVGTLGKALGSSG---GYIAGS-AALIDYLRNRARPFIFSTALPPAVAAAALAALR 287 (388)
T ss_pred -ccHHHHhC-C------CCccceEEEEEchhhhcccC---ceeeCc-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHHH
Confidence 22222221 1 02356899999999999888 999985 445555544 344431 23333333334443
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
.. +...+.++.++++...+.+.+...|+.+.++.+. ++.+-+... ....++...++++ ||.+.+....
T Consensus 288 ~l----~~~~~~r~~L~~~~~~~~~~~~~~~~~~~~s~s~-I~pv~~gd~------~~a~~~s~~l~~~-Gi~v~~i~~P 355 (388)
T COG0156 288 IL----EEGPERRERLQELAAFFRSLLKALGLVLLPSESP-IIPVILGDE------ERALEASRALLEE-GIYVSAIRPP 355 (388)
T ss_pred HH----HhCHHHHHHHHHHHHHHHHHHHhcCCccCCCCCC-eeeeEeCCH------HHHHHHHHHHHHC-CeeEeeecCC
Confidence 21 2234567777778778887777778877666664 665555532 2234566777765 9999866544
Q ss_pred CC-CCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 399 HC-NEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 399 ~~-~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
.- .+...+|++++. .++++++.+++.|.++
T Consensus 356 TVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 356 TVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 32 334679999987 8999999999998764
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=190.80 Aligned_cols=345 Identities=13% Similarity=0.093 Sum_probs=213.2
Q ss_pred CCCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+. .|.+.+++.++.. ....+... ...+....+++.+.+..
T Consensus 31 ~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~-------------~~~~~~~~-~~~~~~~~la~~l~~~~-- 94 (406)
T PRK12381 31 SRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQAS-------------KFWHTGNG-YTNEPVLRLAKKLIDAT-- 94 (406)
T ss_pred CEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHh-------------hcccccCc-cCCHHHHHHHHHHHhhC--
Confidence 35555566778998763 33443 4666666665421 11111111 11333344555554321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCCCChhhhcccCCCcEEEE---EecCC--CCCcc
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA--------DPGDAFLLPTPYYPGFDRDLKWRPGVEIVP---IHCSS--SNGFR 170 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~---v~~~~--~~~~~ 170 (464)
..+.+++++++++++..+++... .+...|+..+.+|++....+....+..... .++.+ ..-..
T Consensus 95 ----~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (406)
T PRK12381 95 ----FADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY 170 (406)
T ss_pred ----CCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC
Confidence 24689999999999999998742 134689999999988754332221211100 00000 00011
Q ss_pred cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhh
Q 037587 171 ITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM--THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248 (464)
Q Consensus 171 ~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~--s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~ 248 (464)
.|++.+++.+.+ ++++|++ +|.||+|-++ +.+.+++|.++|++||+++|+||+|.++.+.+. . ... .
T Consensus 171 ~d~~~l~~~l~~------~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~--~-~~~-~ 239 (406)
T PRK12381 171 NDLNSASALIDD------QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE--L-YAY-M 239 (406)
T ss_pred CCHHHHHHhccC------CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc--h-hhh-H
Confidence 367888887753 6766666 7999998765 689999999999999999999999977533332 1 111 1
Q ss_pred hhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHH
Q 037587 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNY 326 (464)
Q Consensus 249 l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~ 326 (464)
.. +. . +. +.||||.+| +|+|+||++++ +.+.+.+.... ..+..+++.+.++.+.|+.- .
T Consensus 240 ~~-~v-------~-pD---i~t~sK~l~-gG~~ig~~~~~-~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~-- 300 (406)
T PRK12381 240 HY-GV-------T-PD---VLTTAKALG-GGFPIGAMLTT-EKCASVMTVGTHGTTYGGNPLASAVAGKVLELI---N-- 300 (406)
T ss_pred hh-CC-------C-CC---EEEehhhhh-CCCceEEEEEc-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--
Confidence 11 11 1 12 359999998 99999999995 44555443321 22345778888877765421 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC--Ce--eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 037587 327 MKENRKRLRKRKEMLVSGLKVAG--IR--CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNE 402 (464)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~~g--~~--~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~ 402 (464)
....++.++++.+++.+.|++++ .. ......|+++++.++.... .....+...+ .++||.+.++ +
T Consensus 301 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~----~~~~~~~~~l-~~~Gv~v~~~------g 369 (406)
T PRK12381 301 TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQISQEA-AKAGVMVLIA------G 369 (406)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchh----hHHHHHHHHH-HHCCcEEeeC------C
Confidence 12345666667777777777653 22 1223457888998864210 1122355544 5789999754 2
Q ss_pred CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 403 PGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 403 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++++|++++. ++++++++++++|++++++..
T Consensus 370 ~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~ 401 (406)
T PRK12381 370 PNVVRFAPALNISEEEITTGLDRFARACERFV 401 (406)
T ss_pred CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 4589999976 799999999999999997654
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-21 Score=187.48 Aligned_cols=280 Identities=14% Similarity=0.133 Sum_probs=182.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----cc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~ 152 (464)
..+|+.+ ...+|++++|++. ..+ .++++++++++..++.+++++||+|+++.|+|+.+...+ ..
T Consensus 45 y~ry~~p-~~~~Le~~lA~l~----------~~~-~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~ 112 (366)
T PRK07582 45 YGRASNP-TWRALEAALGELE----------GAE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP 112 (366)
T ss_pred eECCCCc-cHHHHHHHHHHHc----------CCC-EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc
Confidence 5667654 5699999999985 134 445555567999999999999999999999998876543 33
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |++++.++.+.. + + .+. +++++|++++|+||||.+. ++++|+++|+++|+++|+|++|.
T Consensus 113 ~-G~~v~~v~~~~~--~----~----~~~------~~t~lV~le~p~NPtg~v~---di~~I~~~a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 113 L-GVTVREAPTAGM--A----E----AAL------AGADLVLAETPSNPGLDVC---DLAALAAAAHAAGALLVVDNTTA 172 (366)
T ss_pred C-eEEEEEECCCCh--H----H----Hhc------cCceEEEEECCCCCCCCcc---CHHHHHHHHHHcCCEEEEECCCC
Confidence 4 999999886421 1 1 111 2788999999999999875 57888999999999999999996
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHHHHhccc--CCCChHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQT 309 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~ 309 (464)
.. +... ++ .+ +..++++|+||.+ |.+|+|+||++++++.+.+.+.....+ ...+++.
T Consensus 173 ~~-~~~~-----p~-~~-------------g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~ 232 (366)
T PRK07582 173 TP-LGQR-----PL-EL-------------GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFE 232 (366)
T ss_pred Cc-cccC-----ch-hc-------------CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHH
Confidence 31 2211 11 12 2337889999998 456899999998666666655544333 2345666
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eee----c--C-----------CccEEEEEecCcccc
Q 037587 310 QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI-RCL----K--S-----------NAGLFCWVDMRHLLV 370 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~----~--~-----------~~g~f~~~~l~~~~~ 370 (464)
...+...++.. ..+.++..++...+.+.|+++ .+ .|. + | .+| .+.+++..
T Consensus 233 a~l~~r~l~tl-------~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg-~~s~~~~~--- 301 (366)
T PRK07582 233 AWLAHRSLGTL-------GLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGG-LVSFELAD--- 301 (366)
T ss_pred HHHHHhccccH-------HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcc-eEEEEeCC---
Confidence 66666666542 233345556777788888876 33 222 1 1 345 55566641
Q ss_pred cCChhHHHHHHHHHHHhcCeEEeCCCCCCC--------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 371 SNTFEAEKELWKKIIFEVGLNISPGSSCHC--------------NEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 371 ~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~--------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
. +.+.++++..++... +.++|. ..++.+|+|++. |+.+.+++.|.++++
T Consensus 302 ~-------~~~~~~~~~l~~~~~-~~s~G~~~sl~~~~~~~~~~~~~~liR~svGl---E~~~dli~dl~~al~ 364 (366)
T PRK07582 302 A-------AAAERFVAASRLVVA-ATSFGGVHTSADRRARWGDAVPEGFVRLSCGI---EDTDDLVADLERALD 364 (366)
T ss_pred H-------HHHHHHHHhCCccee-cccCCCccchhhhHHHcCCCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 0 123455566665542 222221 124679999996 334555555555554
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=188.90 Aligned_cols=216 Identities=17% Similarity=0.172 Sum_probs=152.4
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC----hhhhcccC
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG----FDRDLKWR 153 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~ 153 (464)
.+|+++. ...|++.+|++.+ .++++++++ +++++.+++.+++++||.|+++.|+|+. +...+...
T Consensus 55 ~R~~~p~-~~~Le~~lA~l~g---------~~~~v~~~s-G~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~ 123 (405)
T PRK08776 55 TRSGNPT-RDLLGEALAELEG---------GAGGVITAT-GMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKG 123 (405)
T ss_pred cCCCChH-HHHHHHHHHHHhC---------CCceEEEcC-HHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhc
Confidence 3444332 3677777877764 245555555 5799999999999999999999999987 33334444
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
|.+++.++. .|++.+++.+++ ++++|++++|+||||.+. ++++|+++|+++|+++|+|++|..
T Consensus 124 -g~~v~~v~~-------~d~~~l~~~i~~------~tklV~l~~P~NPtG~v~---dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 124 -HFALITADL-------TDPRSLADALAQ------SPKLVLIETPSNPLLRIT---DLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred -CcEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCccC---CHHHHHHHHHHcCCEEEEECCCcc
Confidence 888888764 267888887754 789999999999999985 578889999999999999999974
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC-ccEEEEEEecCHHHHHHHHHhccc--CCCChHHH
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP-GFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQ 310 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~-GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q 310 (464)
... . .++ .+ +..+++.|++|.++.+ ++..|+++++++.+.+.+...... ...+++.+
T Consensus 187 ~~~--~----~pl-~~-------------gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a 246 (405)
T PRK08776 187 PAL--Q----KPL-EF-------------GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDA 246 (405)
T ss_pred ccc--C----Ccc-cc-------------cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 211 1 111 12 2337889999999644 588999988666665544433222 23566666
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.++...++ +++.+.+...+....+.+.|+++
T Consensus 247 ~l~~~gl~-------tl~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 247 FLTLRGLR-------TLDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred HHHHhhhC-------cHHHHHHHHHHHHHHHHHHHHcC
Confidence 66554333 35566677777888888888876
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-21 Score=188.80 Aligned_cols=209 Identities=16% Similarity=0.191 Sum_probs=149.2
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~~g~~~~~v 161 (464)
..+|++.+|++++ .+++++++|+++++..++.+++++||.|+++.+.|++... .+... |++++.+
T Consensus 63 ~~~le~~la~l~g----------~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~-G~~v~~v 131 (390)
T PRK08133 63 VTMFQERLAALEG----------AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF-GIETTFV 131 (390)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHc-CcEEEEE
Confidence 4678888888874 3468899999999999999999999999999999976544 33445 9999988
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++++++.+++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+. .
T Consensus 132 d~~-------d~~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~-~-- 192 (390)
T PRK08133 132 DLT-------DLDAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQ-Q-- 192 (390)
T ss_pred CCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccC-C--
Confidence 753 67888887754 7899999999999999975 678888899999999999998643221 1
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHhcccC-CCChHHHHHHHHHcCC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKMSSFG-LVSSQTQYLLSRMLSD 319 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~ 319 (464)
+ ..+ +..+++.|+||.++.+|.++ ||++++++.+.+......... .+++..+.+ +++.
T Consensus 193 ---p-l~~-------------g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~---~l~g 252 (390)
T PRK08133 193 ---P-LKL-------------GADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWV---FLKG 252 (390)
T ss_pred ---c-hhh-------------CCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHH---HHcc
Confidence 1 111 33477999999998889998 556665443333332233222 234443333 3333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.+ .+..+.++..++...+.+.|+++
T Consensus 253 l~----tl~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 253 LE----TLSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred cc----hHHHHHHHHHHHHHHHHHHHHhC
Confidence 22 24555556667778888888876
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=190.83 Aligned_cols=217 Identities=15% Similarity=0.250 Sum_probs=150.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----cc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~ 152 (464)
..+|+.+. ..+|++.+|++++ .+. .+++++++.++..++.+++++||.|+++.|.|+.+...+ ..
T Consensus 59 y~r~~~p~-~~~Le~~lA~l~G--------~~~--~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 127 (398)
T PRK07504 59 YSRYSNPT-VDMFEKRMCALEG--------AED--ARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPR 127 (398)
T ss_pred eecCCCch-HHHHHHHHHHHhC--------CCe--eeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhh
Confidence 35565543 5899999999875 333 345667778888888888999999999999998754432 33
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |++++.++ .+|++.+++++.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+
T Consensus 128 ~-G~~v~~vd-------~~d~e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a 190 (398)
T PRK07504 128 Y-GIESTLVD-------GLDLDNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFA 190 (398)
T ss_pred c-CeEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCcc
Confidence 4 88888875 2578999888754 7899999999999999987 6677788889999999999998
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEE-EEEecCHHHHHHHHH-hcccC-CCChHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVG-MIYSNNERVVSAATK-MSSFG-LVSSQT 309 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG-~l~~~~~~~~~~~~~-~~~~~-~~s~~~ 309 (464)
...+. . . ..+ +..+++.|+||.++.+|.|+| +++++++.+.+.++. ....+ .++++.
T Consensus 191 ~~~~~-~-----~-~~~-------------gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~ 250 (398)
T PRK07504 191 TPLFQ-K-----P-LEL-------------GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFN 250 (398)
T ss_pred ccccC-C-----c-hhh-------------CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHH
Confidence 53221 1 1 112 445789999999988999996 556655544433332 12222 244444
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 310 QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
+.++...|+. +..+.++..+....+.+.|+++
T Consensus 251 A~~~l~~L~t-------l~~R~~~~~~na~~la~~L~~~ 282 (398)
T PRK07504 251 AWTLLKGLET-------LPVRVRQQTESAAAIADFLAGH 282 (398)
T ss_pred HHHHHhccch-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 4444444433 3334444456667777778765
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-21 Score=192.05 Aligned_cols=295 Identities=16% Similarity=0.198 Sum_probs=199.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCCCChhhhc---ccCCCcEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA----DPGDAFLLPTPYYPGFDRDL---KWRPGVEI 158 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~~g~~~ 158 (464)
..++|+.++++++ +++++|++|+|+++++.+++.++. ++||.|++..+.|+.+...+ +.. |+++
T Consensus 49 ~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~-g~~v 119 (402)
T TIGR02006 49 VENARNQVAELIG--------ADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLERE-GFEV 119 (402)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhc-CCEE
Confidence 4567788888775 678899999999999999887753 68999999999998755443 334 9999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
+.+++++ ++.+|++.+++.+.+ ++++|++++|+||||.+.+ +++|.++|+++|+++++|++++ ++.
T Consensus 120 ~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a---~g~ 185 (402)
T TIGR02006 120 TYLPPKS--NGLIDLEELKAAIRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQS---VGK 185 (402)
T ss_pred EEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchh---cCC
Confidence 9998763 456899999988754 6889999999999999976 6678888999999999999997 332
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--------cccCCCChHHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--------SSFGLVSSQTQ 310 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--------~~~~~~s~~~q 310 (464)
. + .++. .....+++.|.+|.+|.+| +|+++.+++......... ...++.+....
T Consensus 186 ~--~-~~~~-------------~~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~ 247 (402)
T TIGR02006 186 I--P-INVN-------------ELKVDLMSISGHKIYGPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQI 247 (402)
T ss_pred c--c-cCcc-------------ccCCCEEEEehhhhcCCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHH
Confidence 2 1 1211 1144577889999887556 788887543222110000 01123344444
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC---ccEEEEEecCcccccCChhHHHHHHHHHHH
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSN---AGLFCWVDMRHLLVSNTFEAEKELWKKIIF 386 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~ 386 (464)
.++..+++. +.+.++...+++++.++++.+.|+++ ++.+..+. ....+.+.++. .. ..++...+
T Consensus 248 ~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~-~~------~~~~~~~l-- 315 (402)
T TIGR02006 248 VGMGEAFRI---AKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY-VE------GESLIMAL-- 315 (402)
T ss_pred HHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC-cC------HHHHHHhc--
Confidence 444444432 23345666777888888899988875 55554211 10011122221 11 11233222
Q ss_pred hcCeEEeCCCCCCCC-----------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 387 EVGLNISPGSSCHCN-----------------EPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 387 ~~gI~v~pg~~f~~~-----------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.+|.|+.|..+... ..+++|+|++. .|+++++++++.|++++++.+.
T Consensus 316 -~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 316 -KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred -CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 48999888776531 13789999988 7899999999999999887654
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=192.68 Aligned_cols=293 Identities=17% Similarity=0.224 Sum_probs=194.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCCCChhhhc---ccCCCcEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA----DPGDAFLLPTPYYPGFDRDL---KWRPGVEI 158 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~~g~~~ 158 (464)
..++|+.++++++ +++++|++++|+++++.+++.++. ++||.|+++.++|+.....+ +.. |+++
T Consensus 51 ~~~~r~~ia~~~g--------~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~-g~~~ 121 (404)
T PRK14012 51 VDIARNQIADLIG--------ADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFEV 121 (404)
T ss_pred HHHHHHHHHHHcC--------cCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhC-CCEE
Confidence 4567788888775 677899999999999999887763 78999999999997764433 334 9999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
+.++.++ ++.+|++.+++.+.+ ++++|++++++||||.+++ +++|.++|+++|+++|+|++++ ++.
T Consensus 122 ~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~---~g~ 187 (404)
T PRK14012 122 TYLDPQS--NGIIDLEKLEAAMRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQS---VGK 187 (404)
T ss_pred EEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchh---cCC
Confidence 9998763 567899999998864 7889999999999999975 6778888999999999999997 332
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--------cccCCCChHHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--------SSFGLVSSQTQ 310 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--------~~~~~~s~~~q 310 (464)
. + .++... +..+++.|++|.+| |+ ++|+++.+++......... ...++.+....
T Consensus 188 ~--~-~~~~~~-------------~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~ 249 (404)
T PRK14012 188 V--P-IDLSKL-------------KVDLMSFSAHKIYG-PK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQI 249 (404)
T ss_pred c--c-cCcccC-------------CCCEEEEehhhccC-CC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHH
Confidence 2 1 121111 33456779999887 54 6899887654322111100 00111222222
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC-----CccEEEEEecCcccccCChhHHHHHHHHH
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS-----NAGLFCWVDMRHLLVSNTFEAEKELWKKI 384 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-----~~g~f~~~~l~~~~~~~~~~~~~~l~~~l 384 (464)
..+.+++... +....+..+..++.++++.+.|+++ ++.+... ...+++|+.+... .++...+
T Consensus 250 ~~l~~al~~~---~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l 317 (404)
T PRK14012 250 VGMGEAARIA---KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG---------ESLIMAL 317 (404)
T ss_pred HHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH---------HHHHHhC
Confidence 2222332211 2223444556666777777777765 4544321 1233455554321 1243333
Q ss_pred HHhcCeEEeCCCCCCCC-----------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 385 IFEVGLNISPGSSCHCN-----------------EPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~~-----------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.++.|..|..|.+. ..+.+|++++. .++++++.+++.|++++++.+.
T Consensus 318 ---~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 318 ---KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred ---CCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 37888777665432 13689999988 7999999999999999887654
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=185.53 Aligned_cols=217 Identities=16% Similarity=0.165 Sum_probs=157.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----ccc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~ 152 (464)
..+|+.+ ....|++++|++.+ .+++++|+|+++++..++.+++++||.|+++.|+|+..... ...
T Consensus 47 Y~R~~np-t~~~Le~~lA~leg----------~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~ 115 (388)
T PRK08861 47 YTRSGNP-NRGLLEQTLSELES----------GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANK 115 (388)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhc
Confidence 4555554 35889999999874 47899999999999999999999999999999999864432 222
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |++++.++. .|++.+++++.+ ++++|++++|+||||.+++. ++|.++|+++|+++|+|++|.
T Consensus 116 ~-gi~v~~vd~-------~d~e~l~~~i~~------~tklV~lesP~NPtG~v~dl---~~I~~la~~~gi~vIvDea~~ 178 (388)
T PRK08861 116 G-DFKVQFVDQ-------SDAAALDAALAK------KPKLILLETPSNPLVRVVDI---AELCQKAKAVGALVAVDNTFL 178 (388)
T ss_pred C-CeEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCcc
Confidence 3 677777752 378888887754 78999999999999999874 567778889999999999998
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCC-CccEEEEEEecCHHHHHHHHHhccc--CCCChHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM-PGFRVGMIYSNNERVVSAATKMSSF--GLVSSQT 309 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~-~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~ 309 (464)
...+. . + . .+ +..+++.|++|.++- .++..|++++.++.+.+.++..... ..+++..
T Consensus 179 ~~~~~-~--p-l---~~-------------GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~ 238 (388)
T PRK08861 179 TPVLQ-K--P-L---EL-------------GADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFD 238 (388)
T ss_pred ccccC-C--C-c---cc-------------CCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHH
Confidence 54322 1 1 1 11 344789999999863 4578999988666565544433332 2356666
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 310 QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
...+..-++. +.-+.++..+....+.+.|+.+
T Consensus 239 a~l~~rgl~T-------l~lR~~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 239 SYMTLRGIRT-------LGARMRVHEESAQQILAYLQTQ 270 (388)
T ss_pred HHHHHhcCCC-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 6655555554 3334455566677788888876
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=185.90 Aligned_cols=293 Identities=18% Similarity=0.216 Sum_probs=206.2
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCC-CCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCCCCh----hhhcccCCCcE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFD-PNKLVLTAGSTAANETLMFCL---ADPGDAFLLPTPYYPGF----DRDLKWRPGVE 157 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~-~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~----~~~~~~~~g~~ 157 (464)
+.+.|+.+|++++ .+ .++|++|.|+|++++++..++ ..+||.|++..--|+.. ....+.. |++
T Consensus 68 ~e~aRe~va~~~~--------a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~-Ga~ 138 (405)
T COG0520 68 YEAAREAVARFLN--------ADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRT-GAK 138 (405)
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhc-CcE
Confidence 5788899999986 56 489999999999999999998 68999999998887643 3334444 999
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccC
Q 037587 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD 237 (464)
Q Consensus 158 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~ 237 (464)
++.+|+++ +..++++.++..+.+ ++|+|.+++.+|-||.+.| +++|+++|+++|+++++|.+++- .
T Consensus 139 v~~i~~~~--~g~~~~~~~~~~i~~------~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~---~ 204 (405)
T COG0520 139 VRVIPLDD--DGLLDLDALEKLITP------KTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA---G 204 (405)
T ss_pred EEEEecCC--CCCcCHHHHHHhcCC------CceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECcccc---C
Confidence 99999873 456889999997754 8999999999999999965 88899999999999999999873 2
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc-CCCCCccEEEEEEecCHHHHHHHHHhc----------------
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK-DFSMPGFRVGMIYSNNERVVSAATKMS---------------- 300 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK-~~g~~GlRiG~l~~~~~~~~~~~~~~~---------------- 300 (464)
-. ..++.. .+..++..|.+| .+|..| +|.++++++.+.+. ....
T Consensus 205 h~---~idv~~-------------l~~Df~afsgHKwl~gP~G--iGvLy~r~~~l~~l-~P~~~gg~~~~~~~~~~~~~ 265 (405)
T COG0520 205 HL---PIDVQE-------------LGCDFLAFSGHKWLLGPTG--IGVLYVRKELLEEL-EPFLGGGGMIEYVSRDEGVT 265 (405)
T ss_pred cc---CCCchh-------------cCCCEEEEcccccccCCCc--eEEEEEchHHHhhc-CCcccCCCceeeeccccccc
Confidence 11 123222 267788999999 666336 89999965544332 1100
Q ss_pred ---c-----cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC---ccEEEEEecCcc
Q 037587 301 ---S-----FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSN---AGLFCWVDMRHL 368 (464)
Q Consensus 301 ---~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~---~g~f~~~~l~~~ 368 (464)
. ..+++......+.++++--. .--+++..+..++..+++.+.|.+. +++++.+. .+-.+.+.++..
T Consensus 266 ~~~~p~rfe~gTpn~~~~i~l~aAl~~~~--~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~ 343 (405)
T COG0520 266 LAELPLRFEAGTPNIAGAIGLAAALDYLL--EIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI 343 (405)
T ss_pred ccCcchhhccCCchHHHHHhHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC
Confidence 0 01122222222333333211 1113455566667777788888887 68887643 233555665532
Q ss_pred cccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC------CCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 369 LVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN------EPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 369 ~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
...++... |.++||.++.|..|... .++.+|+|++. .|+||++.+++.|+++.+
T Consensus 344 -------~~~dv~~~-L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 344 -------HPHDVATL-LDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred -------CHHHHHHH-HHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 11234444 56779999999877532 24459999988 799999999999998765
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=185.94 Aligned_cols=211 Identities=18% Similarity=0.228 Sum_probs=154.2
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~ 160 (464)
-..+|++.+|++.+ .+..++++++++++..++.+++++||.|+++.++|...... +... |+++..
T Consensus 41 ~~~~le~~la~l~g----------~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~-g~~~~~ 109 (369)
T cd00614 41 TVDALEKKLAALEG----------GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKL-GIEVTF 109 (369)
T ss_pred hHHHHHHHHHHHHC----------CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhc-CeEEEE
Confidence 35788888888875 24567788889999999999999999999999999876543 3344 888888
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+ |++.+++.+++ ++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|++|+...+. .
T Consensus 110 v~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~-~- 171 (369)
T cd00614 110 VDPD-------DPEALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ-R- 171 (369)
T ss_pred eCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC-C-
Confidence 8753 57888887754 7899999999999999976 677888899999999999999753221 1
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhcc-c-CCCChHHHHHHHHHc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSS-F-GLVSSQTQYLLSRML 317 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~~l 317 (464)
. ..+ +..+++.|+||.+|.+| ++.||++++++.+.+.++.... + ..++++.+.++...+
T Consensus 172 ----~-~~~-------------g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l 233 (369)
T cd00614 172 ----P-LEL-------------GADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGL 233 (369)
T ss_pred ----h-hhh-------------CCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCC
Confidence 1 111 45688999999997565 8999999976455554443332 2 235566555555555
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG 349 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 349 (464)
+. +..+.++..++...+.+.|++++
T Consensus 234 ~t-------l~~r~~~~~~na~~la~~L~~~~ 258 (369)
T cd00614 234 KT-------LPLRMERHSENALKVAEFLEKHP 258 (369)
T ss_pred CC-------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 43 33345556677788888888873
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=185.80 Aligned_cols=211 Identities=19% Similarity=0.248 Sum_probs=148.8
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEE
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIV 159 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~ 159 (464)
....+|++++|++++ .+ ..+ +++++++++..++.+++++||+|+++.|+|+..... +... |+++.
T Consensus 61 p~~~~Le~~lA~~~g--------~~-~~i-~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~-gi~~~ 129 (388)
T PRK07811 61 PTRTALEEQLAALEG--------GA-YGR-AFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRW-GVEYT 129 (388)
T ss_pred ccHHHHHHHHHHHhC--------CC-ceE-EeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCC-CeEEE
Confidence 356899999999986 22 234 445668999999999999999999999999864433 2223 77777
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 160 PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 160 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
.++. .|++.+++.+.+ ++++|++++|+||||.+ .++++|+++|+++|+++|+|++|+...+. .
T Consensus 130 ~~d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~~---~dl~~I~~la~~~gi~lIvD~a~a~~~~~-~ 192 (388)
T PRK07811 130 PVDL-------SDLDAVRAAITP------RTKLIWVETPTNPLLSI---TDIAALAELAHDAGAKVVVDNTFASPYLQ-Q 192 (388)
T ss_pred EeCC-------CCHHHHHHhcCc------CCeEEEEECCCCCccee---cCHHHHHHHHHHcCCEEEEECCCCccccC-C
Confidence 7653 378899888754 78999999999999987 46888888999999999999999753221 1
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhccc-C-CCChHHHHHHHHH
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSSF-G-LVSSQTQYLLSRM 316 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~~-~-~~s~~~q~~~~~~ 316 (464)
++ .+ +..+++.|++|.++.+| .+.||++++++.+.+.+...... . ..++.....+...
T Consensus 193 -----p~-~~-------------gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~ 253 (388)
T PRK07811 193 -----PL-AL-------------GADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRG 253 (388)
T ss_pred -----ch-hh-------------CCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 11 11 33488999999997544 67899998777666655544333 2 2344444444444
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
|+. +..+.++..++...+.+.|+++
T Consensus 254 L~t-------l~~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 254 LKT-------LAVRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred cCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 443 3334444556677778888776
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=186.70 Aligned_cols=217 Identities=14% Similarity=0.079 Sum_probs=152.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hccc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~ 152 (464)
..+|+.+ ...+|++.+|++.+ .+++++++|+++++.+++.+++++||.|+++.|+|+.+.. .+..
T Consensus 59 Y~r~~~p-t~~~Le~~lA~l~g----------~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 127 (394)
T PRK07050 59 YGLHATP-TSLALAQRLAEIEG----------GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARD 127 (394)
T ss_pred cCCCCCH-HHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHh
Confidence 3445433 24677777777753 4589999999999999999999999999999999998664 3444
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |++++.++.. +.+.+++.+++ ++++|++++|+||+|.. .++++|+++|+++|+++|+|++|.
T Consensus 128 ~-Gi~v~~vd~~-------~~~~l~~~i~~------~tklV~le~p~Np~~~~---~di~~I~~ia~~~gi~livD~a~a 190 (394)
T PRK07050 128 F-GITVRFYDPL-------IGAGIADLIQP------NTRLIWLEAPGSVTMEV---PDVPAITAAARARGVVTAIDNTYS 190 (394)
T ss_pred c-CeEEEEECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccH---hhHHHHHHHHHHcCCEEEEECCcc
Confidence 5 9998887632 34667776643 78999999999999754 789999999999999999999997
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhccc--CCCChHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQT 309 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~ 309 (464)
...+- . + + ..+..+++.|++|.++ ..+++.|++++.++.+.+.++..+.. ..+++..
T Consensus 191 ~~~~~-~-----~---l-----------~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~ 250 (394)
T PRK07050 191 AGLAF-K-----P---F-----------EHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADD 250 (394)
T ss_pred ccccc-C-----H---H-----------HcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHH
Confidence 42211 1 1 1 1145688999999995 34567899888666666655544332 2345554
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 310 QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
...+...+++ +..+.++..++...+.+.|+++
T Consensus 251 a~l~lr~l~t-------l~~Rl~~~~~~a~~la~~L~~~ 282 (394)
T PRK07050 251 CSLVLRGLPS-------LQVRLAAHDRSALEVAEWLKAR 282 (394)
T ss_pred HHHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 4444433333 2234444555556777777765
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=186.92 Aligned_cols=344 Identities=15% Similarity=0.105 Sum_probs=201.0
Q ss_pred CCCCCCCCceEEeecccc--cc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAEN--QL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.....+||+..+-- .+ ..|.+.+++.+.... .....+ .. ..+..+.+.+.+.+..
T Consensus 24 ~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~----------~~~~~~--~~--~~~~~~~~~~~l~~~~--- 86 (400)
T PTZ00125 24 FVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQK----------LTLTSR--AF--YNDVLGLAEKYITDLF--- 86 (400)
T ss_pred EEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHh----------cccccc--cc--cCHHHHHHHHHHHhCC---
Confidence 444445567899876522 22 346666666654221 011111 00 1234444444444322
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc----------CCCCeEEEcCCCCCChhhhcccCCCcEEEE---EecCCC--CCc
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA----------DPGDAFLLPTPYYPGFDRDLKWRPGVEIVP---IHCSSS--NGF 169 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~----------~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~---v~~~~~--~~~ 169 (464)
..+.+++++++++++..++..+. ..+++|++.+-+|.+.........+..... .+..+. .-.
T Consensus 87 ---~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PTZ00125 87 ---GYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVD 163 (400)
T ss_pred ---CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeC
Confidence 23578999999999999998763 134778888888776543322111211100 000000 000
Q ss_pred ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCH-HHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhh
Q 037587 170 RITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTH-QELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248 (464)
Q Consensus 170 ~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~-~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~ 248 (464)
..|++++++.++. .++++|++..++||||.+++. +.+++|.++|++||+++|+||+|.++...+. .+ . ..
T Consensus 164 ~~d~~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~--~~-~-~~ 234 (400)
T PTZ00125 164 YNDVEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK--LL-A-HD 234 (400)
T ss_pred CCCHHHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hh-H-HH
Confidence 1378999988751 378888887789999999864 5599999999999999999999986433222 11 1 11
Q ss_pred hhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCC---chhh
Q 037587 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSD---KKFT 323 (464)
Q Consensus 249 l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~---~~~~ 323 (464)
. .. ..+.+ .++||.++.+++|+||++++++ +.+.+... ...+..+++.+.++.+.++. .++
T Consensus 235 ~-~~--------~~pd~---~~~sK~l~~g~~~ig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~- 300 (400)
T PTZ00125 235 H-EG--------VKPDI---VLLGKALSGGLYPISAVLANDD-VMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKL- 300 (400)
T ss_pred h-cC--------CCCCE---EEEcccccCCCcCcEEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCH-
Confidence 1 11 11222 2578999833359999999554 44444322 12233567777777665532 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCC-eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 324 CNYMKENRKRLRKRKEMLVSGLKV----AGI-RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~----~g~-~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
.++. +++.+.+.+.|++ .++ ....+ .|.++|+.++... . ....+++..++ ++||.+.|+.
T Consensus 301 ~~~~-------~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~v~~~~~~---~-~~~~~~~~~l~-~~Gv~v~~~~-- 365 (400)
T PTZ00125 301 AENA-------QRLGEVFRDGLKELLKKSPWVKEIRG-KGLLNAIVFDHSD---G-VNAWDLCLKLK-ENGLLAKPTH-- 365 (400)
T ss_pred HHHH-------HHHHHHHHHHHHHHHhcCCCeEEEec-ccEEEEEEEccCc---c-hHHHHHHHHHH-HCCeEEeecC--
Confidence 2222 2233334444433 333 22333 5678888876311 1 12335777776 6799998752
Q ss_pred CCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 399 HCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 399 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.+++||++.. .+++++++++++|.+++++.+.
T Consensus 366 ----~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~~ 398 (400)
T PTZ00125 366 ----DNIIRFAPPLVITKEQLDQALEIIKKVLKSFDS 398 (400)
T ss_pred ----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHhc
Confidence 4689999754 6899999999999999987653
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=185.37 Aligned_cols=215 Identities=17% Similarity=0.208 Sum_probs=149.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccC
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWR 153 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~ 153 (464)
.+|+.+ ...+|++++|++.+ . +..++++++++++.+++.+++++||+|+++.|+|..... .+...
T Consensus 60 ~r~~~p-~~~~le~~lA~l~g--------~--~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~ 128 (403)
T PRK07503 60 SRISNP-TLALLEQRMASLEG--------G--EAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEF 128 (403)
T ss_pred eCCCCc-hHHHHHHHHHHHhC--------C--CcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhC
Confidence 445443 35889999998875 2 234666677889999999999999999999999975332 23445
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
|++++.++.+ |++.+++.+.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.
T Consensus 129 -G~~v~~vd~~-------d~~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~ 191 (403)
T PRK07503 129 -GVTVRHVDLT-------DPAALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCT 191 (403)
T ss_pred -CEEEEEeCCC-------CHHHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 9998888753 67888888764 7899999999999999975 67788888899999999999985
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh--ccc--CCCChH
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM--SSF--GLVSSQ 308 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~--~~~--~~~s~~ 308 (464)
... .. ++ .+ +..++++|+||.+|.+| +|.|++++ ++.+.+.++.. ... ..++++
T Consensus 192 ~~~-~~-----~l-~~-------------g~Di~v~S~tK~l~g~gd~~gG~v~~-~~~l~~~l~~~~~~~~~g~~~s~~ 250 (403)
T PRK07503 192 PYL-QR-----PL-EL-------------GADLVVHSATKYLGGHGDITAGLVVG-GKALADRIRLEGLKDMTGAVMSPF 250 (403)
T ss_pred ccc-CC-----ch-hh-------------CCCEEEccccccccCCCceeEEEEEc-CHHHHHHHHhhhHHhCcCCCCCHH
Confidence 322 22 11 11 34488999999998665 88899986 44454444321 211 234555
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 309 TQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 309 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.+..+...|+. +..+.++..+....+.+.|+++
T Consensus 251 ~a~l~l~~L~t-------l~~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 251 DAFLLMRGLKT-------LALRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred HHHHHHcCcch-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 55554444432 3333333445666677777765
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=186.34 Aligned_cols=208 Identities=14% Similarity=0.196 Sum_probs=147.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
..+|++.+|++.+ .+..++++++++++..++.+++++||.|+++.|+|+..... +... |+++..+
T Consensus 66 ~~~le~~lA~l~g----------~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~-Gi~v~~v 134 (398)
T PRK08249 66 VQAFEEKVRILEG----------AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRM-GVDVTLC 134 (398)
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhC-CeEEEEc
Confidence 4788899999875 23456777778999999999999999999999999875432 3344 8888766
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+. .|++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+..... .
T Consensus 135 d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~-~-- 195 (398)
T PRK08249 135 ET-------GDHEQIEAEIAK------GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQ-N-- 195 (398)
T ss_pred CC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccC-C--
Confidence 53 478899888764 7899999999999999987 666888899999999999999853221 1
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHhcccC--CCChHHHHHHHHHcC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKMSSFG--LVSSQTQYLLSRMLS 318 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~ 318 (464)
+. .+ ...++++|+||.+|.+|.++ |++++ ++.+.+.++...... .+++..+.++..-++
T Consensus 196 ---~l-~~-------------~~Divv~S~sK~l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~ 257 (398)
T PRK08249 196 ---PL-AL-------------GADLVIHSATKFLSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMK 257 (398)
T ss_pred ---ch-hh-------------CCCEEeccCceecCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcc
Confidence 11 11 23367899999998667776 66666 555555554433322 345555554444333
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
. +..+.++..+....+.+.|+++
T Consensus 258 t-------L~~R~~~~~~na~~la~~L~~~ 280 (398)
T PRK08249 258 T-------LKLRVRQQQESAMALAKYLQTH 280 (398)
T ss_pred h-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 2 3444455566777788888875
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-20 Score=185.97 Aligned_cols=333 Identities=13% Similarity=0.090 Sum_probs=202.6
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+ ..|.+.+++.+..+. ......+.......+|.+.++++.
T Consensus 33 ~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~----------~~~~~~~~~~~~~~~l~~~l~~~~------ 96 (401)
T PRK00854 33 VWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGR----------LTLTSRAFRNDQLAPLYEELAALT------ 96 (401)
T ss_pred CEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhh----------ccccccccCCHHHHHHHHHHHhhC------
Confidence 34444556678898654 2223 245566665554221 011111111112234555555442
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC---------CC-CeEEEcCCCCCChhhhcccCCC-------------cEEEE
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD---------PG-DAFLLPTPYYPGFDRDLKWRPG-------------VEIVP 160 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~---------~g-d~Vlv~~p~y~~~~~~~~~~~g-------------~~~~~ 160 (464)
..+.+++++++++++..++.++.. +| ++|++..-+|++....+... + ..+..
T Consensus 97 ----~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 171 (401)
T PRK00854 97 ----GSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGF-STDPDARGGFGPFTPGFRV 171 (401)
T ss_pred ----CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhc-cCCccccccCCCCCCCeEE
Confidence 235899999999999999988742 23 67888887776643222111 1 11222
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHH-HHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQ-ELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~-~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
++. .|++.+++.+.+ ++++|++.+|+||+|.+++++ .+++|.++|++||+++|+||+|.++.+.+.
T Consensus 172 ~~~-------~d~~~le~~i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~ 238 (401)
T PRK00854 172 VPF-------GDAEALEAAITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK 238 (401)
T ss_pred eCC-------CCHHHHHHHhCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch
Confidence 221 378889888753 789999999999999999754 599999999999999999999986433221
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHH
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRM 316 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~ 316 (464)
.+ . ... .+. . ..++ .+||.++ .| +|+|+++++++ +.+.+..... .+..+++.+.++.+.
T Consensus 239 --~~-~-~~~-~g~-------~-~D~~---~~~K~l~-gg~~~ig~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aa~~a~ 300 (401)
T PRK00854 239 --LL-A-EEH-EGI-------E-ADVT---LIGKALS-GGFYPVSAVLSNSE-VLGVLKPGQHGSTFGGNPLACAVARAA 300 (401)
T ss_pred --Hh-H-Hhh-cCC-------C-CCEE---Eeccccc-CCccCeEEEEEcHH-HHhcccCCCCCCCCCcCHHHHHHHHHH
Confidence 11 1 001 110 1 2222 2479997 55 79999999554 4444432211 223577888888877
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee---ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC---LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS 393 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~ 393 (464)
|+..+ + ....+.++++.+++.+.|++.+... ..+.+. ++.+.+.... ....+++..|+ ++||.+.
T Consensus 301 L~~l~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~-~~~i~~~~~~-----~~~~~~~~~L~-~~GV~v~ 368 (401)
T PRK00854 301 LKVLT---E--EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGL-MLAVELEPEA-----GGARQYCEALK-ERGLLAK 368 (401)
T ss_pred HHHHH---H--cCHHHHHHHHHHHHHHHHHhhccCceEEEeccce-EEEEEEecCc-----hhHHHHHHHHH-HCCeEEe
Confidence 75321 1 2245666677788888888764321 234444 4444442210 12235777776 5699997
Q ss_pred CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 394 PGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 394 pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
+. ..+++|+++.. .+++++++++++|++++.
T Consensus 369 ~~------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 369 DT------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred cC------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 53 24689999864 699999999999998874
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=184.41 Aligned_cols=334 Identities=16% Similarity=0.086 Sum_probs=207.2
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++.+ ....+... ...+....+|+.+.+.
T Consensus 8 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~-~~~~~~~~la~~l~~~---- 69 (382)
T PLN00144 8 KLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAG-------------TLAHVSNV-YHTIPQVELAKRLVAS---- 69 (382)
T ss_pred EEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHH-------------hcCCcccc-ccCHHHHHHHHHHHhc----
Confidence 3334456678888655 2233 34666666666422 11111111 1234455666666432
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc---C------C------CCeEEEcCCCCCChhhhcccCCCcE------------
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA---D------P------GDAFLLPTPYYPGFDRDLKWRPGVE------------ 157 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~---~------~------gd~Vlv~~p~y~~~~~~~~~~~g~~------------ 157 (464)
...+.|+++++++|++..+++... . + ..+|+....+|++....+....+-.
T Consensus 70 --~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~ 147 (382)
T PLN00144 70 --SFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPG 147 (382)
T ss_pred --CCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCC
Confidence 124689999999999999988642 1 0 2468888888887653322211211
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHH--HHHHHHHHhhCCeEEEEeccccccc
Q 037587 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQE--LNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 158 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~--l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
+..++. .|++.+++.+.. .++++|++.--+|| |.+++.+. +++|.++|++||+++|+||+|.++.
T Consensus 148 ~~~~~~-------~d~~~l~~~~~~-----~~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~g 214 (382)
T PLN00144 148 VTFVEY-------GNLEAARKLIQK-----GKTAAVFVEPVQGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLG 214 (382)
T ss_pred eEEeCC-------CCHHHHHHhcCC-----CCeEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 111111 267888877642 36666655423788 54554444 9999999999999999999998754
Q ss_pred cCCCCCCccc-hhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHH
Q 037587 236 FDSPSSSFIS-IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYL 312 (464)
Q Consensus 236 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~ 312 (464)
..+. .+.. ...+ .++ +.||||.++ +|+|+||++++++ +.+.+.. ....+..+++++++
T Consensus 215 r~g~--~~~~~~~~~-----------~PD----i~t~sK~l~-~G~pig~v~~~~~-~~~~~~~~~~~~T~~~~pl~~aa 275 (382)
T PLN00144 215 RTGY--LWAHEAYGV-----------EPD----IMTLAKPLA-GGLPIGAVLVTEK-VASAINPGDHGSTFAGGPLVCNA 275 (382)
T ss_pred ccch--HhhhhhcCC-----------CCC----EEEeccccc-CCcceEEEEEcHH-HHhccCCCCCCCCCCCCHHHHHH
Confidence 3332 1111 1122 112 679999998 9999999999544 4444332 22223467788888
Q ss_pred HH---HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcC
Q 037587 313 LS---RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVG 389 (464)
Q Consensus 313 ~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~g 389 (464)
+. .+++++++ .++++++.+.++ +.+.+.+.+++........|+++|+++.. . ...++..+ .++|
T Consensus 276 a~a~l~~i~~~~~-~~~~~~~g~~l~---~~l~~~~~~~~~~~~vrg~G~~~~l~l~~--~------~~~~~~~~-~~~G 342 (382)
T PLN00144 276 ALAVLDKISKPGF-LASVAKKGEYLR---ELLRRKLGGNPHVKEVRGVGLLVGIQLDV--P------AGPLVDAC-RDSG 342 (382)
T ss_pred HHHHHHHHhhchH-HHHHHHHHHHHH---HHHHHHHhhCCCceeeecCceEEEEEecC--c------cHHHHHHH-HHCC
Confidence 77 55666555 556666666553 34555555553211112378999999831 1 12456665 4689
Q ss_pred eEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 390 LNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 390 I~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
|.+.|+.. .+.+|++++. ++++++++++++|.+++.+.
T Consensus 343 v~i~~~~~-----~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 343 LLVLTAGK-----GDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred eEEeecCC-----CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 99998731 3689999988 89999999999999998753
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=183.15 Aligned_cols=215 Identities=18% Similarity=0.265 Sum_probs=151.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccC
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWR 153 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~ 153 (464)
.+|+.+ -..+|++.++++++ . +.+++++++++++..++.+++++||+|+++.+.|+.... .+...
T Consensus 49 ~r~~~p-~~~~le~~la~l~g--------~--~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~ 117 (380)
T TIGR01325 49 SRYANP-TVAAFEERIAALEG--------A--ERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRF 117 (380)
T ss_pred ecCCCc-hHHHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHh
Confidence 456544 35888999998874 2 467889999999999999999999999999998876432 34445
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
|++++.++.+ |++.+++.+++ ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|..
T Consensus 118 -g~~v~~v~~~-------d~~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~ 180 (380)
T TIGR01325 118 -GIEVSFVDPT-------DLNAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFAT 180 (380)
T ss_pred -CCEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 8998888753 67888877653 7899999999999999965 67788888899999999999975
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHh-cccC-CCChHHH
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKM-SSFG-LVSSQTQ 310 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~-~~~~-~~s~~~q 310 (464)
..+. . + ..+ +..+++.|+||.++.+|.++ |+++++++ +.+.++.. ...+ ..++...
T Consensus 181 ~~~~-~-----p-l~~-------------g~Divv~S~sK~l~g~g~~~gG~vv~~~~-~~~~l~~~~~~~g~~~~p~~a 239 (380)
T TIGR01325 181 PVLQ-Q-----P-LKL-------------GADVVVYSATKHIDGQGRVMGGVIAGSEE-LMAEVAVYLRHTGPAMSPFNA 239 (380)
T ss_pred cccC-C-----c-hhh-------------CCCEEEeeccceecCCCCeEEEEEEeCHH-HHHHHHHHHHhhCCCCCHHHH
Confidence 3221 1 1 111 34577889999998788876 67777544 44434332 2232 2333333
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
. .+++..+. +..+.++..+.+..+.+.|+++
T Consensus 240 ~---~~l~~l~t----l~~r~~~~~~~a~~la~~L~~~ 270 (380)
T TIGR01325 240 W---VLLKGLET----LSLRMQKQFDSALAIAEWLQAQ 270 (380)
T ss_pred H---HHHhccCc----HHHHHHHHHHHHHHHHHHHHcC
Confidence 3 33333332 4445556666777888888876
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=184.57 Aligned_cols=216 Identities=15% Similarity=0.207 Sum_probs=149.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh----hhccc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD----RDLKW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~ 152 (464)
..+|+.+ ...+|++++|++++ . +..++++++++++..++.+++.+||.|+++.|.|+... ..+..
T Consensus 53 y~r~~~p-~~~~le~~lA~l~g--------~--~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~ 121 (391)
T TIGR01328 53 YSRLGNP-TVSNLEGRIAFLEG--------T--EAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTK 121 (391)
T ss_pred eeCCCCc-hHHHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhc
Confidence 3455544 34789999999986 2 23577777788999999999999999999999887543 22344
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |+++..++++ |++.+++.+.+ ++++|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+
T Consensus 122 ~-G~~~~~vd~~-------d~e~l~~~i~~------~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 122 F-GIQVDFINMA-------IPEEVKAHIKD------NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred C-CeEEEEECCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCc
Confidence 4 8888888753 68888888764 7899999999999999976 6677888889999999999997
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHh--ccc-C-CCCh
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKM--SSF-G-LVSS 307 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~--~~~-~-~~s~ 307 (464)
...+ .. .+ .. ...+++.|+||.+|.+|.++ |++++ ++.+.+.++.. ... . .+++
T Consensus 185 ~~~~-~~-----~~-~~-------------g~Divv~S~sK~lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~ 243 (391)
T TIGR01328 185 TPML-TN-----PV-AL-------------GVDVVVHSATKYIGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISP 243 (391)
T ss_pred hhcc-CC-----ch-hc-------------CCCEEEccccccccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCc
Confidence 4322 11 11 11 33478899999999888775 66666 44544444422 112 2 2444
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 308 QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 308 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
+...++...++. +..+.++..+....+.+.|+++
T Consensus 244 ~~a~l~l~~L~t-------l~~r~~~~~~na~~la~~L~~~ 277 (391)
T TIGR01328 244 FDAWLILRGLKT-------LNIRMKRHSENAMKVAEYLKSH 277 (391)
T ss_pred HHHHHHHhCcCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 444444443332 2334455566677778888775
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=190.75 Aligned_cols=281 Identities=15% Similarity=0.179 Sum_probs=189.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC----CC-CeEEEcCCCCCChhhh---cccCCCcE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD----PG-DAFLLPTPYYPGFDRD---LKWRPGVE 157 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~----~g-d~Vlv~~p~y~~~~~~---~~~~~g~~ 157 (464)
..++|+.++++++ +++++|++|+|+++++..++.++.. +| +.|++....|+.+... ++.. |++
T Consensus 44 ~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~-G~~ 114 (353)
T TIGR03235 44 VERARKQVAEALG--------ADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERN-GFT 114 (353)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhc-CCE
Confidence 3567777887775 6788999999999999999888753 55 7788887666654333 3445 999
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccC
Q 037587 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD 237 (464)
Q Consensus 158 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~ 237 (464)
++.+++++ ++.+|++++++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++++ ++
T Consensus 115 v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~---~g 180 (353)
T TIGR03235 115 VTYLPVDE--SGRIDVDELADAIRP------DTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQV---VG 180 (353)
T ss_pred EEEEccCC--CCcCCHHHHHHhCCC------CCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhh---cC
Confidence 99999863 467899999988753 6889999999999999987 6778888999999999999987 33
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHH-HHHh---------cccCCCCh
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA-ATKM---------SSFGLVSS 307 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~-~~~~---------~~~~~~s~ 307 (464)
.. + .++. ..+..+++.|++|.+|.+| +|+++.+++.+... .... ...++.+.
T Consensus 181 ~~--~-~~~~-------------~~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 242 (353)
T TIGR03235 181 KI--T-VDLS-------------ADRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPV 242 (353)
T ss_pred Cc--c-cccc-------------ccCCCEEEeehhhcCCCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCCh
Confidence 22 1 1111 1245577789999987666 79998865432111 1100 01223344
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCcc---EEEEEecCcccccCChhHHHHHHHHH
Q 037587 308 QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAG---LFCWVDMRHLLVSNTFEAEKELWKKI 384 (464)
Q Consensus 308 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g---~f~~~~l~~~~~~~~~~~~~~l~~~l 384 (464)
....++.++++. +.+..+..+++++++++.+.+.|.+.|+++..+..+ .++.+.++. . . ..++...
T Consensus 243 ~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-~-----~-~~~v~~~- 311 (353)
T TIGR03235 243 HLIVGMGEAAEI---ARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDG-V-----N-SEALIVN- 311 (353)
T ss_pred HHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCC-c-----C-HHHHHHH-
Confidence 444444444442 133456677888889999999998888887643221 133333331 1 1 1234444
Q ss_pred HHhcCeEEeCCCCCCCCC--CCeEEEEeecCCHHHHHH
Q 037587 385 IFEVGLNISPGSSCHCNE--PGWFRICFANITEETLQV 420 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~~~--~~~~Ris~~~~~~e~l~~ 420 (464)
|++ ||.|.+|..|.... +.++|.+++. +++++..
T Consensus 312 L~~-~i~v~~g~~~~~~~~~~~~~l~~~g~-~~~~~~~ 347 (353)
T TIGR03235 312 LRA-DAAVSTGSACSSSKYEPSHVLQAMGL-DTDRARG 347 (353)
T ss_pred HhC-CeEEEchhhcCCCCCCCCHHHHHcCC-CHHHhCc
Confidence 455 99999999987543 3468888884 6555543
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=184.86 Aligned_cols=217 Identities=17% Similarity=0.215 Sum_probs=154.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh----hhhccc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF----DRDLKW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~ 152 (464)
..+|+.+. ..+|++.+|++.+ .++.+++++++.++..++.+++.+||.|+++...|++. ...+..
T Consensus 64 Y~r~~~p~-~~~le~~lA~l~g----------~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~ 132 (403)
T PRK07810 64 YSRYGNPT-VSMFEERLRLIEG----------AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR 132 (403)
T ss_pred eeCCCCch-HHHHHHHHHHHhC----------CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHH
Confidence 45566543 5788889988875 23677888888899889889999999999988666443 334454
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |++++.++. .|++++++++.+ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+
T Consensus 133 ~-G~~v~~vd~-------~d~~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 133 W-GVETVFVDG-------EDLSQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred c-CcEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCC
Confidence 5 999988864 278899988764 7899999999999999875 7778888999999999999997
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHh-ccc-CCCChHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKM-SSF-GLVSSQT 309 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~-~~~-~~~s~~~ 309 (464)
...+. . +. .+ +..+++.|++|.++..|.++ |+++++++.+.+.++.. ... ..++++.
T Consensus 196 ~~~~~-~-----~~-~~-------------gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~ 255 (403)
T PRK07810 196 TPLLQ-R-----GL-PL-------------GADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFN 255 (403)
T ss_pred ccccC-C-----hh-hc-------------CCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHH
Confidence 43221 1 10 11 34678999999998788887 88888665554333332 222 2456666
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 310 QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
++++...|+. +..+.++..+....+.+.|+++
T Consensus 256 a~l~l~~L~t-------l~~R~~~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 256 AWVLLKGLET-------LALRVRHSNASALRIAEFLEGH 287 (403)
T ss_pred HHHHHhccCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 6666665554 3344444555666677788776
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-20 Score=182.75 Aligned_cols=172 Identities=19% Similarity=0.340 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..+++++++++.+..+ .+++++|+|+++++.+++.++ ++|||+|+++.|+|..+...+... |++++.+++++
T Consensus 30 g~~~~~~e~~la~~~g------~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~-G~~~v~vd~d~ 102 (376)
T TIGR02379 30 GPFSRRCETWLENRTG------TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLR-GAKIVFVDIRP 102 (376)
T ss_pred cHHHHHHHHHHHHHhC------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEecCC
Confidence 4567777777766543 468999999999999999887 799999999999999888777766 99999999985
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-cCCCCCCcc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-FDSPSSSFI 244 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~~~~~~~~~ 244 (464)
++|.+|++.+++.+.+ ++++|+ |+||+|...+ +++|.++|+++|++||+|++|+... +.+. ..
T Consensus 103 -~~~~~d~~~le~~i~~------~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~--~~- 166 (376)
T TIGR02379 103 -DTMNIDETLIESAITH------RTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGR--AL- 166 (376)
T ss_pred -CcCCCCHHHHHHhcCc------CceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCc--cc-
Confidence 4588999999998764 788776 5678998875 6678888999999999999998543 3322 11
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCC----cCCCCCccEEEEEEecCHHHHHHHHHhc
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLS----KDFSMPGFRVGMIYSNNERVVSAATKMS 300 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~S----K~~g~~GlRiG~l~~~~~~~~~~~~~~~ 300 (464)
+....+.+|| |.+. +|.+.|+++++++.+.+.++.++
T Consensus 167 ------------------g~~~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~ 207 (376)
T TIGR02379 167 ------------------GSIGHLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIR 207 (376)
T ss_pred ------------------CCCCCEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHH
Confidence 1111233344 8885 78889999998777777665543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-19 Score=177.62 Aligned_cols=376 Identities=14% Similarity=0.104 Sum_probs=214.4
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+ ..|.+.+++.++.+ ....+.......+.+..+|+.+-+...
T Consensus 33 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~-------------~~~~~~~~~~~~~~~~~la~~L~~~~p- 98 (443)
T PRK08360 33 AKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTD-------------KLIHYTPIYGFPVEPLLLAEKLIEIAP- 98 (443)
T ss_pred eEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHH-------------hccCccccccCcHHHHHHHHHHHHhCC-
Confidence 35555566788998766 4444 34667777666522 222222211224555666666654321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc------------EEEEEecCCC--C
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCSSS--N 167 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~~~--~ 167 (464)
..-+.++++++++|++..+++... .....|+...-+|++....+....|. .+..++.... .
T Consensus 99 ---~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (443)
T PRK08360 99 ---GDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRC 175 (443)
T ss_pred ---CCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccc
Confidence 223589999999999999988642 23357888887887653221111011 1222322110 0
Q ss_pred Ccc--------cCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCC-HHHHHHHHHHHhhCCeEEEEeccccccccC
Q 037587 168 GFR--------ITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMT-HQELNHLINFSKSKRIHIVSDEIYSGTVFD 237 (464)
Q Consensus 168 ~~~--------~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s-~~~l~~i~~~~~~~~~~lI~Deay~~~~~~ 237 (464)
.+. .+++.+++.++.. ..+.++++|++. | +||+|.+++ .+.++++.++|+++|+++|+||+|.++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~iAAvi~e-P~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 253 (443)
T PRK08360 176 PFGKEPGSCKMECVEYIKEKFEGE-VYAEGVAALFAE-PIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRT 253 (443)
T ss_pred cccCchhhhHHHHHHHHHHHHHhc-cCCCCeEEEEEC-CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 011 1233444444321 113467776665 6 699999887 557999999999999999999999975443
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHH
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSR 315 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~ 315 (464)
+. . .....+ + ..+.++ +|||.+| +|+|+||++++ +.+.+.+..... .+..+++.+.++.+
T Consensus 254 G~--~-~a~~~~--~--------~~pDii---tlsK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a 315 (443)
T PRK08360 254 GK--W-FAIEHF--G--------VEPDII---TLGKPLG-GGLPISATIGR-AEIMDSLPPLAHAFTLSGNPVASAAALA 315 (443)
T ss_pred cc--c-hhhhhc--C--------CCCCEE---Eeccccc-CCceeEEEEEc-HHHHhhhcCCCCCCCCCcCHHHHHHHHH
Confidence 32 1 111111 1 112333 7899999 99999999995 445554443221 22356777777777
Q ss_pred HcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccc--cCChhHHHHHHHHHHHhcCeEEe
Q 037587 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV--SNTFEAEKELWKKIIFEVGLNIS 393 (464)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~--~~~~~~~~~l~~~ll~~~gI~v~ 393 (464)
+++.-.- .+..++.++.-...++.|.+...++++......-|+++-+++..... .........+...++ ++||++.
T Consensus 316 ~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~ 393 (443)
T PRK08360 316 VIEEIEE-KNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAW-ELGLIVT 393 (443)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHH-HCCeEEe
Confidence 6653211 11122222222222222322222233221122345677777642211 111122234555554 6799986
Q ss_pred CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCccccccccceeeeee
Q 037587 394 PGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNPQMLLLQRRSIIGKW 448 (464)
Q Consensus 394 pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 448 (464)
+.. .+.+|++.+. +++++++++++++.+++...+..+.+.++..|..-|
T Consensus 394 ~~~------~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 443 (443)
T PRK08360 394 FFS------GNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEEGKVPDEVLEKVKGW 443 (443)
T ss_pred ecC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCCHHHHHhhcCC
Confidence 431 3579997766 799999999999999999988877776666666655
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-19 Score=180.69 Aligned_cols=358 Identities=11% Similarity=0.055 Sum_probs=202.9
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ ...+ ..|.+.+++.++.+ ....+.......+.+..+|+.+.+...
T Consensus 25 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~-------------~~~~~~~~~~~~~~~~~la~~l~~~~p- 90 (420)
T TIGR00700 25 AILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVA-------------EFTHTCFMVTPYEGYVALAEKLNRIAP- 90 (420)
T ss_pred eEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHH-------------hccCccccccCChHHHHHHHHHHHhCC-
Confidence 34445556778998765 2323 34666666666422 111111111113334455555543321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC--------c-----EEEEEecCC--C
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG--------V-----EIVPIHCSS--S 166 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g--------~-----~~~~v~~~~--~ 166 (464)
....+.++++++++|++..+++... ....+|+...-+|++....+....+ . .+..++... .
T Consensus 91 --~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (420)
T TIGR00700 91 --GSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYR 168 (420)
T ss_pred --CCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccc
Confidence 0112589999999999999888642 2335788888888776432221101 0 112222210 0
Q ss_pred C-------CcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHH-HHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 167 N-------GFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQE-LNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 167 ~-------~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~-l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
. .+.-+++.+++.+.. .....++.+|++.--..-+|..++..+ +++|.++|++||+++|+||+|.++.+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g 247 (420)
T TIGR00700 169 DGLLDKQLSTDGELAAARAIFVI-DVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG 247 (420)
T ss_pred ccccccchhHHHHHHHHHHHHHh-hcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc
Confidence 0 011113455554421 112346766666433566788665554 9999999999999999999999864433
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRM 316 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~ 316 (464)
. +.+.... +.+..+.+|||.++ +|+|+||+++++ .+.+.+.. ....+..++++|+++.+.
T Consensus 248 ~---~~a~~~~-------------~~~pDi~~lsK~l~-~G~pig~v~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~ 309 (420)
T TIGR00700 248 A---MFACEHE-------------GPEPDLITTAKSLA-DGLPLSGVTGRA-EIMDAPAPGGLGGTYAGNPLACAAALAV 309 (420)
T ss_pred h---hHHHhhc-------------CCCCCEEEeecccc-CCcceEEEEecH-HHHhhcCCCCcCCCCCcCHHHHHHHHHH
Confidence 2 1121111 11222447999999 999999999954 45444422 222334678888888655
Q ss_pred cC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCcccc-cCChhHHHHHHHHHHHhcCeE
Q 037587 317 LS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLV-SNTFEAEKELWKKIIFEVGLN 391 (464)
Q Consensus 317 l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~-~~~~~~~~~l~~~ll~~~gI~ 391 (464)
++ +..+ .++.++..+.++++.+.+. .+++ +....+. |+++|+++..... .........+...+ .++||.
T Consensus 310 l~~l~~~~~-~~~~~~~g~~l~~~L~~l~---~~~~~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~ 383 (420)
T TIGR00700 310 LAIIESEGL-IERARQIGRLVTDRLTTLK---AVDPRIGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAA-HAAGLL 383 (420)
T ss_pred HHHHHhccH-HHHHHHHHHHHHHHHHHHH---hhCCCEEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHH-HHCCeE
Confidence 53 3333 4444444444444433332 3333 2333444 6788888742110 11111223344444 468999
Q ss_pred EeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 392 ISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 392 v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
+.|+..|+ +++||+++. ++++++++++++|.+++.
T Consensus 384 i~p~~~f~----~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 384 LLTCGMFG----NIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred EeccCCCC----CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 99987763 589999876 689999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-20 Score=175.30 Aligned_cols=302 Identities=19% Similarity=0.237 Sum_probs=212.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHH--hcC----CCCeEEEcCCCCCChhhhcccC--CCcE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFC--LAD----PGDAFLLPTPYYPGFDRDLKWR--PGVE 157 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~--l~~----~gd~Vlv~~p~y~~~~~~~~~~--~g~~ 157 (464)
..+.|+.||+.++ +++++|++|+|+||+.++++.. ... .|..|++..--|+.....++.+ .|.+
T Consensus 46 ve~AR~~iA~llg--------a~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~ 117 (386)
T COG1104 46 VEEAREQIAKLLG--------ADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFE 117 (386)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCe
Confidence 4567788888876 7889999999999999999987 322 4678999888888776665533 4999
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccC
Q 037587 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD 237 (464)
Q Consensus 158 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~ 237 (464)
|.++|++. +..+|+++|+++|++ ++.+|-+...||-||++.| +++|.++|+++++++.+|.+.+ ++
T Consensus 118 Vtyl~V~~--~G~v~~e~L~~al~~------~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa---~G 183 (386)
T COG1104 118 VTYLPVDS--NGLVDLEQLEEALRP------DTILVSIMHANNETGTIQP---IAEIGEICKERGILFHVDAVQA---VG 183 (386)
T ss_pred EEEeCCCC--CCeEcHHHHHHhcCC------CceEEEEEecccCeeeccc---HHHHHHHHHHcCCeEEEehhhh---cC
Confidence 99999886 346899999999976 7888888899999999954 7778889999999999999998 55
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH------HhcccCCCChHHHH
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT------KMSSFGLVSSQTQY 311 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~------~~~~~~~~s~~~q~ 311 (464)
.- + .++..+ ...+...|-+|.+|..| +|.++.++..-...+. +-...++.+.+...
T Consensus 184 ki--p-i~~~~~-------------~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Iv 245 (386)
T COG1104 184 KI--P-IDLEEL-------------GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIV 245 (386)
T ss_pred ce--e-cccccc-------------CcceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHH
Confidence 43 1 222111 23455668899999778 7888874322111110 00111234444445
Q ss_pred HHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeecCC---ccEEEEEecCcccccCChhHHHHHHHHHHH
Q 037587 312 LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA--GIRCLKSN---AGLFCWVDMRHLLVSNTFEAEKELWKKIIF 386 (464)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~ 386 (464)
++..+++.. .+.++.....+.+.|++|.+.|.+. ++.+.... -...+.+.++.. +. +.....|+
T Consensus 246 g~~~A~~~a---~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv------~g--E~ll~~L~ 314 (386)
T COG1104 246 GFGKAAEIA---VEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV------EG--ESLLLALD 314 (386)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC------cH--HHHHHhcc
Confidence 555554432 3345666677888889999999875 33333221 122333444421 11 34555667
Q ss_pred hcCeEEeCCCCCCCCC-----------------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCccccc
Q 037587 387 EVGLNISPGSSCHCNE-----------------PGWFRICFAN-ITEETLQVALQRIKVFAQSCNPQMLL 438 (464)
Q Consensus 387 ~~gI~v~pg~~f~~~~-----------------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~~~ 438 (464)
.+||.+..|+.|.... .+.+|+|++. .++++++.+++.|.+++++.+..+..
T Consensus 315 ~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~~~~ 384 (386)
T COG1104 315 LAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRELSPL 384 (386)
T ss_pred ccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhhccc
Confidence 8899999999988531 3579999998 78999999999999999998875543
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-20 Score=179.82 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=186.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGV 156 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~ 156 (464)
..+|+.+ ...+|++++|++.+ .+++++++|+++++.+++. ++++||+|+++.+.|......+... ..
T Consensus 48 Y~R~~~p-~~~~le~~lA~leg----------~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~-~~ 114 (364)
T PRK07269 48 YTRTKNP-TRAKLEETLAAIES----------ADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQ-EK 114 (364)
T ss_pred eeCCCCc-cHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHH-Hh
Confidence 4556554 35899999999974 5689999999999999984 6799999999999997655432211 00
Q ss_pred E-EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 157 E-IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 157 ~-~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
+ -+.+ .|..|++++++++++ ++++|++++|+||||.+. ++++|+++|+++|+++|+|++|....
T Consensus 115 ~~~~~~------~~~~d~~~l~~~i~~------~TklV~lesP~NPtg~~~---di~~I~~la~~~gi~vvvD~t~~~~~ 179 (364)
T PRK07269 115 EGRFHF------TYANTEEELIAAIEE------DTDIVYIETPTNPLMVEF---DIEKVAKLAHAKGAKVIVDNTFYSPI 179 (364)
T ss_pred cCcEEE------EecCCHHHHHHhcCc------CceEEEEECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccc
Confidence 0 0111 233578999888864 789999999999999886 68888889999999999999986422
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhccc--CCCChHHHHH
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYL 312 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~ 312 (464)
+ .. + ... ...+++.|++|.++-.| .=.|+++++++.+.+.++..... ...+++....
T Consensus 180 ~-~~-----p-l~~-------------gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l 239 (364)
T PRK07269 180 Y-QR-----P-IEL-------------GADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYL 239 (364)
T ss_pred c-CC-----c-hhh-------------CCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 2 11 1 111 34488999999996323 23578888666665555433322 2356666666
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eee-cCCccEEEEEecCcccccCChhHHHHHH--------
Q 037587 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI-RCL-KSNAGLFCWVDMRHLLVSNTFEAEKELW-------- 381 (464)
Q Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~-------- 381 (464)
+..-|+. +..+.++.++....+.+.|+++ ++ .|. |+.+|++. +.+... .....++
T Consensus 240 ~~~~L~t-------L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~s-f~~~~~------~~~~~f~~~l~~~~~ 305 (364)
T PRK07269 240 LMRGLKT-------LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMIS-FKVADE------TRIPHILNSLKVFTF 305 (364)
T ss_pred HHcCCCc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEE-EEECCH------HHHHHHHHhCCcceE
Confidence 6555554 3444555566777788888876 33 444 77788554 444310 1111111
Q ss_pred -HHHHHhcCeEEeCCCCCCCC-----------CCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 382 -KKIIFEVGLNISPGSSCHCN-----------EPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 382 -~~ll~~~gI~v~pg~~f~~~-----------~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
..+...+.+.+.|+..++.. .++.+|+|++. |+.+.+++-|.++++
T Consensus 306 ~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E~~~dli~dl~~al~ 363 (364)
T PRK07269 306 AESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGI---EDARDLIADLKQALE 363 (364)
T ss_pred ccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhc
Confidence 11112234555565544321 24689999995 456666666666653
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=178.44 Aligned_cols=210 Identities=15% Similarity=0.158 Sum_probs=143.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~~g~~~~~v 161 (464)
..+|++.+|++.+ .+ +.+++++| +.++..++. ++++||+|+++.|.|++... .++.. |++++.+
T Consensus 56 ~~~le~~lA~l~g--------~~-~~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~-G~~v~~v 123 (390)
T PRK08064 56 REALEDIIAELEG--------GT-KGFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRF-GIEHTFV 123 (390)
T ss_pred HHHHHHHHHHHhC--------CC-CeEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHc-CCEEEEE
Confidence 4678888888875 33 45666666 567887775 77899999999999985443 33445 9999988
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++.+++.+.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... ..
T Consensus 124 ~~~-------d~~~l~~~l~~------~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~-~~-- 184 (390)
T PRK08064 124 DMT-------NLEEVAQNIKP------NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLL-QK-- 184 (390)
T ss_pred CCC-------CHHHHHHhcCC------CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccc-cC--
Confidence 753 67888887754 7899999999999999964 66778888899999999999975321 11
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
++ .+ +..+++.|+||.++ .+|...|++++.++.+.+.++.....+......+.+.. ++..-
T Consensus 185 ---~~-~~-------------g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l-~~~gl 246 (390)
T PRK08064 185 ---PL-DL-------------GADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL-VLRGL 246 (390)
T ss_pred ---ch-hh-------------CCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHccc
Confidence 11 12 45678999999985 34566788877666666666655554333222222222 22332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
. .+..+.++..+....+.+.|+++
T Consensus 247 ~----tl~~R~~~~~~~a~~la~~L~~~ 270 (390)
T PRK08064 247 K----TLHVRLEHSSETANKIALYLQEH 270 (390)
T ss_pred C----cHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 24445555566777778888765
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-19 Score=176.54 Aligned_cols=280 Identities=17% Similarity=0.145 Sum_probs=179.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh----hhcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD----RDLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~~g~~~~~v 161 (464)
..+|++++|++.+ . ...+ ++++++.++..++.+++++||+|+++.++|.... ..+... |++++.+
T Consensus 65 ~~~le~~lA~l~g--------~-~~av-~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~-G~~v~~v 133 (389)
T PRK05968 65 VRAFEEMLAKLEG--------A-EDAR-GFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRM-GVEVDYV 133 (389)
T ss_pred HHHHHHHHHHHhC--------C-CcEE-EECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CceEEEe
Confidence 4789999999875 2 2334 4556668999999889999999999999998643 334445 9998888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++.+++.+ . ++++|++++|+||++ +..++++|+++|+++|+++|+|++|+...+. .
T Consensus 134 d~~-------d~~~l~~~i-~------~tklV~ie~pt~~~~---~~~dl~~i~~la~~~gi~vivD~a~a~~~~~-~-- 193 (389)
T PRK05968 134 DGR-------DEEAVAKAL-P------GAKLLYLESPTSWVF---ELQDVAALAALAKRHGVVTMIDNSWASPVFQ-R-- 193 (389)
T ss_pred CCC-------CHHHHHHhc-c------cCCEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcchhcc-C--
Confidence 642 678888776 2 678999987766655 4489999999999999999999999754222 1
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhcc--c-CCCChHHHHHHHHHc
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSS--F-GLVSSQTQYLLSRML 317 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~--~-~~~s~~~q~~~~~~l 317 (464)
++ .+ +..+++.|+||.++.+| ++.|+++++++ +.+.++.... . ..++++.+..+...|
T Consensus 194 ---p~-~~-------------g~Divv~S~tK~l~g~~~~~gG~i~~~~~-~~~~l~~~~~~~~g~~~~~~~A~~~l~~L 255 (389)
T PRK05968 194 ---PI-TL-------------GVDLVIHSASKYLGGHSDTVAGVVAGSKE-HIARINAEAYPYLGAKLSPFEAWLLLRGL 255 (389)
T ss_pred ---ch-hc-------------CCcEEEeeccccccCCCCeEEEEEEECHH-HHHHHHHHHHHhCCCCCChHHHHHHHccc
Confidence 11 11 33477889999997654 68899887544 4443333211 1 235666566555555
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eeecC-----------CccEEEEEecCcccccCChhHHHHHHHHH
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI-RCLKS-----------NAGLFCWVDMRHLLVSNTFEAEKELWKKI 384 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~~~-----------~~g~f~~~~l~~~~~~~~~~~~~~l~~~l 384 (464)
+. +..+.++..+....+.+.|+++ ++ .+..| ..|-.+.+++... ....+++..|
T Consensus 256 ~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~------~~~~~f~~~L 322 (389)
T PRK05968 256 RT-------LPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG------IDVRAFADAL 322 (389)
T ss_pred Cc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH------HHHHHHHHhC
Confidence 53 2333333444566677888776 45 33322 1122455666521 1223465555
Q ss_pred HHhcCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 385 IFEVGLNISPGSSCHC---------------------NEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~---------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+..++.+.-|..+.. -.++.+|+|++. |+.+.+++-|++++++
T Consensus 323 -~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl---E~~~dl~~dl~~al~~ 386 (389)
T PRK05968 323 -KLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL---EGTEALWADLEQALAA 386 (389)
T ss_pred -CccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHH
Confidence 445666655554440 014689999996 4455566666666654
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-19 Score=176.27 Aligned_cols=291 Identities=14% Similarity=0.095 Sum_probs=184.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh--------------cCCCCeEEEcCCCCCChhhhcc
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL--------------ADPGDAFLLPTPYYPGFDRDLK 151 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l--------------~~~gd~Vlv~~p~y~~~~~~~~ 151 (464)
+.+|.++||++++ .+..++.+.+..+...++.++ .+++|.|+...-.|......++
T Consensus 149 h~~LE~~LA~f~g----------~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ 218 (476)
T PLN02955 149 HRLLESSLADLKK----------KEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR 218 (476)
T ss_pred HHHHHHHHHHHHC----------CCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH
Confidence 4678888888885 345566677777777777776 2456788888888877777665
Q ss_pred cCC---CcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEE
Q 037587 152 WRP---GVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVS 227 (464)
Q Consensus 152 ~~~---g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~ 227 (464)
... +++++.++- -|++.|++.+++.. .+.+ +|++.+ -++.|.+.+ +++|.++|+++|+++|+
T Consensus 219 ls~~~~~a~~~~f~H-------ND~~~Le~~L~~~~---~~~~-~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiV 284 (476)
T PLN02955 219 LAERQGNVEVFVYRH-------CDMYHLNSLLSSCK---MKRK-VVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVI 284 (476)
T ss_pred hccccCCceEEEeCC-------CCHHHHHHHHHhCC---CCce-EEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEE
Confidence 431 366666652 37899999886531 2334 455555 799999987 66677777899999999
Q ss_pred eccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc-cc--CC
Q 037587 228 DEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS-SF--GL 304 (464)
Q Consensus 228 Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~--~~ 304 (464)
||+|+.+.++..+ ....+... -..+..++++||||++|..| ||+++++ .+.+.++... .+ .+
T Consensus 285 DEAH~~Gv~G~~G---~G~~e~~g--------~~~di~ii~~TLsKA~G~~G---Gfi~gs~-~~~~~l~~~~~~~ifSt 349 (476)
T PLN02955 285 DDAHGTFVCGENG---GGVAEEFN--------CEADVDLCVGTLSKAAGCHG---GFIACSK-KWKQLIQSRGRSFIFST 349 (476)
T ss_pred cccccCceecCCC---CcHHHHhC--------CCCCCcEEEEeCccchhccC---ceeecHH-HHHHHHHHhCCCCeecc
Confidence 9999976665431 12222211 02367899999999998777 9999854 4556555432 22 22
Q ss_pred CChH-HHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHH
Q 037587 305 VSSQ-TQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKK 383 (464)
Q Consensus 305 ~s~~-~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ 383 (464)
..++ ...++.+.+... . ....+++.+.++.+++.+. .|+.+ .+ ..+.+.+... ....++.++
T Consensus 350 alpp~~aaa~laal~l~---~-~~~~~r~~L~~n~~~fr~~---~G~~~---~s-PI~pI~ig~~------~~a~~~~~~ 412 (476)
T PLN02955 350 AIPVPMAAAAYAAVVVA---R-KEKWRRKAIWERVKEFKAL---SGVDI---SS-PIISLVVGNQ------EKALKASRY 412 (476)
T ss_pred cccHHHHHHHHHHHHHH---h-cCHHHHHHHHHHHHHHHHh---cCCCC---CC-CEEEEEeCCH------HHHHHHHHH
Confidence 2222 222222222211 1 1123556677776767663 36553 22 3444554431 233456677
Q ss_pred HHHhcCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 384 IIFEVGLNISPGSSCHC-NEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
|+ ++||.+.+...... .+...+||+++. .++++++.+++.|.++....+
T Consensus 413 L~-~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 413 LL-KSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred HH-HCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 65 67999986654432 234579999977 799999999999988865443
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-19 Score=175.34 Aligned_cols=290 Identities=15% Similarity=0.170 Sum_probs=171.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..++++.+|++++ . ++.+++++|+. ++..++..+.++||.|++..-.|......++...+ ..+.++
T Consensus 58 ~~~~e~~la~~~~--------~-~~~l~~~sG~~-a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~-~~~~~~--- 123 (370)
T PRK05937 58 LDDLEHKIAHFHG--------A-PEAFIVPSGYM-ANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISG-WHQSFR--- 123 (370)
T ss_pred HHHHHHHHHHHhC--------C-CeEEEECChHH-HHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCC-ceEEec---
Confidence 5678888888875 2 34466677664 45455556667888888877777666666654423 333332
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~ 245 (464)
..|++.|++.++.....+++..+|++++++|++|.+.| +++|.++|+++|+++++||+|+...++.. ...
T Consensus 124 ----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~---g~g 193 (370)
T PRK05937 124 ----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDD---GKG 193 (370)
T ss_pred ----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCc
Confidence 24789999988753222234556778899999999987 66778888899999999999985434322 111
Q ss_pred hhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH-Hhccc---CCCChHHHHHHHHHcCCch
Q 037587 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT-KMSSF---GLVSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~-~~~~~---~~~s~~~q~~~~~~l~~~~ 321 (464)
. ...+ +..+..+++.||||.+|..|. | +++.++ +...+. ...++ ...+++...++.++++-
T Consensus 194 ~---~~~~------~~~~~~~~~~tlsK~~g~~G~--~-vl~~~~-~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~-- 258 (370)
T PRK05937 194 F---CHSL------GYENFYAVLVTYSKALGSMGA--A-LLSSSE-VKQDLMLNSPPLRYSTGLPPHLLISIQVAYDF-- 258 (370)
T ss_pred h---HHhh------CCCCCcEEEEechhhhhcCce--E-EEcCHH-HHHHHHHhCCCCeecCCCCHHHHHHHHHHHHH--
Confidence 1 1100 011223568999999997773 3 444333 333222 22222 12344444433333321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN 401 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~ 401 (464)
+.+..+..++.+++.++++.+.|...+. +....+.++.. . ..++.. .|.++||.+.... . .
T Consensus 259 -l~~~~~~~~~~l~~l~~~l~~~l~~~~~-------~~~~~i~~~~~------~-~~~~~~-~L~~~gi~v~~~~--~-~ 319 (370)
T PRK05937 259 -LSQEGELARKQLFRLKEYFAQKFSSAAP-------GCVQPIFLPGI------S-EQELYS-KLVETGIRVGVVC--F-P 319 (370)
T ss_pred -HHhCcHHHHHHHHHHHHHHHHhcCCCCC-------CCEEEEEeCCh------h-HHHHHH-HHHHCCeeEEeeC--C-C
Confidence 1111223345566666667766643211 11112233311 1 123444 4567899887322 1 2
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 402 EPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 402 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..+++|++++. .++++++.+++.|++++++.+
T Consensus 320 ~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~ 352 (370)
T PRK05937 320 TGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQ 352 (370)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 34689999976 789999999999999998876
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-19 Score=160.48 Aligned_cols=356 Identities=13% Similarity=0.198 Sum_probs=241.6
Q ss_pred CCCCCCCCCceEEeecccc------cccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHc
Q 037587 28 PYDQLHNPSGIIQMGLAEN------QLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIR 101 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~ 101 (464)
.|..+..|.. ++|+++.- |+..|.+++.-....+. -...+.|-|.-|.+.++++.++.+-
T Consensus 23 ~y~~d~~p~K-vnL~igAYRtd~g~PWvLPvVk~~e~~i~~d----------~s~NHEYLpi~Gl~~F~~~A~el~l--- 88 (410)
T KOG1412|consen 23 SYGEDLDPVK-VNLGIGAYRTDDGKPWVLPVVKKAEKKIAND----------QSLNHEYLPILGLPTFTKAATELLL--- 88 (410)
T ss_pred HhcccCCcce-eecccceEEcCCCCeeEehhhhhhhhhccCc----------hhccchhccccCchhhhhhhHHHhc---
Confidence 4666555555 77887622 23345555543332111 1224568888999999999998762
Q ss_pred CCCCC-CCCCcEE--EeCChHHHHHHHHHH---hcCCCCeEEEcCCCCCChhhhcccCCC-cEEEEEecCCCCCcccCHH
Q 037587 102 GNKVK-FDPNKLV--LTAGSTAANETLMFC---LADPGDAFLLPTPYYPGFDRDLKWRPG-VEIVPIHCSSSNGFRITIS 174 (464)
Q Consensus 102 ~~~~~-~~~~~i~--it~G~~~al~~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~~~~g-~~~~~v~~~~~~~~~~d~~ 174 (464)
|...+ +..+.+. -+-+++.++.....- ++ +...|.+..|+|..+...+... | ..+..++.-..+.-.+|++
T Consensus 89 g~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~-~~~~VY~SnPTW~nH~~if~~a-Gf~tv~~Y~yWd~~~k~~d~e 166 (410)
T KOG1412|consen 89 GADSPAIKEDRVFGVQSLSGTGALRIAADFLATFY-NKNTVYVSNPTWENHHAIFEKA-GFTTVATYPYWDAENKCVDLE 166 (410)
T ss_pred CCCchhhhhccccceeeccccchhhhhHHHHHHhc-ccceeEecCCchhHHHHHHHHc-CCceeeeeeeecCCCceecHH
Confidence 11111 2223321 234455555554433 33 3567999999999998888877 8 4566666544455678999
Q ss_pred HHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhcc
Q 037587 175 ALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDR 253 (464)
Q Consensus 175 ~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~ 253 (464)
.+.+.|+.+ +.-..+++... |||||.-.+.|++..|++..++.+.+.+.|-+|.++.-++.....+.+...+.
T Consensus 167 ~~Lsdl~~A----Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~-- 240 (410)
T KOG1412|consen 167 GFLSDLESA----PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVE-- 240 (410)
T ss_pred HHHHHHhhC----CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHh--
Confidence 999988763 22233344444 99999999999999999999999999999999998654443223344444444
Q ss_pred CcCCCCCCCCcEEEEcCCCcCCCCCccEEEEE--EecCHHHHHHHHH------hcccCCCChHHHHHHHHHcCCchhhHH
Q 037587 254 NIDESDDLWSRIHIVYSLSKDFSMPGFRVGMI--YSNNERVVSAATK------MSSFGLVSSQTQYLLSRMLSDKKFTCN 325 (464)
Q Consensus 254 ~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l--~~~~~~~~~~~~~------~~~~~~~s~~~q~~~~~~l~~~~~~~~ 325 (464)
....++++.||+|.||+.+-|+|-+ +..++..+..+.. +..+.+++.....++...|..+++.++
T Consensus 241 -------~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~ 313 (410)
T KOG1412|consen 241 -------QGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQ 313 (410)
T ss_pred -------cCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHH
Confidence 2256889999999999999999987 3445444333221 223444566777889999999987555
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 326 YMKE---NRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 326 ~~~~---~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
|... +..++++.|..|++.|..++ |.-...+.|||-+-.|.. .....|.+++.|++.+
T Consensus 314 W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp-----------~qV~~li~~h~vyLl~---- 378 (410)
T KOG1412|consen 314 WIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTP-----------AQVDHLIENHKVYLLS---- 378 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCH-----------HHHHHHHHhceEEEec----
Confidence 5544 34567778888888887774 444456889998777653 2467788889999874
Q ss_pred CCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 399 HCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 399 ~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+| ||+++.++...++...++|.+.++..+
T Consensus 379 ----~G--RInisGLN~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 379 ----DG--RINISGLNMKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred ----CC--cEeeeccccccHHHHHHHHHHHHHhhc
Confidence 34 899988888889999999999887765
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-19 Score=180.14 Aligned_cols=316 Identities=16% Similarity=0.141 Sum_probs=199.6
Q ss_pred ccccC---CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHH--HH-HhcCCCC----eEEEcCCCCCC
Q 037587 76 ELALF---QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETL--MF-CLADPGD----AFLLPTPYYPG 145 (464)
Q Consensus 76 ~~~~Y---~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~--~~-~l~~~gd----~Vlv~~p~y~~ 145 (464)
..+.| ....|..+++.++.+++.+.+| ++...+..++|+++.+..+ ++ .+.++|| +|++++|+|+.
T Consensus 98 ~~tpYq~e~~sqG~lel~~~~~~~la~l~G----~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~ 173 (481)
T PRK04366 98 ELHPLQPEETVQGALELMYELQEWLKEITG----MDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGT 173 (481)
T ss_pred cCCCCCChhhhhHHHHHHHHHHHHHHHHhC----CCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHh
Confidence 34556 3456888999999999998877 4555666677777666543 22 3456776 99999999999
Q ss_pred hhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEE
Q 037587 146 FDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHI 225 (464)
Q Consensus 146 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~l 225 (464)
+...+... |++++.++++ .++.+|++.|++.+.+ ++++|++++|| |||.. ..++++|+++|+++|+++
T Consensus 174 ~~~~~~~~-G~~vv~v~~~--~~~~~D~e~L~~~i~~------~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~gal~ 241 (481)
T PRK04366 174 NPASAAMA-GFKVVEIPSN--EDGLVDLEALKAAVGE------DTAALMLTNPN-TLGLF--ERNILEIAEIVHEAGGLL 241 (481)
T ss_pred HHHHHHHc-CCEEEEeecC--CCCCcCHHHHHhhccc------CCeEEEEeCCC-Ccccc--chHHHHHHHHHHHcCCEE
Confidence 98888766 9999999985 3578999999988864 78899999997 99964 357999999999999999
Q ss_pred EEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC----ccEEEEEEecCHHHHHHHHHh--
Q 037587 226 VSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP----GFRVGMIYSNNERVVSAATKM-- 299 (464)
Q Consensus 226 I~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~----GlRiG~l~~~~~~~~~~~~~~-- 299 (464)
++|.++.....+ . .+.. ..+..++++|.+|.||.| |-.+|++.++++ +.+.+...
T Consensus 242 iVD~a~~~~~~g-~----~~~~-------------~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~-~~~~lp~~~v 302 (481)
T PRK04366 242 YYDGANLNAILG-K----ARPG-------------DMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE-LAPFLPVPVV 302 (481)
T ss_pred EEEecChhhhcc-c----CCcc-------------ccCCCEEEEechhhcCCCCCCCCCCeeeeeehhh-hHhhCCCCee
Confidence 999998522111 1 1111 225668889999998744 455788887543 32222100
Q ss_pred ----ccc---------------CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccE
Q 037587 300 ----SSF---------------GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGL 359 (464)
Q Consensus 300 ----~~~---------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~ 359 (464)
..+ ++.+.....++..++.... .+-+++..++...+.+++.+.|.+. .+.+..+...-
T Consensus 303 ~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G--~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 380 (481)
T PRK04366 303 EKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG--AEGLREVSEDAVLNANYLKARLKDIYDLPYDRPCMHE 380 (481)
T ss_pred eccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHhhCcccCCCCeeEE
Confidence 000 0001111122222222211 2334444455556677888888775 33221111111
Q ss_pred EEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 360 FCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 360 f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+.++++.. .... ....++.++|. ++||.+. +..+.....+.+|++++. .++++++.+++.|+++.++..
T Consensus 381 -~~~~~~~~-~~~g-~~~~~v~~~L~-~~Gi~~~-~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~ 450 (481)
T PRK04366 381 -FVLSGKKL-KETG-VRTLDIAKRLL-DYGFHPP-TIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK 450 (481)
T ss_pred -EEEECccc-cccC-CCHHHHHHHHH-HCCccCC-ccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22333311 1111 12235666665 6799865 222322235689999976 689999999999999877665
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-19 Score=173.79 Aligned_cols=215 Identities=14% Similarity=0.121 Sum_probs=154.8
Q ss_pred cCCCCC--CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----cc
Q 037587 79 LFQDYH--GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KW 152 (464)
Q Consensus 79 ~Y~~~~--g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~ 152 (464)
.|.... ....|+++||++.+ .+++++++|+++++..++.+++++||+|++++|.|+++...+ ..
T Consensus 54 ~Y~r~~npt~~~Le~~iA~le~----------~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~ 123 (394)
T PRK09028 54 FYGRRGTPTHFAFQAAIVELEG----------GAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKG 123 (394)
T ss_pred eecCCCCchHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhh
Confidence 465432 34699999998853 246899999999999999999999999999999998776532 33
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |+++..++.. +.+.+++.+.+ ++++|++++|+||||.+ .++++|+++|+++|+++|+|++|+
T Consensus 124 ~-Gi~v~~v~~~-------~~e~l~~~l~~------~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 124 F-GIETTYYDPM-------IGEGIRELIRP------NTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred c-ceEEEEECCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCcc
Confidence 4 8888766532 34667777653 79999999999999887 679999999999999999999997
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHHHHh-ccc-CCCChHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAATKM-SSF-GLVSSQT 309 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~~~-~~~-~~~s~~~ 309 (464)
.. +.-. + + ..+..+++.|.+|.+ |..++..|+++. ++.+.+.+... ... ..+++..
T Consensus 187 ~p-~~~~-----P---l-----------~~GaDivv~S~tK~l~Gh~d~~~G~~~~-~~~~~~~l~~~~~~~G~~~~p~~ 245 (394)
T PRK09028 187 SP-INSR-----P---F-----------EMGVDISIQAATKYIVGHSDVMLGTATA-NEKHWDQLREHSYLMGQCTSPDD 245 (394)
T ss_pred cc-ccCC-----c---c-----------ccCceEEEEeCCeEecCCCCEEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHH
Confidence 42 1111 1 1 125678999999999 555688898776 44443333322 112 2356666
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 310 QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
...+..-|+. +.-+.++..++...+.+.|+++
T Consensus 246 a~l~~rgl~T-------L~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 246 VYLAMRGLRT-------LGVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred HHHHHcccCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 6655555544 4445566667778888889887
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-19 Score=174.81 Aligned_cols=216 Identities=19% Similarity=0.171 Sum_probs=148.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc---ccCC
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL---KWRP 154 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~---~~~~ 154 (464)
.+|..+ ...+|++.+|++++ .+++++++|+++++..++.+++++||.|+++.|+|..+...+ ...
T Consensus 48 ~r~~np-~~~~lE~~lA~l~g----------~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~- 115 (385)
T PRK08574 48 SREENP-TLRPLEEALAKLEG----------GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKF- 115 (385)
T ss_pred ECCCCc-cHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhcc-
Confidence 344433 46889999999985 346788899999999999999999999999999999876554 333
Q ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 155 GVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 155 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
|+++..+. +|++.+++.+.+ .++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+..
T Consensus 116 g~~v~~~~--------~d~~~l~~~i~~-----~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~ 179 (385)
T PRK08574 116 GVKVVLAY--------PSTEDIIEAIKE-----GRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATP 179 (385)
T ss_pred CcEEEEEC--------CCHHHHHHhcCc-----cCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence 77776553 357888877642 16899999999999999987 567888899999999999999632
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccE-EEEEEecCHHHHHHHHHhcc-cC-CCChHHHH
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR-VGMIYSNNERVVSAATKMSS-FG-LVSSQTQY 311 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlR-iG~l~~~~~~~~~~~~~~~~-~~-~~s~~~q~ 311 (464)
+... .+ .. +..+++.|+||.++.+|-. .|++++.++.+.+.+..... ++ .++++...
T Consensus 180 -~~~~-----~l-~~-------------GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~ 239 (385)
T PRK08574 180 -LLYR-----PL-RH-------------GADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAY 239 (385)
T ss_pred -ccCC-----hh-hh-------------CCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 1111 11 11 4568899999999756655 47677656666555443332 22 24444343
Q ss_pred HHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 312 LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.+..-++. +..+.++..+....+.+.|+++
T Consensus 240 l~l~~l~t-------L~~R~~~~~~na~~la~~L~~~ 269 (385)
T PRK08574 240 LVLRGLKT-------LEVRFERQCRNAMAIAEFLSEH 269 (385)
T ss_pred HHHcccCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 33333332 3333444455666777777765
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=173.23 Aligned_cols=336 Identities=13% Similarity=0.107 Sum_probs=203.1
Q ss_pred CCCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+. .|.+.+++.+..+ ....... ....+....+++.+.+..
T Consensus 27 ~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~-------------~~~~~~~-~~~~~~~~~la~~L~~~~-- 90 (397)
T TIGR03246 27 SRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQAD-------------KLWHIGN-GYTNEPVLRLAKKLVDAT-- 90 (397)
T ss_pred CEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHH-------------hcccccC-ccCCHHHHHHHHHHHhhC--
Confidence 34444556788999765 34443 4666666665422 1111111 111344455555554332
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc-------C-CCCeEEEcCCCCCChhhhcccCCCcE------------EEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA-------D-PGDAFLLPTPYYPGFDRDLKWRPGVE------------IVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~-------~-~gd~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v~~ 163 (464)
..+.+++++++++++..+++... . ....|+..+-+|++.........+.. +..++.
T Consensus 91 ----~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (397)
T TIGR03246 91 ----FADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY 166 (397)
T ss_pred ----CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC
Confidence 24689999999999999998751 1 23567877777776543221111211 112221
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.|++.+++.+.+ ++++|++..++++.|... +.+.+++|.++|++||+++|.||+|.++...+. .
T Consensus 167 -------~d~~~l~~~l~~------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~--~ 231 (397)
T TIGR03246 167 -------NDLAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE--L 231 (397)
T ss_pred -------CCHHHHHHHhcc------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc--c
Confidence 278888888753 677777764455556543 789999999999999999999999976422222 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~ 320 (464)
...... +...-+.|+||.+| .|+|+||++++ +.+.+.+.... ..+..+++++.++.+.++..
T Consensus 232 -~a~~~~-------------gv~pDi~t~~K~lg-gG~pigav~~~-~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~ 295 (397)
T TIGR03246 232 -YAYMHY-------------GVTPDILTSAKALG-GGFPIGAMLTT-TEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLV 295 (397)
T ss_pred -hhhhhc-------------CCCCCEEEeehhhh-CCcceeEEEEc-HHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHH
Confidence 111111 11111338999998 89999999995 44555543321 11235677777777766532
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCC----C-eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAG----I-RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPG 395 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g----~-~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg 395 (464)
+ .....+.++++.+++.+.|++++ + ...++. |.++.+.+..... .....++..++ ++||.+.+.
T Consensus 296 ~-----~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~----~~~~~~~~~l~-~~Gv~~~~~ 364 (397)
T TIGR03246 296 N-----TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGK-GLLIGAVLTEAYQ----GKAKQFVNAAA-EEGVIALIA 364 (397)
T ss_pred h-----hccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecC-ceEEEEEEcCchh----hHHHHHHHHHH-HCCeEEeec
Confidence 1 12345566667777777776653 1 122233 4566666542110 12335666665 679998763
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 396 SSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 396 ~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+++++|++++. .+++++++++++|.+++++
T Consensus 365 ------g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 365 ------GPNVVRFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred ------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 24689997765 7999999999999998865
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-18 Score=174.45 Aligned_cols=360 Identities=13% Similarity=0.085 Sum_probs=204.0
Q ss_pred CCCCCCCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 27 NPYDQLHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 27 ~~y~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
..|..+.....+||+..+- ..+ ..|.+.+++.++.+. ...........+....+|+.+.+...
T Consensus 45 G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~-------------~~~~~~~~~~~~~~~~la~~L~~~~p 111 (451)
T PRK06918 45 GALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQ-------------YIHTGFNVMMYEPYIELAEKLAALAP 111 (451)
T ss_pred ccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHh-------------ccCccccccccHHHHHHHHHHHHhCC
Confidence 3455555667789987652 233 346677777664321 11111111123555666666654321
Q ss_pred CCCCCCC-CcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc-------------EEEEEecCCC
Q 037587 103 NKVKFDP-NKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV-------------EIVPIHCSSS 166 (464)
Q Consensus 103 ~~~~~~~-~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~-------------~~~~v~~~~~ 166 (464)
... +.++++++++|++..+++... ....+|+....+|++....+....+. .+..+|....
T Consensus 112 ----~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (451)
T PRK06918 112 ----GSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYE 187 (451)
T ss_pred ----CCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCcc
Confidence 112 589999999999999988642 23357888888887765332211110 1222222100
Q ss_pred --CCcccC--------HHHHHHHHHHHhhcCCceEEEEEeCCCCCC-CCCCC-HHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 167 --NGFRIT--------ISALENAYQQAQTLNLKVKGVLITNPSNPL-GTAMT-HQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 167 --~~~~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P~NPt-G~~~s-~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
...... ++.+++.+.+. ....++. .++..|-... |.+++ .+.+++|.++|+++|+++|+||+|.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iA-avi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~ 265 (451)
T PRK06918 188 YRRPEGLTEEQYDDFMIEEFKNFFISE-VAPETIA-AVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGF 265 (451)
T ss_pred ccccccCchHHHHHHHHHHHHHHHHhh-cCCCceE-EEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 000111 11233322111 0122454 4555675544 66555 455999999999999999999999986
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHH
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYL 312 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~ 312 (464)
.+.+. +.+...+ . ..+. +.||||.++ +|+|+||+++++ .+.+.+.... ..+..++++|.+
T Consensus 266 gr~g~---~~a~~~~-~---------v~pD---i~t~sK~l~-~G~pig~v~~~~-~i~~~~~~~~~~~T~~g~~l~~aa 327 (451)
T PRK06918 266 ARTGK---YFAIEHF-D---------VVPD---LITVSKSLG-AGVPISGVIGRK-EIMDESAPGELGGTYAGSPLGCAA 327 (451)
T ss_pred CccCc---eehhHhc-C---------CCCC---EEeeehhhc-CCCccEEEEEcH-HHHhccCCCCcCcCCCcCHHHHHH
Confidence 54433 1222222 1 1122 449999999 999999999954 4444443221 223467788888
Q ss_pred HHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCcc-cccCChhHHHHHHHHHHHh
Q 037587 313 LSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHL-LVSNTFEAEKELWKKIIFE 387 (464)
Q Consensus 313 ~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~-~~~~~~~~~~~l~~~ll~~ 387 (464)
+.++++ ++.+ .++.+...+.+.++.+.+.+ +++ +....+.|+++.|...... ...++......+...+ .+
T Consensus 328 a~a~l~~i~~~~~-~~~~~~~g~~l~~~l~~l~~---~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 402 (451)
T PRK06918 328 ALAVLDIIEKENL-NDRAIELGKVVMNRFEEMKN---KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEA-NK 402 (451)
T ss_pred HHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHh---hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHH-HH
Confidence 665554 3333 44555555555544433332 232 2224456776666554211 0111112223344444 46
Q ss_pred cCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 388 VGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 388 ~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+||.+.|+..|+ +++||+++. ++++++++++++|.+++++.
T Consensus 403 ~Gvlv~~~~~~~----~~lrl~p~l~~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 403 RGLLLLSAGTYG----NVIRVLMPLVITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred CCeEEeecCCCC----CEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 899999986663 589999976 78999999999999999765
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-19 Score=178.56 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=129.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hccc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~ 152 (464)
..+|+.+. ..+|++.+|++++ .+..++++++++++..++.+++++||+|+++.+.|++... .+..
T Consensus 51 ysr~~~p~-~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~ 119 (418)
T TIGR01326 51 YSRLMNPT-TDVLEQRIAALEG----------GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKR 119 (418)
T ss_pred eECCCChh-HHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHH
Confidence 34555432 4788888888875 2457889999999999999999999999999999975433 2344
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |++++.++.+ |++++++.+.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+
T Consensus 120 ~-G~~v~~v~~~-------d~~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~ 182 (418)
T TIGR01326 120 L-GIEVRFVDPD-------DPEEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFA 182 (418)
T ss_pred c-CcEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCc
Confidence 5 9999888742 68889888764 7899999999999999875 6778888999999999999997
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecC
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNN 289 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~ 289 (464)
.. +... + + ..+.++++.|+||.+|.+|+|+||+++++
T Consensus 183 ~~-~~~~-----~---l-----------~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 183 TP-YLCR-----P---I-----------DHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred hh-hcCC-----c---h-----------hcCCeEEEECccccccCCccceEEEEEec
Confidence 32 1111 1 1 11567899999999998999999998854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=166.04 Aligned_cols=351 Identities=15% Similarity=0.223 Sum_probs=242.6
Q ss_pred CCCCCCCCceEEeecccc------cccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 29 YDQLHNPSGIIQMGLAEN------QLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
|..+.+|.. |+|+++.. |+..+-++++-++... ......|-|..|.+++.+..+++.- |
T Consensus 46 fk~D~n~~K-iNLgvGaYRdd~gKp~vL~~VrkAE~ql~~-----------~~ldKEYlpI~Gl~eF~k~sakLa~---G 110 (427)
T KOG1411|consen 46 FKKDPNPKK-INLGVGAYRDDNGKPYVLPSVRKAEQQLAS-----------LSLDKEYLPITGLAEFNKLSAKLAL---G 110 (427)
T ss_pred HhcCCCcce-eeecccceecCCCCeeeeHHHHHHHHHHhh-----------hcccchhccccchHHHHHHHHHHhh---c
Confidence 566666665 89998733 3345666666555321 1233479999999999999999852 2
Q ss_pred CCCC-CCCCcEEE--eCChHHHHHHHHHH--hcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHH
Q 037587 103 NKVK-FDPNKLVL--TAGSTAANETLMFC--LADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALE 177 (464)
Q Consensus 103 ~~~~-~~~~~i~i--t~G~~~al~~~~~~--l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 177 (464)
...+ +....|+. +-++|.++.....- ..-++..|.+|+|+|......+... |+.+..+..-....-.+|.+.+.
T Consensus 111 ~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~a-g~~~~~yrYyd~~t~gld~~g~l 189 (427)
T KOG1411|consen 111 DNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDA-GLPVKFYRYYDPKTRGLDFKGML 189 (427)
T ss_pred CCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCcccccc-CcceeeeeeccccccccchHHHH
Confidence 2111 22334433 23445555544332 2347889999999999999888877 99887777544445678888888
Q ss_pred HHHHHHhhcCCceEEEEEeCC--CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCc
Q 037587 178 NAYQQAQTLNLKVKGVLITNP--SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNI 255 (464)
Q Consensus 178 ~~i~~~~~~~~~~~~vil~~P--~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~ 255 (464)
+.+.++ ....+++.+. |||||.-.+.+++++|.++.++.+.+-+.|-+|.++.-+.......++.-++.
T Consensus 190 edl~~~-----p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~---- 260 (427)
T KOG1411|consen 190 EDLGEA-----PEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVE---- 260 (427)
T ss_pred HHHhcC-----CCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHH----
Confidence 877663 2233555554 99999999999999999999999999999999998544332112233333343
Q ss_pred CCCCCCCCcEEEEcCCCcCCCCCccEEEEE--EecCHHHHHH----HHH-hccc-CCCChHHHHHHHHHcCCchhhHHHH
Q 037587 256 DESDDLWSRIHIVYSLSKDFSMPGFRVGMI--YSNNERVVSA----ATK-MSSF-GLVSSQTQYLLSRMLSDKKFTCNYM 327 (464)
Q Consensus 256 ~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l--~~~~~~~~~~----~~~-~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~ 327 (464)
...++++..||+|.+|+-|-|+|.+ ++.+.+.... ++. .+++ .+++.....++..+|.+++...+|.
T Consensus 261 -----~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~ 335 (427)
T KOG1411|consen 261 -----DGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWL 335 (427)
T ss_pred -----cCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHH
Confidence 3367888899999999999999987 5554443332 222 2333 3344456778888999987766666
Q ss_pred HH---HHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 328 KE---NRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 328 ~~---~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
.+ +.+++...|..|.+.|+..| |..+..+-|||.+-.+.+ +....|.+++.|++.
T Consensus 336 ~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~p-----------eQv~~l~ke~~iYmT------- 397 (427)
T KOG1411|consen 336 GEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNP-----------EQVDWLTKEYHIYLT------- 397 (427)
T ss_pred HHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCH-----------HHHHHHHhhheeeec-------
Confidence 55 45677778888888888764 444566789999877763 356778889889875
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.+| |||++.++...+..+.++|.++.+
T Consensus 398 -~dG--RiS~aG~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 398 -KDG--RISMAGLSSSNVPYLADAIHAVTK 424 (427)
T ss_pred -cCc--eEeeccccccCCcccchhhHhHhc
Confidence 244 999988888888888888877654
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=180.85 Aligned_cols=279 Identities=18% Similarity=0.231 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCCCChhhh---cccCCCcEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL----ADPGDAFLLPTPYYPGFDRD---LKWRPGVEIV 159 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~~~~---~~~~~g~~~~ 159 (464)
.++|+.++++++ +++++|++|+|+++++..++..+ .++||+|++....|+.+... +... |++++
T Consensus 46 ~~~r~~la~~~g--------~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~-g~~v~ 116 (364)
T PLN02651 46 EKARAQVAALIG--------ADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQE-GFEVT 116 (364)
T ss_pred HHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhc-CCEEE
Confidence 456667777664 67889999999999988877654 47899999998777654332 3334 89999
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 160 PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 160 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
.++.+. ++.+|++++++.+++ +++++++++++||||.+.+ +++|.++|+++|+++++|.+++. +..
T Consensus 117 ~v~~~~--~~~~d~~~l~~~i~~------~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~---g~~ 182 (364)
T PLN02651 117 YLPVKS--DGLVDLDELAAAIRP------DTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAV---GKI 182 (364)
T ss_pred EEccCC--CCcCCHHHHHHhcCC------CcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhh---CCc
Confidence 998763 457899999998864 7899999999999999976 66788889999999999999973 222
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--------cccCCCChHHHH
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--------SSFGLVSSQTQY 311 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--------~~~~~~s~~~q~ 311 (464)
+ .++. ..+..+++.|.+|.+|.+| +|+++.+++......... ...++.+.....
T Consensus 183 --~-~~~~-------------~~~~D~~~~s~hK~~gp~G--~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~ 244 (364)
T PLN02651 183 --P-VDVD-------------DLGVDLMSISGHKIYGPKG--VGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVV 244 (364)
T ss_pred --c-cCcc-------------cCCCCEEEechhhhCCCCc--eEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHH
Confidence 1 1211 2245678899999755334 898887554222110000 112334444445
Q ss_pred HHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeecCCc-----cEEEEEecCcccccCChhHHHHHHHHH
Q 037587 312 LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV-A-GIRCLKSNA-----GLFCWVDMRHLLVSNTFEAEKELWKKI 384 (464)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~~-----g~f~~~~l~~~~~~~~~~~~~~l~~~l 384 (464)
++.++++.- .+..+..+++.++..+++.+.|++ . |++++.+.. ...+.+.++. . . ..++...|
T Consensus 245 ~l~~al~~~---~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~-~-----~-~~~~~~~L 314 (364)
T PLN02651 245 GLGAACELA---MKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY-V-----E-GESLLMGL 314 (364)
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCC-C-----C-HHHHHHHh
Confidence 555554321 223455667777788888888875 3 777775411 1144444442 1 1 22455555
Q ss_pred HHhcCeEEeCCCCCCCC-----------------CCCeEEEEeec-CCHHHHH
Q 037587 385 IFEVGLNISPGSSCHCN-----------------EPGWFRICFAN-ITEETLQ 419 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~~-----------------~~~~~Ris~~~-~~~e~l~ 419 (464)
.+ |.++.|+.|... ..+.+|+|++. .|++|++
T Consensus 315 -~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 315 -KE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred -CC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 33 999988866543 13689999988 6777763
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=178.24 Aligned_cols=167 Identities=17% Similarity=0.267 Sum_probs=130.4
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~ 164 (464)
-..++++.+|++++ . .+.+++++|+++++..++.+++++||+|+++.|+|......+... |++++.++.+
T Consensus 60 ~i~~~~~~~A~~~g--------a-~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~-g~~~~~v~~~ 129 (294)
T cd00615 60 PIKEAQELAARAFG--------A-KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLS-GAVPVYLKPE 129 (294)
T ss_pred HHHHHHHHHHHHhC--------C-CCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHC-CCEEEEecCc
Confidence 36788899999886 2 344556999999999999999999999999999998888777766 9999988876
Q ss_pred CCCCc----ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc-ccCCC
Q 037587 165 SSNGF----RITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT-VFDSP 239 (464)
Q Consensus 165 ~~~~~----~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~-~~~~~ 239 (464)
.+.+| .+|++.+++.+++ ++++++|++++| ||+|.+++ +++|+++|+++|+++|+||+|+.. .|.+.
T Consensus 130 ~~~~~~~~~~i~~~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~ 201 (294)
T cd00615 130 RNPYYGIAGGIPPETFKKALIE----HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPI 201 (294)
T ss_pred cCcccCcCCCCCHHHHHHHHHh----CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcc
Confidence 44433 6899999998864 347899999999 79999986 678899999999999999999743 23222
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEE
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIY 286 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~ 286 (464)
...+.. ..+.++++.|++|++ +|++.|+++
T Consensus 202 --~~~~~~-------------~~~~div~~S~hK~l--~g~~~~~~l 231 (294)
T cd00615 202 --LPSSAA-------------MAGADIVVQSTHKTL--PALTQGSMI 231 (294)
T ss_pred --cCcchh-------------hcCCcEEEEchhccc--chHhHHHHH
Confidence 111111 226788999999986 777776554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=172.13 Aligned_cols=343 Identities=14% Similarity=0.088 Sum_probs=205.6
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+. ...++.. -..+....+++.+.....
T Consensus 33 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~-------------~~~~~~~-~~~~~~~~la~~L~~~~~-- 96 (408)
T PRK04612 33 RVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGK-------------LWHTSNV-FYSAPPLKLAEELVTASR-- 96 (408)
T ss_pred EEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHh-------------ccccccc-cCCHHHHHHHHHHHhhCC--
Confidence 4445566778998755 3333 346666666664321 1111111 123445566666653211
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC----C----C-CeEEEcCCCCCChhhhcccCCCcEEEE---EecCCC---CCc
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD----P----G-DAFLLPTPYYPGFDRDLKWRPGVEIVP---IHCSSS---NGF 169 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~----~----g-d~Vlv~~p~y~~~~~~~~~~~g~~~~~---v~~~~~---~~~ 169 (464)
..+.++++++++|++..+++.... . + .+|+....+|++....+....|..... -++.+. -.|
T Consensus 97 ---~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (408)
T PRK04612 97 ---FAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF 173 (408)
T ss_pred ---CCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC
Confidence 126899999999999999876431 1 2 468998988887643322111211100 000000 011
Q ss_pred ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCC--HHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchh
Q 037587 170 RITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMT--HQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIM 247 (464)
Q Consensus 170 ~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s--~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~ 247 (464)
.|++.+++.+.. +..++++..|.+++|.+++ .+.+++|.++|+++|+++|+||+|.++...+. . ..
T Consensus 174 -~d~~~l~~~~~~------~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~-~a-- 241 (408)
T PRK04612 174 -NDVEALEAAMAG------GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT--L-FA-- 241 (408)
T ss_pred -CCHHHHHHhhCC------CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--h-hh--
Confidence 267888877642 3445677789888887766 56899999999999999999999987433222 1 11
Q ss_pred hhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCCchhhHH
Q 037587 248 EAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSDKKFTCN 325 (464)
Q Consensus 248 ~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~ 325 (464)
.. ..+.+..+.||||.+| +|+|+||++++++ +.+.+... ...+..+++.+.++.+.|+.-+-
T Consensus 242 ~~-----------~~~~~pdi~t~~K~l~-~G~piga~~~~~~-~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~--- 305 (408)
T PRK04612 242 HW-----------QEQVTPDIVTLAKALG-GGFPIGAMLAGPK-VAETMQFGAHGTTFGGNPLAAAVARVALRKLAS--- 305 (408)
T ss_pred hh-----------hcCCCCCEEEEcchhc-CCCceEEEEECHH-HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh---
Confidence 11 1144566789999999 9999999998544 44444322 12234677888888777753211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CCe-eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 326 YMKENRKRLRKRKEMLVSGLKVA----GIR-CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~~----g~~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
....+.++++-+++.+.|+++ ++. ...+. |+++.+.+..... ....+++..+ .++||++.|.
T Consensus 306 --~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~-Gl~~~i~~~~~~~----~~a~~i~~~l-~~~Gvlv~~~----- 372 (408)
T PRK04612 306 --PQIAANVARQSAALRAGLEALNAEFGVFAQVRGR-GLMLGAVLAPAHA----GQAGAILDLA-AEHGLLLLQA----- 372 (408)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecc-ceEEEEEecCchh----hHHHHHHHHH-HHCCeEEeeC-----
Confidence 122333344444444444443 322 22333 5677777742100 1122355554 5789999763
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 401 NEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 401 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+.+.+|+.... ++++++++++++|++++.+.
T Consensus 373 -g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~ 404 (408)
T PRK04612 373 -GPDVLRFVPALNLTDAELADGLARLRLALADY 404 (408)
T ss_pred -CCCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 24679999866 79999999999999998753
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-18 Score=169.91 Aligned_cols=355 Identities=9% Similarity=0.066 Sum_probs=204.0
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ...+.......+....+|+.+.+....
T Consensus 33 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~-------------~~~~~~~~~~~~~~~~la~~l~~~~p~- 98 (421)
T PRK09792 33 TLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQ-------------FTHTAYQIVPYESYVTLAEKINALAPV- 98 (421)
T ss_pred EEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHh-------------ccCcccCccCCHHHHHHHHHHHHhCCC-
Confidence 4444556778898654 2333 346666666664321 111111011234445566655432110
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc-------------EEEEEecCCCCCc
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV-------------EIVPIHCSSSNGF 169 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~-------------~~~~v~~~~~~~~ 169 (464)
...+.++++++++|++..+++... ....+|+....+|++....+....|. .++.+|..... .
T Consensus 99 --~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~ 175 (421)
T PRK09792 99 --SGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-H 175 (421)
T ss_pred --CCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-c
Confidence 112589999999999999988643 22357888888887754221111010 12222322111 0
Q ss_pred cc----CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 170 RI----TISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 170 ~~----d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
.+ +++.+++.+++. ....++++|++.-.++|+|..+ |.+.+++|.++|+++|+++|+||++.++.+.+. . .
T Consensus 176 ~~~~~~~~~~l~~~~~~~-~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~--~-~ 251 (421)
T PRK09792 176 GISTQDSLDAIERLFKSD-IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK--L-F 251 (421)
T ss_pred cccHHHHHHHHHHHHHhc-cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc--h-h
Confidence 11 235666655421 0124677766654489999866 899999999999999999999999998644333 1 2
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHH---cCC
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRM---LSD 319 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~---l~~ 319 (464)
....+ . ..++ +.||||.++ +|+|+||++++ +.+.+.+.. ....+..++++++++.+. +++
T Consensus 252 a~~~~-~--------~~pD----i~t~gK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~ 316 (421)
T PRK09792 252 AMDHY-A--------DKPD----LMTMAKSLA-GGMPLSGVVGN-ANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK 316 (421)
T ss_pred HHHhc-C--------CCCc----EEEeehhhc-CCCceEEEEEc-HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 22111 1 0112 579999998 99999999984 445443321 122234677888855544 444
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-hCCCeeecCCc-cEEEEEecCcccc-cCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKSNA-GLFCWVDMRHLLV-SNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~-g~f~~~~l~~~~~-~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
.++ +++.+ .+.++.....+.|. +++. +....| |+++|++++.... .........++..++ ++||.+.+..
T Consensus 317 ~~~----~~~~~-~~g~~l~~~l~~l~~~~p~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~~~g 389 (421)
T PRK09792 317 ESL----CERAN-QLGQRLKNTLIDAKESVPA-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRAL-AQGLLLLTCG 389 (421)
T ss_pred hhH----HHHHH-HHHHHHHHHHHHHHHhCCC-cceecccceEEEEEecCCccCCcchHHHHHHHHHHH-HCCcEEeecC
Confidence 333 33333 22222222233332 2343 233455 8999999974311 111122334666665 5799996432
Q ss_pred CCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 397 SCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 397 ~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
. ..+.+|+.++. ++++++++++++|.+++.
T Consensus 390 ~----~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 390 A----YGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred C----CCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 1 24689999887 899999999999999875
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=169.09 Aligned_cols=208 Identities=15% Similarity=0.122 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~ 162 (464)
..|++.+|++.+ .+++++++|+++++..++.+++++||.|++++|.|+..... .... |+++..++
T Consensus 53 ~~lE~~lA~l~g----------~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~-gi~v~~~d 121 (377)
T TIGR01324 53 FALQDAMCELEG----------GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRM-GVDITYYD 121 (377)
T ss_pred HHHHHHHHHHhC----------CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhc-CcEEEEEC
Confidence 588999998874 35789999999999999999999999999999999876543 2334 88877664
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.. +.+.+++.+++ ++|+|++.+|+||+|.. .++++|+++|+++|+++|+|++|+...+. .
T Consensus 122 ~~-------~~e~l~~~i~~------~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a~g~~~-~--- 181 (377)
T TIGR01324 122 PL-------IGEDIATLIQP------NTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWAAGLLF-K--- 181 (377)
T ss_pred CC-------CHHHHHHhcCC------CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCcccccc-C---
Confidence 32 22677776654 78999999999999887 67999999999999999999999843221 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhcccC-CCChHHHHHHHHHcCCc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSFG-LVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~~ 320 (464)
+ + ..+..++++|++|.+| .+++..|+++++++.+.........++ ..++.....+...++
T Consensus 182 --p---l-----------~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~-- 243 (377)
T TIGR01324 182 --P---L-----------EHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLR-- 243 (377)
T ss_pred --c---c-----------ccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhh--
Confidence 1 1 1255688999999995 345788999885543333222233333 234443333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.+..+.++..++...+.+.|+++
T Consensus 244 -----tl~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 244 -----TLGVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhC
Confidence 23444555566666788888776
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=172.70 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=123.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~~g~~~~~v 161 (464)
...|.+.+|++.+ .+..++++|+++++..++.+++++||+|+++.+.|++... .+... |++++.+
T Consensus 66 ~~~Le~~lA~leg----------~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~-Gv~v~~v 134 (431)
T PRK08248 66 TDVFEKRIAALEG----------GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKL-GITVKFV 134 (431)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhC-CEEEEEE
Confidence 4677777887764 3467889999999999999999999999999999976433 23445 9999988
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.. |++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+.. +..
T Consensus 135 d~~-------d~e~l~~ai~~------~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~-~~~--- 194 (431)
T PRK08248 135 DPS-------DPENFEAAITD------KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP-YLL--- 194 (431)
T ss_pred CCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc-ccC---
Confidence 752 78888888754 7899999999999999987 567888888999999999998621 111
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEec
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSN 288 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~ 288 (464)
.++ . .+..+++.|++|.+|.+|.++|++++.
T Consensus 195 --~pl-~-------------~gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 195 --RPI-E-------------HGADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred --Chh-H-------------cCCCEEEEcCccccCCCCCceEEEEEe
Confidence 111 1 256688999999999999999998763
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-18 Score=171.96 Aligned_cols=347 Identities=12% Similarity=0.088 Sum_probs=200.0
Q ss_pred CCCCCCCCceEEeecccc--cc--cHHHHHHHHHhhhhhHHhhhcccccccccc-cCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 29 YDQLHNPSGIIQMGLAEN--QL--SFDLLESWLASNQEAVELKRNGESLFRELA-LFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
|..+.+...+|||..+.- .+ ..|.+.+++.+..+. ..... .|. .....+|.+.+++++
T Consensus 68 ~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~----------~~~~~~~~~-~~~~~~la~~L~~~~------ 130 (474)
T PLN02624 68 RIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEK----------LTLSSRAFY-NDKFPEFAEYLTSMF------ 130 (474)
T ss_pred EEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh----------cCCcccccC-CHHHHHHHHHHHhhc------
Confidence 444445667889876521 22 346666666664321 01011 111 112244445555442
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC---------CCC-eEEEcCCCCCChhhhcccCCCcE------------EEEE
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD---------PGD-AFLLPTPYYPGFDRDLKWRPGVE------------IVPI 161 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v 161 (464)
..+.+++++++++++..+++.... ++. .|+...-+|.+....+....+-. +..+
T Consensus 131 ----~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~ 206 (474)
T PLN02624 131 ----GYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKV 206 (474)
T ss_pred ----CCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEe
Confidence 235899999999999999875432 122 57777777776532221111110 1112
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHH-HHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQE-LNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~-l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+. -|++.+++.++. .+.++.+|++..++|++|.++++++ +++|.++|++||+++|+||+|.++...+.
T Consensus 207 ~~-------~d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~- 275 (474)
T PLN02624 207 DF-------GDLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK- 275 (474)
T ss_pred CC-------CCHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcc-
Confidence 21 167888888753 2347888888888999999988775 99999999999999999999986433222
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcC
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLS 318 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~ 318 (464)
. ... .. .+ ..+. +.+|||.+|.+++++|++++++ .+...+..... .+..+++.+.++.+.|+
T Consensus 276 -~-~a~-~~-~~--------i~pD---iv~lsK~lggG~~pigav~~~~-~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe 339 (474)
T PLN02624 276 -M-LAC-DW-EE--------VRPD---VVILGKALGGGVIPVSAVLADK-DVMLCIKPGEHGSTFGGNPLASAVAMAALQ 339 (474)
T ss_pred -h-hhH-Hh-cC--------CCCC---EEEecccccCCCCcceeeeecH-HHHhHhccCCcCCCCCCCHHHHHHHHHHHH
Confidence 1 111 11 10 1122 3347999996669999999854 44443332221 12356777777777664
Q ss_pred Cc---hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCC
Q 037587 319 DK---KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPG 395 (464)
Q Consensus 319 ~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg 395 (464)
.. +. .++..++.+.++++.+.+...+.. .+....+.| .++.+.+..... ......+++..| .++||++.|+
T Consensus 340 ~l~~~~l-~~~~~~~~~~l~~~L~~l~~~~~~-~i~~vrg~G-~~~~i~l~~~~~--~~~~a~~~~~~L-~e~GV~v~p~ 413 (474)
T PLN02624 340 VVQDEKL-AERSAKLGQELRDQLQKIQKQFPK-LIKEVRGRG-LLNAVVLNSPKL--GPVSAYDVCLKL-KERGLLAKPT 413 (474)
T ss_pred HHHhchH-HHHHHHHHHHHHHHHHHHHHhCCC-ceEEEEeeE-EEEEEEecCCCc--ChHHHHHHHHHH-HhCCeEEecC
Confidence 21 11 222333333333332222222111 122233444 455555542110 012234566665 5789999876
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCcc
Q 037587 396 SSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNPQ 435 (464)
Q Consensus 396 ~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~ 435 (464)
. .+++||++.. ++++++++++++|++++++...+
T Consensus 414 ~------~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~~~ 448 (474)
T PLN02624 414 H------DTIIRLAPPLSISEDELQECSKALSDVLEHDLPK 448 (474)
T ss_pred C------CCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 5689999754 79999999999999998776643
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=170.01 Aligned_cols=208 Identities=17% Similarity=0.248 Sum_probs=143.3
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~~g~~~~~v 161 (464)
..+|++.+|++.+ . ...+++++| +.++..++ .++++||+|+++.|+|++... .+... |++++.+
T Consensus 52 ~~~Le~~lA~l~g--------~-~~~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~-G~~v~~v 119 (377)
T PRK07671 52 RAALEELIAVLEG--------G-HAGFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRF-GIEHTFV 119 (377)
T ss_pred HHHHHHHHHHHhC--------C-CceEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcC-CeEEEEE
Confidence 4788888888875 2 345666666 46777665 578999999999999985433 23334 8898888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+. .|++.+++++++ ++++|++++|+||||.+. ++++|.++|+++|+++|+|++|....+. .
T Consensus 120 ~~-------~d~~~l~~ai~~------~tklV~le~P~NPtg~~~---dl~~I~~la~~~g~~lvvD~a~~~~~~~-~-- 180 (377)
T PRK07671 120 DT-------SNLEEVEEAIRP------NTKAIYVETPTNPLLKIT---DIKKISTIAKEKGLLTIVDNTFMTPYWQ-S-- 180 (377)
T ss_pred CC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCCccccC-C--
Confidence 63 278889888754 789999999999999985 5777888888999999999999743222 2
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLS 318 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~ 318 (464)
+ ..+ +..+++.|+||.+|-++ .-.|++++.++.+.+.+...+.. ...++.....+..-++
T Consensus 181 ---p-~~~-------------g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~ 243 (377)
T PRK07671 181 ---P-ISL-------------GADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK 243 (377)
T ss_pred ---h-hhh-------------CCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC
Confidence 1 111 34588999999996332 45677777666666655554444 2244443333332222
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.+..+.++..++...+.+.|+++
T Consensus 244 -------tl~~R~~~~~~na~~la~~L~~~ 266 (377)
T PRK07671 244 -------TLGIRMEEHETNSRAIAEFLNNH 266 (377)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHcC
Confidence 24445666677888888888876
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-18 Score=168.82 Aligned_cols=288 Identities=16% Similarity=0.186 Sum_probs=182.2
Q ss_pred cCCCCCC--cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----ccc
Q 037587 79 LFQDYHG--FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKW 152 (464)
Q Consensus 79 ~Y~~~~g--~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~ 152 (464)
.|....+ ..+|++.++++++ . ++++++++++.++..++. ++++||.|+++.+.|...... +..
T Consensus 40 ~Y~r~~~p~~~~le~~la~l~g--------~--~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 108 (378)
T TIGR01329 40 DYTRSGNPTRTALESLLAKLDK--------A--DRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPR 108 (378)
T ss_pred ccCCCCChHHHHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHH
Confidence 4554421 2455555555543 2 456667777789988776 789999999999999876543 333
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |++++.++.. |++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.
T Consensus 109 ~-G~~v~~vd~~-------d~~~le~~i~~------~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 109 S-GVVVVHVDTT-------DLDKVKAALGP------KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred c-CcEEEEeCCC-------CHHHHHHhcCc------CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCc
Confidence 4 9999988753 68888888754 8899999999999999875 8888999999999999999985
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCC-CccEEEEEEecCHHHHHHHHHhcc-cC-CCChHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM-PGFRVGMIYSNNERVVSAATKMSS-FG-LVSSQT 309 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~-~GlRiG~l~~~~~~~~~~~~~~~~-~~-~~s~~~ 309 (464)
.. +... ++ .+ +..+++.|++|.++- .+++.|+++++++.+.+.+..... .+ ..++..
T Consensus 172 ~~-~~~~-----~l-~~-------------g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~ 231 (378)
T TIGR01329 172 SP-LLCN-----PL-EL-------------GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFD 231 (378)
T ss_pred cc-ccCC-----hh-hc-------------CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHH
Confidence 32 1111 11 11 345889999998853 358899998866666554444333 22 234443
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eee-c---------------CCccEEEEEecCccccc
Q 037587 310 QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI-RCL-K---------------SNAGLFCWVDMRHLLVS 371 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~-~---------------~~~g~f~~~~l~~~~~~ 371 (464)
...+..-++. +..+.++..++...+.+.|+++ .+ .+. | ...|-.+.+.+. .
T Consensus 232 a~l~~~~l~t-------l~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~-~--- 300 (378)
T TIGR01329 232 CWLLLRGIKT-------LAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETG-S--- 300 (378)
T ss_pred HHHHHccCCC-------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEEC-C---
Confidence 3333333322 3333444455556666666654 11 111 1 012234555552 1
Q ss_pred CChhHHHHHHHHHHHhcCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 372 NTFEAEKELWKKIIFEVGLNISPGSSCHC---------------------NEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 372 ~~~~~~~~l~~~ll~~~gI~v~pg~~f~~---------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.....+++..| +..++.++-|..... -.++.+|+|++. |+.+.+++-|.++++
T Consensus 301 --~~~~~~~~~~L-~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~ 374 (378)
T TIGR01329 301 --VALSKRLVEAT-KLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI---EDVDDLISDLDIAFV 374 (378)
T ss_pred --HHHHHHHHHhC-cCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHH
Confidence 12233566655 566777776665331 014689999995 556677777777776
Q ss_pred h
Q 037587 431 S 431 (464)
Q Consensus 431 ~ 431 (464)
+
T Consensus 375 ~ 375 (378)
T TIGR01329 375 T 375 (378)
T ss_pred h
Confidence 4
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-18 Score=170.03 Aligned_cols=172 Identities=18% Similarity=0.296 Sum_probs=127.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~ 164 (464)
...+++++++++.+.++ .+++++++|+++++.+++.++ +++||+|+++.|+|..+...+... |++++.++++
T Consensus 29 ~~~~~~~~e~~la~~~g------~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~-G~~~v~~d~d 101 (375)
T PRK11706 29 DGGFTRRCQQWLEQRFG------SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLR-GAKIVFVDIR 101 (375)
T ss_pred CCHHHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHc-CCEEEEEecC
Confidence 35667777777766543 468999999999999887765 689999999999999998888777 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-cCCCCCCc
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-FDSPSSSF 243 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~~~~~~~~ 243 (464)
+ ++|.+|++++++.+.+ ++++|+++ |++|... ++++|.++|+++|+++|+|++|+... +.+.
T Consensus 102 ~-~~~~~d~~~le~~i~~------~tk~i~~~---~~~G~~~---~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~---- 164 (375)
T PRK11706 102 P-DTMNIDETLIEAAITP------KTRAIVPV---HYAGVAC---EMDTIMALAKKHNLFVVEDAAQGVMSTYKGR---- 164 (375)
T ss_pred C-CcCCcCHHHHHHhcCC------CCeEEEEe---CCCCCcc---CHHHHHHHHHHcCCEEEEECccccccccCCe----
Confidence 5 3588999999998754 78888876 4689875 46778888999999999999998543 2222
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCC--cCCCCCccEEEEEEecCHHHHHHHHH
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLS--KDFSMPGFRVGMIYSNNERVVSAATK 298 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~S--K~~g~~GlRiG~l~~~~~~~~~~~~~ 298 (464)
.+..+ . .+.+.||+ |.++ +|.+.++++. ++.+.+.++.
T Consensus 165 -~~g~~-------------~-~~~~~Sf~~~K~l~-~g~gG~~~~~-~~~~~~~~~~ 204 (375)
T PRK11706 165 -ALGTI-------------G-HIGCFSFHETKNYT-AGEGGALLIN-DPALIERAEI 204 (375)
T ss_pred -eeecC-------------c-CEEEEeCCCCcccc-ccCCeEEEEC-CHHHHHHHHH
Confidence 11111 1 12334554 9997 6888777765 5555554443
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-18 Score=168.90 Aligned_cols=337 Identities=15% Similarity=0.093 Sum_probs=202.4
Q ss_pred CCCCCCCCceEEeeccccc--c--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAENQ--L--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+--. + ..|.+.+++.+.... .......-...-..+|.+.+++++ +
T Consensus 30 ~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~----------~~~~~~~~~~~~~~~l~~~l~~~~----~-- 93 (401)
T TIGR01885 30 HVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQK----------LTLSSRAFYNDVFGEFAEYVTKLF----G-- 93 (401)
T ss_pred EEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHh----------ccccccccCCHHHHHHHHHHHhhc----C--
Confidence 4444455678999875221 2 346666666554221 011111001112244555555543 2
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc---------CC-CCeEEEcCCCCCCh-hhhcccCCCc------------EEEEE
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA---------DP-GDAFLLPTPYYPGF-DRDLKWRPGV------------EIVPI 161 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~---------~~-gd~Vlv~~p~y~~~-~~~~~~~~g~------------~~~~v 161 (464)
.+.+++++++++++..++..+. .+ .+.|+...-+|++. ...+... +- .++.+
T Consensus 94 ----~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 168 (401)
T TIGR01885 94 ----YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMS-TDPDSRTNFGPYVPGFKKI 168 (401)
T ss_pred ----CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCc-CCcccccccCCCCCCceEe
Confidence 3588999999999999998752 12 36788888887753 2322221 21 12222
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHH-HHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQ-ELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~-~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+. .|++.+++.+++. +.++.+|++..+++++|...+.+ .+++|.++|+++|+++|+||+|.++.+.+.
T Consensus 169 ~~-------~d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~- 237 (401)
T TIGR01885 169 PY-------NNLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK- 237 (401)
T ss_pred CC-------CCHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-
Confidence 21 2688898888642 34677777776799999988654 699999999999999999999976433222
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-c-ccCCCChHHHHHHHHHcC
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-S-SFGLVSSQTQYLLSRMLS 318 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~-~~~~~s~~~q~~~~~~l~ 318 (464)
. ... +. .+ ..+.++ ++||.++..|+|+|+++++ +.+.+.+... . ..+..+++.+.++.++|+
T Consensus 238 -~-~~~-~~-~~--------~~~di~---~~gK~l~~g~~~ig~v~~~-~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~ 301 (401)
T TIGR01885 238 -L-LCV-DH-EN--------VKPDIV---LLGKALSGGVYPVSAVLAD-DDVMLTIKPGEHGSTYGGNPLACAVAVAALE 301 (401)
T ss_pred -h-hHH-hh-cC--------CCCCEE---EeeccccCCCCCcEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 1 111 11 11 112333 5789998656999999995 4455544331 1 122346777877777765
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee---ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC---LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPG 395 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg 395 (464)
... +. ...+.+++..+++.+.|++++..+ .++.| .+..+.++.... . ....+++..|. ++||.+.|+
T Consensus 302 ~i~--~~---~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g-~~~~i~~~~~~~--~-~~~~~l~~~l~-~~Gv~v~~~ 371 (401)
T TIGR01885 302 VLE--EE---KLAENAEKLGEIFRDQLKKLPKPIITEVRGRG-LLNAIVIDESKT--G-RTAWDLCLKLK-EKGLLAKPT 371 (401)
T ss_pred HHH--hc---cHHHHHHHHHHHHHHHHHhccCCceeEEeecC-eeEEEEeccCcc--h-hHHHHHHHHHH-hCCEEEEec
Confidence 321 11 223445556677888888774332 23444 455455543211 0 12345777765 679999875
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 396 SSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 396 ~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
. ++.+||++.. ++++++++++++|++++
T Consensus 372 ~------~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 372 H------GNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred C------CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 2 4689999865 79999999999999876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-17 Score=166.92 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh---hcccCCCcEEEEEecC
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR---DLKWRPGVEIVPIHCS 164 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~~g~~~~~v~~~ 164 (464)
.|.+++|++.+ ....+ ++++++.++..++.+++++||+|+++++.|+.... .+... |++++.++..
T Consensus 51 ~lE~~la~leg---------~~~~v-~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~-G~~v~~v~~~ 119 (397)
T PRK05939 51 ALEAKITKMEG---------GVGTV-CFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGL-GVEVTMVDAT 119 (397)
T ss_pred HHHHHHHHHhC---------CCeEE-EeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhc-CCEEEEECCC
Confidence 78888888764 22344 55555899999999999999999999999976533 34445 9999888752
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
|++++++.+.+ ++++|++++|+||||.+ .++++|+++|+++|+++|+|++|+.... +
T Consensus 120 -------d~e~l~~~l~~------~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~~------~- 176 (397)
T PRK05939 120 -------DVQNVAAAIRP------NTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPWL------F- 176 (397)
T ss_pred -------CHHHHHHhCCC------CCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCcccccc------c-
Confidence 68889888754 88999999999999988 5799999999999999999999863211 0
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEec
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSN 288 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~ 288 (464)
.. . ..+..+++.|+||.++..|.++|+++..
T Consensus 177 ~~--~-----------~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 177 RP--K-----------DVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred Cc--c-----------ccCCEEEEecCeecccCCCCeEEEEEec
Confidence 00 0 1256789999999998889999998774
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-17 Score=165.25 Aligned_cols=359 Identities=11% Similarity=0.081 Sum_probs=205.5
Q ss_pred CCCCCCCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 27 NPYDQLHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 27 ~~y~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
..|..+.+...+||+..+. ..+ ..|.+.+++.++.+ .+..+.......+....+|+.+.+...
T Consensus 31 G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-------------~l~~~~~~~~~~~~~~~la~~l~~~~p 97 (425)
T PRK07495 31 NAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLD-------------RFTHTCHQVVPYENYVRLAERLNALVP 97 (425)
T ss_pred ecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHh-------------hccCcccCccCCHHHHHHHHHHHHhCC
Confidence 3455556677889987652 223 34667777766432 111111111123445556666654321
Q ss_pred CCCCCC-CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC-------------cEEEEEecCCC
Q 037587 103 NKVKFD-PNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG-------------VEIVPIHCSSS 166 (464)
Q Consensus 103 ~~~~~~-~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g-------------~~~~~v~~~~~ 166 (464)
-. .+.++++++++|++..+++... ....+|+...-+|++.........| ..++.+|.+..
T Consensus 98 ----~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (425)
T PRK07495 98 ----GDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVE 173 (425)
T ss_pred ----CCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcc
Confidence 11 2589999999999999988642 2335788888888775422111001 01233333211
Q ss_pred CCcccC----HHHHHHHHHHHhhcCCceEEEEEeCC--CCCCC-CCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 167 NGFRIT----ISALENAYQQAQTLNLKVKGVLITNP--SNPLG-TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 167 ~~~~~d----~~~l~~~i~~~~~~~~~~~~vil~~P--~NPtG-~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
....+ ++.+++.+.+. ....++.+|++. | +| +| ..+|.+.+++|.++|+++|+++|+||+|.++...+.
T Consensus 174 -~~g~~~~~~~~~l~~~~~~~-~~~~~iaavi~E-Pv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~ 249 (425)
T PRK07495 174 -LHGVSVEQSLAALDKLFKAD-VDPQRVAAIIIE-PVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK 249 (425)
T ss_pred -cccccHHHHHHHHHHHHHhc-cCCCceEEEEEC-CccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC
Confidence 11122 33344444320 112356666554 5 55 78 457999999999999999999999999987433222
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHH-
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRM- 316 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~- 316 (464)
. .. . . ..+.+..+.||||.++ +|+|+|++++++ .+.+.+.. ....+..++++++++.+.
T Consensus 250 --~-~a---~-~---------~~gv~pDi~tlsK~l~-~G~pigav~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~l 311 (425)
T PRK07495 250 --L-FA---M-E---------HHEVAADLTTMAKGLA-GGFPLAAVTGRA-EIMDAPGPGGLGGTYGGNPLGIAAAHAVL 311 (425)
T ss_pred --c-ee---e-c---------ccCCCCCEEeehhhhc-CCccceEEEEcH-HHHhccCCCCcCCCCCCCHHHHHHHHHHH
Confidence 1 11 1 1 1133445789999998 999999999954 45444332 122234677787755444
Q ss_pred --cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccc-cCChhHHHHHHHHHHHhcCeEEe
Q 037587 317 --LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV-SNTFEAEKELWKKIIFEVGLNIS 393 (464)
Q Consensus 317 --l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~-~~~~~~~~~l~~~ll~~~gI~v~ 393 (464)
+.+.++ .++.+++.+.++++.+.+.+. +......-.-|+++|+++..... .........+...++ ++||++.
T Consensus 312 ~~l~~~~l-~~~~~~~g~~l~~~L~~l~~~---~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~ 386 (425)
T PRK07495 312 DVIEEEDL-CERANQLGNRLKQRLASLRET---VPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKAL-EKGLILL 386 (425)
T ss_pred HHHHhchH-HHHHHHHHHHHHHHHHHHHhh---CCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEe
Confidence 444443 444555555555544433332 22111111237899999853211 111111223555554 6899997
Q ss_pred CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 394 PGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 394 pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++.. ..+.+||.... ++++++++++++|.+++++.+
T Consensus 387 ~~g~----~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 387 TCGV----HGNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred ecCC----CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 6422 13679999876 799999999999999997654
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-17 Score=165.17 Aligned_cols=357 Identities=12% Similarity=0.053 Sum_probs=206.2
Q ss_pred CCCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 27 NPYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 27 ~~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
..|..+.+...+||+..+ ...+ ..|.+.+++.++.+. . ....+.. ...+....+|+.+.+...
T Consensus 31 G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~----------~-~~~~~~~--~~~~~~~~la~~l~~~~p 97 (421)
T PRK06777 31 NATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQ----------F-THTAYQI--VPYASYVTLAERINALAP 97 (421)
T ss_pred cCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhh----------c-ccccccc--cCChHHHHHHHHHHHhCC
Confidence 345555567788998765 2223 346666766664321 1 1111111 123344556666554321
Q ss_pred CCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcE-------------EEEEecCCCC
Q 037587 103 NKVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVE-------------IVPIHCSSSN 167 (464)
Q Consensus 103 ~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~-------------~~~v~~~~~~ 167 (464)
. -..+.++++++++|++..+++... ....+|+...-+|++....+....+.. +..++... .
T Consensus 98 ~---~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~-~ 173 (421)
T PRK06777 98 I---DGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPN-E 173 (421)
T ss_pred C---CCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCc-c
Confidence 0 123689999999999999988642 223568888888887653332111210 11112111 0
Q ss_pred Ccc----cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 168 GFR----ITISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 168 ~~~----~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
... -+++.+++.+.+. ....++.+|++.-..+..|. ++|.+.+++|.++|+++|+++|.||+|.++.+.+. .
T Consensus 174 ~~~~~~~~~~~~l~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~--~ 250 (421)
T PRK06777 174 LHGVSVEEALSSVERLFKAD-IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK--L 250 (421)
T ss_pred ccCcCHHHHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc--h
Confidence 000 1245566655421 01235666555433677885 57899999999999999999999999997544332 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~ 320 (464)
.+...+ . ..+. +.+|||.+| +|+|+||++++ +.+.+.+.... ..+..+++++.++.+.|+..
T Consensus 251 -~~~~~~-~---------~~pD---iv~~sK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~ 314 (421)
T PRK06777 251 -FAMEYY-D---------VKPD---LITMAKSLG-GGMPISAVVGR-AEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVI 314 (421)
T ss_pred -hhhhhc-C---------CCCC---EEeeehhhc-CCCceEEEEEc-HHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 121111 1 1122 237999999 99999999995 45555443221 22346788888888887532
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhC----C-CeeecCCccEEEEEecCccc-ccCChhHHHHHHHHHHHhcCeEEeC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVA----G-IRCLKSNAGLFCWVDMRHLL-VSNTFEAEKELWKKIIFEVGLNISP 394 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g-~~~~~~~~g~f~~~~l~~~~-~~~~~~~~~~l~~~ll~~~gI~v~p 394 (464)
+ + +...+.++++.+++.+.|+++ + +....+.|.+| .+.+.... ......-...+...+ .++||++.|
T Consensus 315 ~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~-~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~~ 387 (421)
T PRK06777 315 A---E--EKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMV-AVEFNDPQTGKPSPEFTRQYQRQA-LEEGLLLLS 387 (421)
T ss_pred H---h--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEE-EEEEecCccCCccHHHHHHHHHHH-HhCCeEEee
Confidence 1 1 233444555555566655543 2 23345666655 44443211 111111122344444 468999999
Q ss_pred CCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 395 GSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 395 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
+..|+ +++||++.. ++++++++++++|.+++.
T Consensus 388 ~~~~g----~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 388 CGVHG----NVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred cCCCC----CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 87653 589999965 799999999999999874
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=168.56 Aligned_cols=287 Identities=15% Similarity=0.168 Sum_probs=185.6
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEe
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~ 162 (464)
....++++.++++++ .+++++++|+++++..++.++ .++||+|+++.++|..+...+... |++++.++
T Consensus 18 ~~~~~~~~~la~~~~----------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~ 86 (352)
T cd00616 18 PKVREFEKAFAEYLG----------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLL-GATPVFVD 86 (352)
T ss_pred HHHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHc-CCeEEEEe
Confidence 346899999999985 246788889999999999998 589999999999999888777766 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
+++ ..+.+|++.+++.+.+ ++++|+++ ||+|...+ +++|.++|+++|+++|+|++++.......
T Consensus 87 ~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~--- 150 (352)
T cd00616 87 IDP-DTYNIDPELIEAAITP------RTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKG--- 150 (352)
T ss_pred cCC-CcCCcCHHHHHHhcCc------CCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECC---
Confidence 864 3678899999988743 78888877 46898765 66677888899999999999973211111
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCC--cCCCCCccEEEEEEecCHHHHHHHHHhcccC-----------------
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLS--KDFSMPGFRVGMIYSNNERVVSAATKMSSFG----------------- 303 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S--K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~----------------- 303 (464)
.. + . . ...+.+.||+ |.++ +.+.|+++.+++.+.+.++......
T Consensus 151 -~~---~-~---------~-~~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (352)
T cd00616 151 -RK---V-G---------T-FGDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNY 213 (352)
T ss_pred -EE---c-c---------c-CcceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeecc
Confidence 00 0 0 0 1224566766 8874 3356888887666655444322111
Q ss_pred CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC-----ccEEEEEecCcccccCChhHH
Q 037587 304 LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSN-----AGLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 304 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~f~~~~l~~~~~~~~~~~~ 377 (464)
.++.+...++... .+.+++..++.++..+++.+.|.+. |+++..+. ....+.+.++.. .. ...
T Consensus 214 ~~~~~~aa~~~~~-------l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~ 282 (352)
T cd00616 214 RLSEIQAAIGLAQ-------LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE-AG---ESR 282 (352)
T ss_pred CcCHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc-CC---CCH
Confidence 0112211111111 1223445555567777888888875 77765322 123444445421 00 112
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC--------------CC-------CCeEEEEeec-CCHHHHHHHHHHHH
Q 037587 378 KELWKKIIFEVGLNISPGSSCHC--------------NE-------PGWFRICFAN-ITEETLQVALQRIK 426 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~--------------~~-------~~~~Ris~~~-~~~e~l~~~l~~l~ 426 (464)
.++...| +++||.+........ .. .+.+|+++.. .++++++.++++|+
T Consensus 283 ~~v~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 283 DELIEAL-KEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HHHHHHH-HHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 2455555 567997652111000 00 2579999987 79999999988873
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-18 Score=169.16 Aligned_cols=157 Identities=21% Similarity=0.236 Sum_probs=120.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhccc---CCCcEEEEEe
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKW---RPGVEIVPIH 162 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~---~~g~~~~~v~ 162 (464)
..+|++.||++.+ .+..++++++++++..++.+++++||+|+++.+.|++....+.. ..|+++..++
T Consensus 60 ~~~Le~~lA~l~g----------~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d 129 (425)
T PRK06084 60 NDVLEQRVAALEG----------GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA 129 (425)
T ss_pred HHHHHHHHHHHhC----------CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC
Confidence 4688888888864 23456778888999999999999999999999999865544321 1266666554
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
. .|++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.... ..
T Consensus 130 ~-------~d~e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~-~~--- 189 (425)
T PRK06084 130 H-------DDIAALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL-CR--- 189 (425)
T ss_pred C-------CCHHHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-CC---
Confidence 2 378999998865 7899999999999999987 67788889999999999999973211 11
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEec
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSN 288 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~ 288 (464)
+ ..+ +..+++.|++|.+|.+|.++|.+++.
T Consensus 190 --p-~~~-------------gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 190 --P-FEH-------------GADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred --h-hhc-------------CCCEEEECchhcccccccceeEEEEe
Confidence 1 111 34588999999998889999987763
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-18 Score=169.33 Aligned_cols=210 Identities=17% Similarity=0.169 Sum_probs=151.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
...|.+.+|++.+ ....+++++++.|+.+++.+++++||.|+++.++|.+.... +... |+++..+
T Consensus 63 v~~lE~~la~leg----------~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~-Gi~v~~v 131 (432)
T PRK06702 63 LAAFEQKLAELEG----------GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKL-GIDVTFF 131 (432)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHC-CCEEEEE
Confidence 4677778888764 23578899999999999999999999999999999866554 4555 9998888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
.. .+|++.+++++++ ++|+|++.+|+||++.+.+ +++|+++|+++|+++|+|++|..-.+
T Consensus 132 d~------~~d~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~----- 191 (432)
T PRK06702 132 NP------NLTADEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL----- 191 (432)
T ss_pred CC------CCCHHHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh-----
Confidence 53 3688999998865 8999999999999999976 88889999999999999999852111
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCc-----CCCCCccEE-----EEEEecCHHHH------------------
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSK-----DFSMPGFRV-----GMIYSNNERVV------------------ 293 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK-----~~g~~GlRi-----G~l~~~~~~~~------------------ 293 (464)
... + ..+-.|+++|+|| ..+++|+++ +|..++...+.
T Consensus 192 --~~p--l-----------~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~ 256 (432)
T PRK06702 192 --CQA--F-----------EHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAA 256 (432)
T ss_pred --CCh--h-----------hcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchh
Confidence 111 1 1245588999999 777888887 56554322211
Q ss_pred ----H-HHHHhcccC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 294 ----S-AATKMSSFG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 294 ----~-~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
+ .......++ .++++....+...|+.- ..+.++..++...+.+.|+++
T Consensus 257 ~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl-------~lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 257 AYIVKARVQLLRDYGNCMSPFNAYISNIGLETL-------HLRMERHSENALAVAKWLADH 310 (432)
T ss_pred hHHHHHHHHHHHHccCCCCHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 0 111222232 46677777777777653 233334456777788888876
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=168.42 Aligned_cols=218 Identities=15% Similarity=0.194 Sum_probs=148.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccC
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWR 153 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~ 153 (464)
..|... |. ..++++.+.+.+..+ .++.++++|+++++..++ .++++||.|+++.|.|+.+... +...
T Consensus 125 ~~Y~r~-gn-pt~~aLE~~lA~leg------~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~ 195 (464)
T PLN02509 125 YDYTRS-GN-PTRDALESLLAKLDK------ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRS 195 (464)
T ss_pred CccCCC-CC-HHHHHHHHHHHHHhC------CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHC
Confidence 346654 53 467888888776543 456677788889987665 5789999999999999987633 3345
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
|++++.++. .|++++++.+.+ ++++|++++|+||||.+ .++++|+++|+++|+++|+|++|..
T Consensus 196 -G~~v~~vd~-------~d~e~l~~ai~~------~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~ 258 (464)
T PLN02509 196 -GVVVKRVNT-------TNLDEVAAAIGP------QTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMS 258 (464)
T ss_pred -CeEEEEeCC-------CCHHHHHHhCCc------CCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence 888887753 267888887753 78999999999999987 6899999999999999999999864
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhccc-C-CCChHHH
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSSF-G-LVSSQTQ 310 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~~-~-~~s~~~q 310 (464)
..+ .. . + ..+..+++.|++|.++-+| +=.|++++.++.+.+.+...+.. . ..++...
T Consensus 259 ~~~-~~-----p---l-----------~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A 318 (464)
T PLN02509 259 PVL-SR-----P---L-----------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318 (464)
T ss_pred ccc-CC-----h---h-----------hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHH
Confidence 322 11 1 1 1134588999999986433 44688876555544433322222 1 2344433
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.++..-|+ .+..+.++..+....+.+.|+++
T Consensus 319 ~l~lr~L~-------tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 319 WLCLRGIK-------TMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred HHHHhhhh-------hHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333222 24556666677778888888876
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=169.15 Aligned_cols=347 Identities=12% Similarity=0.049 Sum_probs=203.6
Q ss_pred CCCCCCCCCceEEeeccc--cc--ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLAE--NQ--LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~--n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+|||..+. +. +.+|.+.+++.+..+. ....|....+..+|.+.+++.+
T Consensus 42 ~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~------------~~~~~~~~~~~~~la~~L~~~~------ 103 (426)
T PRK00062 42 AYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK------------GLSFGAPTELEVELAELVIELV------ 103 (426)
T ss_pred CEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh------------CCcCCCCCHHHHHHHHHHHHhC------
Confidence 344445567889998763 22 2456677666654221 1112222223344444444442
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCc------------EEE-----EEecC
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGV------------EIV-----PIHCS 164 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~-----~v~~~ 164 (464)
...+.+++++++++++..+++.... .++.|+..+++|+++...+....|. ... .+...
T Consensus 104 ---~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (426)
T PRK00062 104 ---PSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP 180 (426)
T ss_pred ---CCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC
Confidence 1356899999999999999987532 3578999999999875322111010 000 01111
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCC-HHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMT-HQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s-~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
..|++.+++.+.+ ...++.+|++.....-+|.+.+ .+.+++|.++|++||+++|+||+|.++.++..
T Consensus 181 -----~~d~~~l~~~i~~---~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~---- 248 (426)
T PRK00062 181 -----YNDLEAVEELFEE---YGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALG---- 248 (426)
T ss_pred -----CCCHHHHHHHHHh---CCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCc----
Confidence 1268888887753 1236666666522344788775 77899999999999999999999987522211
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh---cc--cCCCChHHHHHHHHHcC
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM---SS--FGLVSSQTQYLLSRMLS 318 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~---~~--~~~~s~~~q~~~~~~l~ 318 (464)
.. .+... . .++ +.+|||.+| .|+++|+++++ +.+.+.+... .. .+..+++.++++.+.|+
T Consensus 249 ~~-~~~~~-~-------~pD----i~~~gK~l~-~G~p~ga~~~~-~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~ 313 (426)
T PRK00062 249 GA-QGYYG-V-------TPD----LTTLGKIIG-GGLPVGAFGGR-REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLK 313 (426)
T ss_pred cH-HHHhC-C-------Ccc----hHhhhhHhh-CCCcceeeeEH-HHHHHhhccCCCceecccCcCCHHHHHHHHHHHH
Confidence 11 11111 0 112 468999998 99999999884 4555555321 11 12356777777776665
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cCCccEEEEEecCcccc-------cCChhHHHHHHHHHHHhcCe
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL-KSNAGLFCWVDMRHLLV-------SNTFEAEKELWKKIIFEVGL 390 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~f~~~~l~~~~~-------~~~~~~~~~l~~~ll~~~gI 390 (464)
--+- .+..++.++.....++.|.+.++++++... .+.| .++-+.+..... ..+......+...++ ++||
T Consensus 314 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G-~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv 390 (426)
T PRK00062 314 LLKE-PGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVG-SMFGLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGV 390 (426)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec-ceEEEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCe
Confidence 3211 123444444444455555555555665542 3444 455555532110 001111234666665 6799
Q ss_pred EEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 391 NISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 391 ~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+.|.. .+.+++++. ++++++++++++|++++.+.
T Consensus 391 ~v~~~~------~~~~~~~~~-~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 391 YLAPSQ------FEAGFVSAA-HTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred EeecCC------cCceeeecc-CCHHHHHHHHHHHHHHHHhh
Confidence 998742 124677754 69999999999999998753
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=163.58 Aligned_cols=212 Identities=16% Similarity=0.159 Sum_probs=143.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
.++.++++++.+....+ .++.+ +++++++|+..++.+++++||.|+++.|.|+++... ++.. |+++..+
T Consensus 62 gnPt~~~Le~~la~le~-----~~~~v-~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~-Gi~v~~v 134 (395)
T PRK05967 62 GTPTTDALCKAIDALEG-----SAGTI-LVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRL-GVEVEYY 134 (395)
T ss_pred CChHHHHHHHHHHHHhC-----CCCEE-EECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhc-CeEEEEe
Confidence 35666666666654322 33444 555578999999999999999999999999987643 3445 9988887
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ +.+.+++++++ ++++|++++|+||++.. .++++|+++|+++|+++|+|++|....+-
T Consensus 135 d~~-------~~e~l~~al~~------~TklV~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a~p~~~---- 194 (395)
T PRK05967 135 DPE-------IGAGIAKLMRP------NTKVVHTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWATPLYF---- 194 (395)
T ss_pred CCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCccCceec----
Confidence 532 34677777754 78999999999998755 78999999999999999999999753221
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHH-hcccC-CCChHHHHHHHHHcC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATK-MSSFG-LVSSQTQYLLSRMLS 318 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~-~~~~~-~~s~~~q~~~~~~l~ 318 (464)
... ..+..+++.|.+|.++ -.++-.|+++.++ .+.+.+.. ....+ .+++.....+..-++
T Consensus 195 ---~pl-------------~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~-~~~~~l~~~~~~~G~~~~p~da~l~~rgl~ 257 (395)
T PRK05967 195 ---RPL-------------DFGVDISIHAATKYPSGHSDILLGTVSANE-KCWPQLLEAHGTLGLCAGPDDTYQILRGLR 257 (395)
T ss_pred ---Chh-------------HcCCCEEEEecccccCCCCCeeEEEEEcCH-HHHHHHHHHHHHcCCCCCHHHHHHHHcCcc
Confidence 111 1255688999999973 3457789777643 33332322 22222 345554444333333
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
. +.-+.++..++...+.+.|+++
T Consensus 258 T-------l~lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 258 T-------MGIRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred c-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 3 4444555566777788888876
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-18 Score=167.15 Aligned_cols=283 Identities=23% Similarity=0.298 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC-CcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCCCChh----hhcccCCCcEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDP-NKLVLTAGSTAANETLMFCL---ADPGDAFLLPTPYYPGFD----RDLKWRPGVEI 158 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~----~~~~~~~g~~~ 158 (464)
.+.|+.++++++ +++ ++|++++|+++++..++.++ +++|++|++..-.|++.. ...+.. |+++
T Consensus 46 ~~~r~~la~~lg--------~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~-g~~v 116 (371)
T PF00266_consen 46 EEAREALAKLLG--------APPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRK-GAEV 116 (371)
T ss_dssp HHHHHHHHHHHT--------SSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHT-TEEE
T ss_pred HHHHHHHHHhcC--------Cccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccc-hhhh
Confidence 467777788776 667 89999999999999999999 789999999999887655 223344 9999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
..++.+.+ ..+|++.+++.+.+ ++++|+++..+|-||..+| +++|.++|+++|+++++|.+++ ++.
T Consensus 117 ~~i~~~~~--~~~~~~~~~~~l~~------~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~---~g~ 182 (371)
T PF00266_consen 117 RVIPADPG--GSLDLEDLEEALNP------DTRLVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQS---AGC 182 (371)
T ss_dssp EEEEEGTT--SSCSHHHHHHHHHT------TESEEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTT---TTT
T ss_pred cccccccc--chhhhhhhhhhhcc------ccceEEeecccccccEEee---eceehhhhhccCCceeEechhc---ccc
Confidence 99988643 35789999999965 8999999999999999987 6678888889999999999997 332
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-----------------
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS----------------- 301 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~----------------- 301 (464)
. + ..+. ..+..+++.|..|.+|.+| +|+++.+++. .+.++....
T Consensus 183 ~--~-id~~-------------~~~~D~~~~s~~Kl~gp~G--~g~l~v~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~ 243 (371)
T PF00266_consen 183 V--P-IDLD-------------ELGADFLVFSSHKLGGPPG--LGFLYVRPEA-IERLRPAKPGGGYLDFPSLQEYGLAD 243 (371)
T ss_dssp S--S---TT-------------TTTESEEEEESTSTTSSST--EEEEEEEHHH-HHHHHTSSSSSSTTTHHHHHHHCHHS
T ss_pred c--c-cccc-------------ccccceeeecccccCCCCc--hhhheehhhh-hhccccccccccccccccchhccccc
Confidence 2 1 2211 2255678999999556556 7999985543 333321110
Q ss_pred ----c--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec----CCccEEEEEecCcccc
Q 037587 302 ----F--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK----SNAGLFCWVDMRHLLV 370 (464)
Q Consensus 302 ----~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~----~~~g~f~~~~l~~~~~ 370 (464)
+ ++.+.+...++..+++.-. +.-+++.+++..+..+++.+.|.+. ++.+.. ...+..+.+.++.. .
T Consensus 244 ~~~~~~~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 320 (371)
T PF00266_consen 244 DARRFEGGTPNVPAIYALNEALKLLE--EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-D 320 (371)
T ss_dssp TTTGSSSSS--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-S
T ss_pred ccccccccceeeehhhhHHHHHhhhh--ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-C
Confidence 1 1333444444444443321 3335566677788888889999887 445532 22233555555421 1
Q ss_pred cCChhHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEeec-CCHHHHHHH
Q 037587 371 SNTFEAEKELWKKIIFEVGLNISPGSSCHC------NEPGWFRICFAN-ITEETLQVA 421 (464)
Q Consensus 371 ~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Ris~~~-~~~e~l~~~ 421 (464)
..++...| +++||.+..|..+.. ...+.+|+|++. .++++++++
T Consensus 321 ------~~~~~~~L-~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 321 ------ADDVVKYL-EERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp ------HHHHHHHH-HHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred ------HHHHHHHH-hhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 12355555 556999998776541 123789999988 788998864
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-18 Score=168.70 Aligned_cols=171 Identities=13% Similarity=0.230 Sum_probs=130.9
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEec
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
...+|++++|++++ . ++++.++|+++++.+++.++ +++||+|+++.|+|..+...+... |++++.+++
T Consensus 34 ~~~~le~~la~~~g--------~--~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~-G~~~v~vd~ 102 (379)
T PRK11658 34 KNQALEQAFCQLTG--------N--QHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLL-GATPVMVDV 102 (379)
T ss_pred hHHHHHHHHHHHhC--------C--CeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHc-CCEEEEEec
Confidence 46899999999986 2 36788999999999999998 799999999999999888777766 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc-ccCCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT-VFDSPSSS 242 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~-~~~~~~~~ 242 (464)
++ ++|.+|++.+++.+.+ ++++|+ |+||+|...+ +++|.++|+++|+++|+|++|+.. .+.+.
T Consensus 103 ~~-~~~~~d~~~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~--- 166 (379)
T PRK11658 103 DR-DTLMVTPEAIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKGR--- 166 (379)
T ss_pred CC-CcCCcCHHHHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECCe---
Confidence 75 4577899999998864 788776 5567998764 677888999999999999999832 22221
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM 299 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~ 299 (464)
.+ . ..+. .+.||++...+++.+.|+++.+++.+.+.++.+
T Consensus 167 --~~----g---------~~g~--~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~ 206 (379)
T PRK11658 167 --HI----G---------ARGT--AIFSFHAIKNITCAEGGLVVTDDDELADRLRSL 206 (379)
T ss_pred --ec----C---------CCCC--EEEeCCCCCcCcccCceEEEECCHHHHHHHHHH
Confidence 11 1 1122 356776555556678899988767766555443
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=160.48 Aligned_cols=288 Identities=17% Similarity=0.266 Sum_probs=178.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC------CCeEEEcCCCCCChhhhcccCCCcEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADP------GDAFLLPTPYYPGFDRDLKWRPGVEIV 159 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~------gd~Vlv~~p~y~~~~~~~~~~~g~~~~ 159 (464)
.++|.+.|.+.++..-+ ...+.-.|++++|++++++.++.+|... --.|+...|.|+.|....... .-...
T Consensus 45 s~eL~~~Ir~LH~~VGN--Avt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f-~s~~y 121 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGN--AVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFF-DSRLY 121 (363)
T ss_dssp -HHHHHHHHHHHHHH-S--B--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT--BTTE
T ss_pred cHHHHHHHHHHHHHhcc--ccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhc-cccCc
Confidence 48899999998876533 2235558999999999999999998533 147999999999988776544 32223
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 160 PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 160 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
.+.-|. ..|. +- .++..-.=++++||||.|.+ .+.++ ...+..+|.|-+|. +.
T Consensus 122 ~w~Gda-~~~~-~~------------~~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYY---WP-- 174 (363)
T PF04864_consen 122 KWAGDA-SNFK-NS------------DNPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYY---WP-- 174 (363)
T ss_dssp EEEEEC-CCGT-T-------------S-CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT----ST--
T ss_pred cccccH-Hhhc-cC------------CCCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeee---cc--
Confidence 333221 1221 10 01122223899999999987 45555 34567789999996 32
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC--CCChHHHHHHHHHc
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG--LVSSQTQYLLSRML 317 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l 317 (464)
.+.++-. ..+..|.+.|+||.-|-+|-|+||.+..++.+.+.+.++...+ .+|.-+|.-+..+|
T Consensus 175 --hyTpI~~------------~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiL 240 (363)
T PF04864_consen 175 --HYTPITA------------PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKIL 240 (363)
T ss_dssp --TTS---S-------------B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHH
T ss_pred --cccccCC------------CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence 2222211 1156678899999999999999999998888877776654333 36777887777666
Q ss_pred CC----chh---hHHHHHHHHHHHHHHHHHHHHHHHhCC-C--------------eeecCCccEEEEEecCcccccCChh
Q 037587 318 SD----KKF---TCNYMKENRKRLRKRKEMLVSGLKVAG-I--------------RCLKSNAGLFCWVDMRHLLVSNTFE 375 (464)
Q Consensus 318 ~~----~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~g-~--------------~~~~~~~g~f~~~~l~~~~~~~~~~ 375 (464)
+. .+. .....+--++.+++|...|.+.+..-+ + ++..|.. -|.|+++.....
T Consensus 241 k~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psP-afAWlkCe~eed----- 314 (363)
T PF04864_consen 241 KVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSP-AFAWLKCEREED----- 314 (363)
T ss_dssp HHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE----SEEEEEESSCGG-----
T ss_pred HHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCC-CeEEEecCCccc-----
Confidence 52 100 002455667788888899999887642 1 1222233 499999985321
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 376 AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
+-|...|++.||.-+.|..|+. ++.|+|||+-. ++++++.++++|.++
T Consensus 315 ---~DC~~~l~~~~I~tr~G~~fga-~~ryVRlSml~-~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 315 ---EDCYAVLREAKIITRSGVLFGA-DSRYVRLSMLK-RDDDFDQLLERLSKL 362 (363)
T ss_dssp ---SSHHHHHHCTTEEEEEGGGGTS--TTEEEEESSS--HHHHHHHHHHHHCC
T ss_pred ---ccHHHHHHhCCcccCCCCccCC-CCCeEEEeccC-CHHHHHHHHHHHHhh
Confidence 1367778899999999999986 57799999974 899999999999764
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=163.74 Aligned_cols=208 Identities=18% Similarity=0.225 Sum_probs=137.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
...|++.+|++.+ ....+++++| +.++..++ .++++||+|++++|.|++.... +... |+++..+
T Consensus 52 ~~~Le~~la~l~g---------~~~al~~~SG-~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~-gi~v~~v 119 (380)
T PRK06176 52 RFALEELIADLEG---------GVKGFAFASG-LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKN-GLSCTII 119 (380)
T ss_pred HHHHHHHHHHHhC---------CCCEEEECCH-HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhc-CeEEEEc
Confidence 4678888888875 2334656555 55887666 5679999999999999755432 3334 8888777
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+. .|++.+++++++ ++++|++.+|+||||.+.+ +++|.++|+++|+++|+|++|+...+. .
T Consensus 120 d~-------~d~e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~-~-- 180 (380)
T PRK06176 120 DT-------SDLSQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ-N-- 180 (380)
T ss_pred CC-------CCHHHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccC-C--
Confidence 64 268888887754 7899999999999999975 667888899999999999999853222 2
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhcccC--CCChHHHHHHHHHcC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSSFG--LVSSQTQYLLSRMLS 318 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~ 318 (464)
++ .+ +..+++.|++|.++.+| .-.|++++.++.+.+.+...+... ..++.....+..-++
T Consensus 181 ---p~-~~-------------gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~ 243 (380)
T PRK06176 181 ---PL-LL-------------GADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIK 243 (380)
T ss_pred ---cc-cc-------------CCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccC
Confidence 11 11 34578899999996554 456777775555555444433332 234444333333332
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
. +..+.++..+....+.+.|+++
T Consensus 244 t-------l~~R~~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 244 T-------LGLRMEAHQKNALCVAEFLEKH 266 (380)
T ss_pred c-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 2 2333334445556667777765
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=159.90 Aligned_cols=325 Identities=16% Similarity=0.186 Sum_probs=214.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh-cccCCCcE
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD-LKWRPGVE 157 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~~g~~ 157 (464)
.|.......+|.++++++++ .+.++.+++++.|+.++....++|||.| +.++|...... +... |+.
T Consensus 66 ~yag~~s~~~lE~~va~~~G----------~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~-Gav 132 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELYG----------FKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKN-GAT 132 (450)
T ss_pred hhcCCCcHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhC-CeE
Confidence 48777778999999999986 4579999999999998887788999977 66777433333 4545 887
Q ss_pred EEEEecCC--------CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCC-CCCCCCHHHHHHHHHHHhhCCeEEEEe
Q 037587 158 IVPIHCSS--------SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP-LGTAMTHQELNHLINFSKSKRIHIVSD 228 (464)
Q Consensus 158 ~~~v~~~~--------~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NP-tG~~~s~~~l~~i~~~~~~~~~~lI~D 228 (464)
++.++.++ ...+.+|++.+++.|++. ...++++|.+.+++|- .|..+|.++++++.++|+++|+.+|+|
T Consensus 133 ~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~--~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~D 210 (450)
T TIGR02618 133 FVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEV--GADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYD 210 (450)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhccc--cCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 76665431 234778999999999741 1124557888888884 589999999999999999999999999
Q ss_pred cccccc--ccC---CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC-ccEEEEEEecCHHHHHHHHHhcc-
Q 037587 229 EIYSGT--VFD---SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP-GFRVGMIYSNNERVVSAATKMSS- 301 (464)
Q Consensus 229 eay~~~--~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~-GlRiG~l~~~~~~~~~~~~~~~~- 301 (464)
.+.... .|- .++..-.++.+++.++ ..-...++.|..|.++.+ | |+++..++.+.+..+....
T Consensus 211 aAR~~gNA~~I~~re~g~~~~~i~ei~~e~-------~~~aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~ 280 (450)
T TIGR02618 211 ATRCVENAYFIKEREQGYEDKSIAEILKEM-------MSYADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVV 280 (450)
T ss_pred ccchhhChhhhhcccccccCCCHHHHHHHH-------hccCcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhh
Confidence 988631 120 0100113443333332 112234788999998766 5 7777677777766655421
Q ss_pred ------cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccc---ccC
Q 037587 302 ------FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLL---VSN 372 (464)
Q Consensus 302 ------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~---~~~ 372 (464)
++..+.-...+++..|...-- ..+.++.. ...++|.+.|.+.|+++..|.+|.-++++....+ ...
T Consensus 281 ~eG~~tyGgla~r~~~ala~gL~e~~~-~~y~~~r~----~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~ 355 (450)
T TIGR02618 281 FEGMPSYGGLAGRDMEAMAIGIREAVD-YEYIEHRV----KQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQD 355 (450)
T ss_pred cCCccccCchhhhhHHHHHHHHHHhhh-HHHHHHHH----HHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChh
Confidence 122232233333333332110 12233222 2356788889888999977777778999875432 112
Q ss_pred ChhHHHHHHHHHHHhcCeEEe-CCCCCCCCC----------CCeEEEEeec--CCHHHHHHHHHHHHHHHHhhCc
Q 037587 373 TFEAEKELWKKIIFEVGLNIS-PGSSCHCNE----------PGWFRICFAN--ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~-pg~~f~~~~----------~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
. .....++..|..+.||--. -|+...... -..+|+++.. -|.+.++...++|..+.++...
T Consensus 356 ~-~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 429 (450)
T TIGR02618 356 Q-FPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD 429 (450)
T ss_pred h-ChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence 2 2344678888888898754 333211111 2479999976 4889999999999998877663
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-17 Score=163.50 Aligned_cols=275 Identities=13% Similarity=0.132 Sum_probs=175.0
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCC---CeEEEcCCCCCChhh----hcccCCCcEE----EEEecCCCCCcccCHHH
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLADPG---DAFLLPTPYYPGFDR----DLKWRPGVEI----VPIHCSSSNGFRITISA 175 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~~~g---d~Vlv~~p~y~~~~~----~~~~~~g~~~----~~v~~~~~~~~~~d~~~ 175 (464)
+++++|++|+|+++++..++.+++++| +.|++....|+.... .++.. |+++ +.++.+ .++.++++.
T Consensus 84 ~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~-g~~~~~~~~~~~~~--~~g~~~~~~ 160 (406)
T TIGR01814 84 AKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLH-GLTVEESMVQIEPR--EEETLRLED 160 (406)
T ss_pred CCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhc-CCCcccceEEeccC--CCCccCHHH
Confidence 688999999999999999999887664 368888888987322 23344 8776 455543 345678899
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCc
Q 037587 176 LENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNI 255 (464)
Q Consensus 176 l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~ 255 (464)
+++.++. .++++++|++++++|.||..++ +++|.++|+++|+++++|++++ ++.. + .++.
T Consensus 161 l~~~~~~---~~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~---~G~~--~-id~~-------- 220 (406)
T TIGR01814 161 ILDTIEK---NGDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHA---VGNV--P-LDLH-------- 220 (406)
T ss_pred HHHHHHh---cCCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEcccc---cCCc--c-cccc--------
Confidence 9888753 1347899999999999999986 7778888999999999999998 3322 1 2211
Q ss_pred CCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhcc------------------------cCCCChHHH
Q 037587 256 DESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSS------------------------FGLVSSQTQ 310 (464)
Q Consensus 256 ~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~------------------------~~~~s~~~q 310 (464)
..+..+++.|.+|+++ -+| .|..+. ++........... .++.+....
T Consensus 221 -----~~gvD~~~~s~hK~l~g~pG--~~l~v~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~ 292 (406)
T TIGR01814 221 -----DWGVDFACWCTYKYLNAGPG--AGAFVH-EKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSV 292 (406)
T ss_pred -----cCCCCEEEEcCccccCCCCC--eEEEEe-hhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHH
Confidence 2256788999999873 345 443333 3222111100000 122333343
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeeecCC----ccEEEEEecCcccccCChhHHHHHH
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-----GIRCLKSN----AGLFCWVDMRHLLVSNTFEAEKELW 381 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----g~~~~~~~----~g~f~~~~l~~~~~~~~~~~~~~l~ 381 (464)
.++.++++.-. +.-+++.+++.+...+++.+.|.+. |+++..+. .+..+.+.++ .. ..++.
T Consensus 293 ~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~--~~------~~~~~ 362 (406)
T TIGR01814 293 AALRGSLDIFD--QAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP--VP------GKAVF 362 (406)
T ss_pred HHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec--CC------HHHHH
Confidence 44443443211 1113455566666777777777664 36665432 1224555555 11 12455
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHH
Q 037587 382 KKIIFEVGLNISPGSSCHCNEPGWFRICF-AN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 382 ~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l 429 (464)
..| .++||.+... .++.+|||+ +. .++++++.++++|++++
T Consensus 363 ~~L-~~~gi~v~~~------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 363 QAL-IKRGVIGDKR------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred HHH-HHCCEEEecc------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 555 5679987532 246899998 44 79999999999998865
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=159.68 Aligned_cols=282 Identities=14% Similarity=0.082 Sum_probs=172.7
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh-hhhccc-CCCcEE--EEEecCCCCCcccCHHHHHHHHHHHhhcCC
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF-DRDLKW-RPGVEI--VPIHCSSSNGFRITISALENAYQQAQTLNL 188 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~-~~~~~~-~~g~~~--~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 188 (464)
+.+++++.|+..++.+++++||.|+++..+|.+. ...+.. ..+... ..++.+. ..+.+|++++++.+.. .
T Consensus 94 v~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~~~le~~l~~-----~ 167 (416)
T PRK13034 94 VQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDR-LTGLIDYDEVEELAKE-----H 167 (416)
T ss_pred EecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccccc-ccCCcCHHHHHHHHhh-----c
Confidence 4567889999999999999999999999998762 222221 002222 2333332 2456899999988754 1
Q ss_pred ceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEE
Q 037587 189 KVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIV 268 (464)
Q Consensus 189 ~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l 268 (464)
++++|++..+. +|... ++.+|.++|+++|+++|+|++++-..+... .... . .....+++
T Consensus 168 ~~klVi~~~~~--~g~~~---dl~~l~~la~~~g~~livD~Aha~G~~~~g--~~~~--~------------~~~~Di~~ 226 (416)
T PRK13034 168 KPKLIIAGFSA--YPREL---DFARFREIADEVGALLMVDMAHIAGLVAAG--EHPN--P------------FPHAHVVT 226 (416)
T ss_pred CCeEEEECCCc--ccccc---CHHHHHHHHHHcCCEEEEeCcccccCcccC--CCCC--C------------CCCceEEE
Confidence 56877776554 45554 567777889999999999999874333221 1000 0 11345788
Q ss_pred cCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC--CCC-hHHHHHHH-HHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037587 269 YSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG--LVS-SQTQYLLS-RMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344 (464)
Q Consensus 269 ~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s-~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (464)
.|++|.++.+. -|++++.++.+...++...... ..+ +....++. +++.. +.....+.++++.++.++|.+.
T Consensus 227 ~s~~K~l~g~~--GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~---~~~~~~~~~~~l~~~a~~l~~~ 301 (416)
T PRK13034 227 TTTHKTLRGPR--GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEA---LQPEFKTYAKQVIANAQALAEV 301 (416)
T ss_pred EeCcccCCCCC--CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHH---hChhHHHHHHHHHHHHHHHHHH
Confidence 99999993232 3888886666655544432211 111 12222221 22211 1111234567788888999999
Q ss_pred HHhCCCeeec--CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC----CCCCCeEEEEeec-----C
Q 037587 345 LKVAGIRCLK--SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH----CNEPGWFRICFAN-----I 413 (464)
Q Consensus 345 l~~~g~~~~~--~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~----~~~~~~~Ris~~~-----~ 413 (464)
|.+.|+++.. +++ ..+++.+...... . ..+...|+++||.+.+..... +..+..+|++++. .
T Consensus 302 L~~~G~~~~~~~~~t-~i~~v~~~~~~~~-----~-~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~ 374 (416)
T PRK13034 302 LKERGYDLVSGGTDN-HLLLVDLRPKGLS-----G-KDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGF 374 (416)
T ss_pred HHHcCCEeccCCCCC-cEEEEEcCCCCCC-----H-HHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCC
Confidence 9988998864 343 4666766532111 1 234445567899997421111 1124579999754 3
Q ss_pred CHHHHHHHHHHHHHHHHhhC
Q 037587 414 TEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 414 ~~e~l~~~l~~l~~~l~~~~ 433 (464)
++++++++++.|++++.+.+
T Consensus 375 ~~~di~~l~~~l~~~~~~~~ 394 (416)
T PRK13034 375 GEAEFREIANWILDVLDDLG 394 (416)
T ss_pred CHHHHHHHHHHHHHHHhcCC
Confidence 58999999999999988654
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-17 Score=163.03 Aligned_cols=295 Identities=14% Similarity=0.108 Sum_probs=184.8
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEe
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~ 162 (464)
....+++++++++++ . ++.++++|+++++.+++.++ +++||.|+++.|+|..+...+... |++++.++
T Consensus 29 ~~~~~le~~la~~~g--------~--~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~-G~~~~~~~ 97 (380)
T TIGR03588 29 PTVPAFEEALAEYVG--------A--KYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYC-GAKVDFVD 97 (380)
T ss_pred hhHHHHHHHHHHHHC--------C--CeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHc-CCEEEEEe
Confidence 346899999999986 2 34566778999999999998 789999999999999888777766 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-cCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-FDSPSS 241 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~~~~~~ 241 (464)
+++ +.+.+|++.+++.+++. ..+++++|+++ |++|... ++++|.++|+++|++||+|++++... +.+.
T Consensus 98 ~~~-~~~~~d~~~l~~~i~~~--~~~~t~~v~~~---~~~G~~~---~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~-- 166 (380)
T TIGR03588 98 IDP-DTGNIDEDALEKKLAAA--KGKLPKAIVPV---DFAGKSV---DMQAIAALAKKHGLKIIEDASHALGAEYGGK-- 166 (380)
T ss_pred cCC-CcCCcCHHHHHHHhhcc--cCCCceEEEEe---CCCCccC---CHHHHHHHHHHcCCEEEEECCCcccCccCCE--
Confidence 875 35779999999988621 01267887765 5689775 47788889999999999999998431 2222
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCC--cCCCCCccEEEEEEecCHHHHHHHHHhcccC----------------
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLS--KDFSMPGFRVGMIYSNNERVVSAATKMSSFG---------------- 303 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S--K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~---------------- 303 (464)
.... . + ...+.+.||+ |.++. | ..|+++..++.+.+.++.+....
T Consensus 167 ~~g~----~-~----------~~d~~~~S~~~~K~~~~-~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 229 (380)
T TIGR03588 167 PVGN----C-R----------YADATVFSFHPVKIITT-A-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPW 229 (380)
T ss_pred eCCC----c-c----------ccceEEEecCCCCcccc-c-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcc
Confidence 1110 0 0 1135566775 88863 3 46888887777766554432111
Q ss_pred -----------CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC-C---ccEE-EEEecC
Q 037587 304 -----------LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS-N---AGLF-CWVDMR 366 (464)
Q Consensus 304 -----------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-~---~g~f-~~~~l~ 366 (464)
.++.+..+.+...|. .+++..+.-++..+++.+.|.+. ++.+..+ . .+++ ..+.++
T Consensus 230 ~~~~~~~g~n~~m~~l~aa~g~~qL~-------~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~ 302 (380)
T TIGR03588 230 YYEQQELGFNYRMTDIQAALGLSQLK-------KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLD 302 (380)
T ss_pred eeeeeccccccCccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEEC
Confidence 011111111111121 13334444455556677777765 3443322 1 1222 223333
Q ss_pred cccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-------C--C---C-------CCeEEEEeec-CCHHHHHHHHHHHH
Q 037587 367 HLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-------C--N---E-------PGWFRICFAN-ITEETLQVALQRIK 426 (464)
Q Consensus 367 ~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-------~--~---~-------~~~~Ris~~~-~~~e~l~~~l~~l~ 426 (464)
.. . . ....++...| +++||.++.....- . . . ...+++.+.. .++++++.+++.|+
T Consensus 303 ~~-~--~-~~r~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~ 377 (380)
T TIGR03588 303 QE-F--G-CTRKEVFEAL-RAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLR 377 (380)
T ss_pred Cc-C--C-CCHHHHHHHH-HHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHH
Confidence 21 0 0 1122455655 67899887432110 0 0 0 1458887765 78999999999998
Q ss_pred HHH
Q 037587 427 VFA 429 (464)
Q Consensus 427 ~~l 429 (464)
+++
T Consensus 378 ~~~ 380 (380)
T TIGR03588 378 KVL 380 (380)
T ss_pred HhC
Confidence 864
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-17 Score=156.00 Aligned_cols=208 Identities=17% Similarity=0.240 Sum_probs=152.3
Q ss_pred CCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhccccccccccc-CC--CCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 33 HNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELAL-FQ--DYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 33 ~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
.++.+.+.|+.+.-...++.+.+++....... + .+-... |. ...+..+.|+.||++++ .++
T Consensus 39 ~~~~~~vyld~~at~p~~~~Vldam~~~~~~~-~-------~nPh~~~y~w~~~~~~E~aR~~VAklIn--------Ad~ 102 (428)
T KOG1549|consen 39 HHGTRPVYLDNQATGPMDPRVLDAMLPYLLEY-L-------GNPHSRSYGWKAEDAVEAAREQVAKLIN--------ADP 102 (428)
T ss_pred cCCCccEEEecCcCCCCCHHHHHHHHHHHHHh-h-------cCCCccccchhhhHHHHHHHHHHHHHhC--------CCC
Confidence 45567788876644334455555555432110 0 001111 22 22236788999999987 788
Q ss_pred CcEEEeCChHHHHHHHHHHhcC-CCC----eEEEcCCCCCChhhh---cccCCCcEEEEEecCCCCCcccCHHHHHHHHH
Q 037587 110 NKLVLTAGSTAANETLMFCLAD-PGD----AFLLPTPYYPGFDRD---LKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~-~gd----~Vlv~~p~y~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 181 (464)
.+|++|+|+||+++++++.+.. .+| .|++..-.|+..... +... |++++.+|.+ ++...|++.+++.|+
T Consensus 103 ~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~-g~~Vt~lpv~--~~~~~d~~~~~~~i~ 179 (428)
T KOG1549|consen 103 SDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEE-GLEVTYLPVE--DSGLVDISKLREAIR 179 (428)
T ss_pred CcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhc-CeEEEEeccC--ccccccHHHHHHhcC
Confidence 8899999999999999998743 456 888888888765444 4445 8999999987 345679999999997
Q ss_pred HHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCC
Q 037587 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261 (464)
Q Consensus 182 ~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (464)
. ++++|.+...+|-+|+++| +++|+++|++.++.+++|.+++ .+.- ..++.++
T Consensus 180 ~------~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQa---vG~i---~vDV~el------------ 232 (428)
T KOG1549|consen 180 S------KTRLVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQA---VGKI---PVDVQEL------------ 232 (428)
T ss_pred C------CceEEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhh---cCCc---cccHHHc------------
Confidence 6 9999999999999999987 6668899999999999999998 4432 2454444
Q ss_pred CCcEEEEcCCCcCCCCCccEEEEEEecC
Q 037587 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNN 289 (464)
Q Consensus 262 ~~~vi~l~S~SK~~g~~GlRiG~l~~~~ 289 (464)
+..++..|.+|+||.+| +|++++++
T Consensus 233 -n~D~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 233 -NADFLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred -CchheeeecccccCCCc--ceEEEEcc
Confidence 45567789999999999 99999864
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-17 Score=160.62 Aligned_cols=308 Identities=15% Similarity=0.141 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC-CcEEEeCChH-HHHHHHHHHhcC---CCCeEEEcCCCCCChhhhcccCCCcEEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDP-NKLVLTAGST-AANETLMFCLAD---PGDAFLLPTPYYPGFDRDLKWRPGVEIVPI 161 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~-~~i~it~G~~-~al~~~~~~l~~---~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v 161 (464)
..+...+.+.+.+..| ++. ...++++|+| .++.+++.++-. +||.|+++.-+|.....++... |++++.+
T Consensus 104 ~~l~~~~e~~~~~~~G----~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~-G~~pv~V 178 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLG----LRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTA-GFEPRVI 178 (444)
T ss_pred HHHHHHHHHHHHHHcC----CCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHc-CCeEEEe
Confidence 3444444444444444 332 3578888888 588777776642 5899999999998888888877 9999999
Q ss_pred ec-CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 162 HC-SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 162 ~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++ ..++.|.+|+++++++|.+. +++..++++++|+ ||.....+++++|.++|+++|+++|+|++|+.. ..
T Consensus 179 d~~~d~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~---~~- 249 (444)
T TIGR03531 179 ETVLDGDELTTDVEDIERAIEEI---GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQ---SN- 249 (444)
T ss_pred eeeecCcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCc---Ch-
Confidence 95 23467999999999999742 2245566777675 555556689999999999999999999999842 11
Q ss_pred CCccchhhhhh-ccCcCCCCCCCC-cEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcC
Q 037587 241 SSFISIMEAVM-DRNIDESDDLWS-RIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLS 318 (464)
Q Consensus 241 ~~~~~~~~l~~-~~~~~~~~~~~~-~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~ 318 (464)
....+.. .. ..+ ..+++.|++|.+.++|. .|.++++++.+.+.+.........+++.|.+...++.
T Consensus 250 ----~~~~~~~~g~-------~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~ 317 (444)
T TIGR03531 250 ----KYMELINKAI-------KVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLS 317 (444)
T ss_pred ----hhhhhhhccc-------cccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHH
Confidence 1111111 00 111 25667899999988776 3444476776766666543333345577777777775
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCcc-EEEEEecCcccccCChhHHHHHHHHHHHhcCeE--
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAG-LFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLN-- 391 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g-~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~-- 391 (464)
.+ .+.+++..+...++++++.+.|.++ |.++.....| .-+-+.+.... .. +...+-. +|..++|.
T Consensus 318 ~G---~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-~~---~~~~~g~-~l~~~~v~g~ 389 (444)
T TIGR03531 318 LG---SKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-GK---DPTMLGS-MLYSRRVTGP 389 (444)
T ss_pred hC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-cc---CHHHHHH-HHHhCCCCCc
Confidence 43 3556777777777778888777664 6777654333 22334443221 11 1223333 44455662
Q ss_pred --EeCCC-------C---CCCCCC----CeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 392 --ISPGS-------S---CHCNEP----GWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 392 --v~pg~-------~---f~~~~~----~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
|.||. . |+...+ .|+=++.+. +++++++.++++|.++
T Consensus 390 r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 390 RVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred eeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 45666 2 222111 144443332 6899999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-16 Score=159.99 Aligned_cols=358 Identities=11% Similarity=0.030 Sum_probs=197.2
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+. ....+...-..+....+++.+.+...
T Consensus 36 ~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~-------------~~~~~~~~~~~~~~~~la~~L~~~~~-- 100 (433)
T PRK08117 36 YYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADK-------------LMHGPSGVIYYESILKLAEELAEITP-- 100 (433)
T ss_pred EEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh-------------ccCccccccCCHHHHHHHHHHHHhCC--
Confidence 4444456678998776 3344 346677766664221 11111000113444555555544321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC--------c-----EEEEEecCCCC--
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG--------V-----EIVPIHCSSSN-- 167 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g--------~-----~~~~v~~~~~~-- 167 (464)
-..+.+++++++++++..+++... ....+|+...-+|++.........+ . .+..+|.....
T Consensus 101 --~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (433)
T PRK08117 101 --GGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRC 178 (433)
T ss_pred --CCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccc
Confidence 124589999999999999988632 2235788888888765432110001 0 11222221100
Q ss_pred Ccc--------cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 168 GFR--------ITISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 168 ~~~--------~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
.+. -+++.+++.+++.. ...++.+|++.-...-.|.+ .+.+.++++.++|++||+++|+||+|.++...+
T Consensus 179 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G 257 (433)
T PRK08117 179 PKGEDPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG 257 (433)
T ss_pred cccCchhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccc
Confidence 000 13455555554211 12356555554334556765 478889999999999999999999999743322
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRM 316 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~ 316 (464)
. .+.. +.. +...-+.||||.+| +|+++|++++++ .+.+.+.... ..+..++++++++.+.
T Consensus 258 ~--~~~~--~~~------------gv~pDi~t~sK~lg-~G~pigav~~~~-~i~~~~~~~~~~~T~~~np~~~aaa~a~ 319 (433)
T PRK08117 258 E--WFAA--QTF------------GVVPDIMTIAKGIA-SGLPLSAVVASK-ELMEQWPLGSHGTTFGGNPVACAAALAT 319 (433)
T ss_pred c--chhH--hhc------------CCCCCEeehhhhcc-CCCcceeEEEcH-HHHhhccCCCCCCCCCcCHHHHHHHHHH
Confidence 2 1111 111 11222469999999 999999999854 4444433211 1123577888887777
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEE
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKV----AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v 392 (464)
|+.-+- . ...+.+++..+++.+.|++ +++.......|+++++.+..............+...+ .++||.+
T Consensus 320 L~~l~~-~----~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~ 393 (433)
T PRK08117 320 LEVIKE-E----KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKC-LEKGLLF 393 (433)
T ss_pred HHHHHh-c----cHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHH-HHCCCEE
Confidence 663210 1 1122222333333333333 3332223345678888875321111112223455555 4679998
Q ss_pred eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 393 SPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 393 ~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+... ..+++|++++. .+++++++++++|.+++++.
T Consensus 394 ~~~g~----~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 394 YLCGN----AGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred eecCC----CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 76421 24689999754 79999999999999998754
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-16 Score=156.73 Aligned_cols=351 Identities=9% Similarity=0.052 Sum_probs=209.4
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA 116 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~ 116 (464)
..|+|-..||..++.. .+++....... -.+| .....-|.......++.....+...+.++ .+..||-.-+
T Consensus 50 ~~l~LiasEN~~s~~v-~~a~~s~l~nk--yaeg---~pg~ryy~g~~~~d~ie~l~~~ra~~lf~----a~~anvqp~S 119 (493)
T PRK13580 50 SSLKLIASENYSSLAV-QLAMGNLLTDK--YAEG---TPGHRFYAGCQNVDTVEWEAAEHAKELFG----AEHAYVQPHS 119 (493)
T ss_pred cCceEecccccCCHHH-HHHhccccccc--CcCC---CCCccccCCCchHHHHHHHHHHHHHHHhC----CCcccccCCC
Confidence 4488888888776543 33322210000 0000 00111233334445566556666666665 5666777766
Q ss_pred ChHHHHHHHHHHhcCC-------------------------------CCeEEEcCCCCCChhhhc---ccC-CCcEEEEE
Q 037587 117 GSTAANETLMFCLADP-------------------------------GDAFLLPTPYYPGFDRDL---KWR-PGVEIVPI 161 (464)
Q Consensus 117 G~~~al~~~~~~l~~~-------------------------------gd~Vlv~~p~y~~~~~~~---~~~-~g~~~~~v 161 (464)
|+. ++..++.++++| ||+|+..++..+++.... ... ...+++.+
T Consensus 120 g~~-An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y 198 (493)
T PRK13580 120 GAD-ANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSY 198 (493)
T ss_pred cHH-HHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEec
Confidence 655 666667788766 899999988776653321 111 02456666
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+++.+ ...+|++++++.+.+ +++.|+++..+|-.+ .. ++++|.++|+++|+++++|+++.-..++..
T Consensus 199 ~vd~~-~g~iD~d~l~~~~~~------~~plvii~g~S~~~~-~~---dl~~i~eia~~~gA~L~VD~AH~~Gligg~-- 265 (493)
T PRK13580 199 GVDPD-TGLLDYDEIAALARE------FKPLILVAGYSAYPR-RV---NFAKLREIADEVGAVLMVDMAHFAGLVAGK-- 265 (493)
T ss_pred ccCcc-cCccCHHHHHHHHhh------cCCEEEEeCccccCC-Cc---CHHHHHHHHHHcCCEEEEECchhhceeccc--
Confidence 66643 346899999999876 566778887777644 54 477778888899999999999986555433
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC--CCChHHHHHHHHHcCC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG--LVSSQTQYLLSRMLSD 319 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~ 319 (464)
........ .....++++|++|++ .|-+.|+++++ +.+.+.+....++. +..++..++++..+..
T Consensus 266 ~~~~~~~~-----------~~~~D~vtgT~hKaL--~GP~GG~I~~~-~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e 331 (493)
T PRK13580 266 VFTGDEDP-----------VPHADIVTTTTHKTL--RGPRGGLVLAK-KEYADAVDKGCPLVLGGPLPHVMAAKAVALAE 331 (493)
T ss_pred cchhhcCC-----------CCCCcEEEeCChhhc--cCCCeEEEEec-HHHHHHHhhCCCcccCCCccHHHHHHHHHHHH
Confidence 11100000 113457899999998 33345999985 44555554434332 1112222222222221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS-NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
......++.++++.++.+.|.+.|.+.|+.+... ..+..+++++.... .....+...|.+.||.+.+-...
T Consensus 332 --~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~------~~g~~a~~~L~e~GI~vn~i~~P 403 (493)
T PRK13580 332 --ARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFG------LTGRQAESALLDAGIVTNRNSIP 403 (493)
T ss_pred --HhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHH------HHHHHHHHHHHHCCeEEccccCC
Confidence 1011124457778888899999999999987532 22357888886421 11224555667889999754322
Q ss_pred C-CCC---CCeEEEEeec-----CCHHHHHHHHHHHHHHHHhhC
Q 037587 399 H-CNE---PGWFRICFAN-----ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 399 ~-~~~---~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~~ 433 (464)
. +.+ ...+||++.. .++++++.+++.|.++++...
T Consensus 404 tvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~~ 447 (493)
T PRK13580 404 SDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNTT 447 (493)
T ss_pred CCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhhh
Confidence 2 122 4679999865 247999999999999987653
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-16 Score=151.55 Aligned_cols=304 Identities=18% Similarity=0.256 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFD-PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~-~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v~~ 163 (464)
..+-+.+.+.+...++ .+ .+-++++.+++.+++.++.+++.|||+||+...+..+ +...++.. |++++.+..
T Consensus 37 ~~~~~~~~~~L~~v~~----t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~-g~~v~~~~~ 111 (383)
T COG0075 37 VGIMKEVLEKLRKVFG----TENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERY-GAEVVVLEV 111 (383)
T ss_pred HHHHHHHHHHHHHHhc----CCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHh-CCceEEEeC
Confidence 4444444555555444 33 3556777889999999999999999999999888543 23445555 999999887
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
.. +-.++++++++++++ ++++++|.+++.-.+||... ++++|+++|++||.++|+|.+-+ +++. ++
T Consensus 112 ~w--g~~v~p~~v~~~L~~----~~~~~~V~~vH~ETSTGvln---pl~~I~~~~k~~g~l~iVDaVsS---~Gg~--~~ 177 (383)
T COG0075 112 EW--GEAVDPEEVEEALDK----DPDIKAVAVVHNETSTGVLN---PLKEIAKAAKEHGALLIVDAVSS---LGGE--PL 177 (383)
T ss_pred CC--CCCCCHHHHHHHHhc----CCCccEEEEEeccCcccccC---cHHHHHHHHHHcCCEEEEEeccc---CCCc--cc
Confidence 63 446899999999974 45788999999999999996 57778999999999999999887 6655 21
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCC-CccEEEEEEecCHHHHHHHHH---------------h----cccC
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM-PGFRVGMIYSNNERVVSAATK---------------M----SSFG 303 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~-~GlRiG~l~~~~~~~~~~~~~---------------~----~~~~ 303 (464)
. + +.++..+++.+--|.++. || +|.+..+++.+...... + ..++
T Consensus 178 -~----v---------d~wgiDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~ 241 (383)
T COG0075 178 -K----V---------DEWGIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPY 241 (383)
T ss_pred -c----h---------hhcCccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCC
Confidence 1 1 245788899999999974 46 67777755443332111 1 1123
Q ss_pred CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ccEEEEEecCcccccCChhHHHHH
Q 037587 304 LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN---AGLFCWVDMRHLLVSNTFEAEKEL 380 (464)
Q Consensus 304 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~l 380 (464)
+++.....++..+|+.-. .+-++.+.+++++..+.+++.++.+|++.+... ..-...+.+|...+. . +.
T Consensus 242 Tppv~~i~aL~~al~~i~--~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~-----~-~~ 313 (383)
T COG0075 242 TPPVNLIYALREALDLIL--EEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDD-----K-KV 313 (383)
T ss_pred CCCHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCc-----H-HH
Confidence 344444555556655422 445778888999999999999999999887622 222344556654332 1 23
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCcc
Q 037587 381 WKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNPQ 435 (464)
Q Consensus 381 ~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~ 435 (464)
...+++++||.+.+|.. ......|||+.-. .+.+++..++.+|..++.+.+..
T Consensus 314 ~~~~~~~~g~~i~gg~~--~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~~ 367 (383)
T COG0075 314 RRALLKEYGVEIAGGQG--PLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGVK 367 (383)
T ss_pred HHHHHHhCCEEeccccc--ccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCCc
Confidence 44778888999987753 3345789998855 78999999999999999999863
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-16 Score=157.20 Aligned_cols=357 Identities=15% Similarity=0.086 Sum_probs=203.7
Q ss_pred CCCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 27 NPYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 27 ~~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
..|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ...... .....+.+..+|+.+.+...
T Consensus 26 G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~----------~~~~~~---~~~~~~~~~~lae~l~~~~~ 92 (412)
T TIGR02407 26 GSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLAD----------DGIIHS---LDMATEAKREFLETFNEIIL 92 (412)
T ss_pred cCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh----------ccceec---cccCcHHHHHHHHHHHHhcc
Confidence 345555566788998765 3333 346677777664221 001111 11124555666666654210
Q ss_pred CCCCCCCCcEEE-eCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC------------cEEEEEecCCCC
Q 037587 103 NKVKFDPNKLVL-TAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG------------VEIVPIHCSSSN 167 (464)
Q Consensus 103 ~~~~~~~~~i~i-t~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~~ 167 (464)
.+... .+.+++ +++++|++..+++... ....+|+....+|++....+....| ..++.+|.....
T Consensus 93 ~~~~~-~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~ 171 (412)
T TIGR02407 93 KPRGL-DYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYL 171 (412)
T ss_pred CccCC-CceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCcc
Confidence 00001 124656 5899999999988743 2236789888888876533221111 122233321100
Q ss_pred Cc-ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc-
Q 037587 168 GF-RITISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI- 244 (464)
Q Consensus 168 ~~-~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~- 244 (464)
.. .-+++.+++.+.+......++.+|++.-..++.|. ..|.+.+++|.++|+++|+++|+||++.++ +..+..+.
T Consensus 172 ~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~--GRtG~~~a~ 249 (412)
T TIGR02407 172 GGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGC--GRTGTFFSF 249 (412)
T ss_pred ccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC--CccchhHHh
Confidence 00 01356677766532111125666665433788898 578889999999999999999999999863 32210110
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC-ccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHH---HHH-Hc
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP-GFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYL---LSR-ML 317 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~-GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~---~~~-~l 317 (464)
....+ . +. +.+|||.+| + |+|+|+++++++ + ..+... ...+..++++..+ +.. ++
T Consensus 250 ~~~~v-----------~-PD---i~~~~K~lg-~~G~pigav~~~~~-~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i 311 (412)
T TIGR02407 250 EPAGI-----------E-PD---IVCLSKSIS-GYGLPLALTLIKPE-L-DVWKPGEHNGTFRGNNLAFVTATAALEYYW 311 (412)
T ss_pred cccCC-----------C-CC---EEEechhcc-CCccceeEEEEchh-h-hccCCCccCCCCCccHHHHHHHHHHHHHHh
Confidence 00111 1 22 337899998 7 999999999554 3 322211 1112244553333 223 35
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCC
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~ 397 (464)
.++.+ .++++++.+.++++.+.+.+.+.. +.......|+++|+.++.. ....++...++ ++||++.+...
T Consensus 312 ~~~~l-~~~~~~~g~~l~~~l~~l~~~~~~--~~~~vrg~Gl~~~l~l~~~------~~~~~~~~~~~-~~Gv~v~~~~~ 381 (412)
T TIGR02407 312 SDDAF-EKAVQRKSEIIQERLDRIVAEYPE--LIKQVRGRGLMQGIECGDG------DLAGKIAKAAF-ENGLIIETSGP 381 (412)
T ss_pred cccHH-HHHHHHHHHHHHHHHHHHHhhCCC--ceEeeecceeEEEEEecCh------HHHHHHHHHHH-HCCCEEeccCC
Confidence 55544 555666666666665544443322 2233345688999999742 11224556654 67999987532
Q ss_pred CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 398 CHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 398 f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+ .+.+|++.+. ++++++++++++|++++++
T Consensus 382 ~----~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 382 N----DEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred C----CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 2 4579999987 7999999999999998853
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=149.74 Aligned_cols=331 Identities=15% Similarity=0.131 Sum_probs=205.1
Q ss_pred EEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCCh
Q 037587 39 IQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGS 118 (464)
Q Consensus 39 i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~ 118 (464)
++|..+.-.-+.+.+.+++.+... .....| |.++..+++.+++.+.++ ...++++.++
T Consensus 2 ~~f~SDn~~g~~~~m~eam~~a~~------------~~~~~Y----G~D~~~~~~e~~~ae~~g------~~a~~Fv~sG 59 (342)
T COG2008 2 IDFRSDNVAGPTPEMREALAAANA------------VGDDVY----GEDPTTNALEQRIAELFG------KEAALFVPSG 59 (342)
T ss_pred CccccCccCCCCHHHHHHHHhccc------------cCCCCC----CCCHHHHHHHHHHHHHhC------CceEEEecCc
Confidence 344444434456667776665310 122345 445555666666555443 3789999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChhhh--cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEe
Q 037587 119 TAANETLMFCLADPGDAFLLPTPYYPGFDRD--LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT 196 (464)
Q Consensus 119 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~ 196 (464)
|+++.+++.+.++||+.|++..-.|-...+. .....+ ..+++..+..+..+++++++..+.........+.++++.
T Consensus 60 T~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~--~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e 137 (342)
T COG2008 60 TQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGG--GQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLE 137 (342)
T ss_pred cHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHcC--CceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEe
Confidence 9999999999999999999998887543332 112212 233444444456799999999887622133345556666
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC
Q 037587 197 NPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS 276 (464)
Q Consensus 197 ~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g 276 (464)
|.+|-.|.++|.+++++|.++|+++|+.+..|.+-........ . ++...+.. ....+.-++||..+
T Consensus 138 ~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~val--g-~~~~~~~~-----------~~D~v~~~~tK~g~ 203 (342)
T COG2008 138 NTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVAL--G-VALKTIKS-----------YVDSVSFCLTKGGG 203 (342)
T ss_pred eccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHc--C-CCHHHHHh-----------hCCEEEEecccCCc
Confidence 6666889999999999999999999999999997641111111 1 23444432 33455668999876
Q ss_pred CCccEEEEEEecCHHHHHHHHHhc-cc---CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 037587 277 MPGFRVGMIYSNNERVVSAATKMS-SF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR 351 (464)
Q Consensus 277 ~~GlRiG~l~~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 351 (464)
.+ +|.|+.-+..+.+.++..+ .. ..-+.+..+....+|++.-|.. .-..-.+...+|.+.|... |++
T Consensus 204 ~~---~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~-----~~~Han~mA~~La~~~~~~~G~~ 275 (342)
T COG2008 204 AP---VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRL-----AADHANAMAARLAEGLEAKPGVK 275 (342)
T ss_pred ce---eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHH-----HHHHHHHHHHHHHHhhhhcCCce
Confidence 55 4887765666555443222 22 2223345555556676654411 1111122356788888854 988
Q ss_pred eec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 352 CLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 352 ~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
+.. +++| .+++++++..- ....+ ...+...|+.+.++. ..+|+..++ ++++++++++..++.++
T Consensus 276 ~~~~~~tN-~vf~~l~~~~i-----~~l~~-~~~~~~~~~~~~~~~-------~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 276 LAFPVETN-MVFVRLPESAI-----EALRL-AGALFYRGVLIGAHG-------EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred eccCCccc-EEEEECChHHH-----HHHHh-hchhheeeeeccCCC-------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 865 5776 88899985211 11111 112234455554322 369999988 89999999999988764
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-16 Score=152.40 Aligned_cols=326 Identities=15% Similarity=0.146 Sum_probs=213.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh-cccCCCcE
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD-LKWRPGVE 157 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~~g~~ 157 (464)
.|.......+|.++++++++ .+.++.++.++.++.+++...+++||.| +..+|...... +... |+.
T Consensus 73 ~Yagd~s~~~LE~~vAe~lG----------~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~-Ga~ 139 (460)
T PRK13237 73 AYAGSRNFYHLEETVQEYYG----------FKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELN-GGI 139 (460)
T ss_pred hhcCCCcHHHHHHHHHHHHC----------CCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhC-CcE
Confidence 47766778999999999986 3468999999999998877778999965 44444323222 4444 776
Q ss_pred EEEEecC--------CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHHhhCCeEEEEe
Q 037587 158 IVPIHCS--------SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL-GTAMTHQELNHLINFSKSKRIHIVSD 228 (464)
Q Consensus 158 ~~~v~~~--------~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPt-G~~~s~~~l~~i~~~~~~~~~~lI~D 228 (464)
.+-+..+ ....+.+|++.+++.|++. ...+++++.+.+++|.. |...|.++++++.++|+++|+.+|+|
T Consensus 140 fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~--~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D 217 (460)
T PRK13237 140 FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEV--GAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD 217 (460)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhccc--cCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence 5555322 1235789999999999742 12355667788888888 79999999999999999999999999
Q ss_pred cccccc--ccC---CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc-
Q 037587 229 EIYSGT--VFD---SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF- 302 (464)
Q Consensus 229 eay~~~--~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~- 302 (464)
.+.... +|- .....-.++.+++.++ -.-...++.|++|.++.+- -|+++.+++.+.+.++.+...
T Consensus 218 aAra~gna~fI~~re~~y~~~~i~ei~~e~-------~s~aD~~t~S~~K~~~~~~--GG~i~t~D~eL~~~~r~~~~~~ 288 (460)
T PRK13237 218 ATRCVENAYFIKEREEGYQDKSIKEIVHEM-------FSYADGCTMSGKKDCLVNI--GGFLAMNDEELFDEAKELVVVY 288 (460)
T ss_pred CcchhcChhhhcccccccCCCcHhHHhhhc-------cCcCcEEEEeCCCCCCCCC--ceEEEECCHHHHHHHHHhcccc
Confidence 988622 010 0100112333333332 1123455678999987551 389999888888877665321
Q ss_pred ------CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcc---cccCC
Q 037587 303 ------GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHL---LVSNT 373 (464)
Q Consensus 303 ------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~---~~~~~ 373 (464)
+..+.-...+++.-|.+.-- .++++.+.. ..++|.+.|.+.|+++..|.+|.-++++.... +....
T Consensus 289 eG~~tygg~~grd~~alAvgl~E~~~-~~y~~~ri~----~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~ 363 (460)
T PRK13237 289 EGMPSYGGMAGRDMEAMAIGIEESVQ-YEYIEHRVG----QVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQ 363 (460)
T ss_pred CCCcCCCChhhhHHHHHHhHHHhhch-HHHHHHHHH----HHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCccc
Confidence 22222233333333332111 234444443 44678899999999999999998888876542 11122
Q ss_pred hhHHHHHHHHHHHhcCeEEe-CCCC-CCCC----C-----CCeEEEEeec--CCHHHHHHHHHHHHHHHHhhCc
Q 037587 374 FEAEKELWKKIIFEVGLNIS-PGSS-CHCN----E-----PGWFRICFAN--ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 374 ~~~~~~l~~~ll~~~gI~v~-pg~~-f~~~----~-----~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.....++..|..+.||--. -|+. ++.+ . -..+|+++.. -|.+.++...++|..+.++...
T Consensus 364 -~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 436 (460)
T PRK13237 364 -FPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED 436 (460)
T ss_pred -ChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence 2344678888888898754 2332 1111 0 2469999976 4889999999999998877663
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-16 Score=150.13 Aligned_cols=338 Identities=16% Similarity=0.192 Sum_probs=210.6
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+....|||..+ .|.+ ++|.+.++++++.+.. -..++ .-+.+.+.++|+.+.+..
T Consensus 35 ~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl----------~h~sn----~~~~~~~~~la~~L~~~s--- 97 (404)
T COG4992 35 YVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKL----------WHVSN----LFYNEPQAELAEKLVELS--- 97 (404)
T ss_pred EEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHh----------hhccc----ccCChHHHHHHHHHHhhC---
Confidence 4455677788998764 5555 4577888877753321 11111 112566677777776431
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc---C-C-CCeEEEcCCCCCChhhhcccCCCcEEEE----EecCCC---CCcccC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA---D-P-GDAFLLPTPYYPGFDRDLKWRPGVEIVP----IHCSSS---NGFRIT 172 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~---~-~-gd~Vlv~~p~y~~~~~~~~~~~g~~~~~----v~~~~~---~~~~~d 172 (464)
+ ..+.|+++|+++||++.++.... . + ..+|+....+|++-.-..-.. +-+..+ -|+.+. -.|+ |
T Consensus 98 -~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~-t~~~ky~~~F~Pl~~g~~~vpfn-D 173 (404)
T COG4992 98 -P-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSA-TGQPKYRKGFGPLLPGFRHVPFN-D 173 (404)
T ss_pred -c-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeec-cCChhhccCCCCCCCCceecCCC-C
Confidence 1 37899999999999999998742 2 2 237888888876543222111 111100 011110 0111 7
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhh
Q 037587 173 ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVM 251 (464)
Q Consensus 173 ~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~ 251 (464)
++++++++++ ++.+|++---.--.|.+. +.+-++++.++|++||+++|.||+..++.-.+. +...-
T Consensus 174 i~al~~ai~~------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk------~fA~e- 240 (404)
T COG4992 174 IEALEAAIDE------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK------LFAYE- 240 (404)
T ss_pred HHHHHHHhcc------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch------HHHHH-
Confidence 8999999976 788777764477788765 455699999999999999999999987432222 11110
Q ss_pred ccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcC---CchhhHHH
Q 037587 252 DRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLS---DKKFTCNY 326 (464)
Q Consensus 252 ~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~---~~~~~~~~ 326 (464)
..+..--+-++.|.+| .|+.||.+++. +.+...+..- .+.+..|+++.+++.++++ ++++
T Consensus 241 ---------~~gV~PDI~tlaK~Lg-GG~PigA~la~-~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~l---- 305 (404)
T COG4992 241 ---------HYGVEPDILTLAKALG-GGFPIGAMLAT-EEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGL---- 305 (404)
T ss_pred ---------HhCCCCCEEEeecccc-CCccceeeEEc-hhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhH----
Confidence 1122223458999999 99999999995 4444433221 1223367777777666554 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----C-CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 037587 327 MKENRKRLRKRKEMLVSGLKVA----G-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN 401 (464)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~~----g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~ 401 (464)
+++ .+++-++|.+.|.++ + ++-.. .-|+++-+.+..... ..+++..+ .++||++.+..
T Consensus 306 l~~----v~~~g~~~~~~L~~l~~~~~~v~~vR-G~GLmiGiel~~~~~------a~~~~~~~-~~~gvL~~~a~----- 368 (404)
T COG4992 306 LEN----VREKGEYLLQRLRELKRRYPLVKEVR-GRGLMIGIELKEPYR------ARDIVRAL-REEGVLVLPAG----- 368 (404)
T ss_pred HHH----HHHHHHHHHHHHHHHhhcCCceeeee-cceeEEEEEecCccc------HHHHHHHH-HHCCeEEecCC-----
Confidence 333 233444455555543 2 12223 336888888875431 12355555 57799998653
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 402 EPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 402 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++.+|+.... +++|++++++++|++++++..
T Consensus 369 -~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 369 -PNVIRFLPPLVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred -CCeEEecCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 5689999887 799999999999999998654
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-15 Score=152.64 Aligned_cols=356 Identities=12% Similarity=0.067 Sum_probs=199.5
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+ ....+.......+.+..+|+.+.+...
T Consensus 49 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~~~~~~~~~~la~~l~~~~p-- 113 (443)
T PRK06058 49 IVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVA-------------RFTHTCFMVTPYEGYVAVAEQLNRLTP-- 113 (443)
T ss_pred EEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHH-------------hccCccccccCCHHHHHHHHHHHHhCC--
Confidence 3444556678898765 2333 34667777666422 222222222235666777777765422
Q ss_pred CCCC-CCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChhhhcccCCC--------c-----EEEEEecC--CC
Q 037587 105 VKFD-PNKLVLTAGSTAANETLMFCL--ADPGDAFLLPTPYYPGFDRDLKWRPG--------V-----EIVPIHCS--SS 166 (464)
Q Consensus 105 ~~~~-~~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~~g--------~-----~~~~v~~~--~~ 166 (464)
.. .+.+++++++++++..+++.. ....++|+...++|++....+....+ . .+..++.. ..
T Consensus 114 --~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (443)
T PRK06058 114 --GDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYR 191 (443)
T ss_pred --CCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccc
Confidence 11 247889999999999998842 12347899999999887633221101 0 11222211 00
Q ss_pred C--CcccCH-HHHHHHHHHHhh--cCCceEEEEEeCCCCCCC-CC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 167 N--GFRITI-SALENAYQQAQT--LNLKVKGVLITNPSNPLG-TA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 167 ~--~~~~d~-~~l~~~i~~~~~--~~~~~~~vil~~P~NPtG-~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
+ .+..+. +.+++.++.... ...++.+|+ ..|-+..| .. .+.+.+++|.++|++||+++|.||++.++...+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~ 270 (443)
T PRK06058 192 DPKGLATDGEEAAARAITVIEKQVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA 270 (443)
T ss_pred cccccccchHHHHHHHHHHHHHhhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh
Confidence 0 000111 222222222111 123566554 66866554 43 4577899999999999999999999987533222
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHc
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRML 317 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l 317 (464)
.+ . .+.. + ..+.++ +++|.+| .|+++|+++++ +.+.+.+.... ..+..++++++++.+.|
T Consensus 271 --~f-a-~~~~-g--------v~PDiv---~~gK~l~-~G~Pi~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L 332 (443)
T PRK06058 271 --WF-A-CEHE-G--------IVPDLI---TTAKGIA-GGLPLSAVTGR-AEIMDAPHPGGLGGTYGGNPVACAAALAAI 332 (443)
T ss_pred --hh-H-HHhc-C--------CCCCEE---EEccccc-CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHH
Confidence 11 1 1111 1 112333 6689999 99999999994 44544443221 22346788888888777
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHh----CCCee-ecCCccEEEEEecCccc-ccCChhHHHHHHHHHHHhcCeE
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKV----AGIRC-LKSNAGLFCWVDMRHLL-VSNTFEAEKELWKKIIFEVGLN 391 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~-~~~~~g~f~~~~l~~~~-~~~~~~~~~~l~~~ll~~~gI~ 391 (464)
+.-. + +...+..+++.+++.+.|++ +++.. ..+.| .++.+.+.... ...+......++..++ ++||+
T Consensus 333 ~~~~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G-~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~ 405 (443)
T PRK06058 333 ETIE--E---DDLVARARQIEALMTDRLRALAAEDDRIGDVRGRG-AMIAIELVKPGTTEPDAELTKALAAAAH-AAGVI 405 (443)
T ss_pred HHHH--H---cCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccc-eEEEEEEecCCCCCCcHHHHHHHHHHHH-HCCeE
Confidence 5311 1 11223333344445555544 23211 23444 56666663211 1111112234555554 67999
Q ss_pred EeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 392 ISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 392 v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+.|+..|+ +++|+.... ++++++++++++|++++++
T Consensus 406 ~~~~~~~~----~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 406 VLTCGTYG----NVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred EeccCCCC----CEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 99875543 589998665 7999999999999999865
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-15 Score=155.47 Aligned_cols=289 Identities=14% Similarity=0.118 Sum_probs=176.8
Q ss_pred CCCCcEEEe---CChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccC---------CCcEEEEEecCCCCCcccCHH
Q 037587 107 FDPNKLVLT---AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR---------PGVEIVPIHCSSSNGFRITIS 174 (464)
Q Consensus 107 ~~~~~i~it---~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~---------~g~~~~~v~~~~~~~~~~d~~ 174 (464)
++++++.++ +|+++++..++.+++++||.|++....++......... .+.++..++.+. +..+|++
T Consensus 95 a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~id~~ 172 (452)
T PTZ00094 95 LDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE--KGLIDYD 172 (452)
T ss_pred CCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC--CCCcCHH
Confidence 567777666 78999999999999999999999877776654432111 013344555553 3568999
Q ss_pred HHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccC
Q 037587 175 ALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRN 254 (464)
Q Consensus 175 ~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~ 254 (464)
+|++.++.. +++++++. ++.+|...+ +++|.++|+++|+++++|++++....... .....
T Consensus 173 ~L~~~l~~~-----~~~lvi~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~--~~~~~-------- 232 (452)
T PTZ00094 173 KLEELAKAF-----RPKLIIAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAG--VLPSP-------- 232 (452)
T ss_pred HHHHHHHHh-----CCCEEEEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCC--CCCCC--------
Confidence 999998642 56666654 345898876 55566778899999999999984333221 00000
Q ss_pred cCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc----ccC--CCChHHHHHHHHHcCCchhhHHHHH
Q 037587 255 IDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS----SFG--LVSSQTQYLLSRMLSDKKFTCNYMK 328 (464)
Q Consensus 255 ~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~----~~~--~~s~~~q~~~~~~l~~~~~~~~~~~ 328 (464)
.....+++.|++|+++ |.+.|+++++++.......... +.+ +.+.....++..+++.-. ....+
T Consensus 233 ------~~~~D~l~~S~hK~l~--GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~--~~~~~ 302 (452)
T PTZ00094 233 ------FPYADVVTTTTHKSLR--GPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQ--SPEWK 302 (452)
T ss_pred ------CCCCcEEEcCCccCCC--CCCceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHh--ChhHH
Confidence 1134577899999872 2334888775432211111111 111 222233333333333211 12244
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCCc-cEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe-CCCCCCC--CCCC
Q 037587 329 ENRKRLRKRKEMLVSGLKVAGIRCLKSNA-GLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS-PGSSCHC--NEPG 404 (464)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~-pg~~f~~--~~~~ 404 (464)
+.++++.+..+++.+.|.+.|+++..+.. ....++.+.... .. . +.+..+|+++||.+. ++..+.. ..++
T Consensus 303 ~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~----~~-~-~~~~~~L~~~gI~vs~~~~p~~~~~~~~~ 376 (452)
T PTZ00094 303 EYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFG----IT-G-SKMEKLLDAVNISVNKNTIPGDKSALNPS 376 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcCC----CC-H-HHHHHHHHHCCcEEecccCCCCCcCCCCC
Confidence 56677788888899999888887764221 223445553211 01 1 234555677899994 4443321 1357
Q ss_pred eEEEEeec-CC----HHHHHHHHHHHHHHHHhhC
Q 037587 405 WFRICFAN-IT----EETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 405 ~~Ris~~~-~~----~e~l~~~l~~l~~~l~~~~ 433 (464)
++|+++.. .+ +++++.+++.|.++++..+
T Consensus 377 ~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~~ 410 (452)
T PTZ00094 377 GVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQ 410 (452)
T ss_pred eEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHHh
Confidence 89999966 33 8999999999999998654
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-15 Score=147.91 Aligned_cols=360 Identities=13% Similarity=0.082 Sum_probs=212.2
Q ss_pred CCCCCCCCCceEEeeccccc--c--cHHHHHHHHHhhhhhHHhhhccccccc-ccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 28 PYDQLHNPSGIIQMGLAENQ--L--SFDLLESWLASNQEAVELKRNGESLFR-ELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
.|..+.....+|||..+.+- + ..|.+.++++++.+. +. ...+|..+ +....+|+.+....
T Consensus 48 ~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~----------~~h~~~~~~~~----e~~v~~ae~L~~~~- 112 (447)
T COG0160 48 AYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAK----------LNHTHTRDLYY----EPYVELAEKLTALA- 112 (447)
T ss_pred CEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHH----------hhcccCCcccc----hhHHHHHHHHHHhC-
Confidence 35555667788999985443 3 357777777775332 11 12233222 44455555554331
Q ss_pred CCCCC-CCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChhhhcccCC-------------CcEEEEEecC--
Q 037587 103 NKVKF-DPNKLVLTAGSTAANETLMFCL--ADPGDAFLLPTPYYPGFDRDLKWRP-------------GVEIVPIHCS-- 164 (464)
Q Consensus 103 ~~~~~-~~~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~~-------------g~~~~~v~~~-- 164 (464)
+- ....++++++++++++.+++.. ......|+...-.|++.......+. .-.+..+|.+
T Consensus 113 ---p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~ 189 (447)
T COG0160 113 ---PGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNP 189 (447)
T ss_pred ---CcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCcc
Confidence 12 3467999999999999999874 2334678888888866433211110 1124444432
Q ss_pred CCCCccc--------CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 165 SSNGFRI--------TISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 165 ~~~~~~~--------d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
.-+.|.. ..+.++..+........++.++|+-.-..-.|.+ .|.+.++++.++|++||+++|+||+..+
T Consensus 190 yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG-- 267 (447)
T COG0160 190 YRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTG-- 267 (447)
T ss_pred ccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--
Confidence 2122221 2334455444433344567766665447777765 5666799999999999999999999998
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHH-HHhcccCCCChHHHHHHH
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA-TKMSSFGLVSSQTQYLLS 314 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~-~~~~~~~~~s~~~q~~~~ 314 (464)
|+..+ ++..+-.. +.+.-+-++||.+| .|+.+|.++.+++ +.... ......+..|+++.+++.
T Consensus 268 ~GRTG-~~fa~E~~-------------gv~PDivt~aK~ig-~G~Pl~avv~r~e-i~~~~~g~~~~Tf~GNpva~Aaa~ 331 (447)
T COG0160 268 FGRTG-KMFAFEHF-------------GVEPDIVTLAKSLG-GGLPLSAVVGRAE-IMDWPPGGHGGTFGGNPVACAAAL 331 (447)
T ss_pred CCccc-cchhhhhc-------------CCCCCEEEeccccc-CCCceeEEeccHH-hcccCCcccCCCCCcCHHHHHHHH
Confidence 44331 22222111 22222449999999 7999999999544 43322 222333456777777777
Q ss_pred HHcCC---chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccc--cCChhHHHHHHHHHHHhcC
Q 037587 315 RMLSD---KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV--SNTFEAEKELWKKIIFEVG 389 (464)
Q Consensus 315 ~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~--~~~~~~~~~l~~~ll~~~g 389 (464)
+.|+- ..+ .++..++-+.++++...+.+.....| . .-.-|+++-+++-..-. .++......++.+++ ++|
T Consensus 332 AvL~vie~e~L-~~~a~~~G~~l~~~L~~l~~~~~~Ig-d--VRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~-~~G 406 (447)
T COG0160 332 AVLDVIEEENL-LERAAELGEYLRDRLEELQEKHPLIG-D--VRGLGLMIGVELVKDRDTKEPDAELAAKIVARAF-ERG 406 (447)
T ss_pred HHHHHHHHccH-HHHHHHHHHHHHHHHHHHHhhcCcee-c--ccccceEEEEEEecCCCCCCCCHHHHHHHHHHHH-HcC
Confidence 76662 222 33333333444444333333222111 1 11336888888864321 122233445666665 679
Q ss_pred eEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 390 LNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 390 I~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+++..+..+ .+.+||.... +++++++.+++.|.++++..
T Consensus 407 lil~~~G~~----~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 407 LLLLTCGPH----GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred CEEeccCCC----CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 998876544 4689999877 79999999999999998764
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-15 Score=153.14 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
...|.+.+|++.+ .+..++++++++++..++.+++++||.|+++.++|.+.... +... |++++.+
T Consensus 65 ~~~le~~lA~l~g----------~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~-G~~v~~v 133 (427)
T PRK05994 65 NAVLEERVAALEG----------GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSF-GWQVRWA 133 (427)
T ss_pred HHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhc-CcEEEEE
Confidence 4677888888864 23467888899999999999999999999999999864332 4445 9998888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++.+++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+.. +...
T Consensus 134 d~~-------d~~~l~~ai~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~-~~~~-- 194 (427)
T PRK05994 134 DAD-------DPASFERAITP------RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASP-YLIR-- 194 (427)
T ss_pred CCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccc-ccCC--
Confidence 742 67888888754 7899999999999999986 677888899999999999999732 1111
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEe
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS 287 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~ 287 (464)
+ + ..+..+++.|++|.+|-+|-.+|.++.
T Consensus 195 ---p---l-----------~~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 195 ---P---I-----------EHGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred ---c---c-----------ccCCcEEEEcCccccCCCCCcEEEEEE
Confidence 1 1 114457889999999756655665544
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-15 Score=151.47 Aligned_cols=349 Identities=14% Similarity=0.089 Sum_probs=196.6
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+ ..|.+.+++.++.+ .........-..+.+..+|+.+.+...
T Consensus 34 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~~~~~~~~~~la~~l~~~~p- 99 (423)
T PRK05964 34 AYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLD-------------RLDHVIFAGFTHEPAERLAQRLVALTP- 99 (423)
T ss_pred cEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHh-------------hCCCccccccCCHHHHHHHHHHHHhCC-
Confidence 35445566788999765 4444 34666776666422 111100001123555667777654321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC-------C-CCeEEEcCCCCCChhhhcccCCCc------------EEEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD-------P-GDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~ 163 (464)
-..+.++++++++|++..+++.... + ..+|+...-+|++.........+- .+..++.
T Consensus 100 ---~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~ 176 (423)
T PRK05964 100 ---GGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPF 176 (423)
T ss_pred ---CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCC
Confidence 1236899999999999999886421 2 357888888887754322111011 1122222
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeC-CCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITN-PSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~-P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
...+....+++.+++.+.+ .+.++.+|++.. .++..|... +.+.+++|.++|++||+++|+||++.++...+.
T Consensus 177 ~~~d~~~~~~~~l~~~l~~---~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-- 251 (423)
T PRK05964 177 PPDGYEQATLDALEALLEK---HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT-- 251 (423)
T ss_pred CcchhHHHHHHHHHHHHHh---CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc--
Confidence 2111011126677776653 234666666543 266778765 889999999999999999999999987422221
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh--------cccCCCChHHHHH
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM--------SSFGLVSSQTQYL 312 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~--------~~~~~~s~~~q~~ 312 (464)
.+ . .+.. +...-+.++||.++ .| +++|++++ ++.+.+.+... ...+..++++..+
T Consensus 252 ~~-a-~~~~------------~v~pDi~~~~K~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aa 315 (423)
T PRK05964 252 LF-A-CEQA------------GVSPDIMCLSKGLT-GGYLPLAATLC-TAEIFEAFYSDDRAKAFMHSPSYTANPLACAA 315 (423)
T ss_pred hh-H-HHhc------------CCCCCeeeeehhhh-cCcccceEEEE-cHHHHHhhhcCCcccccccCCCCCcCHHHHHH
Confidence 11 1 1111 11112348899997 55 89999888 55555544321 1112346666666
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCee---ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhc
Q 037587 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRC---LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEV 388 (464)
Q Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~---~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~ 388 (464)
+.+.++--+- .++.++ +.+.-+++.+.|+++ +.+. ... -|+++.+.+..... . .....+...++ ++
T Consensus 316 a~a~l~~l~~-~~~~~~----~~~~g~~l~~~l~~l~~~~~i~~vrg-~Gl~~~i~l~~~~~--~-~~~~~l~~~l~-~~ 385 (423)
T PRK05964 316 ANASLDLFED-EPVLER----VAALSAGLAEGLEPFRDLPGVADVRV-LGAIGAVELDRPVL--E-RDGPALRAFAL-ER 385 (423)
T ss_pred HHHHHHHHHh-cCHHHH----HHHHHHHHHHHHHhhccCCCeEEeec-ccEEEEEEeccCcc--h-hHHHHHHHHHH-HC
Confidence 6665552110 111222 223333344444333 2221 222 35566677753210 0 11234566654 67
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 389 GLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 389 gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
||.+.+.. +.+|++... .++++++.++++|++++++
T Consensus 386 Gv~v~~~~-------~~lR~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 386 GVLLRPLG-------NTIYLMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred CeEEEecC-------CEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence 99998631 369999876 7999999999999999875
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=150.74 Aligned_cols=340 Identities=16% Similarity=0.145 Sum_probs=195.0
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.+.... .. +.......++...+|+++.+..
T Consensus 29 ~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~-------------~~-~~~~~~~~~~~~~la~~l~~~~--- 91 (395)
T PRK03715 29 WLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEK-------------LI-NPSPAFYNEPMAKLAGLLTQHS--- 91 (395)
T ss_pred EEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHh-------------cc-cccccccCHHHHHHHHHHhhcc---
Confidence 4434456688998753 3333 246666666654211 11 1111224677888899887431
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc------CCC-CeEEEcCCCCCChhhhcccCCCcEEEEEecCC-CCCc----ccC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA------DPG-DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS-SNGF----RIT 172 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~------~~g-d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~-~~~~----~~d 172 (464)
..+.+++++++++++..+++... .+| .+|+..+.+|++.........|.........+ ..++ ..|
T Consensus 92 ---~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d 168 (395)
T PRK03715 92 ---CFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELND 168 (395)
T ss_pred ---CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCch
Confidence 24689999999999999998864 123 57888888887754333222232211100000 0111 136
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhh
Q 037587 173 ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVM 251 (464)
Q Consensus 173 ~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~ 251 (464)
++.+++.+.+ ++.+|++...++..|... |.+.++++.++|+++|+++|+||++.+ |+..+..+ . .+..
T Consensus 169 ~~~l~~~l~~------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG--~GRtG~~~-a-~~~~- 237 (395)
T PRK03715 169 IASVEKLITD------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTG--CGRTGTLF-A-YELS- 237 (395)
T ss_pred HHHHHHHcCC------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCCCcchh-h-Hhhc-
Confidence 7888877643 566666654456666654 688899999999999999999999986 43321111 1 1111
Q ss_pred ccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-hcccCCCChHHHHHHHHHcCCchhhHHHHHHH
Q 037587 252 DRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKEN 330 (464)
Q Consensus 252 ~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 330 (464)
+ ..+. +.+|+|.+| .|+.+|.++++++ +...... ....+..++++.+++.+.|+--+ + +..
T Consensus 238 g--------v~PD---i~t~gK~lg-~G~p~~av~~~~~-i~~~~~~~~~~T~~g~pl~~aaala~L~~l~--~---~~l 299 (395)
T PRK03715 238 G--------IEPD---IMTLGKGIG-GGVPLAALLAKAE-VAVFEAGDQGGTYNGNPLMTAVGVAVISQLL--A---PGF 299 (395)
T ss_pred C--------CCCc---eeeehhhhh-CCcceEEEEEccc-cccccCCCcCCCCCCCHHHHHHHHHHHHHHH--h---ccH
Confidence 0 1112 458899998 7899999988554 3321111 11112245565555555443211 0 112
Q ss_pred HHHHHHHHHHHHHHHHh----CCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhc---CeEEeCCCCCCCCCC
Q 037587 331 RKRLRKRKEMLVSGLKV----AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEV---GLNISPGSSCHCNEP 403 (464)
Q Consensus 331 ~~~~~~~~~~l~~~l~~----~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~---gI~v~pg~~f~~~~~ 403 (464)
.+.+++.-+++.+.|++ .++.-.... |+++-+.+... . ...+ ...+.+. ||++.+.. +
T Consensus 300 ~~~~~~~g~~l~~~L~~l~~~~~i~~vrG~-Glm~~i~l~~~----~---~~~~-~~~~~~~~~~Gi~~~~~~------~ 364 (395)
T PRK03715 300 LEGVRARGEYLKEKLLELSEERGLEGERGE-GLLRALLLGKD----I---GPQI-VEKARDMQPDGLLLNAPR------P 364 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcCeEEcc-eeEEEEEecCc----h---HHHH-HHHHHhccCCCEEEeecC------C
Confidence 23333344444444443 344333333 56777877531 0 0112 2222344 99986432 3
Q ss_pred CeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 404 GWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 404 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
..+|+++.. ++++++++++++|++++++.
T Consensus 365 ~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 365 NLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 579999987 79999999999999998753
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-17 Score=142.26 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh-hhcccCCCcEEEEEecCC
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD-RDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~-~~~~~~~g~~~~~v~~~~ 165 (464)
.++++.++++++ .+.+++++++|+++++.+++.++..+|++|+++.|+|++.. ..+... |++++.++.+.
T Consensus 3 ~~~~~~l~~~~~--------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~ 73 (170)
T cd01494 3 EELEEKLARLLQ--------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELA-GAKPVPVPVDD 73 (170)
T ss_pred HHHHHHHHHHcC--------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhc-CCEEEEeccCC
Confidence 678899998874 35778999999999999999999888999999999998887 666655 99999998765
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~ 245 (464)
.+....+.+.+++.. .+.+++++++++|+||+|..++. ++|.++|+++|+++|+|++|..+..... . ..
T Consensus 74 ~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~--~-~~ 142 (170)
T cd01494 74 AGYGGLDVAILEELK-----AKPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAP--G-VL 142 (170)
T ss_pred CCccchhhhhhhhcc-----ccCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEeccccccccccc--c-cc
Confidence 433333333443332 23588999999999999998875 6777888899999999999986544321 1 00
Q ss_pred hhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEe
Q 037587 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS 287 (464)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~ 287 (464)
. . ..+..+++.|++|.+|. .++|+++.
T Consensus 143 ---~-~---------~~~~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 143 ---I-P---------EGGADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred ---c-c---------cccCCEEEEEcccccCC--CceEEEEe
Confidence 1 1 12456788999999974 67999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-15 Score=148.27 Aligned_cols=357 Identities=15% Similarity=0.092 Sum_probs=195.8
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ...... .....+.+..+|+.+.+...
T Consensus 31 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~----------~~~~~~---~~~~~~~~~~lae~l~~~~~- 96 (425)
T PRK09264 31 SWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQR----------DGITHG---LDMHTTAKREFLETFEETIL- 96 (425)
T ss_pred CEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHh----------cccccc---cccCcHHHHHHHHHHHHhhc-
Confidence 34445556778998665 2333 346677777664321 001111 01123455556665543210
Q ss_pred CCCCCCC-cEEE-eCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCC---------C---cEEEEEecCCCC
Q 037587 104 KVKFDPN-KLVL-TAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRP---------G---VEIVPIHCSSSN 167 (464)
Q Consensus 104 ~~~~~~~-~i~i-t~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~---------g---~~~~~v~~~~~~ 167 (464)
.+-..+ .+++ +++++|++..+++... ....+|+....+|++....+.... + ..+..+|.+...
T Consensus 97 -~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~ 175 (425)
T PRK09264 97 -KPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYF 175 (425)
T ss_pred -CCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCcc
Confidence 000112 5656 5899999999888642 223678888888877643211110 1 023334332100
Q ss_pred Cc-ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccc
Q 037587 168 GF-RITISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245 (464)
Q Consensus 168 ~~-~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~ 245 (464)
.. .-|++.+++.+.+......++.+|++.-...-.|. ..+.+.+++|.++|++||+++|+||++.++...+. .+ .
T Consensus 176 ~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~--~~-~ 252 (425)
T PRK09264 176 GGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT--FF-S 252 (425)
T ss_pred ccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH--HH-H
Confidence 00 02567777777542111124555555433455675 56888999999999999999999999987322221 11 1
Q ss_pred hhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHHc----CC
Q 037587 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRML----SD 319 (464)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l----~~ 319 (464)
. +.. + ..+. +.+|||.+|..|+++|+++++++ +. .+.. ....+..++++..++.+.+ .+
T Consensus 253 ~-~~~-~--------v~PD---i~t~~K~l~~~G~pigav~~~~~-i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~ 317 (425)
T PRK09264 253 F-ERA-G--------ITPD---IVTLSKSISGYGLPMALVLIKPE-LD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSD 317 (425)
T ss_pred H-hhc-C--------CCCC---EEEeccccCCCccceEEEEEchh-hh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 110 1 1122 34789999944999999999644 43 2221 1111234555555444444 33
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
+++ .++++++.+.++++.+.+.+ +++ +.......|+++++.++.. .....++..++ ++||.+.++..+
T Consensus 318 ~~l-~~~~~~~g~~l~~~l~~l~~---~~~~~~~~vrg~Gl~~~i~l~~~------~~~~~l~~~~~-~~Gv~~~~~~~~ 386 (425)
T PRK09264 318 DAF-EKEVKAKGELVRERLEEIAA---KYPGLGAEVRGRGMMQGIDFGDG------ELAGKIAAEAF-ENGLIIETSGPE 386 (425)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHH---hCCCceecceecccEEEEEecCh------HHHHHHHHHHH-HCCCEEeccCCC
Confidence 332 33444444444433322222 232 2122234578889998642 12224556654 679999875432
Q ss_pred CCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 399 HCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 399 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
...+|++... ++++++++++++|.+++++.
T Consensus 387 ----~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~ 417 (425)
T PRK09264 387 ----DEVVKLLPPLTIDEEELEEGLDILEEAVAEV 417 (425)
T ss_pred ----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3578888765 68999999999999998764
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=135.94 Aligned_cols=304 Identities=13% Similarity=0.194 Sum_probs=203.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
...+.+.+++|++ -|.+-+|+|+.++-+.++.+++++||.|++...++....-++... |+++..+|-..
T Consensus 63 I~~F~~dlaeFlg----------~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEra-gl~v~eVp~tg 131 (382)
T COG1103 63 IKDFLEDLAEFLG----------MDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERA-GLNVAEVPNTG 131 (382)
T ss_pred HHHHHHHHHHHhC----------CceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhc-CCeEEecCCCC
Confidence 4678888999986 467889999999999999999999999999999876555555555 99999999665
Q ss_pred CCCcccCHHHHHHHHHHHhhcC-CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 166 SNGFRITISALENAYQQAQTLN-LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~-~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
...|.++++...+.|++....+ ..+.+.++++|..-.|.+ .+.+.++++|+++++.++...+|. .+.- ..
T Consensus 132 ~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl---~Dakkva~ic~e~gvPlllN~AYt---~Grm---pv 202 (382)
T COG1103 132 YPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL---ADAKKVAKICREYGVPLLLNCAYT---VGRM---PV 202 (382)
T ss_pred CCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCc---hhhHHHHHHHHHcCCceEeeccee---eccc---cc
Confidence 6689999999999999877665 557888999997778877 578899999999999999999997 3322 13
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-c-------CCCChHHHHHHHHH
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-F-------GLVSSQTQYLLSRM 316 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-~-------~~~s~~~q~~~~~~ 316 (464)
+..+. ...++++|-+|+++ +.-.+|.+....+.....+++... + ..++.-... +..+
T Consensus 203 s~ke~-------------g~DFiVgSGHKsmA-As~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGap-ivTl 267 (382)
T COG1103 203 SGKEI-------------GADFIVGSGHKSMA-ASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAP-IVTL 267 (382)
T ss_pred ccccc-------------CCCEEEecCccchh-ccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCch-HHHH
Confidence 33333 56688999999997 555899988744433333332211 1 111211111 1222
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceee---cCCccEEEEEecCccc--ccCChhHHHHHHHHHHHhcCe
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCL---KSNAGLFCWVDMRHLL--VSNTFEAEKELWKKIIFEVGL 390 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~---~~~~g~f~~~~l~~~~--~~~~~~~~~~l~~~ll~~~gI 390 (464)
+.+-.++.+.+.+--+.++ ..+++...|+++| +.-. |.+.. .+.++.|... ..+....---++.. |+++||
T Consensus 268 mASfP~V~eRVkrWdeEv~-kaR~fv~elEkigg~~qlG~rPk~Hd-Lm~Fetp~f~eIakk~~r~gyFlY~E-LK~RgI 344 (382)
T COG1103 268 MASFPHVVERVKRWDEEVE-KARWFVAELEKIGGVKQLGERPKNHD-LMKFETPVFHEIAKKHKRKGYFLYEE-LKKRGI 344 (382)
T ss_pred HhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHhCCCCcccc-eeeecCchHHHHHHhCcCCceeeHHH-HHhcCc
Confidence 2232232333333333333 3467777788774 4322 22222 3444444220 00000000013334 467788
Q ss_pred E-EeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 391 N-ISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 391 ~-v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
. |.||- ..+|.+|+-.++.|+++..+++++++++++.
T Consensus 345 ~GI~~G~------Tk~~K~svyGl~~Eqve~V~~afkeI~eky~ 382 (382)
T COG1103 345 HGIQPGQ------TKYFKLSVYGLSWEQVEYVVDAFKEIAEKYG 382 (382)
T ss_pred cccccCc------eeEEEEEeecCCHHHHHHHHHHHHHHHHhcC
Confidence 7 55653 5689999977899999999999999998863
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-15 Score=149.38 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=127.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh---------cCCCCeEEEcCCCCCChhhhcccCCCc
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL---------ADPGDAFLLPTPYYPGFDRDLKWRPGV 156 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l---------~~~gd~Vlv~~p~y~~~~~~~~~~~g~ 156 (464)
..+|++++|++++ .+++++++|+++++..++.++ +++||.|+++.|+|..+...+... |+
T Consensus 65 ~~~fe~~lA~~~g----------~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~-G~ 133 (438)
T PRK15407 65 NDAFEKKLAEFLG----------VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQN-GL 133 (438)
T ss_pred HHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHc-CC
Confidence 4789999999985 246889999999999988876 478999999999999888888766 99
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV- 235 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~- 235 (464)
+++.++++. ..|.+|++.+++.+.+ ++++|+++++ +|.. .++++|.++|+++|++||+|++++...
T Consensus 134 ~pv~vdvd~-~~~~id~~~le~~i~~------~tkaVi~~~~---~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~ 200 (438)
T PRK15407 134 VPVFVDVEL-PTYNIDASLLEAAVSP------KTKAIMIAHT---LGNP---FDLAAVKAFCDKHNLWLIEDNCDALGST 200 (438)
T ss_pred EEEEEecCC-CcCCcCHHHHHHHcCc------CCeEEEEeCC---CCCh---hhHHHHHHHHHHCCCEEEEECccchhhh
Confidence 999999874 4688999999998754 7899988864 5543 468889999999999999999998322
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC--CcCCCCCccEEEEEEecCHHHHHHHHHhc
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL--SKDFSMPGFRVGMIYSNNERVVSAATKMS 300 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~--SK~~g~~GlRiG~l~~~~~~~~~~~~~~~ 300 (464)
+.+. .+.++ + .+.+.|| +|.+. .| .-|+++++++.+.+.++.+.
T Consensus 201 ~~g~-----~~G~~-------------g-d~~~fSf~~~k~~~-~g-eGG~l~t~d~~l~~~~~~~~ 246 (438)
T PRK15407 201 YDGR-----MTGTF-------------G-DIATLSFYPAHHIT-MG-EGGAVFTNDPLLKKIIESFR 246 (438)
T ss_pred cCCe-----eeecc-------------C-ceEEEeCCCCCCcc-cc-CceEEEECCHHHHHHHHHHH
Confidence 2211 11111 1 2345566 46664 33 25999998888877655443
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-14 Score=145.90 Aligned_cols=359 Identities=13% Similarity=0.048 Sum_probs=196.8
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+ ..|.+.+++.++.. .........-..+.+..+|+.+.+....
T Consensus 31 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~-------------~~~~~~~~~~~~~~~~~lae~L~~~~p~ 97 (442)
T TIGR00709 31 CWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQ-------------SGLPLHTLDLTTPLKDAFIEALLNIIPK 97 (442)
T ss_pred cEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHH-------------hccCccccccCcHHHHHHHHHHHHhCCC
Confidence 35555566788999765 3333 34667776666422 1110100011245666677776653210
Q ss_pred CCCCCCCc-EEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc------------EEEEEecCCCCC
Q 037587 104 KVKFDPNK-LVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCSSSNG 168 (464)
Q Consensus 104 ~~~~~~~~-i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~~~~~ 168 (464)
. ..... ++.+++++|++..+++... ....+|+...-+|++....+....|. .+..++.. +.
T Consensus 98 ~--~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~--~~ 173 (442)
T TIGR00709 98 R--KMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYP--HE 173 (442)
T ss_pred c--CCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCC--cc
Confidence 0 01124 4556899999999988642 22367888888888765443222120 12222221 11
Q ss_pred ccc--------CHHH----HHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 169 FRI--------TISA----LENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 169 ~~~--------d~~~----l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
+.. +.+. +++.+........++.+|++... +|+.....|.+.++++.++|+++|+++|.||++.++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfG 253 (442)
T TIGR00709 174 YRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFG 253 (442)
T ss_pred ccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 111 1122 23333221111235666666544 4554456899999999999999999999999999854
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH-HhcccCCCChHHHHHHH
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT-KMSSFGLVSSQTQYLLS 314 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~-~~~~~~~~s~~~q~~~~ 314 (464)
..+. +.....+ . ..+.++ ++||.+| .|+++|+++++++ +..... .....+..++++++++.
T Consensus 254 RtG~---~~a~~~~-g---------v~PDiv---~~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~ 315 (442)
T TIGR00709 254 RSGT---MFAFEHA-G---------IEPDFV---VMSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGT 315 (442)
T ss_pred CCCc---hhHHHHc-C---------CCCcEE---EEccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHH
Confidence 3332 1221111 1 112333 3899999 5999999999654 422211 11122346778888877
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCccEEEEEecCccccc------C--ChhHHHHHHH
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV----AGIRCLKSNAGLFCWVDMRHLLVS------N--TFEAEKELWK 382 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~~~~~g~f~~~~l~~~~~~------~--~~~~~~~l~~ 382 (464)
+.|+.-+ + +...+..+++.+++.+.|++ +++....-.-|+++.+++...... . +......+..
T Consensus 316 a~L~~i~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (442)
T TIGR00709 316 EALNYWK--D---DNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQG 390 (442)
T ss_pred HHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHH
Confidence 7775311 1 01122333344444444433 332222223467887877432110 0 0111223444
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 383 KIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
.++ ++||++.++.. ..+.+|+..+. +++++++++++++.+++.+
T Consensus 391 ~~~-~~Gvl~~~~~~----~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 391 ACF-ENGLLLETGGR----EGEVFRLLCPITIDQEECEEGISRFKQAVEE 435 (442)
T ss_pred HHH-HCCeEEeecCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 444 67999976432 13579998877 7999999999999999865
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-15 Score=148.60 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=115.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
...|.+.+|++.+ .+..+++++++.|+..++.+++++||.|+++...|.+.... +... |++++.+
T Consensus 71 ~~~Le~~lA~l~g----------~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~-Gi~v~~v 139 (436)
T PRK07812 71 QDVVEQRIAALEG----------GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKL-GIEVSFV 139 (436)
T ss_pred HHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcC-eEEEEEE
Confidence 3577777777764 23467777888899999999999999999999888765432 3334 8888777
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+ +. .|++.+++++++ ++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|++++.... ..
T Consensus 140 d-d~-----~d~e~l~~ai~~------~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~-~~-- 201 (436)
T PRK07812 140 E-DP-----DDLDAWRAAVRP------NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL-IR-- 201 (436)
T ss_pred C-CC-----CCHHHHHHhCCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-CC--
Confidence 5 21 278888887754 7899999999999999975 67788888899999999998863211 11
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEe
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS 287 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~ 287 (464)
. ..+ +..+++.|++|.+|-.|--+|.++.
T Consensus 202 ---p-l~~-------------GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 202 ---P-LEH-------------GADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred ---c-hhc-------------CCCEEEEecccccCCCCCeEEEEEE
Confidence 1 111 4457789999999867766777665
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-14 Score=142.11 Aligned_cols=359 Identities=13% Similarity=0.070 Sum_probs=195.0
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.....+||+..+ ...+ ..|.+.+++.++.+ ....+.......+....+|+.+.+...
T Consensus 35 ~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~-------------~~~~~~~~~~~~~~~~~lae~L~~~~p-- 99 (445)
T PRK08593 35 TLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQAD-------------KFIHYTPAYMYHEPLVRLAKKLCELAP-- 99 (445)
T ss_pred EEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHH-------------hccCccccccCCHHHHHHHHHHHHhCC--
Confidence 4444556678998654 2233 34667777666422 111111111123444555666554321
Q ss_pred CCCC-CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC-------------cEEEEEecCCCCC
Q 037587 105 VKFD-PNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG-------------VEIVPIHCSSSNG 168 (464)
Q Consensus 105 ~~~~-~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g-------------~~~~~v~~~~~~~ 168 (464)
-. .+.|+++++++|++..+++... ....+|+...-+|++....+....+ ..++.+|......
T Consensus 100 --~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~ 177 (445)
T PRK08593 100 --GDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYR 177 (445)
T ss_pred --CCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCcccc
Confidence 11 2589999999999999988632 2235688888888775432211101 0122233211000
Q ss_pred --cc-cCH-------HHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccC
Q 037587 169 --FR-ITI-------SALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFD 237 (464)
Q Consensus 169 --~~-~d~-------~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~ 237 (464)
+. .+. +.+++.+.+. ....++.+|++.......|.. .|.+.++++.++|+++|+++|.||++.++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~Grt 256 (445)
T PRK08593 178 GMYEEPDANFVEEYLAPLKEMFEKY-LPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRT 256 (445)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHhh-cCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC
Confidence 00 111 2233322211 012367666665446667776 68888999999999999999999999864222
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHH
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSR 315 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~ 315 (464)
+. ....... + ..+. +.+|+|.+| .|+++|+++++ +.+.+.+..... .+..++++.+++.+
T Consensus 257 G~----~~a~~~~-g--------v~pD---i~t~gK~l~-~G~p~gav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a 318 (445)
T PRK08593 257 GK----WSSISHF-N--------ITPD---LMSFGKSLA-GGMPMSAIVGR-KEIMESLEAPAHLFTTGANPVSCAAALA 318 (445)
T ss_pred ch----HHHHHhc-C--------CCCC---Eeeeccccc-CCcccEEEEEc-HHHHhhhccCCCCCCCCCCHHHHHHHHH
Confidence 21 1111111 1 1122 348999998 89999999995 455554432111 12356666666666
Q ss_pred HcCCchhhHHHHHHHHHHHHHHHHHHHHHHH----hCCCeeecCCccEEEEEecCccc--ccCChhHHHHHHHHHHHhcC
Q 037587 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGLK----VAGIRCLKSNAGLFCWVDMRHLL--VSNTFEAEKELWKKIIFEVG 389 (464)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~g~~~~~~~~g~f~~~~l~~~~--~~~~~~~~~~l~~~ll~~~g 389 (464)
.++.-+- .+ ..+..++.-+++.+.|+ ++++......-|+++.+++.... ..........++..++ ++|
T Consensus 319 ~l~~l~~-~~----l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~-~~G 392 (445)
T PRK08593 319 TIDMIED-ES----LLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCF-EHG 392 (445)
T ss_pred HHHHHHh-cc----HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHH-HCC
Confidence 5542110 11 12222223333333333 23332222234567667664211 1111122334666665 679
Q ss_pred eEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCcc
Q 037587 390 LNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNPQ 435 (464)
Q Consensus 390 I~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~ 435 (464)
|++.+.. .+.+|++.+. +++++++.+++++.+++++...+
T Consensus 393 v~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~ 433 (445)
T PRK08593 393 VVIIAVA------GNVLRFQPPLVITYEQLDTALNTIEQAFTALEAG 433 (445)
T ss_pred eEEeccC------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence 9997531 3479998877 79999999999999999876543
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.7e-15 Score=144.27 Aligned_cols=276 Identities=20% Similarity=0.240 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcc----cCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLK----WRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~~g~~~~~v~ 162 (464)
..|.++||+..+ .+.+++++++..|+..++.+++++||.|+++...|.+....+. .. |+++..++
T Consensus 58 ~~le~~la~Le~----------g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~-gv~v~~~d 126 (386)
T PF01053_consen 58 RALEQRLAALEG----------GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRF-GVEVTFVD 126 (386)
T ss_dssp HHHHHHHHHHHT-----------SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHT-TSEEEEES
T ss_pred HHHHHHHHHhhc----------ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhccc-CcEEEEeC
Confidence 345555555542 3678999999999999999999999999999999987765543 34 99988876
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC-eEEEEeccccccccCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR-IHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~-~~lI~Deay~~~~~~~~~~ 241 (464)
. -|++++++++++ ++++|++..|.||+..+ .++++|+++|+++| +++|+|..++...+ -
T Consensus 127 ~-------~d~~~l~~~l~~------~t~~v~~EspsNP~l~v---~Dl~~i~~~a~~~g~~~~vVDnT~atp~~-~--- 186 (386)
T PF01053_consen 127 P-------TDLEALEAALRP------NTKLVFLESPSNPTLEV---PDLEAIAKLAKEHGDILVVVDNTFATPYN-Q--- 186 (386)
T ss_dssp T-------TSHHHHHHHHCT------TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTT-C---
T ss_pred c-------hhHHHHHhhccc------cceEEEEEcCCCccccc---ccHHHHHHHHHHhCCceEEeeccccceee-e---
Confidence 4 278999998875 89999999999999887 46888999999998 99999999974311 1
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecC-HHHHHHHHHhc-ccC-CCChHHHHHHHHHc
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNN-ERVVSAATKMS-SFG-LVSSQTQYLLSRML 317 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~-~~~~~~~~~~~-~~~-~~s~~~q~~~~~~l 317 (464)
....+ +..+++.|.+|.++ ....=.|.+++++ +.+...++... ..+ .+++.....+..-+
T Consensus 187 ---~pL~~-------------GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl 250 (386)
T PF01053_consen 187 ---NPLEL-------------GADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGL 250 (386)
T ss_dssp ----GGGG-------------T-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHH
T ss_pred ---ccCcC-------------CceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCC
Confidence 11112 45688999999984 3334478888765 45544443332 222 24555555555544
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eee-c----------------CCccEEEEEecCcccccCChhHHH
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI-RCL-K----------------SNAGLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~-~----------------~~~g~f~~~~l~~~~~~~~~~~~~ 378 (464)
+. +..+.++..++...+.+.|+++ .+ +|. | ..+| .+.+++....
T Consensus 251 ~T-------l~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg-l~sf~l~~~~--------- 313 (386)
T PF01053_consen 251 RT-------LPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGG-LLSFELKGGE--------- 313 (386)
T ss_dssp TT-------HHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTS-EEEEEESSHH---------
T ss_pred Cc-------HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCc-eeEEEeccch---------
Confidence 44 3445556667778889999887 33 233 2 2345 6667776432
Q ss_pred HHHHHHHHhcCeEEeCCCCCCC-------------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 379 ELWKKIIFEVGLNISPGSSCHC-------------------------NEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~~-------------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
+.+..+++.-.+.. .|.++|. -.++.+|||++. |+.+.+++-|+++++
T Consensus 314 ~~~~~f~~~l~l~~-~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 314 EAARRFLDALKLFS-IAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL---EDPDDLIADLEQALE 386 (386)
T ss_dssp HHHHHHHHH-SSSE-ESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHHH
T ss_pred hhhHhHHhhhhhHh-hhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhcC
Confidence 12344444434331 1222221 014689999995 557777777777764
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-15 Score=136.50 Aligned_cols=335 Identities=13% Similarity=0.100 Sum_probs=206.2
Q ss_pred CCceEEeeccccccc---HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc
Q 037587 35 PSGIIQMGLAENQLS---FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~ 111 (464)
..++++|+.| |.+. .|.+.++-.+..+. -..++....-++.|.+. +..|...||++.+ .++
T Consensus 66 ~k~ilnFcaN-nYLGLsshPeii~a~~~alee---yGaGlssvrfIcGtq~i--Hk~LE~kiAqfh~----------rED 129 (417)
T KOG1359|consen 66 DKKILNFCAN-NYLGLSSHPEIINAGQKALEE---YGAGLSSVRFICGTQDI--HKLLESKIAQFHG----------RED 129 (417)
T ss_pred ccceeeeccc-ccccccCChHHHHHHHHHHHH---hCCCccceeEEecchHH--HHHHHHHHHHHhC----------CCc
Confidence 4567788765 3332 34444433332211 11233334455666654 4788888888875 344
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
.++.+..-.++..++.+++.|.|.|+..+..+......++.. . + .-.+|+-.++..+.++.+ .+.+
T Consensus 130 ~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLc-k-r----------y~h~dv~~l~~~l~~a~k--~r~k 195 (417)
T KOG1359|consen 130 TILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLC-K-R----------YRHVDVFDLEHCLISACK--MRLK 195 (417)
T ss_pred eEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHH-h-h----------hccchhHHHHHHHHHhhh--heEE
Confidence 556677777888888899999999999988887776665543 2 1 113566667766654321 2666
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+|+....=...|.+.| +++|.++++++|.++++||+++-..|+..+ ....++.. ...+..++.+++
T Consensus 196 lv~TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tG---rGt~E~~~--------vm~~vdiinsTL 261 (417)
T KOG1359|consen 196 LVVTDGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFFGETG---RGTAEEFG--------VMGDVDIINSTL 261 (417)
T ss_pred EEEecceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceeecCCC---CChHHHhC--------CCCcceehhhhh
Confidence 5555555678888876 566778888999999999999977665442 22223322 134677888999
Q ss_pred CcCCC-CCccEEEEEEecCHHHHHHHHHh-cccCC---CCh----HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Q 037587 272 SKDFS-MPGFRVGMIYSNNERVVSAATKM-SSFGL---VSS----QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLV 342 (464)
Q Consensus 272 SK~~g-~~GlRiG~l~~~~~~~~~~~~~~-~~~~~---~s~----~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (464)
+|++| ..| ||..+|.+ +...++.. ++|.. .++ .+..+...++.+.. .....+.+..++.
T Consensus 262 gKAlGga~G---Gyttgp~~-li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~--------~i~~~~a~~qrfr 329 (417)
T KOG1359|consen 262 GKALGGASG---GYTTGPKP-LISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSK--------EIQSRQANTQRFR 329 (417)
T ss_pred hhhhcCCCC---CCccCChh-HHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHH--------HHHHHHHHHHHHH
Confidence 99996 555 99999655 55555544 34421 121 12222222222221 2233445556677
Q ss_pred HHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHH
Q 037587 343 SGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-CNEPGWFRICFAN-ITEETLQV 420 (464)
Q Consensus 343 ~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~ 420 (464)
+.++..|+++..... ..+.+-+... ..+.....+||+ .||+|.--+... +.+...+|+.++. .++|++++
T Consensus 330 ~~me~aGftIsg~~h-PI~pv~lGda------~lA~~~ad~lLk-~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~ 401 (417)
T KOG1359|consen 330 EFMEAAGFTISGASH-PICPVMLGDA------RLASKMADELLK-RGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDR 401 (417)
T ss_pred HHHHhcCceecCCCC-CccceecccH------HHHHHHHHHHHh-cCceEEeecCCcCCCCceEEEEEEehhcCHHHHHH
Confidence 877777998875433 2443434321 223456778884 699997333222 2234568888877 79999999
Q ss_pred HHHHHHHHHHhhC
Q 037587 421 ALQRIKVFAQSCN 433 (464)
Q Consensus 421 ~l~~l~~~l~~~~ 433 (464)
+++++.++.+.++
T Consensus 402 ~i~Af~~vgr~~~ 414 (417)
T KOG1359|consen 402 LIEAFSEVGRFLN 414 (417)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887665
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-15 Score=149.06 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=121.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~v 161 (464)
..+|++.+|++.+ . +..++++++++|+.+++.+++++||.|+++...|......+ ... |++++.+
T Consensus 66 ~~~le~~lA~l~g--------~--~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~-Gi~v~~v 134 (433)
T PRK08134 66 VAVLEERVAALEG--------G--VGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRF-GIETTFV 134 (433)
T ss_pred HHHHHHHHHHHhC--------C--CcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhC-CeEEEEE
Confidence 4678888888875 2 23688999999999999999999999999999997654433 335 9999888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++++++.+++ ++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|.+++...+ ..
T Consensus 135 d~~-------d~~~l~~~i~~------~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~-~~-- 195 (433)
T PRK08134 135 KPG-------DIDGWRAAIRP------NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL-LR-- 195 (433)
T ss_pred CCC-------CHHHHHHhcCC------CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc-CC--
Confidence 753 68899988865 8899999999999999975 77788889999999999999863211 11
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEe
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS 287 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~ 287 (464)
++ .+ +..+++.|.+|.+|-+|-.+|.++.
T Consensus 196 ---pl-~~-------------GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 196 ---PF-EH-------------GADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred ---ch-hc-------------CCCEEEeccccccCCCCCceEEEEE
Confidence 11 12 4568899999999867766776654
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-15 Score=144.51 Aligned_cols=294 Identities=11% Similarity=0.079 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcE--EEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKL--VLTAGSTAANETLMFCL--ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i--~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~ 162 (464)
.++.+.+.+++.+.++ ++++++ ++|+|+||++..++.+. ..+++.|++++-.|......++.+ |.+...++
T Consensus 64 ~~~e~~~~~~~a~l~g----~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~l-g~~~~~V~ 138 (380)
T PRK02769 64 FDFERDVMNFFAELFK----IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLL-RIKSRVIT 138 (380)
T ss_pred HHHHHHHHHHHHHHhC----CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHc-CCCCceec
Confidence 4555555555555544 455554 88999999987776543 246889999999998888888776 88888888
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC---eEEEEeccccccccCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR---IHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~---~~lI~Deay~~~~~~~~ 239 (464)
.++ ++.+|+++|++.+++. +.++.+|+++.++|+||.+-| +++|.++|+++| +++.+|.+|+.+...-.
T Consensus 139 ~~~--~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~ 210 (380)
T PRK02769 139 SLP--NGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFV 210 (380)
T ss_pred cCC--CCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeeccc
Confidence 764 5579999999999762 345888999999999999955 667788888987 79999999986432111
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc---------CCCChHHH
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF---------GLVSSQTQ 310 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~---------~~~s~~~q 310 (464)
. . ...... ..+...+..|.+|.++ ....+|.++.+++.+.. +.....+ ++-+....
T Consensus 211 ~-~-~~~~d~-----------~~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~-~~~~~~yl~~~d~t~~GSR~g~~~ 275 (380)
T PRK02769 211 N-N-PPPFSF-----------ADGIDSIAISGHKFIG-SPMPCGIVLAKKKYVER-ISVDVDYIGSRDQTISGSRNGHTA 275 (380)
T ss_pred C-c-cccCCc-----------cCCCCEEEECCcccCC-CCCCcEEEEEehhhhhh-cccCccccCCCCCCccCCCCcHHH
Confidence 0 0 000011 1134456789999887 44568999886554332 2111111 11222222
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCe
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGL 390 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI 390 (464)
.++-..++.-. ..-+++..+...+..+++.+.|++.|+++........+.++.+. ..+. .|.
T Consensus 276 l~lw~aL~~lg--~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~--------------~~~~--~~w 337 (380)
T PRK02769 276 LLLWAAIRSLG--SKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS--------------ERIW--KKW 337 (380)
T ss_pred HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC--------------HHHH--hCe
Confidence 22222332211 23355666667777788999998888876653333455555442 0111 355
Q ss_pred EEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 391 NISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 391 ~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+.+. .+++||++.. ++++.++.+++.|...+....
T Consensus 338 ~l~~~-------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~~~ 374 (380)
T PRK02769 338 HLATS-------GNQAHIITMPHHNKQQIDSLIDELIFDLKNPN 374 (380)
T ss_pred eEccc-------CCEEEEEECCCCCHHHHHHHHHHHHHHHhccc
Confidence 55432 2479999976 688899999999988777544
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-14 Score=142.82 Aligned_cols=355 Identities=14% Similarity=0.105 Sum_probs=197.1
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.. ....+.......+.+..+|+.+.+...
T Consensus 45 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~-------------~~~~~~~~~~~~~~~~~la~~l~~~~p-- 109 (460)
T PRK06541 45 YIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAG-------------TLAFFPLWSYAHPPAIELAERLAALAP-- 109 (460)
T ss_pred EEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHh-------------hCcCccccccCCHHHHHHHHHHHHhCC--
Confidence 4445556778998765 2334 34667776666422 111111111123445556666654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCCCChhhhcccCCCc------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD--------PGDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~ 164 (464)
...+.++++++++|++..+++.... ...+|+...-+|++....+....|. .+..+|..
T Consensus 110 --~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~ 187 (460)
T PRK06541 110 --GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNT 187 (460)
T ss_pred --CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCC
Confidence 1236899999999999998886421 1367888888887764332211111 11222211
Q ss_pred CCC---CcccC--------HHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCC-HHHHHHHHHHHhhCCeEEEEeccc
Q 037587 165 SSN---GFRIT--------ISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMT-HQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 165 ~~~---~~~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s-~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
..- .|.-+ ++.+++.+.. .+++..+.++..| .++.|.+.+ .+.++++.++|+++|+++|.||++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~ 264 (460)
T PRK06541 188 NFYRAPELGDDPEAFGRWAADRIEEAIEF---EGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVI 264 (460)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHh---cCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 000 01112 2455555542 1223345566667 889998765 788999999999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc-EEEEEEecCHHHHHHHHHh-cc-----cCC
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF-RVGMIYSNNERVVSAATKM-SS-----FGL 304 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl-RiG~l~~~~~~~~~~~~~~-~~-----~~~ 304 (464)
.+ |+..+..+ .. ... + ..+.+ -+|||.+| .|+ ++|+++++++ +.+.+... .. .+.
T Consensus 265 tG--fGR~G~~~-a~-~~~-g--------v~PDi---vt~gK~l~-~G~~pigav~~~~~-i~~~~~~~~~~~~~~~T~~ 326 (460)
T PRK06541 265 CA--FGRLGEMF-GC-ERF-G--------YVPDI---ITCAKGIT-SGYSPLGAMIASDR-LFEPFLDGPTMFLHGYTFG 326 (460)
T ss_pred hC--CCcCchhh-hh-hhc-C--------CCCCE---EEeccccc-CCccceeEEEEcHH-HHHHhhcCCCccccCCCCC
Confidence 76 43221011 11 110 0 11222 26999998 897 9999999554 44433221 11 112
Q ss_pred CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCee---ecCCccEEEEEecCcccccC-Ch-----
Q 037587 305 VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRC---LKSNAGLFCWVDMRHLLVSN-TF----- 374 (464)
Q Consensus 305 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~---~~~~~g~f~~~~l~~~~~~~-~~----- 374 (464)
.++++.+++.+.++--. -+...+.++++.++|.+.|+++ ...+ .... |.++-+++....... ..
T Consensus 327 gnp~~~aaala~l~~l~-----~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~-Gl~~~ie~~~~~~~~~~~~~~~~ 400 (460)
T PRK06541 327 GHPVSAAVALANLDIFE-----REGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGD-GYFYGIELVKDKATKETFTDDES 400 (460)
T ss_pred CCHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec-ceEEEEEEecCcccccCCcchhh
Confidence 34555555555443211 1123344555556666666554 2221 3334 457777764211100 00
Q ss_pred h--HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 375 E--AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 375 ~--~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
. ....+...++ ++||++.+.. .+...+||+... ++++++++++++|.+++++.
T Consensus 401 ~~~~~~~~~~~l~-~~Gi~~~~~~----~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 401 ERLLRGFLSPALF-EAGLYCRADD----RGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred hhhHHHHHHHHHH-hCCeEEEecC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 0113445554 6799998631 124579999986 79999999999999998754
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.9e-14 Score=141.52 Aligned_cols=356 Identities=12% Similarity=0.076 Sum_probs=193.6
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.+..+. ...+....-..+....+|+.+.+....
T Consensus 47 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~-------------~~~~~~~~~~~~~~~~lAe~L~~~~p~- 112 (441)
T PRK05769 47 WVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEK-------------FLHYSLTDFYYEPAVELAERLVEIAPG- 112 (441)
T ss_pred EEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHh-------------ccCccCcccCCHHHHHHHHHHHHhCCC-
Confidence 4444556778898765 3333 346666666664221 111111111134556677776543210
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc-------------EEEEEecCCC--C
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV-------------EIVPIHCSSS--N 167 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~-------------~~~~v~~~~~--~ 167 (464)
-..+.++++++++|++..+++... ....+|+...-+|++....+....+. .+..++.... .
T Consensus 113 --~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (441)
T PRK05769 113 --GFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRN 190 (441)
T ss_pred --CCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccc
Confidence 013689999999999999987632 23467888888887765322111010 1222322110 0
Q ss_pred Ccc-cC--------HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccC
Q 037587 168 GFR-IT--------ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFD 237 (464)
Q Consensus 168 ~~~-~d--------~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~ 237 (464)
.|. -+ ++.+++.+.+......++.+|++.-...-.|... +.+.++++.++|+++|+++|.||++.++...
T Consensus 191 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~ 270 (441)
T PRK05769 191 PWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRT 270 (441)
T ss_pred cccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence 011 01 2223332211000123566555543345567644 5778999999999999999999999874222
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-hcccCCCChHHHHHHHHH
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-MSSFGLVSSQTQYLLSRM 316 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-~~~~~~~s~~~q~~~~~~ 316 (464)
+. . .....+ . ..+.++ +|||.+| .|+++|+++++++ +...... ....+..++++++++.+.
T Consensus 271 G~--~-~a~~~~--g--------v~pDiv---t~~K~l~-~G~p~gav~~~~~-i~~~~~~~~~~T~~g~p~~~aaa~a~ 332 (441)
T PRK05769 271 GK--M-FAIEHF--G--------VEPDII---TLAKAIA-GGLPLGAVIGRAE-LMFLPPGSHANTFGGNPVAAAAALAT 332 (441)
T ss_pred cc--e-ehhhcc--C--------CCCCEE---EEccccc-CCcccEEEEEehh-hhhcCCCCCCCCCCcCHHHHHHHHHH
Confidence 22 1 111111 1 112233 6899998 8999999998544 4332221 111223467777777666
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEE
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v 392 (464)
|+-- ++ ...+.+++.-++|.+.|+++ ++......-|+++-+.+..............+...++ ++||++
T Consensus 333 L~~l---~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~Gil~ 405 (441)
T PRK05769 333 LEEL---EE---GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAF-KRGLLL 405 (441)
T ss_pred HHHH---HH---HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHH-hCCcEE
Confidence 6432 11 23334444445555555443 3222222335677777743211111112234555554 679999
Q ss_pred eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 393 SPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 393 ~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
.+. +...+|++... ++++++++++++|.+++.+
T Consensus 406 ~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 406 LGA------GKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred ecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 753 23569999876 7999999999999999865
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.9e-15 Score=158.73 Aligned_cols=309 Identities=13% Similarity=0.078 Sum_probs=190.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCC--cEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhh---cccCCCcEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPN--KLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRD---LKWRPGVEIV 159 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~---~~~~~g~~~~ 159 (464)
..+.|+.||++++ ++++ .|++|+|+|+++++++..+ .++||.|++..-.|+..... ++.. |+++.
T Consensus 80 ~e~aR~~ia~~lg--------a~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~-G~~v~ 150 (805)
T PLN02724 80 IESARQQVLEYFN--------APPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEK-GAAAI 150 (805)
T ss_pred HHHHHHHHHHHhC--------CCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHc-CCeEE
Confidence 4678888888876 5554 5899999999999999887 67899999987777654433 2334 88998
Q ss_pred EEecCCCC------CcccCH--HHHHHHHHH----HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC-----C
Q 037587 160 PIHCSSSN------GFRITI--SALENAYQQ----AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK-----R 222 (464)
Q Consensus 160 ~v~~~~~~------~~~~d~--~~l~~~i~~----~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~-----~ 222 (464)
.++++... ...+++ +.+++.++. ....++++++|.++.-+|-||..+|.+.++.+.+.+..+ +
T Consensus 151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~ 230 (805)
T PLN02724 151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR 230 (805)
T ss_pred eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence 88875211 112222 455554321 011124668999999999999999987655544443222 3
Q ss_pred eEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHh-c
Q 037587 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKM-S 300 (464)
Q Consensus 223 ~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~-~ 300 (464)
+++++|.+.+- +.. ..++..+ +..+++.|++|.+| ..| +|+++.+++.+. .+... .
T Consensus 231 ~~v~vDaaQ~~---g~~---piDv~~~-------------~~Dfl~~S~HK~~GgP~G--~G~L~vr~~~~~-~l~p~~~ 288 (805)
T PLN02724 231 WMVLLDAAKGC---GTS---PPDLSRY-------------PADFVVVSFYKIFGYPTG--LGALLVRRDAAK-LLKKKYF 288 (805)
T ss_pred eEEEeehhhhc---CCC---CCChhhc-------------CCCEEEEecceeccCCCC--ceEEEEehhhhh-hhcCCcc
Confidence 67999998873 221 1233222 45678899999997 345 799988654332 22211 0
Q ss_pred -------------------------ccCCCChHHHHHHHHHcCCchhhHH-HHHHHHHHHHHHHHHHHHHHHhC------
Q 037587 301 -------------------------SFGLVSSQTQYLLSRMLSDKKFTCN-YMKENRKRLRKRKEMLVSGLKVA------ 348 (464)
Q Consensus 301 -------------------------~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~------ 348 (464)
-.++.+.....++.++++- +.+ .++...++..+..+++.+.|.++
T Consensus 289 GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~---l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~ 365 (805)
T PLN02724 289 GGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKL---LNRLTISAIAMHTWALTHYVANSLRNLKHGNGA 365 (805)
T ss_pred CCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHH---HHHhChHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 0012333333333333321 111 23445566667777788888765
Q ss_pred -CCeeecCC---------ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-----------------
Q 037587 349 -GIRCLKSN---------AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN----------------- 401 (464)
Q Consensus 349 -g~~~~~~~---------~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~----------------- 401 (464)
++.++.+. ++ .+.+.+... ....+. . ..+..++.++||.++.|..|.+.
T Consensus 366 ~~v~iyg~~~~~~~~~~r~~-ivsFnv~~~-~~~~v~-~-~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~ 441 (805)
T PLN02724 366 PVCVLYGNHTFKLEFHIQGP-IVTFNLKRA-DGSWVG-H-REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANF 441 (805)
T ss_pred eEEEEcCCCCCCCCcccccC-EEEEEEEcC-CCCEeC-H-HHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHh
Confidence 35666432 23 343444321 111111 1 12456677889999998876531
Q ss_pred ----------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 402 ----------------EPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 402 ----------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
..|.+|+|++. .+.++++.+++.|++.....
T Consensus 442 ~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~~ 489 (805)
T PLN02724 442 EAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVST 489 (805)
T ss_pred hcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhcC
Confidence 12789999998 78999999999999976544
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-15 Score=138.57 Aligned_cols=299 Identities=15% Similarity=0.123 Sum_probs=198.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcEEEEEec
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
.-+|...+|++.++ +..+ +.++---+.+..+..|. -||=.|+...-.+..+...++.. +++-..+.-
T Consensus 218 hv~LE~eLA~LHqK---------~aAL-lFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns-~v~K~IFrH 286 (570)
T KOG1360|consen 218 HVRLEAELADLHQK---------EAAL-LFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNS-RVPKHIFRH 286 (570)
T ss_pred hhhHHHHHHHHhcC---------ccee-eeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhc-CCcceeecc
Confidence 46888888888863 2222 22222223333333332 27777777777777776666655 554433331
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
-|++.|++.+.+... ..+|+|-+...+..+|.+-| +++|++++.++|.+.++||+++-..|+..+.
T Consensus 287 -------ND~~hL~~lL~~~~~--svPKivAFEtVhSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~rGa-- 352 (570)
T KOG1360|consen 287 -------NDLDHLEQLLQSSPK--SVPKIVAFETVHSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRGA-- 352 (570)
T ss_pred -------CCHHHHHHHHHhCCC--CCCceEEEeeeeccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCCCC--
Confidence 278999999876422 35788888889999999976 6678999999999999999998776765421
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-cC-C--CChHHHHHHHH---H
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-FG-L--VSSQTQYLLSR---M 316 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-~~-~--~s~~~q~~~~~---~ 316 (464)
.+.+- + +-.....|+-+++.|+||+-| |||.+ ...+.+.++.+.. |. + .++.....+.. .
T Consensus 353 -Gvger-d-------Gvm~kvDiIsGTLgKafGcVG---GYIAa-t~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~ 419 (570)
T KOG1360|consen 353 -GVGER-D-------GVMHKVDIISGTLGKAFGCVG---GYIAA-TRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRI 419 (570)
T ss_pred -Ccccc-C-------Ccchhhhhcccchhhhccccc---ceehh-hhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHH
Confidence 11111 0 112345577899999999988 99988 4556777776643 22 1 22222222222 2
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
|...+ -+..|...++...++.+.|.+.|++|.+.... .+-+.+..... ..+.+..|+.++||+|..-.
T Consensus 420 lk~~e-----g~~lR~~hqrnv~~~kq~l~~~GiPVi~~pSH-IiPv~vgda~l------~~~~sd~Li~~h~iYvQaIN 487 (570)
T KOG1360|consen 420 LKSEE-----GRVLRRQHQRNVKYVKQLLMELGIPVIPNPSH-IIPVRVGDAAL------AKQASDILISKHNIYVQAIN 487 (570)
T ss_pred Hhhhh-----hHHHHHHHHHHHHHHHHHHHHcCCcccCCCcc-eeeeeccCHHH------HHHHHHHHHHhcCeEEEecc
Confidence 22221 24456677788899999999999999987764 67677654321 23577888999999997554
Q ss_pred CCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 397 SCH-CNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 397 ~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
... +.+...+||+.+. .+++.++.+++.|..++++.+-
T Consensus 488 yPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~l 527 (570)
T KOG1360|consen 488 YPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVGL 527 (570)
T ss_pred CCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 333 2345579998865 5889999999999999988874
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=131.45 Aligned_cols=334 Identities=15% Similarity=0.184 Sum_probs=208.0
Q ss_pred eEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCC
Q 037587 38 IIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAG 117 (464)
Q Consensus 38 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G 117 (464)
.+||-++.-..|.+..++++..+. -.-.-|+......+|.+.+|+.+++ ..-+++++|
T Consensus 23 ~vDLRSDTvT~PTdeMr~am~eA~-------------vgDdVyGeD~tt~rLE~~vA~l~GK---------EAgLFv~SG 80 (384)
T KOG1368|consen 23 SVDLRSDTVTVPTDEMRRAMAEAS-------------VGDDVYGEDPTTNRLEQRVAELFGK---------EAGLFVPSG 80 (384)
T ss_pred ccccccccccCChHHHHHHHhhcc-------------cCcccccCCccHHHHHHHHHHHhCc---------cceeeeccc
Confidence 367777766667777777665531 1223455444568999999999874 334677777
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh--cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh--hcCCceEEE
Q 037587 118 STAANETLMFCLADPGDAFLLPTPYYPGFDRD--LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ--TLNLKVKGV 193 (464)
Q Consensus 118 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~~~v 193 (464)
+...+-.++..+-++|..|++.+-++--..+. +....|+.+.++... ++..+++++++++++.-. -..+.+++|
T Consensus 81 TmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e--~dgtm~ledIe~~ir~~~GD~H~p~T~LI 158 (384)
T KOG1368|consen 81 TMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNE--NDGTMDLEDIEAAIRVPKGDCHMPPTKLI 158 (384)
T ss_pred ccccHHHHHHHhcCCCceEEeccchheeehhccChhhhccceeEeeeeC--CCCeeeHHHHHHhhcCCCCCccCCCceEE
Confidence 66666555555666999999998876422222 223347777777643 455689999999997321 123578999
Q ss_pred EEeCCCCCCC-CCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 194 LITNPSNPLG-TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 194 il~~P~NPtG-~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
++.|-+|-+| .++|.+++.++.++|++||+.+..|.+-. |+..-..-.++..+.... +.|- -.||
T Consensus 159 clENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi---~NAavasgV~vk~i~~~f---------DSVs--iCLS 224 (384)
T KOG1368|consen 159 CLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI---FNAAVASGVPVKKICSAF---------DSVS--ICLS 224 (384)
T ss_pred EeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh---hhHHHHcCCCHHHHHHhh---------hhhh--hhhh
Confidence 9999987777 99999999999999999999999999875 542200113444444322 2222 2789
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHh-cccC---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKM-SSFG---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~-~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
|.+|.| +|.++..++..+...+.. ...+ --+.+..+++..+|++. ....+. -.++...+.+.+...
T Consensus 225 KglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~------~~~L~~-dHk~A~~lAe~~~~~ 294 (384)
T KOG1368|consen 225 KGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDEN------VPLLRA-DHKRAKELAEYINTP 294 (384)
T ss_pred ccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcc------hHHHHH-HHHHHHHHHHHhccc
Confidence 998744 677654444443333222 2221 12223333333333321 122222 223445667777666
Q ss_pred C-Ceeec--CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHH
Q 037587 349 G-IRCLK--SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQR 424 (464)
Q Consensus 349 g-~~~~~--~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 424 (464)
+ +++.. .+.+ ++.+.+.+.- ....+++..+ +++||.+.+|..+ .+||.+.. +++++++.++..
T Consensus 295 ~~i~v~v~a~etN-iv~~~l~q~~-----~~~~~l~~~~-~k~gi~lm~~~s~------r~Rivlh~Qvt~~~ve~~~~~ 361 (384)
T KOG1368|consen 295 EEIRVEVPAVETN-IVNMVLCQAR-----LTAEELCKFL-EKNGILLMGGASR------RIRIVLHHQVTDEDVEYVKSV 361 (384)
T ss_pred cceeeecchhhcc-eeeeeccccc-----CCHHHHHHHH-HHCCeEEeecccc------ceEEEEEEecCHHHHHHHHHH
Confidence 4 66543 3565 6766664321 1123566665 6889999987643 48999988 899999999999
Q ss_pred H-HHHHHhh
Q 037587 425 I-KVFAQSC 432 (464)
Q Consensus 425 l-~~~l~~~ 432 (464)
+ +.++...
T Consensus 362 ~~k~~~~q~ 370 (384)
T KOG1368|consen 362 LSKKFLKQL 370 (384)
T ss_pred HHHHHHhhc
Confidence 9 4444443
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-14 Score=140.84 Aligned_cols=342 Identities=11% Similarity=0.026 Sum_probs=194.5
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.....+||+..+ .+.+ ..|.+.+++.++.+. ......|- ..+.+..+|+.+.+...
T Consensus 68 ~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~----------l~~~~~~~----~~~~~~~lAe~L~~~~p-- 131 (442)
T TIGR03372 68 TLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAK----------QPLHSQEL----LDPLRALLAKTLAALTP-- 131 (442)
T ss_pred EEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHh----------CCCccccc----CCHHHHHHHHHHHHhCC--
Confidence 4444556778998766 4444 346677776664321 11112221 14445556666654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC-----CCCeEEEcCCCCCChhhhcccCCCcE------------EEEEecCCCC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD-----PGDAFLLPTPYYPGFDRDLKWRPGVE------------IVPIHCSSSN 167 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~-----~gd~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v~~~~~~ 167 (464)
-..+.++++++++|+++.+++.... ...+|+....+|++....+....+-. +..+|.
T Consensus 132 --~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~---- 205 (442)
T TIGR03372 132 --GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF---- 205 (442)
T ss_pred --CCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC----
Confidence 1235799999999999999886421 23578988988887653322221211 111221
Q ss_pred CcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccch
Q 037587 168 GFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISI 246 (464)
Q Consensus 168 ~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~ 246 (464)
.|.+.+++.++.....+.++.+|++..-..-.|... |.+.++++.++|+++|+++|.||++.+ |+..+ .+...
T Consensus 206 ---~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG--~GRtG-~~~a~ 279 (442)
T TIGR03372 206 ---GDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTG--MGRTG-KMFAC 279 (442)
T ss_pred ---CCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccC--CCccc-cchhh
Confidence 256777777754332334666666543355567655 677799999999999999999999976 44331 11111
Q ss_pred hhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh----cccCCCChHHHHHHHHHcC---
Q 037587 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM----SSFGLVSSQTQYLLSRMLS--- 318 (464)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~----~~~~~~s~~~q~~~~~~l~--- 318 (464)
+.. + ..+. +-+|+|.+| .| +.+|.++++ +.+.+.+... ...+..++++.+++.+.|+
T Consensus 280 -e~~-g--------v~PD---ivt~gK~lg-~G~~Pigavv~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~ 344 (442)
T TIGR03372 280 -EHE-G--------VQPD---ILCLAKALG-GGVMPIGATIAT-EAVFSVLFDNPFLHTTTFGGNPLACAAALATINELL 344 (442)
T ss_pred -hhc-C--------CCCC---eeeehhhhc-CCcccceEEEec-HHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHH
Confidence 110 0 1122 236999998 88 699999985 4455544211 1112245666666665554
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-C-eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-I-RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~-~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
+.++ .++.+++-+.+++. |.+...++. . .-.. .-|+++.+.+... .....++..++ ++||++.+..
T Consensus 345 ~~~l-~~~~~~~G~~l~~~---L~~l~~~~~~~i~~vR-G~Gl~~giel~~~------~~~~~i~~~l~-~~Gvl~~~~~ 412 (442)
T TIGR03372 345 EKNL-PAQAAIKGDFLLDG---FQQLAAEYPDLIIEAR-GKGLLMAIEFRDN------EIGYAFAKELF-QQNILVAGTL 412 (442)
T ss_pred hccH-HHHHHHHHHHHHHH---HHHHHHhCCCceEEEe-cceEEEEEEeCCh------HHHHHHHHHHH-HCCcEEeecC
Confidence 2222 22222222222222 222222222 1 1122 3467888888642 11234666665 6799997532
Q ss_pred CCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 397 SCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 397 ~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
. ..+.+||.... ++++++++++++|.+++
T Consensus 413 ~----~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 413 N----NAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred C----CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 1 13579999876 79999999999998763
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-14 Score=135.84 Aligned_cols=345 Identities=14% Similarity=0.116 Sum_probs=207.4
Q ss_pred CCCCCCCCceEEeecccccc----cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAENQL----SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+-.....||+..+--++ .+|.+.+++++.. ..-..|..+ .++.-.+|+.+.+...
T Consensus 46 ~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l-------------~~G~~fg~P---te~Ei~~Aell~~~~p-- 107 (432)
T COG0001 46 YLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQL-------------ERGLSFGAP---TELEVELAELLIERVP-- 107 (432)
T ss_pred eEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHH-------------HhcCCCCCC---CHHHHHHHHHHHHhcC--
Confidence 44444556788888764443 3467888877753 333556643 4555566666655422
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChhhhcccCCC-------------c------EEEEEec
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCL--ADPGDAFLLPTPYYPGFDRDLKWRPG-------------V------EIVPIHC 163 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~~g-------------~------~~~~v~~ 163 (464)
.-+.|-++|++|||...+++.. ...-|+|+..+-||++....+....| + .++.+|.
T Consensus 108 ---~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y 184 (432)
T COG0001 108 ---SIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY 184 (432)
T ss_pred ---cccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC
Confidence 3488999999999999988864 22348999999999877655332112 1 1222332
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC--CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNP--SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P--~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+ |++.+++++++. +.++.+|++ -| .| .|.+. .++.+++|.++|+++|+++|.||+..++...-.
T Consensus 185 N-------D~~al~~~~~~~---g~~IAaVIv-EPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~g- 251 (432)
T COG0001 185 N-------DLEALEEAFEEY---GDDIAAVIV-EPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALG- 251 (432)
T ss_pred C-------CHHHHHHHHHHc---CCcEEEEEe-ccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCc-
Confidence 2 789999998763 346665555 45 45 45544 455699999999999999999999987544322
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-c----CCCChHHHHHHHH
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-F----GLVSSQTQYLLSR 315 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-~----~~~s~~~q~~~~~ 315 (464)
.......+.+ -+.+|.|+.| .|+.+|.+.++ +++.+.+..... + .+-++++..|..+
T Consensus 252 -Gaq~~~gi~P---------------DlttlGKiIG-GGlP~ga~gGr-~eiM~~~~p~g~vyqaGT~sgnplamaAG~a 313 (432)
T COG0001 252 -GAQGYYGVEP---------------DLTTLGKIIG-GGLPIGAFGGR-AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLA 313 (432)
T ss_pred -ccccccCcCc---------------chhhhhhhhc-CCcceeeeccH-HHHHhhhCCCCCccccCCCCCcHHHHHHHHH
Confidence 2233333322 3669999999 99999998884 445443332221 1 2345666666665
Q ss_pred HcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CccEEEEEecCccc------ccCChhHHHHHHHHHHHhc
Q 037587 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS-NAGLFCWVDMRHLL------VSNTFEAEKELWKKIIFEV 388 (464)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~f~~~~l~~~~------~~~~~~~~~~l~~~ll~~~ 388 (464)
.+..-.--....+++.+.-.+.++-+.+.+.++|+++... .+++|-..-.+... ...+.+.-..+...|| ++
T Consensus 314 tl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l-~~ 392 (432)
T COG0001 314 TLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLL-NR 392 (432)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHH-hC
Confidence 5542110000122222222333344555555667766543 34444333222111 0011122345666666 56
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 389 GLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 389 gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
||++.|+.. ...=+|.. .++++++..++++.+++++..
T Consensus 393 GV~l~ps~~------ea~flS~a-hte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 393 GVYLAPSQF------EAGFLSTA-HTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred CcccCCccc------cceeeecc-cCHHHHHHHHHHHHHHHHHhh
Confidence 999987641 12346666 489999999999998887653
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-14 Score=132.44 Aligned_cols=313 Identities=14% Similarity=0.156 Sum_probs=202.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhccc--CCC--
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKW--RPG-- 155 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~--~~g-- 155 (464)
|+-..-.+++.....++.++.+| ++..||-..+|++ |+..++.+|++|||+|+-.+-.++++...... ..|
T Consensus 64 YgGce~VD~vE~laierak~LFg----a~~anVQPhSGs~-AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~ 138 (413)
T COG0112 64 YGGCEYVDEVEELAIERAKKLFG----AEYANVQPHSGSQ-ANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKL 138 (413)
T ss_pred cCCCeeHHHHHHHHHHHHHHHhC----CCccccCCCCchH-HHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCcccee
Confidence 33333345555555566666666 6777888877765 56667789999999999999888877544311 113
Q ss_pred cEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 156 VEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 156 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
.+++.++++++ ...+|.|++++...+. +||+|+.-...-| ..+ +++++.++|.+-|.++++|-++....
T Consensus 139 ~~~v~Y~vd~e-t~~IDyD~~~k~a~e~-----kPK~ii~G~SaY~--r~i---d~~~~reIad~VGA~L~~DmAHiaGL 207 (413)
T COG0112 139 FNVVSYGVDPE-TGLIDYDEVEKLAKEV-----KPKLIIAGGSAYS--RPI---DFKRFREIADEVGAYLMVDMAHVAGL 207 (413)
T ss_pred EEeEecccccc-cCccCHHHHHHHHHHh-----CCCEEEECccccc--ccc---CHHHHHHHHHHhCceEEehHHHHHHH
Confidence 35667777754 4579999999998875 8997766422222 223 46666777778899999999996443
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCC-ChHHHHHHH
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLV-SSQTQYLLS 314 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~-s~~~q~~~~ 314 (464)
..+. .+++... ...++..|.+|+| .|-|-|.|++.++++.+.+++.--++.. ++..-.+++
T Consensus 208 VA~G--~~p~P~~--------------~AdvVTtTTHKTl--rGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAa 269 (413)
T COG0112 208 IAGG--VHPNPLP--------------HADVVTTTTHKTL--RGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAA 269 (413)
T ss_pred Hhcc--cCCCCCC--------------ccceEeCCcccCC--CCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHH
Confidence 3333 2233221 2457789999998 7889999999776777777664434333 332222222
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc-cEEEEEecCcc-cccCChhHHHHHHHHHHHhcCeEE
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNA-GLFCWVDMRHL-LVSNTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-g~f~~~~l~~~-~~~~~~~~~~~l~~~ll~~~gI~v 392 (464)
.+..-.+.++..+++..+++.++.+.|.+.|.+.|+++....+ +..+.+++... ... +.+..+|.+.||.+
T Consensus 270 kaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~G-------k~ae~~L~~~~It~ 342 (413)
T COG0112 270 KAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTG-------KKAEAALERAGITV 342 (413)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCH-------HHHHHHHHHcCEee
Confidence 2222111111223444556667888899999999999876433 45667888732 122 24567788889998
Q ss_pred e----CCCCCCCCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHHhhC
Q 037587 393 S----PGSSCHCNEPGWFRICFAN-----ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 393 ~----pg~~f~~~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~~ 433 (464)
. |...-.+..+..+||.... ..++++++..+.|.+++...+
T Consensus 343 NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~~ 392 (413)
T COG0112 343 NKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGLK 392 (413)
T ss_pred ccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhccc
Confidence 5 3332222235569998744 357899999999999998766
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-14 Score=141.19 Aligned_cols=351 Identities=11% Similarity=0.066 Sum_probs=197.9
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ...+... ...+.+..+|+.+.+...
T Consensus 75 ~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~-------------l~~~~~~-~~~~~~~~lae~L~~~~p-- 138 (459)
T PRK11522 75 TLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAK-------------QPLHSQE-LLDPLRAMLAKTLAALTP-- 138 (459)
T ss_pred EEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhh-------------Ccccccc-cCCHHHHHHHHHHHHhCC--
Confidence 4444456678888766 4444 346677777665321 1111111 124555666666654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--C--CC-CeEEEcCCCCCChhhhcccCCCcEEEE---EecCCC---CCcccCH
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--D--PG-DAFLLPTPYYPGFDRDLKWRPGVEIVP---IHCSSS---NGFRITI 173 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~--~g-d~Vlv~~p~y~~~~~~~~~~~g~~~~~---v~~~~~---~~~~~d~ 173 (464)
-..+.++++++++|++..+++... . +| ..|+...-+|++....+....|..... .|..+. -.| .|.
T Consensus 139 --~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~d~ 215 (459)
T PRK11522 139 --GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-GNI 215 (459)
T ss_pred --CCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-CCH
Confidence 123589999999999999988642 1 12 368888888887654332211211111 111000 001 167
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhc
Q 037587 174 SALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMD 252 (464)
Q Consensus 174 ~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~ 252 (464)
+.+++.++.....+.++.+|++.....-.|... |.+.++++.++|+++|+++|.||++.+ |+..+ ..... +.. +
T Consensus 216 ~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG--~GRtG-~~~a~-e~~-g 290 (459)
T PRK11522 216 EAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTG--MGRTG-KMFAC-EHE-N 290 (459)
T ss_pred HHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceec--CCccc-hhhhh-hcc-C
Confidence 888888765432334566655553355567654 666799999999999999999999976 43221 11111 110 0
Q ss_pred cCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh----cccCCCChHHHHHHHHHcCCchhhHHHH
Q 037587 253 RNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM----SSFGLVSSQTQYLLSRMLSDKKFTCNYM 327 (464)
Q Consensus 253 ~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~----~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 327 (464)
..+. +-+|+|.+| .| +.+|.+++.+ .+.+.+... ...+..++++.+++.+.|+--+- +
T Consensus 291 --------v~PD---ivt~gK~lg-gG~~Pigav~~~~-~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~-~--- 353 (459)
T PRK11522 291 --------VQPD---ILCLAKALG-GGVMPIGATIATE-EVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE-Q--- 353 (459)
T ss_pred --------CCCC---EEEechhhh-CCCccceeEEEcH-HHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc-c---
Confidence 1122 238999998 78 6999999854 444433211 11122366666665555442110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----C-C-eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 037587 328 KENRKRLRKRKEMLVSGLKVA----G-I-RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN 401 (464)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~~----g-~-~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~ 401 (464)
...+.+++.-++|.+.|+++ + + .-.. .-|.++.+.+... .....++..++ ++||++.+.. .
T Consensus 354 -~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~Vr-G~Gl~~giel~~~------~~~~~i~~~l~-~~Gvl~~~~~----~ 420 (459)
T PRK11522 354 -NLPAQAEQKGDYLLDGFRQLAREYPDLVQEAR-GKGMLMAIEFVDN------EIGYNFASEMF-RQRVLVAGTL----N 420 (459)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-eceeEEEEEecCc------hHHHHHHHHHH-HCCeEEEecC----C
Confidence 11223333333444444432 2 1 1112 2367888887542 11224566665 6799997542 1
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 402 EPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 402 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
....+|++.+. ++++++++++++|.+++++..
T Consensus 421 ~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~ 453 (459)
T PRK11522 421 NAKTIRIEPPLTLTIEQCEQVLKAARKALAAMR 453 (459)
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence 24679999876 799999999999999987654
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-14 Score=144.87 Aligned_cols=323 Identities=11% Similarity=0.069 Sum_probs=201.2
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCCCCC---CCcEEEeCChHHHHHHHHHHhcC-----------CCCeEEEcCCCCCChhh
Q 037587 83 YHGFPDAKKELVKLMARIRGNKVKFD---PNKLVLTAGSTAANETLMFCLAD-----------PGDAFLLPTPYYPGFDR 148 (464)
Q Consensus 83 ~~g~~~lr~~ia~~~~~~~~~~~~~~---~~~i~it~G~~~al~~~~~~l~~-----------~gd~Vlv~~p~y~~~~~ 148 (464)
..+..++.+.+.+++.+.+|.+-... ...-++|+|+|+++..++.+..+ +.-.|++.+-+|.....
T Consensus 117 sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~K 196 (490)
T PLN02880 117 SPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQK 196 (490)
T ss_pred CcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHH
Confidence 34567888999999988877321000 02367899999998777655321 11245667777887888
Q ss_pred hcccCCCcE---EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEE
Q 037587 149 DLKWRPGVE---IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHI 225 (464)
Q Consensus 149 ~~~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~l 225 (464)
++..+ |+. ++.+|++..+++.+|++.|+++|++..+.+..+-+|+.+-...+||.+- .+++|.++|+++|+|+
T Consensus 197 aa~~l-Glg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD---pl~eI~~i~~~~~iwl 272 (490)
T PLN02880 197 ACQIA-GIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD---PLLELGKIAKSNGMWF 272 (490)
T ss_pred HHHHc-CCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC---cHHHHHHHHHHcCCEE
Confidence 88877 874 7888987656789999999999987666666676666676788999995 5777888999999999
Q ss_pred EEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH-HHHHHHhcccC-
Q 037587 226 VSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV-VSAATKMSSFG- 303 (464)
Q Consensus 226 I~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~-~~~~~~~~~~~- 303 (464)
.+|.+|+......+ . ....+..+ .....+..+++|.++ ...-+|.++.++... ...+.....|.
T Consensus 273 HVDaA~gg~~~~~~--~---~~~~l~gi--------e~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~ 338 (490)
T PLN02880 273 HVDAAYAGSACICP--E---YRHYIDGV--------EEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLK 338 (490)
T ss_pred EEehhhHHHHHhCH--H---HHHHhcCc--------hhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhc
Confidence 99999987543222 1 11122211 123456779999985 777899998865332 22221111110
Q ss_pred ---------------CC-C-----hHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-CCccEE
Q 037587 304 ---------------LV-S-----SQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK-SNAGLF 360 (464)
Q Consensus 304 ---------------~~-s-----~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~f 360 (464)
++ . .+...+....+. .+.+++..+..-+..+++.+.+++. ++++.. +..+ .
T Consensus 339 ~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G-----~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~-i 412 (490)
T PLN02880 339 NKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYG-----VENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFS-L 412 (490)
T ss_pred CccccccCCCChhccCcCCCCcccHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceE-E
Confidence 00 0 111111112222 2234444444446667778888765 777654 4554 5
Q ss_pred EEEecCcc-cccCChh-HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhh
Q 037587 361 CWVDMRHL-LVSNTFE-AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 361 ~~~~l~~~-~~~~~~~-~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~ 432 (464)
+.++++.. ......+ -..++.+++.++..+.+.+... .+..++|+++.. .++++++.+++.|.++.++.
T Consensus 413 v~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~---~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~ 485 (490)
T PLN02880 413 VCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVL---SGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKL 485 (490)
T ss_pred EEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEE---CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56666532 1111001 1124566666555666654332 235689999976 45799999999999887664
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=142.82 Aligned_cols=287 Identities=15% Similarity=0.124 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHcCCCCCC-CCCcEEEeCC-hHHHHHHHHHHhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEEEec
Q 037587 88 DAKKELVKLMARIRGNKVKF-DPNKLVLTAG-STAANETLMFCLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~-~~~~i~it~G-~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~v~~ 163 (464)
++-+.+.+.+.+.++ . +..+|+++.| +|++++.++..++.+|+++++...+..+. ...++.. |+ +..+..
T Consensus 37 ~~~~~~~~~l~~l~~----~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~-g~-~~~~~~ 110 (349)
T TIGR01364 37 AVANEAESDLRELLN----IPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKY-GV-VNVVAS 110 (349)
T ss_pred HHHHHHHHHHHHHhC----CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CC-cEEEec
Confidence 444444444554444 3 2346888877 99999999999999999988887765432 3335555 88 666665
Q ss_pred CCCCCc--ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 164 SSSNGF--RITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 164 ~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
++..+| .++++.++. .+++++|.+++-.|.||...+ ++++.+++++|+|.+.+ ++..
T Consensus 111 ~~~~~~~~~~~~~~~~~--------~~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDavss---~g~~-- 169 (349)
T TIGR01364 111 GKEGNYTKIPDPSTWEI--------SEDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMSSN---ILSR-- 169 (349)
T ss_pred cccCCCCCCCCHHhcCC--------CCCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEcccc---ccCc--
Confidence 422222 345554442 237899999999999999865 45556799999999987 4433
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHH---------H----HhcccCCCChH
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA---------T----KMSSFGLVSSQ 308 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~---------~----~~~~~~~~s~~ 308 (464)
+ .++..+ + +++.|..|.+|.+| +|+++.+++.+.+.. . ....+++++..
T Consensus 170 ~-id~~~~-------------d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~ 231 (349)
T TIGR01364 170 P-IDVSKF-------------G--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTF 231 (349)
T ss_pred c-CCHHHc-------------c--EEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHH
Confidence 1 232221 3 77899999999777 788888555443210 0 01123344445
Q ss_pred HHHHHHHHcCCchhhHH-HHHHHHHHHHHHHHHHHHHHHhC-CCeeecC----CccEEEEEecCcccccCChhHHHHHHH
Q 037587 309 TQYLLSRMLSDKKFTCN-YMKENRKRLRKRKEMLVSGLKVA-GIRCLKS----NAGLFCWVDMRHLLVSNTFEAEKELWK 382 (464)
Q Consensus 309 ~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g~f~~~~l~~~~~~~~~~~~~~l~~ 382 (464)
...++.++|+.-. +. -++...++.++..+++.+.|+++ |+..... ..+..+.+.++.. . . ..++..
T Consensus 232 ~i~al~~al~~l~--~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~----~-~-~~~~~~ 303 (349)
T TIGR01364 232 AIYVSGLVFKWLK--EQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE----E-L-EKRFLK 303 (349)
T ss_pred HHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh----h-H-hHHHHH
Confidence 5555555554211 22 26777788888999999999998 5533321 2323455555532 1 1 123434
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 383 KIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
. +.++|+.+.+|.. ..+.+|+|+.. .++|+++.++++|+++++++
T Consensus 304 ~-~~~~Gi~~~~~~~----~~g~vRvS~~~~nt~edid~l~~al~~~~~~~ 349 (349)
T TIGR01364 304 E-AEERGLVSLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349 (349)
T ss_pred H-HHHCCCcccCCcc----ccCeeEEECcCCCCHHHHHHHHHHHHHHHHhC
Confidence 3 4568997777754 24689999977 78999999999999988764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-14 Score=154.93 Aligned_cols=318 Identities=14% Similarity=0.135 Sum_probs=205.4
Q ss_pred cccccCCCC---CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChH----HHHHHHHHHhcCC-CC----eEEEcCCC
Q 037587 75 RELALFQDY---HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGST----AANETLMFCLADP-GD----AFLLPTPY 142 (464)
Q Consensus 75 ~~~~~Y~~~---~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~----~al~~~~~~l~~~-gd----~Vlv~~p~ 142 (464)
..++-|.|. +|+.++...+.+.+.+..| .+.|.++.+++ +++.++++++.++ || .|+++...
T Consensus 552 ~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g------~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~a 625 (993)
T PLN02414 552 ANIHPFAPVDQAQGYQEMFEDLGDLLCEITG------FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSA 625 (993)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHhC------CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCc
Confidence 444555443 3555444444444444433 38899999999 8999999999866 88 89999998
Q ss_pred CCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC
Q 037587 143 YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR 222 (464)
Q Consensus 143 y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~ 222 (464)
|......+... |++++.++++. +..+|+++|++.+++. ..++++|++++|+|-+|.. +.+++|+++|+++|
T Consensus 626 H~sn~a~a~~~-G~~vv~v~~d~--~G~vDle~L~~~i~~~---~~~ta~V~vt~pSn~gg~e---~~I~eI~~iah~~G 696 (993)
T PLN02414 626 HGTNPASAAMC-GMKIVVVGTDA--KGNINIEELRKAAEAH---KDNLAALMVTYPSTHGVYE---EGIDEICDIIHDNG 696 (993)
T ss_pred CccCHHHHHHC-CCEEEEeccCC--CCCcCHHHHHHHHhcc---CCCeEEEEEECCCcccccc---chHHHHHHHHHHcC
Confidence 98777777665 99999999874 3478999999998731 1268899999999999988 45888999999999
Q ss_pred eEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC----CCccEEEEEEecCHHHHHHHHH
Q 037587 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS----MPGFRVGMIYSNNERVVSAATK 298 (464)
Q Consensus 223 ~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g----~~GlRiG~l~~~~~~~~~~~~~ 298 (464)
+++++|.++...... . .... ..+..+++.|.+|+|+ ..|-.+|++.+.+ .+...+-.
T Consensus 697 alv~vDgAq~~a~~~-l----~~p~-------------~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~-~L~p~lPg 757 (993)
T PLN02414 697 GQVYMDGANMNAQVG-L----TSPG-------------FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS 757 (993)
T ss_pred CEEEEEecCHHhccC-c----CCcc-------------ccCCCEEEecCCccCCcCcccCCCCeeeEEEch-hhcccCCC
Confidence 999999998532111 1 1111 2256678889999775 2345589988744 33222110
Q ss_pred ------------hcc--cCCCCh------HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc
Q 037587 299 ------------MSS--FGLVSS------QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNA 357 (464)
Q Consensus 299 ------------~~~--~~~~s~------~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~ 357 (464)
... .++++. ....++..++.... .+.+++..+....+.+++.+.|.+. ++.+..+.+
T Consensus 758 ~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG--~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~ 835 (993)
T PLN02414 758 HPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG--SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNG 835 (993)
T ss_pred CccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC--HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCC
Confidence 010 122221 12222223333222 3446666666777788888888763 444433333
Q ss_pred cEE--EEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 358 GLF--CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 358 g~f--~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+| +.++++....... ....++.++|+ ++||...- ..|. ..+++||+.+. .+++++++++++|..+.++.+
T Consensus 836 ~~~hEfv~~~~~l~~~~g-~~~~di~krL~-d~Gihapt-~~~p--v~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 836 TCAHEFIIDLRPFKNTAG-IEPEDVAKRLM-DYGFHAPT-MSWP--VPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred CeeeeEEEeccccccccC-CCHHHHHHHHH-HcCcEEee-eccc--cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 211 2245542211111 11246888887 78998643 3342 47789999976 689999999999988876655
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-14 Score=141.81 Aligned_cols=327 Identities=12% Similarity=0.091 Sum_probs=205.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCC---CCCcEEEeCChHHHHHHHHHHhcC-----------CCCeEEEcCCCCCC
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKF---DPNKLVLTAGSTAANETLMFCLAD-----------PGDAFLLPTPYYPG 145 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~~~i~it~G~~~al~~~~~~l~~-----------~gd~Vlv~~p~y~~ 145 (464)
|....+..++.+.+.+++.+.+|.+-.. ....=++++|+++++..++.+..+ +.-.|++.+-+|..
T Consensus 162 ~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~S 241 (539)
T PLN02590 162 WLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSS 241 (539)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHH
Confidence 4344456889999999999887732110 012357789999988877665321 11245567777887
Q ss_pred hhhhcccCCCc---EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC
Q 037587 146 FDRDLKWRPGV---EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR 222 (464)
Q Consensus 146 ~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~ 222 (464)
+..++..+ |+ .++.+|++..+.+.+|+++|+++|++..+.+..+-+|+.+-....||.+ +.+++|.++|+++|
T Consensus 242 v~KAa~il-Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai---Dpl~~Ia~i~~~~g 317 (539)
T PLN02590 242 FRKACLIG-GIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV---DPLVPLGNIAKKYG 317 (539)
T ss_pred HHHHHHHc-CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc---CCHHHHHHHHHHhC
Confidence 88888776 87 5888998866678999999999998765566666666667778899998 67888999999999
Q ss_pred eEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHH-HHHHHHHhcc
Q 037587 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNER-VVSAATKMSS 301 (464)
Q Consensus 223 ~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~-~~~~~~~~~~ 301 (464)
+|+.+|.+|+++....+ . ...+...+ ....-+...++|.+. ...-+|.++.+++. +...+.....
T Consensus 318 ~WlHVDaA~GG~al~~~--~---~r~~~~Gi--------e~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~ 383 (539)
T PLN02590 318 IWLHVDAAYAGNACICP--E---YRKFIDGI--------ENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPE 383 (539)
T ss_pred CeEEEecchhhhhhcCh--h---hHHHhcCC--------ccCCEEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHH
Confidence 99999999998643222 1 22232221 122334569999986 67789988886543 2222211000
Q ss_pred c----------------CC--CC----hHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-CCc
Q 037587 302 F----------------GL--VS----SQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK-SNA 357 (464)
Q Consensus 302 ~----------------~~--~s----~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~ 357 (464)
| ++ .+ .+...++...+. .+-+++..+..-+..+++.+.+++. ++++.. +.-
T Consensus 384 YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G-----~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l 458 (539)
T PLN02590 384 YLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYG-----SENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYF 458 (539)
T ss_pred HhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCce
Confidence 0 00 11 112222222222 3345555555666778888888776 677654 444
Q ss_pred cEEEEEecCcc-cccCCh-hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhC
Q 037587 358 GLFCWVDMRHL-LVSNTF-EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 358 g~f~~~~l~~~-~~~~~~-~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+ .+.+++... ...... ....++.+++.++..+.+.+... .+..++|+++.. .++++++.+++.|.+...+.-
T Consensus 459 ~-iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~---~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 459 S-LVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTAL---SGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT 534 (539)
T ss_pred E-EEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEE---CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4 444555321 111000 11234666665443444544332 234589999976 578999999999998876654
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-13 Score=140.29 Aligned_cols=286 Identities=14% Similarity=0.087 Sum_probs=167.1
Q ss_pred CCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh-h-----cccC-CCcE--EEEEecCCCCCcccCHHH
Q 037587 108 DPNKLVL---TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR-D-----LKWR-PGVE--IVPIHCSSSNGFRITISA 175 (464)
Q Consensus 108 ~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~-~-----~~~~-~g~~--~~~v~~~~~~~~~~d~~~ 175 (464)
..+.+++ .++++.++..++.++++|||+|+..+....++.. . .+.. .+.. ++++..+. ++..+|+++
T Consensus 96 ~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~ 174 (475)
T PLN03226 96 DPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDK 174 (475)
T ss_pred CcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHH
Confidence 4444433 3667788888999999999999986532222211 1 1111 0211 22333343 345689999
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCc
Q 037587 176 LENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNI 255 (464)
Q Consensus 176 l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~ 255 (464)
|++.+.+. ++++|++. .++ +|...+ +++|.++|+++|+++++|+++.-...... ...+. .
T Consensus 175 Le~~l~~~-----~pklIv~~-~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~--~~~~p---~----- 234 (475)
T PLN03226 175 LEKKAMLF-----RPKLIIAG-ASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQ--EAASP---F----- 234 (475)
T ss_pred HHHHHhhc-----CCeEEEEe-cCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCC--CCCCC---C-----
Confidence 99988642 66765553 333 666654 55777889999999999999975434332 11111 0
Q ss_pred CCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHH-------------HHHHHHhcc--cCCCChHHH-HHHHHHcC
Q 037587 256 DESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERV-------------VSAATKMSS--FGLVSSQTQ-YLLSRMLS 318 (464)
Q Consensus 256 ~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~-------------~~~~~~~~~--~~~~s~~~q-~~~~~~l~ 318 (464)
....+++.|++|++ |..| |+++++++.. ....+.... +.+...+.+ .++..+++
T Consensus 235 ------~~~Div~~t~hK~L~GP~G---g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~ 305 (475)
T PLN03226 235 ------EYCDVVTTTTHKSLRGPRG---GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALK 305 (475)
T ss_pred ------CCCeEEEecCcccccCCCc---eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHH
Confidence 13447789999998 4444 8888854321 111221111 111112222 22223232
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-ccEEEEEecCc-ccccCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN-AGLFCWVDMRH-LLVSNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~f~~~~l~~-~~~~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
.-. ....++.++++.++.++|.+.|.+.|+++..+. .+..+++++.. .... ......|++.||.+..+.
T Consensus 306 ~i~--~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~-------~~~~~~L~~~~I~~nk~~ 376 (475)
T PLN03226 306 QAM--TPEFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTG-------SRVEKVLDLAHITLNKNA 376 (475)
T ss_pred HHh--CcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCH-------HHHHHHHHHCCCEECCCC
Confidence 110 111344567777888889999998999987632 24567788742 2221 124555678899997654
Q ss_pred CCC---CCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHHhh
Q 037587 397 SCH---CNEPGWFRICFAN-----ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 397 ~f~---~~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~ 432 (464)
.++ +-.+..+|++... .++++++++.+.|.++++..
T Consensus 377 ~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 377 VPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred CCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 221 1124458984422 57899999999999999854
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-14 Score=135.94 Aligned_cols=171 Identities=15% Similarity=0.278 Sum_probs=132.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~ 164 (464)
..++.+++|+|++ ....+.++++|.|+.+++.++ .+|||.|+++.-+|......+... |++++.+++|
T Consensus 36 v~~FE~~~ae~~G----------~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~-Ga~PVFvDid 104 (374)
T COG0399 36 VRRFEQAFAEYLG----------VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLV-GAKPVFVDID 104 (374)
T ss_pred HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHc-CCeEEEEecC
Confidence 4889999999985 456788999999999999965 589999999999998877777766 9999999998
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-cCCCCCCc
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-FDSPSSSF 243 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~~~~~~~~ 243 (464)
+ +.|.+|++.++++|.+ ++|+|+..+- -|... ++++|.++|++||++||+|.+++... |.+. ..
T Consensus 105 ~-~T~nid~~~ie~aIt~------~tKAIipVhl---~G~~~---dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk--~v 169 (374)
T COG0399 105 P-DTLNIDPDLIEAAITP------RTKAIIPVHL---AGQPC---DMDAIMALAKRHGLPVIEDAAQAHGATYKGK--KV 169 (374)
T ss_pred C-cccCCCHHHHHHHccc------CCeEEEEehh---ccCCC---CHHHHHHHHHHcCCeEEEEcchhccCeecCc--cc
Confidence 6 4689999999999976 7999988754 55553 57788888889999999999997322 2222 11
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCC--CcCCCCCccEEEEEEecCHHHHHHHHHhcc
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSL--SKDFSMPGFRVGMIYSNNERVVSAATKMSS 301 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~--SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~ 301 (464)
.+ + ..+.+.|| .|.++ .| --|.++++++.+.+.++.++.
T Consensus 170 Gt---~--------------Gd~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~ 210 (374)
T COG0399 170 GS---F--------------GDIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRN 210 (374)
T ss_pred cc---c--------------cceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHH
Confidence 11 1 22445677 79887 44 569999988888777765543
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=136.94 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~v~ 162 (464)
..|.+.||+.- ..+..+++++++.|+..++.+++++||.|+++...|.+....+ +.. |+++..++
T Consensus 65 ~~le~~la~LE----------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~-Gi~v~~vd 133 (395)
T PRK08114 65 FSLQEAMCELE----------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKL-GVTTTWFD 133 (395)
T ss_pred HHHHHHHHHHh----------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhc-CcEEEEEC
Confidence 45556666543 2456788888999999999999999999999998997766544 445 99988876
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC--CeEEEEeccccccccCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK--RIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~--~~~lI~Deay~~~~~~~~~ 240 (464)
. .|.+.+++.+++ ++++|++.+|.||+|.+. ++++|+++|+++ |+++|+|.+++-..+
T Consensus 134 ~-------~d~~~l~~~l~~------~TrlV~~EtpsNp~~~v~---DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~---- 193 (395)
T PRK08114 134 P-------LIGADIAKLIQP------NTKVVFLESPGSITMEVH---DVPAIVAAVRSVNPDAVIMIDNTWAAGVL---- 193 (395)
T ss_pred C-------CCHHHHHHhcCC------CceEEEEECCCCCCCEee---cHHHHHHHHHHhCCCCEEEEECCCccccc----
Confidence 3 257888888754 789999999999999996 477788888887 499999999974211
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh-cccC-CCChHHHHHHHHHc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM-SSFG-LVSSQTQYLLSRML 317 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~-~~~~-~~s~~~q~~~~~~l 317 (464)
.....+ +..+++.|.+|.++-+| +-.|.++.+ +...+.++.. ...+ ..++.....+..-|
T Consensus 194 ---~~pl~~-------------GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl 256 (395)
T PRK08114 194 ---FKALDF-------------GIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLRENSYLMGQMVDADTAYMTSRGL 256 (395)
T ss_pred ---cCHHHc-------------CCcEEEEcCcccccCCCcceeEEEEcC-HHHHHHHHHHHHhccCCCCHHHHHHHHcCC
Confidence 122222 56789999999875343 778877664 3333333322 2222 34555555444444
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
+. +.-+.++..+....+.+.|+++
T Consensus 257 ~T-------L~lR~~~~~~na~~va~~L~~h 280 (395)
T PRK08114 257 RT-------LGVRLRQHEESSLKVAEWLAEH 280 (395)
T ss_pred Cc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 43 3444556666778888888876
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-13 Score=136.61 Aligned_cols=359 Identities=13% Similarity=0.048 Sum_probs=191.1
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ...........+....+|+.+.+...
T Consensus 46 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~-------------~~~~~~~~~~~~~~~~lae~L~~~~p-- 110 (457)
T PRK05639 46 LIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVAL-------------IQHSMIGYTHSERAIRVAEKLAEISP-- 110 (457)
T ss_pred EEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHh-------------ccccccCccCCHHHHHHHHHHHhhCC--
Confidence 4444556778999765 2333 346677776664221 11110000112344455555543321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC--------c-----EEEEEecCCCC--
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG--------V-----EIVPIHCSSSN-- 167 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g--------~-----~~~~v~~~~~~-- 167 (464)
...+.+.++++++|++..+++... ....+|+....+|++....+....+ . .++.+|.....
T Consensus 111 --~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 188 (457)
T PRK05639 111 --IENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRN 188 (457)
T ss_pred --CCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccc
Confidence 223689999999999999988742 2346788888888775432111101 0 12233322100
Q ss_pred Ccc----cCHHH--------HHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 168 GFR----ITISA--------LENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 168 ~~~----~d~~~--------l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
.|. -+.+. +++.+........++.+|++.-.....|.. .|.+.++++.++|+++|+++|.||++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG- 267 (457)
T PRK05639 189 PWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTG- 267 (457)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhc-
Confidence 000 02222 222221100113467666664224555764 4677899999999999999999999986
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-hcccCCCChHHHHHH
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-MSSFGLVSSQTQYLL 313 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-~~~~~~~s~~~q~~~ 313 (464)
|+..+ .... .+.. + ..+.++ +|+|.+| .|+.+|.+++++ .+.+.... ....+..++++.+++
T Consensus 268 -~GrtG-~~~a-~~~~-g--------v~PDiv---~~gK~l~-gG~pi~av~~~~-~i~~~~~~~~~~T~~g~p~~~aaa 330 (457)
T PRK05639 268 -IGRTG-KWFA-SEWF-E--------VKPDLI---IFGKGVA-SGMGLSGVIGRK-ELMDLTSGSALLTPAANPVISAAA 330 (457)
T ss_pred -cCcCc-hHHH-HHhc-C--------CCCCEE---Eechhhc-CCCcceeEEehH-HHHhhcCCCcccCCCcCHHHHHHH
Confidence 43221 1111 1111 1 112333 4899998 899999999944 44442211 111122455555555
Q ss_pred HHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcC
Q 037587 314 SRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV----AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVG 389 (464)
Q Consensus 314 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~g 389 (464)
.+.|+--+- ++.+++. ++.-++|.+.|++ +++......-|+++.+.+..............+...++ ++|
T Consensus 331 ~a~l~~l~~-~~l~~~~----~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~-~~G 404 (457)
T PRK05639 331 EATLEIIEE-ENLLKNA----LKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAF-ELG 404 (457)
T ss_pred HHHHHHHHH-ccHHHHH----HHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHH-hCC
Confidence 554442110 1112222 2233333444433 34332223445777777742211111122234555555 679
Q ss_pred eEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 390 LNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 390 I~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
|++.+... ..+.+|+.... ++++++++++++|.+++++.
T Consensus 405 v~~~~~g~----~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 405 LILPSYGM----FGNVIRITPPLVITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred eEEeecCC----CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 99976421 24679999877 79999999999999998765
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-13 Score=134.91 Aligned_cols=362 Identities=11% Similarity=0.062 Sum_probs=193.4
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ...++... ..+....+|+.+.+..+
T Consensus 40 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~-------------~~~~~~~~-~~~~~~~lae~l~~~~~-- 103 (451)
T PRK07678 40 WVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKT-------------LSYFPLTQ-SHEPAIKLAEKLNEWLG-- 103 (451)
T ss_pred EEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHh-------------cCcccccc-CCHHHHHHHHHHHHhCC--
Confidence 4444556778998755 2223 346666766664221 11111111 13344556666654322
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCCc------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~ 164 (464)
..+.++++++++|++..+++.... +| .+|+...-+|++....+....|. .+..++.+
T Consensus 104 ---~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~ 180 (451)
T PRK07678 104 ---GEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPP 180 (451)
T ss_pred ---CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCC
Confidence 235799999999999998886421 23 57888888888754332211111 11222211
Q ss_pred CCCCccc---------C---HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 165 SSNGFRI---------T---ISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 165 ~~~~~~~---------d---~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
+.+.. + ++.+++.++. ....++.+||+.-...-.|.+ .|.+.++++.++|+++|+++|.||++
T Consensus 181 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~ 256 (451)
T PRK07678 181 --DCYRMPGIESEDIYDLECVKEIDRVMTW--ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVI 256 (451)
T ss_pred --ccccccccCChHHHHHHHHHHHHHHHHh--cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh
Confidence 11111 1 1223444431 113466665554224445655 56778999999999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh--------ccc
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM--------SSF 302 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~--------~~~ 302 (464)
.++.-.+. .... +.. + ..+. +-+++|.+| .| +.+|.+++++ .+.+.+... ...
T Consensus 257 tGfGRtG~---~~~~-~~~-g--------v~PD---ivt~gK~lg-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~h~~T 318 (451)
T PRK07678 257 CGFGRTGK---AFGF-MNY-G--------VKPD---IITMAKGIT-SAYLPLSATAVKK-EIYEAFKGKGEYEHFRHVNT 318 (451)
T ss_pred hcCCcCch---hHHH-Hhc-C--------CCCC---EEEeecccc-cCCcceeEEEEcH-HHHHHHhccCcccccccCCC
Confidence 87422221 1111 111 1 1122 338899998 77 7999999954 455544321 112
Q ss_pred CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccC---ChhHHHH
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN---TFEAEKE 379 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~---~~~~~~~ 379 (464)
+..++++.+++.+.|+--+- +...++.++.-+..++.|.+.++++++......-|+++-+.+....... +......
T Consensus 319 ~~gnp~~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~ 397 (451)
T PRK07678 319 FGGNPAACALALKNLEIMEN-ENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVAS 397 (451)
T ss_pred CCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHH
Confidence 23566666666665542110 1112222222122223333444444433222234567777774321110 1112234
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++..++ ++||++.+.....+.....+|++... ++++++++++++|.+++++.+
T Consensus 398 i~~~l~-~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (451)
T PRK07678 398 VVAACK-EKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK 451 (451)
T ss_pred HHHHHH-HCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 555554 67999976422111223579999876 699999999999999997653
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-13 Score=132.81 Aligned_cols=210 Identities=23% Similarity=0.280 Sum_probs=149.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~v 161 (464)
...|.++++.+- ..++.+.++++..||..++.+++++||.|+++...|++....+ +.. |+++..+
T Consensus 65 ~~~lE~~~a~LE----------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~-gi~~~~~ 133 (396)
T COG0626 65 RDALEEALAELE----------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKF-GVEVTFV 133 (396)
T ss_pred HHHHHHHHHHhh----------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhc-CeEEEEE
Confidence 356666666664 2567889999999999999999999999999999998866553 344 8888877
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.. +.+.+++++.+ +++++|++-.|.|||-.+ .++.+|+++|+++|+++|+|..|+...+-.+
T Consensus 134 d~~-------~~~~~~~~~~~-----~~tk~v~lEtPsNP~l~v---~DI~~i~~~A~~~g~~vvVDNTfatP~~q~P-- 196 (396)
T COG0626 134 DPG-------DDEALEAAIKE-----PNTKLVFLETPSNPLLEV---PDIPAIARLAKAYGALVVVDNTFATPVLQRP-- 196 (396)
T ss_pred CCC-------ChHHHHHHhcc-----cCceEEEEeCCCCccccc---ccHHHHHHHHHhcCCEEEEECCcccccccCh--
Confidence 642 34566665542 379999999999999888 4688899999999999999999985433222
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHH--HHhcccC-CCChHHHHHHHHHc
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAA--TKMSSFG-LVSSQTQYLLSRML 317 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~--~~~~~~~-~~s~~~q~~~~~~l 317 (464)
..+ +..|+++|.+|.++ -.-+=.|.++++++.+.+.+ ......+ .+++.....+..-+
T Consensus 197 -----L~~-------------GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGl 258 (396)
T COG0626 197 -----LEL-------------GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGL 258 (396)
T ss_pred -----hhc-------------CCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhcc
Confidence 112 56789999999995 23355676776777776654 2222233 35566655555544
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
+. +.-+.++..++...+.+.|+++
T Consensus 259 kT-------L~~Rm~~~~~nA~~IA~~L~~~ 282 (396)
T COG0626 259 RT-------LALRMERHNENALKIAEFLADH 282 (396)
T ss_pred ch-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 44 3444555666778888888876
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=141.90 Aligned_cols=282 Identities=16% Similarity=0.181 Sum_probs=174.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCC-CCCcEEEeCC-hHHHHHHHHHHhcC---CCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKF-DPNKLVLTAG-STAANETLMFCLAD---PGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~-~~~~i~it~G-~~~al~~~~~~l~~---~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
..+.|+.++++++ + ++++|++|+| +|++++.++..++. +||.|++ .|........++.. |+++..
T Consensus 46 ~~~~r~~l~~l~~--------~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~-g~~~~~ 115 (355)
T cd00611 46 VNEAESDLRELLN--------IPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-GAWSAKAAKEAKRY-GGVVVI 115 (355)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-CHHHHHHHHHHHhc-CCCcEE
Confidence 3566777777775 3 4678999988 99999999999987 4555444 22111122245555 888888
Q ss_pred EecCCCCCcccC-HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 161 IHCSSSNGFRIT-ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 161 v~~~~~~~~~~d-~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
++.+..+++. + ++..+..+ .+++++|.+++-.|.||..++ ++++.+|+++++|.+.+ ++..
T Consensus 116 ~~~~~~g~~~-~~~~~~~~~~------~~~~~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs---~g~~ 177 (355)
T cd00611 116 VAAKEEGKYT-KIPDVETWDL------APDAAYVHYCSNETIHGVEFD--------EVPDTGGVPLVADMSSN---ILSR 177 (355)
T ss_pred EecccccCCC-CCCCHhhcCC------CCCCCEEEEeCCcccccEEcc--------eecccCCCeEEEEcccc---ccCC
Confidence 8875432231 2 22222222 247899999999999999743 23445899999999997 4433
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH-------------HhcccCCCC
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT-------------KMSSFGLVS 306 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~-------------~~~~~~~~s 306 (464)
+ .++.++ + +.+.|..|.+|.+| +|+++++++.+.+... ....+++++
T Consensus 178 --~-idv~~~-------------~--~~~ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn 237 (355)
T cd00611 178 --P-IDVSKF-------------G--VIYAGAQKNLGPAG--VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPP 237 (355)
T ss_pred --C-CCHHHh-------------C--EEEeecccccCCCc--eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCCh
Confidence 1 232222 3 35567899999777 7888885544432110 001133444
Q ss_pred hHHHHHHHHHcCCchhhHH--HHHHHHHHHHHHHHHHHHHHHhC-CCe-e-ec--CCccEEEEEecCcccccCChhHHHH
Q 037587 307 SQTQYLLSRMLSDKKFTCN--YMKENRKRLRKRKEMLVSGLKVA-GIR-C-LK--SNAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 307 ~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~-g~~-~-~~--~~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
.....++.++++- +.+ -++...++.++..+++.+.|+++ |+. . .. ...+..+.+.++.. ....+
T Consensus 238 ~~~i~~L~aal~~---l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~------~l~~~ 308 (355)
T cd00611 238 TFAIYMMGLVLKW---LKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE------ELEKE 308 (355)
T ss_pred HHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh------hhhHH
Confidence 4444555555442 222 26677778888889999999988 752 1 11 12333455555532 11112
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
+... +.+.|+.+.++.. ..+.+|+|+.. .++++++.++++|+++.
T Consensus 309 ~~~~-~~r~G~~~~~~~~----~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 309 FLKE-AEAAGMIGLKGHR----SVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred HHHH-HHHCCCcccCCCc----ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 3233 3467998666653 24689999987 79999999999998853
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-13 Score=136.56 Aligned_cols=295 Identities=14% Similarity=0.095 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC----CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc---------ccCC
Q 037587 88 DAKKELVKLMARIRGNKVKFDP----NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL---------KWRP 154 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~----~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~---------~~~~ 154 (464)
++.....++..+.++ ++. .||-.- +++.|+..++.+|++|||+|+..+..|+++.... ...
T Consensus 194 ~iE~la~era~~lF~----~~~~~~gaNVQp~-SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~s- 267 (586)
T PLN02271 194 QIERLCCERALAAFG----LDSEKWGVNVQPY-SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGA- 267 (586)
T ss_pred HHHHHHHHHHHHHhC----Ccccccccceeec-cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccc-
Confidence 443333444444444 444 566665 5566777888899999999999988887765432 112
Q ss_pred CcE--EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 155 GVE--IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 155 g~~--~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
|.. ++++++++ ....+|.+++++.... .++|+|++..-.+| ..++ ++++.++|+++|+++++|.++.
T Consensus 268 G~~~~~vpY~~d~-~~g~IDyd~lek~a~~-----~rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~ 336 (586)
T PLN02271 268 SIFFESLPYKVNP-QTGYIDYDKLEEKALD-----FRPKILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHI 336 (586)
T ss_pred cceEEEEEccccc-ccCccCHHHHHHHhhh-----cCCeEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECccc
Confidence 544 44444543 3456899999985543 38998888666777 4454 5566777789999999999997
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCH-------------------HHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE-------------------RVV 293 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~-------------------~~~ 293 (464)
....... .+++.. ....++..|.+|++ .|-|-|.|+.+++ .+.
T Consensus 337 aGLIa~g--~~~sP~--------------~~aDvvt~TTHKtL--rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~ 398 (586)
T PLN02271 337 SGLVAAK--ECVNPF--------------DYCDIVTSTTHKSL--RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFE 398 (586)
T ss_pred ccccccC--cCCCCC--------------cCCcEEEeCCcccC--CCCCceEEEecccccccccCCccccccccccHHHH
Confidence 5444332 111111 13457889999998 5666688887432 132
Q ss_pred HHHHHhcccC-CCChH--HHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CccEEEEEecC
Q 037587 294 SAATKMSSFG-LVSSQ--TQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS-NAGLFCWVDMR 366 (464)
Q Consensus 294 ~~~~~~~~~~-~~s~~--~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~f~~~~l~ 366 (464)
+.+.....+. ..++. ..++++.++. .++| ++..+++.++.+.|.+.|.+.|+++... ..+..+++++.
T Consensus 399 ~kI~~aVfPglqgGphn~~IAalAvalkea~~~ef-----k~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~ 473 (586)
T PLN02271 399 EKINFAVFPSLQGGPHNNHIAALAIALKQVATPEY-----KAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLT 473 (586)
T ss_pred HHhhcccCCccccChhHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCc
Confidence 3332222112 11211 1222223333 3444 3444555667888999999999988753 33567888986
Q ss_pred ccc-ccCChhHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHH
Q 037587 367 HLL-VSNTFEAEKELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFAN-----ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 367 ~~~-~~~~~~~~~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~ 430 (464)
... .+ ..+.+.|++.||.+. |+.. .+..++.+||+... ..+++++++.+-|.++++
T Consensus 474 ~~g~~G-------~~ae~~Le~~~I~~Nkn~iP~d~-~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 474 TLGLTG-------KNYEKVCEMCHITLNKTAIFGDN-GTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred ccCCCH-------HHHHHHHHHcCeEeccccCCCCC-CCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 431 11 346777888999985 3331 11235569998744 357889998888888876
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-13 Score=137.64 Aligned_cols=155 Identities=17% Similarity=0.269 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~~g~~~~~v~ 162 (464)
..+++.+|++.+ . ...|++++|. .++.+++.+++++||+|+++...|.+... .+... |++++.++
T Consensus 72 ~~le~~la~l~g--------~-~~~v~fsSG~-~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~-Gi~v~~vd 140 (437)
T PRK05613 72 EALENRIASLEG--------G-VHAVAFASGQ-AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRL-GIEVTFVE 140 (437)
T ss_pred HHHHHHHHHHhC--------C-CeEEEeCCHH-HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhc-CeEEEEEC
Confidence 566677777664 2 3445555555 78888888889999999999999987632 23445 99999887
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
++ .|++.+++++++ ++++|++.+|.||+|.+.+ +++|.++|+++|+++|+|.+++....
T Consensus 141 -~~-----~d~e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~------ 199 (437)
T PRK05613 141 -NP-----DDPESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL------ 199 (437)
T ss_pred -CC-----CCHHHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc------
Confidence 22 268889888765 7888998899999998865 77788888899999999999863211
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEe
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS 287 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~ 287 (464)
.....+ +..+++.|++|.++-.|--+|-++.
T Consensus 200 -~~p~~~-------------GaDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 200 -VRPLEL-------------GADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred -cChHHh-------------CCCEEEeeccceecCCCcceeEEEE
Confidence 111112 4567899999999755544444433
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=137.21 Aligned_cols=284 Identities=18% Similarity=0.268 Sum_probs=176.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~ 164 (464)
..++.++++++++ ..+++.+++++.||.+++.++ +++||+|+++..+|......+... |++++.++++
T Consensus 27 ~~~fE~~~a~~~g----------~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~-G~~pv~~Di~ 95 (363)
T PF01041_consen 27 VEEFEKEFAEYFG----------VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWA-GAEPVFVDID 95 (363)
T ss_dssp HHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHT-T-EEEEE-BE
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHh-ccEEEEEecc
Confidence 4788888888875 567899999999999999997 468999999999999888888877 9999999998
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-cCCCCCCc
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-FDSPSSSF 243 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~~~~~~~~ 243 (464)
+ +.+.+|++.+++.+.+ ++++|++++. -|... ++.+|.++|+++|++||+|.+++... +.+.
T Consensus 96 ~-~~~~id~~~~~~~i~~------~t~ai~~~h~---~G~~~---d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~---- 158 (363)
T PF01041_consen 96 P-ETLNIDPEALEKAITP------KTKAILVVHL---FGNPA---DMDAIRAIARKHGIPLIEDAAQAFGARYKGR---- 158 (363)
T ss_dssp T-TTSSB-HHHHHHHHHT------TEEEEEEE-G---GGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETTE----
T ss_pred C-CcCCcCHHHHHHHhcc------CccEEEEecC---CCCcc---cHHHHHHHHHHcCCcEEEccccccCceeCCE----
Confidence 5 4789999999999986 8899998854 56553 68889999999999999999998422 1111
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCC--CcCCCCCccEEEEEEecCHHHHHHHHHhcccC------------------
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSL--SKDFSMPGFRVGMIYSNNERVVSAATKMSSFG------------------ 303 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~--SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~------------------ 303 (464)
.+.. -..+.+.|| +|.+. .| --|.++++++.+.+.++.+..++
T Consensus 159 -~~G~--------------~gd~~~fSf~~~K~i~-~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n 221 (363)
T PF01041_consen 159 -PVGS--------------FGDIAIFSFHPTKIIT-TG-EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYN 221 (363)
T ss_dssp -ETTS--------------SSSEEEEESSTTSSS--SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B
T ss_pred -eccC--------------CCCceEecCCCCCCCc-CC-CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcc
Confidence 1111 123456676 68884 33 35999998888877776654322
Q ss_pred -CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec--CCc---cE-EEEEecCcccccCChh
Q 037587 304 -LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK--SNA---GL-FCWVDMRHLLVSNTFE 375 (464)
Q Consensus 304 -~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~--~~~---g~-f~~~~l~~~~~~~~~~ 375 (464)
.++.+..+.+..-|+. +++..+.-++....+.+.|... ++...+ +.. ++ .+.+.++.... .
T Consensus 222 ~rm~~~~AAigl~QL~~-------L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~----~ 290 (363)
T PF01041_consen 222 FRMSELQAAIGLAQLKR-------LDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL----A 290 (363)
T ss_dssp -B-BHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----S
T ss_pred cccHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc----c
Confidence 1223333333333332 2333333344556667777776 443322 221 22 22334442211 0
Q ss_pred HHHHHHHHHHHhcCeEEeCCCC--CCC-----C--------C-------CCeEEEEeec-CCHHHHHHHHHHHH
Q 037587 376 AEKELWKKIIFEVGLNISPGSS--CHC-----N--------E-------PGWFRICFAN-ITEETLQVALQRIK 426 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~pg~~--f~~-----~--------~-------~~~~Ris~~~-~~~e~l~~~l~~l~ 426 (464)
.-.++...| ++.||...+... .+. . - ...+-+.+.. +++++++.+++.|+
T Consensus 291 ~rd~l~~~L-~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 291 DRDELVEAL-RARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp THHHHHHHH-HHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 122455555 567999987552 110 0 0 1235666554 68888888888764
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-12 Score=132.70 Aligned_cols=357 Identities=12% Similarity=0.047 Sum_probs=195.6
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCC-CCcHHHHHHHHHHHHHHcCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDY-HGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~~~~~~~~ 103 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+ ....+... ....+.+..+|+.+.+...
T Consensus 43 ~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~-------------~~~~~~~~~~~~~~~~~~lAe~L~~~~p- 108 (461)
T PRK07482 43 RITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAK-------------ELAYYHTYVGHGTEASITLSKRIIDRAP- 108 (461)
T ss_pred EEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHH-------------hcCccccccccCCHHHHHHHHHHHHhCC-
Confidence 4445566788998865 3333 34667777766532 11111111 1124566667777654321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc------C-C-CCeEEEcCCCCCChhhhcccCCCc------------EEEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA------D-P-GDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~ 163 (464)
-..+.++++++++|++..+++... . + ..+|+...-+|++....+....|. .+..++.
T Consensus 109 ---~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~ 185 (461)
T PRK07482 109 ---AGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEA 185 (461)
T ss_pred ---CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCC
Confidence 134689999999999999998752 1 2 257888888888753221111110 1111211
Q ss_pred CC--CC---C-----c-ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 164 SS--SN---G-----F-RITISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 164 ~~--~~---~-----~-~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
+. .. + + .-+++.+++.+.+ ....++.+|++.-...-.|.. .+.+-+++|.++|++||+++|.||+.
T Consensus 186 p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~ 263 (461)
T PRK07482 186 PHYYRRADAGMSEEQFSAYCADELEELILA--EGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVV 263 (461)
T ss_pred CccccccccCCCHHHHHHHHHHHHHHHHHh--cCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccc
Confidence 10 00 0 0 0024555665532 112356665554224445666 56778999999999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc-EEEEEEecCHHHHHHHHH---------hcc
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF-RVGMIYSNNERVVSAATK---------MSS 301 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl-RiG~l~~~~~~~~~~~~~---------~~~ 301 (464)
.++.-.+. .+ . .+.. + ..+.++ +++|.+| .|+ .+|.+++. +.+.+.+.. ...
T Consensus 264 tGfGRtG~--~~-a-~~~~-g--------v~PDiv---~~gKgl~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~ 325 (461)
T PRK07482 264 TGFGRLGS--MF-G-SDHY-G--------IEPDLI---TVAKGLT-SAYAPLSGSIVG-EKVWDVLEQGSDEHGAIGHGW 325 (461)
T ss_pred cCCCcCcc--hh-h-HHhc-C--------CCCCEE---EEccccc-cCccccceeeec-HHHHHHHhcccccCCccccCC
Confidence 87422222 11 1 1111 0 123333 6799998 785 89988884 445444431 111
Q ss_pred cCCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCC-hh--
Q 037587 302 FGLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNT-FE-- 375 (464)
Q Consensus 302 ~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~-~~-- 375 (464)
.+..++++.+++.+.|+ +.+. .+..+++-+.+. +.|.+.++++++......-|+++.+++........ ..
T Consensus 326 T~~gnpl~~Aaa~a~L~~~~~~~l-~~~~~~~g~~l~---~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~ 401 (461)
T PRK07482 326 TYSGHPICAAAALANLDILERENL-VGNAAEVGAYFR---ARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPA 401 (461)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHH---HHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChh
Confidence 12356677666666554 2222 222222222222 22333333444322222446788888853211110 01
Q ss_pred --HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 376 --AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 376 --~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
....++..++ ++||+++++. ..+.+|+..+. ++++++++++++|.+++++.
T Consensus 402 ~~~~~~i~~~~~-~~Gvl~~~~~-----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 402 LKIGPQVSAAAL-ERGVIARAMP-----HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred hHHHHHHHHHHH-HCCcEEecCC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1224555555 6799987532 12468988665 79999999999999998764
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=137.76 Aligned_cols=311 Identities=12% Similarity=0.073 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCC-C-CcEEE--eCChHHHHHHHHHHhcC--------CC-----CeEEEcCCCCCChhhh
Q 037587 87 PDAKKELVKLMARIRGNKVKFD-P-NKLVL--TAGSTAANETLMFCLAD--------PG-----DAFLLPTPYYPGFDRD 149 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~-~-~~i~i--t~G~~~al~~~~~~l~~--------~g-----d~Vlv~~p~y~~~~~~ 149 (464)
.++.+.+.+++.+.+| ++ + +++.. |+|+||++.+++.+... .| -.|++..-.|..+...
T Consensus 79 ~~le~~~~~~la~llg----~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka 154 (431)
T TIGR01788 79 AEIENRCVNMLADLWH----APAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKF 154 (431)
T ss_pred HHHHHHHHHHHHHHhC----CCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHH
Confidence 3555555566655554 44 2 45544 89999999998865421 12 3688888889888888
Q ss_pred cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC------Ce
Q 037587 150 LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK------RI 223 (464)
Q Consensus 150 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~------~~ 223 (464)
++.. |+++..+|+++ +++.+|+++|++++++ ++.+|+++..+|.||.+-| +++|+++|+++ ++
T Consensus 155 ~~~l-g~~v~~i~~d~-~~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~~ 223 (431)
T TIGR01788 155 ARYF-DVELREVPMDP-GRYVIDPEQVVEAVDE------NTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWDI 223 (431)
T ss_pred HHHc-CceeEEEecCC-CceeeCHHHHHHHHhh------CCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCCc
Confidence 8777 99999999875 4567999999999976 7788899999999999965 66677888888 89
Q ss_pred EEEEecccccccc--CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHH-HHHHHHHh
Q 037587 224 HIVSDEIYSGTVF--DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNER-VVSAATKM 299 (464)
Q Consensus 224 ~lI~Deay~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~-~~~~~~~~ 299 (464)
++.+|.+|+.+.. .-.. ....+ . ......+.-|.+|.+ |..| +|.++.+++. +...+...
T Consensus 224 ~~HvDaaq~g~~~p~~~~~-~~~~~----~---------~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~ 287 (431)
T TIGR01788 224 PIHVDAASGGFIAPFVYPD-LEWDF----R---------LPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFH 287 (431)
T ss_pred eEEEecccHHHHHHHhCCC-chhhc----C---------CCCceEEEECchhccCCCCC--cEEEEEeChHHcchhheec
Confidence 9999999986431 1110 00111 0 113344567999986 5445 8988876543 22222111
Q ss_pred cccC---------CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC--CccEEEEEecCc
Q 037587 300 SSFG---------LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS--NAGLFCWVDMRH 367 (464)
Q Consensus 300 ~~~~---------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~f~~~~l~~ 367 (464)
..+. ..+...-.++..++.-..+-..-+++..+...+..+++.+.|++. ++++..+ ..+ .+.+++..
T Consensus 288 ~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~-iV~Fr~~~ 366 (431)
T TIGR01788 288 VNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIP-LVAFKLKD 366 (431)
T ss_pred ccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCce-EEEEEeCC
Confidence 0010 011111111222221001112334555666667778888889887 4777643 454 45455542
Q ss_pred ccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 368 LLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-CNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 368 ~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
... .. ....++.+.| .++|+.+....... ..+.-++|+++.. .+++.++.+++.|+.++...
T Consensus 367 ~~~-~~-~~~~~l~~~L-~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 367 DAD-PG-YTLYDLSHRL-RERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCC-CC-cCHHHHHHHH-HHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 110 01 1122455555 56798753222111 1123468999864 67899999999999988764
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.63 E-value=9e-13 Score=133.82 Aligned_cols=339 Identities=14% Similarity=0.109 Sum_probs=188.4
Q ss_pred CCCCCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+- +.+ ..|.+.+++.++.+ ....|.. ..++...+|+.+.+...
T Consensus 92 ~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~-------------~~~~~~~---~~~~~~~lAe~l~~~~p-- 153 (474)
T PLN02482 92 YAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMK-------------KGTSFGA---PCLLENVLAEMVIDAVP-- 153 (474)
T ss_pred EEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHh-------------hCCCCCC---CCHHHHHHHHHHHHhCC--
Confidence 44445567789987653 223 34677777766532 1222221 23555666777654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccC-------------CCc------EEEEEec
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWR-------------PGV------EIVPIHC 163 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------~g~------~~~~v~~ 163 (464)
..+.+.++++++|++..+++... ....+|+...-+|++....+... .|. .++.++
T Consensus 154 ---~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 229 (474)
T PLN02482 154 ---SVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAP- 229 (474)
T ss_pred ---CCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEec-
Confidence 24789999999999999988642 23367888888888864321100 011 011111
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCC-HHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMT-HQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s-~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
| -|++.+++.+++ ...++.+|++ .| ..-.|.+.+ .+.++++.++|+++|+++|+||++.++ ..+.
T Consensus 230 -----~-nd~~~l~~~l~~---~~~~iAavI~-Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~-- 296 (474)
T PLN02482 230 -----Y-NDLEAVKKLFEA---NKGEIAAVIL-EPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY-- 296 (474)
T ss_pred -----C-CChHHHHHHHHh---CCCceEEEEE-CCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc--
Confidence 1 167888887754 2235655554 45 455676655 678999999999999999999999764 2222
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-----cCCCChHHHHHHHHH
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-----FGLVSSQTQYLLSRM 316 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~ 316 (464)
....+... ..+. +.+|+|.+| .|+.+|.+++ ++.+.+.+..... .+..++++.+++.+.
T Consensus 297 --~ga~~~~g---------v~PD---i~t~gK~lg-gG~Pigav~g-~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~ 360 (474)
T PLN02482 297 --GGAQEYFG---------ITPD---LTTLGKVIG-GGLPVGAYGG-RREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360 (474)
T ss_pred --chHhHHhC---------CCCC---EEEecchhh-CCCceEEEEE-cHHHHHhhccCCCcccccCcchhHHHHHHHHHH
Confidence 11111111 1122 348899998 8999999988 4555555432111 111355555555444
Q ss_pred cC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cCCccEEEEEecCcc-c------ccCChhHHHHHHHHHH
Q 037587 317 LS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL-KSNAGLFCWVDMRHL-L------VSNTFEAEKELWKKII 385 (464)
Q Consensus 317 l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~f~~~~l~~~-~------~~~~~~~~~~l~~~ll 385 (464)
|+ +++. .++..+.-+..++.|.+...+.|+++. ...+|++ .+.+... . ...+......++..++
T Consensus 361 L~~l~~~~~----~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~-gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~ 435 (474)
T PLN02482 361 LKRLQQPGT----YEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMF-GFFFTEGPVYNFADAKKSDTAKFARFHRGML 435 (474)
T ss_pred HHHHhccCH----HHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEE-EEEEecCCccChhhhccCCHHHHHHHHHHHH
Confidence 33 3222 222222222222333333344455544 2334443 2333211 0 0111122234566665
Q ss_pred HhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 386 FEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 386 ~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
++||++.|... . .++ +++. +++++++++++++.+++++
T Consensus 436 -~~Gv~~~~~~~-~---~~~--psl~-ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 436 -EEGVYLAPSQF-E---AGF--TSLA-HTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred -HCCeEEeccCC-C---CCc--CCCC-CCHHHHHHHHHHHHHHHHh
Confidence 67999987422 1 111 3444 5899999999999998864
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=135.12 Aligned_cols=293 Identities=18% Similarity=0.194 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC----cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccC---------
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPN----KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR--------- 153 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~----~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~--------- 153 (464)
+++.+...++..+.++ ++++ +|-. .+++.|+..++.+|++|||+|+..++..+++...-...
T Consensus 65 d~iE~la~~ra~~lF~----~~~~~w~anvqp-~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~ 139 (399)
T PF00464_consen 65 DEIEELAIERAKELFG----AEPKEWYANVQP-HSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASG 139 (399)
T ss_dssp HHHHHHHHHHHHHHHT-----STTTEEEE----SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHH
T ss_pred hHHHHHHHHHHHHHhC----CCcccceEEeec-CCchHHHHHHHHHHHhhcCcEEecChhhccccccccccccccccccc
Confidence 4444445555555665 5543 3444 45566888999999999999999998887664321110
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
...+++.++++++ ...+|.+++++.+++. +|++|++.-.+.|- . -+.+++.++|.+.|.+++.|-++..
T Consensus 140 ~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~~--~---~d~~~~reIad~vga~l~~D~sH~~ 208 (399)
T PF00464_consen 140 LYFESVPYPVDPD-TGLIDYDELEKLAKEH-----KPKLIICGASSYPR--P---IDFKRFREIADEVGAYLMADISHIA 208 (399)
T ss_dssp HHSEEEEEEB-TT-TSSB-HHHHHHHHHHH-------SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTH
T ss_pred ceEEEEeeeeecC-CCeECHHHHHHHHhhc-----CCCEEEECchhccC--c---cCHHHHHHHHHhcCcEEEecccccc
Confidence 0357888888864 5689999999999886 89987775433321 2 3567777778889999999999964
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEec-------------CHHHHHHHHHhc
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSN-------------NERVVSAATKMS 300 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~-------------~~~~~~~~~~~~ 300 (464)
....+. .+++.... ..++.+|.+|+| +|-|-|.|.++ ++.+.+.+.+..
T Consensus 209 GLIa~g--~~~~P~~~--------------ADvvt~sThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~av 270 (399)
T PF00464_consen 209 GLIAGG--LFPNPFPY--------------ADVVTGSTHKTL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAV 270 (399)
T ss_dssp HHHHTT--SS--GCCT--------------SSEEEEESSGGG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHH
T ss_pred cceehh--eecCcccc--------------ceEEEeeccccc--cccCceEEEEcCCccccCCcccccHHHHHHHhcccc
Confidence 433333 23332222 337789999998 78899999996 366777666554
Q ss_pred ccCCC-ChHHH--HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCccEEEEEecCcc-cccCChh
Q 037587 301 SFGLV-SSQTQ--YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-SNAGLFCWVDMRHL-LVSNTFE 375 (464)
Q Consensus 301 ~~~~~-s~~~q--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~f~~~~l~~~-~~~~~~~ 375 (464)
.+... ++... ++.+.++.. ......++..+++-++.+.|.+.|.+.|+++.. ...+..+|+++... .+.
T Consensus 271 fP~~qg~~h~~~iaalAval~e--a~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g---- 344 (399)
T PF00464_consen 271 FPGLQGGPHMHRIAALAVALKE--ALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDG---- 344 (399)
T ss_dssp TTTT-SS--HHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-H----
T ss_pred CCCcccCcchhHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccch----
Confidence 33322 22211 122222221 111223445556667888899999999999874 23356788998642 111
Q ss_pred HHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeecC-----CHHHHHHHHH
Q 037587 376 AEKELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFANI-----TEETLQVALQ 423 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~~-----~~e~l~~~l~ 423 (464)
..+...|++.||.+. |+.. .+..+..+||+...+ .+++++++.+
T Consensus 345 ---~~a~~~Le~~gI~vnkn~iP~d~-~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 345 ---KEAEKALEEAGIIVNKNTIPGDR-SPFVPSGLRLGTPALTRRGMKEEDMKEIAE 397 (399)
T ss_dssp ---HHHHHHHHHTTEE-EEE--TTTS-TTTT-SEEEEESHHHHHTT--HHHHHHHHH
T ss_pred ---HHHHHHHHhcCeeecccccCCCC-CCCCCCEEEECCHHHHhCCCCHHHHHHHHh
Confidence 235667789999985 4431 111245799998542 4555555443
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-14 Score=146.78 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=125.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..+..+..|+.++ .....+++||+|.++..++.+++.+||+||++..||.+..+.+... |++++.++...
T Consensus 207 I~eAq~~aA~~fg---------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~-ga~Pvyl~P~~ 276 (755)
T PRK15029 207 FGESEKYAARVFG---------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILT-GAKPVYMVPSR 276 (755)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeEEEecccc
Confidence 4566667777775 4567899999999999999999999999999999999998888876 99999887442
Q ss_pred CCCcc----cC-----HHHHHHHHHHHh----hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 166 SNGFR----IT-----ISALENAYQQAQ----TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 166 ~~~~~----~d-----~~~l~~~i~~~~----~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
+.++ ++ ++.+++++++.. ..+++++++++++| +..|.++ ++++|++.|+++++.+++||||+
T Consensus 277 -~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~---di~~I~~~~h~~~~~llvDEAhG 351 (755)
T PRK15029 277 -NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCY---NAKEAQDLLEKTSDRLHFDEAWY 351 (755)
T ss_pred -cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceee---CHHHHHHHHHhcCCeEEEECccc
Confidence 2222 23 888999886532 12345669999999 8899996 57778999999999999999997
Q ss_pred ccccCCCCCCccchhhhh-hccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEE
Q 037587 233 GTVFDSPSSSFISIMEAV-MDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIY 286 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~ 286 (464)
.. |.-.+ .++....+. ... ......++++.|.+|++ +++..|.++
T Consensus 352 ah-~~F~~-~~p~~sa~~~~~~-----~~~Gad~~vvqStHKtL--~alTQaS~L 397 (755)
T PRK15029 352 GY-ARFNP-IYADHYAMRGEPG-----DHNGPTVFATHSTHKLL--NALSQASYI 397 (755)
T ss_pred cc-cccCc-ccccccccccccc-----ccCCCceEEEEchhhcc--cchhhhhhh
Confidence 64 22110 122111110 000 00112348899999997 666666543
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-12 Score=129.49 Aligned_cols=348 Identities=13% Similarity=0.129 Sum_probs=193.1
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ......+ .-..+.+..+|+.+.+..+
T Consensus 47 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~----------~~~~~~~---~~~~~~~~~lAe~L~~~~p-- 111 (453)
T PRK06943 47 WLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDT----------LEHAMLA---GCTHEPAIELAERLAALTG-- 111 (453)
T ss_pred EEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHh----------cCCcccc---ccCCHHHHHHHHHHHHhCC--
Confidence 4444566788999765 3333 346666766664221 1111111 1123455566666654322
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc-------CC-CCeEEEcCCCCCChhhhcccCCCc------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA-------DP-GDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~-------~~-gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~ 164 (464)
..-+.+++++++++++..+++... .+ ..+|+...-+|++....+....|. .+..++..
T Consensus 112 --~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p 189 (453)
T PRK06943 112 --GTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASP 189 (453)
T ss_pred --CCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCC
Confidence 123589999999999999988752 12 367999998888754221111111 11222221
Q ss_pred CCCC--cc--------cCHHHHHHHHHHHhhcCCceEEEEEeC-CCCCCCC-CCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 165 SSNG--FR--------ITISALENAYQQAQTLNLKVKGVLITN-PSNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 165 ~~~~--~~--------~d~~~l~~~i~~~~~~~~~~~~vil~~-P~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
...+ +. -+++.+++.++. .+.++.+|++.- ...-.|. ..|.+.++++.++|++||+++|.||++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~T 266 (453)
T PRK06943 190 DARGARPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAV 266 (453)
T ss_pred CccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhh
Confidence 1000 00 123555655542 234677666653 2455666 4577889999999999999999999998
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH--------hcccC
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK--------MSSFG 303 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~--------~~~~~ 303 (464)
++ +..+ .+... +.. + ..+.++ +++|.+| .| +.+|.+++++ .+.+.+.. ....+
T Consensus 267 G~--GRtG-~~fa~-~~~-g--------v~PDiv---t~gKgl~-gG~~Pi~av~~~~-ei~~~~~~~~~~~~~~~~~T~ 328 (453)
T PRK06943 267 GC--GRTG-TFFAC-EQA-G--------VWPDFL---CLSKGIS-GGYLPLSLVLSRD-AIFAAFYDDDVTRGFLHSHSY 328 (453)
T ss_pred CC--CCCc-chhHH-HhC-C--------CCCCeE---eeehhhc-cCcccceEEEEcH-HHHHhhcccCccCCccCCCCC
Confidence 74 3221 11111 111 0 123333 6799998 89 5999999954 45544431 11122
Q ss_pred CCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHh---C-CCeeecCCccEEEEEecCcccccCChhH
Q 037587 304 LVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKV---A-GIRCLKSNAGLFCWVDMRHLLVSNTFEA 376 (464)
Q Consensus 304 ~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~ 376 (464)
..++++.+++.+.|+ +.++ .+..+ ++-+++.+.|++ . ++.-.. .-|+++-+++..... .....
T Consensus 329 ~gnpl~~aaa~a~L~~i~~~~l-~~~~~-------~~G~~l~~~L~~l~~~~~v~~vr-G~Gl~~gvel~~~~~-~~~~~ 398 (453)
T PRK06943 329 TGNPLACRAALATLDLFAEDDV-LARNA-------RKSARLRAALAPLAAHPQVRHLR-QRGTIFAFDVALDGD-AARTF 398 (453)
T ss_pred CCCHHHHHHHHHHHHHHHhcCH-HHHHH-------HHHHHHHHHHHHHhcCCCEEeEe-ccccEEEEEEccCCC-cchHH
Confidence 346666666665554 3222 12222 223333333333 2 232222 345677777752211 11111
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 377 EKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 377 ~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
...+...++ ++||++.+.. +.+|++... ++++++++++++|.+++++.
T Consensus 399 ~~~i~~~~~-~~Gll~~~~g-------~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 399 SRRFFEAAL-ERELLLRPIG-------TTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred HHHHHHHHH-HCCcEEEecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 234555554 6799997641 358998655 69999999999999999764
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-15 Score=146.34 Aligned_cols=177 Identities=20% Similarity=0.289 Sum_probs=122.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..+..+.+|+.++ .....+++||+|.++..++.+++.+||+||++..||.+...++... |+++++++..
T Consensus 68 I~eAe~~aA~~fG---------Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~-ga~Pvyi~p~- 136 (417)
T PF01276_consen 68 IKEAEELAARAFG---------ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILS-GAIPVYIPPE- 136 (417)
T ss_dssp HHHHHHHHHHHHT---------ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHH-TEEEEEEEEE-
T ss_pred HHHHHHHHHHhcC---------CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHc-CCeEEEecCC-
Confidence 4677777788776 3556889999999999999999999999999999999888888776 9999988865
Q ss_pred CCCc----ccCH-----HHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-
Q 037587 166 SNGF----RITI-----SALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV- 235 (464)
Q Consensus 166 ~~~~----~~d~-----~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~- 235 (464)
.+.+ .+++ +.+++++++.... ..++++++++| +..|.++ ++++|+++|.++++.|++||||+...
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~-k~~~~vvlt~P-TY~Gv~~---di~~I~~~~h~~~~~llvDEAhGah~~ 211 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEHPDA-KAPRLVVLTSP-TYYGVCY---DIKEIAEICHKHGIPLLVDEAHGAHFG 211 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHCTTC-HCESEEEEESS--TTSEEE----HHHHHHHHCCTECEEEEE-TT-TTGG
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhCccc-cCceEEEEeCC-CCCeEEE---CHHHHHHHhcccCCEEEEEcccccccc
Confidence 3333 3455 8888888763211 12455999999 8899996 58889999999999999999997641
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecC
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNN 289 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~ 289 (464)
|. + -+.+...+-.+ ......++++.|.+|.+ +++.- +++....
T Consensus 212 F~-~--lp~~a~~~gad------~~~~~~~~vvqS~HKtL--~altQts~lh~~~ 255 (417)
T PF01276_consen 212 FH-P--LPRSALALGAD------RPNDPGIIVVQSTHKTL--PALTQTSMLHVKG 255 (417)
T ss_dssp CS-G--GGTTCSSTTSS-------CTSBEEEEEEEHHHHS--SS-TT-EEEEEET
T ss_pred CC-C--CccchhhccCc------cccccceeeeechhhcc--cccccceEEEecC
Confidence 22 1 11122222111 11346789999999997 55554 4554433
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-13 Score=131.95 Aligned_cols=286 Identities=13% Similarity=0.070 Sum_probs=181.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcE--EEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKL--VLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i--~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v 161 (464)
..++.+.+.+++.+.++ ++++++ ++|+|+||++..++.+.. .++..|+++.-.|......++.+ |.++..+
T Consensus 64 a~~~e~~v~~~ia~llg----~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~l-g~~~~~V 138 (374)
T PLN03032 64 SRQFEVGVLDWFARLWE----LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMEAVKV 138 (374)
T ss_pred HHHHHHHHHHHHHHHhC----CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHc-CCCCeEe
Confidence 35666666666665555 567776 999999999998887653 24568888888888888888777 8888888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC-----eEEEEecccccccc
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR-----IHIVSDEIYSGTVF 236 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~-----~~lI~Deay~~~~~ 236 (464)
|+++ ++.+|+++|++.+++. ..++.+|+++..+|+||.+- .+++|.++|+++| +++.+|.+|+....
T Consensus 139 ~~d~--~g~id~~~L~~~i~~~---~~~~~lvv~tagtt~tG~id---pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~ 210 (374)
T PLN03032 139 PTLP--SGEIDYDDLERALAKN---RDKPAILNVNIGTTVKGAVD---DLDRILRILKELGYTEDRFYIHCDGALFGLMM 210 (374)
T ss_pred eeCC--CCcCcHHHHHHHHHHc---CCCCEEEEEEecCcCCccCC---CHHHHHHHHHHhCCCCCCeeEEEEccchhhhh
Confidence 8874 4579999999999752 12466777888899999994 5667788888885 58999999975422
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC-------CCCh--
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG-------LVSS-- 307 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~-------~~s~-- 307 (464)
.-. ...+...+ ......+.-|.+|.+| ....+|.++.+++.+. .+.....|. ..+.
T Consensus 211 p~~--~~~~~~~~-----------~~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~-~~~~~~~Yl~~~d~ti~gSR~g 275 (374)
T PLN03032 211 PFV--SRAPEVTF-----------RKPIGSVSVSGHKFLG-CPMPCGVALTRKKHVK-ALSQNVEYLNSRDATIMGSRNG 275 (374)
T ss_pred hcc--CCCcccCC-----------CcCCcEEEECcccccC-CCcCeEEEEEEchhhH-hhccCCcccCCCCCcccCCCch
Confidence 100 00000011 1123345679999887 4456899998665432 222211211 1111
Q ss_pred ---HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cCCccEEEEEecCcccccCChhHHHHHHHH
Q 037587 308 ---QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL-KSNAGLFCWVDMRHLLVSNTFEAEKELWKK 383 (464)
Q Consensus 308 ---~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ 383 (464)
+...+....+. .+-+.+..+..-+..+++.+.|.+.++.+. .|... .+.++-+.. ..
T Consensus 276 ~~~l~~w~~l~~~G-----~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~-~V~f~~~~~-------------~~ 336 (374)
T PLN03032 276 HAPLYLWYTLRRKG-----YRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSS-TVVFERPMD-------------EA 336 (374)
T ss_pred HHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCCce-EEEEcCCCc-------------Hh
Confidence 12222222222 233455566666777888999988887754 45543 444444410 11
Q ss_pred HHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 384 IIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
+. .|..+.+- .+++||++.. ++++.++++++.|++
T Consensus 337 ~~--~~w~l~~~-------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 337 FI--KKWQLACE-------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred Hh--heeeeccc-------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 22 35555421 3479999976 677888888887764
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=130.76 Aligned_cols=348 Identities=10% Similarity=0.063 Sum_probs=191.7
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.+..+ ....+. -..+.+..+|+.+.+..+
T Consensus 46 ~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~---~~~~~~~~la~~L~~~~~-- 107 (433)
T PRK00615 46 IFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAE-------------RGTSYG---LTSEQEILFAEELFSYLG-- 107 (433)
T ss_pred EEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHH-------------hCCCCC---CCCHHHHHHHHHHHHhCC--
Confidence 4445556778999765 3333 35777777766532 111221 113344555666554321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC-CC-CeEEEcCCCCCChhhh---cccCCCcEE----EEEecCC--CC----Cc
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD-PG-DAFLLPTPYYPGFDRD---LKWRPGVEI----VPIHCSS--SN----GF 169 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~---~~~~~g~~~----~~v~~~~--~~----~~ 169 (464)
...+.+.++++++|++..+++.... .| .+|+...-+|++.... .....+... ......+ .. .+
T Consensus 108 --~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (433)
T PRK00615 108 --LEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY 185 (433)
T ss_pred --CCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC
Confidence 2236899999999999999886431 23 5788888888875421 101101000 0000000 00 01
Q ss_pred ccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchh
Q 037587 170 RITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIM 247 (464)
Q Consensus 170 ~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~ 247 (464)
-|++.+++.+.+. +.++.+|+ ..| ..-.|... +.+.+++|.++|++||+++|+||++.++ ..+. . ...
T Consensus 186 -~d~~~l~~~l~~~---~~~~aavI-~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~--~--ga~ 255 (433)
T PRK00615 186 -NDFQIFQTVMNSL---GHRVAGVI-FEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ--G--GAA 255 (433)
T ss_pred -CCHHHHHHHHHhc---CCceEEEE-ECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH--h--HHH
Confidence 1678888877542 23555554 445 44457655 5677999999999999999999999764 1221 1 111
Q ss_pred hhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-----cCCCChHHHHHHHHHcC---C
Q 037587 248 EAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-----FGLVSSQTQYLLSRMLS---D 319 (464)
Q Consensus 248 ~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~---~ 319 (464)
+... ..+.+ .+|+|.+| .|+.+|+++++ +.+.+.+..... .+..++++.+++.+.|+ +
T Consensus 256 ~~~g---------v~PDi---~~~gK~lg-gG~p~~av~~~-~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~ 321 (433)
T PRK00615 256 AIYH---------VKPDI---TVYGKILG-GGLPAAAVVAH-KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE 321 (433)
T ss_pred HhcC---------CCCCe---EEEccccc-CCcceeeeeec-HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc
Confidence 1110 11222 25899998 78999999994 445554432111 11235566555555543 2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc-------CChhHHHHHHHHHHHhcCeEE
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS-------NTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~-------~~~~~~~~l~~~ll~~~gI~v 392 (464)
.+. .+.++++-+ ..++.|.+.+.+.|+++.....|.++.+.+...... .+......+...++ ++||++
T Consensus 322 ~~~-~~~~~~~g~---~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~ 396 (433)
T PRK00615 322 QGF-YTQLSTLEQ---NFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAF-SKGVYL 396 (433)
T ss_pred ccH-HHHHHHHHH---HHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHH-HCCeee
Confidence 222 222222222 223334555555565443323566777777532110 01122335666665 679999
Q ss_pred eCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 393 SPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 393 ~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
.|.... ..+ ++.. .++++++++++++.+++++.
T Consensus 397 ~~~~~~----~~~--ls~~-ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 397 SPSPFE----ASF--LSSA-HSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred cCcccc----ccc--eecC-CCHHHHHHHHHHHHHHHHHH
Confidence 875421 112 3444 58999999999999998864
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-13 Score=130.94 Aligned_cols=205 Identities=14% Similarity=0.178 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh----hhcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD----RDLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~~g~~~~~v~ 162 (464)
.+|.+.++++.+ .+..+++++++.||.+++.+++++||+|+++.+.|+... ..+... |++++.++
T Consensus 67 ~~lE~~la~leg----------~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~-Gi~v~fvd 135 (384)
T PRK06434 67 QAFEEKYAVLEN----------AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTL-GIHVDYID 135 (384)
T ss_pred HHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhc-CcEEEEEC
Confidence 556666666653 345788888889999999999999999999988776654 334445 99999998
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.++.+.+.++. .++++|++..|.|||+.+. ++++|.++|++++ +++|.+++.. +...
T Consensus 136 ~~~~~~~~l~~--------------~~tklv~~e~~snpt~~v~---Di~~I~~la~~~~--lvVD~t~~s~-~~~~--- 192 (384)
T PRK06434 136 TDRLNSLDFDP--------------SNYDLIYAESITNPTLKVP---DIKNVSSFCHEND--VIVDATFASP-YNQN--- 192 (384)
T ss_pred CCChhheeecC--------------CCeeEEEEEcCCCCCceee---cHHHHHHHHHHcC--eEEECCCCCc-ccCC---
Confidence 76433332221 2688999999999999874 6888888888888 4569997532 2222
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhc-ccCC-CChHHHHHHHHHcCC
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMS-SFGL-VSSQTQYLLSRMLSD 319 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~-~~~~-~s~~~q~~~~~~l~~ 319 (464)
++ .+ ...+++.|.+|.++-+| .=.|.++++++.+.+.++... .++. .+++..+.+..-|+.
T Consensus 193 --pl-~~-------------gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t 256 (384)
T PRK06434 193 --PL-DL-------------GADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT 256 (384)
T ss_pred --ch-hc-------------CCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc
Confidence 11 11 45578899999996433 446777776665655444332 3332 344433333333333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
+..+.++..+....+.+.|+.+
T Consensus 257 -------L~~R~~r~~~~a~~~a~~L~~~ 278 (384)
T PRK06434 257 -------LGLRMEKHNKNGMELARFLRDS 278 (384)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHcC
Confidence 3444445556667778888776
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-12 Score=129.34 Aligned_cols=355 Identities=13% Similarity=0.075 Sum_probs=193.5
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ......+ ..-..+.+..+|+.+.+...
T Consensus 39 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----------~~~~~~~--~~~~~~~~~~lae~L~~~~p-- 104 (459)
T PRK05965 39 TLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRE----------LPYATGY--FHFGSEPAIRLAAKLAERAP-- 104 (459)
T ss_pred EEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHh----------cCCcccc--cccCCHHHHHHHHHHHhhCC--
Confidence 4444556788998654 3333 346666666664221 1111111 01113444556666654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC-------C-CCeEEEcCCCCCChhhhcccCCCc------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD-------P-GDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~ 164 (464)
-..+.++++++++|++..+++.... + ..+|+...-+|++.........+. .+..++..
T Consensus 105 --~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~ 182 (459)
T PRK05965 105 --GSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSP 182 (459)
T ss_pred --CCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCC
Confidence 1346899999999999999886421 2 257999999998764321111011 01122211
Q ss_pred C--CCCcccCH--------HHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 165 S--SNGFRITI--------SALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 165 ~--~~~~~~d~--------~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
. ...+.-|. +.+++.+.+. ...++.+|++.-.....|.. .|.+-++++.++|++||+++|.||+..+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tG 260 (459)
T PRK05965 183 YPYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITG 260 (459)
T ss_pred cccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcc
Confidence 0 00111122 4555555431 11367666665335556764 5777899999999999999999999987
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH---------hcccC
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK---------MSSFG 303 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~---------~~~~~ 303 (464)
+.-.+. . .. .+... ..+. +-+++|.+| .| +.+|.+++++ .+.+.+.. ....+
T Consensus 261 fGRtG~--~-~a-~~~~g---------v~PD---iv~~gKgl~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~h~~T~ 322 (459)
T PRK05965 261 FGRTGP--L-FA-CEAEG---------VVPD---LMTVAKGLT-SGYVPMGAVLMSD-HVYQGIADGAGAAAPVGHGYTY 322 (459)
T ss_pred CccCch--h-hh-HhhcC---------CCCC---eEEechhhc-cCCcceeEEEEcH-HHHHHHhccccccccccccCCC
Confidence 422222 1 11 11110 1123 337899998 89 5999999954 45444321 11122
Q ss_pred CCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHh---CCCeeecCCccEEEEEecCcccccCC----
Q 037587 304 LVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKV---AGIRCLKSNAGLFCWVDMRHLLVSNT---- 373 (464)
Q Consensus 304 ~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~g~~~~~~~~g~f~~~~l~~~~~~~~---- 373 (464)
..++++.+++.+.|+ +.++ .+.. ++.-++|.+.|++ +.+......-|+++-+++........
T Consensus 323 ~gnpl~~Aaa~a~L~~l~~~~l-~~~~-------~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~ 394 (459)
T PRK05965 323 SAHPVSAAVGLEVLRLYHEGGL-LANG-------QKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDA 394 (459)
T ss_pred CCCHHHHHHHHHHHHHHHhccH-HHHH-------HHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCc
Confidence 356666666555543 3332 1222 2233333344433 22211122346777777743211110
Q ss_pred -hhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 374 -FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 374 -~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
......+...++ ++||++.+. +...+|+.... ++++++++++++|.+++++...
T Consensus 395 ~~~~~~~i~~~~~-~~Gll~~~~------g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~ 450 (459)
T PRK05965 395 ALDPADRIFDRAY-ANGLVFRAF------GDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLA 450 (459)
T ss_pred hhHHHHHHHHHHH-hCCeEEEec------CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 011223555554 679999753 24578998765 6899999999999999987643
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=119.70 Aligned_cols=285 Identities=17% Similarity=0.209 Sum_probs=195.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-CCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 108 DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPY-YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~-y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
.+.-.++...++.+++.++..++.|||.|++-..+ |+.-...+....|++|..++.+. +-..+++.+.+.+.++
T Consensus 67 n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~--G~~~~le~i~~~lsqh--- 141 (385)
T KOG2862|consen 67 NAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADI--GQAVPLEEITEKLSQH--- 141 (385)
T ss_pred CCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCc--ccCccHHHHHHHHHhc---
Confidence 34456777778899999999999999999987665 54333333334499999998764 4567899999999874
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
+++++++++-...||..-+ -+..+-++|++|+.++++|.+-+ .++. +|. . |.++..+
T Consensus 142 --~p~~vfv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaS---lggt--~F~-----m---------DewgVDv 198 (385)
T KOG2862|consen 142 --KPKAVFVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVAS---LGGT--EFE-----M---------DEWGVDV 198 (385)
T ss_pred --CCceEEEEecCccccccch--HHHHHHHHhhcCCeEEEEechhh---cCCc--cce-----e---------hhhcccE
Confidence 8999999999999999843 25566788999999999999887 5554 321 1 2456777
Q ss_pred EEcCCCcCCCCC-ccEEEEEEecCHHHHHHHHHhc--------------cc-----------CCCChHHHHHHHHHcCCc
Q 037587 267 IVYSLSKDFSMP-GFRVGMIYSNNERVVSAATKMS--------------SF-----------GLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 267 ~l~S~SK~~g~~-GlRiG~l~~~~~~~~~~~~~~~--------------~~-----------~~~s~~~q~~~~~~l~~~ 320 (464)
....--|++|.| |+ +-|..++ ...++++... .| .+++......+.++|..
T Consensus 199 aytgSQKaL~aP~GL--siisfS~-ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~- 274 (385)
T KOG2862|consen 199 AYTGSQKALGAPAGL--SIISFSD-KALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALAL- 274 (385)
T ss_pred EEecchhhcCCCCCc--ceeecCH-HHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHH-
Confidence 777888999754 64 4455544 3444443221 11 22344555566666653
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN----AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
+.++-+++..++.++..+++...|+++|++.+... -.-.-.+.+|...+.+ +++.++...++|.+--|
T Consensus 275 -I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~------dVv~~~~~~~~vei~gg- 346 (385)
T KOG2862|consen 275 -IAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWK------DVVAYAMSHYVVEIGGG- 346 (385)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHH------HHHHHHHHhcCEEeccc-
Confidence 23667888888999999999999999987644211 1112234555544332 46777776666666433
Q ss_pred CCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhC
Q 037587 397 SCHCNEPGWFRICFAN--ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 397 ~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+...+..+||.+-. .+.|.++..++.|+..+.+.+
T Consensus 347 -lg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 347 -LGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred -cCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 344456789999844 467899999999998887653
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-12 Score=132.14 Aligned_cols=353 Identities=13% Similarity=0.123 Sum_probs=191.4
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCC-CCcHHHHHHHHHHHHHHcCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDY-HGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~~~~~~~~ 103 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+ ....+... .+..+....+|+.+-+.+.
T Consensus 82 ~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~-------------~~~~~~~~~~~~~~~~~~lae~L~~~~~- 147 (504)
T PLN02760 82 YVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLN-------------KLPFYHSFWNRTTKPSLDLAKELLEMFT- 147 (504)
T ss_pred EEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHh-------------hccceecccccCcHHHHHHHHHHHhhcC-
Confidence 4444556788998774 3333 34666666666422 11111111 1234556666666654321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc------C-CC-CeEEEcCCCCCChhhhcccCCCcE------------EEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA------D-PG-DAFLLPTPYYPGFDRDLKWRPGVE------------IVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~------~-~g-d~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v~~ 163 (464)
+.+.+.+++++++++++..+++... . ++ .+|+..+-+|++.........|.. +..++.
T Consensus 148 --~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~ 225 (504)
T PLN02760 148 --ARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDC 225 (504)
T ss_pred --CCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCC
Confidence 1123578999999999999998762 1 22 578888888877543221111221 111221
Q ss_pred CCCCCccc-----C--------HHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEe
Q 037587 164 SSSNGFRI-----T--------ISALENAYQQAQTLNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSD 228 (464)
Q Consensus 164 ~~~~~~~~-----d--------~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~D 228 (464)
+ ..|.. + .+.+++.+.. ....++.+|++ -| ..-.|.+ .|.+.+++|.++|+++|+++|.|
T Consensus 226 p--~~~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~~iAAvI~-EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~D 300 (504)
T PLN02760 226 P--HYWRFHLPGETEEEFSTRLADNLENLILK--EGPETIAAFIA-EPVMGAGGVIPPPATYFEKIQAVLKKYDILFIAD 300 (504)
T ss_pred C--cccccCCCCCcHHHHHHHHHHHHHHHHHh--cCCCceEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEec
Confidence 1 11110 1 1345554432 11234655554 45 4455665 46778999999999999999999
Q ss_pred ccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh--------
Q 037587 229 EIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM-------- 299 (464)
Q Consensus 229 eay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~-------- 299 (464)
|++.+ |+..+.. .. .+. + +...-+.+|+|.+| .| +.+|.++++ +.+.+.+...
T Consensus 301 EV~TG--fGRtG~~-~a-~e~---~---------gv~PDivtlgK~lg-gG~~PigAv~~~-~~i~d~~~~~~~~~~~~~ 362 (504)
T PLN02760 301 EVICA--FGRLGTM-FG-CDK---Y---------NIKPDLVSLAKALS-SAYMPIGAVLVS-PEISDVIHSQSNKLGSFA 362 (504)
T ss_pred chhhC--Ccccchh-hH-HHh---c---------CCCCcEEEeccccc-CCccccceEeec-HHHHhhhhcccccccCcc
Confidence 99976 4322101 11 111 1 11112568999998 67 589998885 4555544321
Q ss_pred -cccCCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCC-h
Q 037587 300 -SSFGLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNT-F 374 (464)
Q Consensus 300 -~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~-~ 374 (464)
...++.++++.+++.+.|+ ..++ .++.+++-+.+++. |.+ |.+.++......-|+++-+++........ .
T Consensus 363 h~~T~~gnPl~~Aaala~Le~i~~~~l-~~~~~~~g~~l~~~---L~~-l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~ 437 (504)
T PLN02760 363 HGFTYSGHPVSCAVALEALKIYKERNI-PEHVNKIAPRFQDG---IKA-FSGSPIIGEIRGTGLILGTEFVDNKSPNDPF 437 (504)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHH---HHH-HhcCCCeeeEEeCceEEEEEEecCCcccccc
Confidence 1122356666666666554 2222 22233333322222 211 23333322122335677777743211110 0
Q ss_pred ----hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 375 ----EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 375 ----~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.....+...++ ++||++.++. ..+||+... +++++++++++++.+++++..
T Consensus 438 ~~~~~~~~~i~~~~~-~~Gvl~~~~g-------~~lrl~Ppl~it~eeid~~~~~l~~al~~~~ 493 (504)
T PLN02760 438 PAEWGVGAYFGAECK-KRGMLVRVAG-------DNIMMSPPLIITPEEVDELISIYGKALKATE 493 (504)
T ss_pred cchhHHHHHHHHHHH-hCCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11223555554 6799997631 358999765 699999999999999987764
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-12 Score=128.02 Aligned_cols=352 Identities=13% Similarity=0.075 Sum_probs=189.6
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.++++++.+ .+...+......+....+|+.+.+...
T Consensus 39 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-------------~l~~~~~~~~~~~~~~~la~~l~~~~p-- 103 (442)
T PRK13360 39 YYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAG-------------ELDYAPAFQMGHPKAFELANRIAEIAP-- 103 (442)
T ss_pred EEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHH-------------hCCCcccCCcCCHHHHHHHHHHHHhCC--
Confidence 4444556778998755 2333 34667777766532 111111111123445566666654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC-------C-CCeEEEcCCCCCChhhhcccCCCc------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD-------P-GDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~ 164 (464)
-..+.++++++++|++..+++.... + ..+|+...-+|++....+....|. .+..+|..
T Consensus 104 --~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~ 181 (442)
T PRK13360 104 --GGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHT 181 (442)
T ss_pred --CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCC
Confidence 1235899999999999999886421 2 257999998888764321111010 11222221
Q ss_pred C---CCCccc--------CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 165 S---SNGFRI--------TISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 165 ~---~~~~~~--------d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. ...|.. .++.+++.+... ...++.+|++.....-.|.. .+.+.+++|.++|+++|+++|+||++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~t 259 (442)
T PRK13360 182 LDLARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVIT 259 (442)
T ss_pred chhhccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 1 001111 134566665421 12355555544335556765 467779999999999999999999997
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH---------hccc
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK---------MSSF 302 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~---------~~~~ 302 (464)
++.-.+. .+ . .+.. + ..+. +.+|+|.+| .| +.+|.+++++ .+.+.+.. ....
T Consensus 260 G~GrtG~--~~-a-~~~~-g--------v~PD---ivt~gK~l~-gG~~P~gav~~~~-~i~~~~~~~~~~~~~~~~~~T 321 (442)
T PRK13360 260 GFGRLGA--PF-A-AQYF-G--------VTPD---LLTCAKGLT-NGAIPMGAVFVSS-EIHDAFMQGPEAGIEFFHGYT 321 (442)
T ss_pred CCCCCcc--ch-h-hhhc-C--------CCCc---eeeeeeccc-cCccceEEEEEcH-HHHHHhhcCCccccccccCCC
Confidence 6421122 11 1 1111 1 1122 338999997 67 7899988844 45444322 1111
Q ss_pred CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-Ce-ee-cCCccEEEEEecCcccccCChhHHHH
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IR-CL-KSNAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~-~~-~~~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
+..++++.+++.+.|+--. + +...+..++.-+++.+.|+++. .. +. ....|+++-+.+........ ....+
T Consensus 322 ~~g~pl~~aaa~a~L~~l~--~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~-~~~~~ 395 (442)
T PRK13360 322 YSGHPLACAAALATLDLYE--R---EGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPG-KRAYE 395 (442)
T ss_pred CCCCHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcc-hhHHH
Confidence 2345666666555554211 0 0122333334444455554331 11 11 11234555555532111111 12234
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
++..++ ++||++.++ .+.+||+... ++++++++++++|.+++++
T Consensus 396 ~~~~l~-~~Gvl~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 396 VFLKCF-EKGLMIRYT-------GDILALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred HHHHHH-HCCcEEEec-------CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 566665 679999753 2469999766 7999999999999999865
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=136.13 Aligned_cols=269 Identities=16% Similarity=0.141 Sum_probs=172.1
Q ss_pred CcEEEe-CChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEEEecCCCCCcccCHHHHHH-HHHHHhh
Q 037587 110 NKLVLT-AGSTAANETLMFCLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVPIHCSSSNGFRITISALEN-AYQQAQT 185 (464)
Q Consensus 110 ~~i~it-~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-~i~~~~~ 185 (464)
.+|+++ ++++.+++.++..++.+|+++++...+..+. ...++.. |.. ..+..++..++ .+..++++ .+++
T Consensus 67 ~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~-g~~-~~~~~~~~~g~-~~~~~~~~~~l~~--- 140 (360)
T PRK05355 67 YKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKY-GEV-NVAASSEDDGF-TYIPPLDEWQLSD--- 140 (360)
T ss_pred cEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CCc-eEEecccccCC-CCCCChhhccCCC---
Confidence 345554 7788889999999999999988887665432 2334444 754 44544321233 23333333 4432
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
++++|.+++-.|.||...+ ++.++ +|+++|+|.+.+ ++.. + .++.. .+
T Consensus 141 ---~~~~V~~th~eTstGv~~~--~i~~i------~g~l~vVDavss---~g~~--~-idv~~-------------~d-- 188 (360)
T PRK05355 141 ---DAAYVHYTSNETIDGTEFH--ELPDT------GDVPLVADMSSD---ILSR--P-IDVSK-------------FG-- 188 (360)
T ss_pred ---CCCEEEEccCCCcceEecC--ccccc------CCCcEEEEcCcc---ccCc--c-CCHHH-------------cc--
Confidence 6889999999999999984 34444 799999999997 4433 1 22211 13
Q ss_pred EEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--------------hcccCCCChHHHHHHHHHcCCchhhHH-HHHHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--------------MSSFGLVSSQTQYLLSRMLSDKKFTCN-YMKEN 330 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--------------~~~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~ 330 (464)
+++.|..|.+|.+| +|+++.+++.+.+ +.. ...+++++.....++.++|+.-. +. -++..
T Consensus 189 ~~~~ssqK~lgP~G--lg~l~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~--~~gG~e~i 263 (360)
T PRK05355 189 LIYAGAQKNIGPAG--LTIVIVREDLLGR-ALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLK--EQGGVAAM 263 (360)
T ss_pred EEEEeccccccCCc--eEEEEECHHHHhh-cccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHH--HccCHHHH
Confidence 77889999999777 6888885554432 211 11234445555555555554321 22 26677
Q ss_pred HHHHHHHHHHHHHHHHhCCCe-eecC---CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 037587 331 RKRLRKRKEMLVSGLKVAGIR-CLKS---NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWF 406 (464)
Q Consensus 331 ~~~~~~~~~~l~~~l~~~g~~-~~~~---~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 406 (464)
.++.++..+++.+.|+++++. ...+ ..+..+.+.++.. ....++...+ .++|+.+.+|.. ..+.+
T Consensus 264 ~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~~-~~~Gi~~~~~~~----~~g~v 332 (360)
T PRK05355 264 EKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE------ELDKKFLAEA-KAAGLVGLKGHR----SVGGM 332 (360)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh------HHHHHHHHHH-HHCCCcccCCCC----ccCcE
Confidence 788888889999999998742 2111 2333455566542 1112344444 467999866653 24689
Q ss_pred EEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 407 RICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 407 Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
|+|+.. .+.++++.+++.|+++++++
T Consensus 333 RiS~~~~nt~eei~~l~~~l~~~~~~~ 359 (360)
T PRK05355 333 RASIYNAMPLEGVQALVDFMKEFERRH 359 (360)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999977 78999999999999988765
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-12 Score=130.63 Aligned_cols=335 Identities=13% Similarity=0.038 Sum_probs=188.2
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.....+||+..+ ...+ ..|.+.+++.+..+. ...+. ...+....+|+.+.+..
T Consensus 68 ~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~-------------~~~~~---~~~~~~~~lAe~l~~~~--- 128 (453)
T PRK07046 68 RFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARR-------------GLTTM---LPSEDAAWVGEELARRF--- 128 (453)
T ss_pred EEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHh-------------CCCCC---CCCHHHHHHHHHHHHHh---
Confidence 4444556778998655 3333 346677777664221 11111 12345555666665432
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcc--cCC----------Cc------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLK--WRP----------GV------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~--~~~----------g~------~~~~v~~~ 164 (464)
..+.+.++++++|+...+++... ...++|+...-+|++...... ... |. .+..++
T Consensus 129 ---~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 203 (453)
T PRK07046 129 ---GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE-- 203 (453)
T ss_pred ---CCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC--
Confidence 24689999999999999988642 234678888888887632111 000 11 011111
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
| -|++.+++.+.. .++.+|++ .| ..-.|.+ .+.+.++++.++|+++|+++|.||+.. +..+-. .
T Consensus 204 ----~-nd~~~l~~~l~~-----~~vAavi~-EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~G--g 269 (453)
T PRK07046 204 ----F-NDLAALEAALAD-----GDVAAVLA-EPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPG--G 269 (453)
T ss_pred ----C-CCHHHHHHHhCC-----CCeEEEEE-CCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCc--c
Confidence 2 167888887731 35655555 56 3334544 455789999999999999999999986 322211 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-----------cccCCCChHHHH
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-----------SSFGLVSSQTQY 311 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-----------~~~~~~s~~~q~ 311 (464)
......+. +. +-+|+|.+| .|+.+|.++++ +.+.+.+... ...+..++++.+
T Consensus 270 ~~~~~gv~------------PD---i~t~gK~lg-gG~Pi~av~g~-~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~a 332 (453)
T PRK07046 270 YTRAHGLE------------PD---FLVVGKPIA-GGVPCAVYGFS-AELAERAQAAKASAPPGHSGIGTTLSANALAMA 332 (453)
T ss_pred hhHHhCCC------------cc---ceeehhhhc-CCCcceeeeeh-HHHHHHHhhccccCCCCCceeCCCCcccHHHHH
Confidence 11111121 22 337999998 89999999984 4455544321 111234666666
Q ss_pred HHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cCCccEEEEEecCcc-ccc------C-ChhHHHH
Q 037587 312 LLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL-KSNAGLFCWVDMRHL-LVS------N-TFEAEKE 379 (464)
Q Consensus 312 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~f~~~~l~~~-~~~------~-~~~~~~~ 379 (464)
++.+.|+ ..+. .+..+++-+ ..++.|.+.+.+.++.+. ...+. .+.+.+... ... . +......
T Consensus 333 a~~a~L~~l~~~~~-~~~~~~~g~---~l~~~L~~l~~~~~~~~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 407 (453)
T PRK07046 333 AMRATLAEVMTEAA-YAHMLALAA---RLAAGLRAVIARHGLPWHVTRVGA-RVEFQFAPTPPRNGAEAAAALDPELEAA 407 (453)
T ss_pred HHHHHHHHHhcccH-HHHHHHHHH---HHHHHHHHHHHhCCCCeEEEEeCc-EEEEEEeCCCCCCHHHHhcccCHHHHHH
Confidence 6555544 3332 222333333 333334444455565432 22333 344443211 100 0 1111223
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
++..++ ++||++.|. .+.++++.. +++++++.+++++.+++++.
T Consensus 408 ~~~~~~-~~Gv~~~~~-------~~~~~~~p~-~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 408 LHLYLL-NRGVLITPF-------HNMMLVCPA-TTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred HHHHHH-HCCCEEecc-------cCcEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 555555 579999763 134788876 69999999999999998753
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-12 Score=129.21 Aligned_cols=348 Identities=14% Similarity=0.088 Sum_probs=188.8
Q ss_pred CCCCCCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+- +.+ ..|.+.+++.++.+. ...+. -..+....+|+.+.+...
T Consensus 45 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~-------------~~~~~---~~~~~~~~la~~l~~~~p- 107 (428)
T PRK12389 45 AYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAEN-------------GVLYG---TPTELEIEFAKMLKEAIP- 107 (428)
T ss_pred CEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh-------------CCccC---CCCHHHHHHHHHHHHhCC-
Confidence 355555667889987652 233 346677777664221 11111 113445666666654321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcEEE--------EEecCC-CCCc---
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVEIV--------PIHCSS-SNGF--- 169 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~--------~v~~~~-~~~~--- 169 (464)
..+.++++++++|++..+++... ....+|+...-+|++....+....|.... .++... .+-.
T Consensus 108 ----~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (428)
T PRK12389 108 ----SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVP 183 (428)
T ss_pred ----CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcC
Confidence 24689999999999999988642 22367888888888764332211121110 000000 0000
Q ss_pred ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhh
Q 037587 170 RITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248 (464)
Q Consensus 170 ~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~ 248 (464)
..|++.+++.+.+. +.++.+|++.-...-.|.+. +.+.++++.++|+++|+++|.||++.++.. .. ....+
T Consensus 184 ~~d~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt-~~----~~a~~ 255 (428)
T PRK12389 184 FNDIEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRF-MY----GGAQD 255 (428)
T ss_pred CCCHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccccc-Cc----chhhH
Confidence 11678888877542 23566555543355567655 577899999999999999999999987411 11 11111
Q ss_pred hhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-----hcccCCCChHHHHHHHHHcC---Cc
Q 037587 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-----MSSFGLVSSQTQYLLSRMLS---DK 320 (464)
Q Consensus 249 l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~---~~ 320 (464)
... ..+. +-+|+|.+| .|+.+|.+++ ++.+.+.+.. ....+..++++.+++.+.|+ +.
T Consensus 256 ~~g---------v~PD---ivt~gK~lg-gG~Pi~av~~-~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~ 321 (428)
T PRK12389 256 LLG---------VEPD---LTALGKIIG-GGLPIGAYGG-RKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE 321 (428)
T ss_pred HhC---------CCCC---eeeechhhc-CCCceeEEeE-HHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc
Confidence 110 1122 348999998 8999999988 4455554431 11112356666666555554 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCccEEEEEecCccccc-------CChhHHHHHHHHHHHhcCeEE
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-SNAGLFCWVDMRHLLVS-------NTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~f~~~~l~~~~~~-------~~~~~~~~l~~~ll~~~gI~v 392 (464)
+. .+..+++-+.+++ .|.+..+++++.+.. ...|++ -+.+...... .+......+...++ ++||++
T Consensus 322 ~l-~~~~~~~g~~l~~---~L~~l~~~~~~~~~v~r~~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~ 395 (428)
T PRK12389 322 GV-YEKLDRLGAMLEE---GILEAAEKHGITITINRLKGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLML-NQGINL 395 (428)
T ss_pred cH-HHHHHHHHHHHHH---HHHHHHHhCCCCEEEEecCcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHH-HCCcEe
Confidence 22 2222222222222 222222334432221 233443 3444321100 01111234555554 679999
Q ss_pred eCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 393 SPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 393 ~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
.+.. .+.+.+++. +++++++++++++++++++
T Consensus 396 ~~~~------~~~~~~~l~-~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 396 APSK------YEAWFLTTA-HTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred ecCC------CCCeeecCC-CCHHHHHHHHHHHHHHHHh
Confidence 8752 112455554 5899999999999999864
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=135.58 Aligned_cols=286 Identities=11% Similarity=0.029 Sum_probs=176.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCC-CCCcEEEeC-ChHHHHHHHHHHhcCC-CCeEEEcCCCCCChhhh-c-ccCCCc-EEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKF-DPNKLVLTA-GSTAANETLMFCLADP-GDAFLLPTPYYPGFDRD-L-KWRPGV-EIV 159 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~-~~~~i~it~-G~~~al~~~~~~l~~~-gd~Vlv~~p~y~~~~~~-~-~~~~g~-~~~ 159 (464)
..+.|+.++++++ + ++++|+++. ++|++++.++..++++ ++.|++ .-.|+.-... + +.. |+ ++.
T Consensus 50 ~~~~r~~l~~l~~--------~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~-g~~~v~ 119 (378)
T PRK03080 50 LKRVIEGTRELLS--------LPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSKWATDVVKQL-KLEDPR 119 (378)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhc-CCCCce
Confidence 3566666777665 4 345788875 8999999999999874 444444 3344432221 2 334 88 888
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 160 PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 160 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
.++.+. +..+|+++++ .++.|.+++.+|.||..+| +++|++ +++|+++|+|.+.+ ++..
T Consensus 120 ~~~~~~--g~~~d~~~i~-----------~~~~V~~~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs---~G~~ 178 (378)
T PRK03080 120 VLEADY--GSLPDLSAVD-----------FDRDVVFTWNGTTTGVRVP---VARWIG--ADREGLTICDATSA---AFAL 178 (378)
T ss_pred EeccCC--CCCCCHhhcC-----------CCCCEEEEecCCccceecc---chhhcc--ccCCCeEEEecccc---cccC
Confidence 887652 3356666532 2356888999999999987 445555 67899999999987 4433
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCC-CccEEEEEEecCHHHHHHHHHhc------------------
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM-PGFRVGMIYSNNERVVSAATKMS------------------ 300 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~-~GlRiG~l~~~~~~~~~~~~~~~------------------ 300 (464)
+ .++. +..+++.|..|+++. +| +|+++.+++.+.+ +....
T Consensus 179 --p-idv~---------------~iD~~~~s~~K~l~~P~G--~g~l~v~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~ 237 (378)
T PRK03080 179 --P-LDWS---------------KLDVYTFSWQKVLGGEGG--HGMAILSPRAVER-LESYTPARPIPKFFRLTKGGKAI 237 (378)
T ss_pred --C-CCHH---------------HCcEEEEehhhhCCCCCc--eEEEEECHHHHHh-hhcccCCCCCchhheeccchHHh
Confidence 1 2221 124778999999853 55 7998886544332 22100
Q ss_pred -------ccCCCChHHHHHHHHHcCCchhhHH--HHHHHHHHHHHHHHHHHHHHHhCC-CeeecC----CccEEEEEecC
Q 037587 301 -------SFGLVSSQTQYLLSRMLSDKKFTCN--YMKENRKRLRKRKEMLVSGLKVAG-IRCLKS----NAGLFCWVDMR 366 (464)
Q Consensus 301 -------~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~----~~g~f~~~~l~ 366 (464)
.+++.+.....++.++++. +.+ -++...++.++..+++.+.|++.+ +.+..+ .++..+.+.++
T Consensus 238 ~~~~~~~t~~tp~i~~i~~l~~al~~---l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~ 314 (378)
T PRK03080 238 ENSFKGQTINTPSMLTVEDYLDQLDW---ANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFV 314 (378)
T ss_pred hhhhcCCcccCchHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcC
Confidence 0111222222222333321 122 246666777778888888888875 455421 23234555555
Q ss_pred cccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 367 HLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 367 ~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.. . .. ...++...+++ +||.++.|... . ..+.+|+|+.. .++++++.++++|++++++.+
T Consensus 315 ~~-~-~~--~~~~~~~~l~~-~~i~v~~g~~~-~-~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 315 DA-Q-AA--VDAAAVAKLLR-ENGAVDIEPYR-D-APNGLRIWCGPTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred Cc-h-HH--HHHHHHHHHHH-cCCeecccccc-C-CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 30 0 00 11235566654 58888876432 1 35789999987 789999999999999888765
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-11 Score=125.97 Aligned_cols=363 Identities=15% Similarity=0.126 Sum_probs=195.8
Q ss_pred cCCCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHc
Q 037587 26 NNPYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIR 101 (464)
Q Consensus 26 ~~~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~ 101 (464)
+..|..+.+...+||+..+ ...+ ..|.+.+++.++... . ...+.. .-..+.+..+|+.+.+..
T Consensus 21 ~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~----------~--~~~~~~-~~~~~~~~~lae~L~~~~ 87 (447)
T PRK06917 21 KGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEE----------V--SFVYRS-QFTSEPAEKLAKKLSDLS 87 (447)
T ss_pred eeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhh----------C--cCcccc-ccCCHHHHHHHHHHHHhC
Confidence 3345555566788998765 3333 357777777665321 0 001110 011355556666665432
Q ss_pred CCCCCCCCCcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCCCChhhhcccCCCc------------EEEEE
Q 037587 102 GNKVKFDPNKLVLTAGSTAANETLMFCLA-------DPG-DAFLLPTPYYPGFDRDLKWRPGV------------EIVPI 161 (464)
Q Consensus 102 ~~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v 161 (464)
. -..+.++++++++|++..+++... .+| .+|+...-+|++....+....+. .+..+
T Consensus 88 p----~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~ 163 (447)
T PRK06917 88 P----GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTI 163 (447)
T ss_pred C----CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEe
Confidence 1 123579999999999999988752 123 67998888888765332111111 01111
Q ss_pred ecCCCC--Cccc--------CHHHHHHHHHHHhhcCCceEEEEEeCC-C-CCCCC-CCCHHHHHHHHHHHhhCCeEEEEe
Q 037587 162 HCSSSN--GFRI--------TISALENAYQQAQTLNLKVKGVLITNP-S-NPLGT-AMTHQELNHLINFSKSKRIHIVSD 228 (464)
Q Consensus 162 ~~~~~~--~~~~--------d~~~l~~~i~~~~~~~~~~~~vil~~P-~-NPtG~-~~s~~~l~~i~~~~~~~~~~lI~D 228 (464)
+..... .+.- +++.+++.++.. ...++.+|++. | . +--|. ..|.+.++++.++|+++|+++|.|
T Consensus 164 ~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~iAAvi~E-Pi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~D 240 (447)
T PRK06917 164 SAPYCYRCPVQKVYPTCQLACATELETAIERI--GAEHIAAFIAE-PIIGAAGAAVVPPKGYYKVIKEICDHYDILFIAD 240 (447)
T ss_pred CCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEe-ccccCcCceecCCHHHHHHHHHHHHHcCCEEEEe
Confidence 111000 0000 234555555421 11356666554 5 3 33445 456888999999999999999999
Q ss_pred ccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc-EEEEEEecCHHHHHHHHHhc------c
Q 037587 229 EIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF-RVGMIYSNNERVVSAATKMS------S 301 (464)
Q Consensus 229 eay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl-RiG~l~~~~~~~~~~~~~~~------~ 301 (464)
|++.+ |+..+..+ . .+.. + ..+. +-+|+|.+| .|+ .+|.++++ +.+.+.+.... .
T Consensus 241 Ev~tG--fGRtG~~~-a-~~~~-g--------v~PD---i~~~gK~l~-~G~~Pi~a~~~~-~~i~~~~~~~~~~~~~~~ 302 (447)
T PRK06917 241 EVMTG--LGRTGAMF-A-MEHW-G--------VEPD---IMTLGKGLG-AGYTPIAATVVS-DRVMEPILRGSRSIMSGH 302 (447)
T ss_pred chhhC--cCcccchh-h-HHhc-C--------CCCC---EEEeeehhc-cCCcceEEEEEc-HHHHHHHhccCccccccc
Confidence 99986 43221011 1 1111 1 1122 347899998 885 89999985 44555443211 1
Q ss_pred cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCccEEEEEecCccccc-CC---
Q 037587 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV----AGIRCLKSNAGLFCWVDMRHLLVS-NT--- 373 (464)
Q Consensus 302 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~~~~~g~f~~~~l~~~~~~-~~--- 373 (464)
.+..++++.+++.+.|+--+- . ...+.+++.-++|.+.|++ +++......-|+++.+++...... ..
T Consensus 303 T~~gnpl~~aaa~a~l~~l~~-~----~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~ 377 (447)
T PRK06917 303 TLSANPLSAATALAVLEYMEK-H----NLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSK 377 (447)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-C----CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcc
Confidence 123566666666665542110 1 1122222233333333333 343222223456777777321110 00
Q ss_pred -hhHHHHHHHHHHHhcCeEEeCCCC-CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 374 -FEAEKELWKKIIFEVGLNISPGSS-CHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 374 -~~~~~~l~~~ll~~~gI~v~pg~~-f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
......+...++ ++||++.|+.. ......+.+|++... +++++++.++++|.+++++.
T Consensus 378 ~~~~~~~~~~~~~-~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 378 SQAVASELISVAA-KNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred hhHHHHHHHHHHH-hCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 011234555554 67999987521 111123579998775 69999999999999998765
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-12 Score=142.64 Aligned_cols=359 Identities=9% Similarity=-0.003 Sum_probs=198.1
Q ss_pred CCCCCCCCceEEeeccccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC
Q 037587 29 YDQLHNPSGIIQMGLAENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK 106 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~ 106 (464)
|..+.....+||+..+...+. .|.+.+++.++... +.....|. .+....+|+.+.....
T Consensus 617 ~l~D~dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~----------l~~~~~~~-----~~~~~~lAe~L~~~~p---- 677 (1013)
T PRK06148 617 WLIDNRGRAYLDCFNNVCHVGHAHPRVVAAAARQAAR----------LNTNTRYL-----HDAIVAYAERLTATLP---- 677 (1013)
T ss_pred EEEECCCCEEEEcccChhhcCCCCHHHHHHHHHHHhh----------cCCcCCcC-----CHHHHHHHHHHHHhCC----
Confidence 444455677899987655554 47777777765321 11111222 3444555665544321
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc------------EEEEEecC--CCCCcc
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS--SSNGFR 170 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~--~~~~~~ 170 (464)
-..+.+.++++++||+..+++... ....+|+...-+|++....+....+. .+..++.. ....|.
T Consensus 678 ~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 757 (1013)
T PRK06148 678 DGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPER 757 (1013)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCC
Confidence 123678999999999999988742 23467888888887764322111010 11111110 001121
Q ss_pred c-C-------HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 171 I-T-------ISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 171 ~-d-------~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
. + .+.+++.++.....+.++.+||+--...-.|. ..|.+.++++.++|+++|+++|.||+..++ +..+.
T Consensus 758 ~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGf--GRtG~ 835 (1013)
T PRK06148 758 WPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGF--GRVGS 835 (1013)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCC--CCCCC
Confidence 1 1 13455555432223345666555422333344 557788999999999999999999999874 32210
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh---cccCCCChHHHHHHHHHcC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM---SSFGLVSSQTQYLLSRMLS 318 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~---~~~~~~s~~~q~~~~~~l~ 318 (464)
.+.....+ +.+--+-+++|.+| .|+.+|.++++ +.+.+.+..- ...+..++++.+++.+.|+
T Consensus 836 ~~~a~e~~-------------gv~PDivt~gK~lg-gG~Plgav~~~-~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~ 900 (1013)
T PRK06148 836 HWWAFETQ-------------GVVPDIVTMGKPIG-NGHPMGAVVTT-REIADSFDNGMEYFNTFGGNPVSCAIGLAVLD 900 (1013)
T ss_pred cchhhhhc-------------CCCcceeeeccccc-CCcceEEEEEc-HHHHhhccCCCccccCCCCCHHHHHHHHHHHH
Confidence 11111111 11222458899998 89999999994 5555544321 1122356676666665544
Q ss_pred ---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEEe
Q 037587 319 ---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNIS 393 (464)
Q Consensus 319 ---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v~ 393 (464)
+.+. .+...++-+.+++. |.+..+++++....-.-|+++-+++...... ........++..++ ++||++.
T Consensus 901 ~i~~e~l-~~~~~~~G~~l~~~---L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~ 975 (1013)
T PRK06148 901 IIEDEDL-QRNALEIGNYLLAG---LRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGAR-ERGILIG 975 (1013)
T ss_pred HHhhccH-HHHHHHHHHHHHHH---HHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHH-hCCeEEe
Confidence 3332 22233333333332 2222223333222223467888887532111 11122234555655 6799998
Q ss_pred CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 394 PGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 394 pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+...+ .+.+||.... +++++++.++++|.+++.+.
T Consensus 976 ~~g~~----~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 976 TEGPH----DNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred ccCCC----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 65322 4679998876 79999999999999998753
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-12 Score=129.16 Aligned_cols=355 Identities=13% Similarity=0.098 Sum_probs=192.7
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+ ....+... -..+.+..+|+.+.+...
T Consensus 46 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-------------~~~~~~~~-~~~~~~~~lae~L~~~~p-- 109 (451)
T PRK06062 46 YVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAA-------------RLCTVAPA-HANDARSEAARLIAERAP-- 109 (451)
T ss_pred EEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHH-------------hcCCcCCc-cCCHHHHHHHHHHHHhCC--
Confidence 4555567788998765 3333 34666666666422 11111111 124555666666654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc-----------EEEEEecCC--CCCc
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV-----------EIVPIHCSS--SNGF 169 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~-----------~~~~v~~~~--~~~~ 169 (464)
-..+.|+++++++|++..+++... ....+|+...-+|++....+....+. .+..++.+. ...|
T Consensus 110 --~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 187 (451)
T PRK06062 110 --GDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEF 187 (451)
T ss_pred --CCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCcccccc
Confidence 124689999999999999988642 23367888888887764332211111 011221110 0011
Q ss_pred c--cC-------HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 170 R--IT-------ISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 170 ~--~d-------~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
. -+ ++.+++.++. ....++.+|++.--..-.|.. .|.+.++++.++|+++|+++|.||++.+ |+..
T Consensus 188 ~~~~~~~~~~~~~~~le~~l~~--~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tG--fGRt 263 (451)
T PRK06062 188 HATTEEEECERALAHLERVIEL--EGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAG--FGRT 263 (451)
T ss_pred CCCChHHHHHHHHHHHHHHHHh--cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccC--CCcC
Confidence 0 11 4556666542 112356665554324445665 4677899999999999999999999987 4322
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc-EEEEEEecCHHHHHHHHHh----cccCCCChHHHHHHH
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF-RVGMIYSNNERVVSAATKM----SSFGLVSSQTQYLLS 314 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl-RiG~l~~~~~~~~~~~~~~----~~~~~~s~~~q~~~~ 314 (464)
+ .... .+.. + ..+. +.+|+|.+| .|+ .+|.+++.+ .+.+.+... ...++.++++.+++.
T Consensus 264 G-~~~a-~~~~-g--------v~PD---i~t~gK~lg-gG~~Pigav~~~~-~i~~~~~~~~~~~~~T~~gnpl~~Aaa~ 327 (451)
T PRK06062 264 G-KWFA-IEHF-G--------VVPD---LITFAKGVN-SGYVPLGGVAISE-AIAATFADRPYPGGLTYSGHPLACAAAV 327 (451)
T ss_pred c-HHHH-HHhc-C--------CCCC---eeeechhhh-cCCcCcEEEEEcH-HHHHHhccCCCCCCCCCCCCHHHHHHHH
Confidence 1 1111 1111 0 1122 448999998 784 899999854 555554321 112234566666666
Q ss_pred HHcCC---chhhHHHHHHHH-HHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccC----C----hhHHHHHHH
Q 037587 315 RMLSD---KKFTCNYMKENR-KRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN----T----FEAEKELWK 382 (464)
Q Consensus 315 ~~l~~---~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~----~----~~~~~~l~~ 382 (464)
+.|+- .++ .++.+++- +.++ +.|.+...+++.......-|+++-+++....... . ......+..
T Consensus 328 a~L~~l~~~~l-~~~~~~~G~~~l~---~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (451)
T PRK06062 328 ATINAMEEEGI-VENAARIGAEVLG---PGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKA 403 (451)
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHH---HHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHH
Confidence 55542 222 12222221 1222 2222222223321111233567777764211000 0 011234555
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 383 KIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.++ ++||++.+. .+.+|++... +++++++++++++.+++++.+
T Consensus 404 ~l~-~~Gvl~~~~-------~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 404 ACK-ERGLLPFVN-------GNRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred HHH-HCCcEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 554 679998642 2469998865 799999999999999997654
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=125.84 Aligned_cols=360 Identities=12% Similarity=0.050 Sum_probs=191.9
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+ ..|.+.+++.++.+. ......+. ....+.+..+|+.+.+..+
T Consensus 34 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~----------~~~~~~~~--~~~~~~~~~lae~L~~~~~- 100 (449)
T PRK07481 34 VYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDE----------LEYYSTFD--GTTHPRAIELSYELIDMFA- 100 (449)
T ss_pred cEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHh----------ccceeccc--ccCCHHHHHHHHHHHHhcC-
Confidence 35555566778998654 3334 346666776664221 11111110 1123555666666654321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCCc------------EEEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~ 163 (464)
+-..+.++++++++|++..+++.... +| .+|+...-+|++....+....+- .+..++.
T Consensus 101 --~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~ 178 (449)
T PRK07481 101 --PEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVET 178 (449)
T ss_pred --CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCC
Confidence 01235899999999999999886421 23 57888888888754321111111 1122221
Q ss_pred CC--CCCcc-cCHHHHHHHHH----HHh--hcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 164 SS--SNGFR-ITISALENAYQ----QAQ--TLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 164 ~~--~~~~~-~d~~~l~~~i~----~~~--~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
+. ...|. -|++.+++.+. +.. ....++.+|++.-...-.|.. .+.+.++++.++|+++|+++|.||+..+
T Consensus 179 ~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tG 258 (449)
T PRK07481 179 PWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTG 258 (449)
T ss_pred CcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhC
Confidence 10 00121 13444433321 111 112456665554334445664 5677799999999999999999999987
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh---------cccC
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM---------SSFG 303 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~---------~~~~ 303 (464)
+.-.+. .+ . .+.. + ..+. +-+++|.+| .| +.+|.+++++ .+.+.+... ...+
T Consensus 259 fGRtG~--~~-a-~~~~-g--------v~PD---iv~~gKgl~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~h~~T~ 320 (449)
T PRK07481 259 FGRTGS--WF-G-SRGW-G--------VKPD---IMCLAKGIT-SGYVPLGATMVNA-RIADAFEANADFGGAIMHGYTY 320 (449)
T ss_pred cCcCch--hh-H-hhhc-C--------CCCC---EEEEeeccc-CCCcCceEEEEcH-HHHHHHhccCccccccccCCCC
Confidence 422221 11 1 1111 0 1123 337799998 78 5999999854 455544321 1112
Q ss_pred CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCccEEEEEecCcccccC---C--h
Q 037587 304 LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV----AGIRCLKSNAGLFCWVDMRHLLVSN---T--F 374 (464)
Q Consensus 304 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~~~~~g~f~~~~l~~~~~~~---~--~ 374 (464)
..++++.+++.+.|+--+- .+..+ ..++.-+++.+.|++ +++....-.-|+++.+++....... + .
T Consensus 321 ~gnpl~~aaa~a~L~~l~~-~~l~~----~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~ 395 (449)
T PRK07481 321 SGHPVACAAALATLDIVVR-EDLPA----NAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSK 395 (449)
T ss_pred CCCHHHHHHHHHHHHHHHh-hhHHH----HHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchh
Confidence 3466666666665542110 11122 222223333333333 3332222234577778774321100 0 1
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.....+...++ ++||++.+.. ..+||+... ++++++++++++|.+++++..
T Consensus 396 ~~~~~~~~~~~-~~Gvl~~~~g-------~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 396 GYANAVADVAR-ENGVLVRPSG-------TKIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred HHHHHHHHHHH-hCCeEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 11224555554 6799998642 248888765 699999999999999997654
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=128.47 Aligned_cols=324 Identities=14% Similarity=0.117 Sum_probs=187.8
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+. ...+.+. -..+.+..+++.+.+..
T Consensus 17 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~-------------~~~~~~~-~~~~~~~~la~~l~~~~--- 79 (364)
T PRK04013 17 YVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEK-------------LVVAGPM-FEHEEKEEMLEELSKWV--- 79 (364)
T ss_pred EEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHh-------------cCCccCC-cCCHHHHHHHHHHHhhc---
Confidence 4444556678998664 2333 345566666664221 1111111 11344455555554332
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc-CCC-CeEEEcCCCCCChhhhcccCCC-------cE-----EEEEecCCCCCcc
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA-DPG-DAFLLPTPYYPGFDRDLKWRPG-------VE-----IVPIHCSSSNGFR 170 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~~~~g-------~~-----~~~v~~~~~~~~~ 170 (464)
..+.+++++++++++..+++... .+| ++|+...-+|++....+....+ .. +..+| |
T Consensus 80 ---~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~------~- 149 (364)
T PRK04013 80 ---NYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIP------F- 149 (364)
T ss_pred ---CCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEec------C-
Confidence 23589999999999999998753 245 7899999998876433222111 11 11122 1
Q ss_pred cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhh
Q 037587 171 ITISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEA 249 (464)
Q Consensus 171 ~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l 249 (464)
.|++.+++.+.+ ++++|++.......|.. .+.+.++++.++|+++|+++|.||++.++ -.+. +.... .
T Consensus 150 ~d~~~l~~~i~~------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~---~~a~~-~ 218 (364)
T PRK04013 150 NDVEAAKEAITK------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK---FLAIE-H 218 (364)
T ss_pred CCHHHHHHHhcC------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc---hhHHH-h
Confidence 156777777643 77777666445545554 46678999999999999999999999874 2222 11111 1
Q ss_pred hhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHH
Q 037587 250 VMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKE 329 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 329 (464)
.. ..+. +-+++|.+| .|+.+|.++.+.+ +.. . .....+..++++.+++.+.|+--+- ++.+++
T Consensus 219 ~g---------v~PD---iv~~gK~lg-gG~P~~a~~~~~~-~~~-~-~~~~T~~gnp~~~aaa~a~l~~i~~-~~l~~~ 281 (364)
T PRK04013 219 YK---------VEPD---IVTMGKGIG-NGVPVSLTLTNFD-VER-G-KHGSTFGGNPLACKAVAVTLRILRR-ERLVEK 281 (364)
T ss_pred cC---------CCCC---EEEeccccc-CCceeEEEEeccc-ccC-C-CcCCCCCcCHHHHHHHHHHHHHHHh-ccHHHH
Confidence 11 1123 337799998 7999999988544 211 1 1112223566666666655542110 111222
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 037587 330 NRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC 409 (464)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris 409 (464)
.++. + +.+..--+.-.. .-|+++-+++... ...+...++ ++|+++.+. +.+.+|+.
T Consensus 282 ~~~~-------l-~~l~~~~v~~vR-G~Gl~~gve~~~~--------~~~i~~~~~-~~Gll~~~~------g~~vlr~~ 337 (364)
T PRK04013 282 AGEK-------F-IEIKGERVVTTR-GRGLMIGIVLKKP--------VGKYVEELQ-NRGYLVHTA------GQRVIRLL 337 (364)
T ss_pred HHHH-------H-HHhccCcceeee-eCcEEEEEEeCCc--------HHHHHHHHH-hCCcEEeeC------CCCEEEEe
Confidence 2221 1 122211111122 3367888888531 123555554 679999753 23679999
Q ss_pred eec-CCHHHHHHHHHHHHHHHHh
Q 037587 410 FAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 410 ~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
... ++++++++++++|.+++.+
T Consensus 338 Ppl~it~~~i~~~~~~l~~~l~~ 360 (364)
T PRK04013 338 PPLIISKDTMEEAKSAIEGVIND 360 (364)
T ss_pred CCcccCHHHHHHHHHHHHHHHHH
Confidence 877 7999999999999999865
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-12 Score=126.59 Aligned_cols=360 Identities=13% Similarity=0.117 Sum_probs=193.3
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.....+||+..+ .+.+ ..|.+.+++.++.+. ...+....-..+....+|+.+.+...
T Consensus 22 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~-------------~~~~~~~~~~~~~~~~lae~L~~~~p- 87 (443)
T PRK07483 22 IYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDR-------------LAYAHTSFFTTEPAEALADRLVAAAP- 87 (443)
T ss_pred EEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHh-------------ccCccccccCCHHHHHHHHHHHHhCC-
Confidence 34455566788999765 3334 346677777665321 11011100123455566666654321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCCc------------EEEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~ 163 (464)
-..+.++++++++|++..+++.... +| .+|+...-+|++....+....|- .+..++.
T Consensus 88 ---~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~ 164 (443)
T PRK07483 88 ---AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSP 164 (443)
T ss_pred ---CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCC
Confidence 1236899999999999999886421 23 46888888887764322111111 1112221
Q ss_pred CCCCCccc-----C--------HHHHHHHHHHHhhcCCceEEEEEeCC-CC-CCCC-CCCHHHHHHHHHHHhhCCeEEEE
Q 037587 164 SSSNGFRI-----T--------ISALENAYQQAQTLNLKVKGVLITNP-SN-PLGT-AMTHQELNHLINFSKSKRIHIVS 227 (464)
Q Consensus 164 ~~~~~~~~-----d--------~~~l~~~i~~~~~~~~~~~~vil~~P-~N-PtG~-~~s~~~l~~i~~~~~~~~~~lI~ 227 (464)
.. .|.. + ++.+++.+.. ....++.+|++. | .. -.|. ..+.+.++++.++|++||+++|.
T Consensus 165 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvivE-Piqg~~gG~~~~~~~fl~~lr~lc~~~gillI~ 239 (443)
T PRK07483 165 CY--AYREQRAGESDEAYGQRLADELEAKILE--LGPDTVAAFVAE-TVVGATAGAVPPVPGYFKRIREVCDRYGVLLIL 239 (443)
T ss_pred Cc--cccccccCCCHHHHHHHHHHHHHHHHHh--cCCCceEEEEEe-CcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEE
Confidence 10 1110 0 2344444431 112356666554 5 32 2354 55677899999999999999999
Q ss_pred eccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc-EEEEEEecCHHHHHHHHHh------c
Q 037587 228 DEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF-RVGMIYSNNERVVSAATKM------S 300 (464)
Q Consensus 228 Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl-RiG~l~~~~~~~~~~~~~~------~ 300 (464)
||+..++ +..+ .+.. .+... ..+. +-+++|.+| .|+ .+|.+++++ .+.+.+... .
T Consensus 240 DEV~tGf--GRtG-~~~a-~~~~g---------v~PD---iv~~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~h~ 301 (443)
T PRK07483 240 DEVMCGM--GRTG-TLFA-CEEDG---------VAPD---LVTIAKGLG-AGYQPIGAVLASD-RIYDAIADGSGFFQHG 301 (443)
T ss_pred ecceeCc--ccCc-HHHH-HhhcC---------CCCC---eeeehhhhc-cCccccEEEEEcH-HHHHHHhcCCCccccC
Confidence 9999874 3221 1111 11110 1122 337899998 895 999999954 454444321 1
Q ss_pred ccCCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccC-----
Q 037587 301 SFGLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN----- 372 (464)
Q Consensus 301 ~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~----- 372 (464)
..+..++++.+++.+.|+ +.++ .+..+++-+.+++. |.+.+++++.....-.-|+++-+++.......
T Consensus 302 ~T~~gnpl~~aaa~a~l~~i~~~~l-~~~~~~~g~~l~~~---L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~ 377 (443)
T PRK07483 302 HTYLGHATACAAALAVQRVIAEDGL-LANVRARGEQLRAR---LRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDP 377 (443)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH---HHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCc
Confidence 122356666666665554 3332 22233333333222 32323333321111234567777774321100
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCCC-CCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSSC-HCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~f-~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.......++..++ ++||++.+.... .....+.+|+.... ++++++++++++|.+++.+.
T Consensus 378 ~~~~~~~~~~~~~-~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~ 438 (443)
T PRK07483 378 ALKLHARIKREAM-ARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAA 438 (443)
T ss_pred hhhHHHHHHHHHH-HCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0011224556655 679999875311 11113579998876 79999999999999998754
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.3e-12 Score=126.10 Aligned_cols=353 Identities=12% Similarity=0.087 Sum_probs=191.1
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ ...+ ..|.+.+++.++.+ .+..++...-..+....+|+.+.+...
T Consensus 41 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-------------~l~~~~~~~~~~~~~~~la~~L~~~~p- 106 (445)
T PRK09221 41 MYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAA-------------TLDYAPAFQMGHPLAFELAERLAELAP- 106 (445)
T ss_pred cEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHH-------------hccCccccccCCHHHHHHHHHHHHhCC-
Confidence 34445566788998765 2333 34666666665422 111111111113444556666654321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC-------C-CCeEEEcCCCCCChhhhcccCCCc------------EEEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD-------P-GDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~ 163 (464)
-..+.|+++++++|++..+++.... + ..+|+...-+|++....+....|. .+..+|.
T Consensus 107 ---~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~ 183 (445)
T PRK09221 107 ---GGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPH 183 (445)
T ss_pred ---CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCC
Confidence 1236899999999999999886421 1 257888888887754321111111 1122221
Q ss_pred CC---CCCccc--------CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 164 SS---SNGFRI--------TISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 164 ~~---~~~~~~--------d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
.. ...+.. .++.+++.++.. ...++.+|++.-.....|... +.+.++++.++|+++|+++|+||++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~ 261 (445)
T PRK09221 184 TLDLPENAFSKGQPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVI 261 (445)
T ss_pred CccccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh
Confidence 10 000111 124555555421 113566655553355667754 5667999999999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH---------hcc
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK---------MSS 301 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~---------~~~ 301 (464)
.+ |+..+.. .. .+... ..+. +.+++|.++ .| +.+|.++++ +.+.+.+.. ...
T Consensus 262 tG--~GRtG~~-~~-~~~~g---------v~PD---i~~~gK~l~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~~ 323 (445)
T PRK09221 262 TG--FGRLGAA-FA-AERFG---------VTPD---IITFAKGLT-NGAIPMGAVIAS-DEIYDAFMQGPEYAIEFFHGY 323 (445)
T ss_pred hC--CCcCchh-hH-HHhcC---------CCCC---EEEeccccc-cCcccceeeEEc-HHHHHhhccCccccccccccc
Confidence 76 4322101 11 11110 1122 348999997 66 689998884 445444321 111
Q ss_pred cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-ee-cCCccEEEEEecCcccccCChhHHH
Q 037587 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR-CL-KSNAGLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 302 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~-~~~~g~f~~~~l~~~~~~~~~~~~~ 378 (464)
.+..++++.+++.+.|+.-. + +...+..++.-+++.+.|+++ +.. +. .-.-|+++-+++........ ....
T Consensus 324 T~~~~pl~~aaa~a~L~~i~--~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~-~~~~ 397 (445)
T PRK09221 324 TYSAHPVACAAGLATLDIYR--E---EDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPG-ARGY 397 (445)
T ss_pred CCCcCHHHHHHHHHHHHHHH--h---ccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEeccccccc-chHH
Confidence 22345666555555443211 0 112334444445555555543 211 11 11235666666643211111 1123
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 379 ELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
++...++ ++||+++++ .+.+|++... ++++++++++++|++++.+
T Consensus 398 ~~~~~~~-~~Gv~~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 398 EAFMKCF-EKGLLVRYT-------GDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred HHHHHHH-HCCeEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 4566654 679999753 2469999766 7999999999999999865
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.2e-12 Score=126.70 Aligned_cols=353 Identities=15% Similarity=0.109 Sum_probs=190.9
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.....+||+..+ .+.+ ..|.+.+++.++... ......+. ....+.+..+|+.+-+...
T Consensus 41 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----------~~~~~~~~--~~~~~~~~~lae~L~~~~p-- 106 (460)
T PRK06105 41 YVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKK----------LPFYHTFS--HKSHGPVIDLAEKLVAMAP-- 106 (460)
T ss_pred EEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHh----------CCCeeccc--ccCCHHHHHHHHHHHHhCC--
Confidence 4444556788998765 3333 346666666664221 11011111 1124445556666654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc------C-C-CCeEEEcCCCCCChhhhcccCCCcE------------EEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA------D-P-GDAFLLPTPYYPGFDRDLKWRPGVE------------IVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v~~~ 164 (464)
..-+.++++++++|++..+++... . + ..+|+...-+|++....+....+.. +..++..
T Consensus 107 --~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p 184 (460)
T PRK06105 107 --VPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCP 184 (460)
T ss_pred --CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCC
Confidence 223689999999999999998742 1 2 2578888888877543321111211 1112111
Q ss_pred CCCCccc-------------CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEecc
Q 037587 165 SSNGFRI-------------TISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEI 230 (464)
Q Consensus 165 ~~~~~~~-------------d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Dea 230 (464)
+.+.. ..+.+++.+.. ....++.+|++---..-.|.. .|.+-++++.++|+++|+++|.||+
T Consensus 185 --~~~~~~~~~~~~~~~~~~~~~~le~~~~~--~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv 260 (460)
T PRK06105 185 --HYYRFGLPGESEEAFATRLANELEALILA--EGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEV 260 (460)
T ss_pred --cccccccCCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEecc
Confidence 00110 12445555532 112356655554224555665 5788899999999999999999999
Q ss_pred ccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh---------c
Q 037587 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM---------S 300 (464)
Q Consensus 231 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~---------~ 300 (464)
+.++.-.+. . ... +.. + ..+. +.+|+|.+| .| +.+|.++++ +.+.+.+... .
T Consensus 261 ~tG~GRtG~--~-f~~-~~~-~--------v~PD---i~~~gK~lg-gG~~P~~av~~~-~~i~~~~~~~~~~~~~~~h~ 322 (460)
T PRK06105 261 ICGFGRTGN--M-FGC-ETF-G--------IKPD---ILVMSKQLS-SSYQPLSAVLMN-EKVYDPIADESGKIGTFGHG 322 (460)
T ss_pred ccCCCcCch--h-hhH-Hhc-C--------CCCC---eeeeecccc-cCcccceEEEEc-HHHHHHHhcccccCcccccC
Confidence 976422222 1 111 111 1 1122 448999998 67 689999995 4455544321 1
Q ss_pred ccCCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccC-C---
Q 037587 301 SFGLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN-T--- 373 (464)
Q Consensus 301 ~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~-~--- 373 (464)
..+..++++.+++.+.|+ +.++ .+..+++-+.+++. |.+ |+++++......-|+++-+++....... .
T Consensus 323 ~T~~gnpl~~aaa~a~L~~i~~~~l-~~~v~~~g~~l~~~---L~~-l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~ 397 (460)
T PRK06105 323 FTASGHPVAAAVALENLAIIEERDL-VGNAAERGARLQAR---LRA-LADHPLVGEVRGVGLIAAVELVADKATKTPFEP 397 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH---HHH-hhcCCCeEEEEecceEEEEEEecCcccCCCCCc
Confidence 112355666665555443 3332 22233333333222 222 2333322222233577777774221110 0
Q ss_pred -hhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 374 -FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 374 -~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
......+...+ .++||++.+. .+.+|++... +++++++++++++.+++++.
T Consensus 398 ~~~~a~~i~~~~-~~~Gvl~~~~-------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 450 (460)
T PRK06105 398 PGKVGARANAAA-HEHGVISRAM-------GDTLAFCPPLIITAAQVDEMVDRFGRALDDV 450 (460)
T ss_pred hhHHHHHHHHHH-HHCCeEEEec-------CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 01122455555 4679999863 1369999876 69999999999999998764
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-11 Score=125.58 Aligned_cols=359 Identities=14% Similarity=0.075 Sum_probs=190.8
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+. ...+....-..+.+..+|+.+-.....
T Consensus 56 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~-------------~~~~~~~~~~~~~~~~la~~L~~~~p~- 121 (464)
T PRK06938 56 YVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLAD-------------ELPLHTLDLTTPVKDQFVQDLFASLPE- 121 (464)
T ss_pred EEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHh-------------hhcccccccCCHHHHHHHHHHHHhCcc-
Confidence 4445566778998655 3333 346677776664221 011111011234444555555432110
Q ss_pred CCCC-CCcEEEe-CChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc------------EEEEEecCCCC-
Q 037587 105 VKFD-PNKLVLT-AGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCSSSN- 167 (464)
Q Consensus 105 ~~~~-~~~i~it-~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~~~~- 167 (464)
... .+.++++ ++++|++..+++... ....+|+...-+|++....+....|. .+..++.+...
T Consensus 122 -~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~ 200 (464)
T PRK06938 122 -AFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYR 200 (464)
T ss_pred -cccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCcccc
Confidence 011 1356665 799999999988642 22367888888887754332111010 12223321100
Q ss_pred -Ccc--------cCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEecccccccc
Q 037587 168 -GFR--------ITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVF 236 (464)
Q Consensus 168 -~~~--------~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~ 236 (464)
.+. .+++.+++.+.+......++.+||+ -| ..-.|.+ .|.+-++++.++|+++|+++|.||+..+ |
T Consensus 201 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~-EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tG--f 277 (464)
T PRK06938 201 CPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVIL-EVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSG--F 277 (464)
T ss_pred ccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEE-ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--C
Confidence 010 1245666666432111125666555 45 3344664 4688899999999999999999999987 4
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHH
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLS 314 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~ 314 (464)
+..+ .+.. .+. + +..+. +-+++|.+| .|+.+|.++++++ + +.+.. ....+..++++.+++.
T Consensus 278 GRtG-~~~a-~e~---~------gv~PD---iv~~gKglg-gG~PlsAv~~~~~-~-~~~~~~~~~~T~~gnpla~Aaa~ 340 (464)
T PRK06938 278 GRTG-KMFA-FEH---A------GIIPD---VVVLSKAIG-GSLPLAVVVYREW-L-DTWQPGAHAGTFRGNQMAMAAGS 340 (464)
T ss_pred CcCc-HHHH-HHh---c------CCCCC---EEEeecccc-CCCceEEEeehhH-h-hccCCCCCCCCCCcCHHHHHHHH
Confidence 3221 1111 111 1 01123 337799998 8999999998543 3 32221 1122235667766666
Q ss_pred HHcCC---chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc-------C-ChhHHHHHHHH
Q 037587 315 RMLSD---KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS-------N-TFEAEKELWKK 383 (464)
Q Consensus 315 ~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~-------~-~~~~~~~l~~~ 383 (464)
+.|+- .+. .++.+++-+.+++. |.+..+++++......-|+++.+++...... . .......++..
T Consensus 341 a~L~~l~~~~l-~~~~~~~G~~l~~~---L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (464)
T PRK06938 341 ATLRYIKEHRL-AEHAAAMGERLREH---LRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRE 416 (464)
T ss_pred HHHHHHHHhHH-HHHHHHHHHHHHHH---HHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHH
Confidence 66542 222 22222222223222 2222223343222234467888887432110 0 01112245555
Q ss_pred HHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 384 IIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
++ ++||++.++..+ .+.+|+.... +++++++++++++.+++.+
T Consensus 417 ~~-~~Gll~~~~g~~----~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 417 CL-RRGLILELGGRH----GSVVRFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred HH-HCCeEEeecCCC----CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 55 689999875322 3579998665 7999999999999999875
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-12 Score=139.19 Aligned_cols=356 Identities=13% Similarity=0.158 Sum_probs=193.3
Q ss_pred CCCCCCCCceEEeeccccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC
Q 037587 29 YDQLHNPSGIIQMGLAENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK 106 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~ 106 (464)
|..+.....+||+..+...+. .|.+.+++.++... .....+| ..+....+++.+.....
T Consensus 578 ~l~D~dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~----------l~~~~~~-----~~~~~~elae~L~~~~p---- 638 (972)
T PRK06149 578 HLFDMAGRSYLDMVNNVTVLGHGHPRLAAAAARQWSL----------LNTNSRF-----HYAAVAEFSERLAALAP---- 638 (972)
T ss_pred EEEeCCCCEEEECCCCccccCCCCHHHHHHHHHHHHh----------ccccccc-----cCHHHHHHHHHHHHhCC----
Confidence 333445667899986654443 46677666554221 1111122 12344455555543211
Q ss_pred CCCCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCCCChhhhcc-cC------CCc------EEEEEecCC--CCC
Q 037587 107 FDPNKLVLTAGSTAANETLMFC---LADPGDAFLLPTPYYPGFDRDLK-WR------PGV------EIVPIHCSS--SNG 168 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~-~~------~g~------~~~~v~~~~--~~~ 168 (464)
-..+.++++++++|++..+++. +. ....|+..+-+|++....+. .. .+. .+..++... ...
T Consensus 639 ~~~~~v~f~~SGsEA~e~AlklAr~~t-gr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~ 717 (972)
T PRK06149 639 DGLDTVFLVNSGSEANDLAIRLAWAAS-GRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGR 717 (972)
T ss_pred CCcCEEEEeCCchHHHHHHHHHHHHhc-CCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCc
Confidence 1236899999999999999884 33 23568888878876432210 00 000 012222111 011
Q ss_pred cc-cC-----HHHHHHHHHHHhhcCCceEEEEEeCC--CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 169 FR-IT-----ISALENAYQQAQTLNLKVKGVLITNP--SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 169 ~~-~d-----~~~l~~~i~~~~~~~~~~~~vil~~P--~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
|. .+ .+.+++.++.....+.++.+||+ -| ++-.....|.+-++++.++|+++|+++|.||++.+ |+..+
T Consensus 718 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~-Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tG--fGRtG 794 (972)
T PRK06149 718 FRGADSAADYVRDVVAQLEELDASGRGLAGFIC-EPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVG--YGRLG 794 (972)
T ss_pred CCCcccHHHHHHHHHHHHHHHhhcCCceEEEEE-cccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhc--CCccC
Confidence 21 11 24455555443333446665555 45 34433556788899999999999999999999976 43321
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc---CCCChHHHHHHHHHc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF---GLVSSQTQYLLSRML 317 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l 317 (464)
..+...-.+ + ..+.+ -+|+|.+| .|+.+|.++++ +.+.+.+.....+ +..++++.+++.+.|
T Consensus 795 ~~~~a~e~~--g--------v~PDi---vt~gK~lg-~G~Pl~av~~~-~~i~~~~~~~~~~~sT~~gnP~~~aaala~L 859 (972)
T PRK06149 795 HYFWGFEQQ--G--------VVPDI---ITMAKGMG-NGHPLGAVITR-REIAEALEAEGYFFSSTGGSPVSCRIGMAVL 859 (972)
T ss_pred ccchhhhhc--C--------CCCCE---EEeccccc-CCeeeEEEEEc-HHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence 122221111 0 11222 38999998 89999999994 4555554321111 235666666666655
Q ss_pred C---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEE
Q 037587 318 S---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 318 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v 392 (464)
+ +.++ .+..+++-+.+++. |.+...++++....-.-|+|+-+++...... ........++..++ ++||++
T Consensus 860 ~~i~~e~l-~~~~~~~G~~l~~~---L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~-~~Gvl~ 934 (972)
T PRK06149 860 DVLREEKL-QENARRVGDHLKAR---LEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLL-ELGVIM 934 (972)
T ss_pred HHHHhcCH-HHHHHHHHHHHHHH---HHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHH-hCCeEE
Confidence 4 2222 22222222222222 2222223333222223467888887421111 11122334666665 679999
Q ss_pred eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 393 SPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 393 ~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
.+... ..+.+||.... ++++++++++++|.+++.+
T Consensus 935 ~~~g~----~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 935 QPTGD----HLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred eecCC----CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 87532 24679988765 6999999999999999864
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-11 Score=126.05 Aligned_cols=349 Identities=13% Similarity=0.108 Sum_probs=187.1
Q ss_pred CCCCCceEEeecc-cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 32 LHNPSGIIQMGLA-ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 32 ~~~~~~~i~l~~~-~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
+.+...+||+..+ ...+ ..|.+.+++.++.+. +. +....-..+....+++.+.+... -.
T Consensus 68 D~dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~-------------~~-~~~~~~~~~~~~~lae~L~~~~p----~~ 129 (459)
T PRK06082 68 DVDGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAK-------------LP-FSPRRFTNETAIECAEKLTEIAG----GE 129 (459)
T ss_pred ECCCCEEEEcccHhhcccCCCCHHHHHHHHHHHHh-------------CC-CccCccCCHHHHHHHHHHHHhCC----CC
Confidence 3455678898633 2223 346677766664221 11 11111124555666666654322 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcE------------EEEEecCC--CCCcc-c
Q 037587 109 PNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVE------------IVPIHCSS--SNGFR-I 171 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v~~~~--~~~~~-~ 171 (464)
.+.+++++++++++..+++... ....+|+...-+|++....+....|.. +..+|... ...|. .
T Consensus 130 ~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (459)
T PRK06082 130 LNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDA 209 (459)
T ss_pred CCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCCh
Confidence 3689999999999999987642 223678888888877542221111211 11222110 00011 0
Q ss_pred C------HHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 172 T------ISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 172 d------~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
+ ++.+++.+++ ..++.+|++ -| .+..+...+.+.++++.++|+++|+++|.||+..+ |+..+..+
T Consensus 210 ~~~~~~~~~~l~~~i~~----~~~vAavIv-EPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG--~GRtG~~f- 281 (459)
T PRK06082 210 DGSDVHYADYLEYVIEK----EGGIGAFIA-EAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNG--MGRTGEWF- 281 (459)
T ss_pred hHHHHHHHHHHHHHHhc----CCCEEEEEE-CCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC--CCccchhh-
Confidence 1 2345555532 235655555 45 44334567778899999999999999999999986 43221011
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH-hc-ccCCCChHHHHHHHHHcC---
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK-MS-SFGLVSSQTQYLLSRMLS--- 318 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~-~~-~~~~~s~~~q~~~~~~l~--- 318 (464)
. .+.. + ..+.++ +|+|.+| .| +.+|.++++++ +...... .. ..+..++++.+++.+.|+
T Consensus 282 a-~e~~-g--------v~PDiv---~~gKgl~-gG~~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~ 346 (459)
T PRK06082 282 T-HQAY-G--------IEPDIL---CIGKGLG-GGLVPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIE 346 (459)
T ss_pred H-hHhh-C--------CCCCEE---Eeccccc-CCCCcceEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 1 1111 1 112333 5899998 77 59999998543 4333211 11 112356666666555544
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
+.++ .++.+++-+.+++. |.+...++++....-.-|+++.+++...... ........+...++ ++||++.+..
T Consensus 347 ~~~l-~~~~~~~g~~l~~~---L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~ 421 (459)
T PRK06082 347 QEGL-LEKVKADSQFMRER---LLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCL-NNGLSFKVSQ 421 (459)
T ss_pred hcCH-HHHHHHHHHHHHHH---HHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHH-hCCCEEEecC
Confidence 2222 22233322222222 2222222333222223456777877532111 11111224555554 6799997631
Q ss_pred CCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 397 SCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 397 ~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+.+|++... +++++++++++++.+++.+.
T Consensus 422 ------~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~ 452 (459)
T PRK06082 422 ------GNVIQLSPPLIITREELTQALAILEEAIAKI 452 (459)
T ss_pred ------CCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 3579999765 69999999999999998764
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-11 Score=125.92 Aligned_cols=356 Identities=12% Similarity=0.073 Sum_probs=194.4
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+. +...... .-..+.+..+|+.+.+.....
T Consensus 57 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----------l~~~~~~---~~~~~~~~~lae~L~~~~p~~ 123 (472)
T PRK08742 57 WLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGE----------LEQVMLA---GFTHEPAVQLAEQLLAIAPRQ 123 (472)
T ss_pred EEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHh----------CCCcccc---ccCCHHHHHHHHHHHHhCCCc
Confidence 4445556778998765 3333 346676776664221 1111111 111344566666665432100
Q ss_pred C-CCCCCcEEEeCChHHHHHHHHHHhcC-------C-CCeEEEcCCCCCChhhhcccCCCcE------------EEEEec
Q 037587 105 V-KFDPNKLVLTAGSTAANETLMFCLAD-------P-GDAFLLPTPYYPGFDRDLKWRPGVE------------IVPIHC 163 (464)
Q Consensus 105 ~-~~~~~~i~it~G~~~al~~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v~~ 163 (464)
. .-..+.+++++++++++..+++.... + ..+|+...-+|++....+....|.. +..+|.
T Consensus 124 ~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~ 203 (472)
T PRK08742 124 DGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPS 203 (472)
T ss_pred ccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCC
Confidence 0 00135899999999999999887521 2 2679999988887653322211211 122222
Q ss_pred CCCC--Cccc--------CHHHHHHHHHHHhhcCCceEEEEEeCC--CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEecc
Q 037587 164 SSSN--GFRI--------TISALENAYQQAQTLNLKVKGVLITNP--SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEI 230 (464)
Q Consensus 164 ~~~~--~~~~--------d~~~l~~~i~~~~~~~~~~~~vil~~P--~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Dea 230 (464)
.... .+.. +++.+++.+.. ...++.+|++. | .+-.|. ..|.+.++++.++|+++|+++|.||+
T Consensus 204 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~E-Pviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV 279 (472)
T PRK08742 204 PDAYLAEPGQSAEDYALQAADALQALFEQ---SPGEICALILE-PRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEI 279 (472)
T ss_pred CCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEc-cccccCCCcccCCHHHHHHHHHHHHHcCCEEEEech
Confidence 1000 0011 13455555532 23466665554 5 455576 45778899999999999999999999
Q ss_pred ccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc-EEEEEEecCHHHHHHHHH--------hcc
Q 037587 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF-RVGMIYSNNERVVSAATK--------MSS 301 (464)
Q Consensus 231 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl-RiG~l~~~~~~~~~~~~~--------~~~ 301 (464)
..++...+. . ... +.. + ..+.++ +++|.+| .|+ .+|.++++ +.+.+.+.. ...
T Consensus 280 ~TGfGRtG~--~-~a~-e~~-g--------v~PDiv---~~gKgl~-gG~~Plaav~~~-~ei~~~~~~~~~~~~~~h~~ 341 (472)
T PRK08742 280 ATGFGRTGT--L-FAC-EQA-G--------VMPDLL---CLSKGLT-GGFLPLSAVLAT-QQLYDAFLDDSRERAFLHSH 341 (472)
T ss_pred hhCCCCCcc--c-hHH-Hhc-C--------CCCCEE---EEccccc-CCCCCcceeecc-HHHHHHhhccCccCccCcCC
Confidence 987422222 1 111 111 0 112333 6799998 884 99999984 445444321 111
Q ss_pred cCCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCCh----
Q 037587 302 FGLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTF---- 374 (464)
Q Consensus 302 ~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~---- 374 (464)
.+..++++.+++.+.|+ +.++ .+..+++-+.+ ..+.+.+.++.+-...-.-|+++-+++.........
T Consensus 342 T~~gnpl~~Aaa~a~L~~i~~~~l-~~~~~~~g~~l----~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~ 416 (472)
T PRK08742 342 SYTGNPLACAAALATLDIFADDDV-IARNQPTAARM----TQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPA 416 (472)
T ss_pred CCCccHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHH----HHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCch
Confidence 12346666666655554 2222 22222222222 233334444432111223467888887532111100
Q ss_pred -hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 375 -EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 375 -~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.....+...++ ++||++.+. .+.+||.... ++++++++++++|.+++++.
T Consensus 417 ~~~~~~~~~~~~-~~Gll~~~~-------g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 417 ARVGLHAYRAAL-ARGVVLRPL-------GDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred hHHHHHHHHHHH-HCCeEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11123455554 679999863 1479999877 79999999999999998753
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-12 Score=126.94 Aligned_cols=346 Identities=14% Similarity=0.088 Sum_probs=190.8
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+ .........-..+.+..+|+.+.+...
T Consensus 36 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~-------------~~~~~~~~~~~~~~~~~la~~L~~~~p-- 100 (428)
T PRK07986 36 ELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQID-------------AMSHVMFGGITHPPAIELCRKLVAMTP-- 100 (428)
T ss_pred EEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHh-------------hcCCccccccCCHHHHHHHHHHHhhCC--
Confidence 4444556778998764 3333 34667777766422 111110001123455666666654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC-------CCCeEEEcCCCCCChhhhcccCCCc-------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD-------PGDAFLLPTPYYPGFDRDLKWRPGV-------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~-------~gd~Vlv~~p~y~~~~~~~~~~~g~-------------~~~~v~~~ 164 (464)
...+.++++++++|++..+++.... +..+|+....+|++....+....+- .++.++..
T Consensus 101 --~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p 178 (428)
T PRK07986 101 --QPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAP 178 (428)
T ss_pred --CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCC
Confidence 2236899999999999999886431 2367999999987754222111111 01122211
Q ss_pred CC---CCc-ccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 165 SS---NGF-RITISALENAYQQAQTLNLKVKGVLITNP-SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 165 ~~---~~~-~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
.. ..| .-|++.+++.++. .+.++.+|++... ..-.|. ..+++.+++|.++|+++|+++|+||++.+ |+.
T Consensus 179 ~~~~~~~~~~~d~~~l~~~l~~---~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG--~Gr 253 (428)
T PRK07986 179 QSRFDGEWDERDIAPFARLMAA---HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATG--FGR 253 (428)
T ss_pred CcccchhhHHHHHHHHHHHHHh---CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--Ccc
Confidence 00 001 1245667766643 2335655555431 444565 34668899999999999999999999976 432
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh-------cccCCCChHHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM-------SSFGLVSSQTQ 310 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~-------~~~~~~s~~~q 310 (464)
.+..+ .. +.. + ..+.++ +|+|.+| .| +.+|.++++ +.+.+.+... ...+..++++.
T Consensus 254 tG~~f-a~-~~~-g--------v~PDi~---t~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~ 317 (428)
T PRK07986 254 TGKLF-AC-EHA-G--------IAPDIL---CLGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLAC 317 (428)
T ss_pred CCCee-ee-ccc-C--------CCCCEE---Eechhhh-CCcccCcchhch-HHHHHHhhcCCCCccccCCCCCcCHHHH
Confidence 21111 10 111 0 112222 6999997 78 588888884 4555555331 11123456666
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-C---CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHH
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-G---IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIF 386 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g---~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~ 386 (464)
+++.+.|+--+- . ..++.++++-+++.+.|+++ . +.-.. .-|+++-+.+.... ....+...+ .
T Consensus 318 aaa~a~L~~i~~-~----~~~~~~~~~g~~l~~~l~~l~~~~~i~~vR-g~Gl~~~ve~~~~~------~~~~~~~~l-~ 384 (428)
T PRK07986 318 AVANASLSLLES-G----DWQQQVAAIEAQLREELAPLRDAPMVADVR-VLGAIGVVETTRPV------NMAALQRFF-V 384 (428)
T ss_pred HHHHHHHHHHHh-C----CHHHHHHHHHHHHHHHHHHHhcCCCEEeEe-ccceEEEEEeCCcc------cHHHHHHHH-H
Confidence 665555442110 0 11223333334444444432 1 11112 23567777775321 122355555 4
Q ss_pred hcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 387 EVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 387 ~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
++||++.+.. +.+|+.... ++++++++++++|.+++++.
T Consensus 385 ~~Gl~~~~~g-------~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 424 (428)
T PRK07986 385 EQGVWIRPFG-------KLIYLMPPYIILPEQLQRLTAAVNRAVQDE 424 (428)
T ss_pred HCCcEEEecC-------CEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 7899998641 379998766 79999999999999998653
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-12 Score=125.69 Aligned_cols=346 Identities=13% Similarity=0.087 Sum_probs=191.5
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ ...+ ..|.+.+++.++.+. +..+....-..+.+..+|+.+-+..
T Consensus 36 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~-------------~~~~~~~~~~~~~~~~lae~L~~~~-- 100 (429)
T PRK06173 36 VMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAK-------------MSHIMFGGFTHEPAVELAQKLLEIL-- 100 (429)
T ss_pred eEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHh-------------cCCccccccCCHHHHHHHHHHHhhC--
Confidence 34555567788998764 2232 346666666664221 1111100011344455555554321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCCc-------------EEEEEe
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPGV-------------EIVPIH 162 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g~-------------~~~~v~ 162 (464)
+...+.+++++++++++..+++.... +| .+|+....+|++....+....+- .+..+|
T Consensus 101 --p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
T PRK06173 101 --PPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLP 178 (429)
T ss_pred --CCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeC
Confidence 12246899999999999999886431 23 57888888888743221111010 011222
Q ss_pred cCCCCCcc-----cCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 163 CSSSNGFR-----ITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 163 ~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
... ..+. -+++.+++.+.. .+.++.+|++.-. ..-.|.. .|.+.++++.++|+++|+++|+||++.+
T Consensus 179 ~p~-~~~~~~~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG-- 252 (429)
T PRK06173 179 QPS-IKFGEEWNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATG-- 252 (429)
T ss_pred CCC-cccchhHHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcC--
Confidence 110 0010 124555666542 2346776666531 4555765 6788899999999999999999999976
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH-------hcccCCCCh
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK-------MSSFGLVSS 307 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~-------~~~~~~~s~ 307 (464)
|+..+..+ . .+.. + ..+.++ +|+|.+| .| +.+|.++++ +.+.+.+.. ....+..++
T Consensus 253 ~GrtG~~~-a-~~~~-g--------v~PDiv---~~gK~l~-gG~~p~~a~~~~-~~i~~~~~~~~~~~~~~~~T~~g~p 316 (429)
T PRK06173 253 FGRTGKLF-A-LEHA-G--------VVPDIM---CIGKALT-GGYLTLSATITT-EAIAQTICSGEAKCFMHGPTFMANP 316 (429)
T ss_pred CCcCCcch-H-HHhc-C--------CCCCEE---Eeehhhh-CCccccceEEec-HHHHHHHhcCCCCccccCCCCCcCH
Confidence 43321111 1 1111 1 112222 4999997 78 478888874 445444431 111122455
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec--CCccEEEEEecCcccccCChhHHHHHHHHH
Q 037587 308 QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK--SNAGLFCWVDMRHLLVSNTFEAEKELWKKI 384 (464)
Q Consensus 308 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~--~~~g~f~~~~l~~~~~~~~~~~~~~l~~~l 384 (464)
++.+++.+.|+--. + +..++.++++-++|.+.|++. +.+... -..|+++-+.+..... ...+...+
T Consensus 317 ~~~aaa~a~l~~i~---~--~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~------~~~i~~~l 385 (429)
T PRK06173 317 LACAIAAESIRLLL---E--SPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVN------MATLQPRF 385 (429)
T ss_pred HHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCccc------HHHHHHHH
Confidence 66665555544211 0 012333444445555555543 333221 1235677777753211 12355555
Q ss_pred HHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 385 IFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
.++||++.+.. +.+||.... ++++++++++++|.+++.+
T Consensus 386 -~e~Gi~v~~~g-------~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 386 -VEHGIWVRPFG-------KLVYIMPPFIISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred -HHCCeEEEecC-------CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 46799997641 379999877 7999999999999999875
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-11 Score=124.41 Aligned_cols=351 Identities=12% Similarity=0.086 Sum_probs=191.9
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++.+. +.....+ .-..+.+..+|+.+.+...
T Consensus 49 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~----------l~~~~~~---~~~~~~~~~lae~L~~~~p-- 113 (460)
T PRK06916 49 KLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNK----------IAHSTLL---GLANVPSILLAEKLIEVVP-- 113 (460)
T ss_pred EEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHh----------CCCcccc---ccCCHHHHHHHHHHHHhCC--
Confidence 4444556778998654 3333 456677777665321 1111111 0113444556666554321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCCc------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~ 164 (464)
...+.+++++++++++..+++.... +| .+|+...-+|++....+....|. .+..+|..
T Consensus 114 --~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p 191 (460)
T PRK06916 114 --EGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYP 191 (460)
T ss_pred --CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCC
Confidence 1236899999999999999886431 33 67899998888754322111111 11222211
Q ss_pred C--CCCcc--------cCHHHHHHHHHHHhhcCCceEEEEEeC-CCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 165 S--SNGFR--------ITISALENAYQQAQTLNLKVKGVLITN-PSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 165 ~--~~~~~--------~d~~~l~~~i~~~~~~~~~~~~vil~~-P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. ...+. -+++.+++.+++ .+.++.+|++.- ...-.|.+ .|.+.++++.++|+++|+++|.||++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~T 268 (460)
T PRK06916 192 YTYRSPYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVAT 268 (460)
T ss_pred cccccccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhh
Confidence 0 00011 124455555542 234677666653 24555765 588889999999999999999999997
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH---------hccc
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK---------MSSF 302 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~---------~~~~ 302 (464)
+ |+..+ .... .+.. + ..+.+ -+++|.+| .| +.+|.+++++ .+.+.+.. ....
T Consensus 269 G--~GRtG-~~~a-~~~~-g--------v~PDi---v~~gK~l~-gG~~Pi~av~~~~-ei~~~~~~~~~~~~~~~~~~T 330 (460)
T PRK06916 269 G--FGRTG-KMFA-CEHE-N--------VTPDI---MTAGKGLT-GGYLPIAITVTTD-EIYNAFYGDYEEQKTFFHGHS 330 (460)
T ss_pred C--CCcCc-hhhH-HHhc-C--------CCCCe---eeeehhhh-cCccccceeeecH-HHHHHhhccccccCccccCCC
Confidence 6 43221 1111 1111 0 11223 37899998 88 5999999954 45443321 1111
Q ss_pred CCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHh---CCCeeecCCccEEEEEecCcccccC----
Q 037587 303 GLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKV---AGIRCLKSNAGLFCWVDMRHLLVSN---- 372 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~g~~~~~~~~g~f~~~~l~~~~~~~---- 372 (464)
+..++++.+++.+.|+ +.++ .+.+++.-+++.+.|++ +........-|+++-+++.......
T Consensus 331 ~~gnpl~~aaa~a~l~~l~~~~l--------~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~ 402 (460)
T PRK06916 331 YTGNPLGCAVALANLELYEKTNL--------IEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFE 402 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHhccH--------HHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCC
Confidence 2246666666655553 2222 22233333334444433 2211111233567777764321110
Q ss_pred -ChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 373 -TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 373 -~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.......+...++ ++||++.|.. +.+|+..+. ++++++++++++|.+++++..
T Consensus 403 ~~~~~~~~i~~~~~-~~Gvl~~~~g-------~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 403 WTERVGVQVCKRSR-ELGMLTRPLG-------NTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred chhhHHHHHHHHHH-HCCeEEEecC-------CEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 0011124555554 6799998641 368888665 799999999999999997643
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-11 Score=123.21 Aligned_cols=355 Identities=16% Similarity=0.136 Sum_probs=184.3
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++.+. +.....+ ..+..+....+++.+.+..+
T Consensus 47 ~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~----------~~~~~~~--~~~~~~~~~~lae~L~~~~p-- 112 (460)
T PRK12403 47 HLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQ----------LPYYNMF--FHTTHPAVIELSELLFSLLP-- 112 (460)
T ss_pred EEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHh----------CCCeecc--cccCCHHHHHHHHHHHHhCC--
Confidence 4444556678997654 1223 346666666664221 1111111 11234455555665544321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc-------CCCC-eEEEcCCCCCChhhhcccCCCcE-----------EEEEecCC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA-------DPGD-AFLLPTPYYPGFDRDLKWRPGVE-----------IVPIHCSS 165 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~-------~~gd-~Vlv~~p~y~~~~~~~~~~~g~~-----------~~~v~~~~ 165 (464)
-..+.+++++++++++..+++... ++++ .|+...-+|++.........|.+ +..+|...
T Consensus 113 --~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~ 190 (460)
T PRK12403 113 --GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPY 190 (460)
T ss_pred --CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCc
Confidence 123689999999999999998763 2333 35555667766432221111211 22222110
Q ss_pred --CCCcccC--------HHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 166 --SNGFRIT--------ISALENAYQQAQTLNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 166 --~~~~~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
...+... .+.+++.+.+. ...++.+|++ -| ..-.|.. .+.+-++++.++|+++|+++|.||++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iaavI~-Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tG 267 (460)
T PRK12403 191 WYANGGELTPAEFGRRAALQLEEKILEL--GAENVAGFVA-EPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGG 267 (460)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHHHh--CCCceEEEEE-ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 0001111 23444444321 1235555555 45 4455765 4677899999999999999999999976
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc-EEEEEEecCHHHHHHHHHh------cccCCCC
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF-RVGMIYSNNERVVSAATKM------SSFGLVS 306 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl-RiG~l~~~~~~~~~~~~~~------~~~~~~s 306 (464)
|+..+..+ .. +.. + ..+.++ +++|.+| .|+ .+|.++++ +.+.+.+... ...+..+
T Consensus 268 --fGRtG~~~-a~-e~~-g--------v~PDiv---~~gK~lg-gG~~Piga~v~~-~~i~~~~~~~~~~~~~~~T~~gn 329 (460)
T PRK12403 268 --FGRTGEWF-AH-EHF-G--------FEPDTL---SIAKGLT-SGYVPMGGLVLS-KRIAEALVEQGGVFAHGLTYSGH 329 (460)
T ss_pred --CCcCchhh-hh-hhc-C--------CCCCeE---EEccccc-ccccceEEEEEC-HHHHHHHhcCCCccccCCCCCCC
Confidence 43321011 10 111 0 112233 5999998 784 99988884 4555544321 1112245
Q ss_pred hHHHHHHHHHcC---CchhhHHHHH-HHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc-CChh----HH
Q 037587 307 SQTQYLLSRMLS---DKKFTCNYMK-ENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS-NTFE----AE 377 (464)
Q Consensus 307 ~~~q~~~~~~l~---~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~-~~~~----~~ 377 (464)
+++.+++.+.|+ +.++ .+... ++-+.++ +.|.+...++++......-|+++.+++...... .... ..
T Consensus 330 Pl~~Aaala~L~~i~~~~l-~~~~~~~~g~~l~---~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~ 405 (460)
T PRK12403 330 PVAAAVAIANLKALRDEGV-VTRVKDDTGPYLQ---RCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLA 405 (460)
T ss_pred HHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH---HHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHH
Confidence 666666655554 2222 11121 2222222 223333333443222224467777877432111 1000 01
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 378 KELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
..+...+ .++||++.+.. +.+|++... +++++++++++++.+++++.
T Consensus 406 ~~~~~~~-~~~Gll~~~~~-------~~~~l~Ppl~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 406 WRCRTIG-FEEGVIIRSTL-------GRMIMAPALVAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred HHHHHHH-HhCCEEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1223333 46799997531 348888876 69999999999999999765
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-11 Score=123.58 Aligned_cols=353 Identities=12% Similarity=0.081 Sum_probs=192.7
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ........-..+.+..+|+.+.+..
T Consensus 39 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~-------------l~~~~~~~~~~~~~~~lae~L~~~~-- 103 (466)
T PRK07030 39 VWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQ-------------LEHVILAGFSHEPVIELSERLVKIT-- 103 (466)
T ss_pred cEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHh-------------cCCccccccCCHHHHHHHHHHHHhC--
Confidence 34445566778998755 2223 346666666664221 1111111112455566666665432
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc------C-C-CCeEEEcCCCCCChhhhcccCCCc------------EEEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA------D-P-GDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~ 163 (464)
+...+.++++++++|++..+++... . + ..+|+...-+|++....+....|. .+..+|.
T Consensus 104 --p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~ 181 (466)
T PRK07030 104 --PPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPS 181 (466)
T ss_pred --CCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCC
Confidence 1123689999999999999988752 1 2 357888888888754332111111 1122221
Q ss_pred CCC--CCccc--------CHHHHHHHHHHHhhcCCceEEEEEeCC--CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEecc
Q 037587 164 SSS--NGFRI--------TISALENAYQQAQTLNLKVKGVLITNP--SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEI 230 (464)
Q Consensus 164 ~~~--~~~~~--------d~~~l~~~i~~~~~~~~~~~~vil~~P--~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Dea 230 (464)
... ..+.. +++.+++.+.+ .+.++.+|++. | ..-.|. ..+.+.++++.++|+++|+++|.||+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~E-P~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV 257 (466)
T PRK07030 182 PDCYLRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVE-PLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEI 257 (466)
T ss_pred CCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEe-cccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeeh
Confidence 110 00111 23445555542 23467666655 4 344565 45667899999999999999999999
Q ss_pred ccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH---------hc
Q 037587 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK---------MS 300 (464)
Q Consensus 231 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~---------~~ 300 (464)
..++.-.+. . .. .+.. + ..+.++ +|+|.+| .| +.+|.++++ +.+.+.+.. ..
T Consensus 258 ~TGfGRtG~--~-~a-~~~~-g--------v~PDiv---~~gKgl~-gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~h~ 319 (466)
T PRK07030 258 AVGFGRTGT--M-FA-CEQA-G--------IRPDFL---CLSKALT-GGYLPLAAVLTT-DTVYQAFYDDYPTLRAFLHS 319 (466)
T ss_pred hhCcCcccc--c-hH-HHhc-C--------CCCCEE---eeehhcc-CCcccceEEEec-HHHHHHHhcccccccccccC
Confidence 987422222 1 11 1111 0 112333 6799998 89 599999984 445444421 11
Q ss_pred ccCCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccC-----
Q 037587 301 SFGLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN----- 372 (464)
Q Consensus 301 ~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~----- 372 (464)
..+..++++.+++.+.|+ +.++ .++.+++-+.+++. |. .|.++......-.-|+++.+++.......
T Consensus 320 ~T~~gnpla~aaa~a~L~~i~~~~l-~~~~~~~G~~l~~~---L~-~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~ 394 (466)
T PRK07030 320 HSYTGNPLACAAALATLDIFEQDNV-IENNRALARRMAEA---TA-HLADHPHVAEVRQTGMILAIEMVQDKASKTPYPW 394 (466)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH---HH-HHhcCCCEEEeEeceeEEEEEeccCccccccCcc
Confidence 112356677666666554 2222 22222222222222 21 22223221111234677878774321110
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.......+...++ ++||++.+.. +.+|+.... ++++++++++++|.+++++.
T Consensus 395 ~~~~~~~i~~~~~-~~Gvl~~~~g-------~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 395 QERRGLKVYQHAL-ERGALLRPLG-------SVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred hhHHHHHHHHHHH-HCCeEEEecC-------CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 0011124555554 6799997631 368988665 79999999999999999886
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-12 Score=122.79 Aligned_cols=354 Identities=14% Similarity=0.166 Sum_probs=219.4
Q ss_pred CCceEEeecccccc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
.+-+|||-++.--- |.+...+++... -..|.......+|.+.+++.++ .+.++
T Consensus 40 ~dV~IDLrSDTgT~apS~~m~aAM~~G----------------DD~Y~gdpSv~~Lee~vael~G----------~E~al 93 (467)
T TIGR02617 40 EDVFIDLLTDSGTGAVTQSMQAAMMRG----------------DEAYSGSRSYYALAESVKNIFG----------YQYTI 93 (467)
T ss_pred CCeEEECccCCCCCCCCHHHHHHHHcC----------------CcccccCchHHHHHHHHHHHhC----------CceEE
Confidence 44568998876552 555555554431 1357766677999999999986 34578
Q ss_pred EeCChHHHHHHHHHHhcC-CCCeEEEcCC-------CCCC-hhhhcccCCCcEEEEEecC--------CCCCcccCHHHH
Q 037587 114 LTAGSTAANETLMFCLAD-PGDAFLLPTP-------YYPG-FDRDLKWRPGVEIVPIHCS--------SSNGFRITISAL 176 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~-~gd~Vlv~~p-------~y~~-~~~~~~~~~g~~~~~v~~~--------~~~~~~~d~~~l 176 (464)
.|..++.+-.+++..+++ +|+.+.+..+ .|.. ....+... |+.++.++.+ ......+|++.+
T Consensus 94 pthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~-G~~~~~l~~~ea~~~~~~~~fkG~~dl~~l 172 (467)
T TIGR02617 94 PTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQIN-GCTARNVYTKEAFDTGVRYDFKGNFDLEGL 172 (467)
T ss_pred ECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHc-CceeecccchhhcccccCCCCCCCcCHHHH
Confidence 888889999999999998 6777775443 2221 12234444 8887776432 112346899999
Q ss_pred HHHHHHHhhcCCceEEEEEeCCCC-CCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc--cccC---CCCCCccchhhhh
Q 037587 177 ENAYQQAQTLNLKVKGVLITNPSN-PLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG--TVFD---SPSSSFISIMEAV 250 (464)
Q Consensus 177 ~~~i~~~~~~~~~~~~vil~~P~N-PtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~--~~~~---~~~~~~~~~~~l~ 250 (464)
++.|++... .++..+.+.--+| --|+.+|.+.++++.++|++||+.++.|.+-.- -+|- .....-.++.++.
T Consensus 173 e~~I~~~g~--~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~ 250 (467)
T TIGR02617 173 ERGIEEVGP--NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQIT 250 (467)
T ss_pred HHHHhhcCC--CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHH
Confidence 999975311 1222222211123 357899999999999999999999999985531 0110 0000113555554
Q ss_pred hccCcCCCCCCCCcEEEEcCCCcCCCCC-ccEEEEEEecCH---HHHHHHHHh-------cccCCCChHHHHHHHHHcCC
Q 037587 251 MDRNIDESDDLWSRIHIVYSLSKDFSMP-GFRVGMIYSNNE---RVVSAATKM-------SSFGLVSSQTQYLLSRMLSD 319 (464)
Q Consensus 251 ~~~~~~~~~~~~~~vi~l~S~SK~~g~~-GlRiG~l~~~~~---~~~~~~~~~-------~~~~~~s~~~q~~~~~~l~~ 319 (464)
.++ ......+..|+||.+|.| | |+++++++ .+.+..+.. .+++..+.-...+++.-|.+
T Consensus 251 rE~-------~~~aDsvt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e 320 (467)
T TIGR02617 251 RET-------YKYADMLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_pred HHh-------hccCCEEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhh
Confidence 322 112334567999999876 5 67777777 333333322 23344555555565544554
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccc---ccCChhHHHHHHHHHHHhcCeEEe-CC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLL---VSNTFEAEKELWKKIIFEVGLNIS-PG 395 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~---~~~~~~~~~~l~~~ll~~~gI~v~-pg 395 (464)
.- -..+++.+.. ..++|.+.|.+.|+++.. .||.-++++....+ .... .....++..|..+.||--. -|
T Consensus 321 ~~-~~~yl~~ri~----qv~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~-fpa~al~~~ly~~~GiR~~e~G 393 (467)
T TIGR02617 321 GM-NLDWLAYRIN----QVQYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQ-FPAHALACELYKVAGIRAVEIG 393 (467)
T ss_pred cc-cHHHHHHHHH----HHHHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhh-CcHHHHHHHHHHHcCcceEeec
Confidence 31 1344554443 346678888889999988 78877888754431 1112 2334678888888898743 23
Q ss_pred CC-CCCC---------CCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhCc
Q 037587 396 SS-CHCN---------EPGWFRICFAN--ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 396 ~~-f~~~---------~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
+. ++.+ .-..+|+++.. -|.+.++...++|..+.++...
T Consensus 394 ~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~ 444 (467)
T TIGR02617 394 SLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPN 444 (467)
T ss_pred ceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhhh
Confidence 32 1110 02479999976 4889999999999998877663
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-11 Score=124.66 Aligned_cols=343 Identities=11% Similarity=0.117 Sum_probs=186.2
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++.+. ... ..+.. -..+....+|+.+.+...
T Consensus 33 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~----------~~~-~~~~~--~~~~~~~~lae~L~~~~p-- 97 (422)
T PRK05630 33 FLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDT----------MSH-VMFGG--LTHEPAIKLTRKLLNLTD-- 97 (422)
T ss_pred EEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHh----------CCC-cccCC--cCCHHHHHHHHHHHhhCC--
Confidence 4555567788998764 3333 346677776664321 111 11110 113444556666554321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCCc-------------EEEEEec
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPGV-------------EIVPIHC 163 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g~-------------~~~~v~~ 163 (464)
-..+.++++++++|++..+++.... ++ .+|+....+|++....+....+- .+..+|.
T Consensus 98 --~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~ 175 (422)
T PRK05630 98 --NGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPA 175 (422)
T ss_pred --CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCC
Confidence 1236899999999999999886421 22 57898888888753222111110 1122222
Q ss_pred CCCCCcccCHHHH---HHHHHHHhhcCCceEEEEEeC-CCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 164 SSSNGFRITISAL---ENAYQQAQTLNLKVKGVLITN-PSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 164 ~~~~~~~~d~~~l---~~~i~~~~~~~~~~~~vil~~-P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
... ...+.+.+ .+.+++... .++.+|++.- +..-.|.. .+.+.++++.++|+++|+++|.||++.+ |+.
T Consensus 176 ~~~--~~~~~~~~~~~~~~~~~~~~--~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG--~Gr 249 (422)
T PRK05630 176 PPV--RGSSPQEISEYLRSLELLID--ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATG--FGR 249 (422)
T ss_pred Ccc--cCCChHHHHHHHHHHHHHHh--hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeC--CCc
Confidence 110 01111122 222221111 2676666653 14556764 4667899999999999999999999976 432
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh--------cccCCCChHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM--------SSFGLVSSQT 309 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~--------~~~~~~s~~~ 309 (464)
.+ .... .+.. + ..+.++ +|+|.++ .| ..+|.++++ +.+.+.+... ...+..+++.
T Consensus 250 tG-~~~a-~~~~-g--------v~PDi~---t~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~h~~T~~g~Pla 313 (422)
T PRK05630 250 TG-ELFA-TLAA-G--------VTPDIM---CVGKALT-GGFMSFAATLCT-DKVAQLISTPNGGGALMHGPTFMANPLA 313 (422)
T ss_pred Cc-hhhH-HHhc-C--------CCCCee---eeechhh-cCccccceeecc-HHHHHHHhccCCCCccccCCCCcCCHHH
Confidence 21 1111 1111 1 112222 8899986 67 589999984 4455544321 1122355566
Q ss_pred HHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccCChhHHHHHHH
Q 037587 310 QYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWK 382 (464)
Q Consensus 310 q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~ 382 (464)
.+++.+.|+ +.++ .+ .+++.-+++.+.|+.+ .+.-... -|+++-+++..... ...+..
T Consensus 314 ~aaa~aaL~~l~~~~~-~~-------~~~~~g~~l~~~L~~l~~~~~v~~vRg-~Gl~~~ie~~~~~~------~~~~~~ 378 (422)
T PRK05630 314 CAVAHASLEIIETGMW-RK-------QVKRIEAELIAGLSPLAHLPGVADVRV-LGAIGVVEMEQPVD------MEEATQ 378 (422)
T ss_pred HHHHHHHHHHHHhCcH-HH-------HHHHHHHHHHHHHHHhhcCCCeeeeec-cccEEEEEECCccc------HHHHHH
Confidence 555555443 2222 12 2223333334433322 1111122 35688788753211 123555
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 383 KIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+ .++||++.+. .+.+||.... ++++++++++++|+++++..|
T Consensus 379 ~~-~~~Gl~~~~~-------g~~l~~~PpL~it~~~i~~~~~~l~~al~~~~ 422 (422)
T PRK05630 379 AA-VDHGVWLRPF-------GRLVYVMPPYITTSEQIAQICAALAAAVKAKQ 422 (422)
T ss_pred HH-HHCCeEEEec-------CCEEEEECCccCCHHHHHHHHHHHHHHHhccC
Confidence 55 4679999763 1478998876 799999999999999987643
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.7e-13 Score=136.90 Aligned_cols=169 Identities=14% Similarity=0.132 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..+..+.+|+.++ .....+++||+|.++..++.+++.+||.||++..||.+..+++... |+++++++...
T Consensus 197 i~eAe~~AA~~fg---------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLils-ga~PVYl~P~r 266 (714)
T PRK15400 197 HKEAEEYIARVFN---------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMS-DVTPIYFRPTR 266 (714)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeEEEecccc
Confidence 3566666666664 3456889999999999999999999999999999999888877766 99999987543
Q ss_pred CCCcc----cC-----HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-
Q 037587 166 SNGFR----IT-----ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV- 235 (464)
Q Consensus 166 ~~~~~----~d-----~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~- 235 (464)
+.|+ ++ .+.+++.+++... ..+++++++++| +..|.+++. +.|++.|..++ |++||||....
T Consensus 267 -n~~Gi~g~I~~~~~~~e~i~~~i~~~p~-ak~p~~~vit~p-TYdG~~yd~---~~I~~~~~~~~--ilvDEAwgah~~ 338 (714)
T PRK15400 267 -NAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNT---DFIKKTLDVKS--IHFDSAWVPYTN 338 (714)
T ss_pred -cccCCccCCCccccCHHHHHHHHHhCcc-ccCccEEEEECC-CCccEecCH---HHHHHHhCCCC--EEEEccchhhhc
Confidence 2332 24 7888888876321 123447999999 889999864 55666776666 68999998642
Q ss_pred cCCCCCCcc--chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEE
Q 037587 236 FDSPSSSFI--SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMI 285 (464)
Q Consensus 236 ~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l 285 (464)
|.+ .+. +.+...+ +..+.++++.|.+|.+ +|+.-+..
T Consensus 339 F~p---~~~~~sam~~ga--------~~~~~i~vtQStHKtL--~alTQaS~ 377 (714)
T PRK15400 339 FSP---IYEGKCGMSGGR--------VEGKVIYETQSTHKLL--AAFSQASM 377 (714)
T ss_pred cCc---ccCCcChhhcCC--------CCCCceEEEEchhhcc--cchhHHhH
Confidence 222 111 2211111 1225668899999997 66655544
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.5e-13 Score=137.46 Aligned_cols=174 Identities=18% Similarity=0.174 Sum_probs=119.3
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh-cccCCCcEEEEEecC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD-LKWRPGVEIVPIHCS 164 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~~g~~~~~v~~~ 164 (464)
..+..+.+|+.++ .....+++||+|.++..++.+++.+||.||++..||.+..+. +... |++++++...
T Consensus 176 i~eAq~~AA~~fg---------Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLs-Ga~PVYl~P~ 245 (720)
T PRK13578 176 AKDAQKHAAKVFN---------ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQA-GATPVYLETA 245 (720)
T ss_pred HHHHHHHHHHHhC---------CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHc-CCeEEEeecc
Confidence 4566666666665 345688999999999999999999999999999999988875 5555 9999998765
Q ss_pred CCCCcc----cCH-----HHHHHHHHHHh-h--cC-CceEEEEEeCCCCCCCCCCCHHHHHHHHHH-HhhCCeEEEEecc
Q 037587 165 SSNGFR----ITI-----SALENAYQQAQ-T--LN-LKVKGVLITNPSNPLGTAMTHQELNHLINF-SKSKRIHIVSDEI 230 (464)
Q Consensus 165 ~~~~~~----~d~-----~~l~~~i~~~~-~--~~-~~~~~vil~~P~NPtG~~~s~~~l~~i~~~-~~~~~~~lI~Dea 230 (464)
- +.|+ ++. +.+++++++.. . .. ...+++++++| +..|.+++ ++.|++. ++.++ .|++|||
T Consensus 246 ~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~yd---i~~I~~~~~h~~~-~llvDEA 319 (720)
T PRK13578 246 R-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYN---ARQVVDKIGHLCD-YILFDSA 319 (720)
T ss_pred c-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeec---HHHHHHHhhccCC-cEEEeCc
Confidence 3 2343 344 44888876531 1 01 12589999999 88999986 5566666 46667 8999999
Q ss_pred ccccc-cCCCCCCcc-chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEE
Q 037587 231 YSGTV-FDSPSSSFI-SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIY 286 (464)
Q Consensus 231 y~~~~-~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~ 286 (464)
|.... |.+.-..++ +..++-+ +.+.++++.|.+|.+ +++.-+..+
T Consensus 320 hgah~~F~p~~~~~p~~al~~Ga---------D~p~i~v~QStHKtL--~alTQaS~L 366 (720)
T PRK13578 320 WVGYEQFIPMMADCSPLLLELNE---------NDPGIFVTQSVHKQQ--AGFSQTSQI 366 (720)
T ss_pred chhhhccCcccccCChhhhhcCC---------CCCCeEEEEChhhcc--hhhhhHhhh
Confidence 97642 221100111 1112211 235678899999997 566655443
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-12 Score=122.21 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhccc---CCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKW---RPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~---~~g~~~~~v~~ 163 (464)
..+...+++..+ ..++++++++..++..++..|+.+|+.|+....+|.+....++. ..|++...+++
T Consensus 80 ~~le~~iaal~g----------a~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~ 149 (409)
T KOG0053|consen 80 DVLESGIAALEG----------AAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV 149 (409)
T ss_pred HHHHHHHHHHhC----------CceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence 455566666543 44588899999999999999999999999999999987766442 23777777665
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
+ +++.+++++++ ++++|++-+|.||+..+. +++++.++|+++|+++|+|+.++...+-
T Consensus 150 ~-------~~~~~~~~i~~------~t~~V~~ESPsNPll~v~---DI~~l~~la~~~g~~vvVDnTf~~p~~~------ 207 (409)
T KOG0053|consen 150 D-------DLKKILKAIKE------NTKAVFLESPSNPLLKVP---DIEKLARLAHKYGFLVVVDNTFGSPYNQ------ 207 (409)
T ss_pred h-------hHHHHHHhhcc------CceEEEEECCCCCccccc---cHHHHHHHHhhCCCEEEEeCCcCccccc------
Confidence 3 56777777764 799999999999999985 5777788888999999999999864222
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHH
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATK 298 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~ 298 (464)
....+ +..|+++|.+|.+| -.-+=.|.++.+...+...++.
T Consensus 208 -~pL~l-------------GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~ 249 (409)
T KOG0053|consen 208 -DPLPL-------------GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKF 249 (409)
T ss_pred -Chhhc-------------CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHH
Confidence 22223 45689999999995 3345567777754555444433
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=125.89 Aligned_cols=355 Identities=15% Similarity=0.134 Sum_probs=189.4
Q ss_pred CCCCCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+. ..+ ..|.+.++++++.+. ......+ .....+.+..+|+.+.+...
T Consensus 43 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----------~~~~~~~--~~~~~~~~~~lae~L~~~~p-- 108 (456)
T PRK07480 43 YLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRE----------LPYYNTF--FKTTHPPAIELAAKLAEVAP-- 108 (456)
T ss_pred EEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHh----------cCCcccc--cccCCHHHHHHHHHHHHhCC--
Confidence 44445567789987652 223 346677766664221 1111111 01224555666666654321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCCcE------------EEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPGVE------------IVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v~~~ 164 (464)
...+.++++++++|++..+++.... +| .+|+...-+|++.........|.. +..++.+
T Consensus 109 --~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p 186 (456)
T PRK07480 109 --PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQP 186 (456)
T ss_pred --CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCC
Confidence 2246899999999999999876421 22 468888888877532211111111 1111110
Q ss_pred C--CCCcccC--------HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 165 S--SNGFRIT--------ISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 165 ~--~~~~~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
. ...+..+ ++.+++.+.+ ....++.+|++.-...-.|.. .|.+.++++.++|+++|+++|.||++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG 264 (456)
T PRK07480 187 YWFGEGGDMTPEEFGLAAARQLEAKILE--LGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICG 264 (456)
T ss_pred cccccccCCChHHHHHHHHHHHHHHHHh--cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence 0 0000011 2444443322 112366666665334445664 4666799999999999999999999987
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc-EEEEEEecCHHHHHHHHH------hcccCCCC
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF-RVGMIYSNNERVVSAATK------MSSFGLVS 306 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl-RiG~l~~~~~~~~~~~~~------~~~~~~~s 306 (464)
|+..+ ..... +.. + ..+. +-+|+|.+| .|+ .+|.++++ +.+.+.+.. ....++.+
T Consensus 265 --fGRtG-~~~a~-~~~-g--------v~PD---iv~~gK~l~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~T~~gn 326 (456)
T PRK07480 265 --FGRTG-EWFGS-QHF-G--------IKPD---LMTIAKGLT-SGYIPMGAVGVG-DRVAEVLIEEGGEFNHGFTYSGH 326 (456)
T ss_pred --CCcCc-chhhh-hhc-C--------CCCC---eeeeehhhc-cCCccceEEEEc-HHHHHHHhcCCCCcccCCCCCcC
Confidence 43221 11111 111 1 1122 348899998 784 89999985 445554421 11123356
Q ss_pred hHHHHHHHHHcC---CchhhHHHH-HHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc-CCh---hH-H
Q 037587 307 SQTQYLLSRMLS---DKKFTCNYM-KENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS-NTF---EA-E 377 (464)
Q Consensus 307 ~~~q~~~~~~l~---~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~-~~~---~~-~ 377 (464)
+++.+++.+.|+ +.++ .+.. +++-+.+.+. +.+ +.++++......-|+++-+++...... ... .. .
T Consensus 327 pl~~Aaa~a~L~~l~~~~l-~~~~~~~~g~~l~~~---l~~-l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~ 401 (456)
T PRK07480 327 PVAAAVALANLRILRDEGI-VERVRDDTGPYLQKR---LRE-LADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVG 401 (456)
T ss_pred HHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHH---HHH-hhcCCCeeeEEeecceEEEEEeccccccccCcchhhHH
Confidence 777776666554 2222 1222 1222222222 222 333443211123356777777422110 000 01 1
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 378 KELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
..+...+ .++||++.+. .+.+|++... ++++++++++++|.+++.+.
T Consensus 402 ~~~~~~~-~~~Gll~~~~-------~~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 449 (456)
T PRK07480 402 TICRDHC-FANGLIMRAV-------GDRMIISPPLVITHAEIDELVEKARKALDAT 449 (456)
T ss_pred HHHHHHH-HHCCcEEeec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2344444 4679999752 1469999876 69999999999999998764
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-11 Score=124.33 Aligned_cols=356 Identities=12% Similarity=0.108 Sum_probs=193.1
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.++... ......+. ....+.+..+|+.+.+...
T Consensus 44 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----------~~~~~~~~--~~~~~~~~~lae~L~~~~p-- 109 (466)
T PRK07036 44 YVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARR----------LPYYTPFG--DMTNAPAAELAAKLAELAP-- 109 (466)
T ss_pred EEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHh----------Cccccccc--ccCCHHHHHHHHHHHHhCC--
Confidence 4444556778998755 2333 346677776664221 11111121 0124556667777764321
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc------C-C-CCeEEEcCCCCCChhhhcccCCCc------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA------D-P-GDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~ 164 (464)
-..+.+++++++++++..+++... . + ..+|+...-+|++....+....|. .+..++..
T Consensus 110 --~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p 187 (466)
T PRK07036 110 --GDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSP 187 (466)
T ss_pred --CCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCC
Confidence 123589999999999999988642 1 2 257888888887754332111111 12222221
Q ss_pred C--CCCcccC--------HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 165 S--SNGFRIT--------ISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 165 ~--~~~~~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
. ...+..+ ++.+++.+.. ....++.+|++.-...-.|.. .+.+.++++.++|++||+++|.||+..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tG 265 (466)
T PRK07036 188 NPYRRPAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTG 265 (466)
T ss_pred cccccccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC
Confidence 1 0011111 1233333321 122456666655335555664 5677899999999999999999999987
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh---------cccC
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM---------SSFG 303 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~---------~~~~ 303 (464)
|+..+ ......... + ..+. +-+++|.+| .| +.+|.++++ +.+.+.+... ...+
T Consensus 266 --fGRtG-~~~~~~~~~-g--------v~PD---ivt~gK~l~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~~T~ 328 (466)
T PRK07036 266 --FGRLG-HFFASEAVF-G--------IQPD---IITFAKGLT-SGYQPLGAVIIS-ERLLDVISGPNAKGNVFTHGFTY 328 (466)
T ss_pred --CCcCc-hhhhhhhhc-C--------CCCC---EEEEccccc-cCccccEEEEEc-HHHHHHHhcccCcCcccccCCCC
Confidence 43221 111111010 0 1122 347899998 88 599999985 4455544321 1112
Q ss_pred CCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccC-----Chh
Q 037587 304 LVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN-----TFE 375 (464)
Q Consensus 304 ~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~-----~~~ 375 (464)
..++++.+++.+.|+ +.+. .+..+++-+.+++. |. .+.++++......-|+++.+++....... ...
T Consensus 329 ~gnpl~~aaa~a~Le~i~~~~l-~~~~~~~g~~l~~~---L~-~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~ 403 (466)
T PRK07036 329 SGHPVACAAALKNIEIMEREGL-CEHVREVGPYFEER---LA-SLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIA 403 (466)
T ss_pred CCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHH---HH-HhccCCCEEEEEeeceEEEEEEccCccccCCCCchhH
Confidence 346666666665554 2222 22333333333332 21 23333332222244678888874321111 001
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 376 AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
....+...++ ++||++.+.. +.+|++... ++++++++++++|.+++++.
T Consensus 404 ~~~~~~~~~~-~~Gvl~~~~~-------~~~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 404 IGQRIDRHCQ-ERGLLVRPLE-------HLCVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred HHHHHHHHHH-HCCcEEeecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 1224555554 6799997631 358888765 69999999999999999775
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-11 Score=120.83 Aligned_cols=358 Identities=12% Similarity=0.053 Sum_probs=191.0
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.++++++... ....+. ..-..+.+..+|+.+.+....
T Consensus 51 ~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~------------~~~~~~-~~~~~~~~~~lAe~L~~~~p~- 116 (459)
T PRK06931 51 WVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTS------------GLPLHT-LDLTTPLKDAFSEYLLSLLPG- 116 (459)
T ss_pred EEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh------------hccccc-cccCCHHHHHHHHHHHHhCCC-
Confidence 4444556778999765 2323 346677766664211 010111 011245666677776543210
Q ss_pred CCCCC-CcE-EEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC------------cEEEEEecCCC--
Q 037587 105 VKFDP-NKL-VLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG------------VEIVPIHCSSS-- 166 (464)
Q Consensus 105 ~~~~~-~~i-~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~-- 166 (464)
... ..+ +++++++|++..+++... ....+|+...-+|++....+....| ..+..+|....
T Consensus 117 --~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (459)
T PRK06931 117 --QGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYR 194 (459)
T ss_pred --ccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCcccc
Confidence 011 134 556899999999888642 2346788888888776533221101 01222222110
Q ss_pred CCcc----cCHHHHHHHHHHHhh----cCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEecccccccc
Q 037587 167 NGFR----ITISALENAYQQAQT----LNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVF 236 (464)
Q Consensus 167 ~~~~----~d~~~l~~~i~~~~~----~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~ 236 (464)
..|. -+.+.+++.+++... ...++.+||+ -| ..-.|.. .+.+.++++.++|+++|+++|.||+..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~-EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGf-- 271 (459)
T PRK06931 195 CPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVIL-EAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGF-- 271 (459)
T ss_pred ccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEE-ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcC--
Confidence 0011 123334333332211 1234666555 45 3344654 56788999999999999999999999874
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHH
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLS 314 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~ 314 (464)
+..+ .+.. .+. + +..+. +-+++|.+| .|+.+|.+++. +.+ +.+.. ....+..++++.+++.
T Consensus 272 GRtG-~~~a-~~~---~------gv~PD---ivt~gK~l~-gG~Pi~av~~~-~~~-~~~~~~~~~~T~~gnpla~aaal 334 (459)
T PRK06931 272 ARTG-KMFA-FEH---A------GIEPD---IIVMSKAVG-GGLPLAVLGIK-KEF-DAWQPGGHTGTFRGNQLAMATGL 334 (459)
T ss_pred CcCc-hHHH-hhh---c------CCCCC---EEEeccccc-CCcceeeeeeH-HHH-hhccCCCCCCCCCCCHHHHHHHH
Confidence 3221 1111 111 1 01123 347899998 89999988774 333 33321 1122235677766666
Q ss_pred HHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc-------C-ChhHHHHHHHH
Q 037587 315 RMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS-------N-TFEAEKELWKK 383 (464)
Q Consensus 315 ~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~-------~-~~~~~~~l~~~ 383 (464)
+.|+ +.+. .++.+++-+.+++. |.+..+++++....-.-|+++.+++...... . +......+...
T Consensus 335 a~L~~l~~~~l-~~~~~~~G~~l~~~---L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
T PRK06931 335 TTLKILKEENL-AQNAAERGEWLKAQ---LAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKA 410 (459)
T ss_pred HHHHHHHhCCH-HHHHHHHHHHHHHH---HHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHH
Confidence 6554 3232 23333333333332 3332233443222223467777877432110 0 11112345555
Q ss_pred HHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 384 IIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
++ ++||++.++... .+.+|+..+. ++++++++++++|.+++.+
T Consensus 411 ~~-~~Gvl~~~~~~~----~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 411 CF-ENGLLLERGGRN----GNVVRLLPPLLITQAECEEFIDRFEQALLA 454 (459)
T ss_pred HH-HCCcEEeecCCC----CCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence 54 679999865321 3579988876 7999999999999999875
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-12 Score=130.69 Aligned_cols=171 Identities=14% Similarity=0.086 Sum_probs=116.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..+..+.+|+.++ .....+++||+|.++..++.+++.+||.||++..||.+..+.+... |+++++++...
T Consensus 197 i~eAe~~aA~~fg---------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLils-ga~PVYl~P~~ 266 (713)
T PRK15399 197 HLEAEEYIARTFG---------AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMS-DVVPIWLKPTR 266 (713)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeeEEecccc
Confidence 3556666666664 3456889999999999999999999999999999999888877766 99999987543
Q ss_pred CCCcc----cCH-----HHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEE-EEeccccccc
Q 037587 166 SNGFR----ITI-----SALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHI-VSDEIYSGTV 235 (464)
Q Consensus 166 ~~~~~----~d~-----~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~l-I~Deay~~~~ 235 (464)
+.|+ ++. +.+++.+++... ..+++++++++| +..|.+++.+. |++.| |+.+ ++||||....
T Consensus 267 -n~~Gi~g~I~~~~~~~e~I~~~i~~~p~-~~~p~~vvit~p-TYdGi~yd~~~---I~~~~---g~~~ilvDEAhgah~ 337 (713)
T PRK15399 267 -NALGILGGIPRREFTRDSIEEKVAATTQ-AQWPVHAVITNS-TYDGLLYNTDW---IKQTL---DVPSIHFDSAWVPYT 337 (713)
T ss_pred -cccCCcCCCChhhccHHHHHHHHHhCCC-cCCceEEEEECC-CCCceeeCHHH---HHHHh---CCCEEEEeccchhhh
Confidence 2333 344 888888876421 134578999999 88999987555 55555 4444 6999998642
Q ss_pred -cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEE
Q 037587 236 -FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIY 286 (464)
Q Consensus 236 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~ 286 (464)
|.+.- +..+.+.... .....++++.|.+|.+ +|+.-+..+
T Consensus 338 ~F~p~~-~~~sam~~~~--------~aD~~i~~tQStHKtL--~alTQaS~i 378 (713)
T PRK15399 338 HFHPIY-QGKSGMSGER--------VPGKVIFETQSTHKML--AAFSQASLI 378 (713)
T ss_pred hcCccc-CCcChhhCCC--------CCCeeeeeeeehhccc--cccchheee
Confidence 22210 0012211110 1224566789999997 666655543
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=125.02 Aligned_cols=281 Identities=18% Similarity=0.150 Sum_probs=160.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCCcE-------------EEEEecCCCC
Q 037587 109 PNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPGVE-------------IVPIHCSSSN 167 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g~~-------------~~~v~~~~~~ 167 (464)
-+.+++++++++++..+++.... +| .+|+...-+|.+....+....+.. +..++.. ..
T Consensus 105 ~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~ 183 (427)
T TIGR00508 105 LDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QN 183 (427)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-Cc
Confidence 36899999999999988886431 23 578888888887543222111210 1111111 01
Q ss_pred Ccc-----cCHHHHHHHHHHHhhcCCceEEEEEeCC--CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 168 GFR-----ITISALENAYQQAQTLNLKVKGVLITNP--SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 168 ~~~-----~d~~~l~~~i~~~~~~~~~~~~vil~~P--~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
.+. -|++++++.+.. ...++.+|++. | .+-.|. ..+.+.++++.++|+++|+++|+||++.++...+.
T Consensus 184 ~~~~~~~~~~~~~l~~~l~~---~~~~vaavivE-Pv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~ 259 (427)
T TIGR00508 184 RFDEEWNEEAITPLAKLMEL---HSDEIAAVILE-PIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK 259 (427)
T ss_pred cccchhHHHHHHHHHHHHHh---cCCcEEEEEEe-chhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc
Confidence 111 134566666543 22356555554 5 444455 45789999999999999999999999976322222
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc-EEEEEEecCHHHHHHHHHh-------cccCCCChHHHH
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF-RVGMIYSNNERVVSAATKM-------SSFGLVSSQTQY 311 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl-RiG~l~~~~~~~~~~~~~~-------~~~~~~s~~~q~ 311 (464)
.+.. +.. + ..+.++ +++|.++ .|+ .++.+++ ++.+.+.+... ...+..++++.+
T Consensus 260 --~~~~--~~~-~--------v~pDi~---~~gK~l~-gG~~p~~a~~~-~~~~~~~~~~~~~~~~~~~~T~~g~p~~~a 321 (427)
T TIGR00508 260 --LFAC--EHA-G--------VVPDIL---CVGKALT-GGYMTLSATVT-TDKVAQTISSGEAGCFMHGPTFMGNPLACA 321 (427)
T ss_pred --cchh--hhc-C--------CCCCEE---Eechhhh-cCcccceEEEE-cHHHHHHHhcCCCCccccCCCCCcCHHHHH
Confidence 1111 111 1 112222 4899997 784 6787777 44555555421 111224666666
Q ss_pred HHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-eeec--CCccEEEEEecCcccccCChhHHHHHHHHHHHhc
Q 037587 312 LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI-RCLK--SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEV 388 (464)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~--~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~ 388 (464)
++.+.|+--. + +...+.++++-++|.+.|++++. .... ..-|.++.+.+.... ....+...++ ++
T Consensus 322 aa~a~l~~l~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~------~~~~~~~~l~-~~ 389 (427)
T TIGR00508 322 VAEASLAILL---E--GEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV------NVEELQKKFV-EQ 389 (427)
T ss_pred HHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc------CHHHHHHHHH-HC
Confidence 6666554211 0 01233444455556666655421 1111 112556777774211 1124666665 67
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 389 GLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 389 gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
||++.+.. ..+|++... +++++++++++++++++.+
T Consensus 390 Gv~~~~~~-------~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 390 GVWIRPFG-------KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred CeEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 99997532 368998875 6899999999999998864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-11 Score=122.70 Aligned_cols=292 Identities=11% Similarity=0.031 Sum_probs=191.4
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCC--cEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPN--KLVLTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
+..++.+.+-+++.+.++ .+++ .=++|+|+|+++..++.+..+ +...+++++-+|..+..++..+ |++++.
T Consensus 130 ~s~~~E~~Vi~wla~L~g----~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~ll-gi~~~~ 204 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWE----IEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMECVK 204 (470)
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhc-CCcceE
Confidence 457888889999988876 3332 357899999999998877533 3347888898998899888877 999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCe-----EEEEeccccccc
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI-----HIVSDEIYSGTV 235 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~-----~lI~Deay~~~~ 235 (464)
+|++ .++.+|+++|+++|.+. ..++-+|+.+-+..++|.+ +++++|.++|+++|+ |+.+|.+|+++.
T Consensus 205 Vp~d--~~g~mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~ 276 (470)
T PLN02263 205 VDTL--VSGEIDCADFKAKLLAN---KDKPAIINVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLM 276 (470)
T ss_pred eccC--CCCcCcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhH
Confidence 9986 46789999999998752 1235556667778999999 678888888989886 999999998764
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc-------CCCCh-
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF-------GLVSS- 307 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~-------~~~s~- 307 (464)
..... ..+. ... .....-+..+.+|.++ ....+|.++.+++.+ ..+.....| ...+.
T Consensus 277 lPf~~-~~~~-~df-----------~~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~-~~~~~~~~Yl~~~d~ti~gSR~ 341 (470)
T PLN02263 277 MPFVK-RAPK-VTF-----------KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRN 341 (470)
T ss_pred hhhcc-cccc-cCC-----------CcCccEEEECCccccC-CCcCEEEEEEehhhH-hhhccChHhhCCCCCCcCCCCC
Confidence 31110 0000 111 1123334569999987 777899999865433 222111111 01111
Q ss_pred ----HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cCCccEEEEEecCcccccCChhHHHHHHH
Q 037587 308 ----QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL-KSNAGLFCWVDMRHLLVSNTFEAEKELWK 382 (464)
Q Consensus 308 ----~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~ 382 (464)
+...+....+. .+-+++..+..-+..+++.+.|++.|+... .|..+ .+.+..|. .
T Consensus 342 g~~al~lW~~L~~~G-----~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~-~V~f~~p~--------------~ 401 (470)
T PLN02263 342 GHAPIFLWYTLNRKG-----YRGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSS-TVVFERPK--------------D 401 (470)
T ss_pred cHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCce-EEEEecCc--------------h
Confidence 22222222222 233455555666677888899988887654 44544 44454331 0
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 383 KIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
... .+|..+.. .++.++|++.. ++.+.++++++.|++.....
T Consensus 402 ~~~-~~gW~L~~-------~~~~~Hivvmphv~~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 402 EEF-VRRWQLAC-------QGNIAHVVVMPSVTIEKLDYFLKELVEKRSTW 444 (470)
T ss_pred HHh-hcceEEcc-------CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence 011 24666653 13469999976 68899999999998877644
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.1e-14 Score=132.30 Aligned_cols=189 Identities=15% Similarity=0.225 Sum_probs=130.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh--cccCCCc
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD--LKWRPGV 156 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--~~~~~g~ 156 (464)
.|.......+|.+.+++.++ .+..+++.+++.+..++++++++|++.|++..++|....+. .....|+
T Consensus 24 ~Yg~D~~~~~l~~~i~~l~g----------~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~G~ 93 (290)
T PF01212_consen 24 AYGEDPTTARLEERIAELFG----------KEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEELSGA 93 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHHTTC
T ss_pred ccCCChhHHHHHHHHHHHcC----------CCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHhcCc
Confidence 57665556777777777775 34567899999999999999999999999999976422222 2223499
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL-GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPt-G~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
++++++.+. +..+++++|++.+........++++|++++|+|-. |.++|.+++++|.++|+++|+.++.|.+-....
T Consensus 94 ~~~~l~~~~--~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a 171 (290)
T PF01212_consen 94 KLIPLPSDD--DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANA 171 (290)
T ss_dssp EEEEEBECT--GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHH
T ss_pred EEEECCCcc--cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHh
Confidence 999998653 25689999999998865444689999999998864 899999999999999999999999999863110
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHH
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA 295 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~ 295 (464)
... .-.++.++.. ....+.-|++|..|+++ -+.++++++.+.+.
T Consensus 172 ~~~---~~~~~~e~~~-----------~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~ 215 (290)
T PF01212_consen 172 AAA---LGVSLAEIAA-----------GADSVSFGGTKNGGAPG--GAVLAGNKEFIAKA 215 (290)
T ss_dssp HCH---HHHHHHHHHT-----------TSSEEEEETTSTT-SSS--EEEEEESHHHHHHH
T ss_pred hhc---ccccHHHHhh-----------hCCEEEEEEEccccccc--ceEEEechHHHHHH
Confidence 100 0123344433 23355669999998765 24555654434443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-11 Score=126.28 Aligned_cols=318 Identities=14% Similarity=0.174 Sum_probs=187.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCC--------CCC-CCCcEEEeCChHHHHHHHHHHhc----C---------------
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNK--------VKF-DPNKLVLTAGSTAANETLMFCLA----D--------------- 131 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~--------~~~-~~~~i~it~G~~~al~~~~~~l~----~--------------- 131 (464)
+.......++.+.+.+++.+..+.. ... +..--++|+|+|+++..++.+.. .
T Consensus 121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~ 200 (522)
T TIGR03799 121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFA 200 (522)
T ss_pred eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchh
Confidence 3334455788888888887764210 000 11235789999999888776531 1
Q ss_pred -------CCCeEEEcCCCCCChhhhcccCCCc---EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCC
Q 037587 132 -------PGDAFLLPTPYYPGFDRDLKWRPGV---EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201 (464)
Q Consensus 132 -------~gd~Vlv~~p~y~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NP 201 (464)
++..|++.+-.|......+..+ |+ +++.+|++. ++.+|+++|++.+++..+.+.++-+|+-+..++.
T Consensus 201 ~~~~~~~~~~~v~~S~~~H~S~~kaa~~l-glg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~ 277 (522)
T TIGR03799 201 ALKHYGYDGLAILVSERGHYSLGKAADVL-GIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTE 277 (522)
T ss_pred hhhhccCCceEEEECCCchHHHHHHHHHc-CCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcC
Confidence 1346888888888888777766 77 788999874 5689999999999865544444444444455779
Q ss_pred CCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccE
Q 037587 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR 281 (464)
Q Consensus 202 tG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlR 281 (464)
||.+- .+++|+++|+++|+++.+|.+|+....-.. ....++..+ .....+..|.+|.++ ....
T Consensus 278 tGaiD---pl~eIa~i~~~~g~~lHVDaA~gg~~~~~~-----~~r~~l~gl--------e~aDSit~d~HK~l~-~P~g 340 (522)
T TIGR03799 278 TGNID---PLDEMADIAQELGCHFHVDAAWGGATLLSN-----TYRHLLKGI--------ERADSVTIDAHKQLY-VPMG 340 (522)
T ss_pred CCCcC---CHHHHHHHHHHcCCeEEEEchhhhHHHhCH-----HHHHHhcCc--------hhCCEEEEChhhcCC-cCcc
Confidence 99995 577788999999999999999986432211 111222211 133456779999765 4456
Q ss_pred EEEEEecCHHHHHHHHHhccc---------------CCCCh--HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037587 282 VGMIYSNNERVVSAATKMSSF---------------GLVSS--QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344 (464)
Q Consensus 282 iG~l~~~~~~~~~~~~~~~~~---------------~~~s~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (464)
+|.++.+++.+.+.+.....| .+-+. +...++...+. .+-+++..+...+..+++.+.
T Consensus 341 ~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG-----~~G~~~ii~~~~~la~~l~~~ 415 (522)
T TIGR03799 341 AGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIG-----RKGYELLIDQSIEKAKYFADL 415 (522)
T ss_pred cEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 899988665544333221111 01111 11222223332 233556666667777888888
Q ss_pred HHhC-CCeeec-CCccEEEEEec-CcccccC----------C----hhH-HHHHHHHHHHhcCeEEeC-CC----CCCCC
Q 037587 345 LKVA-GIRCLK-SNAGLFCWVDM-RHLLVSN----------T----FEA-EKELWKKIIFEVGLNISP-GS----SCHCN 401 (464)
Q Consensus 345 l~~~-g~~~~~-~~~g~f~~~~l-~~~~~~~----------~----~~~-~~~l~~~ll~~~gI~v~p-g~----~f~~~ 401 (464)
|.+. ++++.. ++-+ .+.+++ |...... . .+. ..++.+++. +.|..... .. .+...
T Consensus 416 L~~~~~~el~~~p~l~-iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~-~~G~~~vs~t~l~~~~~~g~ 493 (522)
T TIGR03799 416 IQQQPDFELVTEPELC-LLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQR-EAGKSFVSRTRLTPAQYDHQ 493 (522)
T ss_pred HhhCCCeEEecCCCcc-EEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHH-hcCCEEEEEEEecccccCCC
Confidence 8876 787764 4455 444443 3221110 0 000 123444443 44655432 22 12111
Q ss_pred CCCeEEEEeec--CCHHHHHHHHHH
Q 037587 402 EPGWFRICFAN--ITEETLQVALQR 424 (464)
Q Consensus 402 ~~~~~Ris~~~--~~~e~l~~~l~~ 424 (464)
+...||+++.+ .++++++.+++.
T Consensus 494 ~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 494 PTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred CcEEEEEEecCCCCCHHHHHHHHHH
Confidence 22469999977 467888876653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-11 Score=122.23 Aligned_cols=339 Identities=9% Similarity=0.094 Sum_probs=174.2
Q ss_pred CCCCCCCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 27 NPYDQLHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 27 ~~y~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
..|..+.+...+||+..+. +.+ ..|.+.+++.++.+ ....|.. ....+..+|+.+.+...
T Consensus 39 G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-------------~~~~~~~---~~~~~~~la~~l~~~~p 102 (431)
T PRK06209 39 GAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQ-------------DGCNFTR---PSAIELDAAESFLELID 102 (431)
T ss_pred CCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHH-------------hCcCCCC---CCHHHHHHHHHHHHhCC
Confidence 3455566677889997652 334 34677777766532 1222321 13333345555543221
Q ss_pred CCCCCCCCcEEEeCChHHHHHHHHHHhcC-CC-CeEEEc-CCCCCChhhh----cccCCCcE--E--EEEecCCCCCccc
Q 037587 103 NKVKFDPNKLVLTAGSTAANETLMFCLAD-PG-DAFLLP-TPYYPGFDRD----LKWRPGVE--I--VPIHCSSSNGFRI 171 (464)
Q Consensus 103 ~~~~~~~~~i~it~G~~~al~~~~~~l~~-~g-d~Vlv~-~p~y~~~~~~----~~~~~g~~--~--~~v~~~~~~~~~~ 171 (464)
..+.++++++++|++..+++.... .| ..|+.. .-+|.++... .....|.. . ...... + -
T Consensus 103 -----~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~-~ 172 (431)
T PRK06209 103 -----GADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR----Y-N 172 (431)
T ss_pred -----ccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC----C-C
Confidence 136899999999999999886421 23 345544 2233221100 00000110 0 011111 1 2
Q ss_pred CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhh
Q 037587 172 TISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVM 251 (464)
Q Consensus 172 d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~ 251 (464)
|++.+++.+++ ...++.+|++ .|- .|...+.+.+++|.++|+++|+++|+||++.++.+... .......+
T Consensus 173 d~~~l~~~l~~---~~~~~aavi~-Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~--g~~~~~gv-- 242 (431)
T PRK06209 173 DIASLEALFED---HPGRIACVIL-EPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMR--GAQKLYGI-- 242 (431)
T ss_pred CHHHHHHHHHh---CCCCEEEEEE-ccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcc--hhhHHhCC--
Confidence 68888888764 1224555444 452 34466788999999999999999999999976422111 00111111
Q ss_pred ccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHH--HHH---h-----cccCCCChHHHHHHHHHcC---
Q 037587 252 DRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA--ATK---M-----SSFGLVSSQTQYLLSRMLS--- 318 (464)
Q Consensus 252 ~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~--~~~---~-----~~~~~~s~~~q~~~~~~l~--- 318 (464)
.+. +.+++|.+| .|+.+|.++++ +.+.+. +.. . ...++.+++..+++.+.|+
T Consensus 243 ----------~PD---i~t~gK~lg-gG~p~~av~~~-~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~ 307 (431)
T PRK06209 243 ----------VPD---LSCFGKALG-NGFAVSALAGK-REYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYR 307 (431)
T ss_pred ----------Ccc---eeeehhhhc-CCcccEEEEEH-HHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHh
Confidence 112 468999998 78999999994 445443 210 1 1112234444444444433
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cCCccEEEEEecCcccc-cCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL-KSNAGLFCWVDMRHLLV-SNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~f~~~~l~~~~~-~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
+.+. .++.++.-+..++.+.+...++++... ...+.++.+.-+..... .....-...+...++ ++||++.|
T Consensus 308 ~~~~----~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~p~-- 380 (431)
T PRK06209 308 DEDV----IERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETI-RRGVLMPS-- 380 (431)
T ss_pred ccCH----HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHH-HCCccccc--
Confidence 3322 222222222233333333333454321 22232222221111111 111111114556655 57997621
Q ss_pred CCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 397 SCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 397 ~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++|+.. .+++++++++++|.++++...
T Consensus 381 ---------l~is~~-ht~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 381 ---------LVVSYA-HGDADIERTIDAVHGALGVYR 407 (431)
T ss_pred ---------cccccc-CCHHHHHHHHHHHHHHHHHHH
Confidence 466643 589999999999999988764
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-12 Score=119.29 Aligned_cols=296 Identities=16% Similarity=0.180 Sum_probs=184.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
...|.+.||..-+- ---+.+++++.++..++..++++||.|+...--|++.... ++.+ |+++..+
T Consensus 64 ~~vlE~RiAaLEGG----------~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~-Gi~v~fv 132 (426)
T COG2873 64 TDVLEERIAALEGG----------VAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRL-GIEVRFV 132 (426)
T ss_pred HHHHHHHHHHhhcc----------hhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhc-CcEEEEe
Confidence 47788888887641 1235678889999999999999999999988888775443 4556 9999988
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++.+++++++ ++|+|++-.-.||-+.+. ++++|.++|+++|+++|+|..+..-++-.+
T Consensus 133 d~~-------d~~~~~~aI~~------nTkavf~EtigNP~~~v~---Die~ia~iAh~~gvpliVDNT~atpyl~rP-- 194 (426)
T COG2873 133 DPD-------DPENFEAAIDE------NTKAVFAETIGNPGLDVL---DIEAIAEIAHRHGVPLIVDNTFATPYLCRP-- 194 (426)
T ss_pred CCC-------CHHHHHHHhCc------ccceEEEEeccCCCcccc---CHHHHHHHHHHcCCcEEEecCCCcceecch--
Confidence 743 68999999986 999999999999999996 588899999999999999998764322211
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHH-HHhcc-------cC--------CC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA-TKMSS-------FG--------LV 305 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~-~~~~~-------~~--------~~ 305 (464)
+ ..+-.|+++|++|..|=.|--+|-++.......... .++.. +. ..
T Consensus 195 -------~-----------~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~ 256 (426)
T COG2873 195 -------I-----------EHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGN 256 (426)
T ss_pred -------h-----------hcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhccc
Confidence 1 225668899999999878888888776432221110 01000 00 00
Q ss_pred ChHHHHHHHHHcCCc--------hhh----HHHHHHHHHHHHHHHHHHHHHHHhC-CCe------------------eec
Q 037587 306 SSQTQYLLSRMLSDK--------KFT----CNYMKENRKRLRKRKEMLVSGLKVA-GIR------------------CLK 354 (464)
Q Consensus 306 s~~~q~~~~~~l~~~--------~~~----~~~~~~~~~~~~~~~~~l~~~l~~~-g~~------------------~~~ 354 (464)
..+...+-...|+|- .|+ .+-+.-+.++..++...+.+.|+++ .+. +.+
T Consensus 257 ~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~ 336 (426)
T COG2873 257 AAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLP 336 (426)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhcc
Confidence 011111111222221 010 1123334556666777788888876 221 222
Q ss_pred CCccEEEEEecCccccc-CChhHHHHHHHHHHH---hcCeEEeCCCCCCCC-----------CCCeEEEEeecCCHHHHH
Q 037587 355 SNAGLFCWVDMRHLLVS-NTFEAEKELWKKIIF---EVGLNISPGSSCHCN-----------EPGWFRICFANITEETLQ 419 (464)
Q Consensus 355 ~~~g~f~~~~l~~~~~~-~~~~~~~~l~~~ll~---~~gI~v~pg~~f~~~-----------~~~~~Ris~~~~~~e~l~ 419 (464)
...|-.+.+.+...... ..+.+..+++..+.. -+-+.|-|.+--+.. .++.+|+|++. |+++
T Consensus 337 ~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI---Ed~~ 413 (426)
T COG2873 337 KGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI---EDID 413 (426)
T ss_pred CCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc---CCHH
Confidence 23344566666543211 222334444444321 112445566544321 25789999995 5566
Q ss_pred HHHHHHHHHHHh
Q 037587 420 VALQRIKVFAQS 431 (464)
Q Consensus 420 ~~l~~l~~~l~~ 431 (464)
.++.-|++++++
T Consensus 414 DiiaDl~qAl~~ 425 (426)
T COG2873 414 DIIADLEQALEA 425 (426)
T ss_pred HHHHHHHHHHhc
Confidence 677777776653
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-12 Score=125.65 Aligned_cols=282 Identities=12% Similarity=0.080 Sum_probs=166.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCC-CCcEEEe-CChHHHHHHHHHHhcCCCCeEEEcCCCCCCh-hhhccc--CCCcEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFD-PNKLVLT-AGSTAANETLMFCLADPGDAFLLPTPYYPGF-DRDLKW--RPGVEIVP 160 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~-~~~i~it-~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~-~~~~~~--~~g~~~~~ 160 (464)
..+.|+.++++++ ++ ..+|+++ +++|.+++.++..++.+ +.+++..-.|+.- ...+.. + +.++..
T Consensus 43 ~~~~r~~l~~l~~--------~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~-~~~~~~ 112 (361)
T TIGR01366 43 VGRVREGLAELFS--------LPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPW-LGEPII 112 (361)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhc-cCCceE
Confidence 4566777777775 43 3478886 55999999999998743 3333333334322 222222 1 225555
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+. +..++.+ + .+++++|.+++-+|.||...|.+++ ++++|+++|+|.+.+ ++..
T Consensus 113 ~~~~~--~~~~~~~-----~------~~~~~lV~~~h~et~tG~~~pi~~I------~~~~g~~~iVDavqs---~g~~- 169 (361)
T TIGR01366 113 VTADP--GSAPEPQ-----A------DPGVDVIAWAHNETSTGVAVPVRRP------EGSDDALVVIDATSG---AGGL- 169 (361)
T ss_pred EecCC--CCCCCCc-----c------CCCCCEEEEcccCCccceecccccc------cccCCCeEEEEcCcc---ccCC-
Confidence 55442 1122221 1 2488999999999999999986553 467899999999997 4443
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh---------------------
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--------------------- 299 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--------------------- 299 (464)
+ .++. ...+++.|-.|.+|.+|- ++.++.+++.+.+ +...
T Consensus 170 -~-idv~---------------~~D~~~~s~~K~lg~~~G-l~~~~~s~~~~~~-~~~~~~~~~~~p~~~d~~~~~~~~~ 230 (361)
T TIGR01366 170 -P-VDIA---------------ETDVYYFAPQKNFASDGG-LWLAIMSPAALER-IEAIAASGRWVPEFLSLPTAVDNSL 230 (361)
T ss_pred -C-CCHH---------------HCCEEEEEchhhcCCCCc-eEEEEECHHHHhh-hhcccCCCCCCchhhhHHHHHhccc
Confidence 1 2221 134578999999987752 5555664443322 2110
Q ss_pred --cccCCCChHHHHHHHHHcCCchhhHH--HHHHHHHHHHHHHHHHHHHHHhCC-CeeecC-C---ccEEEEEecCcccc
Q 037587 300 --SSFGLVSSQTQYLLSRMLSDKKFTCN--YMKENRKRLRKRKEMLVSGLKVAG-IRCLKS-N---AGLFCWVDMRHLLV 370 (464)
Q Consensus 300 --~~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-~---~g~f~~~~l~~~~~ 370 (464)
..+++++.....++.++++. +.+ -++...++.++..+++.+.+.+.+ ++++.. . ......+.+++..+
T Consensus 231 ~~~t~~tp~i~~i~~l~~al~~---l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~ 307 (361)
T TIGR01366 231 KNQTYNTPAIATLALLAEQIDW---MNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDID 307 (361)
T ss_pred cCCCCCCchHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccC
Confidence 01122222222233333332 111 145555777788888898888886 454421 1 11112233433221
Q ss_pred cCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 371 SNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 371 ~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
..++...| +++||.+.++.. ....+.||||+.. .++++++.++++|++++++
T Consensus 308 ------~~~v~~~L-~~~gI~i~~~~~--~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 308 ------AATVAKIL-RANGIVDTEPYR--KLGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred ------HHHHHHHH-HHCCCeeccCcc--ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 22355555 677999987642 2235689999977 8999999999999998775
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-12 Score=125.57 Aligned_cols=297 Identities=17% Similarity=0.162 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC------hhhhcccCCCcEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG------FDRDLKWRPGVEIVP 160 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~------~~~~~~~~~g~~~~~ 160 (464)
..+++.+|++++ .+..+++++++.++.+++.++ .+||.|+++...+.. +...+... |++++.
T Consensus 130 ~~~e~~lA~l~G----------ae~a~vv~sgtaAl~l~l~~l-~~GdeVIvs~~e~~~~ggs~~i~~~~~~~-G~~l~~ 197 (464)
T PRK04311 130 RALAALLCALTG----------AEDALVVNNNAAAVLLALNAL-AAGKEVIVSRGELVEIGGAFRIPDVMRQA-GARLVE 197 (464)
T ss_pred HHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHh-CCCCEEEEcchhhhhcCcchhhHHHHHHC-CcEEEE
Confidence 577777887764 235677888889999888664 789999998764431 12234445 999998
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCC--CCCCCCHHHHHHHHHHHhhCCeEEEEecccccc----
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP--LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT---- 234 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NP--tG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~---- 234 (464)
++.+. ..+++++++++.+ ++++|++.+++|| +|.. ...++++|+++|+++|+++|+|.+.+.+
T Consensus 198 v~~~~----~t~~~dle~aI~~------~TklV~~vh~sN~~i~G~~-~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~ 266 (464)
T PRK04311 198 VGTTN----RTHLRDYEQAINE------NTALLLKVHTSNYRIEGFT-KEVSLAELAALGKEHGLPVVYDLGSGSLVDLS 266 (464)
T ss_pred ECCCC----CCCHHHHHHhcCc------cCeEEEEEcCCCccccccC-CcCCHHHHHHHHHHcCCeEEEECCCcccccch
Confidence 87542 2468888888865 7899999999998 4532 1135888999999999999999964321
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHH
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYL 312 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~ 312 (464)
.|+-. ..+.+.... ..+..+++.|.+|.+|-+ ..|+++++++ +.+.+++. .....+......+
T Consensus 267 ~~gl~--~~p~~~~~l----------~~GaDiv~fSg~K~LgGp--~~G~i~g~~~-li~~l~~~~~~r~lr~dk~~l~~ 331 (464)
T PRK04311 267 QYGLP--DEPTVQELL----------AAGVDLVTFSGDKLLGGP--QAGIIVGKKE-LIARLKKHPLKRALRVDKLTLAA 331 (464)
T ss_pred hccCC--CCCchhhHH----------hcCCcEEEecCcccccCC--ceEEEEEcHH-HHHHHhhchhHHHHhcchHHHHH
Confidence 11100 011221211 125678899999998623 5899998544 44434321 1111122222333
Q ss_pred HHHHcC---Cch--h----hHHHHHHHHHHHHHHHHHHHHHHHhCC-----CeeecC----CccEEEEEecCcc---ccc
Q 037587 313 LSRMLS---DKK--F----TCNYMKENRKRLRKRKEMLVSGLKVAG-----IRCLKS----NAGLFCWVDMRHL---LVS 371 (464)
Q Consensus 313 ~~~~l~---~~~--~----~~~~~~~~~~~~~~~~~~l~~~l~~~g-----~~~~~~----~~g~f~~~~l~~~---~~~ 371 (464)
+.+.+. ++. + ..+.+....+.+.++...+.+.|+.+. +.+.+. .||-+--..+|.. ...
T Consensus 332 l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~ 411 (464)
T PRK04311 332 LEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTP 411 (464)
T ss_pred HHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeC
Confidence 332222 111 1 011233334666777888888887752 233322 1221111111111 000
Q ss_pred CChhHHHHHHHHHHHhcC--eEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 372 NTFEAEKELWKKIIFEVG--LNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 372 ~~~~~~~~l~~~ll~~~g--I~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.. ....++... |++.. |..+ -.++.+.+-+.++.+++++.++++|.+++.
T Consensus 412 ~~-~~~~~l~~~-lr~~~~~i~~r-------~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 412 KD-RSLEALAAR-LRLLPPPVIGR-------IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred CC-CCHHHHHHH-HhcCCCCEEEE-------EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 01 112234443 45533 4443 236778899988889999999999998764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-11 Score=125.33 Aligned_cols=318 Identities=15% Similarity=0.175 Sum_probs=187.7
Q ss_pred cccccCCC---CCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh----cCC----CCeEEEcCCCC
Q 037587 75 RELALFQD---YHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL----ADP----GDAFLLPTPYY 143 (464)
Q Consensus 75 ~~~~~Y~~---~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l----~~~----gd~Vlv~~p~y 143 (464)
.+.+-|.| .+|+.++...+.+++.+..| .+.-.+...+|++ +....+.++ ..+ .++|+++.-.|
T Consensus 527 ~t~hPyqp~e~sQG~lq~i~elq~~l~eLtG----md~~Sl~p~sGA~-gE~A~Lmair~yh~~~Ge~~r~~vLIp~saH 601 (954)
T PRK12566 527 AQLHPFAPREQAEGYRAMIDELEAWLCAITG----FDAICMQPNSGAQ-GEYAGLLAIRRYHRSRGQSQRDICLIPSSAH 601 (954)
T ss_pred hcCCCCCchhhhcCHHHHHHHHHHHHHHHHC----CCeEeecCCchHH-HHHHHHHHHHHHHHhcCCCCCCEEEeccccc
Confidence 44466777 67888888888888887766 3333444444443 333333332 222 25788888777
Q ss_pred CChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCe
Q 037587 144 PGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223 (464)
Q Consensus 144 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~ 223 (464)
+.-...+... |++++.++.+++ ..+|+++|++.+++. ..++.+|.+++|++-.+. .+++++|+++|+++|+
T Consensus 602 gtNpasa~~~-GieVv~Vp~D~~--G~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Ga 672 (954)
T PRK12566 602 GTNPASAQMA-GMRVVIVECDPD--GNVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVY---EEGIREICEVVHQHGG 672 (954)
T ss_pred ccCHHHHHHC-CCEEEEeccCCC--CCcCHHHHHHHhhcc---CCCEEEEEEEecCcCcee---cchHHHHHHHHHHcCC
Confidence 4434445545 999999998743 379999999998631 247888888888665543 3669999999999999
Q ss_pred EEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC----ccEEEEEEecCHHHHHHHHHh
Q 037587 224 HIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP----GFRVGMIYSNNERVVSAATKM 299 (464)
Q Consensus 224 ~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~----GlRiG~l~~~~~~~~~~~~~~ 299 (464)
++++|.+... ... ...... ..+..++..+++|+|+.| |.-+|.+.+ .+.+...+...
T Consensus 673 lv~vDgA~~~---a~~--~l~~Pg-------------~~GADi~~~s~HKtf~~P~G~GGP~vG~iav-~~~L~pfLp~~ 733 (954)
T PRK12566 673 QVYMDGANLN---AQV--GLARPA-------------DIGADVSHMNLHKTFCIPHGGGGPGMGPIGV-RAHLAPFVANH 733 (954)
T ss_pred EEEEEeeChh---hcc--CCCChh-------------hcCCCEEEecCCcccCcCccCCCCccchhhh-hhhhhhhccCC
Confidence 9999998852 111 111111 226678889999998522 444565544 23233333221
Q ss_pred c--c-------cCC------CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEE--E
Q 037587 300 S--S-------FGL------VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLF--C 361 (464)
Q Consensus 300 ~--~-------~~~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f--~ 361 (464)
. . ... .+.....++..++.... .+ +.+....-..+.+++.+.|.+. ++.+.++.+-+| +
T Consensus 734 P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG--~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEf 810 (954)
T PRK12566 734 PVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMG--PQ-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHEC 810 (954)
T ss_pred CCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHC--HH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEE
Confidence 1 0 011 11112223333333322 22 4444444455667888888663 444422222211 2
Q ss_pred EEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 362 WVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+++........ ....++.++|+ ++||...- ..|. ..+++||+... .+++++++++++|+.+.++.+
T Consensus 811 ii~~~~l~~~~g-~~~~dvakRL~-d~Gihapt-~~fP--v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 811 ILDLRPLKAQTG-ISEEDVAKRLM-DYGFHAPT-MSFP--VPGTLMVEPTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred EEEccccccccC-CCHHHHHHHHH-HCCcEEeE-Eeec--cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 234432221111 12245888887 78998643 3443 37789999976 689999999999998887743
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-10 Score=113.48 Aligned_cols=347 Identities=13% Similarity=0.137 Sum_probs=180.6
Q ss_pred CCCCCC-CCCCceEEeecc--cccc--cHHHHHH--HHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHH
Q 037587 27 NPYDQL-HNPSGIIQMGLA--ENQL--SFDLLES--WLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMAR 99 (464)
Q Consensus 27 ~~y~~~-~~~~~~i~l~~~--~n~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~ 99 (464)
..|..+ .+...+||+..+ .+.+ ..|.+.+ ++.++..... ....... .-..+....+++.+.+
T Consensus 35 G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~--------~~~~~~~---~~~~~~~~~la~~l~~ 103 (443)
T PRK08297 35 GSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAA--------LNKPSNS---DVYTVEMARFVDTFAR 103 (443)
T ss_pred CCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhh--------hhccccC---CcCCHHHHHHHHHHHh
Confidence 345555 256678898655 3333 3466666 6665422100 0000000 0112333445555443
Q ss_pred HcCCCCCCCCCcEEEeCChHHHHHHHHHHhc--------CC------CCeEEEcCCCCCChhhhcccCCCcEEE------
Q 037587 100 IRGNKVKFDPNKLVLTAGSTAANETLMFCLA--------DP------GDAFLLPTPYYPGFDRDLKWRPGVEIV------ 159 (464)
Q Consensus 100 ~~~~~~~~~~~~i~it~G~~~al~~~~~~l~--------~~------gd~Vlv~~p~y~~~~~~~~~~~g~~~~------ 159 (464)
..+ +-..+.|+++++++|++..+++... .. ..+|+...-+|++....+....|....
T Consensus 104 ~~~---p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~ 180 (443)
T PRK08297 104 VLG---DPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFP 180 (443)
T ss_pred hcC---CCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCC
Confidence 221 0123689999999999999988752 11 257999999988765433222121100
Q ss_pred -----EEecCCCCCc-----c---c------CHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHH
Q 037587 160 -----PIHCSSSNGF-----R---I------TISALENAYQQAQTLNLKVKGVLITNP-SNPLGT-AMTHQELNHLINFS 218 (464)
Q Consensus 160 -----~v~~~~~~~~-----~---~------d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~ 218 (464)
.++.. .-.+ . . +++.+++.+.+ ...++.+|++. | ..-.|. ..|.+.++++.++|
T Consensus 181 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~E-Pi~g~~G~~~pp~~yl~~lr~lc 255 (443)
T PRK08297 181 KFDWPRIDNP-KLRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAE-PIQGEGGDNHFRPEFFAAMRELC 255 (443)
T ss_pred CCCccccCCC-CCCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEc-cccCCCCCcCCCHHHHHHHHHHH
Confidence 01100 0000 0 0 12334444432 23467666654 5 333454 46788899999999
Q ss_pred hhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH-
Q 037587 219 KSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT- 297 (464)
Q Consensus 219 ~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~- 297 (464)
+++|+++|.||++.++...+. . .. .+... ..+.++ +|+|.+++ | |.+.+ ++ +.....
T Consensus 256 ~~~g~llI~DEV~tGfGRtG~--~-~a-~~~~g---------v~PDiv---~~gK~l~~-~---a~l~~-~~-i~~~~~~ 313 (443)
T PRK08297 256 DEHDALLIFDEVQTGVGLTGT--A-WA-YQQLG---------VRPDIV---AFGKKTQV-C---GIMAG-RR-VDEVEDN 313 (443)
T ss_pred HHcCCEEEEechhhccCccch--H-HH-HHhcC---------CCCCEE---Eecccccc-c---ceecc-hH-HHHhhhh
Confidence 999999999999987422221 1 11 11110 112333 68998752 2 44443 32 222111
Q ss_pred H------hcccCCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-Ce-eecCCccEEEEEecC
Q 037587 298 K------MSSFGLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IR-CLKSNAGLFCWVDMR 366 (464)
Q Consensus 298 ~------~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~-~~~~~~g~f~~~~l~ 366 (464)
. ....+..++++..++.+.|+ ..+. .+..+++-+.+. +.|.+...+++ +. ...+. |+++.+.++
T Consensus 314 ~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~---~~L~~l~~~~~~~~~~vrg~-G~~~~i~~~ 388 (443)
T PRK08297 314 VFAVSSRINSTWGGNLVDMVRARRILEVIEEDGL-VENAARQGEYLL---ARLEELAAEFPAVVSNVRGR-GLMCAFDLP 388 (443)
T ss_pred hccCccccCCCCCccHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHH---HHHHHHHHHCCCcceeeecc-ceEEEEEec
Confidence 1 11122356666666666554 2222 222222222222 22333223332 21 22333 578888885
Q ss_pred cccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 367 HLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 367 ~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.. .....++..++ ++||++.|+. ...+|++.+. +++++++.++++|.+++++.
T Consensus 389 ~~------~~~~~~~~~l~-~~Gvl~~~~~------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 389 TT------ADRDEVIRRLW-EEGVLVLPCG------ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CH------HHHHHHHHHHH-HCCEEEecCC------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 31 12234666666 6799998753 2468987665 69999999999999998753
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-10 Score=125.90 Aligned_cols=309 Identities=14% Similarity=0.157 Sum_probs=180.1
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe-CChHHHHHHHHHHh----cCCCC----eEEEcCCCCCChhhhcccCC
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLVLT-AGSTAANETLMFCL----ADPGD----AFLLPTPYYPGFDRDLKWRP 154 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it-~G~~~al~~~~~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~~ 154 (464)
+|..++...+.+++.+..| .+ ++.+. +|++++....+.++ .++|+ +|++++..|+.....+...
T Consensus 538 qG~l~~i~e~q~~l~eltG----~d--~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~- 610 (954)
T PRK05367 538 AGYRELIDQLEAWLAEITG----YD--AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMA- 610 (954)
T ss_pred HHHHHHHHHHHHHHHHHHC----CC--CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHC-
Confidence 3566777777777777665 33 45554 45655554433332 25665 5999999997766667666
Q ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 155 GVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 155 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
|++++.++++.+ ..+|+++|++.+++. ..++.+|++++|++-.+.. +++++|+++|+++|+++++|.++...
T Consensus 611 G~~vv~v~~d~~--G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e---~~I~eI~~i~h~~G~~v~VDgA~~~a 682 (954)
T PRK05367 611 GMKVVVVACDEN--GNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFE---ETIREICEIVHEHGGQVYLDGANMNA 682 (954)
T ss_pred CCEEEEECCCCC--CCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeec---CCHHHHHHHHHHcCCEEEEECcChhh
Confidence 999999998743 478999999988641 2357888899887653333 35888999999999999999999632
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCC----CccEEEEEEecCHHHHHHHHHhc--------cc
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM----PGFRVGMIYSNNERVVSAATKMS--------SF 302 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~----~GlRiG~l~~~~~~~~~~~~~~~--------~~ 302 (464)
...-. ... ..+..++..|.+|+|+. .|--+|++.+.. .+...+.... ..
T Consensus 683 l~~l~-----~pg-------------~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~-~l~p~lpg~~v~~~~~~~~~ 743 (954)
T PRK05367 683 QVGLA-----RPG-------------DIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA-HLAPFLPGHPVQIAGGETGI 743 (954)
T ss_pred ccCCC-----Chh-------------hcCCCEEEecCcccCCCCcCCCCCceEEEeecc-cccccCCCCccCcCCCCCCc
Confidence 22111 111 11455778899999752 344478887743 2222211100 01
Q ss_pred CCCC--hHHHHH----HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccE--EEEEecCcccccCC
Q 037587 303 GLVS--SQTQYL----LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGL--FCWVDMRHLLVSNT 373 (464)
Q Consensus 303 ~~~s--~~~q~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~--f~~~~l~~~~~~~~ 373 (464)
+.++ ...|.. +..++.... .+.+++..+..-.+.+++.+.|.+. .+.+..+.+-. =+.+++........
T Consensus 744 g~v~ta~~g~al~~~~a~~yi~~~G--~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g 821 (954)
T PRK05367 744 GAVSAAPFGSASILPISWMYIRMMG--AEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTG 821 (954)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCC
Confidence 1111 221211 111121111 2334444443445667778888663 33222211100 12234422111101
Q ss_pred hhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 374 FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 374 ~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
....++.++| .++|+...- ..|. .++.+||+++. .+++++++++++|..+.++.+
T Consensus 822 -~~~~di~krL-~d~G~~~~t-~~~p--v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~ 877 (954)
T PRK05367 822 -ITVDDIAKRL-IDYGFHAPT-MSFP--VAGTLMVEPTESESKAELDRFCDAMIAIRAEID 877 (954)
T ss_pred -CCHHHHHHHH-HHCCCeEee-cCCc--cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 1124577887 478998754 3343 36789998876 688999999999988776554
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.2e-12 Score=119.38 Aligned_cols=298 Identities=15% Similarity=0.140 Sum_probs=191.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
+.++.+.+|+|++ .++.+++.-| -......+.+|+.||.-|+...-.+..+...++.. |+.+..+.-+
T Consensus 184 hkelE~l~A~f~g---------~e~a~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLS-gAtiRVfkHN- 251 (519)
T KOG1357|consen 184 HKELEELVARFLG---------VEDAIVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGARLS-GATTRVFRHN- 251 (519)
T ss_pred HHHHHHHHHHhcC---------CcceEEEecc-ccccccCcceeecCCcceeeccccchheecccccc-CceEEEEecC-
Confidence 4677777777775 4566777666 45566677789999999999999999888888876 8888777643
Q ss_pred CCCcccCHHHHHHHHHHHhhcCC-----ce-EEEEE-eCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 166 SNGFRITISALENAYQQAQTLNL-----KV-KGVLI-TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~-----~~-~~vil-~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
|...||+.|+++...+. .- +.+++ -.-..--|.+ ..+.+++++++++..+++.||+++-...+.
T Consensus 252 ------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~i---v~Lp~vvalkkkykayl~lDEAHSiGA~g~ 322 (519)
T KOG1357|consen 252 ------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTI---VDLPEVVALKKKYKAYLYLDEAHSIGAMGA 322 (519)
T ss_pred ------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCee---cccHHHHHhhccccEEEEeeccccccccCC
Confidence 56788888877643321 11 22322 2233455665 468889999999999999999998543332
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc---C-CC-ChHHHHHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF---G-LV-SSQTQYLL 313 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~---~-~~-s~~~q~~~ 313 (464)
. -..+..+.. .+..+..|.+++|.|.||.+| ||+.+ ++.+.+.++..... . +. +++.|...
T Consensus 323 t---Grgvce~~g-------~d~~dvDImMGtftKSfga~G---Gyiag-sk~lid~lrt~s~~~~yat~~sppvaqq~~ 388 (519)
T KOG1357|consen 323 T---GRGVCEYFG-------VDPEDVDIMMGTFTKSFGAAG---GYIAG-SKELIDYLRTPSPSALYATSLSPPVAQQIL 388 (519)
T ss_pred C---CcceeeccC-------CCchhheeecceehhhccccc---ceecC-cHHHHhhhccCCCceeecccCChHHHHHHH
Confidence 2 122222211 123466788899999999777 88888 55566655543322 1 22 33444443
Q ss_pred HHH--cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEec--CcccccCChhHHHHHHHHHHHhcC
Q 037587 314 SRM--LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDM--RHLLVSNTFEAEKELWKKIIFEVG 389 (464)
Q Consensus 314 ~~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l--~~~~~~~~~~~~~~l~~~ll~~~g 389 (464)
..+ +...+. ....++..++++++..+++..|+..|+-++..+....+.+-+ +.... ++-..++ +++
T Consensus 389 ssl~~i~G~dg-t~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~k~~--------~f~r~~l-~~n 458 (519)
T KOG1357|consen 389 TSVKHIMGEDG-TNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPAKIV--------AFSREML-ERN 458 (519)
T ss_pred HHHHhhcCCCc-ccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCccccc--------HHHHHHH-hcC
Confidence 332 221112 345677788889999999999999998888766653332222 21111 2445565 446
Q ss_pred eEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 390 LNISPGSSCH-CNEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 390 I~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
|.|.-+.... +...+..|+|.+. .+.|+++.+++.+.+.
T Consensus 459 igvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~ 499 (519)
T KOG1357|consen 459 IGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRV 499 (519)
T ss_pred ceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence 6655332211 2234678999877 7889999999988765
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-10 Score=121.98 Aligned_cols=305 Identities=18% Similarity=0.199 Sum_probs=179.3
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHH---HHHhc-----CCCCeEEEcCCCCCChhhhcccCCC
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETL---MFCLA-----DPGDAFLLPTPYYPGFDRDLKWRPG 155 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~---~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~~g 155 (464)
+|..++...+.+++.+..| .+...+.. +|+.++-... ++... ...++|+++.-.++.....+... |
T Consensus 526 qG~lq~i~elq~~l~eltG----md~~Sl~p-~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~-G 599 (939)
T TIGR00461 526 EGYQELIAQLEKWLCSITG----FDAISLQP-NSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMA-G 599 (939)
T ss_pred HHHHHHHHHHHHHHHHHHC----CCCcccCC-chHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHC-C
Confidence 4556677777777777666 44333333 4444444332 23321 12357999998886655556666 9
Q ss_pred cEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 156 VEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 156 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
++++.++.++ +..+|+++|++.+++ .+.++++|++++|+| +|.+-+ .+++|+++|+++|.++++|.++....
T Consensus 600 ~~Vv~V~~d~--~G~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~al 671 (939)
T TIGR00461 600 MQVVPVNCDQ--DGNIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNAQ 671 (939)
T ss_pred CEEEEeccCC--CCCcCHHHHHHHHhh---cCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhhC
Confidence 9999999874 457999999999874 234889999999998 888732 38999999999999999999985311
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC----CCccEEEEEEecCHHHHHHHHH--h----------
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS----MPGFRVGMIYSNNERVVSAATK--M---------- 299 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g----~~GlRiG~l~~~~~~~~~~~~~--~---------- 299 (464)
.. . ... +..+..+++.|.+|+|+ ..|--+|++.+... +...+.. +
T Consensus 672 ~~-l----~~P-------------g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~-L~~~lPg~~v~~t~d~~gre 732 (939)
T TIGR00461 672 VG-L----TSP-------------GDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH-LIPFLPKHDVVSMITGIGGS 732 (939)
T ss_pred CC-C----CCc-------------cccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh-chhhcCCCcccccccCCCCc
Confidence 11 1 110 12256678899999775 34556899988533 3222210 0
Q ss_pred cccCCCC-----h----HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CccE-E--EEEecC
Q 037587 300 SSFGLVS-----S----QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS-NAGL-F--CWVDMR 366 (464)
Q Consensus 300 ~~~~~~s-----~----~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~-f--~~~~l~ 366 (464)
.....++ + +...+...++. .+-+++..+.--.+.+++.+.|.+ ++++.-+ ..|. | +.++++
T Consensus 733 q~Iga~s~~~~g~a~~~l~a~~yi~~lG-----~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~ 806 (939)
T TIGR00461 733 KSIGSVSAAPYGSASILPISWMYIKMMG-----NEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLR 806 (939)
T ss_pred cccccccccccCcHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEecc
Confidence 0001111 1 11112222222 223445444445566788888876 4444322 2232 1 345665
Q ss_pred cccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCe--EEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 367 HLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGW--FRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 367 ~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~--~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
......+ ....++.++|+ ++|+..-. ..|. ..+. +|.+-+ .+++++++++++|.++-++.+
T Consensus 807 ~~~~~~g-~~~~dIakrL~-d~G~hapt-~~~p--v~g~lmiepTE~-eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 807 PLKAKTG-IEAIDVAKRLQ-DYGFHAPT-LSFP--VPGTLMVEPTES-ESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred chhhhcC-CCHHHHHHHHH-hCCeeccc-cCCc--cCCeEEEEeecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 3211111 22346888887 67998532 3343 2333 455554 588999999999877755444
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-10 Score=115.88 Aligned_cols=348 Identities=14% Similarity=0.111 Sum_probs=177.9
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.+...... +.....|... ...+|-+.+++.+.+..
T Consensus 51 ~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~--------l~~~~~~~~~-~~~~la~~l~~~l~~~~--- 118 (464)
T TIGR00699 51 YLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATT--------LINRPALGNF-PSKDWAKILKEGILKVA--- 118 (464)
T ss_pred EEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHh--------hcccccCCcH-HHHHHHHHHHHhHHhhC---
Confidence 4445566788999865 3333 34667777665211100 0111122211 11233344333222221
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC--------------------------CC---CeEEEcCCCCCChhhhcccCCC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD--------------------------PG---DAFLLPTPYYPGFDRDLKWRPG 155 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~--------------------------~g---d~Vlv~~p~y~~~~~~~~~~~g 155 (464)
+-..+.++++++++|+++.+++.... +| .+|+....+|++....+....|
T Consensus 119 -p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~ 197 (464)
T TIGR00699 119 -PKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTR 197 (464)
T ss_pred -CCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcC
Confidence 11236899999999999999887521 11 2699999999776433221111
Q ss_pred c-----------EEEEEecCC-CCCcc-----------cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHH
Q 037587 156 V-----------EIVPIHCSS-SNGFR-----------ITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQEL 211 (464)
Q Consensus 156 ~-----------~~~~v~~~~-~~~~~-----------~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l 211 (464)
. .+..+|... ...+. -+++.+++.+++ ...++.+|++.-...-.|... +.+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~iAAvI~EPv~g~~G~~~~~~~yl 274 (464)
T TIGR00699 198 SKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK---WHKPVAAIIVEPIQSEGGDNHASPDFF 274 (464)
T ss_pred CccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHh---cCCcEEEEEEeCCCCCCCCcCCCHHHH
Confidence 1 111122110 00000 124455555542 233576666653355567766 67889
Q ss_pred HHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHH
Q 037587 212 NHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNER 291 (464)
Q Consensus 212 ~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~ 291 (464)
+++.++|+++|+++|.||+..++ +..+ .+.. .+.. ++ ...+. +.+++|.+|-.| ++++. +.
T Consensus 275 ~~lr~lc~~~g~lLI~DEV~tGf--GrtG-~~fa-~e~~-gv------~~~PD---i~t~gK~lg~gG----~~~~~-~~ 335 (464)
T TIGR00699 275 RKLRDITKKHNVAFIVDEVQTGV--GATG-KFWA-HEHW-NL------DDPPD---MVTFSKKFQTAG----YFFHD-PA 335 (464)
T ss_pred HHHHHHHHHcCCEEEEeeeeeCC--CCCc-chhH-HHhc-CC------CCCCC---EEEehhhhccCC----ccccc-hh
Confidence 99999999999999999999774 3221 1111 1111 00 00022 358899995234 44442 22
Q ss_pred HHHHHHH--hcccCCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCC--Ceeec-CCccEEEEE
Q 037587 292 VVSAATK--MSSFGLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAG--IRCLK-SNAGLFCWV 363 (464)
Q Consensus 292 ~~~~~~~--~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~~~~~-~~~g~f~~~ 363 (464)
+.. ... ....+..++++.+++.+.|+ +.++ .++.+++-+.+++. |.+..+++. +.-.. ..-|+++-+
T Consensus 336 ~~~-~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~---L~~l~~~~~~~i~~vRg~G~Glm~gi 410 (464)
T TIGR00699 336 FRP-NKPYRQFNTWMGDPSRALILREIIQEIKRKDL-LENVAHVGDYLYTG---LEDLQKKYPEFIQNLRGKGRGTFIAW 410 (464)
T ss_pred ccC-CCCcccccCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH---HHHHHHhCCCceeeecccCeEEEEEE
Confidence 110 000 11112245555555554443 3222 22232222333222 222222233 11121 134678888
Q ss_pred ecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 364 DMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 364 ~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
+++.. .....++..++ ++||++.+. +.+.+||.... +++++++.++++|.+++
T Consensus 411 e~~~~------~~~~~i~~~~~-~~Gvl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 411 DTPDE------AKRDKLLKKAR-NNGVNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred ecCCH------HHHHHHHHHHH-HCCcEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 87521 11234566665 679999753 24679999877 79999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.8e-11 Score=118.27 Aligned_cols=250 Identities=14% Similarity=0.173 Sum_probs=170.9
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-----C---CC------eEEEcCCCCCChhhhc
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD-----P---GD------AFLLPTPYYPGFDRDL 150 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~-----~---gd------~Vlv~~p~y~~~~~~~ 150 (464)
+..++.+.+..++.+.++.+ +...=.+|+|+|+++.+.+.+... . +. .|+++.-.|..+..++
T Consensus 98 ~a~~~E~~~v~~l~~l~~~~---~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa 174 (460)
T COG0076 98 AAAELEERVVNMLSDLLGAP---EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA 174 (460)
T ss_pred hHHHHHHHHHHHHHHHhCCC---CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHH
Confidence 56889999999999887732 334567999999999988766421 1 11 6899998998899888
Q ss_pred ccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecc
Q 037587 151 KWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEI 230 (464)
Q Consensus 151 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Dea 230 (464)
..+ |++...+++++. ++.+|++++++++.+....+ +|+-+-++.+||.+ +++++|.++|+++++++.+|.|
T Consensus 175 ~~l-G~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~i---Ddi~~ia~ia~~~~i~lHVDAA 245 (460)
T COG0076 175 RYL-GLGLRRVPTVPT-DYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSI---DDIEELADIAEEYGIWLHVDAA 245 (460)
T ss_pred HHh-CCCceeEEeccC-ccccCHHHHHHHHHhhccCc----eEEEEecCCCCCcc---CCHHHHHHHHHHcCCcEEEEcc
Confidence 887 999999998864 78999999999998732111 36667788999998 7899999999999999999999
Q ss_pred cccccc--CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCH-HHHHHHHHhcccCC---
Q 037587 231 YSGTVF--DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE-RVVSAATKMSSFGL--- 304 (464)
Q Consensus 231 y~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~-~~~~~~~~~~~~~~--- 304 (464)
|+++.. ... ... +.-. .....-+.-+++|.. ++-..+||++.+++ .+.+.......++.
T Consensus 246 ~GG~~~pf~~~--~~~----~~f~--------l~~vdSIt~d~HK~g-~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~ 310 (460)
T COG0076 246 FGGFLLPFLEP--DGR----WDFG--------LEGVDSITVDGHKYG-LAPIGCGVVLFRDEEALRRILIFADYYLPGGG 310 (460)
T ss_pred ccceeecccCc--cch----hhcC--------CCCceEEEECccccc-CCCCCceEEEEECHHHhhhhhhcccccCCCCC
Confidence 998653 222 111 1111 113334456999976 57788999999877 44444332222211
Q ss_pred -------CCh-----HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceeec-CCccEEEEEecCc
Q 037587 305 -------VSS-----QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLK-SNAGLFCWVDMRH 367 (464)
Q Consensus 305 -------~s~-----~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~-~~~g~f~~~~l~~ 367 (464)
.+. +.+++....+. .+-.+++.++.-+..+++.+.|++.| +++.. |.. ..+.+++++
T Consensus 311 ~~~~ti~~sr~~~~~~~~~~~l~~lG-----~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l-~~V~fr~~~ 381 (460)
T COG0076 311 IPNFTILGSRPGRQALALYANLRRLG-----REGYRKLLDRTLELARYLAEELEKLGDFELVNEPEL-PIVAFRLKD 381 (460)
T ss_pred cCceeEeeccchHHHHHHHHHHHHhC-----HhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCcc-ceEEEEcCC
Confidence 111 22222223332 23345556666677788999999986 77654 554 477777754
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-11 Score=118.48 Aligned_cols=167 Identities=16% Similarity=0.225 Sum_probs=124.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..+..+..|+.++ .....+++||++.++..++.+++.+||.||++.+||.+..+.+-.. |+.++++....
T Consensus 72 i~eAqe~aA~~fg---------Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glila-Ga~Pvyl~p~~ 141 (557)
T COG1982 72 IKEAQELAARVFG---------ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILA-GATPVYLEPSR 141 (557)
T ss_pred HHHHHHHHHHHhC---------CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHc-CCceEEecCCC
Confidence 4677777787775 3456889999999999999999999999999999999888876655 99988887654
Q ss_pred CCCc----ccCHHHHHHHHHHHhhcCCce-EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 166 SNGF----RITISALENAYQQAQTLNLKV-KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 166 ~~~~----~~d~~~l~~~i~~~~~~~~~~-~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+..| .++.+.+.+++.+. +.. |+++++|| +-.|.++. +++|++++.+.++|+.+||++.. .++..+
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~----~~~~k~~vitnp-TYdGv~~n---~~~i~~~~~~~~a~v~~deah~~-~~~~~~ 212 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAH----PDAEKLAVITNP-TYDGVCYN---LRKIVELLHHYGAWVLYDEAHPA-HFDFSP 212 (557)
T ss_pred CccccccCCCCHHHHHHHHHhC----hhhheeEEEecC-ccceEeec---HHHHHHHHhhcCceEEhhhcCcc-cccccc
Confidence 4323 46889999888763 234 88999999 77899976 55677777788999999998864 233221
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEE
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIY 286 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~ 286 (464)
..+. ... +.+.+++..|.+|.+ +++..+-.+
T Consensus 213 -~l~~---~~~---------~~~~~~~tqS~HK~l--~alSQaS~i 243 (557)
T COG1982 213 -MLPE---SAL---------NGGADFVTQSTHKLL--AALSQASMI 243 (557)
T ss_pred -cCcc---hhh---------hcCceEEEechhhhh--hhhhhhHHH
Confidence 1111 111 237889999999997 455555443
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.7e-10 Score=111.98 Aligned_cols=290 Identities=16% Similarity=0.187 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh------hhhcccCCCcEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF------DRDLKWRPGVEIVP 160 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~------~~~~~~~~g~~~~~ 160 (464)
..+++.+|++++ . +..+++++++.++.+++.+ +.+||.|++.+..|..| ...++.. |++++.
T Consensus 125 ~~le~~lA~l~g--------a--e~alvv~sg~aAi~l~l~~-l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~-G~~~~~ 192 (454)
T TIGR00474 125 SHVEGLLCELTG--------A--EDALVVNNNAAAVLLALNT-LAKGKEVIVSRGELVEIGGSFRIPDVMEQS-GAKLVE 192 (454)
T ss_pred HHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHHH-hCCcCEEEECCChhhhhcchhhHHHHHHHc-CCEEEE
Confidence 678888888875 2 2345677777888888855 57999999998664221 2234445 999998
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCC--CC--CCCHHHHHHHHHHHhhCCeEEEEeccccccc-
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL--GT--AMTHQELNHLINFSKSKRIHIVSDEIYSGTV- 235 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPt--G~--~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~- 235 (464)
++.+. ..+++++++++.+ ++++|++.+++||+ |. .. ++++|+++|+++|+++|+|...+.+.
T Consensus 193 v~~~~----~~~l~dle~aI~~------~T~lv~~~h~sN~~~~G~~~~~---dl~~I~~la~~~g~~vivD~~sG~l~~ 259 (454)
T TIGR00474 193 VGTTN----RTHLKDYEDAITE------NTALLLKVHTSNYRIVGFTEEV---SIAELVALGREHGLPVMEDLGSGSLVD 259 (454)
T ss_pred eCCCC----CCCHHHHHHhcCc------CCEEEEEEccCcccccCCCCCC---CHHHHHHHHHHcCCeEEEECCCccccc
Confidence 87542 2468889888764 88999999999995 63 43 58889999999999999997633210
Q ss_pred ---cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHH
Q 037587 236 ---FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQ 310 (464)
Q Consensus 236 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q 310 (464)
|+-. ..+.+.... ..+..+++.|.+|.+|-+ ..|+++++++ ..+.++..... ..+.-...
T Consensus 260 ~~~~gl~--~~p~~~~~~----------~~GaDiv~fSg~K~LgGp--~~G~i~g~~~-~i~~l~~~~l~r~lr~~k~~l 324 (454)
T TIGR00474 260 LSRYGLP--DEPTVQEVI----------AAGVDLVTFSGDKLLGGP--QAGIIVGKKE-LIERLKKNPLTRALRVDKLTL 324 (454)
T ss_pred chhccCC--CCcccccHh----------HcCCCEEEecCccccCCC--eEEEEEECHH-HHHhhhhchhHHHHhhChHHH
Confidence 1100 001111111 124568889999998534 4899998554 33332211100 01111222
Q ss_pred ----HHHHHHcCCc-hhh----HHHHHHHHHHHHHHHHHHHHHHHhC---CC--eeecCC----ccEEEEEecCcc---c
Q 037587 311 ----YLLSRMLSDK-KFT----CNYMKENRKRLRKRKEMLVSGLKVA---GI--RCLKSN----AGLFCWVDMRHL---L 369 (464)
Q Consensus 311 ----~~~~~~l~~~-~~~----~~~~~~~~~~~~~~~~~l~~~l~~~---g~--~~~~~~----~g~f~~~~l~~~---~ 369 (464)
..+..++... .+. .+.+....+.+.++...+.+.|+.. ++ .+.+.. ||-+--..+|.. .
T Consensus 325 a~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~ 404 (454)
T TIGR00474 325 AALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTL 404 (454)
T ss_pred HHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEE
Confidence 2222222211 110 1223333456666777788888763 22 333322 221111112211 0
Q ss_pred ccCChhHHHHHHHHHHHhcC--eEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 037587 370 VSNTFEAEKELWKKIIFEVG--LNISPGSSCHCNEPGWFRICFANITEETLQVALQRI 425 (464)
Q Consensus 370 ~~~~~~~~~~l~~~ll~~~g--I~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 425 (464)
.... ....++.. .|++.. |..+ -.++.+.+-+.++.+++++.++++|
T Consensus 405 ~~~~-~~~~~l~~-~lr~~~~~ii~r-------~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 405 TPDG-LSAEKLEA-RLRELPPPIIGR-------IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred ecCC-CCHHHHHH-HHhcCCCCEEEE-------EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 0001 11223444 445555 3333 2367788988888888998888776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-10 Score=110.63 Aligned_cols=293 Identities=15% Similarity=0.101 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCCh-h-hhcccCCCc-EEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-DPGDAFLLPTPYYPGF-D-RDLKWRPGV-EIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~-~-~~~~~~~g~-~~~~v~ 162 (464)
.++-+.+.+.+.+.++ .+-+.+-++++.|++.+++.++..++ ++|++||+.. .|+.- . ..++.. |+ ++..+.
T Consensus 38 ~~i~~e~~~~L~~l~~--~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~-g~~~v~~l~ 113 (374)
T TIGR01365 38 KEKLAEAIKKTREMLG--VPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQL-KLPDVRVLE 113 (374)
T ss_pred HHHHHHHHHHHHHHhC--CCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhc-CCCCcEEEc
Confidence 4555555555555554 11122236679999999999999998 5899999865 56544 3 445545 88 466665
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.+. +-.++++.++. + +.|++++....||...|.+ +++..+ ++.++|+|.+-+ ++.. +
T Consensus 114 ~~~--g~~~~~~~ve~----------~-~~v~~vhnETSTGv~npv~---~i~~~~--~~~lliVDavSs---~g~~--~ 170 (374)
T TIGR01365 114 AEY--GKLPDLKKVDF----------K-NDVVFTWNGTTSGVRVPNG---DFIPAD--REGLTICDATSA---AFAQ--D 170 (374)
T ss_pred CCC--CCCCCHHHcCC----------C-CCEEEecCCCchheecccc---cccccc--CCCcEEEEccch---hcCC--C
Confidence 432 33578888762 1 1267888888999998753 444322 478999999887 6554 2
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH--------Hh---------------
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT--------KM--------------- 299 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~--------~~--------------- 299 (464)
..+. ...+++.|-.|.+|+|+ .+++++.+++.+.+... .+
T Consensus 171 -l~~d---------------~iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 233 (374)
T TIGR01365 171 -LDYH---------------KLDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFE 233 (374)
T ss_pred -CChh---------------HCcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhc
Confidence 1211 24467889999998765 36777775555433211 10
Q ss_pred -cccCCCChHHHHHHHHHcCCchhhHH--HHHHHHHHHHHHHHHHHHHHHhCC-CeeecC----CccEEEEEecCcc-cc
Q 037587 300 -SSFGLVSSQTQYLLSRMLSDKKFTCN--YMKENRKRLRKRKEMLVSGLKVAG-IRCLKS----NAGLFCWVDMRHL-LV 370 (464)
Q Consensus 300 -~~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~----~~g~f~~~~l~~~-~~ 370 (464)
..+++++.....++..++. ++.+ -++.+.++++++.+.+++.++++| +.++.. .+...+.+.++.. .+
T Consensus 234 ~~t~~TP~v~~l~a~~~~l~---~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~ 310 (374)
T TIGR01365 234 GSTINTPSMLCVEDWLDALK---WAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAID 310 (374)
T ss_pred CCCCCChHHHHHHHHHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCcccc
Confidence 0111122222333333332 1122 377788888999999999999998 666542 2333444555432 11
Q ss_pred ----cCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 371 ----SNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 371 ----~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
...++-..++... ++++||.+-+|..- .....|||+.-. ++.++++.++..|.=+.
T Consensus 311 ~~~~~~~~~~~~~~~~~-l~~~gi~i~~G~~~--~~~~~fRIg~~G~i~~~di~~l~~~l~~~~ 371 (374)
T TIGR01365 311 ALDEDAQADFAKELIST-LEKEGVAYDIGSYR--DAPSGLRIWCGATVEKSDLECLCPWLDWAF 371 (374)
T ss_pred ccccchhhHHHHHHHHH-HHHCCEEEeccccc--cCCCceEEecCCcCCHHHHHHHHHHHHHHH
Confidence 0011112245444 46779999887643 234679998754 89999999999886443
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-09 Score=107.51 Aligned_cols=351 Identities=14% Similarity=0.136 Sum_probs=185.7
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||-..+ .+.. ..+.+.+++.++... +.....+..+ +.+ -..+|+.|-+....
T Consensus 37 yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~----------l~~~~~~~~t-~~P--a~~LA~~L~~~aP~- 102 (449)
T COG0161 37 YLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDK----------LPHVMFGGFT-HEP--AIELAEKLAELAPE- 102 (449)
T ss_pred EEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHh----------CCchhhcccC-Cch--HHHHHHHHHHhCCC-
Confidence 4445556667775543 3333 456777777765322 1111111111 112 44455555433210
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCCCChhhhcccCCCc-------------EEEEEec
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA-------DPG-DAFLLPTPYYPGFDRDLKWRPGV-------------EIVPIHC 163 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~~g~-------------~~~~v~~ 163 (464)
-+-++|++++|++++++.+++... +|. .+++.-..+|++-.-......|. .+..++.
T Consensus 103 --~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~ 180 (449)
T COG0161 103 --GGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPA 180 (449)
T ss_pred --CCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCC
Confidence 124689999999999999998753 232 34888888886533221111120 1112221
Q ss_pred CC---C---CCcc----cCHHHHHHHHHHHhhcC-CceEEEEEeCC--CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEec
Q 037587 164 SS---S---NGFR----ITISALENAYQQAQTLN-LKVKGVLITNP--SNPLGTAM-THQELNHLINFSKSKRIHIVSDE 229 (464)
Q Consensus 164 ~~---~---~~~~----~d~~~l~~~i~~~~~~~-~~~~~vil~~P--~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~De 229 (464)
.. . +.+. -..++|++.+.. .+ .++.+ ++.-| .--+|..+ |+.-++++.++|++||+++|.||
T Consensus 181 P~~y~~~~~~~~~~~~~~~a~~le~~i~~---~g~~~IAA-fI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DE 256 (449)
T COG0161 181 PYAYRRGFFGEGDEEFAEAADELEALILE---HGPETIAA-FIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADE 256 (449)
T ss_pred CcccccCCCCCChHHHHHHHHHHHHHHHh---cCcccEEE-EEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeec
Confidence 11 0 1111 113445555443 45 35554 55556 34478765 45569999999999999999999
Q ss_pred cccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH--hccc----
Q 037587 230 IYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK--MSSF---- 302 (464)
Q Consensus 230 ay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~--~~~~---- 302 (464)
+-.+ |+..+.-|.. . ..+.+--+-+++|.++ .| +.+|.+++ .+.+.+.+.. ...|
T Consensus 257 V~tG--FGRTG~~FA~-----e---------~~gi~PDi~~~aKGLT-~GY~Pl~a~l~-~~~I~~~~~~~~~~~f~HG~ 318 (449)
T COG0161 257 VATG--FGRTGKMFAC-----E---------HAGIVPDILCLAKGLT-GGYLPLSAVLT-SDRIYEAFSDGDAGAFMHGH 318 (449)
T ss_pred ceeC--CCcCchhhhh-----h---------hcCCCCCeeeeccccc-ccchhhHhHhh-hHHHHHHHhcccCCeeccCC
Confidence 9987 5533112111 1 1122222448899886 33 56666666 3344444432 2222
Q ss_pred -CCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeee--cCCccEEEEEecCcccccCC-
Q 037587 303 -GLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKV-A-GIRCL--KSNAGLFCWVDMRHLLVSNT- 373 (464)
Q Consensus 303 -~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~--~~~~g~f~~~~l~~~~~~~~- 373 (464)
++.++++.+++.+.|+ +.++ ++ +.++.-.++.+.|++ + +-+.+ --.-|++.-+++......+.
T Consensus 319 TYsghPlacAaAla~L~i~e~e~l----~~----~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~ 390 (449)
T COG0161 319 TYSGNPLACAAALANLDILEEEDL----LE----RVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTP 390 (449)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCH----HH----HHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccc
Confidence 2345665555554433 2222 22 223334445555554 1 11111 12456777788865433322
Q ss_pred h-hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 374 F-EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 374 ~-~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+ ......+...+.++|++++|.. ..+=++... +++++++++++++.+.++..
T Consensus 391 f~~~~~~~~~~~~~e~Gl~iRp~g-------~~i~~~PPliit~~eid~l~~~l~~al~~~ 444 (449)
T COG0161 391 FEARVGARVRAAALERGLLIRPLG-------DVIYLMPPLIITREEIDELVDALREALDET 444 (449)
T ss_pred hhhhHHHHHHHHHHHCCeEEeecC-------CEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 0 0111233444457899999873 134455444 68999999999999998764
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-09 Score=113.98 Aligned_cols=214 Identities=14% Similarity=0.125 Sum_probs=123.0
Q ss_pred CceEEEEEeCC--CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 188 LKVKGVLITNP--SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 188 ~~~~~vil~~P--~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
.++.+||+. | ..-.|.++ +++-++++.++|+++|+++|.||++.++.-.+. .+ . .+.. +.
T Consensus 583 ~~iAAvI~E-PviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~--~f-a-~e~~------------gv 645 (817)
T PLN02974 583 GHIAALIIE-PVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV--ES-A-WELL------------GC 645 (817)
T ss_pred CCEEEEEEe-ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc--hh-h-HHhc------------CC
Confidence 456665554 5 46668765 677899999999999999999999998522222 11 1 1111 11
Q ss_pred EEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH--------hcccCCCChHHHHHHHHHcC---CchhhHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK--------MSSFGLVSSQTQYLLSRMLS---DKKFTCNYMKENRK 332 (464)
Q Consensus 265 vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~--------~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~ 332 (464)
+--+-+++|.++ .| +.+|.+++ .+.+.+.+.. ....++.++++.+++.+.|+ +.+.. +.+.++..
T Consensus 646 ~PDIi~~gKgLt-gG~~Plaa~l~-~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~-~~l~~~~~ 722 (817)
T PLN02974 646 KPDIACYAKLLT-GGLVPLAATLA-TEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTN-PNLIPPGS 722 (817)
T ss_pred CCCEEeeccccc-CCCCccEEEEE-cHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHH-HHHHHHHH
Confidence 122448999998 89 69999999 4455555431 11122356666666655443 43321 12222222
Q ss_pred HHHH-HHHHHHHHHHhCCC-eeecCCccEEEEEecCcccccCCh--hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 037587 333 RLRK-RKEMLVSGLKVAGI-RCLKSNAGLFCWVDMRHLLVSNTF--EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRI 408 (464)
Q Consensus 333 ~~~~-~~~~l~~~l~~~g~-~~~~~~~g~f~~~~l~~~~~~~~~--~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ri 408 (464)
.+.+ ..+.+.+.|.++.. .=.. .-|+++-+++......... .....+...++.++||+++|.. +.+|+
T Consensus 723 ~l~~~l~~~l~~~l~~~p~V~~VR-g~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-------nvi~l 794 (817)
T PLN02974 723 RLRELWDEELVRAISSLPNVERVV-SLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-------NVVYL 794 (817)
T ss_pred HHHHHHHHHHHHHHhhCCCeeEEE-eeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-------CEEEE
Confidence 2221 12233344444421 1122 3357777887532111111 1123455555437899999742 46887
Q ss_pred Eeec-CCHHHHHHHHHHHHHHH
Q 037587 409 CFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 409 s~~~-~~~e~l~~~l~~l~~~l 429 (464)
.... ++++++++++++|.+.+
T Consensus 795 ~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 795 MCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 6544 78999999999998865
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-09 Score=107.38 Aligned_cols=280 Identities=12% Similarity=0.088 Sum_probs=149.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------C----CCCeEEEcCCCCCChhhhcccCCCcE-EE--EEec--------
Q 037587 109 PNKLVLTAGSTAANETLMFCLA----------D----PGDAFLLPTPYYPGFDRDLKWRPGVE-IV--PIHC-------- 163 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~----------~----~gd~Vlv~~p~y~~~~~~~~~~~g~~-~~--~v~~-------- 163 (464)
.+.++++++++|++..+++... . .+.+|+...-+|++....+....|.. .. ..|.
T Consensus 103 ~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 182 (431)
T TIGR03251 103 LPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 182 (431)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCC
Confidence 3689999999999999988652 1 13679999988877653332211211 00 0010
Q ss_pred C----C--CCCcc-------cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEec
Q 037587 164 S----S--SNGFR-------ITISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDE 229 (464)
Q Consensus 164 ~----~--~~~~~-------~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~De 229 (464)
. + ...+. -+++.+++.+.. ...++.+|++.-...-.|.. .+.+.+++|.++|+++|+++|+||
T Consensus 183 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 259 (431)
T TIGR03251 183 PKLTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDE 259 (431)
T ss_pred CcccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 0 0 00000 012333333332 23467777665335556754 577889999999999999999999
Q ss_pred cccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH-H------hccc
Q 037587 230 IYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT-K------MSSF 302 (464)
Q Consensus 230 ay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~-~------~~~~ 302 (464)
++.++...+. . .. .+.. + ..+.++ +++|.+ +. .|++.. ++ +.+... . ....
T Consensus 260 V~tG~GrtG~--~-~a-~~~~-g--------v~PDi~---~~gK~~--~~--~g~~~~-~~-i~~~~~~~~~~~~~~~~T 317 (431)
T TIGR03251 260 VQTGVGLTGT--A-WA-YQQL-G--------VQPDIV---AFGKKT--QV--CGIMAG-RR-VDEVADNVFAVPSRLNST 317 (431)
T ss_pred chhccCccch--H-HH-HHhc-C--------CCCCEE---EecccC--cc--ceEEec-ch-HHHhhhhcccCccccCCC
Confidence 9987433221 1 11 1111 0 112333 579986 22 356554 32 211111 0 1112
Q ss_pred CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCcccccCChhHHHHHH
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELW 381 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~ 381 (464)
++.++++.+++.+.|+--.- ....++.++.-+..++.|.+...+.. +......-|+++.++++.. .....++
T Consensus 318 ~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~ 390 (431)
T TIGR03251 318 WGGNLVDMVRATRILEIIEE-ERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVI 390 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCH------HHHHHHH
Confidence 23556666665555542110 01122222222222233333223332 3221223366777887531 1222466
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 382 KKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 382 ~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
..++ ++||++.|.. .+.+|++.+. ++++++++++++|.+
T Consensus 391 ~~l~-~~Gvl~~~~g------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 391 RQLY-REGVLLLGCG------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred HHHH-hCCeEEecCC------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 6665 6799997643 2458988876 789999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-10 Score=111.66 Aligned_cols=259 Identities=15% Similarity=0.197 Sum_probs=161.2
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCC---CCCcEEEeCChHHHHHHHHHHhcC--------CC-----C-eEEEcCCCCCCh
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKF---DPNKLVLTAGSTAANETLMFCLAD--------PG-----D-AFLLPTPYYPGF 146 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~---~~~~i~it~G~~~al~~~~~~l~~--------~g-----d-~Vlv~~p~y~~~ 146 (464)
....++...+.+++.+.+|.+... ....=++|+|+++++..++.+..+ .| . .|++.+-+|...
T Consensus 75 P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~ 154 (373)
T PF00282_consen 75 PAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSI 154 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THH
T ss_pred cccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHH
Confidence 345788888999999887743111 123567999999999888765421 12 2 466666678778
Q ss_pred hhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEE
Q 037587 147 DRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIV 226 (464)
Q Consensus 147 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI 226 (464)
..++..+ |+.++.||+++ ++.+|+++|++.+++..+.+..+-+|+.+-....||.+ +++++|.++|+++++|+.
T Consensus 155 ~Kaa~~l-Glg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~---D~l~~i~~i~~~~~~wlH 228 (373)
T PF00282_consen 155 EKAARIL-GLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI---DPLEEIADICEKYNIWLH 228 (373)
T ss_dssp HHHHHHT-TSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB----SHHHHHHHHHHCT-EEE
T ss_pred HHhccee-eeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccc---cCHHHHhhhccccceeee
Confidence 8888877 99999999985 56899999999998876665555566667778899998 788999999999999999
Q ss_pred EeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHH-HHHHhccc---
Q 037587 227 SDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVS-AATKMSSF--- 302 (464)
Q Consensus 227 ~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~-~~~~~~~~--- 302 (464)
+|.+|++..+-.+ .+.....-++ ...-+..+++|.++ ....+|+++.+++.... .+.....|
T Consensus 229 VDaA~gg~~~~~~--~~~~~~~gi~-----------~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~ 294 (373)
T PF00282_consen 229 VDAAYGGSALLSP--EYRHLLFGIE-----------RADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGN 294 (373)
T ss_dssp EEETTGGGGGGHC--TTGGGGTTGG-----------GESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-
T ss_pred ecccccccccccc--cccccccccc-----------cccccccchhhhhc-CCccceeEEeecccchHHHhccChhhhcc
Confidence 9999998433222 2222221122 12234569999997 66689999987664332 22100011
Q ss_pred --------------C-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cCCccEEEEEe
Q 037587 303 --------------G-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL-KSNAGLFCWVD 364 (464)
Q Consensus 303 --------------~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~f~~~~ 364 (464)
. ..+. ...++..++.-..+-.+.+++..+...+..+++.+.|++. ++++. ++..+ .+.++
T Consensus 295 ~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~-~vcFr 371 (373)
T PF00282_consen 295 DDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLN-IVCFR 371 (373)
T ss_dssp S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSS-EEEEE
T ss_pred cccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCce-EEEEE
Confidence 0 1222 2222222222222224445666666667778899999887 46665 44554 44443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-09 Score=99.10 Aligned_cols=311 Identities=14% Similarity=0.119 Sum_probs=176.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG 155 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g 155 (464)
..|.... ..++.+++++.+- -+-..++++|+++||+++++.... ...-.++....+|.+......-+.+
T Consensus 87 ~~~~~~p-i~~~Ae~L~s~~P--------~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~ 157 (442)
T KOG1404|consen 87 SGYLNPP-IHDLAEALVSKLP--------GDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTG 157 (442)
T ss_pred ccccCCc-HHHHHHHHHHhCC--------CCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhccccc
Confidence 3454432 4778888887763 244568999999999999987642 2223566667777665443322223
Q ss_pred cEEEEEecCCC--------------CCcccC-----HHHHHHHHHHHh-hcCCceEEEEEeCC-CCCCCC-CCCHHHHHH
Q 037587 156 VEIVPIHCSSS--------------NGFRIT-----ISALENAYQQAQ-TLNLKVKGVLITNP-SNPLGT-AMTHQELNH 213 (464)
Q Consensus 156 ~~~~~v~~~~~--------------~~~~~d-----~~~l~~~i~~~~-~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~ 213 (464)
......+.+.. +-|.-+ .+.+.+.+++.. ..++..-+.++.-+ ..-.|. -+++.-+++
T Consensus 158 ~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka 237 (442)
T KOG1404|consen 158 LSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKA 237 (442)
T ss_pred CCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHH
Confidence 33332221100 011111 233333332221 22333334455555 444454 367778999
Q ss_pred HHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHH
Q 037587 214 LINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVV 293 (464)
Q Consensus 214 i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~ 293 (464)
..+.|+++|.++|.||+..+ |+..+ .++.+- ..+.+--+-|++|.+| .|+.+|.++. .+++.
T Consensus 238 ~~~~v~k~Ggl~IaDEVqtG--fGRtG-~~wgfe-------------~h~v~PDIvTmAKgiG-nG~Pl~AVvt-t~EIa 299 (442)
T KOG1404|consen 238 AYKVVRKRGGLFIADEVQTG--FGRTG-HMWGFE-------------SHGVVPDIVTMAKGIG-NGFPLGAVVT-TPEIA 299 (442)
T ss_pred HHHHHHHcCCEEEehhhhhc--ccccc-cccccc-------------ccCCCccHHHHHhhcc-CCCcceeeec-CHHHH
Confidence 99999999999999999987 55432 333321 2245555779999999 9999999998 45566
Q ss_pred HHHHHhc-ccC--CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC--CCeee--cCCccEEEEEecC
Q 037587 294 SAATKMS-SFG--LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA--GIRCL--KSNAGLFCWVDMR 366 (464)
Q Consensus 294 ~~~~~~~-~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~--~~~~g~f~~~~l~ 366 (464)
.-+.+.. .|+ ..++++.+++.++|+--+ ++.+.++. ++.-.+|.+.|.++ +.+++ .-.-|+++-+++-
T Consensus 300 ~v~~~~~~~fnTyggnP~a~avg~aVL~Vik--ee~LqE~a---a~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V 374 (442)
T KOG1404|consen 300 DVLNQKSSHFNTYGGNPVACAVGLAVLKVIK--EENLQENA---AEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELV 374 (442)
T ss_pred HHHHhccccccccCCCchhHHHHHHHHHHHH--HHhHHHHH---HHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEe
Confidence 6555444 333 245666666666655322 22233222 22333344444433 22222 1234688878774
Q ss_pred ccc---ccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHH
Q 037587 367 HLL---VSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRI 425 (464)
Q Consensus 367 ~~~---~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l 425 (464)
... .......- .++.+-.+++|++|--|..++ +.|||+... +|+++++.+++..
T Consensus 375 ~dk~~~~pp~~~~~-~~i~~~cke~Gvlvg~g~i~G----~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 375 SDKSEPKPPATAEG-AVIGEQCKELGVLVGKGGIHG----NVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred cccCCCCCcchHHH-HHHHHHHHHhCeeeecccccc----eEEEecCCeeccHHHHHHHHHHH
Confidence 322 11111122 233344468899996665554 389998866 7999997666644
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-09 Score=103.67 Aligned_cols=289 Identities=15% Similarity=0.139 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEEEecC
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~v~~~ 164 (464)
.++.+.+.+.+.+.++ ++-+.+-+++..|++.++..+...++.+|+++++...+..+- ...++.. |...+....
T Consensus 51 ~~i~~~~~~~L~~l~~--~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~-g~~~~~~~~- 126 (365)
T PLN02452 51 LSIIQKAEADLRELLD--IPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKY-CKTNVIASG- 126 (365)
T ss_pred HHHHHHHHHHHHHHhC--CCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CCCcEEEec-
Confidence 4555555555555544 111223456778999999999999999999988887765332 2334444 653333321
Q ss_pred CCCCc--ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 165 SSNGF--RITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 165 ~~~~~--~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
+.++| .+++++++. .++++.|.+++-...||+.+. +++++. ++++|+|.+.+ +... +
T Consensus 127 ~~~~~~~~~~~~~~~~--------~~~~~~v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~Ss---~g~~--p 185 (365)
T PLN02452 127 KDEKYTKIPSVSEWEL--------TPDAKFVHICANETIHGVEFK--DYPDVG------NVPLVADMSSN---FLSK--P 185 (365)
T ss_pred CCCCCCCCCChHHcCC--------CCCCcEEEECCCCCCCcEecC--cccccC------CCeEEEECCcc---ccCc--c
Confidence 11222 345555421 236788888888889999643 233332 37899999887 5443 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH-------------HhcccCCCChHH
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT-------------KMSSFGLVSSQT 309 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~-------------~~~~~~~~s~~~ 309 (464)
.++..+ + + ...|..|.+|.+| +|+++++++.+.+... ....+++++...
T Consensus 186 -idv~~~-------------~-v-~~~saqK~lGP~G--l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~ 247 (365)
T PLN02452 186 -VDVSKY-------------G-V-IYAGAQKNVGPSG--VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFG 247 (365)
T ss_pred -cCHHHc-------------C-E-EEEecccccCCCC--eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHH
Confidence 232221 3 2 3369999999888 6888885554422111 011123344444
Q ss_pred HHHHHHHcCCchhhHH--HHHHHHHHHHHHHHHHHHHHHhC-CCee--ecC--CccEEEEEecCcccccCChhHHHHHHH
Q 037587 310 QYLLSRMLSDKKFTCN--YMKENRKRLRKRKEMLVSGLKVA-GIRC--LKS--NAGLFCWVDMRHLLVSNTFEAEKELWK 382 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~-g~~~--~~~--~~g~f~~~~l~~~~~~~~~~~~~~l~~ 382 (464)
..++..+++. +.+ -++...++.++..+++.+.|++. |+.. ..+ ...+.+.+.++.. ..+.+|.+
T Consensus 248 i~~l~~aL~~---l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~------~~~~~f~~ 318 (365)
T PLN02452 248 IYMCGLVFED---LLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS------ELEAEFVK 318 (365)
T ss_pred HHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc------hhHHHHHH
Confidence 4444444432 222 36777788888999999999885 6611 111 2445566666542 12335655
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 383 KIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+ +++|+...+|...- +.+|+|+-. ++.++++.+++.++++.+++
T Consensus 319 ~~-~~~g~~~~~G~r~~----gg~R~s~yna~~~~~v~~L~~~m~~f~~~~ 364 (365)
T PLN02452 319 EA-AKAGMVQLKGHRSV----GGMRASIYNAMPLAGVEKLVAFMKDFQAKH 364 (365)
T ss_pred HH-HHCCCcccCCcccc----CceEEECcCCCCHHHHHHHHHHHHHHHHhc
Confidence 54 68899999997542 239999966 89999999999999987764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-09 Score=115.44 Aligned_cols=275 Identities=15% Similarity=0.124 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCC--CeEEEcCCCCCChhhhccc---CCCcEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPG--DAFLLPTPYYPGFDRDLKW---RPGVEIVP 160 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~g--d~Vlv~~p~y~~~~~~~~~---~~g~~~~~ 160 (464)
.+++..||++++ ++++|+.++.|+|++...++.++ .++| ++|++++-.|+.+...++. ..|++++.
T Consensus 151 ~~~Qt~ia~LtG--------~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~ 222 (993)
T PLN02414 151 LNYQTMITDLTG--------LPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVV 222 (993)
T ss_pred HHHHHHHHHHhC--------CChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEE
Confidence 456667777765 78999999999999999888776 3444 7899999999987655432 23899998
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+.. + .. +..+..+++.+| |.+|.+. ++++|+++|+++|+++++ .+..- ....-
T Consensus 223 v~~~~~-----~------~~------~~~v~~vlvq~P-~~~G~v~---dv~~I~~~ah~~GaL~iV-aad~l-al~~l- 278 (993)
T PLN02414 223 ADEKDF-----D------YS------SGDVCGVLVQYP-ATDGEVL---DYAEFVKNAHANGVKVVM-ATDLL-ALTML- 278 (993)
T ss_pred ecchhh-----c------cc------cCceEEEEEecC-CCCeEEc---CHHHHHHHHHHcCCEEEE-EECHH-HhcCC-
Confidence 886421 1 00 113445566666 6799995 578899999999999998 43321 11111
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC---CCCccEEEEEEecCHHHHHHHH-Hhc----------------
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF---SMPGFRVGMIYSNNERVVSAAT-KMS---------------- 300 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~---g~~GlRiG~l~~~~~~~~~~~~-~~~---------------- 300 (464)
.+.. ..+..+++++..|.. |..|-+.|++.+.++. .+.+. ++.
T Consensus 279 ---~~pg-------------e~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~-~r~~PgriVG~s~d~~g~~~~~l~L 341 (993)
T PLN02414 279 ---KPPG-------------EWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEY-KRLMPGRIIGVSVDSSGKPALRMAM 341 (993)
T ss_pred ---CCHh-------------hccCcEEEECCCccccCCCCCCCCeeEEEECHHH-HhhCCCcccCcccCCCCCccccccc
Confidence 1211 225678889988886 2345568999985543 32221 000
Q ss_pred ---------ccCCCChHHHHHHHHHcCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CccEEEEEecCc
Q 037587 301 ---------SFGLVSSQTQYLLSRMLSDK---KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS-NAGLFCWVDMRH 367 (464)
Q Consensus 301 ---------~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~f~~~~l~~ 367 (464)
...+.+..+..++.+.+... .+...-+++..+++..+..++.+.|...|+++..+ ..+ -+.++++.
T Consensus 342 qtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~-~vt~~~~~ 420 (993)
T PLN02414 342 QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFD-TVKVKCSD 420 (993)
T ss_pred ccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcC-eEEEecCC
Confidence 01122221222222222110 00012255556677778888888898888776432 223 23334431
Q ss_pred ccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 368 LLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 368 ~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
..++.++|+ ++||.++... .+.+|+|+.. .++++++.+++.|..
T Consensus 421 ---------~~~v~~~L~-~~gI~l~~~~------~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 421 ---------ADAIADAAA-KVGINLRVVD------ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred ---------HHHHHHHHH-HCCCeeEEec------CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 124666664 6799876321 3469999987 689999999999874
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-09 Score=96.88 Aligned_cols=330 Identities=14% Similarity=0.173 Sum_probs=208.4
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC-----CCeEEEcCCCCCChhhh-cc
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADP-----GDAFLLPTPYYPGFDRD-LK 151 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~-----gd~Vlv~~p~y~~~~~~-~~ 151 (464)
..|..+.++..|.+++.+.++ -+.++.|.-+..|-..++..+.++ |.+.++++..|....+. .+
T Consensus 73 EAYagsrs~~~L~~avkdifG----------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~ 142 (471)
T COG3033 73 EAYAGSRSYYALADAVKDIFG----------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQ 142 (471)
T ss_pred hhhcccccHHHHHHHHHHhcC----------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHH
Confidence 358777888899999988875 245677877777777777777654 44555666666544433 34
Q ss_pred cCCCcEEEEEecCCCCC--------cccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCC
Q 037587 152 WRPGVEIVPIHCSSSNG--------FRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKR 222 (464)
Q Consensus 152 ~~~g~~~~~v~~~~~~~--------~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~ 222 (464)
.. |..++-++.++..+ ..+|++.|++.|++.... ++..|+++-- |.-.|+..|.+.++++.++|.+++
T Consensus 143 ~n-g~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~--nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ 219 (471)
T COG3033 143 IN-GATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD--NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYD 219 (471)
T ss_pred hc-CCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc--cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcC
Confidence 44 88777777653322 246899999999876433 3445555444 557889999999999999999999
Q ss_pred eEEEEeccccc-cc-cC---CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHH---HHH
Q 037587 223 IHIVSDEIYSG-TV-FD---SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNER---VVS 294 (464)
Q Consensus 223 ~~lI~Deay~~-~~-~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~---~~~ 294 (464)
+.++.|.+-.. -. |- .++..-+++.++..++- .-..-+..|.-|.- +.-+ -|+++..++. +-.
T Consensus 220 ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~-------sYaD~~~mS~KKD~-lvnm-GGfl~~~D~~~fDvy~ 290 (471)
T COG3033 220 IPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMY-------SYADGCTMSAKKDG-LVNM-GGFLCFKDDSFFDVYE 290 (471)
T ss_pred CcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHH-------hhhhhheeeccccc-eecc-ccEEEecCccHHHHHH
Confidence 99999975421 11 11 11123356666655431 01112334666653 2221 1566665542 333
Q ss_pred HHHHh-------cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCc
Q 037587 295 AATKM-------SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRH 367 (464)
Q Consensus 295 ~~~~~-------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~ 367 (464)
..+.. .+++..+.-...+++.-|.+.-- ..|++++.. ...+|.+.|.+.|+++..|.||.-++++..+
T Consensus 291 ~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~-~~yl~~Rv~----Qv~YL~~~l~~~GVpi~~paGGHavfvda~~ 365 (471)
T COG3033 291 ECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVN-FDYLAHRVA----QVQYLADGLEEAGVPIVQPAGGHAVFVDAGK 365 (471)
T ss_pred HHHhheEeeccccccCcccchhHHHHHHHHHHhcC-cHHHHHHHH----HHHHHHHHHHhcCCeeEecCCCceEEeehhh
Confidence 33332 23444555455555554543221 344555544 3467889999999999999999888888755
Q ss_pred ccccCC--hhHHHHHHHHHHHhcCeEEeCCCCCCCCC-----------CCeEEEEeec--CCHHHHHHHHHHHHHHHHhh
Q 037587 368 LLVSNT--FEAEKELWKKIIFEVGLNISPGSSCHCNE-----------PGWFRICFAN--ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 368 ~~~~~~--~~~~~~l~~~ll~~~gI~v~pg~~f~~~~-----------~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+..-. ......++..|.++.||-..--..|.... -.-+|+++.. -+.+.++-.++.++++.++.
T Consensus 366 ~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~ 445 (471)
T COG3033 366 FLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA 445 (471)
T ss_pred hcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence 432211 12334678888899999977544444311 1369999965 47899999999999988776
Q ss_pred Cc
Q 037587 433 NP 434 (464)
Q Consensus 433 ~~ 434 (464)
..
T Consensus 446 ~~ 447 (471)
T COG3033 446 ED 447 (471)
T ss_pred cc
Confidence 53
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-09 Score=115.92 Aligned_cols=270 Identities=14% Similarity=0.158 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCC--CCeEEEcCCCCCChhhhc----ccCCCcEEEE
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADP--GDAFLLPTPYYPGFDRDL----KWRPGVEIVP 160 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~--gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~ 160 (464)
++++.++++.+ +++.|+.+..+++++...++.++ ..+ +++|++++-.|+.....+ +.. |++++.
T Consensus 125 ~~Qt~la~LtG--------~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~-G~ev~~ 195 (954)
T PRK05367 125 NFQTMVADLTG--------LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPL-GIEVVV 195 (954)
T ss_pred HHHHHHHHHHC--------CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhC-CCEEEE
Confidence 45555666654 78999999999999999888776 344 489999999998876543 334 999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+. +++ . .++.++++.+| |-+|.+. ++++|++.|+++|+++++|-....+....
T Consensus 196 ~~~~~------d~~------~------~~~~~vlvq~p-~~~G~i~---d~~~i~~~ah~~Gal~~vda~~~Al~~l~-- 251 (954)
T PRK05367 196 GDAAK------ALD------H------DDVFGVLLQYP-GTSGEVR---DYTALIAAAHARGALVAVAADLLALTLLT-- 251 (954)
T ss_pred ecCcc------CCC------c------ccEEEEEEecC-CCCeeec---cHHHHHHHHHHcCCEEEEEehhhhccCCC--
Confidence 98642 111 1 15666777787 7899996 58889999999999999986442221111
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC-----CCCCccEEEEEEecCHHHHHHHH-Hhc--------------
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD-----FSMPGFRVGMIYSNNERVVSAAT-KMS-------------- 300 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~-----~g~~GlRiG~l~~~~~~~~~~~~-~~~-------------- 300 (464)
+. . ..+..++++|..|. ||-|| .|++.++++ +.+.+. ++.
T Consensus 252 ----~p----g---------e~GaDi~vgs~qkfg~P~g~GGP~--aGflavr~~-~~r~lpgrivG~s~d~~g~~~~~l 311 (954)
T PRK05367 252 ----PP----G---------EMGADIAVGSAQRFGVPMGFGGPH--AAYFAVRDA-YKRSMPGRIVGVSVDAAGNPALRL 311 (954)
T ss_pred ----Ch----h---------hcCCCEEEeeCcccCCCCCCCCCC--EEEEEECHH-HHhhCCCCeeeeecccCCCccccc
Confidence 11 1 22667888999987 54444 899988543 333221 000
Q ss_pred -----------ccCCCCh---HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-ccEEEEEec
Q 037587 301 -----------SFGLVSS---QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN-AGLFCWVDM 365 (464)
Q Consensus 301 -----------~~~~~s~---~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~f~~~~l 365 (464)
...+.|. ....++.+.+--.-+...-+++..++......++.+.|+..|+++..+. .+ -+.+++
T Consensus 312 alqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~-~~~~~~ 390 (954)
T PRK05367 312 ALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSFFD-TLTVEV 390 (954)
T ss_pred ccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCC-eEEEeC
Confidence 0011111 1111111111000011233556666777777888888887787765321 12 122333
Q ss_pred CcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHH
Q 037587 366 RHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIK 426 (464)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 426 (464)
+. ...++.++++ ++||.++.- ..+.+|+|+.. .++++++.+++.|.
T Consensus 391 ~~--------~~~~i~~~l~-~~gi~~~~~------~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 391 GG--------DAAAVLARAL-AAGINLRRV------DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred CC--------CHHHHHHHHH-HCCceeccc------cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 21 1235667765 679998421 14579999987 68999999999997
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-08 Score=98.19 Aligned_cols=332 Identities=13% Similarity=0.102 Sum_probs=186.2
Q ss_pred EEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCCh
Q 037587 39 IQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGS 118 (464)
Q Consensus 39 i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~ 118 (464)
++|+.+--.+|.+.++++-+...+- ...|...+ +++... .-..++-+.+.+.+++.++ ++-+.+=+++..|+
T Consensus 6 ~nF~aGPa~lp~~Vl~~~~~~~~~~---~~~g~si~-eisHRs--~~F~~i~~~~~~~Lr~Ll~--~P~~y~Vlfl~Ggg 77 (364)
T PRK12462 6 LNFSGGPGALPDTVLEQVRQAVVEL---PETGLSVL-GMSHRS--SWFSSLLAQAEADLRDLLG--IPDEYGVVFLQGGS 77 (364)
T ss_pred ceecCCCcCCCHHHHHHHHHHHhcc---cccCcccc-cccccc--HHHHHHHHHHHHHHHHHhC--CCCCCeEEEEeccH
Confidence 5666665556666655554443211 11111111 112121 1234455555555665554 21122234566679
Q ss_pred HHHHHHHHHHhcCCCCeEE-EcCCC-CCCh-hhhcccCCCcEEEEEecCCCCC--cccCHHHHHHHHHHHhhcCCceEEE
Q 037587 119 TAANETLMFCLADPGDAFL-LPTPY-YPGF-DRDLKWRPGVEIVPIHCSSSNG--FRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 119 ~~al~~~~~~l~~~gd~Vl-v~~p~-y~~~-~~~~~~~~g~~~~~v~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+.++..+...|+.+||+++ +...+ |+.- ...++.. | ++..+......+ ..++++.+.. +++.+.|
T Consensus 78 T~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~-g-~v~~~~~~~~~~~~~~p~~~~~~~--------~~d~~~v 147 (364)
T PRK12462 78 SLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRV-A-AMRVVWDGAASGYRTLPSLAELDW--------DARAPFR 147 (364)
T ss_pred HHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhc-C-CceEecCcCCCCCCcCCCHHHhcc--------CCCCcEE
Confidence 9999999999999999665 44444 4322 2224334 5 443333211112 2334455411 2256778
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
.+|+-...||+.++ ++...++.++|+|-+-. +... + ..+. ...++..+.-|
T Consensus 148 ~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~---~~s~--p-id~~---------------~~dvi~agsQK 198 (364)
T PRK12462 148 HYVSNETVEGLQFP--------DAAGLPDSPLIADMSSD---FMSR--P-FDVE---------------AYGMVYAHAQK 198 (364)
T ss_pred EEccCCCCceEecC--------cccccCCCeEEEEcCch---hhCC--C-CChH---------------HccEEEeeccc
Confidence 88877889999886 22223588999998876 4443 1 2211 12466789999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHH-------------HhcccCCCChHHHHHHHHHcCCchhhHH--HHHHHHHHHHHHH
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAAT-------------KMSSFGLVSSQTQYLLSRMLSDKKFTCN--YMKENRKRLRKRK 338 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~-------------~~~~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 338 (464)
.+|.|| ++.++.+++.+.+... ....+++++...-.++..+++.-. ++ -++.+.++.+++.
T Consensus 199 nlgP~G--ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~--~e~GGl~~~~~r~~~ka 274 (364)
T PRK12462 199 NLGPAG--VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR--DEIGGVHAMRDINARKA 274 (364)
T ss_pred cCCCCc--eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH--HhccCHHHHHHHHHHHH
Confidence 999888 4667765544322111 112233444444455444433210 22 3566777778888
Q ss_pred HHHHHHHHhCC-Ceee---c-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-
Q 037587 339 EMLVSGLKVAG-IRCL---K-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN- 412 (464)
Q Consensus 339 ~~l~~~l~~~g-~~~~---~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~- 412 (464)
+.+++.+.+.. +... + ..+-+-+.++++.. ..+.+|...+ +++|+...-|..- -|.+|+|+-.
T Consensus 275 ~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~------~l~~~f~~~a-~~~gl~~lkGhr~----vgg~Ras~yna 343 (364)
T PRK12462 275 AMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQP------RLDTLFKEQS-TEAGFCGLSGHRS----IGGIRASLYNA 343 (364)
T ss_pred HHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCH------HHHHHHHHHH-HHCCCccccCCcc----cCceEEEcCCC
Confidence 88999998873 3222 1 22344555565431 2233455554 6789998776542 4569999976
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 037587 413 ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 413 ~~~e~l~~~l~~l~~~l~~~ 432 (464)
++.|.++.+++-++++-+++
T Consensus 344 ~~~e~v~~L~~fm~~f~~~~ 363 (364)
T PRK12462 344 VSEQAVSRLCAFLKDFAIRH 363 (364)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 88999999999999887654
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.4e-08 Score=89.54 Aligned_cols=291 Identities=15% Similarity=0.162 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc------C--CC--CeEEEcCCCCCChhhhcccCCCc
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA------D--PG--DAFLLPTPYYPGFDRDLKWRPGV 156 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~------~--~g--d~Vlv~~p~y~~~~~~~~~~~g~ 156 (464)
..+-...++++...+ ..+.|+.+|.+.|+...++.... + |. ..|+....+|.+-.-.+-.+ +.
T Consensus 100 nd~~~~f~~~vt~lf------~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~-s~ 172 (427)
T KOG1402|consen 100 NDVLGEFAEYVTKLF------GYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISL-ST 172 (427)
T ss_pred hhhHHHHHHHHHHhc------CcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEe-cC
Confidence 334444555555443 35678888888999998876642 1 22 34555555554322111111 11
Q ss_pred E--------------EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHH-HHHHHHHHHhh
Q 037587 157 E--------------IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQ-ELNHLINFSKS 220 (464)
Q Consensus 157 ~--------------~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~-~l~~i~~~~~~ 220 (464)
+ +..+|.. |.++|+.++++ +++++++ .-| +-..|.+.|+. -++++.++|.+
T Consensus 173 d~ds~~~fgp~~P~~~~~v~Y~-------d~eale~~l~~-----~~vaaFi-vEPIQGEaGVvvP~~GYL~~vreLCtk 239 (427)
T KOG1402|consen 173 DPDSWDGFGPFLPGVVDKVPYG-------DAEALEVALKS-----PNVAAFI-VEPIQGEAGVVVPPPGYLKKVRELCTK 239 (427)
T ss_pred CcchhhccCCCCCCcceeeccC-------CHHHHHHHhcC-----CCeeEEE-eeccccccceEeCCchhHHHHHHHHHh
Confidence 1 1222221 68899988875 4666544 456 77888776554 69999999999
Q ss_pred CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh
Q 037587 221 KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM 299 (464)
Q Consensus 221 ~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~ 299 (464)
|++++|.||+..++.-.+. +... .+ .+ ..+.++ -|.|+++ .| +.+..+++.++ +.-.++..
T Consensus 240 ynvl~I~DEvQTGl~RTGk---~la~-d~-en--------v~PDiv---ilgKalS-GG~~Pvsavl~~~~-im~~~~pg 301 (427)
T KOG1402|consen 240 YNVLLIADEVQTGLARTGK---LLAC-DY-EN--------VRPDIV---ILGKALS-GGVYPVSAVLADDD-IMLNIKPG 301 (427)
T ss_pred hcEEEEehhhhhcccccCc---EEEe-eh-hh--------cCCCeE---EEecccc-CCeeeeEEEEecHH-HHhccCCC
Confidence 9999999999987543332 1110 11 11 112333 3578886 55 67777787443 33323322
Q ss_pred --cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC------CeeecCCccEEEEEecCccccc
Q 037587 300 --SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG------IRCLKSNAGLFCWVDMRHLLVS 371 (464)
Q Consensus 300 --~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g------~~~~~~~~g~f~~~~l~~~~~~ 371 (464)
.+.+..+++..+++.++|+--. ++ .+.++-++.-..|...|.++. +...... |++.-+.+.....
T Consensus 302 eHgsTyggNpLg~~vaiAalevi~--ee---kL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGr-Gl~~ai~i~~~~~- 374 (427)
T KOG1402|consen 302 EHGSTYGGNPLGCAVAIAALEVIV--EE---KLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGR-GLLNAIVINPSKT- 374 (427)
T ss_pred ccccccCCChHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHhccccccchhheeecc-ceEEEEEeccccc-
Confidence 2223467777777776665321 12 223333444555666666652 2333333 5777666643211
Q ss_pred CChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 372 NTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 372 ~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
...++.++|..+ +++|++..|.. .+-+|++... +++++++++++.|.+.+.
T Consensus 375 -~~~~aw~~cl~l-k~~g~LAkptH------~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 375 -SGQDAWDVCLAL-KENGLLAKPTH------GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred -cchhHHHHHHcc-cccccccCCCC------CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 113455666665 68899988764 4479999876 799999999999998764
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.9e-08 Score=91.35 Aligned_cols=288 Identities=15% Similarity=0.077 Sum_probs=159.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCC------C--CeEEEcCCCCCChhhhcccCCCcEEEEEecCCC-CC----cccCHH
Q 037587 108 DPNKLVLTAGSTAANETLMFCLADP------G--DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS-NG----FRITIS 174 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~~------g--d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~-~~----~~~d~~ 174 (464)
..+.|.+.|++|+|+..++....+- - ..|+....+|++-.-.+...++.....+|.++- .+ -.-|..
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t 194 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDST 194 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHH
Confidence 6789999999999999998874321 1 248888888876433322211332233322110 00 011678
Q ss_pred HHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhcc
Q 037587 175 ALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDR 253 (464)
Q Consensus 175 ~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~ 253 (464)
.+++.++.. ...+.+||+---.--.|.. ..++.+..|.+.|+++++++|.||+..++.-.+. .-..+++.
T Consensus 195 ~l~k~~~~h---~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~----~~a~e~~~-- 265 (433)
T KOG1401|consen 195 ALEKLFESH---KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGY----GWAQEYFG-- 265 (433)
T ss_pred HHHHHHHhC---CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccch----HHHHHHhC--
Confidence 888888762 2246666665224555543 5678899999999999999999999987532222 11111211
Q ss_pred CcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-----cCCCChHHHHHHHHHc---CCchhhHH
Q 037587 254 NIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-----FGLVSSQTQYLLSRML---SDKKFTCN 325 (464)
Q Consensus 254 ~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l---~~~~~~~~ 325 (464)
.+--+.++.|.+| .|+.+|..++ ++.+...+....+ .++.++++..++...+ .++++
T Consensus 266 ----------~~PDI~t~aK~L~-gGlPigA~~v-~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~--- 330 (433)
T KOG1401|consen 266 ----------VTPDITTVAKPLG-GGLPIGATGV-RDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPET--- 330 (433)
T ss_pred ----------cCCcceeehhhcc-CCceeEEEee-hHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHH---
Confidence 1223569999998 9999999998 4445555433222 1235666666655544 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHH---hcCeEEeCCCCC
Q 037587 326 YMKENRKRLRKRKEMLVSGLKVAG--IRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIF---EVGLNISPGSSC 398 (464)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~~g--~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~---~~gI~v~pg~~f 398 (464)
++++.+.-+..++.+.+.+.+.. +... -..|+++.+.+...... +.-.....+...+.. +.||.++|-
T Consensus 331 -~k~vs~~~k~L~~~l~e~~~~~~~~i~g~-~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~--- 405 (433)
T KOG1401|consen 331 -LKNVSKIGKELRKLLDEYLKKTPNSICGG-VGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRIAPI--- 405 (433)
T ss_pred -HHHHHHHHHHHHHHHHHHhccCCCceeee-eeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccceEEEecc---
Confidence 44444444555555777776642 2221 23345554443221111 000011111111111 124444440
Q ss_pred CCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 399 HCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 399 ~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
+ -+++. .++|.++++++.+.+.+...
T Consensus 406 ------~-~l~~~-~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 406 ------Y-LLTVE-HTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred ------c-ccccc-CcHHHHHHHHHHHHHHHHHh
Confidence 0 12222 25899999999999887754
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.13 E-value=8e-09 Score=101.23 Aligned_cols=252 Identities=13% Similarity=0.061 Sum_probs=141.1
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...++|+..+ .+.+ ..|.+.+++++... ............+.+.++++.+.+..+
T Consensus 9 ~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~-------------~~~~~~~~~~~~~~~~~la~~L~~~~p-- 73 (339)
T PF00202_consen 9 YLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQAN-------------KLNYVSFSGFTHPEAAELAEKLAELFP-- 73 (339)
T ss_dssp EEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHH-------------HCSSCSTTTSEEHHHHHHHHHHHHHSS--
T ss_pred EEEECCCCEEEECCCCccceecCCCccccchhHHHHhh-------------hcccccccceeccchhhhhhhhhhccc--
Confidence 4444556678999754 3344 34677777766422 122222223346677777777776542
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc-------C-CCCeEEEcCCCCCChhhhccc------------CCCcEEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA-------D-PGDAFLLPTPYYPGFDRDLKW------------RPGVEIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~-------~-~gd~Vlv~~p~y~~~~~~~~~------------~~g~~~~~v~~~ 164 (464)
-..+.++++++++++++.+++... . .-.+|+...-+|++....... .....+..+|.+
T Consensus 74 --~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~ 151 (339)
T PF00202_consen 74 --GGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFP 151 (339)
T ss_dssp --TTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETT
T ss_pred --cccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCC
Confidence 245689999999999999998765 1 236899988888764321111 001234555543
Q ss_pred CCCC---cccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 165 SSNG---FRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 165 ~~~~---~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
.... ..-..+.+++.+.+. ...++.+|++. | ..-.|. ..+.+.+++|.++|+++|+++|.||++.++.-.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~--~~~~iaavivE-Pi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~ 228 (339)
T PF00202_consen 152 DPAADEEEQACLNALEELIAAL--NADEIAAVIVE-PIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK 228 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH--HGGGEEEEEEE-SSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS
T ss_pred ccchhhhHHHHHHHHHHHHHhh--cCCcEEEEEEe-ccccccCccccccchhhehcccccccccceecccccccccccCC
Confidence 1100 000112233333322 23466655554 5 344564 45677899999999999999999999998532222
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHHc
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRML 317 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l 317 (464)
. ... +... ..+.++ +++|.++ .|+.+|.++++ +.+.+.+.. ....+..++++..++.+.|
T Consensus 229 --~-~a~-~~~g---------v~PDiv---~~gK~l~-gG~p~sav~~~-~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l 290 (339)
T PF00202_consen 229 --F-FAS-EHYG---------VDPDIV---TFGKGLG-GGLPISAVLGS-EEIMEAFQPGSHGSTFGGNPLSCAAALATL 290 (339)
T ss_dssp --S-SGH-HHHT---------SSSSEE---EEEGGGG-TTSSEEEEEEE-HHHHTTSCTTSSTCTTTT-HHHHHHHHHHH
T ss_pred --c-cce-eccc---------ccCccc---ccccchh-hhhhccccccc-chhhccccccccccccccchHhhhhhhhHH
Confidence 2 111 1111 123333 5679998 88999999984 444443322 1122334566666666555
Q ss_pred C
Q 037587 318 S 318 (464)
Q Consensus 318 ~ 318 (464)
+
T Consensus 291 ~ 291 (339)
T PF00202_consen 291 E 291 (339)
T ss_dssp H
T ss_pred H
Confidence 4
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9e-09 Score=97.17 Aligned_cols=311 Identities=15% Similarity=0.180 Sum_probs=179.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEE
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIV 159 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~ 159 (464)
|+...-+.++.+.||+|++ ..+.|+...| -..+..++.++++.||.|.+.+-........++.. .-.+.
T Consensus 135 YGt~DvHldlE~~iakF~G---------~E~aivYs~g-F~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlS-RS~i~ 203 (467)
T KOG1358|consen 135 YGTIDVHLDLEKRIAKFMG---------TEDAIVYSYG-FSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLS-RSTIS 203 (467)
T ss_pred cccceeecccHHHHHHhhC---------Ccceeeeccc-cchhhhcchhhhccCcEEEEehhhhHHHHHHHhhh-hheeE
Confidence 6665567889999999997 4566666555 45677788999999999998887665555555443 44455
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHh----hcCC--ceEEEEEeC-CCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 160 PIHCSSSNGFRITISALENAYQQAQ----TLNL--KVKGVLITN-PSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 160 ~v~~~~~~~~~~d~~~l~~~i~~~~----~~~~--~~~~vil~~-P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
.+.- -|.+.++..+.+.. +... .++-.++.. ---+||.+.+ +.+|+++..++..-+|+||.|+
T Consensus 204 ~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~S 273 (467)
T KOG1358|consen 204 YFKH-------NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLS 273 (467)
T ss_pred EecC-------CCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccc
Confidence 4442 24566655543321 1111 223334333 3567999876 6667888889999999999998
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--c-C--CCCh
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--F-G--LVSS 307 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~-~--~~s~ 307 (464)
-...+..+......... +..+-.++++|++-+++..| |+.++ +..+.. .+++.. + + ..++
T Consensus 274 fG~lg~~GrGvteH~~v----------~~~~iDiv~~sm~~alas~G---gFc~G-~~~i~~-hQrLSg~~Y~fSAslPp 338 (467)
T KOG1358|consen 274 FGVLGKTGRGVTEHFGV----------PITDIDIVTASMETALASGG---GFCAG-KSFIAD-HQRLSGSGYCFSASLPP 338 (467)
T ss_pred cccccccCccccccCCC----------CccceeeeeecccccccccC---ceeec-ceeeEe-eeeccccceeeeccCch
Confidence 43333321111111111 12356678899999987556 77777 443332 222222 1 1 1223
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccccCC--hhHHHHHHHHH
Q 037587 308 QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNT--FEAEKELWKKI 384 (464)
Q Consensus 308 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~--~~~~~~l~~~l 384 (464)
....++..++.-.++ -.+..+.++.....+...|... ++.+....-...+.+.+........ ..--.+++...
T Consensus 339 ~la~aa~~ai~i~~~----~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~ 414 (467)
T KOG1358|consen 339 YLAGAAIKAILIEEW----NPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKC 414 (467)
T ss_pred hhhhhHHHHHHHHhh----CcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHH
Confidence 333333333332221 2233445555556666777665 5666554444456666654322221 11122445555
Q ss_pred HHhcCeEEeCCCCCCC----CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 385 IFEVGLNISPGSSCHC----NEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~----~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+.+ |+++.....--. .-+-.+||++.. .++|+++++.+.|++....
T Consensus 415 i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 415 IAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred Hhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 555 888765443211 112359999977 8999999999999987654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.2e-07 Score=93.22 Aligned_cols=201 Identities=17% Similarity=0.211 Sum_probs=133.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC----C-----------------------
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD----P----------------------- 132 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~----~----------------------- 132 (464)
|....+...+.+.+.+++.+..|. +...=.+|+|+|+++..++.+... |
T Consensus 115 ~e~SP~~t~lE~~vi~~la~l~G~----~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~ 190 (608)
T TIGR03811 115 YESSPATSQMEEEVGKEFATLMGY----KNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMP 190 (608)
T ss_pred cccCchHHHHHHHHHHHHHHHhCC----CCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccc
Confidence 333445678888888998888773 333445889999988876655311 0
Q ss_pred -------------------------C------CeEEEcCCCCCChhhhcccCCCc---EEEEEecCCCCCcccCHHHHHH
Q 037587 133 -------------------------G------DAFLLPTPYYPGFDRDLKWRPGV---EIVPIHCSSSNGFRITISALEN 178 (464)
Q Consensus 133 -------------------------g------d~Vlv~~p~y~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~ 178 (464)
| .+|+++.-.|..+..++..+ |+ .++.+|++ .++.+|+++|++
T Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il-GlG~~~vv~VpvD--~~~rmd~~~L~~ 267 (608)
T TIGR03811 191 TKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII-GIGLDQVIPVPVD--SNYRMDINELEK 267 (608)
T ss_pred cccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc-CCCcccEEEeecC--CCCcCCHHHHHH
Confidence 0 05788888787788888776 88 58899987 467899999999
Q ss_pred HHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCe--EEEEeccccccc---cCCCCCCcc---------
Q 037587 179 AYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI--HIVSDEIYSGTV---FDSPSSSFI--------- 244 (464)
Q Consensus 179 ~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~--~lI~Deay~~~~---~~~~~~~~~--------- 244 (464)
.|++..+.+..+-+|+-+-....+|.+=+.+++.+|++.++++|+ ++.+|.||+++. +..+...+.
T Consensus 268 ~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~ 347 (608)
T TIGR03811 268 IIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVH 347 (608)
T ss_pred HHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccc
Confidence 998766666566667777778999999665555555554477887 699999999842 211100000
Q ss_pred ---------------chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHH
Q 037587 245 ---------------SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA 296 (464)
Q Consensus 245 ---------------~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~ 296 (464)
.....+..+ ....-+.-.++|.+. ....+|.++.+++.+...+
T Consensus 348 ~~~~~f~~~~~~l~~~~~~~l~gl--------e~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~ 405 (608)
T TIGR03811 348 AEYGVFTEKKEYISREVYNAYKAI--------SEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVI 405 (608)
T ss_pred ccccccccccccccHhHHHHHhcC--------cCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHH
Confidence 011112211 123334569999875 6677999888777655543
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-07 Score=87.99 Aligned_cols=237 Identities=18% Similarity=0.230 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCCCChhhh----------ccc
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVL---TAGSTAANETLMFCLADPGDAFLLPT-PYYPGFDRD----------LKW 152 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~----------~~~ 152 (464)
+.=|+.+-+.+.+.++ .+.-++ ..++|++|..++..+++|||+++..+ .-|...... ++.
T Consensus 53 D~GRd~le~iyA~vfg------aE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e 126 (403)
T PF06838_consen 53 DIGRDKLERIYADVFG------AEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKE 126 (403)
T ss_dssp -HHHHHHHHHHHHHCT-------SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGG
T ss_pred CccHHHHHHHHHHHhC------chhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHH
Confidence 4557777777777655 232333 25789999999999999999988543 335444333 344
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhC--CeEEEEec
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSK--RIHIVSDE 229 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~--~~~lI~De 229 (464)
. |+....+++.+++ .+|.+.++++++. ++|+|++.-. .--+=..++.++++++++++++. ++++++|.
T Consensus 127 ~-Gi~Y~~v~L~~dg--~~D~~~i~~~~~~------~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDN 197 (403)
T PF06838_consen 127 F-GIKYREVPLTEDG--TIDWEAIKKALKP------NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDN 197 (403)
T ss_dssp G-T-EEEE--B-TTS--SB-HHHHHHHHHT------TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-
T ss_pred h-CceeEEEeecCCC--CcCHHHHHHhhcc------CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 5 8899999998544 6899999999985 8999988754 33333457889999999999774 79999999
Q ss_pred cccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCcc--EEEEEEecCHHHHHHHHHhcccCC---
Q 037587 230 IYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGF--RVGMIYSNNERVVSAATKMSSFGL--- 304 (464)
Q Consensus 230 ay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~Gl--RiG~l~~~~~~~~~~~~~~~~~~~--- 304 (464)
+|.+|.=..+ +.. . +..++.+|+=|..| .|+ --|||+++.+.+.....++..++.
T Consensus 198 CYGEFvE~~E---P~~---v-------------GADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e 257 (403)
T PF06838_consen 198 CYGEFVETQE---PTE---V-------------GADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYRLTAPGIGKE 257 (403)
T ss_dssp TTTTTTSSS----GGG---G-------------T-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHHHS-TTTGGG
T ss_pred CcceeccccC---ccc---c-------------chhheeccceeCCC-CCccCcCCEEechHHHHHHHHhhhcCCccccc
Confidence 9998532222 111 1 45578999999987 553 259999966555555566654431
Q ss_pred ---CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ccEEEEEecC
Q 037587 305 ---VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN----AGLFCWVDMR 366 (464)
Q Consensus 305 ---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~f~~~~l~ 366 (464)
.-........-+.-.+.. ..+--+-.-.....|+++|+++.|.. +-....+.+.
T Consensus 258 ~G~t~~~~R~~~QGlFlAP~v--------V~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~l~ 318 (403)
T PF06838_consen 258 VGATLGTNRLMFQGLFLAPHV--------VGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIELG 318 (403)
T ss_dssp SS--TTTHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE-S
T ss_pred cccCcchHHHHHhHHhhchHH--------HHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEECC
Confidence 111122222222222221 11122233445566778899888743 3344555554
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-07 Score=85.46 Aligned_cols=355 Identities=12% Similarity=0.113 Sum_probs=191.5
Q ss_pred CCCCCCCCCceEEeecccccc--cHHH-HHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 28 PYDQLHNPSGIIQMGLAENQL--SFDL-LESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~n~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
.|..+.+....+|.-.|.-+. +.|. ++....++.. +....++- ..+|.+........
T Consensus 39 QYmfDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat-----------~~tN~RFl----hd~lv~cA~~l~st----- 98 (452)
T KOG1403|consen 39 QYMFDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMAT-----------ISTNNRFL----HDELVQCARTLTST----- 98 (452)
T ss_pred ceeeccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhH-----------hcccchhh----HHHHHHHHHHHhhc-----
Confidence 355555666666655554433 3444 4444444321 12223332 24555544444431
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCCCChhhhccc------CCCc-----EEEEE-ecCC--CC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCL---ADPGDAFLLPTPYYPGFDRDLKW------RPGV-----EIVPI-HCSS--SN 167 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~------~~g~-----~~~~v-~~~~--~~ 167 (464)
.| .-+-++++|+++|+.+++++.. .+..|. ++.+..|.+.....-. ..|. +.+.+ |++. .+
T Consensus 99 lP-eLsvc~F~NSGSEANDLALRLAR~ftkhqDv-ItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrG 176 (452)
T KOG1403|consen 99 LP-ELSVCFFVNSGSEANDLALRLARNFTKHQDV-ITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRG 176 (452)
T ss_pred CC-CceEEEEecCCchhhHHHHHHHHhhcccCce-EEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccccc
Confidence 11 2346789999999999998874 444454 5555566554322110 0011 11111 1110 01
Q ss_pred Ccc-----------cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHH-HHHHHHHHhhCCeEEEEeccccccc
Q 037587 168 GFR-----------ITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQE-LNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 168 ~~~-----------~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~-l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
.|. .=.+.+++.+.+..+.+.++.+.+-.+-..=.|+++|+.. .+++++..+.+|.+.|.||+.-+
T Consensus 177 K~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvG-- 254 (452)
T KOG1403|consen 177 KFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVG-- 254 (452)
T ss_pred ccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhc--
Confidence 111 1124556666655555556655444444566777776664 88999999999999999999987
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--ccc--CCCChHHHH
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSF--GLVSSQTQY 311 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~--~~~s~~~q~ 311 (464)
|+.-+++++++.-+ +-+--+-++.|.+| .|-.++.++. .+.+.+++..- ..| +..++.+.+
T Consensus 255 FGRvG~hyWafq~y-------------~fiPDIVtmgKpmG-NGhPVa~Vat-tkeIA~Af~atgv~YFNTyGGnPVsCA 319 (452)
T KOG1403|consen 255 FGRVGSHYWAFQTY-------------NFIPDIVTMGKPMG-NGHPVAAVAT-TKEIAQAFHATGVEYFNTYGGNPVSCA 319 (452)
T ss_pred ccccchhhhhhhhh-------------ccccchheecccCC-CCCeeeEEec-cHHHHHHhccccceehhccCCCchhHH
Confidence 54333356553322 33334569999999 9999999988 56677766541 112 125666666
Q ss_pred HHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec--CCccEEEEEecCcc--cccCChhHHHHHHHHH
Q 037587 312 LLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK--SNAGLFCWVDMRHL--LVSNTFEAEKELWKKI 384 (464)
Q Consensus 312 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~--~~~g~f~~~~l~~~--~~~~~~~~~~~l~~~l 384 (464)
+..++++ ++.+ .++..++- +....+...++. ..++.. -..|+|+-+++-+. ...++.+.+.-+..+|
T Consensus 320 v~laVm~v~e~E~L-q~ha~~vG----~~L~~lL~~~k~-kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rl 393 (452)
T KOG1403|consen 320 VGLAVMRVCEDENL-QEHAQQVG----EKLEVLLRRLKQ-KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRL 393 (452)
T ss_pred HHHHHHHHHhhhhH-HHHHHHHH----HHHHHHHHHHhh-hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHH
Confidence 6555544 3332 33333333 222222222322 122221 24578999988543 2223334444566777
Q ss_pred HHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 385 IFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
-+.++|++..-. ...+-+.|-..- .+++..++.+..|.+++.-
T Consensus 394 ke~y~VLlsaDG----Ph~NilKiKPPmCFneena~e~v~~ld~iLT~ 437 (452)
T KOG1403|consen 394 KELYRVLLSADG----PHRNILKIKPPMCFNEENADEFVLGLDEILTV 437 (452)
T ss_pred HHhhhEEEecCC----CCCceeecCCCcccChhhHHHHHHHHHHHHHH
Confidence 777889986321 123444442211 3677778887777777653
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6e-07 Score=86.37 Aligned_cols=317 Identities=16% Similarity=0.213 Sum_probs=182.5
Q ss_pred ccccccCCCC---CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHH--HHHHHh-cCCC----CeEEEcCCCC
Q 037587 74 FRELALFQDY---HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANE--TLMFCL-ADPG----DAFLLPTPYY 143 (464)
Q Consensus 74 ~~~~~~Y~~~---~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~--~~~~~l-~~~g----d~Vlv~~p~y 143 (464)
+..++-|.|. +|+.++...+.++|.+..| .+.-.+-..+|++.=.. ++++++ -..| +.+|+|+-.+
T Consensus 92 f~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG----~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAH 167 (496)
T COG1003 92 FANIHPFQPEEQVQGYLELIYELQEWLKEITG----MDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAH 167 (496)
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHhcC----CceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeecccc
Confidence 3455555543 5788899999999988765 33333334455544332 223333 2233 6899999988
Q ss_pred CChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCe
Q 037587 144 PGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223 (464)
Q Consensus 144 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~ 223 (464)
+.-...+... |.+|+.|++++++ .+|+++|++.+.+ ++.++.++|| |-.|.. .+.+++|+++..++|.
T Consensus 168 GTNPASAam~-G~~VV~V~~~~~G--~VDlddLk~k~~~------~~AalMiTnP-sT~GvF--E~~I~ei~~ivH~~Gg 235 (496)
T COG1003 168 GTNPASAAMA-GFKVVVVKCDENG--NVDLDDLRAKAED------NLAALMITNP-STLGVF--EEDIREICEIVHEAGG 235 (496)
T ss_pred CCChhhHhhc-CceEEEEecCCCC--CccHHHHHHHhcc------ceeEEEeccC-cccccc--hhhHHHHHHHHHHcCC
Confidence 8655555554 9999999998644 6999999998875 8999999999 556754 4679999999999999
Q ss_pred EEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC----ccEEEEEEecCHHHHHHHHH-
Q 037587 224 HIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP----GFRVGMIYSNNERVVSAATK- 298 (464)
Q Consensus 224 ~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~----GlRiG~l~~~~~~~~~~~~~- 298 (464)
.+..|.+-..-..+-. . +. +-+-.++=--++|+|..| |-..|=|.. .+.+...+..
T Consensus 236 ~vY~DGANlNA~vG~~--r-PG---------------d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgV-k~~L~pfLP~p 296 (496)
T COG1003 236 QVYYDGANLNAIVGLA--R-PG---------------DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGV-KAHLAPFLPGP 296 (496)
T ss_pred EEEecCcchhhhhccc--c-cc---------------ccccceEEeecccccccCCCCCCCCCCceeh-HhhccccCCCC
Confidence 9999988754333321 0 00 112223233667777432 333443332 1222111110
Q ss_pred ---------------------hcccCCCChHH--HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec
Q 037587 299 ---------------------MSSFGLVSSQT--QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK 354 (464)
Q Consensus 299 ---------------------~~~~~~~s~~~--q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 354 (464)
...++...++. ..+-..++... -+++.-+.---+..++.+.|+.. .+.+.+
T Consensus 297 ~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~-----GL~~ase~AvLNANYia~rL~~~y~~~y~~ 371 (496)
T COG1003 297 VVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGAD-----GLKQASEVAVLNANYIARRLKGYYPVPYTG 371 (496)
T ss_pred cccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHHHHHHHhhhcCccccCC
Confidence 11111111111 11122222222 23333333333557788888763 232222
Q ss_pred C--CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 355 S--NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 355 ~--~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
. ... =+.++......... ....+++++|+ ++|+.- |.-+|...-.+.+=|=.+- .+++++++++++|.++.++
T Consensus 372 ~~~~~H-E~ild~r~l~~~~G-v~~~DvAKrLl-D~GfHa-PT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E 447 (496)
T COG1003 372 ENRVAH-ECILDARPLKKETG-VRALDVAKRLL-DYGFHA-PTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE 447 (496)
T ss_pred CCccee-EEEeechHhHhhcC-CcHHHHHHHHH-hcCCCC-CcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 121 12244432221111 23446889988 679885 6666764445666665544 5789999999999998877
Q ss_pred hCc
Q 037587 432 CNP 434 (464)
Q Consensus 432 ~~~ 434 (464)
.+.
T Consensus 448 a~~ 450 (496)
T COG1003 448 ADA 450 (496)
T ss_pred HHh
Confidence 764
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-06 Score=79.01 Aligned_cols=302 Identities=18% Similarity=0.173 Sum_probs=165.8
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCC----cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh-hcccCCCc---
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPN----KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR-DLKWRPGV--- 156 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~----~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~-~~~~~~g~--- 156 (464)
|-.++...+-.+-+++.=.-..++|+ ||-.-+|+. |+..+..+++.|+++|.-.+.-.+++.. ....- +.
T Consensus 79 GGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSP-ANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~-~kkIS 156 (477)
T KOG2467|consen 79 GGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSP-ANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTP-TKKIS 156 (477)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCc-hhhHHHhhhcCCCCeeeeccCCCCCccccccccC-Cceee
Confidence 33555555444333221000125665 566666665 6667778999999998855443332211 11111 11
Q ss_pred ------EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecc
Q 037587 157 ------EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEI 230 (464)
Q Consensus 157 ------~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Dea 230 (464)
+-.++.++++.+ -+|.|.|++....+ ++++||.- - .-....++..++++ +|.+.|.+++.|-+
T Consensus 157 a~SiyFeSmPYkv~~~TG-~IDYD~Le~~A~~f-----rPk~iiaG-~-SaY~R~~DYaR~R~---Iad~~gA~Lm~DMA 225 (477)
T KOG2467|consen 157 ATSIYFESMPYKVDPSTG-YIDYDKLEKTATLF-----RPKLIIAG-T-SAYSRLIDYARFRK---IADKVGAYLMADMA 225 (477)
T ss_pred eeeeecccCceeeCCCCC-ceehHHHHHHHHhc-----CCcEEEec-c-ccchhhccHHHHHH---HHHhcCceeehhhh
Confidence 122344555554 47999999987765 88865542 1 22223444445544 55577899999999
Q ss_pred ccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecC-----------H---HHHHHH
Q 037587 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNN-----------E---RVVSAA 296 (464)
Q Consensus 231 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~-----------~---~~~~~~ 296 (464)
+........ ..++..++ ..|+..|.+|.+ -|-|-|.|.-+. + ++.+.+
T Consensus 226 HISgLVAA~--vipsPFey--------------~DiVTTTTHKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kI 287 (477)
T KOG2467|consen 226 HISGLVAAG--VIPSPFEY--------------CDIVTTTTHKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKI 287 (477)
T ss_pred hHHHHHhcc--cCCCcccc--------------cceeeccccccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhh
Confidence 964333322 22232222 447788999986 788888876432 1 112222
Q ss_pred HHhccc---CCCChHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCccEEEEEecCcc-
Q 037587 297 TKMSSF---GLVSSQTQYLLSRMLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-SNAGLFCWVDMRHL- 368 (464)
Q Consensus 297 ~~~~~~---~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~f~~~~l~~~- 368 (464)
+...-+ +.+......+++.+|. .++| .+..++..++.+.|.+.|.+.|.++.. ...+..+.+++...
T Consensus 288 NfaVFP~lQGGPHNhtIaalAvALkQa~tpef-----k~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G 362 (477)
T KOG2467|consen 288 NFAVFPGLQGGPHNHTIAALAVALKQAMTPEF-----KEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKG 362 (477)
T ss_pred hhhccccccCCCCcchHHHHHHHHHhhCCHHH-----HHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccC
Confidence 211111 1111222333333333 3454 334445556778889999999998764 34466778888653
Q ss_pred cccCChhHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeecC-----CHHHHHHHHHHHHHHHH
Q 037587 369 LVSNTFEAEKELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFANI-----TEETLQVALQRIKVFAQ 430 (464)
Q Consensus 369 ~~~~~~~~~~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~~-----~~e~l~~~l~~l~~~l~ 430 (464)
.++. -++++++..+|... ||..-. ..++.+||....+ -++++++..+-|.++++
T Consensus 363 ~dGa-------rvE~vle~~~I~~NKNtvpGD~Sa-l~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 363 VDGA-------RVEKVLELCHIALNKNTVPGDKSA-LSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred CchH-------HHHHHHHHhhhhhcCCcCCCCccc-cCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 3332 23444544555543 444322 2467799976442 47888887777776654
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.5e-06 Score=76.50 Aligned_cols=292 Identities=14% Similarity=0.110 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCC-CCChhhhcccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD--PGDAFLLPTPY-YPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~-y~~~~~~~~~~~g~~~~~v~~ 163 (464)
-++-+.|...+....| ..+.+++++++++-.++.++.+.++ +|++|++++-. |+.=...+.- -+++...-.
T Consensus 75 ~~lp~~lgdklApLiG----A~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g--~~~~~~~~~ 148 (407)
T COG3844 75 FDLPERLGDKLAPLIG----ARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEG--LADLLGIGY 148 (407)
T ss_pred hhchhHHHHHhhhhhc----CCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcc--hhhhhcccc
Confidence 3444445555443323 6789999999999999998888754 47888877643 4321111110 111211111
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
+- ...+.++++++++.+ ++.+|++++.+--||+.++ +.+|-.++.++|++++.|-+++...+.
T Consensus 149 ~~--~~~~~P~~~~~~~~d------d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp------ 211 (407)
T COG3844 149 DL--EGVIAPRALEEAITD------DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVP------ 211 (407)
T ss_pred cc--eeeeChHHHHHhhcc------ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCcc------
Confidence 11 122456788888765 8888888888999999974 777888889999999999999743221
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhccc--------------------
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSF-------------------- 302 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~-------------------- 302 (464)
.. + +..+..+-+++-.|-+. =||-..|..+. ++........+..+
T Consensus 212 ~~---L----------h~~gaDfaigcsyKYLNgGPGapa~l~v~-~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~ 277 (407)
T COG3844 212 VD---L----------HAAGADFAIGCSYKYLNGGPGAPAGLFVA-PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGAR 277 (407)
T ss_pred ee---e----------cccCCCeeeeeeceeccCCCCCceeEEec-cccccccccccccccCCCCcchhhhccCcCcccc
Confidence 11 1 13356677888899872 26644443333 22221111111111
Q ss_pred ----CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCC----ccEEEEEecCcccc
Q 037587 303 ----GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSN----AGLFCWVDMRHLLV 370 (464)
Q Consensus 303 ----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~----~g~f~~~~l~~~~~ 370 (464)
.+.+..+..++...|+-.. +--+.+.|+.--...+++++.++.. ++++..|. -|-.+.+.-|.
T Consensus 278 rf~~gt~~V~s~aal~~aLDifa--~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~--- 352 (407)
T COG3844 278 RFLCGTQPVLSLAALEGALDIFA--DVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH--- 352 (407)
T ss_pred ceeeCCcchhhhHHHhhhhhhhh--hcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc---
Confidence 1223344444444444222 1125566665555667777766654 44444332 12244444442
Q ss_pred cCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhC
Q 037587 371 SNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 371 ~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..++.+.| .++||..- | ..++-+|+.++- ++-+++=.+++.|.+++++.-
T Consensus 353 ------~~~V~qaL-i~rGVigD----~--R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 353 ------GYQVMQAL-IDRGVIGD----F--REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred ------HHHHHHHH-HHcCcccc----c--cCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 12355555 57899852 2 247889999975 577899999999999998653
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.1e-06 Score=89.70 Aligned_cols=259 Identities=15% Similarity=0.171 Sum_probs=152.2
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEcCCCCCChhhhcc---cCCCcEEEEEecCCCCCcccCHHHHHHHH
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLA---DPGDAFLLPTPYYPGFDRDLK---WRPGVEIVPIHCSSSNGFRITISALENAY 180 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 180 (464)
++..|.-+-.+++++-..++.+.. +++++|++++-.|+.+...++ ...|++++.++ +++|+..+
T Consensus 124 m~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~ 193 (939)
T TIGR00461 124 LPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV 193 (939)
T ss_pred CChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC
Confidence 677788888898888887776642 234789999999988775544 22388888764 33444332
Q ss_pred HHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCC
Q 037587 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260 (464)
Q Consensus 181 ~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (464)
++.++++.+| |-+|.+ +++++|+++++++|.+++++---.. .... .+..
T Consensus 194 --------~~~~v~~q~P-n~~G~i---ed~~~i~~~~h~~gal~~~~ad~~a--l~ll----~~Pg------------- 242 (939)
T TIGR00461 194 --------DVFGCLLQYP-ATDGSI---LDYKQLIDALHSHKSLVSVAADLMA--LTLL----TPPG------------- 242 (939)
T ss_pred --------CEEEEEEECC-CCCeEE---ecHHHHHHHHHHcCCEEEEEechHH--hCCc----CCHH-------------
Confidence 4567888999 678988 4789999999999999988432221 1111 1111
Q ss_pred CCCcEEEEcCCCcCCCC----CccEEEEEEecCHHHHHHHH----------------------------HhcccCC-CCh
Q 037587 261 LWSRIHIVYSLSKDFSM----PGFRVGMIYSNNERVVSAAT----------------------------KMSSFGL-VSS 307 (464)
Q Consensus 261 ~~~~vi~l~S~SK~~g~----~GlRiG~l~~~~~~~~~~~~----------------------------~~~~~~~-~s~ 307 (464)
..+-.|++ +.+|.||+ .|--.|++.++++ +.+.+. +.....+ ++.
T Consensus 243 e~GaDi~v-g~~q~fg~p~g~GGP~aG~~a~~~~-l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~ 320 (939)
T TIGR00461 243 HYGADIVL-GSSQRFGVPMGYGGPHAAFFAVKDE-YNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTA 320 (939)
T ss_pred HcCCcEEe-eCCCccCCCCCCCCCceeeeeecHh-hHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHH
Confidence 12334443 34444443 2444677766432 222210 0000010 111
Q ss_pred HHHHHHH-HH-cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEE--EEecCcccccCChhHHHHHHHH
Q 037587 308 QTQYLLS-RM-LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFC--WVDMRHLLVSNTFEAEKELWKK 383 (464)
Q Consensus 308 ~~q~~~~-~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~--~~~l~~~~~~~~~~~~~~l~~~ 383 (464)
....++. .+ +.. +-.+-+++.-++...+..++.+.|.+.|+++..+ .+|= .++++. ....++.+.
T Consensus 321 qaL~a~~a~~Y~~~--~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~-------~~~~~i~~~ 389 (939)
T TIGR00461 321 QVLLANVASSYCVY--HGPKGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGN-------GISSELLKA 389 (939)
T ss_pred HHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCC-------CCHHHHHHH
Confidence 1111111 11 111 1133456666666777788899999999887543 3442 233321 012246666
Q ss_pred HHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHH
Q 037587 384 IIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIK 426 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 426 (464)
++ ++||.++.. ..+.+++|+.. .++++++.+++.+.
T Consensus 390 ~~-~~gi~l~~~------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 390 AE-EFNINLRAV------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred HH-HCCCeeeec------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 65 679998752 24579999977 68899999999885
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-06 Score=79.62 Aligned_cols=298 Identities=15% Similarity=0.147 Sum_probs=154.4
Q ss_pred CcEEEeCChHH-HHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCC-CCcccCHHHHHHHHHHHhh
Q 037587 110 NKLVLTAGSTA-ANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS-NGFRITISALENAYQQAQT 185 (464)
Q Consensus 110 ~~i~it~G~~~-al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~ 185 (464)
...++.+.+|. .+.+.+.++. ..++.|+.+.-.+....-++... |.+++.++...+ +....|++.+++.+++.
T Consensus 75 ~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~A-Gl~~~vV~~~~~~d~l~td~~~ie~~i~~~-- 151 (389)
T PF05889_consen 75 KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERA-GLEPVVVENVLEGDELITDLEAIEAKIEEL-- 151 (389)
T ss_dssp CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHT-T-EEEEE-EEEETTEEEEHHHHHHHHHHHH--
T ss_pred cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhc-CCeEEEeeccCCCCeeeccHHHHHHHHHHh--
Confidence 34556655543 3334444443 45688888877655455555556 999998885322 33455688888888653
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
+....+++++.++--.|..- +++++|+++|+++|+..|+..||+- -.. ......+-.-+. ....
T Consensus 152 -G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgv---Q~~--~~~~~i~~a~~~--------GRvd 215 (389)
T PF05889_consen 152 -GADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGV---QSS--KCMHLIQQAWRV--------GRVD 215 (389)
T ss_dssp -CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT---T-H--HHHHHHHHHHHH--------STCS
T ss_pred -CCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhh---hHH--HHHHHHHHHHhc--------CCcc
Confidence 55667778887754455542 4699999999999999999999972 111 111111111111 1233
Q ss_pred EEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCC--chhhHHHHHHHHHHHHHHHHHHHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSD--KKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
+++.|+-|.| +-+..-+.+.++++..........+--...++.......++.- ..| ...+.++.+.+....+++.+
T Consensus 216 a~vqS~dkNF-~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~g~-~~ll~~r~~~f~~l~erl~~ 293 (389)
T PF05889_consen 216 AFVQSTDKNF-MVPVGGAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCTGY-GALLKERKASFPYLKERLKK 293 (389)
T ss_dssp EEEEEHHHHH-CEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeecCCCE-EecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5688999999 3443346666666655554444322211233334444444432 223 33444444444444444444
Q ss_pred HHHhCCCeeec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeE----EeCCCCCCC---C--CCCeEEEEeec-
Q 037587 344 GLKVAGIRCLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLN----ISPGSSCHC---N--EPGWFRICFAN- 412 (464)
Q Consensus 344 ~l~~~g~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~----v~pg~~f~~---~--~~~~~Ris~~~- 412 (464)
.-++.+-.+.. |.-..-+.+.++....... .+.-.+.. +|..+||. |.|+..+.- . ...|+-++-+.
T Consensus 294 ~aee~~e~ll~~p~N~is~a~tl~~l~~~~~-k~~~~lgs-~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG 371 (389)
T PF05889_consen 294 WAEEVGERLLETPRNHISMAFTLDTLYEISQ-KDGTFLGS-MLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIG 371 (389)
T ss_dssp HHHHTTEEBSSSTT-SSEEEEE-TTCCTCCS-SHHHHHHH-HHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT
T ss_pred HHHHhhhhhcCCCCCCeeEEEECccchhhcc-chhhhHHH-HHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhC
Confidence 44445544443 2222334455554322221 22223444 44566765 333322211 0 12578774443
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 037587 413 ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 413 ~~~e~l~~~l~~l~~~l~ 430 (464)
+++|+++.++++|+++++
T Consensus 372 ~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 372 MTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 799999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-05 Score=77.95 Aligned_cols=261 Identities=19% Similarity=0.246 Sum_probs=130.5
Q ss_pred CCCCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEecCCCCCcccCHHHHHHH
Q 037587 107 FDPNKLVLTAGSTAANETLMFCL---ADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIHCSSSNGFRITISALENA 179 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 179 (464)
++..|.-+-.|++.+-..++.+. -+..++|+++.-.|+.+... +... |++++.++.++.+ ..|
T Consensus 125 mdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~-g~~iv~~~~~~~~--~~d------- 194 (429)
T PF02347_consen 125 MDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPL-GIEIVEVPLDEDG--TTD------- 194 (429)
T ss_dssp SSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHC-CEEEEEE-BBTTC--SB--------
T ss_pred CCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhC-CeEEEEecccccC--Ccc-------
Confidence 55455566677776666554443 23346999999999988764 3334 8999999987533 122
Q ss_pred HHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCC
Q 037587 180 YQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259 (464)
Q Consensus 180 i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 259 (464)
+.++.+|++.+| |-.|.+ +++++|.++++++|.++++ .+.- .....- .+..
T Consensus 195 -------~~~~a~v~vq~P-n~~G~~---ed~~~i~~~~h~~gal~~~-~ad~-~aL~~l----~~Pg------------ 245 (429)
T PF02347_consen 195 -------DDDTAAVMVQNP-NTFGVF---EDIKEIADIAHAAGALVIV-GADP-NALGGL----KSPG------------ 245 (429)
T ss_dssp -------STTEEEEEEESS--TTSB-----THHHHHHHHHHTT-EEEE-CGGC-CGCCTC------GG------------
T ss_pred -------ccCeEEEEeecC-CCCceE---eeHHHHHHHHHHcCCEEEE-ecCH-HHHhCc----CChh------------
Confidence 138999999999 678988 5699999999999988875 3321 112211 1111
Q ss_pred CCCCcEEEEcCCCcCCCCC----ccEEEEEEecCHHHHHHHH----------------------------Hh--cccCCC
Q 037587 260 DLWSRIHIVYSLSKDFSMP----GFRVGMIYSNNERVVSAAT----------------------------KM--SSFGLV 305 (464)
Q Consensus 260 ~~~~~vi~l~S~SK~~g~~----GlRiG~l~~~~~~~~~~~~----------------------------~~--~~~~~~ 305 (464)
..+-.|++++ +|.||.| |--.|++.+..+ +.+.+. +- .+....
T Consensus 246 -e~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~-l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIct 322 (429)
T PF02347_consen 246 -EYGADIVVGE-HQTFGIPMGFGGPGAGFFAVRED-LVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICT 322 (429)
T ss_dssp -GGT-SEEEEC-CTTTT---CCC-S--EEEEE-GG-GGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---S
T ss_pred -hcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhh-hhhhCCCceecccccccccceeeeccccccccccccchhhhhhh
Confidence 2244455655 7777643 556788877543 222211 11 111111
Q ss_pred Ch-HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHH
Q 037587 306 SS-QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKK 383 (464)
Q Consensus 306 s~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ 383 (464)
+. +...++...+.. +-.+-+++.-+....+..++.+.|.+. +..+..+.-.-|+....+. ....++.++
T Consensus 323 nqaL~A~~a~~Yl~~--~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~-------~~~~~l~~~ 393 (429)
T PF02347_consen 323 NQALLALAAAIYLAY--LGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKD-------KEVEELLKR 393 (429)
T ss_dssp S-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS--------HHHHHHHHT
T ss_pred hHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCc-------HHHHHHHHH
Confidence 22 111122222221 114567777888888999999999986 4443322221123333221 111123333
Q ss_pred HHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHH
Q 037587 384 IIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRI 425 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l 425 (464)
.+ ..|+... ....+.+-+|+.- .++++++.+++.+
T Consensus 394 ~~-~~gl~~~------~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 394 GI-EGGLNLR------YPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp T-----EEEG------GG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred HH-hcCCCcc------ccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 33 2354332 1234578888876 5789999888764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-05 Score=74.41 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=118.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEE-----EcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHH
Q 037587 108 DPNKLVLTAGSTAANETLMFCLADPGDAFL-----LPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQ 182 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vl-----v~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 182 (464)
..+.++++|..+.++.+++.++..++..|+ ++ ++.+.....++.. |++++.+-... .-...+++.+|.+
T Consensus 82 ~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~-gg~~~v~d~~~~a-G~~l~EvG~tn----~t~~~d~~~AIne 155 (395)
T COG1921 82 GAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVE-GGAFRVPDIIRLA-GAKLVEVGTTN----RTHLKDYELAINE 155 (395)
T ss_pred chhheeeECCcHHHHHHHHhhhccCCeEEEEcccccc-CCCCChhHHHHHc-CCEEEEecccC----cCCHHHHHHHhcc
Confidence 367899999999999999999987555444 34 5666778888877 99999987542 2467889998876
Q ss_pred HhhcCCceEEEEEeCCCCC--CCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCC
Q 037587 183 AQTLNLKVKGVLITNPSNP--LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NP--tG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (464)
++++++-+.-+|- +|. ++ .++++++|+++++++|+|.+-.... +.. +.+..+++
T Consensus 156 ------~ta~llkV~s~~~~f~~~-l~---~~~l~~ia~~~~lpvivD~aSg~~v-~~e----~~l~~~la--------- 211 (395)
T COG1921 156 ------NTALLLKVHSSNYGFTGM-LS---EEELVEIAHEKGLPVIVDLASGALV-DKE----PDLREALA--------- 211 (395)
T ss_pred ------CCeeEEEEeecccccccc-cc---HHHHHHHHHHcCCCEEEecCCcccc-ccc----cchhHHHh---------
Confidence 7777766655542 222 33 5567888889999999999886532 212 22222322
Q ss_pred CCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcC
Q 037587 261 LWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLS 318 (464)
Q Consensus 261 ~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~ 318 (464)
.+..++++|-.|.+ .|.+-|.+++ +++++..+++..- ...+.....+++.++|+
T Consensus 212 -~GaDLV~~SgdKll--gGPqaGii~G-kKelI~~lq~~~l~Ralrv~K~tla~l~~aLe 267 (395)
T COG1921 212 -LGADLVSFSGDKLL--GGPQAGIIVG-KKELIEKLQSHPLKRALRVDKETLAALEAALE 267 (395)
T ss_pred -cCCCEEEEecchhc--CCCccceEec-hHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHH
Confidence 15667889999998 5778999999 4555555544321 12345555555544443
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.8e-05 Score=71.45 Aligned_cols=179 Identities=21% Similarity=0.276 Sum_probs=114.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCC--cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-CCChhhh----------cc
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPN--KLVLTAGSTAANETLMFCLADPGDAFLLPTPY-YPGFDRD----------LK 151 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~-y~~~~~~----------~~ 151 (464)
|.+.|.+..|+-++ .+.. ..-+ -+++++|..++..+++|||..+...-. |....+. ++
T Consensus 66 GRdtLe~vyA~vf~--------aE~a~VRpq~-isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~ 136 (416)
T COG4100 66 GRDTLERVYAQVFG--------AEAALVRPQI-ISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLK 136 (416)
T ss_pred chhHHHHHHHHHhc--------cccceeeeee-ecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHH
Confidence 54556666666554 2222 2223 356789999999999999998755332 4333322 33
Q ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhC--CeEEEEe
Q 037587 152 WRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSK--RIHIVSD 228 (464)
Q Consensus 152 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~--~~~lI~D 228 (464)
.. |+....+|+..++ .+|.+.+...+++ ++|+|.+.-. .-.-=-.++.+++++++.+.++- ++++++|
T Consensus 137 df-gi~Y~~v~Lt~~g--kiD~~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVD 207 (416)
T COG4100 137 DF-GIKYKAVPLTADG--KIDIQAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVD 207 (416)
T ss_pred Hh-CcceeecccccCC--cccHHHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEe
Confidence 33 7778888887543 6899999999876 8998877643 11111136779999999998774 7999999
Q ss_pred ccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccE--EEEEEecCHHHHHHHHHhcc
Q 037587 229 EIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR--VGMIYSNNERVVSAATKMSS 301 (464)
Q Consensus 229 eay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlR--iG~l~~~~~~~~~~~~~~~~ 301 (464)
.+|.+|.-..+| .. -+..+.-+|+-|.-| .|+- -||+.+..+.+.+..-++..
T Consensus 208 NCYGEFvE~~EP---t~----------------vGaDliAGSLIKNpG-GgiaktGGYiaGk~~~ve~~~yRlTa 262 (416)
T COG4100 208 NCYGEFVEEKEP---TH----------------VGADLIAGSLIKNPG-GGIAKTGGYIAGKAELVEAAAYRLTA 262 (416)
T ss_pred ccchhhhhccCc---cc----------------cchhhhccceeeCCC-CceeeccceeechHHHHHhhceeeec
Confidence 999985333221 11 133456788888876 4432 37888865555444444433
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00035 Score=68.18 Aligned_cols=313 Identities=12% Similarity=0.169 Sum_probs=165.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCC-----C-CCCcEEEeCChHHHHHHHHHHh-------cCCC-----------C-eEEEcC
Q 037587 86 FPDAKKELVKLMARIRGNKVK-----F-DPNKLVLTAGSTAANETLMFCL-------ADPG-----------D-AFLLPT 140 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~-----~-~~~~i~it~G~~~al~~~~~~l-------~~~g-----------d-~Vlv~~ 140 (464)
..+|...+.+|+++..+.+.. . ++.-|+- ..++++...++.+. .+.+ + .+...+
T Consensus 111 ~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ-~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SD 189 (511)
T KOG0628|consen 111 CTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQ-GTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSD 189 (511)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEe-cCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecC
Confidence 467887788888876553211 0 1123333 34445544444332 1122 1 344556
Q ss_pred CCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh
Q 037587 141 PYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS 220 (464)
Q Consensus 141 p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~ 220 (464)
-++.+...++... |++...++.+. +|.++.+.|+++|++-.+.|--+ .+++.+-. -|| +-+.+++.+|..+|++
T Consensus 190 qahssveka~~i~-~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIP-f~v~at~G-TT~-~ca~D~l~elg~Vc~~ 263 (511)
T KOG0628|consen 190 QAHSSVEKACLIA-GVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIP-FFVCATLG-TTS-SCAFDELEELGPVCRE 263 (511)
T ss_pred cccchHHHhHhhc-ceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCcc-EEEEEeec-Ccc-ccccccHHHhcchhhh
Confidence 6677777666554 89999999875 89999999999998755554333 33444332 222 2345799999999999
Q ss_pred CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEec-----------C
Q 037587 221 KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSN-----------N 289 (464)
Q Consensus 221 ~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~-----------~ 289 (464)
+|+|+.+|.+|++..|.-+ ++..+..-++. ..-+-...||++ +.-.-+.-+... +
T Consensus 264 ~glWLHVDAAYAGsa~iCp--E~r~l~rGie~-----------aDSfn~n~hK~~-~vnfDCs~lWvkd~~~~~~~~~vd 329 (511)
T KOG0628|consen 264 EGLWLHVDAAYAGSAFICP--EFRYLMRGIEY-----------ADSFNFNPHKWL-LVNFDCSPLWVKDGTKLSRAFNVD 329 (511)
T ss_pred cCEEEEeehhhccccccCH--HHHHHhhcchh-----------hccccCChhhee-EEeeeeecceeecCceeeeeeecC
Confidence 9999999999997765544 33332221110 011122345543 222222222221 1
Q ss_pred H-HHHHHHH-Hhccc--CCCC------hHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-CCc
Q 037587 290 E-RVVSAAT-KMSSF--GLVS------SQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK-SNA 357 (464)
Q Consensus 290 ~-~~~~~~~-~~~~~--~~~s------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~ 357 (464)
+ .+..... ....+ |.++ ++-.......+.-..+ ++++++. .+..+.+.+.+.+- .+++.. ..-
T Consensus 330 p~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~l-q~~iR~h----~~La~~fe~lv~~d~~FE~~~~~~l 404 (511)
T KOG0628|consen 330 PLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENL-QNYIREH----VRLAKEFETLVRADPRFEIVNKRIL 404 (511)
T ss_pred hHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHH-HHHHHHH----HHHHHHHHHHhhcCCcceeeccccc
Confidence 1 1111111 11111 1111 1222223333222221 2222221 22222233322221 344432 333
Q ss_pred cEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhC
Q 037587 358 GLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 358 g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 433 (464)
| .+.+++... . ....+++.++-....|.+.|.+.- +.-.+|++++. .++++++++.+.|.+...+..
T Consensus 405 g-LvcFRlk~~---N--~~ne~Ll~~in~~g~i~l~~~~l~---gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~ 473 (511)
T KOG0628|consen 405 G-LVCFRLKGD---N--EINEALLNRLNSSGRIHLVPASLH---GKFVLRFAVCSPLTNESDIDEAWKIIFEAADELF 473 (511)
T ss_pred c-eeEEeecCC---c--HHHHHHHHHHHhcCcEEEEEeeec---ceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5 445566532 1 223468888877778999887642 24469999977 578999999988888776643
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00013 Score=70.30 Aligned_cols=293 Identities=15% Similarity=0.208 Sum_probs=162.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CC-----C-----CeEE-EcCCCCCChhhhcccCCC---cEEEEEecCCCCCcccC
Q 037587 109 PNKLVLTAGSTAANETLMFCLA--DP-----G-----DAFL-LPTPYYPGFDRDLKWRPG---VEIVPIHCSSSNGFRIT 172 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~--~~-----g-----d~Vl-v~~p~y~~~~~~~~~~~g---~~~~~v~~~~~~~~~~d 172 (464)
.|.|+--.|+...++.+..+=. -| | +-|+ +.+-+|.++..+++.+ | -.++.|++++. ..++
T Consensus 160 ~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~l-g~gtd~c~~v~t~e~--Gkm~ 236 (510)
T KOG0629|consen 160 GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFL-GLGTDHCIKVKTDER--GKMI 236 (510)
T ss_pred CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHh-ccCCceeEEeccccc--Cccc
Confidence 4666655556655555543311 01 1 3343 4455566677776665 6 46888888754 4689
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhc
Q 037587 173 ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMD 252 (464)
Q Consensus 173 ~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~ 252 (464)
+++||+.|......|..|-.|-.+.-..-.|.. +++..|+++|++|++|+.+|.+|.+...-+. .......-+.
T Consensus 237 ~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF---DdL~~iadiC~k~~lWmHvDAAwGGglLmS~--k~R~kl~Gie- 310 (510)
T KOG0629|consen 237 PDDLEKKILEAKAKGGVPFFVNATAGTTVLGAF---DDLNGIADICEKHKLWMHVDAAWGGGLLMSR--KHRHKLTGIE- 310 (510)
T ss_pred hHHHHHHHHHHHhcCCCCeEEEecCCceeeecc---CcHHHHHHHHHhcCEEEEeecccccccccCh--hhHhhccCcc-
Confidence 999999998875555444332222224566666 6799999999999999999999987433332 1112111111
Q ss_pred cCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--------cC---------------CCChHH
Q 037587 253 RNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--------FG---------------LVSSQT 309 (464)
Q Consensus 253 ~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--------~~---------------~~s~~~ 309 (464)
..--+.++.+|.+| +.+.++.++.+.+-+.+.-+.+.- ++ .+..+-
T Consensus 311 ----------ra~SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FK 379 (510)
T KOG0629|consen 311 ----------RANSVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFK 379 (510)
T ss_pred ----------ccCceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHH
Confidence 11234679999999 888888887755444333222110 00 112222
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC--eeec--CC-ccEEEEEecCcccccCC--hhHH-----
Q 037587 310 QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI--RCLK--SN-AGLFCWVDMRHLLVSNT--FEAE----- 377 (464)
Q Consensus 310 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~--~~~~--~~-~g~f~~~~l~~~~~~~~--~~~~----- 377 (464)
+..+-.+-....+ ++..+.+-+..+++.+.+++.+. .++. |+ .+.-.|. +|+.+.... .+..
T Consensus 380 lWlmwkaKG~~Gf-----e~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~-vp~~lR~~~~~~e~~~rL~k 453 (510)
T KOG0629|consen 380 LWLMWKAKGTQGF-----EAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWY-VPPSLRGWQENPERDSRLVK 453 (510)
T ss_pred HHHHHHhcccccH-----HHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeecc-CchHhccCcccchhhhHHHh
Confidence 3333333333333 44455556677889999988742 2332 44 3322333 333222111 0000
Q ss_pred --HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHH
Q 037587 378 --KELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVFA 429 (464)
Q Consensus 378 --~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l 429 (464)
-.+-..+++ .|-... |...-...+++||+.++. ++..+++-+++.|..+=
T Consensus 454 VaPkIK~~Mm~-~Gt~Mi-~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 454 VAPKIKERMMK-KGTTMI-GYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred hCcHHHHHHHh-ccceee-EecccccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 023344543 354433 111111236799999977 47889999988887653
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00089 Score=65.03 Aligned_cols=270 Identities=20% Similarity=0.251 Sum_probs=151.6
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEcCCCCCChhhhcccC---CCcEEEEEecCCCCCcccCHHHHHHHH
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLA---DPGDAFLLPTPYYPGFDRDLKWR---PGVEIVPIHCSSSNGFRITISALENAY 180 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~i 180 (464)
++-.|--+-.++|.+=..++.+.. .+..+++|+.-+|+.+...++.+ .|.+++.++.+ |++.+++.
T Consensus 135 m~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~- 206 (450)
T COG0403 135 LDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA- 206 (450)
T ss_pred CCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-
Confidence 455566666777766666655542 23589999999999888776542 15677766643 56777766
Q ss_pred HHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEe-ccccccccCCCCCCccchhhhhhccCcCCCC
Q 037587 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSD-EIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259 (464)
Q Consensus 181 ~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~D-eay~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 259 (464)
.. ..+.++++.+| |-.|... ++++++++.+++++.++++= |.-+ +. ++. ++
T Consensus 207 ~~-----~~~~gv~vQyP-~~~G~~~--~d~~~l~~~~h~~~al~~v~aDpla---L~-----------LL~------pP 258 (450)
T COG0403 207 DD-----GDVFGVLVQYP-NTFGIVE--EDLRALIEAAHSAGALVIVAADPLA---LG-----------LLK------PP 258 (450)
T ss_pred cc-----cCeEEEEEecC-CCCCccc--hhHHHHHHHHhhcCCEEEEEechhH---hh-----------ccC------Cc
Confidence 32 36788999999 4677332 67999999999998776632 1111 10 111 11
Q ss_pred CCCCcEEEEcCCCc---CCCCCccEEEEEEecCHHHHHH---------------------------HHHhcccCC-CChH
Q 037587 260 DLWSRIHIVYSLSK---DFSMPGFRVGMIYSNNERVVSA---------------------------ATKMSSFGL-VSSQ 308 (464)
Q Consensus 260 ~~~~~vi~l~S~SK---~~g~~GlRiG~l~~~~~~~~~~---------------------------~~~~~~~~~-~s~~ 308 (464)
+..+-.|++++..- -+|..|-.+||..+..+...+. +++-.-..+ ++..
T Consensus 259 Ge~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQ 338 (450)
T COG0403 259 GEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQ 338 (450)
T ss_pred cccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHH
Confidence 23356677776543 3455577788877744322111 111110111 1112
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeecCCccEEE--EEecCcccccCChhHHHHHHHHH
Q 037587 309 TQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA--GIRCLKSNAGLFC--WVDMRHLLVSNTFEAEKELWKKI 384 (464)
Q Consensus 309 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~~~g~f~--~~~l~~~~~~~~~~~~~~l~~~l 384 (464)
...+.++.+-..-+-.+-+++.-.+..+...++.+.|++. |+++... .+|- .++++. ....+++.+.
T Consensus 339 aLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~-------~~~~~l~~~~ 409 (450)
T COG0403 339 ALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPE-------EVAEALLAAA 409 (450)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecch-------hHHHHHHHHH
Confidence 1111111111000113446666677777888899999965 5766543 4553 344442 1111233333
Q ss_pred HHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 385 IFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
. ..|+-++.- .++.+-+++.- .++++++.+++.+...
T Consensus 410 ~-~~G~~L~~~------~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 410 I-AGGINLRRV------DADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred H-hcCCceeee------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 2 457776632 23356677755 4688888888877654
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00014 Score=70.93 Aligned_cols=304 Identities=13% Similarity=0.144 Sum_probs=175.4
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----C-CC---CeEEEcCCCCCChhhhcccCCCc
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA----D-PG---DAFLLPTPYYPGFDRDLKWRPGV 156 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~----~-~g---d~Vlv~~p~y~~~~~~~~~~~g~ 156 (464)
+...+..+..+.+...++.+ +...=..|.|+++++...-.... . .| ..++++...+..+...++.. ++
T Consensus 117 ~~~~~e~~~Vnm~~~L~~~~---~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf-~v 192 (491)
T KOG1383|consen 117 VVRKLEAECVNMIANLFNAP---SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYF-EV 192 (491)
T ss_pred hhHHHHHHHHHHHHHHhcCC---ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhE-EE
Confidence 34556666666666555421 11233468899999555544421 1 22 34666666676666666655 99
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh-CCeEEEEeccccccc
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS-KRIHIVSDEIYSGTV 235 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~-~~~~lI~Deay~~~~ 235 (464)
++..+|+++ ++|.+|+..+...+++ ++.+++..-|+.|+|.. +++++|.++..+ +++.+-+|.+-++|.
T Consensus 193 ~l~~V~~~~-~~~~~D~~k~~~~i~e------Nti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi 262 (491)
T KOG1383|consen 193 ELREVPLDE-GDYRVDPGKVVRMIDE------NTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFI 262 (491)
T ss_pred EEEeeeccc-cceEecHHHHHHHhcc------ceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCcccc
Confidence 999999986 7899999999999876 89999999999999998 889999999888 999999999888754
Q ss_pred cC-CCCCCccchhhhhhccCcCCCCCCCCcEEEE-cCCCcCCCCCccEEEEEEecCHHHHH-HHHH--------hcccC-
Q 037587 236 FD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIV-YSLSKDFSMPGFRVGMIYSNNERVVS-AATK--------MSSFG- 303 (464)
Q Consensus 236 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l-~S~SK~~g~~GlRiG~l~~~~~~~~~-~~~~--------~~~~~- 303 (464)
.. ... .+ ....+ ..+.|-.+ .+-+| ||+.--..||++-+++.+.. .+.- ..++.
T Consensus 263 ~p~~~~-~~-~~fdF-----------r~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~Tl 328 (491)
T KOG1383|consen 263 NPAGYL-NE-EEFDF-----------RVPGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTL 328 (491)
T ss_pred cccccc-Cc-ccccc-----------CCCCceeEeeccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCccc
Confidence 31 110 00 00001 11222222 34455 45443347888765544322 1100 01110
Q ss_pred C---CCh--HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccccCChhHH
Q 037587 304 L---VSS--QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 304 ~---~s~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~ 377 (464)
. .++ ..|.+..--+.... ..++.+.+.+....+.+.+++. ++.++....--|+...-.. .+.
T Consensus 329 ngSR~g~~va~~wa~~~~lG~eG-----Y~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~-------~~i 396 (491)
T KOG1383|consen 329 NGSRPGSQVAAQWAALMSLGEEG-----YRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSND-------VNI 396 (491)
T ss_pred ccCCcccHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCc-------cch
Confidence 0 112 23333333333333 3444555667778889999886 5665543221122221111 111
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhCc
Q 037587 378 KELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
-+ ...++++.|-.+. +-.|. ..+-|++.. ..++-.++++.-|++++++...
T Consensus 397 ~e-lsd~l~~~GW~ln-alq~P----~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 397 FE-LSDLLRKKGWILN-ALQFP----AAIHICVTRVHAREDVADRFVADIRKVVEELKS 449 (491)
T ss_pred hh-hhHHHHhcCcCcc-ccCCC----CceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence 12 3455677787764 43333 234445443 2455567788888888877663
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0007 Score=64.59 Aligned_cols=332 Identities=14% Similarity=0.115 Sum_probs=169.9
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA 116 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~ 116 (464)
.+.+||.+...+|++.+.++-+...+- -..|..-.+.-++- +-...+.+...+.+.+.++ +|-+.+=+++-.
T Consensus 5 ~~~nFsaGPa~lp~~vL~~a~~e~~~~---~g~g~svme~SHRs---k~~~~v~~~a~~~lreLl~--iPd~Y~VlflqG 76 (365)
T COG1932 5 RVYNFSAGPAALPPEVLQQAQKELLDW---NGLGMSVMEISHRS---KEFKNVLEEAEKDLRELLN--IPDDYKVLFLQG 76 (365)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhh---ccCCcceeeecccc---HHHHHHHHHHHHHHHHHhC--CCCCceEEEEcC
Confidence 346788877667776665554432111 00011111111111 1123444444444444444 333333445567
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh-cccCCCcEEEE-EecCCCCCc--ccCHHHHHHHHHHHhhcCCceEE
Q 037587 117 GSTAANETLMFCLADPGDAFLLPTPYYPGFDRD-LKWRPGVEIVP-IHCSSSNGF--RITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 117 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~~g~~~~~-v~~~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
|++....++...|+.+...-.+..-.|..+... ++.. +..+.. .+...+.+| -++++... +. .+...
T Consensus 77 Gat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~-~~~~~~~~~~~~~~~~~~iP~~~~~~--~~------~~~ay 147 (365)
T COG1932 77 GATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKV-GKQPKLIDARIEEAGYGSIPDLSKWD--FS------DNDAY 147 (365)
T ss_pred ccHHHHHHHHHhhhcccCceeEeeeehhHhHHHHHHHh-cccccccccceeccCccCCCChhhcc--cC------CCccE
Confidence 789999999999887654312333344433211 2222 321111 111111222 23333322 11 12333
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|.+|.-+.-+|+-++. ...+. .+.++|.|-.-.- +..+ .++. .-.++..|.-
T Consensus 148 v~~~~NeTi~Gv~v~~--~p~~~-----~~~~~v~D~SS~i--lsr~----iDvs---------------k~dviyagaQ 199 (365)
T COG1932 148 VHFCWNETISGVEVPE--LPDIG-----SDGLLVADASSAI--LSRP----IDVS---------------KYDVIYAGAQ 199 (365)
T ss_pred EEEecCCcccceEccC--CCCCC-----CCceEEEecccHH--hcCC----CChh---------------HcceEEEehh
Confidence 6666445677877651 11111 1267888865542 3222 2322 2235568999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHh---------------cccCCCChHHHHHHH----HHcCCchhhHHHHHHHHHH
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKM---------------SSFGLVSSQTQYLLS----RMLSDKKFTCNYMKENRKR 333 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~---------------~~~~~~s~~~q~~~~----~~l~~~~~~~~~~~~~~~~ 333 (464)
|.+|..| ++.++.++..+.+ .... ..+++++.++-+.+. .+...+. ++...++
T Consensus 200 KnlGpaG--ltvvIvr~~~l~r-~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GG-----l~~~~~r 271 (365)
T COG1932 200 KNLGPAG--LTVVIVRPDLLER-AESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGG-----LEALEAR 271 (365)
T ss_pred hccCccc--eEEEEEcHHHHhc-ccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCC-----HHHHHHH
Confidence 9999888 7888885554433 2221 223334444333322 2333343 3444555
Q ss_pred HHHHHHHHHHHHHhCCCe---ee-cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 037587 334 LRKRKEMLVSGLKVAGIR---CL-KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC 409 (464)
Q Consensus 334 ~~~~~~~l~~~l~~~g~~---~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris 409 (464)
-+++.+.|.+.+.+.++- +. ...+.+-+.+++.+. +-+..+...+ +++|+...-|.. ..+.+|++
T Consensus 272 n~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~------~ld~~fv~ea-e~~gl~~lkGhr----~vgGmRas 340 (365)
T COG1932 272 NQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDA------ELDKGFVAEA-EAAGLIYLKGHR----SVGGLRAS 340 (365)
T ss_pred HHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcH------HHHHHHHHHH-HHcCCceecccc----CCCceeee
Confidence 566778888888876542 11 234456667776631 2223455555 456777766632 34459999
Q ss_pred eec-CCHHHHHHHHHHHHHHHHhh
Q 037587 410 FAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 410 ~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+.. ++.|+++.++.-|+.+.+++
T Consensus 341 iynA~~~e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 341 IYNAVPLEDVEALTDFMDWFEETY 364 (365)
T ss_pred eecCCCHHHHHHHHHHHHHHHHhh
Confidence 987 88999999999999887765
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.8e-06 Score=79.89 Aligned_cols=212 Identities=20% Similarity=0.221 Sum_probs=45.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC---CCC---hhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHH
Q 037587 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPY---YPG---FDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQ 182 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~---y~~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 182 (464)
.+..+++|+...++.+++.+++ +|..|++..-. +++ +...++.. |++++.+-... .-.+++++++|.+
T Consensus 62 AeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip~vm~~s-Ga~lvEVGttN----~t~~~Dye~AI~e 135 (367)
T PF03841_consen 62 AEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIPDVMRQS-GARLVEVGTTN----RTHLSDYEKAITE 135 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccccccc-ccccccccccc----ccccccccccccc
Confidence 4567788888889999988886 45566655322 121 33455555 99998887642 2357888888876
Q ss_pred HhhcCCceEEEEEeCCCCCC--CCCCCHHHHHHHHHHHhhCCeEEEEeccccccc----cCCCCCCccchhhhhhccCcC
Q 037587 183 AQTLNLKVKGVLITNPSNPL--GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV----FDSPSSSFISIMEAVMDRNID 256 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NPt--G~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~----~~~~~~~~~~~~~l~~~~~~~ 256 (464)
++.+++..+++|.. |.. ..-.++++++++++|++++|+|-.-+.+. |+-+ .-+++...+.
T Consensus 136 ------~Ta~ll~Vh~Sn~~i~GFt-~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~--~Ep~v~~~~~----- 201 (367)
T PF03841_consen 136 ------NTAALLKVHTSNFRIQGFT-GEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLP--DEPTVQEYLA----- 201 (367)
T ss_dssp --------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT------------CCC-----
T ss_pred ------ccccccccccccccccccc-ccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCc--cccHHHHHhh-----
Confidence 88888889988863 222 11258888999999999999997663221 1111 1123333322
Q ss_pred CCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcC---Cchh------hHH
Q 037587 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLS---DKKF------TCN 325 (464)
Q Consensus 257 ~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~---~~~~------~~~ 325 (464)
.+..+++.|-.|.+| |-..|.|++. +.+++.+++..-. .-+.-...+++.+.|+ +++. ..+
T Consensus 202 -----~GaDlV~fSGdKlLG--GPQaGiI~Gk-k~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ 273 (367)
T PF03841_consen 202 -----AGADLVTFSGDKLLG--GPQAGIIVGK-KELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLR 273 (367)
T ss_dssp -----CT-SEEEEETTSSSS--S-S-EEEEEE-HHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH---------------
T ss_pred -----cCCCEEEEECCCcCC--CCCeEEEEeC-HHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 256678889999985 5568999994 5555555543221 2244455544444333 1110 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 037587 326 YMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.+....+.++++.+.+...|...
T Consensus 274 ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 274 MLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 23344455666666666666543
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00059 Score=64.39 Aligned_cols=216 Identities=16% Similarity=0.179 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEeCC-CCCCC-CCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhh
Q 037587 173 ISALENAYQQAQTLNLKVKGVLITNP-SNPLG-TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAV 250 (464)
Q Consensus 173 ~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG-~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~ 250 (464)
++++++.|.+..+....+.++ |.-| ....| ...|++..+.+.+++.+|++.+|+||+.-+..-.+ .++..-.+
T Consensus 255 l~~Ve~li~~~~~k~~pVaai-IvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG---k~WaHehw- 329 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAI-IVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG---KFWAHEHW- 329 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEE-EeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC---ceeeehhc-
Confidence 567777777665444455554 4456 55555 45689999999999999999999999997532222 12221111
Q ss_pred hccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHH-HHHHhcccCCCChH---HHHHHHHHcCCchhhHHH
Q 037587 251 MDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVS-AATKMSSFGLVSSQ---TQYLLSRMLSDKKFTCNY 326 (464)
Q Consensus 251 ~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~-~~~~~~~~~~~s~~---~q~~~~~~l~~~~~~~~~ 326 (464)
++ +.+.. +-||||-|- .| ||... .+..-. ..+.+..+. ..+. ....+...+.+.++ .+.
T Consensus 330 -~l------~~PpD---~vTFSKK~q-~g---Gffh~-~~frpn~pYrifNTWm-GdP~k~lll~~vv~~I~~~~L-l~n 392 (484)
T KOG1405|consen 330 -NL------DSPPD---VVTFSKKFQ-TG---GFFHD-EEFRPNEPYRIFNTWM-GDPSKNLLLEEVVQEIKREDL-LNN 392 (484)
T ss_pred -CC------CCCcc---ceehhhhhh-cC---ccccC-cccCCCchHHHhhhhc-CChHHHHHHHHHHHHHhHHHH-HHH
Confidence 00 01122 349999994 55 67654 222211 222223322 2222 22223333443333 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-----C-CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 327 MKENRKRLRKRKEMLVSGLKVA-----G-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~~-----g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
..+ .-+.|...|.++ | +.-.... |-|+-+++|..... ..++. .++-+||.+--|
T Consensus 393 ~~~-------vG~~l~~gL~~Lq~~~p~~~~~~RGr-GTF~a~d~ps~~~R------dk~i~-~~~~nGv~~GGC----- 452 (484)
T KOG1405|consen 393 VAH-------VGKALLKGLLELQAKYPGKINNLRGR-GTFIAWDCPSGSIR------DKLIL-IARLNGVNLGGC----- 452 (484)
T ss_pred HHH-------HHHHHHHHHHHHHHhCchhhhccccc-ceEEEEeCCChHHH------HHHHH-HHHHcCceeccc-----
Confidence 222 223333333332 1 2222334 45888898864211 12443 345678876422
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 401 NEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 401 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+...+|+..+. ..+...+.+++++.+.+..
T Consensus 453 -g~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 453 -GDKSIRFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred -ccceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence 23446665554 3778888899999888753
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0061 Score=66.20 Aligned_cols=260 Identities=16% Similarity=0.166 Sum_probs=139.5
Q ss_pred CCCCcEEEeCChHHHHHHHHHHh--c-CCCCeEEEcCCCCCChhhhcccC---CCcEEEEEecCCCCCcccCHHHHHHHH
Q 037587 107 FDPNKLVLTAGSTAANETLMFCL--A-DPGDAFLLPTPYYPGFDRDLKWR---PGVEIVPIHCSSSNGFRITISALENAY 180 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l--~-~~gd~Vlv~~p~y~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~i 180 (464)
++-.|--+-.|++.+=..++.+. . .+..+|+|+.-.++.+...++.+ .|++++. +++++.+
T Consensus 139 m~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~ 205 (954)
T PRK12566 139 LDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLA 205 (954)
T ss_pred chhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcC
Confidence 44444444456555444333232 1 22468999999998877665432 2556553 2222222
Q ss_pred HHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCC
Q 037587 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260 (464)
Q Consensus 181 ~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (464)
. .++.+|++.+| |-.|.+ +++++|+++++++|.++| +.+.- +...-- .+ ++
T Consensus 206 ~------~~~~~v~vq~P-~~~G~i---~d~~~i~~~~h~~gal~~-~~~d~-laL~ll----~~-------------Pg 256 (954)
T PRK12566 206 A------HAVFGALLQYP-DTHGEI---RDLRPLIDQLHGQQALAC-VAADL-LSLLVL----TP-------------PG 256 (954)
T ss_pred C------CCEEEEEEECC-CCceEE---ccHHHHHHHHHHcCCEEE-EEeCH-HHHhCC----CC-------------hh
Confidence 2 26788899999 678888 678899999999887755 22211 111111 01 12
Q ss_pred CCCcEEEEc---CCCcCCCCCccEEEEEEecCHHHHHHHH----------------------------H--hcccCCCCh
Q 037587 261 LWSRIHIVY---SLSKDFSMPGFRVGMIYSNNERVVSAAT----------------------------K--MSSFGLVSS 307 (464)
Q Consensus 261 ~~~~vi~l~---S~SK~~g~~GlRiG~l~~~~~~~~~~~~----------------------------~--~~~~~~~s~ 307 (464)
..+-.|+++ +|+=-+|..|--.||+.+.++ +.+.+. + ..+.. ++.
T Consensus 257 e~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~-~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNI-CT~ 334 (954)
T PRK12566 257 ELGADVVLGSTQRFGVPMGYGGPHAAYFACRDD-YKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNI-CTA 334 (954)
T ss_pred hcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHH-HHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchh-hHH
Confidence 335556554 334444445666788877433 222210 0 01111 111
Q ss_pred HHHHH-HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHH
Q 037587 308 QTQYL-LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIF 386 (464)
Q Consensus 308 ~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~ 386 (464)
....+ ++.+... -+-.+-+++.-++...+..++.+.|.+.|+++... .||=-+.+.-. . ...++....+
T Consensus 335 qaL~A~~a~~Y~~-~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~~--~----~~~~~~~~a~- 404 (954)
T PRK12566 335 QVLLANIAGFYAV-YHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR--HFFDTLTLEVG--G----AQAAIIESAE- 404 (954)
T ss_pred HHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CccceEEEEcc--C----CHHHHHHHHH-
Confidence 21111 2221110 01133456666666777788999999988876432 45533333211 0 1223555554
Q ss_pred hcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHH
Q 037587 387 EVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIK 426 (464)
Q Consensus 387 ~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 426 (464)
+.||-++-- +++.+.||+.- .+.+++..++..+.
T Consensus 405 ~~~~n~r~~------~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 405 AARINLRIL------GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred HCCCeeEEe------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 568888732 24568888866 67888998888874
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0043 Score=56.34 Aligned_cols=256 Identities=16% Similarity=0.220 Sum_probs=127.7
Q ss_pred CcEEEEEecC-CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 155 GVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 155 g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
|.+++.+..- +.+...-|+++++..+++. |+.. |+..+.....=..-+++.+++|..+|..|++.-|+..+|+
T Consensus 124 gfepiiie~i~d~d~l~tdleav~~~iee~---g~dc--ilci~sttscfapr~pd~leaiaaica~~diphivnnayg- 197 (432)
T KOG3843|consen 124 GFEPIIIENILDGDELITDLEAVEAIIEEL---GEDC--ILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYG- 197 (432)
T ss_pred CCCceeeeccccchHHHHhHHHHHHHHHHh---CCce--EEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccc-
Confidence 8877666532 2234455788888888764 3333 2222221111122356889999999999999999999997
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEe-cCHHHHHHHHHhcccCCCChHHHHH
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS-NNERVVSAATKMSSFGLVSSQTQYL 312 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~-~~~~~~~~~~~~~~~~~~s~~~q~~ 312 (464)
.... +.........+. ....-++.|+-|.|-+|= -|.+++ -++..++.+.++.+-...++++...
T Consensus 198 --lqse--e~i~~iaa~~~~--------grida~vqsldknf~vpv--ggaiia~fk~n~iq~iak~ypgrasa~ps~dl 263 (432)
T KOG3843|consen 198 --LQSE--ECIHKIAAAAEC--------GRIDAFVQSLDKNFMVPV--GGAIIAAFKDNFIQEIAKMYPGRASASPSLDL 263 (432)
T ss_pred --cchH--HHHHHHHHHhhh--------ccHHHHHHHhhhcceeec--chhHhhHhHHHHHHHHHHhCCCccccCccHHH
Confidence 3222 111111111111 122345789999996541 134443 2333444444444333334455555
Q ss_pred HHHHcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcC
Q 037587 313 LSRMLS--DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVG 389 (464)
Q Consensus 313 ~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~g 389 (464)
+..+|. ...| .+.+.++.+.+.+.+..+...-+..|-.++. |+.....-+.+......+ +....++-.+|-..|
T Consensus 264 litll~~gqn~f-~e~~~eqkemf~~l~~ki~~~ae~~~e~l~~~p~n~is~amtl~ti~~~k--~kavt~~gsilfak~ 340 (432)
T KOG3843|consen 264 LITLLSLGQNAF-KELFGEQKEMFLKLRNKIIKFAEAIGECLLETPENEISLAMTLKTIDEAK--DKAVTLFGSILFAKG 340 (432)
T ss_pred HHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhhccCChHH--hhHHHHHHHHHHhcc
Confidence 555444 3444 4555555665555556665555555433332 222212222222111111 111123333333445
Q ss_pred eE---EeCCCCCCCCCC----------------CeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 390 LN---ISPGSSCHCNEP----------------GWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 390 I~---v~pg~~f~~~~~----------------~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
|. |.|.+.....-. +|+-+..+. ++..++++++.+|...+.+.+
T Consensus 341 isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~~rl~~~~a~~~ 404 (432)
T KOG3843|consen 341 ISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFFNRLDRCLAAFR 404 (432)
T ss_pred ccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhcCCcHhHHHHHHHHHHHHHHHHH
Confidence 53 555433221111 234333322 567889999999988776554
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.021 Score=63.38 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=124.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh------cCCCCeEEEcCCCCCChhhhc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL------ADPGDAFLLPTPYYPGFDRDL 150 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l------~~~gd~Vlv~~p~y~~~~~~~ 150 (464)
..-|.++.|...+|..||.|++.+++ +++++++|++.+.-..++..+++.+ ++.+.+-.++. .| ...+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~ 492 (1082)
T PLN02672 419 YFPCEPPAGSKRFRNLIAGFMRIYHH--IPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLPK-KW---LTSL 492 (1082)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcC--CcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCCH-HH---HhHh
Confidence 34577888999999999999999988 7889999999999999998877764 33332222221 11 1111
Q ss_pred ccC-------CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCe
Q 037587 151 KWR-------PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223 (464)
Q Consensus 151 ~~~-------~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~ 223 (464)
... .+..+..+.-.. ..+.+.+.++.. ++++|+..-.. +-..+....+.|++.+++.|.
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 558 (1082)
T PLN02672 493 AIENATSDSKSDDVITVIEAPR------QSDLVIELIKKL-----KPQVVVTGMAD---FEMRTSTAFEHLLNVTAEIGA 558 (1082)
T ss_pred hhhcccccCccCCeEEEEeCCC------cchHHHHHHHhC-----CCeEEEEeccc---hhhhhHHHHHHHHHHHHhhCc
Confidence 111 012222222111 124566666654 77766655332 334455678999999999999
Q ss_pred EEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH
Q 037587 224 HIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT 297 (464)
Q Consensus 224 ~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~ 297 (464)
.++.|+.-.- ...+.+ ....+.+++..- ..+.+..++.++-|.-=.+.+-+.+++.-++.+...+.
T Consensus 559 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1082)
T PLN02672 559 RLFLDISDHL-ELSSLP-GSNGVLKYLAGH------PLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALS 624 (1082)
T ss_pred EEEEehhhhe-eeccCC-CcccHHHHhcCC------CCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHH
Confidence 9999986531 122221 234555555432 14567777889988755589999999987776666554
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.26 Score=50.67 Aligned_cols=311 Identities=14% Similarity=0.193 Sum_probs=167.3
Q ss_pred cccccCCCC---CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE--eCCh---HHHHHHHHHHhcCCC----CeEEEcCCC
Q 037587 75 RELALFQDY---HGFPDAKKELVKLMARIRGNKVKFDPNKLVL--TAGS---TAANETLMFCLADPG----DAFLLPTPY 142 (464)
Q Consensus 75 ~~~~~Y~~~---~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i--t~G~---~~al~~~~~~l~~~g----d~Vlv~~p~ 142 (464)
.+++-|.|. +|+.++-+.+.+.+-+..| .|++.+ .+|+ ..++..+-..+-..| ...|+|.-.
T Consensus 566 anIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG------~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSA 639 (1001)
T KOG2040|consen 566 ANIHPFAPVEQAQGYQQLFTELEKDLCEITG------FDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSA 639 (1001)
T ss_pred ccCCCCCchHHHhhHHHHHHHHHHHhheeec------ccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecc
Confidence 445555543 5788888888888765433 344444 3333 334444332333444 346677666
Q ss_pred CCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC
Q 037587 143 YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR 222 (464)
Q Consensus 143 y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~ 222 (464)
++.-...+.. +|.+++++.++..+ .+|..+|.+..++. ..+..++.++.|+. -|.. .+.+++++++..+||
T Consensus 640 HGTNPASA~M-agmkvvpV~~~~~G--~id~~dLk~kaekh---~~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehG 710 (1001)
T KOG2040|consen 640 HGTNPASAAM-AGMKVVPVGCDANG--NIDMVDLKAKAEKH---KDNLAALMVTYPST-HGVF--EEGIDDICDIIHEHG 710 (1001)
T ss_pred cCCChhhHHh-cCCEEEEeeccCCC--CccHHHHHHHHHHh---hhhhheeEEecccc-cccc--cccHHHHHHHHHhcC
Confidence 7654444554 49999999988544 58999998877653 23677788888843 3443 357899999999999
Q ss_pred eEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC----ccEEEEEEecCHHHHHHHHH
Q 037587 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP----GFRVGMIYSNNERVVSAATK 298 (464)
Q Consensus 223 ~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~----GlRiG~l~~~~~~~~~~~~~ 298 (464)
.-+..|.+-..-..+-. .+.. + +..+.=--++|+|..| |-.+|=|.. ++.+...+..
T Consensus 711 GQVYlDGANMNAqVGlc--~pGd---~-------------GaDV~HLNLHKTFcIPHGGGGPg~gPIgV-K~HLapfLP~ 771 (1001)
T KOG2040|consen 711 GQVYLDGANMNAQVGLC--RPGD---I-------------GADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPS 771 (1001)
T ss_pred CEEEecCCCccceeccc--CCcc---c-------------cccceeecccceeeecCCCCCCCCCccch-hhhccccCCC
Confidence 99999987754322111 0001 1 1222223567777433 223343332 2222222111
Q ss_pred h-------------------cccCCCCh-HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCcc
Q 037587 299 M-------------------SSFGLVSS-QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAG 358 (464)
Q Consensus 299 ~-------------------~~~~~~s~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 358 (464)
. .+|++... +.-++-..++....+ . .....+. -+..++.+.|+.+--.++...-|
T Consensus 772 HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL-~--~as~~Ai--LNaNYMakRLe~hYkil~~~~~~ 846 (1001)
T KOG2040|consen 772 HPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGL-K--DASKIAI--LNANYMAKRLESHYKILFRGENG 846 (1001)
T ss_pred CCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhccccc-c--hhhHHHh--hhhHHHHHHHhhccceeEecCCc
Confidence 0 11111111 233455555555443 1 1111222 24467888888763223332222
Q ss_pred E---EEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 359 L---FCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 359 ~---f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
. =+.+++........ .+..+++++|. ++|..-. .-.|. -.+.+-|-... .+.+|+++++++|-.+-
T Consensus 847 ~vaHEFIlD~r~fK~~ag-ieavDvAKRL~-DYgFHaP-TmswP--V~gtLMIEPTESE~k~ElDRfcdAliSIr 916 (1001)
T KOG2040|consen 847 LVAHEFILDLRPFKKTAG-IEAVDVAKRLM-DYGFHAP-TMSWP--VAGTLMIEPTESEDKAELDRFCDALISIR 916 (1001)
T ss_pred ceeeeeeeechhhccccC-CcHHHHHHHHH-hccCCCC-ccccc--cCCceEeccCccccHHHHHHHHHHHHHHH
Confidence 1 12356654433232 23346778875 7888763 33332 35666665543 46788999888876543
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.28 Score=45.48 Aligned_cols=335 Identities=16% Similarity=0.133 Sum_probs=170.6
Q ss_pred CCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 35 PSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
+..+|+|+.+.-.+|.+.+.++-+...+ +..-|+.-.+-.++ +.....+...--..+.+..+ +|-.-+-+++
T Consensus 5 ~~~vvnFaaGPAklp~~VL~e~qkdl~n---~~g~GisV~EmSHR---sk~f~kii~~tes~lreLln--iPdn~~vlf~ 76 (370)
T KOG2790|consen 5 PERVVNFAAGPAKLPESVLLEAQKDLLN---FNGSGISVMEMSHR---SKDFAKIINDTESLLRELLN--IPDNYKVLFL 76 (370)
T ss_pred ccceeecCCCcccCCHHHHHHHHHHhhc---cCCCcceEEEeccc---chhHHHHHHHHHHHHHHHHc--CCCceeEEEE
Confidence 5678999988777777766665444321 11112111111111 11123333333333433333 3322334566
Q ss_pred eCChHHHHHHHHHHhc--CCC---CeEEEcCCCCCChhhhcccCCCcE-EEEEecCCCC-CcccCHHHHHHHHHHHhhcC
Q 037587 115 TAGSTAANETLMFCLA--DPG---DAFLLPTPYYPGFDRDLKWRPGVE-IVPIHCSSSN-GFRITISALENAYQQAQTLN 187 (464)
Q Consensus 115 t~G~~~al~~~~~~l~--~~g---d~Vlv~~p~y~~~~~~~~~~~g~~-~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~ 187 (464)
-.|++.-...+...|+ +.| |-|+.-.++-..+.++-+ . |.. .+..+..+.. +--+|.+.++. +
T Consensus 77 QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk-~-~~~~~V~~~~k~y~ygkvPd~~~w~~--------~ 146 (370)
T KOG2790|consen 77 QGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKK-Y-GTPNIVIPKLKSYTYGKVPDPSTWEL--------N 146 (370)
T ss_pred eCCCcccccccchhhhccccCCccceEEeccccHHHHHHHHh-h-CCceEEeccccccccCcCCChhhccc--------C
Confidence 7788888777777775 344 556665554444444333 3 433 3333322111 01134444432 2
Q ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
++.+.|++|.-..--|.-++.-. .-.-++.++|.|-.-- |-.. + .++ ...-++
T Consensus 147 ~da~yvyyCaNETVHGVEf~~~P------~~~~~~~vlVaDmSSn---flSr--p-vDv---------------sk~gvi 199 (370)
T KOG2790|consen 147 PDASYVYYCANETVHGVEFDFIP------VNDPKGAVLVADMSSN---FLSR--P-VDV---------------SKFGVI 199 (370)
T ss_pred CCccEEEEecCceeeceecCCCC------CCCCCCceEEEecccc---hhcC--C-ccc---------------hhcceE
Confidence 35566777754444455443211 1124577888886543 3333 1 221 133456
Q ss_pred EcCCCcCCCCCccEEEEEEecCHHHHHHHHH-------------hcccCCCChHH----HHHHHHHcCCchhhHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATK-------------MSSFGLVSSQT----QYLLSRMLSDKKFTCNYMKEN 330 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-------------~~~~~~~s~~~----q~~~~~~l~~~~~~~~~~~~~ 330 (464)
+.+.-|.+|++|+-+ ++.+++.+...... ...+++++.+. -.....+++.+. +..+
T Consensus 200 ~aGAQKN~G~aG~Tv--vivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GG-----l~a~ 272 (370)
T KOG2790|consen 200 FAGAQKNVGPAGVTV--VIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGG-----LAAM 272 (370)
T ss_pred EeccccccCccccEE--EEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhccc-----HHHH
Confidence 789999999999533 34434333222110 11123333222 233445555555 3444
Q ss_pred HHHHHHHHHHHHHHHHhC-CCeeecC----CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 037587 331 RKRLRKRKEMLVSGLKVA-GIRCLKS----NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGW 405 (464)
Q Consensus 331 ~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 405 (464)
.+.-.+..+.+.+.+.+. |+-..+- .+-|-+.+++.+ ..-+.+|....++++-|.+ -|.. .-|.
T Consensus 273 e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~------d~Le~eFLkeA~~~~mv~L-KGhR----SVGG 341 (370)
T KOG2790|consen 273 EKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEK------DELEAEFLKEAAKEHMVQL-KGHR----SVGG 341 (370)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecc------hHHHHHHHHHHHHhhhhcc-cccc----cccc
Confidence 455566778889998876 5432221 122333344431 1334467777765543433 3332 3466
Q ss_pred EEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 406 FRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 406 ~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+|-|+-. ++-++.+.++.-++++.+.+
T Consensus 342 iRASlYNAisv~~~q~L~~~m~~F~k~h 369 (370)
T KOG2790|consen 342 IRASLYNAISVEEVQKLAAFMKEFQKKH 369 (370)
T ss_pred chhhhhccccHHHHHHHHHHHHHHHHhc
Confidence 9999976 78999999999999988765
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.1 Score=42.07 Aligned_cols=154 Identities=11% Similarity=0.108 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCC---CeEEEcCCCCCCh----hhhcccCCCcEE-
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPG---DAFLLPTPYYPGF----DRDLKWRPGVEI- 158 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~g---d~Vlv~~p~y~~~----~~~~~~~~g~~~- 158 (464)
......++...+ ...++|.+.|.-+..+..++.++.+|- -+||.+.-.|+.- ...++.. |..+
T Consensus 114 e~il~l~~~iVG--------A~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lh-G~~~e 184 (465)
T KOG3846|consen 114 EPILPLLAPIVG--------AQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLH-GISPE 184 (465)
T ss_pred hhhhhhhhhhcc--------CCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhc-CCChH
Confidence 444445555543 677889999999999999999998875 3688888777653 2334433 5532
Q ss_pred ---EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 159 ---VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 159 ---~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
+.+... ++.-.+..+++.+.|+. ++..+.+|+++-.+-.||+.++ +.+|...-+..|+++=.|-+++
T Consensus 185 ~sm~~iePR-EGEetlRteDILd~IEk---ngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHA--- 254 (465)
T KOG3846|consen 185 NSMIQIEPR-EGEETLRTEDILDTIEK---NGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHA--- 254 (465)
T ss_pred HheEEeccc-ccccchhHHHHHHHHHh---cCCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhh---
Confidence 222222 34445667777777654 4556777777778999999986 5555544445688887888876
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF 275 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~ 275 (464)
++.- +. .+. .|+..+.++.--|-+
T Consensus 255 vgNV--pL-----~LH---------dWgVDFACWCSYKYl 278 (465)
T KOG3846|consen 255 VGNV--PL-----QLH---------DWGVDFACWCSYKYL 278 (465)
T ss_pred hcCC--ce-----EEe---------ecCCceEEEeeeccc
Confidence 5433 11 112 457777788777766
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.12 E-value=61 Score=34.27 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 037587 326 YMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGW 405 (464)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 405 (464)
.+++..+++-.....|...|++.|-++.. -.||=.+++.-.. +..++..+.++ ++|-++- -.++.
T Consensus 392 gL~~IArrvh~~T~~l~~~l~~aghel~~--k~fFDTLkI~~~~------s~~~~l~rA~~-~~iNlr~------~ed~t 456 (1001)
T KOG2040|consen 392 GLKEIARRVHNLTLILAEGLKNAGHELQH--KPFFDTLKIRCGC------SAEEVLDRAAK-RQINLRL------VEDGT 456 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhcc--ccccceEEEEecC------cHHHHHHHHHh-hcCceEE------eecCc
Confidence 35555555666667788888887755542 2366555443211 12245556554 4566552 13566
Q ss_pred EEEEeec-CCHHHHHHHHHHHH
Q 037587 406 FRICFAN-ITEETLQVALQRIK 426 (464)
Q Consensus 406 ~Ris~~~-~~~e~l~~~l~~l~ 426 (464)
+-+++-. +++++++.++..+.
T Consensus 457 igvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 457 IGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred eEEeecccccHHHHHHHHHHHc
Confidence 7788755 57888888877664
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.03 E-value=14 Score=34.97 Aligned_cols=141 Identities=13% Similarity=0.170 Sum_probs=82.7
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh---cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHH
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD---LKWRPGVEIVPIHCSSSNGFRITISALENAYQQA 183 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 183 (464)
+..+-|+||.|++..=..+..-+.+.|-++++.+-.=.+..+. ++.. | ++..+-+|-. +.+++.+..++.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~-g-~~~~y~cdis-----~~eei~~~a~~V 108 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI-G-EAKAYTCDIS-----DREEIYRLAKKV 108 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc-C-ceeEEEecCC-----CHHHHHHHHHHH
Confidence 5666788888888877888788889998775554433333333 3333 5 5555555522 456666666655
Q ss_pred hhcCCceEEEEEeCCC---CCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCC
Q 037587 184 QTLNLKVKGVLITNPS---NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260 (464)
Q Consensus 184 ~~~~~~~~~vil~~P~---NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (464)
.++.+.+. |+++|.. .-...-.+.+++++..++ |+ .+. +.....+++.|- ..
T Consensus 109 k~e~G~V~-ILVNNAGI~~~~~ll~~~d~ei~k~~~v----N~-------~~~---------f~t~kaFLP~M~----~~ 163 (300)
T KOG1201|consen 109 KKEVGDVD-ILVNNAGIVTGKKLLDCSDEEIQKTFDV----NT-------IAH---------FWTTKAFLPKML----EN 163 (300)
T ss_pred HHhcCCce-EEEeccccccCCCccCCCHHHHHHHHHH----hh-------HHH---------HHHHHHHhHHHH----hc
Confidence 55555665 6777763 223334688888887775 22 111 122222333220 12
Q ss_pred CCCcEEEEcCCCcCCCCCc
Q 037587 261 LWSRIHIVYSLSKDFSMPG 279 (464)
Q Consensus 261 ~~~~vi~l~S~SK~~g~~G 279 (464)
+.++++.+.|..-.+|.+|
T Consensus 164 ~~GHIV~IaS~aG~~g~~g 182 (300)
T KOG1201|consen 164 NNGHIVTIASVAGLFGPAG 182 (300)
T ss_pred CCceEEEehhhhcccCCcc
Confidence 5578888888877777666
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 464 | ||||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 0.0 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 0.0 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 0.0 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 1e-172 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 1e-138 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-17 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 3e-17 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 8e-16 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 1e-15 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-15 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-15 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 3e-15 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 4e-15 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 6e-15 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 2e-13 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 4e-12 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 7e-12 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 7e-12 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 8e-12 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 8e-12 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 2e-11 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-11 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 4e-11 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 9e-11 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 2e-10 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 8e-10 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 1e-09 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 1e-09 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 2e-09 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 3e-09 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 1e-08 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 2e-08 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 3e-08 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 3e-08 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 7e-08 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 8e-08 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 1e-07 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-07 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 2e-07 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 2e-07 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 3e-07 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 4e-07 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 4e-07 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 6e-07 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 1e-05 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 2e-05 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 2e-05 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 3e-05 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 5e-05 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 7e-05 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 2e-04 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 2e-04 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 3e-04 | ||
| 3if2_A | 444 | Crystal Structure Of Putative Amino-Acid Aminotrans | 9e-04 |
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|3IF2|A Chain A, Crystal Structure Of Putative Amino-Acid Aminotransferase (Yp_265399.1) From Psychrobacter Arcticum 273-4 At 2.50 A Resolution Length = 444 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 632 bits (1632), Expect = 0.0
Identities = 308/428 (71%), Positives = 360/428 (84%), Gaps = 2/428 (0%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A+ +SHGQDSSYFLGW+ YE NPY ++HN +GIIQMGLAENQL FDLLESWLA N
Sbjct: 3 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKN 62
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
EA K+NGES+F ELALFQDYHG P KK +V MA IRGNKV FDPN LVLTAG+T+
Sbjct: 63 PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATS 122
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANET +FCLADPG+A L+PTPYYPGFDRDLKWR GVEIVPIHC+SSNGF+IT +ALE AY
Sbjct: 123 ANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAY 182
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+A+ NL+VKGVL+TNPSNPLGT MT EL L++F + K IH++SDEIYSGT F SP
Sbjct: 183 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP- 241
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
SFIS+ME + DRN DE+ ++W R+H+VYSLSKD +PGFRVG IYSN++ VV+AATKMS
Sbjct: 242 -SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQ+LLS MLSDKK T NY+ EN KRL++R++ LVSGL+ +GI CL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI++EV LNISPGSSCHC EPGWFR+CFAN+ E TL +
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 421 ALQRIKVF 428
A+QR+K F
Sbjct: 421 AMQRLKAF 428
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 610 bits (1575), Expect = 0.0
Identities = 228/428 (53%), Positives = 320/428 (74%), Gaps = 5/428 (1%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS++A+ + HG++S YF GW+AY+++P+ L NP+G+IQMGLAENQL DL+E W+ N
Sbjct: 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRN 60
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+ + G F+ +A FQDYHG P+ +K + K M + RG +V+FDP ++V+ G+T
Sbjct: 61 PKG-SICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATG 119
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANET++FCLADPGDAFL+P+PYYP F+RDL+WR GV+++PIHC SSN F+IT A++ AY
Sbjct: 120 ANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
+ AQ N+KVKG+++TNPSNPLGT + L +++F+ IH+V DEIY+ TVFD+P
Sbjct: 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
F+SI E + ++ + + +HIVYSLSKD +PGFRVG+IYS N+ VV+ A KMS
Sbjct: 240 --FVSIAEILDEQEMTYCN--KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS 295
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVS+QTQY L+ MLSD+KF N+++E+ RL KR + +GL+V GI+CLK+NAGLF
Sbjct: 296 SFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLF 355
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CW+D+R LL +TF++E LW+ II +V LN+SPGSS C EPGWFR+CFAN+ + T+ +
Sbjct: 356 CWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDI 415
Query: 421 ALQRIKVF 428
AL RI+ F
Sbjct: 416 ALARIRRF 423
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 4e-46
Identities = 69/351 (19%), Positives = 133/351 (37%), Gaps = 54/351 (15%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPY-- 142
G P KK + +L + P +++ T G+T AN +++ L +PGD + P
Sbjct: 64 GSPAFKKSVSQLYTGV-------KPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQ 116
Query: 143 -YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201
+ L G E+ NG+ + L + K + I N +NP
Sbjct: 117 QLYDIPKSL----GAEVDLWQIEEENGWLPDLEKLRQL------IRPTTKMICINNANNP 166
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261
G M L L+ + +I+SDE+Y S ++
Sbjct: 167 TGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPS----------------IIEV 210
Query: 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL--VSSQTQYLLSRMLSD 319
+ + V SLSK +S+PG R+G + +N++ V + + + L+
Sbjct: 211 YDKGIAVNSLSKTYSLPGIRIGWVAANHQ-VTDILRDYRDYTMICAGVFDDLVAQLALAH 269
Query: 320 KKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEK 378
+ ++ NR L + +L + + + ++ +V + + F
Sbjct: 270 YQ---EILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDF-CL- 324
Query: 379 ELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFANITEETLQVALQRIKVF 428
+++ E G+ + PG+ G+ R+ FA +ETL L+++ F
Sbjct: 325 ----QLLQEHGVLLVPGN---RFERDGYVRLGFAC-EQETLIKGLEKLSQF 367
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 9e-46
Identities = 65/363 (17%), Positives = 146/363 (40%), Gaps = 48/363 (13%)
Query: 85 GFPDAKKELVKLMARI----RGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPT 140
G P+A++ + K + +VL +G + + + D GD L+P
Sbjct: 76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQ 135
Query: 141 PYYPGFDRDLKWRP-----GVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195
P +P + G+ + +C N + + + + K K +++
Sbjct: 136 PGFP------HYETVCKAYGIGMHFYNCRPENDWEADLDEIRRL------KDDKTKLLIV 183
Query: 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD--SPSSSFISIMEAVMDR 253
TNPSNP G+ + + + ++ ++ R+ + SDEIY+G VF P+++F S+ A
Sbjct: 184 TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSV--ADF-- 239
Query: 254 NIDESDDLWSRIHIVYSLSKDFSMPGFRVG-MIYSNNER----VVSAATKMSSFGL-VSS 307
+ I+ +K+ +PG+R+G ++Y + + ++ +
Sbjct: 240 ----ETTV--PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCT 293
Query: 308 QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKSNAGLFCWVDMR 366
Q L L + ++ + ++ + L + + G+ ++ +
Sbjct: 294 VVQAALGEALLNTPQ--EHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID 351
Query: 367 HLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFANITEETLQVALQRI 425
+ + + E ++K++ E + + PG+ + PG+ R+ E + A++RI
Sbjct: 352 LEKYRD-IKTDVEFFEKLLEEENVQVLPGT---IFHAPGFTRLTTT-RPVEVYREAVERI 406
Query: 426 KVF 428
K F
Sbjct: 407 KAF 409
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-44
Identities = 66/358 (18%), Positives = 143/358 (39%), Gaps = 48/358 (13%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
GF +++E+ + + + ++LT+G + A + + LA+PG L+P P +
Sbjct: 97 GFLSSREEI---ASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFS 153
Query: 145 GFDRDLKWRP-----GVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
++ G+E+ + + I + LE ++ K +++ NPS
Sbjct: 154 ------LYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYL------IDEKTACLIVNNPS 201
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259
NP G+ + + L ++ + + + I++DEIY VF + + D
Sbjct: 202 NPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFS--DCKYEPLATLSTD------- 252
Query: 260 DLWSRIHIVYSLSKDFSMPGFRVG-MIYSNNER-----VVSAATKMSSFGL-VSSQTQYL 312
I L+K + +PG+R+G ++ + + K+S L + Q
Sbjct: 253 ---VPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGA 309
Query: 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKSNAGLFCWVDMRHLLVS 371
L +L + L+ ++ L + G+R ++ + ++ V +
Sbjct: 310 LKSILCRTPG--EFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFP 367
Query: 372 NTFEAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFANITEETLQVALQRIKVF 428
FE + E ++++ E ++ P + C P + R+ + E + A RI+ F
Sbjct: 368 E-FENDVEFTERLVAEQSVHCLPAT---CFEYPNFIRVVIT-VPEVMMLEACSRIQEF 420
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 3e-42
Identities = 72/356 (20%), Positives = 144/356 (40%), Gaps = 52/356 (14%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G P ++ + +L G V DP ++V+T GS+ L D GD + P YP
Sbjct: 69 GLPALRQRIARLYGEWYG--VDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYP 126
Query: 145 GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGT 204
+ + L+ G+ V + + N + + + G+++ +P+NP GT
Sbjct: 127 SYRQILRAL-GLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGT 176
Query: 205 AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264
+ H + LI ++++ +SDEIY G +++ + + + + +
Sbjct: 177 MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTD---------------E 221
Query: 265 IHIVYSLSKDFSMPGFRVG-MIYSNNERVVSAATKMSS--FGLVSSQTQY--LLSRMLSD 319
+++ S SK FSM G+RVG M+ E V +++ F +Q L
Sbjct: 222 CYVINSFSKYFSMTGWRVGWMV--VPEDQVRVVERIAQNMFICAPHASQVAAL------- 272
Query: 320 KKFTC-NYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSNTFEAE 377
C ++ N + +++++ L AG R + + + D+ L
Sbjct: 273 AALDCDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLTDD-----S 327
Query: 378 KELWKKIIFEVGLNISPGSS--CHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431
+ +I+ + G+ ++PG G R +A ++ L R++ F Q+
Sbjct: 328 RAFAAEILEKAGVAVTPGLDFDPERGA-GTLRFSYAR-ATADIEEGLDRLEAFMQA 381
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 76/353 (21%), Positives = 144/353 (40%), Gaps = 43/353 (12%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPY-- 142
G + ++ R +V P +++T G + A +A+PGD L+ P+
Sbjct: 80 GIWELREAFASYYKRR--QRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYA 137
Query: 143 -YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201
Y F + GV+++P+ GF I LE+ +N + KG++++NP NP
Sbjct: 138 NYNAFAKIA----GVKLIPVTRRMEEGFAIP-QNLESF------INERTKGIVLSNPCNP 186
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261
G E+ +L+ ++ + ++ DE+YS VF +S +SI D+ +
Sbjct: 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIES---DKVV------ 237
Query: 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL-VSSQTQYLLSRMLSDK 320
++ S+SK FS G RVG + + NE ++S A K++ L Q +L+
Sbjct: 238 -----VIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD 292
Query: 321 KFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVDMRHLLVSNTFE-AEK 378
++ R+ R+R E ++ L + R K + + ++ V + E A
Sbjct: 293 D---SFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELP---VEDAEEFARW 346
Query: 379 ELWKKIIFEVGLNISPGS---SCHCNEPGWFRICFANITEETLQVALQRIKVF 428
L + ++P RI + ++ L A+ +
Sbjct: 347 MLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEG 398
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-41
Identities = 76/359 (21%), Positives = 141/359 (39%), Gaps = 47/359 (13%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G P+ +K +V+ R N V P+ + +TA T A + + L DPGD L+P P YP
Sbjct: 79 GLPELRKAIVEREKRK--NGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYP 136
Query: 145 GFDRDLKWRPGVEI-----VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
+ V+ V ++ I + + + K + + NP+
Sbjct: 137 ------PYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKK------ITDRTKAIAVINPN 184
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259
NP G + L ++N + I ++SDEIY ++ IS D
Sbjct: 185 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYE---GEHISPGSLTKD------- 234
Query: 260 DLWSRIHIVYSLSKDFSMPGFRVG-MIYSNNERVVSAATKM-----SSFGLVSSQTQYLL 313
+ ++ LSK + G+R+G M + + E +S + ++ Q+
Sbjct: 235 ---VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAA 291
Query: 314 SRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVDMRHLLVSN 372
L+ +Y+KE K+L++R++ + L ++ GI K + + +
Sbjct: 292 IAGLTGPM---DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIE----VG 344
Query: 373 TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431
++ +KE ++ + GS G FR F E L+ A+ R + F +
Sbjct: 345 PWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMKE 402
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 3e-41
Identities = 69/368 (18%), Positives = 139/368 (37%), Gaps = 70/368 (19%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAA-NETLMFCLADPGDAFLLPTPYY 143
G + + + + + + F+ + L +T G+ A+ + +D D F+ PY+
Sbjct: 77 GDVETRAAIAEFLNN--THGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYF 134
Query: 144 PGFDRDLKWRPGVEI-----VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP 198
P + + V V + + F+I ALE +N +GV+I +P
Sbjct: 135 PEY------KVFVNAAGARLVEVPADT-EHFQIDFDALEER------INAHTRGVIINSP 181
Query: 199 SNPLGTAMTHQELNHLINFSKSK------RIHIVSDEIYSGTVFDSPSSSFISIMEAVMD 252
+NP GT + + + L + + K I I++DE Y V+D F++ D
Sbjct: 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYY---D 238
Query: 253 RNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL-------- 304
+ + YS SK S+PG R+G + +E V A ++
Sbjct: 239 NTL-----------VCYSYSKSLSLPGERIGYVLVPDE-VYDKAELYAAVCGAGRALGYV 286
Query: 305 -VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWV 363
S Q ++ + + ++ +++L GL G C K + + +V
Sbjct: 287 CAPSLFQKMIVKCQG--------ATGDINAYKENRDLLYEGLTRIGYHCFKPDGAFYMFV 338
Query: 364 DMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQ 423
L ++ ++ ++ + V C PGW RI + + E ++ ++
Sbjct: 339 K---ALEDDSNAFCEKAKEEDVLIV-----AADGFGC--PGWVRISYC-VDREMIKHSMP 387
Query: 424 RIKVFAQS 431
+ +
Sbjct: 388 AFEKIYKK 395
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 3e-41
Identities = 68/357 (19%), Positives = 133/357 (37%), Gaps = 37/357 (10%)
Query: 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLP 139
G P ++ + V+ DP + T GS LM D GD L+P
Sbjct: 72 STSRGIPRLRRAISHWYRDRYD--VQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVP 129
Query: 140 TPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
P YP G ++ + F + K + +++ PS
Sbjct: 130 NPSYPIHIYGAVIA-GAQVRSVPLVPGIDFFNELERAIRESIP------KPRMMILGFPS 182
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDES 258
NP + ++ +K + +V D Y+ V+D + S + + A D +
Sbjct: 183 NPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGA-KDIAV--- 238
Query: 259 DDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQ---TQYLLSR 315
++LSK ++M G+R+G + N +VSA ++ S+ Q
Sbjct: 239 --------EFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSY-HDYGTFTPLQVAAIA 288
Query: 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFE 375
L + +++ ++ ++R+++LV GL+ AG A ++ W +
Sbjct: 289 ALEGDQ---QCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAK---IPEPYAHL 342
Query: 376 AEKELWKKIIFEVGLNISPGSSC-HCNEPGWFRICFANITEETLQVALQRIKVFAQS 431
E KK++ + +++SPG + R + L+ A++ IK ++
Sbjct: 343 GSLEFAKKLLQDAKVSVSPGIGFGDYGD-DHVRFALI-ENRDRLRQAVRGIKAMFRA 397
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 5e-41
Identities = 75/354 (21%), Positives = 136/354 (38%), Gaps = 40/354 (11%)
Query: 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLP 139
+HG K+ +V R V D V G+ + C+ +PGD LLP
Sbjct: 82 GAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLP 139
Query: 140 TPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
P Y + + + VP++ + S +++ K K + +T P+
Sbjct: 140 DPGYTDYLAGVLL-ADGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLIYLTYPN 191
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259
NP G+ T + + I K IV D Y FD+ + S ++ D I
Sbjct: 192 NPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENG-KDVAI---- 246
Query: 260 DLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQ---TQYLLSRM 316
+YSLSK ++M GFRVG N+ ++ A K + + Q
Sbjct: 247 -------EIYSLSKGYNMSGFRVGFAVG-NKDMIQALKKYQTH-TNAGMFGALQDAAIYA 297
Query: 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEA 376
L+ ++++E + R++ + L A + + + G++ W++ S FE
Sbjct: 298 LNHYD---DFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPPGYDSEQFE- 353
Query: 377 EKELWKKIIFEVGLNISPGSSC-HCNEPGWFRICFANITEETLQVALQRIKVFA 429
+ ++ E + ++PG + RI A + ++ L A R+ A
Sbjct: 354 -----QFLVQEKSILVAPGKPFGENGN-RYVRISLA-LDDQKLDEAAIRLTELA 400
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 3e-40
Identities = 68/370 (18%), Positives = 137/370 (37%), Gaps = 48/370 (12%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G P L+KL + I + + +T G+ + + L + GD ++ P++
Sbjct: 96 GRPSLINSLIKLYSPIYN--TELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFD 153
Query: 145 GFDRDLKWRPGVEIVPI----------HCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194
+ +++ G ++V + + + I E A + K K V+
Sbjct: 154 QYIPNIE-LCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKA------ITSKTKAVI 206
Query: 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRN 254
I P NP+G T +EL L N + I+SDE+Y F + ++ +
Sbjct: 207 INTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLT 266
Query: 255 IDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT--QYL 312
+ V S K F+ G+R+G + S N ++S A K + +S + Q
Sbjct: 267 L-----------TVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEA 315
Query: 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN 372
+ + + Y ++ R+ + ++ S G+ F VD + +
Sbjct: 316 CANSI-NDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPE 374
Query: 373 TFEAEKELW---------KKIIFEVGLNISPGSSCHCNE-----PGWFRICFANITEETL 418
+ +E+ +I E+G+ P + + E R + L
Sbjct: 375 DYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK-DDAYL 433
Query: 419 QVALQRIKVF 428
+ A++R+K+
Sbjct: 434 ENAVERLKLL 443
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 4e-40
Identities = 70/362 (19%), Positives = 129/362 (35%), Gaps = 41/362 (11%)
Query: 78 ALFQDYH------GFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLA 130
+ Q + G ++ + + R+ G + D + + TAG+T A + L
Sbjct: 55 HVAQGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITVTAGATEALYAAITALV 112
Query: 131 DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190
GD + P Y + + G + + FR+ L+ +
Sbjct: 113 RNGDEVICFDPSYDSYAPAIA-LSGGIVKRMALQP-PHFRVDWQEFAAL------LSERT 164
Query: 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAV 250
+ V++ P NP T + L I ++SDE+Y F S++
Sbjct: 165 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFS--QQGHASVLAH- 221
Query: 251 MDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT- 309
L R V S K + M G++VG + + + K+ + S T
Sbjct: 222 --------PQLRERAVAVSSFGKTYHMTGWKVGYCVA-PAPISAEIRKVHQYLTFSVNTP 272
Query: 310 -QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHL 368
Q L+ ML + + R+++++LV+ L + + L F VD +
Sbjct: 273 AQLALADMLRAEP---EHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAV 329
Query: 369 LVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPG--WFRICFANITEETLQVALQRIK 426
+ + E + + E G+ P S + R+CFA E TL A +R++
Sbjct: 330 ----STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLR 384
Query: 427 VF 428
Sbjct: 385 QL 386
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 6e-40
Identities = 49/377 (12%), Positives = 106/377 (28%), Gaps = 55/377 (14%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGST----AANETLMFCLADPGDAFLLPT 140
G P+ K+E + + V T GS + + L
Sbjct: 83 GLPELKQEASRFAKL--FVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFID 140
Query: 141 PYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSN 200
P + + G + G ++ + ++ +NP+N
Sbjct: 141 PGFNLNKLQCRIL-GQKFESFDLFEYRGEKLREKLESYL------QTGQFCSIIYSNPNN 193
Query: 201 PLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260
P MT +EL + + + ++ D Y G F + E + ++ D
Sbjct: 194 PTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD---YSHPGEPLYQPSVANYTD 250
Query: 261 LWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL---------------- 304
+ S SK FS G R+G++ + + +
Sbjct: 251 ---NYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYAL 307
Query: 305 ---VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAG--- 358
+ Q+ ++ ML +++ ++ ++ G + G
Sbjct: 308 SSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEP 367
Query: 359 -----LFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANI 413
F V +L +K + I+ ++ RIC + +
Sbjct: 368 LADGFYFT--------VGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEA-MRICTSLL 418
Query: 414 TEETLQVALQRIKVFAQ 430
E +R+++
Sbjct: 419 PESQFPDLEKRLQMLNA 435
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 1e-39
Identities = 66/351 (18%), Positives = 149/351 (42%), Gaps = 33/351 (9%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLPTPYY 143
G + ++ + + + + N ++ DP ++ G+ A + G+ L+PTP +
Sbjct: 64 GLLELREAIAEKLKK--QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAF 121
Query: 144 PGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLG 203
+ + G V + + FR+ + L+ + K + ++I +P NP G
Sbjct: 122 VSYAPAVILAGGK-PVEVPTYEEDEFRLNVDELKKY------VTDKTRALIINSPCNPTG 174
Query: 204 TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS 263
+T ++L + +F + ++SDE+Y ++D + SI D ++
Sbjct: 175 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD--DARHYSIASL---------DGMFE 223
Query: 264 RIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL--VSSQTQY-LLSRMLSDK 320
R V SK F+M G+R+G + + + ++ K + + QY + ++
Sbjct: 224 RTITVNGFSKTFAMTGWRLGFVAAPSW-IIERMVKFQMYNATCPVTFIQYAAAKALKDER 282
Query: 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKEL 380
+ ++E RK +R++++ L G+ +K + + + +T K+
Sbjct: 283 SWKA--VEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPR-----IRDTGLTSKKF 335
Query: 381 WKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431
+ ++ E + + PGS+ G+ RI +A E L+ A+ R++ +
Sbjct: 336 SELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKE 385
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 1e-39
Identities = 75/345 (21%), Positives = 141/345 (40%), Gaps = 44/345 (12%)
Query: 92 ELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLK 151
L + +A + +P +V+T+G+T A L+ L PGD ++ P++ + D
Sbjct: 65 ALREALAE----EFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF 120
Query: 152 WRPGVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQE 210
G + + + GFR+ +SALE A L + + +L+ P NP G +E
Sbjct: 121 -LAGAKARLVRLDLTPEGFRLDLSALEKA------LTPRTRALLLNTPMNPTGLVFGERE 173
Query: 211 LNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270
L + +++ + ++SDE+Y + +R V S
Sbjct: 174 LEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAP---ERTF-----------TVGS 219
Query: 271 LSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT--QYLLSRMLSDKKFTCNYMK 328
K G+RVG I + + M + S+ T Q ++ L + + +
Sbjct: 220 AGKRLEATGYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREG-FYE 277
Query: 329 ENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEV 388
R+ R+R+++L GL+ G+R F ++ ++A +++ E
Sbjct: 278 ALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG------WDAF-----RLVEEA 326
Query: 389 GLNISPGSSCHCNEPG--WFRICFANITEETLQVALQRIKVFAQS 431
+ + P S+ + +P FR F TEE L +AL+R+ S
Sbjct: 327 RVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNS 370
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 76/375 (20%), Positives = 140/375 (37%), Gaps = 50/375 (13%)
Query: 78 ALFQDYH------GFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLA 130
A+ + G ++ + R G V +DP VL T G+T A + L
Sbjct: 50 AIAGGVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETEVLVTVGATEAIAAAVLGLV 107
Query: 131 DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLK 189
+PG LL P+Y + + G V + GF + AL A + +
Sbjct: 108 EPGSEVLLIEPFYDSYSPVVA-MAGAHRVTVPLVPDGRGFALDADALRRA------VTPR 160
Query: 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEA 249
+ ++I +P NP G ++ EL + + + + +++DE+Y VFD + + +
Sbjct: 161 TRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFD--HARHLPLAGF 218
Query: 250 VMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT 309
D + R + S +K F+ G+++G +++ +
Sbjct: 219 ---------DGMAERTITISSAAKMFNCTGWKIGWACG-PAELIAGVRAAKQYLSYVGGA 268
Query: 310 --QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRH 367
Q ++ L + ++ R LR R++ L +GL G S F D R
Sbjct: 269 PFQPAVALALDTED---AWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRP 325
Query: 368 LLVSNTFEAEKELWKKIIFEVGLNISPGSS-CHCNEPG----------WFRICFANITEE 416
L ++ E + +VG+ P S+ C R F ++
Sbjct: 326 L----GYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDD 380
Query: 417 TLQVALQRIKVFAQS 431
TL A++R+ V A+
Sbjct: 381 TLDEAIRRLSVLAER 395
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 5e-39
Identities = 60/355 (16%), Positives = 121/355 (34%), Gaps = 47/355 (13%)
Query: 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLP 139
+E + G V DP + L GS L+ L +P D LLP
Sbjct: 60 CLKSCTLPFLEEAARWYEGRYG--VGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLP 117
Query: 140 TPYYPGFDRDLKWRPGVEI---VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT 196
YP + + + A+ + + K +L+
Sbjct: 118 EVAYPSY------FGAARVASLRTFLIPLREDGLADLKAVPEGVWR------EAKVLLLN 165
Query: 197 NPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNID 256
P+NP G + ++ + ++ D Y V++ + S +++ A +R +
Sbjct: 166 YPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGA-KERVV- 223
Query: 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQ---TQYLL 313
++SLSK +++ GFR+G +E ++ ++ + +Q +
Sbjct: 224 ----------ELFSLSKSYNLAGFRLGFALG-SEEALARLERVKGV-IDFNQYAGVLRMG 271
Query: 314 SRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNT 373
L K ++ + R+R + LK + L A ++ W + +
Sbjct: 272 VEALKTPK---EVVRGYARVYRERALGMAEALK-GVLSLLPPRATMYLWGRLPEGVDDLE 327
Query: 374 FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
F + + + + ++PG G+ RI E L A +RI+
Sbjct: 328 F-GLRLVERGVA------LAPGRGFGPGGKGFVRIALV-RPLEELLEAAKRIREA 374
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 3e-38
Identities = 74/371 (19%), Positives = 132/371 (35%), Gaps = 50/371 (13%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLPTPYY 143
G P K L L +I + DPN+ +L G+ + + L DPGD ++ P+Y
Sbjct: 62 GHPALVKALSCLYGKIYQ--RQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFY 119
Query: 144 PGFDRDLKWRPGVEIVPI---------HCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194
++ ++ G V I +S+ + LE+ + K K ++
Sbjct: 120 DCYEPMVR-MAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESK------FSSKTKAII 172
Query: 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRN 254
+ P NPLG T QEL + + +SDE+Y V+ + + I
Sbjct: 173 LNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYT--GHTHVKIATL----- 225
Query: 255 IDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT--QYL 312
+W R + S K FS+ G+++G ++ + + T Q
Sbjct: 226 ----PGMWERTITIGSAGKTFSVTGWKLGWSIG-PAHLIKHLQTVQQNSFYTCATPLQAA 280
Query: 313 LSRMLSDKKFTCN----YMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHL 368
L+ + Y K L +++ +V L G++ + + G F D+ L
Sbjct: 281 LAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSL 340
Query: 369 LVSNTFEAEKELW-----KKIIFEVGLNISPGSS------CHCNEPGWFRICFANITEET 417
+ E + K + L P S+ E R CF + T
Sbjct: 341 GADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFE-KLVRFCFIK-KDST 398
Query: 418 LQVALQRIKVF 428
L A + + +
Sbjct: 399 LDAAEEIFRAW 409
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 5e-38
Identities = 74/371 (19%), Positives = 145/371 (39%), Gaps = 42/371 (11%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAG-STAANETLMFCLADPGDAFLLPTPYY 143
G + + +A G + + + LT G S + + + + D L+P P Y
Sbjct: 135 GIHGLRDAIASGIASRDG--FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQY 192
Query: 144 PGFDRDLKWRPGVEI-----VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP 198
P + + + VP + + S G+ + S ++ + A++ + V+ +++ NP
Sbjct: 193 P------LYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINP 246
Query: 199 SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDES 258
NP G + + ++ F K++ + +++DE+Y ++ + F S + V E
Sbjct: 247 GNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYV-DNKKFHSFKKIVRSLGYGEE 305
Query: 259 DDLWSRIHIVYSLSK-DFSMPGFRVG-MIYSN-NERVVSAATKMSSFGLVSS-QTQYLLS 314
D S+SK + G R G + + V K++S L S+ Q L S
Sbjct: 306 DLPLVSYQ---SVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILAS 362
Query: 315 RMLSDKK----FTCNYMKEN---RKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVDMR 366
+++ K +Y E L +R + L K+ GI C ++ ++ + +
Sbjct: 363 LVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQIC 422
Query: 367 HLLVSNTFEAEKELWK--------KIIFEVGLNISPGSSCH-CNEPGWFRICFANITEET 417
L EA K K +++ G+ + PGS FR E+
Sbjct: 423 --LPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILP-QEDK 479
Query: 418 LQVALQRIKVF 428
+ + R VF
Sbjct: 480 IPAVISRFTVF 490
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-37
Identities = 68/376 (18%), Positives = 135/376 (35%), Gaps = 51/376 (13%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLPTPYY 143
G+P K L + G + DP + VL T G A T L D GD ++ P++
Sbjct: 68 GYPPLTKILASFFGELLG--QEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFF 125
Query: 144 PGFDRDLKWRPGVEIVPI----------HCSSSNGFRITISALENAYQQAQTLNLKVKGV 193
++ G V + SS+ +++ L + K +
Sbjct: 126 DCYEPMTM-MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGK------FTSRTKAL 178
Query: 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDR 253
++ P+NPLG + +EL + + + + ++DE+Y V+D ISI
Sbjct: 179 VLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYD--GHQHISIASL---- 232
Query: 254 NIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT--QY 311
+W R + S K FS G++VG + + ++ + + T Q
Sbjct: 233 -----PGMWERTLTIGSAGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQA 286
Query: 312 LLSRMLSDKKFTC----NYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRH 367
++ ++ +Y + + +++ ++ ++ L+ G++ + F D+
Sbjct: 287 AVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISD 346
Query: 368 LLVSNTFEAEK-------ELWKKIIFEVGLNISPGSSCHCNEP-----GWFRICFANITE 415
K +I GL P S + + R CF E
Sbjct: 347 FKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DE 405
Query: 416 ETLQVALQRIKVFAQS 431
TLQ ++++ +
Sbjct: 406 ATLQAMDEKLRKWKVE 421
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 82/373 (21%), Positives = 133/373 (35%), Gaps = 48/373 (12%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLPTPYY 143
G P + L KL +++ +P VL T G+ A + D GD ++ P++
Sbjct: 78 GHPRLVQALSKLYSQLVD--RTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFF 135
Query: 144 PGFDRDLKWRPGVEIVPI--------HCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195
++ +K G I SS + + + LE N K K ++I
Sbjct: 136 DCYEPMVK-AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEAL------FNEKTKMIII 188
Query: 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNI 255
P NPLG M EL + N K + VSDE+Y VF+ I I
Sbjct: 189 NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFE--PFEHIRICTL------ 240
Query: 256 DESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT--QYLL 313
+W R + S K FS+ G+++G Y E ++ + + + T Q +
Sbjct: 241 ---PGMWERTITIGSAGKTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAI 296
Query: 314 SRMLSDK----KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLL 369
+ + K Y L +++ + S L G+ G F D L
Sbjct: 297 AVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLD 356
Query: 370 VSNTFEAEK------ELWKKIIFEVGLNISPGSSCHCNEP-----GWFRICFANITEETL 418
E K + VGL P S+ + + R CF +E L
Sbjct: 357 SKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENL 415
Query: 419 QVALQRIKVFAQS 431
Q A + ++ + S
Sbjct: 416 QKAAEILRKWKGS 428
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 6e-37
Identities = 86/359 (23%), Positives = 157/359 (43%), Gaps = 61/359 (16%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPY-- 142
G + ++ + K + K P+++V+T G+ A L DPGD ++ +P
Sbjct: 79 GIYELREGIAKRIGE--RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWV 136
Query: 143 -YPGFDRDLKWRPGVEI-----VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT 196
Y P + + + S F+ ++ +E L K K VLI
Sbjct: 137 SYI---------PQIILAGGTVNVVETFMSKNFQPSLEEVEGL------LVGKTKAVLIN 181
Query: 197 NPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNID 256
+P+NP G + L L+ +K + +I+SDE+Y V+ +S + +
Sbjct: 182 SPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDV---------- 231
Query: 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL--VSSQTQY-LL 313
+ + RI + SK SM G+RVG + S +E+V +A +K+ S +++ QY L
Sbjct: 232 --SEGFDRIVYINGFSKSHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAAL 288
Query: 314 SRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF-CWVDMRHLLVSN 372
+ D + M + ++RK +V LK G++ ++ G F + V
Sbjct: 289 KALEVDNSY----M---VQTFKERKNFVVERLKKMGVKFVEPE-GAFYLFFK-----VRG 335
Query: 373 TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431
+ + ++++ E + + PGS+ +PG+ R+ FA + E L AL RI+ F S
Sbjct: 336 D---DVKFCERLLEEKKVALVPGSA--FLKPGFVRLSFA-TSIERLTEALDRIEDFLNS 388
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-36
Identities = 76/376 (20%), Positives = 153/376 (40%), Gaps = 48/376 (12%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGD----AFLLPT 140
G ++++ + R R V DP+ + LT G++ T++ L G ++P
Sbjct: 130 GVNCIREDVAAYITR-RDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPI 188
Query: 141 PYYPGFDRDLKWRPGVEI-----VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195
P YP + + V + N + + ++ L A Q+A + K + I
Sbjct: 189 PQYP------LYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEA-KDHCDPKVLCI 241
Query: 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNI 255
NP NP G + + + +I+F+ +++ +++DE+Y V+ P F S + + +
Sbjct: 242 INPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYS-PDCRFHSFKKVLYEMGP 300
Query: 256 DESDDLWSRIHIVY-SLSKDF-SMPGFRVG-MIYSN-NERVVSAATKMSSFGLVSSQT-Q 310
+ S ++ + S SK + G+R G M N + + K+ S L + Q
Sbjct: 301 EYSSNV---ELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQ 357
Query: 311 YLLSRML--------SDKKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFC 361
+ ++ S ++F+ + L K+ ++ +V GI C ++
Sbjct: 358 AAMDIVVNPPVAGEESFEQFSR-EKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYA 416
Query: 362 WVDMRHLLVSNTFEAEKELWK--------KIIFEVGLNISPGSSCHCNEPGW-FRICFAN 412
+ + + + EA + K++ E G+ + PGS E + FR+
Sbjct: 417 FPRIF--IPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP 474
Query: 413 ITEETLQVALQRIKVF 428
E L+ LQ++K F
Sbjct: 475 -PVEKLKTVLQKVKDF 489
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 7e-36
Identities = 57/362 (15%), Positives = 124/362 (34%), Gaps = 51/362 (14%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLMFCLADPGDAFLLPTPYY 143
G + L +A D ++ T G+ A + GD + P Y
Sbjct: 79 GDLGIRDLLAPRLAA--FTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDY 136
Query: 144 PGFDRDLKWRPGVEI-----VPIH----CSSSNGFRITISALENAYQQAQTLNLKVKGVL 194
R VE VP+ + + ++ LE A + L
Sbjct: 137 FAN------RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEA------FKAGARVFL 184
Query: 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDR 253
+NP+NP G + +E+ + + +++D++YS + + + + +
Sbjct: 185 FSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAEN 244
Query: 254 NIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL--VSSQTQY 311
+ + SK S+ G+R+G+ + + +++ K+ + + +Q
Sbjct: 245 VV-----------TIMGPSKTESLSGYRLGVAFGSRA-IIARMEKLQAIVSLRAAGYSQA 292
Query: 312 -LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVDMRHLL 369
L + M++ R + ++ L+ L G+ AG + +
Sbjct: 293 VLRGWFDEAPGW----MEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPR----- 343
Query: 370 VSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429
+ A E K + + G+ ++PG+ + R+ F+ E A +RI
Sbjct: 344 LPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLV 402
Query: 430 QS 431
+
Sbjct: 403 ER 404
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 73/352 (20%), Positives = 147/352 (41%), Gaps = 47/352 (13%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPY-- 142
G P+ ++ L + R N + P + ++T G + A L + DPGD ++ +PY
Sbjct: 69 GIPELREALAEKFRR--ENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWV 126
Query: 143 -YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201
YP ++ G +V + GF + A + + K +++ +P+NP
Sbjct: 127 SYP----EMVRFAGGVVVEVETLPEEGFVPDPERVRRA------ITPRTKALVVNSPNNP 176
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261
G + L L + ++VSDEIY +++ S + +
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE---GEHFSPGRVAPEHTL------ 227
Query: 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-----SSFGLVSSQTQYLLSRM 316
V +K F+M G+R+G E V+ A + +S + Q+
Sbjct: 228 -----TVNGAAKAFAMTGWRIGYACGPKE-VIKAMASVSRQSTTS---PDTIAQWATLEA 278
Query: 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEA 376
L++++ + +++ R+ R+R+++L+ GL G++ ++ + + +D + A
Sbjct: 279 LTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAA 338
Query: 377 EKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
E + E G+ + PG+ G R+ +A +EE L+ AL+R
Sbjct: 339 E------RLLEAGVAVVPGTD--FAAFGHVRLSYAT-SEENLRKALERFARV 381
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 66/351 (18%), Positives = 150/351 (42%), Gaps = 42/351 (11%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPY-- 142
G P ++ + + + R N + + + +++T G + LM + +PGD ++P P+
Sbjct: 68 GEPRLREAIAQKLQR--DNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWV 125
Query: 143 -YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201
YP ++ V + + F+++ + A + K K ++ PSNP
Sbjct: 126 SYP----EMVKLAEGTPVILPTTVETQFKVSPEQIRQA------ITPKTKLLVFNTPSNP 175
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261
G T E+ + + + ++SDEIY ++D + +SI A S +
Sbjct: 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD--DAQHLSIGAA--------SPEA 225
Query: 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQY-LLSRMLS 318
+ R + +K ++M G+RVG + +V AATK+ V + QY ++ +
Sbjct: 226 YERSVVCSGFAKTYAMTGWRVGFLAGPVP-LVKAATKIQGHSTSNVCTFAQYGAIAAYEN 284
Query: 319 DKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAE 377
+ ++E +R+ ++ L + G+ C K + + + ++ T +
Sbjct: 285 SQDC----VQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPS-----IAKTGRSS 335
Query: 378 KELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
+ +++ + + PG++ R+ +A +T++ ++R++ F
Sbjct: 336 LDFCSELLDQHQVATVPGAA--FGADDCIRLSYA-TDLDTIKRGMERLEKF 383
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 64/367 (17%), Positives = 134/367 (36%), Gaps = 47/367 (12%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G + + + M R + ++ ++T T + + D LLP +
Sbjct: 89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWG 148
Query: 145 GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN-PSNPLG 203
+ R G + + T +L A Q K K ++I N P+NP G
Sbjct: 149 NYKLVFNTRNGAN-LQTYPIFDKDGHYTTDSLVEALQSYN----KDKVIMILNYPNNPTG 203
Query: 204 TAMTHQELNHLINFSKS-----KRIHIVSDEIYSGTVF-DSPSSSFISIMEAVMDRNIDE 257
TH+E+ ++ K+ ++ V D+ Y G + D + S + + + I
Sbjct: 204 YTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAI-- 261
Query: 258 SDDLWSRIHIVYSLSKDFSMPGFRVGMI------YSNNERVVSAATKMSSFGLVSS---Q 308
+ +K+F GFRVG + + E + + + +SS
Sbjct: 262 ------LPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIR-SNISSGPLP 314
Query: 309 TQYLLSRMLSDKKFTCNYMKENRKRLRKR----KEMLVSGLKVAGIRCLKSNAGLFCWVD 364
TQ + +L + K +++N + L++R KE++ + + + N+G F +
Sbjct: 315 TQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIK 374
Query: 365 MRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQR 424
+ + + E L K +I + + + ++ RI F+ + ++ +
Sbjct: 375 V------HDVDPE-ALRKHLIDKYSIGVIALNATD------IRIAFSCVEKDDIPHVFDS 421
Query: 425 IKVFAQS 431
I
Sbjct: 422 IAKAIDD 428
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 54/370 (14%), Positives = 109/370 (29%), Gaps = 73/370 (19%)
Query: 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA--------DPGDAFLL 138
+ +K + +L + GN +V G T L+ L+ P +
Sbjct: 103 FELEKTIKELHEVV-GNAAA-KDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVA 160
Query: 139 PTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP 198
P+YP F E + + N N + ++T+P
Sbjct: 161 HAPFYPVF---------REQTKYFDKKGYVWAGNAANYVNV------SNPEQYIEMVTSP 205
Query: 199 SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDES 258
+NP G + H + + D +Y + I D +I
Sbjct: 206 NNPEG-LLRHAVIKG---------CKSIYDMVYYWP-------HYTPIKYKA-DEDI--- 244
Query: 259 DDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL--VSSQTQYLLSRM 316
+++++SK G R G +E V + + +TQ ++
Sbjct: 245 --------LLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKV 296
Query: 317 LSDKKFTCNYMKEN--------RKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRH 367
L + K K+LR+R + + L + + +C R
Sbjct: 297 LKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRM 356
Query: 368 LLVSNTFEAEKELWKKIIF------EVGLNISPGSSCHCNEPGWFRICFANITEETLQVA 421
S ++ K W++ +N G + R+ T++
Sbjct: 357 RPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQL 414
Query: 422 LQRIKVFAQS 431
+ +K ++
Sbjct: 415 MYYLKDMVKA 424
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 74/354 (20%), Positives = 146/354 (41%), Gaps = 63/354 (17%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G + ++++ +L K P+ +++T GS+ + + D GD L+ P YP
Sbjct: 67 GILELREKISELYKD--KYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYP 124
Query: 145 GFDRDLKWRPGVEI---VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201
+ + + P+ C T+ +LE A L+ K K ++I +PSNP
Sbjct: 125 CY------KNFIRFLGAKPVFC------DFTVESLEEA------LSDKTKAIIINSPSNP 166
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261
LG + + + F+ +I+SDEIY+G V++ S I D+
Sbjct: 167 LGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEF------------DEN 210
Query: 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL--VSSQTQY-----LLS 314
+ ++ SK ++M G+R+G + SN+E ++ A K+ + +QY
Sbjct: 211 LEKTILINGFSKLYAMTGWRIGYVISNDE-IIEAILKLQQNLFISAPTISQYAALKAFEK 269
Query: 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTF 374
+ + K +R+ +++ +K G + + + +
Sbjct: 270 ETERE-------INSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPN-----IGED- 316
Query: 375 EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
+E K++ E + ++PG + RI +AN + E ++ L+RIK F
Sbjct: 317 --GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLERIKEF 367
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 8e-32
Identities = 65/378 (17%), Positives = 122/378 (32%), Gaps = 58/378 (15%)
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGST 119
++ + + + G P +++L + R F K + + G+
Sbjct: 56 ASSIARLSSPTTCRG----YGPDFGLPALRQKLSEDFYR------GFVDAKEIFISDGAK 105
Query: 120 AANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENA 179
L+ P + P YP + + EI+ + C N F
Sbjct: 106 VDLFRLL-SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDT-- 162
Query: 180 YQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-S 238
+ + + +P+NP GT + +L +++++ I I+ D YS + D S
Sbjct: 163 ---------HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS 213
Query: 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGM-------IYSNNER 291
S I +A I + S SK G R+G Y++
Sbjct: 214 LPKSIFEIPDA-RFCAI-----------EINSFSKPLGFAGIRLGWTVIPQELTYADGHF 261
Query: 292 VVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG 349
V+ + S F S Q LS E R+ ++L L G
Sbjct: 262 VIQDWERFLSTTFNGASIPAQEAGVAGLSILP-----QLEAIHYYRENSDLLRKALLATG 316
Query: 350 IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS-CHCNEPGWFRI 408
+ WV + ++++L+ + E + I+PG G+ R
Sbjct: 317 FEVFGGEHAPYLWVK-----PTQANISDRDLFDFFLREYHIAITPGIGFGRSGS-GFVRF 370
Query: 409 CFANITEETLQVALQRIK 426
E + A +R++
Sbjct: 371 SSLG-KREDILAACERLQ 387
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 67/380 (17%), Positives = 124/380 (32%), Gaps = 57/380 (15%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-------------- 130
G LV R + LT GS A L
Sbjct: 84 GDSAFIDALVGFFNRHYD--WNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESK 141
Query: 131 -DPGDAFLLPTPYYPG----FDRDLKWRPGV-EIVPIHCSSSNG---FRITISALENAYQ 181
L TP Y G + + I + G +R+ ALEN
Sbjct: 142 SVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPA 201
Query: 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241
+ ++ + + P+NP G +T +E+ HL +K I ++ D Y + S
Sbjct: 202 LKEG---RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYS 258
Query: 242 SFISIMEAVMDRNIDESDDLWSRIHIVY--SLSKDFSMPGFRVGMIYSNNERVVSAATKM 299
+ + + SLSK +PG R G+I ++ + V+ A + M
Sbjct: 259 DAHLNWDN----------------NTILCFSLSK-IGLPGMRTGIIVADAK-VIEAVSAM 300
Query: 300 SSFGLV--SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK----VAGIRCL 353
++ + + + + ++++ + E + +K+ + V LK +
Sbjct: 301 NAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIH 360
Query: 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPG--WFRICFA 411
K +F W+ + L +S E+ K + PG + R+ A
Sbjct: 361 KPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIA 420
Query: 412 NITEETLQVALQRIKVFAQS 431
E+TL ++ I +
Sbjct: 421 A-DEQTLIDGIKVIGEVVRE 439
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 8e-31
Identities = 57/370 (15%), Positives = 122/370 (32%), Gaps = 47/370 (12%)
Query: 71 ESLFRELALFQDY---HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA--ANETL 125
++L Y + R ++ N+L+ T GS N
Sbjct: 43 DALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFK--IELKENELISTLGSREVLFNFPS 100
Query: 126 MFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185
P P+Y ++ K+ + + + + N F +++ E
Sbjct: 101 FVLFDYQNPTIAYPNPFYQIYEGAAKF-IKAKSLLMPLTKENDFTPSLNEKELQ------ 153
Query: 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245
+V V++ +P+NP G ++ +EL + + +++DE YS ++P S +
Sbjct: 154 ---EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLE 210
Query: 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG-- 303
+ + +++SLSK S PG R G I + R++ ++
Sbjct: 211 ACMLAGNEAFK-------NVLVIHSLSKRSSAPGLRSGFIAG-DSRLLEKYKAFRAYLGY 262
Query: 304 LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWV 363
++ Q D + + + R ++ K + ++
Sbjct: 263 TSANAIQKASEAAWLDDR----HAEFFRNIYANNLKLARKIFKNTL----IYPYSFYVYL 314
Query: 364 DMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPG--WFRICFANITEETLQVA 421
V N K L++ G+ P N G + R+ L+
Sbjct: 315 P-----VQNGENFAKTLYQ----NEGIITLPALYLGRNRIGADYVRLALV-YDTPLLEKP 364
Query: 422 LQRIKVFAQS 431
L+ I+ + ++
Sbjct: 365 LEIIETYREN 374
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 55/365 (15%), Positives = 115/365 (31%), Gaps = 56/365 (15%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGD---AFLLPTP 141
G L L+ G +P + LT GS +A L A + P
Sbjct: 76 GKTALLNALAVLLRETLG--WDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFP 133
Query: 142 YYPGFDRDLKWRPGVEI-----VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT 196
P + ++ I F+ + + + + ++
Sbjct: 134 LAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGE------ETGMICVS 187
Query: 197 NPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNID 256
P+NP G +T +EL L + I +V D Y G F S + + N
Sbjct: 188 RPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAY-GVPFPGII---FSEARPLWNPN-- 241
Query: 257 ESDDLWSRIHIVY--SLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLV--SSQTQYL 312
I+ SLSK +PG R G+I +N++ ++A M+ + +
Sbjct: 242 ----------IILCMSLSK-LGLPGSRCGIIIANDK-TITAIANMNGIISLAPGGMGPAM 289
Query: 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK----VAGIRCLKSNAGLFCWVDMRHL 368
+ M+ + +R + ++ ++ K +F W+ + L
Sbjct: 290 MCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDL 349
Query: 369 LVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGW-------FRICFANITEETLQVA 421
++ ++ + ++ V PG R+ + + ++
Sbjct: 350 PITTELLYQRLKARGVLM-V-----PGHYFFPGLDKPWPHTHQCMRMNYVP-EPDKIEAG 402
Query: 422 LQRIK 426
++ +
Sbjct: 403 VKILA 407
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 64/352 (18%), Positives = 141/352 (40%), Gaps = 41/352 (11%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G P+ ++EL + + ++ P +V+T G T A + L L DPGD + P Y
Sbjct: 76 GIPELREELAAFLKKYDH--LEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYI 133
Query: 145 GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV-LITNPSNPLG 203
+ G +I + ++G + + LE ++ + KVK + I NP+G
Sbjct: 134 NTLLAFEQL-GAKIEGVPV-DNDG--MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMG 189
Query: 204 TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDESDDLW 262
M+ + L+ + + I+ D Y+ ++ + +D
Sbjct: 190 VTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKA---------LDNEG--- 237
Query: 263 SRIHIVY--SLSKDFSMPGFRVGMIYSNNE---RVVSAATKMSSFGLVSSQTQYLLSRML 317
++ +LSK GFR+G I + E +V+ K + +QY+ L
Sbjct: 238 ---RVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQ--KQPIDFCAPAISQYIALEYL 291
Query: 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLK--VAGIRCLKSNAGLFCWVDMRHLLVSNTFE 375
F +++ ++++++++ L+ + K AG+F + +
Sbjct: 292 KRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGA--DG-- 347
Query: 376 AEKELWKKIIFEVGLNISPGSSCHCNEPG--WFRICFANITEETLQVALQRI 425
+++ G+ + PG + +E G R+ F+ ++E + + ++++
Sbjct: 348 --ISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKL 397
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 1e-29
Identities = 74/412 (17%), Positives = 139/412 (33%), Gaps = 97/412 (23%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNK---LVLTAGSTAA-----NETLMFCLADPGDAF 136
+ +++V+ R P++ L G TAA + L GD
Sbjct: 139 RMLNISEKIVRQYII-REMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKV 197
Query: 137 LLPTPYYPGFDRDLKWRPG-VEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195
+ P + + + +E V I+ S ++ S L+ + +K
Sbjct: 198 AIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKL------KDPAIKIFFC 251
Query: 196 TNPSNPLGTAMTHQELNHLINFSKSKR--IHIVSDEIYSGTVFDSPSSSFISIMEAVMDR 253
NPSNP M + L + N R + I++D++Y D F S+ +
Sbjct: 252 VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD-----FQSLFAICPEN 306
Query: 254 NIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA-TKMSSFGLVSSQTQY- 311
+ +VYS SK F G+R+G++ ++ + V A K+ V+ +Y
Sbjct: 307 TL-----------LVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYR 355
Query: 312 ----------LLSRMLSDKKFTC----------------------------NYMKENRKR 333
+ R+++D + Y ++
Sbjct: 356 SLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQL 415
Query: 334 LRKRKEMLVSGLKVAGIRCLKSNAGLF-CWVDMRHLLVSNTFEAEKELWKKIIF------ 386
+R+R+ L L + +R NA + +D++ + EA E K
Sbjct: 416 IRRRETTLYRELGMPPLRD--ENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLF 473
Query: 387 ----EVGLNISPGS---SCHCNEPGWFRICFANITE---ETLQVALQRIKVF 428
E G+ + PG S + R AN+ E + AL+++
Sbjct: 474 RIADETGIVLLPGRGFGSNRPS----GRASLANLNEYEYAAIGRALRKMADE 521
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 62/386 (16%), Positives = 122/386 (31%), Gaps = 76/386 (19%)
Query: 75 RELALFQDYH------GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA--ANETLM 126
EL+ + Y G + + K G + D + ++ G+ + +
Sbjct: 83 HELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLG--IGDD--DVFVSDGAKCDISR---L 135
Query: 127 FCLADPGDAFLLPTPYYP-----------GFDRDLKWRPGVEIVPIHCSSSNGFRITISA 175
+ + P YP + + I + C+ NGF +S
Sbjct: 136 QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST 195
Query: 176 LENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235
+ + + +P+NP G A T ++L L+ F+K IV D Y+ +
Sbjct: 196 VG-----------RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYM 244
Query: 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGM-------IYSN 288
D S I A + + S S G R+G +YS+
Sbjct: 245 SDDNPRSIFEIPGA-EEVAM-----------ETASFSNYAGFTGVRLGWTVIPKKLLYSD 292
Query: 289 NERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346
V ++ F S+ +Q L+ + M + ++ +++
Sbjct: 293 GFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEA--MHKVIGFYKENTNIIIDTFT 350
Query: 347 VAGIRCLKSNAGLFCWV---DMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS-CHCNE 402
G + WV + +++ +I+ + + +PGS E
Sbjct: 351 SLGYDVYGGKNAPYVWVHFPNQSSW----------DVFAEILEKTHVVTTPGSGFGPGGE 400
Query: 403 PGWFRICFANITEETLQVALQRIKVF 428
G+ R+ E + A +R K
Sbjct: 401 -GFVRVSAFG-HRENILEACRRFKQL 424
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 63/373 (16%), Positives = 119/373 (31%), Gaps = 69/373 (18%)
Query: 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA--ANETLMFCLADPGDAFLL 138
G ++ + G +++ ++ GS A + + +
Sbjct: 108 GAEQGQGALREAVASTFYGHAGR----AADEIFISDGSKCDIAR---IQMMFGSKPTVAV 160
Query: 139 PTPYYP---------GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189
P YP G D I + C+ N F +S + +
Sbjct: 161 QDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAK-----------R 209
Query: 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIME 248
+ +P+NP G A T +L L+NF++ +V D Y+ + + + I
Sbjct: 210 TDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG 269
Query: 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGM-------IYSNNERVVSAATKMSS 301
A + I E S SK G R+G Y+N E V + ++ +
Sbjct: 270 A-DEVAI-E----------TCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMT 317
Query: 302 --FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGL 359
F S+ Q L + M K ++ ++L + G +
Sbjct: 318 TCFNGASNIVQAGGLACLQPEGLKE--MNAMIKFYKENAQILKTTFTEMGFSVYGGDDAP 375
Query: 360 FCWV---DMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC-HCNEPGWFRICFANITE 415
+ WV +++ +I+ + +PGS E G+ R +
Sbjct: 376 YIWVGFPGKPSW----------DVFAEILERCNIVTTPGSGYGPAGE-GFVRASAFG-SR 423
Query: 416 ETLQVALQRIKVF 428
E + A++R K
Sbjct: 424 ENILEAVRRFKEA 436
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 9e-28
Identities = 60/423 (14%), Positives = 130/423 (30%), Gaps = 73/423 (17%)
Query: 35 PSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDA-KKEL 93
++ + + E + + + G ++ F D + EL
Sbjct: 21 SDFVVNLDHGDP----TAYEEYWRKMGDRCTVTIRG---CDLMSYFSDMTNLCWFLEPEL 73
Query: 94 VKLMARIRG--NKVKFDPNKLVLTAGSTAANETLMFCLADPGD----AFLLPTPYYPGFD 147
+ + G + +V+ GST + + L+ + + P+Y +
Sbjct: 74 EDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTY- 132
Query: 148 RDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMT 207
VE S + + L+T+P+NP GT
Sbjct: 133 --------VEETTYVRSGMYKWEGDAWGFDKK---------GPYIELVTSPNNPDGTIRE 175
Query: 208 HQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267
++N ++ D Y + + D +I +
Sbjct: 176 T-----VVNRPDDDEAKVIHDFAYYWPHYTPITRRQ--------DHDI-----------M 211
Query: 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATK---MSSFGLVSSQTQYLLSRMLS------ 318
+++ SK G R+G ++ V + ++S G VS ++Q +++L+
Sbjct: 212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIG-VSKESQVRTAKILNVLKETC 270
Query: 319 -DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAE 377
+ + N+ K R+ ++ R E L +K + L FC + L F
Sbjct: 271 KSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWL 330
Query: 378 KELWKKIIF----EVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433
+ + + G C + R+ + E+ V L+R+ +
Sbjct: 331 GTKEETDLVSELRRHKVMSRAGERCGSD-KKHVRVSMLS-REDVFNVFLERLANMKLIKS 388
Query: 434 PQM 436
+
Sbjct: 389 IDL 391
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 3e-27
Identities = 65/384 (16%), Positives = 139/384 (36%), Gaps = 61/384 (15%)
Query: 71 ESLFRELALFQDY---HGFPDAKKELVKLMARIRGNKVKFDPNKLVL-TAGSTAANETLM 126
++L L + Y G P+ ++ + R R + + D + +L GS A + +
Sbjct: 50 DALTASLHELEKYPLTAGLPELRQACANWLKR-RYDGLTVDADNEILPVLGSREALFSFV 108
Query: 127 FCLADP-----GDAFLLPTPYYP----GFDRDLKWRPGVEIVPIHCSSSNGFRITISAL- 176
+ +P A + P P+Y G EI +C + F ++
Sbjct: 109 QTVLNPVSDGIKPAIVSPNPFYQIYEGAT-----LLGGGEIHFANCPA-PSFNPDWRSIS 162
Query: 177 ENAYQQAQTLNLKVKGVLITN-PSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235
E +++ + ++ P+NP G+ + + + I SDE YS
Sbjct: 163 EEVWKRTK--------LVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIY 214
Query: 236 FD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVS 294
FD + + A + R+ ++ + SLSK ++PG R G + + + ++
Sbjct: 215 FDGNKPLGCLQA-AAQLGRSRQ-------KLLMFTSLSKRSNVPGLRSGFV-AGDAELLK 265
Query: 295 AATKMSSFG--LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352
++ +S Q D++ ++ +NR+ +++ E ++ L+
Sbjct: 266 NFLLYRTYHGSAMSIPVQRASIAAWDDEQ----HVIDNRRLYQEKFERVIPILQ-QVFDV 320
Query: 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS----SCHCNEPG--WF 406
+A + W+ + + + LW+ + + + PG PG +
Sbjct: 321 KLPDASFYIWLKVPD---GDDLAFARNLWQ----KAAIQVLPGRFLARDTEQGNPGEGYV 373
Query: 407 RICFANITEETLQVALQRIKVFAQ 430
RI T A + I +
Sbjct: 374 RIALV-ADVATCVKAAEDIVSLYR 396
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 68/363 (18%), Positives = 135/363 (37%), Gaps = 59/363 (16%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G P K++++KL+ R+ G D + L+ T GS A + + D +L P Y
Sbjct: 86 GDPVLKQQILKLLERMYGIT-GLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYL 144
Query: 145 GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI-TNPS--NP 201
G + V + +G + ++ LE + + I + NP
Sbjct: 145 GAINAFRQY-LANFVVVPL-EDDG--MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDESDD 260
G + ++ L+ ++ + IV D+ Y ++ I +
Sbjct: 201 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK---------IGGPE- 250
Query: 261 LWSRIHIVY--SLSKDFSMPGFRVGMIYSNN---ERVVSAATKMSSFGLVSSQTQYLLSR 315
+V + SK + PG R+GM+ + ++V A K S+ + T L +R
Sbjct: 251 -----RVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQA--KQSADLCSPAITHRLAAR 302
Query: 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGLK-----VAGIRCLKSNAGLFCWV------D 364
L +K + R+++ ++++ L+ + G++ +KS GLF W+ D
Sbjct: 303 YLERYDLL-EQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFD 361
Query: 365 MRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPG--WFRICFANITEETLQVAL 422
+ E KK+ + PG + R+ F +E + +
Sbjct: 362 TWEMF-------EYAKRKKVFY------VPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGI 408
Query: 423 QRI 425
+R+
Sbjct: 409 KRL 411
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 8e-27
Identities = 72/410 (17%), Positives = 136/410 (33%), Gaps = 89/410 (21%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDP-NKLVLTAGSTAANETLMFCLA-----DPGDAFLL 138
+ +K + + + L T G TAA LA GD +
Sbjct: 139 CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAI 198
Query: 139 PTPYYPGFDRDLKWRPGV-EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN 197
P + + R + + V +H N + I + +E + +K +++ N
Sbjct: 199 NEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKL------KDPSIKALIVVN 252
Query: 198 PSNPLGTAMTHQELNHLINF-SKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNID 256
P+NP LN + K+ ++ I+SDE+Y V + F SI V +
Sbjct: 253 PTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN-----FKSIYSVVPYNTM- 306
Query: 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA-TKMSSFGLVSSQTQY---- 311
+VYS SK F G+R+G+I N + V + L +Y
Sbjct: 307 ----------LVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVV 356
Query: 312 -------LLSRMLSDKKF---------------------------------TCNYMKENR 331
+ R+ +D + Y+ R
Sbjct: 357 LDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIAR 416
Query: 332 KRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLL-----------VSNTFEAEKEL 380
K + +R + L ++ +N + +D+ L ++N FE +
Sbjct: 417 KLVSERYDQLHDAMQAPKD-ETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQV-DF 474
Query: 381 WKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430
K+ + G+ + G +PG R+ AN+ E + +++ +
Sbjct: 475 LLKLAEKNGVVLVDGVGFG-AKPGELRVSQANLPTEDYALIGKQVLELLK 523
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-26
Identities = 69/384 (17%), Positives = 147/384 (38%), Gaps = 63/384 (16%)
Query: 65 ELKRNGESLFREL--ALFQDY---HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGST 119
++ + + Q Y GF ++ L+K + + R N +++T+GS
Sbjct: 95 IIRDILVEIMEKYADKALQ-YGTTKGFTPLRETLMKWLGK-RYGIS--QDNDIMITSGSQ 150
Query: 120 AANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENA 179
A + + +PGD ++ P Y + + + + I G + + LE
Sbjct: 151 QALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFY-EPQYIQIPL-DDEG--MKVEILEEK 206
Query: 180 YQQAQTLNLKVKGV-LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD- 237
++ ++ KVK V + NP G M +L+ + +V D+ Y +
Sbjct: 207 LKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSG 266
Query: 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVY--SLSKDFSMPGFRVGMIYSNN---ERV 292
+P + +D ++Y + SK + PGFR+G + + ++
Sbjct: 267 NPEKKIKA---------LDNEG------RVIYLGTFSKILA-PGFRIGWMVGDPGIIRKM 310
Query: 293 VSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV---AG 349
A K S+ + Q + R + ++ E RK + R++ ++ L+ G
Sbjct: 311 EIA--KQSTDLCTNVFGQVVAWRYVDGGYLE-KHIPEIRKFYKPRRDAMLEALEEFMPEG 367
Query: 350 IRCLKSNAGLFCWV------DMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEP 403
++ K G+F WV D + +L E+ + K + + PG + + +
Sbjct: 368 VKWTKPEGGMFIWVTLPDGIDSKKML-------ERAIKKGVAY------VPGEAFYAHRD 414
Query: 404 G--WFRICFANITEETLQVALQRI 425
R+ F + E+ + ++R+
Sbjct: 415 VKNTMRLNFTYVDEDKIMEGIKRL 438
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 9e-23
Identities = 70/394 (17%), Positives = 148/394 (37%), Gaps = 57/394 (14%)
Query: 61 QEAVELKRNGESLFRELALFQDY---HGFPDAKKELVKLMARIRG-----NKVKFDPNKL 112
VE + + + Y G P+ L +L ++ L
Sbjct: 52 VITVENGKTIQFGEEMMKRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDL 111
Query: 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRIT 172
+T+GS + + +PGD LL P Y G + L G I+ + +S+ I
Sbjct: 112 CVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPL-GCNIINV---ASDESGIV 167
Query: 173 ISALENAYQQAQTLNLKVKG-----VLITNPS--NPLGTAMTHQELNHLINFSKSKRIHI 225
+L + + + + K L T P+ NP G ++T + + ++ I
Sbjct: 168 PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI 227
Query: 226 VSDEIYSGTVFDSPSS-SFISIMEAVMDRNIDESDDLWSRIHIVY--SLSKDFSMPGFRV 282
+ D+ Y F+ +F+S +D ++ S SK S G R+
Sbjct: 228 IEDDPYYFLQFNKFRVPTFLS---------MDVDG------RVIRADSFSKIIS-SGLRI 271
Query: 283 GMIYSNN---ERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFT--CNYMKENRKRLRKR 337
G + ERV+ S S+ Q ++S++L + ++ +
Sbjct: 272 GFLTGPKPLIERVILH--IQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQ 329
Query: 338 KEMLVSGLKV---AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP 394
K+ +++ AG+F W+ ++ + + ++ + +K + ++G+ + P
Sbjct: 330 KDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN-----DVKELIEEKAV-KMGVLMLP 383
Query: 395 GSSCHCNEPG---WFRICFANITEETLQVALQRI 425
G++ + + + R F++ + E + VA Q +
Sbjct: 384 GNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVL 417
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 6e-22
Identities = 57/342 (16%), Positives = 117/342 (34%), Gaps = 70/342 (20%)
Query: 106 KFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF-------DRDLKWRPGVEI 158
+ P + + ++PTP YP F R+ +
Sbjct: 78 QARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDA--- 134
Query: 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFS 218
I + +E +Q + +L+ NP NPLG + LN L + +
Sbjct: 135 ---------TGGINLHDVEKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLA 179
Query: 219 KSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP 278
++ DEI++ VFD + + + I + + SK +++
Sbjct: 180 HRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCI-----------TITAPSKAWNIA 228
Query: 279 GFRVGMIYSNNERVVSAATKM--------SSFGLVSSQTQYL-----LSRMLSDKKFTCN 325
G + I +N ++ S+ GL++++ Y L++ ++
Sbjct: 229 GLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVA------- 281
Query: 326 YMKENRKRLRKR-KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKI 384
Y+K N L + + G + A W+D R + +
Sbjct: 282 YLKNNHDFLLHEIPKRI------PGAKITPMQATYLMWIDFRDTTIE------GSPSEFF 329
Query: 385 IFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
I + + ++ G+ + G+ R+ FA + E L+ A+ R+
Sbjct: 330 IEKAKVAMNDGAWFGEDGTGFCRLNFA-TSREVLEEAIDRMA 370
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 5e-21
Identities = 59/399 (14%), Positives = 118/399 (29%), Gaps = 56/399 (14%)
Query: 50 FDLLESWLASNQEAVELKRNGESLFRELALFQDY---HGFPDAKKELVKLMARIRGNKVK 106
D + LA + +G + Y G D ++ L+ +
Sbjct: 48 LDFADELLALPGKGDFKAADGT------DVRN-YGGLDGIVDIRQIWADLLGVPVEQVLA 100
Query: 107 FD------PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160
D ++ + N+++ + ++ P P Y + G E++
Sbjct: 101 GDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF-GFEMIS 159
Query: 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGV-LITNPSNPLGTAMTHQELNHLIN-FS 218
+ + +G + A+E + +VKG+ ++ SNP G +T L +
Sbjct: 160 VPMNE-DG--PDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMET 211
Query: 219 KSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY--SLSKDFS 276
+ +V D Y+ I I+ S SK
Sbjct: 212 AAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN--------RFWAFTSTSKITL 263
Query: 277 MPGFRVGMIYSNNERVVSAATKMSSFGLVSSQ-TQYLLSRMLSDKKFTCNYMKENRKRLR 335
G V ++ E G+ ++ Q +R D + M+++ L
Sbjct: 264 -AGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLA 322
Query: 336 KRKEMLVSGLK-----VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGL 390
+ ++ L + G F +D+ S E KE I
Sbjct: 323 PKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKE--AGIAL---- 376
Query: 391 NISPGSSCHCNEPG----WFRICFANITEETLQVALQRI 425
+ S + R+ + E L+VA+ +
Sbjct: 377 --TGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGV 413
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 1e-20
Identities = 61/339 (17%), Positives = 119/339 (35%), Gaps = 53/339 (15%)
Query: 105 VKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164
FD +V G A + G+A L+ +P YP F R ++ ++V
Sbjct: 85 YSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVR-LNNRKLVSNSLK 143
Query: 165 SSNG-FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223
NG F+I LEN + VK L+ NP NP G + L + + + +
Sbjct: 144 EENGLFQIDFEQLENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHV 198
Query: 224 HIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV 282
+VSDEI+ SF ++ D + ++ S +K F++ G +
Sbjct: 199 ILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFAL-----------VLSSATKTFNIAGTKN 247
Query: 283 GMIYSNNE----RVVSAATKM-----SSFGLVSSQTQYL-----LSRMLSDKKFTCNYMK 328
N + SS G ++++T Y L + + ++
Sbjct: 248 SYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKA-------VLE 300
Query: 329 ENRKRLRKR-KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFE 387
EN + + + ++ +K W+D +++ L+ + +
Sbjct: 301 ENIQFAVEYFAQEA------PRLKVMKPQGTYLIWLDFSDYGLTD-----DALFTLLHDQ 349
Query: 388 VGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
+ ++ GS R+ A + ++ +RI
Sbjct: 350 AKVILNRGSDYGSEGELHARLNIA-APKSLVEEICKRIV 387
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-20
Identities = 66/363 (18%), Positives = 126/363 (34%), Gaps = 73/363 (20%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G+ + + + + P ++++T GS A + + D G LL P Y
Sbjct: 75 GYAPLRAFVAEWIGV--------RPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM 126
Query: 145 G----FDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV-LITNPS 199
G F G + + G + ALE ++ + + + LI +
Sbjct: 127 GAIQAFRLQ-----GPRFLTVPA-GEEG--PDLDALEEVLKRE-----RPRFLYLIPSFQ 173
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDES 258
NP G L+ + + +V D+ Y F + S + R
Sbjct: 174 NPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFE-----LAREAGYP 228
Query: 259 DDLWSRIHIVY--SLSKDFSMPGFRVGMIYSNNE---RVVSAATKMSSFGLVSSQTQYLL 313
++Y S SK S PG RV ++ E ++V A K + Q L+
Sbjct: 229 -------GVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQA--KQGADLHTPMLNQMLV 278
Query: 314 SRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV---AGIRCLKSNAGLFCWV------D 364
+L + F+ ++ R+ R++ + ++ L +R + G+F W+
Sbjct: 279 HELLKE-GFS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLS 336
Query: 365 MRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPG--WFRICFANITEETLQVAL 422
L + L + + F PG N G R+ +A + E + +
Sbjct: 337 AEGLF-------RRALEENVAF------VPGGPFFANGGGENTLRLSYATLDREGIAEGV 383
Query: 423 QRI 425
+R+
Sbjct: 384 RRL 386
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 47/369 (12%), Positives = 103/369 (27%), Gaps = 59/369 (15%)
Query: 85 GFPDAKKELVKLMAR-----IRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLP 139
G P A+ + + N + LVLT ++
Sbjct: 71 GLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVT 130
Query: 140 TPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV-LITNP 198
P Y L+ G E++ + + A+E + VKG+ +
Sbjct: 131 VPGYDRHFLLLQTL-GFELLTV---DMQSDGPDVDAVERLAGT----DPSVKGILFVPTY 182
Query: 199 SNPLGTAMTHQELNHLIN-FSKSKRIHIVSDEIYSGTVF-DSPSSSFISIMEAVMDRNID 256
SNP G ++ ++ L + + I +D+ Y + + ++ + R+
Sbjct: 183 SNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVL--ARDAG 240
Query: 257 ESDDLWSRIHIVY--SLSKDFSMPGFRVGMIYS---NNERVVSAATKM----SSFGLVSS 307
D S SK G +G + S N + +
Sbjct: 241 YPD------RAFVFASTSKITF-AGAGLGFVASSEDNIRWLSKYLGAQSIGPNKV----- 288
Query: 308 QTQYLLSRMLSDKKFTCN-YMKENRKRLRKRKEMLVSGLK------VAGIRCLKSNAGLF 360
Q + L++ M+++ + + + L+ G F
Sbjct: 289 -EQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYF 347
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGW----FRICFANITEE 416
+D + + + + +P + + R+ E
Sbjct: 348 ISLDTAEPVADRVVKLAEA--AGVSL------TPAGATYPAGQDPHNRNLRLAPTRPPVE 399
Query: 417 TLQVALQRI 425
++ A+Q +
Sbjct: 400 EVRTAMQVV 408
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 2e-20
Identities = 59/339 (17%), Positives = 120/339 (35%), Gaps = 53/339 (15%)
Query: 105 VKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164
+ + V +G A ++ PGD L+ P Y F ++ G ++
Sbjct: 81 ARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIE-GNGRRVISSDLI 139
Query: 165 SSNG-FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223
N + + + LE V+ ++ NP NP+G A + +E+ + ++
Sbjct: 140 YENSKYSVNWADLEEKLATP-----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQV 194
Query: 224 HIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV 282
++SDEI+ V + ++ + + + S SK F++
Sbjct: 195 LLISDEIHGDLVLTDEDITPAFTVDWDAKNWVV-----------SLISPSKTFNLAALHA 243
Query: 283 GMIYSNNE----RVVSAATKM-----SSFGLVSSQTQYL-----LSRMLSDKKFTCNYMK 328
N R + + + ++ Y L + ++
Sbjct: 244 ACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQ-------VLR 296
Query: 329 ENRKRLRKR-KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFE 387
+N R+ + + ++ L SNA WVD+ L ++ ++ K + +
Sbjct: 297 DNFAYAREFLAKEV------PEVKVLDSNASYLAWVDISALGMN-----AEDFCKYLREK 345
Query: 388 VGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
GL IS G+ N + RI A +E + +QR+K
Sbjct: 346 TGLIISAGNGYRGNGHEFVRINLA-CPKELVIDGMQRLK 383
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 2e-20
Identities = 71/340 (20%), Positives = 126/340 (37%), Gaps = 56/340 (16%)
Query: 105 VKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIV--PIH 162
K L+ + G A L+ L D ++ P Y F+ +K E++ P+
Sbjct: 86 WKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVK-NNNRELIISPLQ 144
Query: 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR 222
+ + + +EN + VK ++ NP NP+G T EL L +
Sbjct: 145 KLENGNYIMDYEDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHN 197
Query: 223 IHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR 281
+ I+SDEI+S + SI + I + +K F++ G +
Sbjct: 198 VKIISDEIHSDIILKKHKHIPMASISKEFEKNTI-----------TCMAPTKTFNIAGLQ 246
Query: 282 VGMIYSNNE----RVVSAATKM-----SSFGLVSSQTQYL-----LSRMLSDKKFTCNYM 327
+ +E + A T++ + F LV+++ Y L L Y+
Sbjct: 247 SSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLE-------YL 299
Query: 328 KENRKRLRKR-KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIF 386
+ N K E + ++ K WVD L +S ++EL ++
Sbjct: 300 ESNIDFAIKYINENM------PKLKVRKPEGTYLLWVDFSALGLS-----DEELESILVQ 348
Query: 387 EVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
+ + ++ G+S G+ RI A L+ AL RIK
Sbjct: 349 KGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIK 387
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 2e-20
Identities = 62/338 (18%), Positives = 118/338 (34%), Gaps = 52/338 (15%)
Query: 105 VKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164
++ G A + ++ GDA L+ +P Y F R ++ +V
Sbjct: 115 YAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIR-LNDHRLVENSLQ 173
Query: 165 SSNG-FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223
NG F I LE VK L+ +P NP G + +L + K +
Sbjct: 174 IINGRFEIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGV 228
Query: 224 HIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV 282
+VSDEI+ + S ++ + D I I+ S +K F++ G +
Sbjct: 229 ILVSDEIHQDLALFGNTHHSLNTLDASYKDFTI-----------ILSSATKTFNIAGTKN 277
Query: 283 GMIYSNN----ERVVSAATKM-----SSFGLVSSQTQYL-----LSRMLSDKKFTCNYMK 328
N + + G++++Q + L + + ++
Sbjct: 278 SFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKT-------VIE 330
Query: 329 ENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEV 388
N K + K E I+ ++ W+D ++ +L +K+ E
Sbjct: 331 GNIKLVIKELE------AKTKIKVMEPEGTYLVWLDFSAYAIAQ-----PQLSEKLQNEA 379
Query: 389 GLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
+ ++ G+ + R+ A + T+Q AL RI
Sbjct: 380 KVVLNDGAHFGKEGKYFARLNVA-TPKNTVQEALSRII 416
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 3e-20
Identities = 53/339 (15%), Positives = 108/339 (31%), Gaps = 55/339 (16%)
Query: 105 VKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164
D +V L+ ++ G+ ++ TP Y F + ++ ++P+
Sbjct: 83 TAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-GNQRTVMPVALE 141
Query: 165 SSNG-FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223
+ + LE + + K +L+ +P NP G T EL + + + +
Sbjct: 142 KQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGV 196
Query: 224 HIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVG 283
++SDEI+ V+ I ++ S SK F++P
Sbjct: 197 RVISDEIHMDMVW--GEQPHIPWSNVARGDWA-----------LLTSGSKSFNIPALTGA 243
Query: 284 MIYSNNE-------RVVSAATKMSS---FGLVSSQTQYL-----LSRMLSDKKFTCNYMK 328
N + +SS L + Y L + Y+K
Sbjct: 244 YGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRI-------YLK 296
Query: 329 ENRKRLRKR-KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFE 387
+N + + + + W+D+R L + + L K +I +
Sbjct: 297 DNLTYIADKMNAAF------PELNWQIPQSTYLAWLDLRPLNID-----DNALQKALIEQ 345
Query: 388 VGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
+ I PG + G+ R+ L+ + +
Sbjct: 346 EKVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGLI 383
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 8e-20
Identities = 61/339 (17%), Positives = 115/339 (33%), Gaps = 53/339 (15%)
Query: 105 VKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164
+ ++ TAG A + PGD ++ TP Y F +K +I+
Sbjct: 85 WDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-NQERKIIECELL 143
Query: 165 SSNG-FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRI 223
+G + I LE + K +L +P NP+G EL + + +
Sbjct: 144 EKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDL 198
Query: 224 HIVSDEIYSGTVFDSPS-SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV 282
+ SDEI+ + + F SI E + D+ I + SK F++ G +
Sbjct: 199 MLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTI-----------TFTAPSKTFNIAGMGM 247
Query: 283 GMIYSNNE----RVVSAATKM-----SSFGLVSSQTQYL-----LSRMLSDKKFTCNYMK 328
I N R + ++ G + + Y L + +
Sbjct: 248 SNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIK-------VID 300
Query: 329 ENRKRLRKR-KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFE 387
+N++ ++ + I+ W+D R L + K + + +I +
Sbjct: 301 KNQRIVKDFFEVNH------PEIKAPLIEGTYLQWIDFRALKMD-----HKAMEEFMIHK 349
Query: 388 VGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
+ G G+ RI A +Q +L+R+
Sbjct: 350 AQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLERLN 387
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 1e-19
Identities = 52/345 (15%), Positives = 125/345 (36%), Gaps = 55/345 (15%)
Query: 71 ESLFRELALFQDYHGFPDAK-KELVKLMARIRGNKVKFDPNKLVLTAGSTAANETL-MFC 128
+L L + Y PDA L + +AR + + ++ G E++
Sbjct: 44 RALIDNLDCIERY---PDADYFHLHQALAR----HHQVPASWILAGNGE---TESIFTVA 93
Query: 129 LADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNL 188
++ TP + + R L + G EI ++G+++T + LE L
Sbjct: 94 SGLKPRRAMIVTPGFAEYGRALA-QSGCEIRRWSLREADGWQLTDAILE-------ALTP 145
Query: 189 KVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248
+ + + P+NP G L + + KS I+++ DE + +
Sbjct: 146 DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFI------ 199
Query: 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL---V 305
+ ++ +W ++ SL+K +++PG R+G + ++++ ++ +M + V
Sbjct: 200 ----PALKDNPHIW----VLRSLTKFYAIPGLRLGYLVNSDDAAMA---RMRRQQMPWSV 248
Query: 306 SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVD 364
++ L D + + LR+ L ++ + A + +
Sbjct: 249 NALAALAGEVALQDSA----WQQATWHWLREEGARFYQALCQLPLLTVYPGRAN-YLLLR 303
Query: 365 MRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC 409
+ ++ L + + I ++ + ++R+
Sbjct: 304 CER----EDIDLQRRLLTQ-----RILIRSCANYPGLDSRYYRVA 339
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 6e-19
Identities = 56/369 (15%), Positives = 110/369 (29%), Gaps = 62/369 (16%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAA--------------NETLMFCLA 130
G D ++ + + + +V GS+ N++ A
Sbjct: 77 GIADIRELWAEALGL--------PADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSA 128
Query: 131 DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190
+ +L P P Y + G E++ + + G + + + +V
Sbjct: 129 EEKVKWLCPVPGYDRHFTITEHF-GFEMINVPMTD-EG--PDMGVVRELVKDP-----QV 179
Query: 191 KGV-LITNPSNPLGTAMTHQELNHLIN-FSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248
KG+ + NP G + Q L + + IV D Y+ +++E
Sbjct: 180 KGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIE 239
Query: 249 AVMDRNIDESDDLWSRIHIVY--SLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVS 306
+ + + S SK G V S+ E + A+ + G+
Sbjct: 240 FA--QAAGNPN------RFWFMSSTSKIT-HAGSGVSFFASSKENIEWYASHANVRGIGP 290
Query: 307 SQ-TQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK-----VAGIRCLKSNAGLF 360
++ Q ++ D +M ++ L + E ++ L + G F
Sbjct: 291 NKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYF 350
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPG----WFRICFANITEE 416
VD+ S E KE I + S R+ +
Sbjct: 351 ISVDVVPGTASRVVELAKE--AGIAL------TGAGSSFPLHNDPNNENIRLAPSLPPVA 402
Query: 417 TLQVALQRI 425
L+VA+
Sbjct: 403 ELEVAMDGF 411
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 6e-18
Identities = 64/346 (18%), Positives = 132/346 (38%), Gaps = 58/346 (16%)
Query: 71 ESLFRELALFQDYHGFPDAK-KELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL 129
++ + Y PD + L K + +K +VL G+ +E ++
Sbjct: 46 NNIDEGIKNLGVY---PDVNYRRLNKSIEN----YLKLKDIGIVLGNGA---SE-IIELS 94
Query: 130 ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189
+ L+ P Y ++ + K GV +V + I + +
Sbjct: 95 ISLFEKILIIVPSYAEYEINAKKH-GVSVVFSY--LDENMCIDYEDIISKID-------D 144
Query: 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF-DSPSSSFISIME 248
V V+I NP+NP G + ++ H++ ++ K+ I+ DE + F PSSSF+
Sbjct: 145 VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIE--FTGDPSSSFVGE-- 200
Query: 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL---V 305
I L+ I+ +++K F+MPG R G +NN+ + + K+ + +
Sbjct: 201 ------IKNYSCLF----IIRAMTKFFAMPGIRFGYGITNNKEIAA---KIKAKQNPWNI 247
Query: 306 SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI--RCLKSNAGLFCWV 363
+ + L D Y++E+ ++K ++ + L G R +A F
Sbjct: 248 NCFAEMAAINCLKDTN----YIEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLC 302
Query: 364 DMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC 409
+ ++ +++ L K+ + I + + + R
Sbjct: 303 RLENISGEKLYDS---LLKE-----DIVIRRCCNFIGLDDSFVRFA 340
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-16
Identities = 58/345 (16%), Positives = 115/345 (33%), Gaps = 64/345 (18%)
Query: 71 ESLFRELALFQDYHGFPDAK-KELVKLMARIRGNKVKFDPNKLVLTAGSTAANETL-MFC 128
+ L L + Y P+ L +++A+ + D N +++T G T
Sbjct: 35 KHLVENLNCIRHY---PEPDAGTLRQMLAK----RNSVDNNAILVTNGPT---AAFYQIA 84
Query: 129 LADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNL 188
A G L+ P + ++ + E+ +A N+
Sbjct: 85 QAFRGSRSLIAIPSFAEYEDACRMY-EHEVCFYP-------------SNEDIGEADFSNM 130
Query: 189 KVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248
+ NP+NP G + E+ L+N V D+ Y F + +
Sbjct: 131 DF--CWLCNPNNPDGRLLQRTEILRLLN--DHPDTTFVLDQSYVS--FTTEEVIRPAD-- 182
Query: 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL---V 305
I +L +VYS S + +PG R+G I +N + ++++F V
Sbjct: 183 ------IKGRKNLV----MVYSFSHAYGIPGLRIGYIVANKDF----MKRVAAFSTPWAV 228
Query: 306 SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVD 364
++ +L ++ ++ ++ L ++ G+ S F
Sbjct: 229 NALAIEAAKFILIHPA----QFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTT-F---- 279
Query: 365 MRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC 409
L+ EL K ++ E + I S+ + + RI
Sbjct: 280 ---FLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRIT 321
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 6e-14
Identities = 52/331 (15%), Positives = 101/331 (30%), Gaps = 76/331 (22%)
Query: 57 LASN----------QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK 106
+ N Q A + R Y E++ L ++ +
Sbjct: 21 INFNENPLGMSPKAQAAA--RDAVVKANR-------Y---AKN--EILMLGNKL-AAHHQ 65
Query: 107 FDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS 166
+ ++LTAGS+ + A ++P Y +
Sbjct: 66 VEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDG-------------EHFAKIA 112
Query: 167 NGFRITISALEN------AYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS 220
+ L+N + A V + NP+NP GT + I SK
Sbjct: 113 GMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIA-SKP 171
Query: 221 KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH----IVYSLSKDFS 276
+ DE Y E V D + ++ ++ + SK +
Sbjct: 172 ANTMFIVDEAY---------------AEFVNDPRFRSISPMITQGAENIILLKTFSKIHA 216
Query: 277 MPGFRVGMIYSNNERVVSAATKM-SSFGLVSSQTQY--LLSRMLSDKKFTCNYMKENRKR 333
M G RVG ++ V++ + + ++ L S ++D F + ++K
Sbjct: 217 MAGMRVGYAVAHPT-VIALMGRYVAGEK-INFSGVDAALAS--MNDSAF----ITYSKKS 268
Query: 334 LRKRKEMLVSGLKVAGIRCLKSNAGLFCWVD 364
+++L+ L+ + L S F +
Sbjct: 269 NDVSRQILLKALEDLKLPYLPSEGN-FVFHQ 298
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 61/299 (20%), Positives = 124/299 (41%), Gaps = 55/299 (18%)
Query: 56 WLASNQEAVELKRNGESLFR--ELALFQDYHGFPDAK-KELVKLMARIRGNKVKFDPNKL 112
WL +N E Q + +P+ + K +++ A+ G P ++
Sbjct: 33 WLNAN----------EYPTAVEFQLTQQTLNRYPECQPKAVIENYAQYAG----VKPEQV 78
Query: 113 VLTAGSTAANETLMFCLADPG-DAFLLPTP---YYPGFDRDLKWRPGVEIVPIHCSSSNG 168
+++ G+ E L+ +PG DA L P Y + GVE + + +
Sbjct: 79 LVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI----GVECRTV--PTLDN 132
Query: 169 FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSD 228
+++ + + + VK V + +P+NP G + Q+ L+ ++ K I +V+D
Sbjct: 133 WQLDLQGISDKLDG-------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAI-VVAD 184
Query: 229 EIYSGTVFD-SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS 287
E Y + P +S + + + I+ +LSK F++ G R G +
Sbjct: 185 EAY----IEFCPQASLAGWLAE------------YPHLAILRTLSKAFALAGLRCGFTLA 228
Query: 288 NNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346
N E V++ K+ + +S+ + ++ LS + M+E ++ +E L++ LK
Sbjct: 229 NEE-VINLLMKVIAPYPLSTPVADIAAQALSPQGIV--AMRERVAQIIAEREYLIAALK 284
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 8e-12
Identities = 61/349 (17%), Positives = 117/349 (33%), Gaps = 67/349 (19%)
Query: 28 PYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFP 87
Y + I+ L N+ + E+ +A + + L R Y P
Sbjct: 23 AYGA-PQLNVDIR--LNTNENPYPPSEALVADLVAT--VDKIATELNR-------Y---P 67
Query: 88 DA-----KKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTP- 141
+ + EL + + G V + L GS + L+ PG L P
Sbjct: 68 ERDAVELRDELAAYITKQTGVAV--TRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPS 125
Query: 142 --YYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
+P + E + + + FRI + + Q V +T P+
Sbjct: 126 YSMHPILAKGT----HTEFIAVSRGA--DFRIDMDVALEEIRAKQP-----DIVFVTTPN 174
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD-SPSSSFISIMEAVMDRNIDES 258
NP G + ++ +IN + ++ DE Y + SPS S ++ +++
Sbjct: 175 NPTGDVTSLDDVERIINVAPG---IVIVDEAY----AEFSPSPSATTL--------LEKY 219
Query: 259 DDLW--SRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSFGLVSSQTQYLLSR 315
SR ++SK F G R+G + N + A + + +S+ +Q
Sbjct: 220 PTKLVVSR-----TMSKAFDFAGGRLGYFVA-NPAFIDAVMLVRLPYH-LSALSQAAAIV 272
Query: 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVD 364
L ++L + + + L+ G + S + F +
Sbjct: 273 ALRHSA----DTLGTVEKLSVERVRVAARLEELGYAVVPSESN-FVFFG 316
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 6e-11
Identities = 53/482 (10%), Positives = 129/482 (26%), Gaps = 141/482 (29%)
Query: 10 SHGQDSSYFLGW--EAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELK 67
+ L W + + + ++ L N +L ++ +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKF------VEEVLRINY-------KFLM---SPIKTE 101
Query: 68 RNGESLFREL------ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAG---- 117
+ S+ + L+ D F ++ ++R ++ P K VL G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 118 --STAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNG-FRITIS 174
+ A + K + C F + +
Sbjct: 162 GKTWVALDVC----------------------LSYK---------VQCKMDFKIFWLNLK 190
Query: 175 AL---ENAYQQAQTLNLKVKGVLITNPSN----PLGTAMTHQELNHLINFSKSKRIHIVS 227
E + Q L ++ + + L EL L+ + +V
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 228 DEIYSGTVFDSPSSSF-IS--IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGM 284
+ + ++ +F +S I+ + R +D L + + + S+ + +
Sbjct: 251 LNVQNAKAWN----AFNLSCKIL--LTTRFKQVTDFLSA------ATTTHISLDHHSMTL 298
Query: 285 IYSNNERVVSAATKMSSFGL------VSSQTQYLLSRMLSDKKFTCNYMKE-NRKRLRKR 337
+ ++ L + + +++ + D T + K N +L
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 338 KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397
E + L+ + R + L +F +I
Sbjct: 359 IES--------SLNVLEPA-------EYRKMF--------DRL---SVFPPSAHIPTILL 392
Query: 398 CHCNEPGWFRICFANITEETLQVALQRIKVFAQSCNPQMLLLQRRSIIGKWISKLSSSSS 457
+ + ++ + + V + L + S++ K K S+ S
Sbjct: 393 S---------LIWFDVIKSDVMVVVN--------------KLHKYSLVEKQ-PKESTISI 428
Query: 458 YD 459
Sbjct: 429 PS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 65/431 (15%), Positives = 136/431 (31%), Gaps = 111/431 (25%)
Query: 31 QLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAK 90
++P +++M +L + + +W + + + +K S+ EL + +
Sbjct: 191 NCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC- 246
Query: 91 KELVKLMARIRGNKV--KFDPN-KLVLT------AGSTAANETLMFCLADPGDAFLLPTP 141
L+ L ++ K F+ + K++LT +A T L
Sbjct: 247 --LLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL----- 298
Query: 142 YYPGFDRDL--KW---------RPGVEIVPIHCSS-----------------------SN 167
P + L K+ R + P S +
Sbjct: 299 -TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 168 GFRITISALENAYQQAQTLNLKV--KGVLITNPSNPLG---TAMTHQE----LNHLINFS 218
+++ LE A + L V I P+ L + + +N L +S
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 219 ------KSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDR-NIDESDDLWSRI------ 265
K I I IY + ++ +++D NI ++ D I
Sbjct: 416 LVEKQPKESTISI--PSIYL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 266 ----HIVYSLSK-----DFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRM 316
HI + L ++ FR M++ + R + K+ + + +L+
Sbjct: 472 YFYSHIGHHLKNIEHPERMTL--FR--MVFLD-FRFLEQ--KIRHDSTAWNASGSILN-T 523
Query: 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNT--- 373
L KF Y+ +N + + ++ L + S + D+ + +
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK-----YTDLLRIALMAEDEA 578
Query: 374 --FEAEKELWK 382
EA K++ +
Sbjct: 579 IFEEAHKQVQR 589
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 54/323 (16%), Positives = 105/323 (32%), Gaps = 63/323 (19%)
Query: 57 LASN-------QEAVE-LKRNGESLFRELALFQDYHGFPDAK-KELVKLMARIRGNKVKF 107
L+SN ++ + Y PD L K +A +
Sbjct: 37 LSSNENPLGTSKKVAAIQANSSVETEI-------Y---PDGWASSLRKEVAD----FYQL 82
Query: 108 DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTP---YYPGFDRDLKWRPGVEIVPIHCS 164
+ +L+ TAG E L L D ++ TP Y G E+ I
Sbjct: 83 EEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIE----GAEVREI--P 136
Query: 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIH 224
+ + NA + K V I NP+NP G + ++ ++ +
Sbjct: 137 LLQDGEHDLEGMLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLD-RVPSDVL 189
Query: 225 IVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS--LSKDFSMPGFRV 282
+V DE Y +E V + + + +++ + SK + + RV
Sbjct: 190 VVLDEAY---------------IEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARV 234
Query: 283 GMIYSNNERVVSAATKMSS-FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341
G + ++ ++ + F +S Q L + D+ F N +++ +
Sbjct: 235 GYGIA-DKEIIRQLNIVRPPFN-TTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA 292
Query: 342 VSGLKVAGIRCLKSNAGLFCWVD 364
+ ++ +N F +D
Sbjct: 293 ---KRFEKVKLYPANGN-FVLID 311
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 61/322 (18%), Positives = 110/322 (34%), Gaps = 58/322 (18%)
Query: 57 LASN-------QEAVE-LKRNGESLFRELALFQDYHGFPDAK-KELVKLMARIRGNKVKF 107
LASN +A+E L++N Y PD EL +A+ K K
Sbjct: 35 LASNENPFGTPPKAIECLRQNANKAHL-------Y---PDDSMIELKSTLAQ----KYKV 80
Query: 108 DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTP---YYPGFDRDLKWRPGVEIVPIHCS 164
+++ AGS E + + +AFL Y + + G +
Sbjct: 81 QNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQC----GAKCYKT--Q 134
Query: 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIH 224
S L ++K + + P+NPLG + E I ++
Sbjct: 135 SITHNLDEFKKLYET------HKDEIKLIFLCLPNNPLGECLDASEATEFIK-GVNEDCL 187
Query: 225 IVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY-SLSKDFSMPGFRVG 283
+V D Y+ S + E + E D++ + + SK + + G R+G
Sbjct: 188 VVIDAAYNEFASFKDSKKHLEPCELI-----KEFDNV-----LYLGTFSKLYGLGGLRIG 237
Query: 284 MIYSNNERVVSAATKMSS-FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLV 342
+ N ++SA K+ + F VS+ + D +F ++ + + E+
Sbjct: 238 YGIA-NANIISAFYKLRAPFN-VSNLALKAAVAAMDDDEF----TEKTLENNFSQMELYK 291
Query: 343 SGLKVAGIRCLKSNAGLFCWVD 364
K I+ + S F
Sbjct: 292 EFAKKHNIKIIDSYTN-FITYF 312
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 59/335 (17%), Positives = 110/335 (32%), Gaps = 66/335 (19%)
Query: 87 PDAK-KELVKLMARIRGNKVKFDPNKLVLTAGSTAANE---TLMFCLADPGDAFLLPTP- 141
P + L + + V ++L GS +E L A PG + P P
Sbjct: 65 PVPSSEALRAKLKEVMQ--VPAGME-VLLGNGS---DEIISMLALAAARPGAKVMAPVPG 118
Query: 142 --YYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
Y + G+E V + + F + A+ A + Q V + P+
Sbjct: 119 FVMYAMSAQFA----GLEFVGVPLRA--DFTLDRGAMLAAMAEHQP-----AIVYLAYPN 167
Query: 200 NPLGTAMTHQELNHLINFSKSKRIH--IVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDE 257
NP G ++ ++ ++ +V DE Y F S M R + +
Sbjct: 168 NPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAY--QPFAQESW---------MSR-LTD 215
Query: 258 SDDLWSRIHIVY-SLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSFGLVSSQTQYLLSR 315
+L +V ++SK + G R+G + + + + K+ + V+ T+
Sbjct: 216 FGNL-----LVMRTVSK-LGLAGIRLGYVAGDPQ-WLEQLDKVRPPYN-VNVLTEATALF 267
Query: 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGL-KVAGIRCLKSNAGLFCWVDMRHLLVSNTF 374
L + E +LR + + G+ G+ S A F V +
Sbjct: 268 ALEHV----AVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAAN-FLLAR-----VPDAA 317
Query: 375 EAEKELWKK-IIFEVGLNISPGSSCHCNEPGWFRI 408
+ L + ++ I S H R+
Sbjct: 318 QTFDRLLARKVL------IKNVSKMHPLLANCLRV 346
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 49/325 (15%), Positives = 99/325 (30%), Gaps = 75/325 (23%)
Query: 57 LASN-------QEAVE-LKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108
LA N + + R Y P ++M ++
Sbjct: 21 LAFNENPEAVEPRVQAAIAAAAARINR-------Y---PFD--AEPRVMRKL-AEHFSCP 67
Query: 109 PNKLVLTAGSTAANETL-MFCLADPGDAFLLPTP---YYPGFDRDLKWRPGVEIVPIHCS 164
+ L+L G +E F+ P Y G+ I
Sbjct: 68 EDNLMLVRGI---DECFDRISAEFSSMRFVTAWPGFDGYRARIA----VSGLRHFEI--G 118
Query: 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIH 224
++ + + L + V++ NPSNP G A++ EL+ L +R
Sbjct: 119 LTDDLLLDPNDLAQVS--------RDDCVVLANPSNPTGQALSAGELDQLR-----QRAG 165
Query: 225 IVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS--LSKDFSMPGFRV 282
+ + D E +D + + L + + SK + + G R+
Sbjct: 166 KL--------LID----------ETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRL 207
Query: 283 GMIYSNNERVVSAATKM-SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341
G ++ +++A + V + + L L + + + + + ++ +
Sbjct: 208 GALFG-PSELIAAMKRKQWFCN-VGTLDLHALEAALDNDRA----REAHIAKTLAQRRRV 261
Query: 342 VSGLKVAGIRCLKSNAGLFCWVDMR 366
L+ G R S A F V+
Sbjct: 262 ADALRGLGYRVASSEAN-FVLVENA 285
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 60/321 (18%), Positives = 111/321 (34%), Gaps = 78/321 (24%)
Query: 57 LASN----------QEAV--ELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104
L +N +A+ EL +G +L Y P A KL G
Sbjct: 31 LNTNENPYPPSPEVVKAILEELGPDGAALRI-------Y---PSA--SSQKLREVA-GEL 77
Query: 105 VKFDPNKLVLTAGSTAANETLMF---CLADPGDAFLLPTP---YYPGFDRDLKWRPGVEI 158
FDP+ +++ GS +E L A G+ P YY
Sbjct: 78 YGFDPSWIIMANGS---DEVLNNLIRAFAAEGEEIGYVHPSYSYYG-------------- 120
Query: 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFS 218
T + + K +T P+ PLG + + ++ L
Sbjct: 121 --TLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELA--- 175
Query: 219 KSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY-SLSKDFSM 277
+ +V DE Y+ F ++ ++ + +++ +V +LSK +S+
Sbjct: 176 RRCAGMLVLDETYAE--FAESNA---------LEL-VRRHENV-----VVTRTLSKSYSL 218
Query: 278 PGFRVGMIYSNNERVVSAATKM-SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRK 336
G R+G+ + V++A K+ + + Q L D+ Y+ E +R+R+
Sbjct: 219 AGMRIGLAIA-RPEVIAALDKIRDHYN-LDRLAQAACVAALRDQ----AYLSECCRRIRE 272
Query: 337 RKEMLVSGLKVAGIRCLKSNA 357
+E + L+ G + S
Sbjct: 273 TREWFTTELRSIGYDVIPSQG 293
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 6e-08
Identities = 61/320 (19%), Positives = 116/320 (36%), Gaps = 63/320 (19%)
Query: 87 PDAK-KELVKLMARIRGNKVKFDPNKLVLTAGSTAANETL-MFCLADPGDAFLLPTP--- 141
D+ +EL++ + N + + G+ +E + + L D + P
Sbjct: 54 YDSPDEELIEKILSYLDTD-FLSKNNVSVGNGA---DEIIYVMMLM--FDRSVFFPPTYS 107
Query: 142 YYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201
Y F + + G + + + + RI + V I NP+NP
Sbjct: 108 CYRIFAKAV----GAKFLEV--PLTKDLRIPEVNVGEG-----------DVVFIPNPNNP 150
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261
G +E+ ++ K+ + DE Y F S ++ + + ++L
Sbjct: 151 TGHVFEREEIERIL---KTGAFVAL-DEAYYE--FHGES--YVDF--------LKKYENL 194
Query: 262 WSRIHIVY-SLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSFGLVSSQTQYLLSRMLSD 319
V + SK FS+ RVG + + +E+ + A ++ F VS +Q L
Sbjct: 195 -----AVIRTFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRLPFN-VSYVSQMFAKVALDH 247
Query: 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKE 379
++ +E K + + +E + S L+ G R S F +V M E +
Sbjct: 248 RE----IFEERTKFIVEERERMKSALREMGYRITDSRGN-FVFVFMEKEEKERLLEHLRT 302
Query: 380 LWKKII---FEVGLNISPGS 396
K + F G+ I+ G
Sbjct: 303 --KNVAVRSFREGVRITIGK 320
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.98 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.98 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.98 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.98 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.98 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.98 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.98 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.98 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.98 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.98 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.98 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.97 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.97 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.97 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.97 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.97 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.97 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.97 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.97 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.97 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.96 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.96 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.96 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.96 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.96 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.96 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.96 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.96 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.96 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.96 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.96 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.96 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.96 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.96 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.96 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.96 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.95 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.95 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.95 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.95 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.95 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.95 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.95 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.95 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.95 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.95 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.95 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.95 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.95 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.94 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.94 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.94 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.94 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.94 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.94 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.94 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.93 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.93 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.93 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.93 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.93 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.93 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.93 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.92 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.92 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.92 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.92 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.92 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.92 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.91 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.91 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.91 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.9 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.9 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.9 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.89 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.89 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.89 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.89 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.89 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.88 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.88 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.88 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.88 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.88 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.88 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.8 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.87 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.87 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.86 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.85 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.77 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.73 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.72 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.72 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.72 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.65 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.62 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.57 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.57 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.55 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.5 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 80.19 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=461.04 Aligned_cols=431 Identities=71% Similarity=1.197 Sum_probs=351.2
Q ss_pred CcccccccccCCCCCccchhhhhhhcCCCCCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccC
Q 037587 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALF 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 80 (464)
|||.++.+..+.+++.|+..|+.+..++|++..+|.++|+|++++|+++.+.+.+++.+......+..++......+..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y 82 (435)
T 3piu_A 3 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALF 82 (435)
T ss_dssp ---------------CTTHHHHHHHHSBCBTTTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHC
T ss_pred ccchhhhhcccccCcchhhHHHHhhcCCCCcccCCCCeEEeccccccccHHHHHHHHHhCcccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999888654322211122223345789
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 81 ~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
++..|..+||+++++++++.++.++++++++|++|+|+++++..++.+++++||.|+++.|+|..+...+....|++++.
T Consensus 83 ~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~ 162 (435)
T 3piu_A 83 QDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVP 162 (435)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEE
Confidence 99999999999999999987776677889999999999999999999999999999999999999988777333999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+++++|.+|++.|++.+++....+.++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.|.+.
T Consensus 163 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~- 241 (435)
T 3piu_A 163 IHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP- 241 (435)
T ss_dssp EECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS-
T ss_pred eeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-
Confidence 9998777788999999999987655566899999999999999999999999999999999999999999998877765
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
.+.++..+..+.....+....+++++++||||+||++|+|+||++++++.+.+.+.+...++.++++.|.++.+++.+.
T Consensus 242 -~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (435)
T 3piu_A 242 -SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDK 320 (435)
T ss_dssp -CCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCH
T ss_pred -CCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCh
Confidence 5556655544210000000047899999999999999999999999777777777777777778999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
+++.++++++++.++++++.+.+.|++.|+++.++++|+|+|++++............+++..+++++||.|.||..|+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 400 (435)
T 3piu_A 321 KLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC 400 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence 87677888899999999999999999999999999999999999987544433334557888888777999999999987
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..++++||+++..+++++++++++|++++++.+
T Consensus 401 ~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 401 TEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp SSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 778999999986689999999999999998764
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=439.71 Aligned_cols=428 Identities=53% Similarity=1.017 Sum_probs=342.1
Q ss_pred CcccccccccCCCCCccchhhhhhhcCCCCCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccC
Q 037587 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALF 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 80 (464)
.||+++.+....+...++..+..+..++|++..++.++|+|+.|+|+++++.+.+++...+....+. ++...+.....|
T Consensus 1 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~Y 79 (428)
T 1iay_A 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANF 79 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC-----CHHHHHHC
T ss_pred CcccccccccCcccccccchhhhhccCCCCcccCCCceeeeccccchhhHHHHHHHHHhcccccccc-ccccccHhhcCC
Confidence 5899999999888888998898898889999988889999999999999888888887643211000 000112235689
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 81 ~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
+++.|..+||+++|+++++.+|...++++++|++|+|+++++..++.+++++||.|+++.|+|+++...+....|++++.
T Consensus 80 ~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~ 159 (428)
T 1iay_A 80 QDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIP 159 (428)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEE
Confidence 98888999999999999988775544778999999999999999999999999999999999999877554334999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++++.+++|.+|++.+++.+++....++++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.|.+.
T Consensus 160 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~- 238 (428)
T 1iay_A 160 IHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP- 238 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS-
T ss_pred eecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC-
Confidence 9987656788999999999876443445789999999999999999999999999999999999999999998777644
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
.+.++..+..... ......++++++.||||.||++|+|+||++++++.+.+.+.+...++++++++|.++..++++.
T Consensus 239 -~~~~~~~~~~~~~--~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 315 (428)
T 1iay_A 239 -QFVSIAEILDEQE--MTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDE 315 (428)
T ss_dssp -CCCCHHHHHTSGG--GTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred -CccCHHHhccccc--cccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcCh
Confidence 3445555533100 0000147899999999999999999999999666677666666666778999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
+++.+++++.++.++++++++.+.|+++|+++.++++|+|+|++++............+++..+++++||.++||..|+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~ 395 (428)
T 1iay_A 316 KFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC 395 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC
Confidence 75567888899999999999999999989988888788999999976432222223446777777666999999998876
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..++++||+++..+++++++++++|++++++.+
T Consensus 396 ~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 428 (428)
T 1iay_A 396 QEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428 (428)
T ss_dssp SSSSEEEEECSSSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEEecCCHHHHHHHHHHHHHHHhccC
Confidence 556899999986689999999999999987653
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-48 Score=386.82 Aligned_cols=350 Identities=20% Similarity=0.406 Sum_probs=284.9
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.|+++++ ++.+.+++.+... .....|++..|..++|+++++++++.++ +.+++++|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 96 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALA------------QGKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETIV 96 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEEE
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHHEEE
Confidence 46799999998775 4556666554311 1234788888899999999999987666 4467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++.+++.+++++||.|+++.|+|+.+...++.. |++++.++++++++|.+|++++++.+.+ ++++|+
T Consensus 97 t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 169 (385)
T 1b5p_A 97 TVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA-GGVVVEVETLPEEGFVPDPERVRRAITP------RTKALV 169 (385)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEE
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHHhcCC------CCEEEE
Confidence 999999999999999999999999999999999888877 9999999997656788999999987753 789999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
+++||||||.++|.+++++|+++|+++|++||+||+|+++.+++. +.++..+ . . +++++++||||+
T Consensus 170 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~-~---------~-~~~i~~~s~SK~ 235 (385)
T 1b5p_A 170 VNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE---HFSPGRV-A---------P-EHTLTVNGAAKA 235 (385)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC---CCCGGGT-C---------T-TTEEEEEESTTT
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCCHHHc-C---------C-CCEEEEEechhh
Confidence 999999999999999999999999999999999999998766532 2344433 1 2 689999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 352 (464)
||++|+|+||++++ +.+.+.+...... ++++.+.|.++..+++..+...+++++.++.++++++.+.+.|+++|+++
T Consensus 236 ~~~~G~RiG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 314 (385)
T 1b5p_A 236 FAMTGWRIGYACGP-KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKA 314 (385)
T ss_dssp TTCGGGCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred cCCcccceEEEEeC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 99999999999995 4455555444332 35788999999888876211135688889999999999999999889999
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.++++|+|+|++++.. . .+..+++..++ ++||.++||..|+. ++++||+++ .+++++++++++|+++++
T Consensus 315 ~~~~~~~~~~~~~~~~-~----~~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~-~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 315 VRPSGAFYVLMDTSPI-A----PDEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYA-TSEENLRKALERFARVLG 383 (385)
T ss_dssp CCCSBTTEEEEECTTT-C----SSHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHHGGGGC-
T ss_pred cCCCeeEEEEEecCCC-C----CCHHHHHHHHH-HCCeEEecccccCC--CCeEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 8999999999998631 1 11235777776 78999999999864 679999999 589999999999987764
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=390.53 Aligned_cols=348 Identities=18% Similarity=0.310 Sum_probs=283.3
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCChhhhcccCC
Q 037587 76 ELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-DPGDAFLLPTPYYPGFDRDLKWRP 154 (464)
Q Consensus 76 ~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~~ 154 (464)
....|++..|..++|+++++++++.+| .++++++|++|+|+++++..++.+++ ++||.|+++.|+|+.+...+...
T Consensus 126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~- 202 (500)
T 3tcm_A 126 ATGAYSHSQGIHGLRDAIASGIASRDG--FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALH- 202 (500)
T ss_dssp CSSSCCCTTCCHHHHHHHHHHHHHHHS--SCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHT-
T ss_pred cCCCcCCCcChHHHHHHHHHHHHhhcC--CCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHc-
Confidence 456899999999999999999988776 45788999999999999999999998 89999999999999999988877
Q ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 155 GVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 155 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
|++++.++++++++|.+|++.|++.+++....+.++++|+++|||||||.++|.+++++|+++|+++|+++|+||+|.++
T Consensus 203 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~ 282 (500)
T 3tcm_A 203 GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQEN 282 (500)
T ss_dssp TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcccc
Confidence 99999999998888999999999999876555668999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEe---cCHHHHHHHHHhc-ccCCCChHH
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYS---NNERVVSAATKMS-SFGLVSSQT 309 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~---~~~~~~~~~~~~~-~~~~~s~~~ 309 (464)
.|++. ..+.++..+..+++. .....++++++||||.| |++|+|+||+++ +++ +.+.+.+.. ...+.+.+.
T Consensus 283 ~~~~~-~~~~s~~~~~~~~~~---~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 357 (500)
T 3tcm_A 283 IYVDN-KKFHSFKKIVRSLGY---GEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAP-VREQIYKIASVNLCSNITG 357 (500)
T ss_dssp BCCTT-CCCCCHHHHHHHTTC---SSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTT-HHHHHHHHHHTTCCCCHHH
T ss_pred ccCCC-CCCCcHHHHHHHhcc---ccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHH-HHHHHHHHHhcccCCCHHH
Confidence 88542 134566555443210 01224689999999999 899999999987 444 444444433 345578899
Q ss_pred HHHHHHHcCCch--------hhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecC--ccc-c---cCCh
Q 037587 310 QYLLSRMLSDKK--------FTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMR--HLL-V---SNTF 374 (464)
Q Consensus 310 q~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~--~~~-~---~~~~ 374 (464)
|.++..++..+. + .++.++.++.++++++.+.+.|+++ |+++.++++|+|+|+++. ... . ....
T Consensus 358 q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~ 436 (500)
T 3tcm_A 358 QILASLVMNPPKASDESYASY-KAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANK 436 (500)
T ss_dssp HHHHHHHHSCCCSSSTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTS
T ss_pred HHHHHHHhcCccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCC
Confidence 999999998532 3 4567778889999999999999998 999999999999996553 210 0 0011
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..+..++..+++++||.++||+.|+. .+.++|||+++ .+++++++++++|++++++..
T Consensus 437 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 437 APDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFHEAFM 495 (500)
T ss_dssp CHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHH
Confidence 12334567788889999999999985 45678999999 689999999999999987653
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-47 Score=379.64 Aligned_cols=346 Identities=16% Similarity=0.162 Sum_probs=269.2
Q ss_pred CceEEeecccc------cccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 36 SGIIQMGLAEN------QLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 36 ~~~i~l~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
.++|+|++++. +.+++.+.++.. .... -.....|.+..|.++||+++++++.+..+ ..+++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~ 95 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTE----------NYKEKPYLLGNGTEDFSTLTQNLIFGNNS--KYIED 95 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHH----------HCCCCCCCTTSSCHHHHHHHHHHHHCSSC--TTTTT
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcC----------CCCCCCCCCCCCcHHHHHHHHHHHcCCCC--ccccc
Confidence 47899999962 223566776654 3100 13456899999999999999999965433 23456
Q ss_pred Cc--EEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 110 NK--LVLTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 110 ~~--i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
++ +++|+|+++++.+++.+++. | |+|++++|+|+.|...++.. |++++.+|+..+++|.+|++.|++.+.+
T Consensus 96 ~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~--- 170 (405)
T 3k7y_A 96 KKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESR-GFNLKYINFFDYNLIDINYDLFLNDLRN--- 170 (405)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTT-TCEEEEECCEETTTTEECHHHHHHHHHH---
T ss_pred cceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHc-CCeEEEEeccccccCCcCHHHHHHHHHh---
Confidence 64 59999999999999999987 8 99999999999999998877 9999999984345789999999999875
Q ss_pred cCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 186 LNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 186 ~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
.++.+++++++| |||||.++|.+++++|+++|+++++++|+||+|.++.+++......++..+.. ..++
T Consensus 171 -~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~---------~~~~ 240 (405)
T 3k7y_A 171 -IPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE---------KNIA 240 (405)
T ss_dssp -SCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT---------TTCC
T ss_pred -CCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh---------cCCc
Confidence 124567777665 99999999999999999999999999999999999876532101223333333 2378
Q ss_pred EEEEcCCCcCCCCCccEEEEEEe--cCHHHHHHH----HHh--cccCCCChHHHHHHHHHcCCchhh---HHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYS--NNERVVSAA----TKM--SSFGLVSSQTQYLLSRMLSDKKFT---CNYMKENRKR 333 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~--~~~~~~~~~----~~~--~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~ 333 (464)
+++++||||+||++|+|+||+++ +++.+.+.+ ... ..+...+.+.|.++..++.++.+. .+++++.++.
T Consensus 241 ~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~ 320 (405)
T 3k7y_A 241 FSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQR 320 (405)
T ss_dssp EEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 455443322 222 233445678999999999886432 4556777888
Q ss_pred HHHHHHHHHHHHH----hCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 037587 334 LRKRKEMLVSGLK----VAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGW 405 (464)
Q Consensus 334 ~~~~~~~l~~~l~----~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 405 (464)
++++|+.+.+.|+ ++| +++.++++|||+|++++. +++.+| +++||.+.||.
T Consensus 321 ~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----------~~~~~L-~~~gV~v~p~~--------- 379 (405)
T 3k7y_A 321 ITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----------KIAEHL-KTHHIYIINNG--------- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----------GGTTTT-TTTTEECCTTS---------
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----------HHHHHH-HHCCEeecCCC---------
Confidence 9999999999999 776 578889999999998864 134556 78999999852
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 406 FRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 406 ~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
|||++.++++++++++++|+++++.
T Consensus 380 -Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 -RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp -EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred -eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 9999878899999999999998864
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=373.63 Aligned_cols=353 Identities=17% Similarity=0.282 Sum_probs=288.0
Q ss_pred CCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC-CCCC
Q 037587 33 HNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK-FDPN 110 (464)
Q Consensus 33 ~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~~ 110 (464)
....++|||+.|+++++ ++.+.+++.+. ......|++..|..++|+++++++.+.++ ++ ++++
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~ 91 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHPTPKVITDALTAS-------------LHELEKYPLTAGLPELRQACANWLKRRYD--GLTVDAD 91 (396)
T ss_dssp CTTCCCEECSCCSCCSCCCHHHHHHHHHT-------------GGGGGSCCCTTCCHHHHHHHHHHHHHHTT--TCCCCTT
T ss_pred ccCCCeEEeCCcCCCCCCCHHHHHHHHHH-------------hhhccCCCCCCCcHHHHHHHHHHHHHhcC--CCCCCCC
Confidence 34567899999999886 46677776664 23457899888999999999999988776 33 5688
Q ss_pred -cEEEeCChHHHHHHHHHHhcCCC-----CeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 111 -KLVLTAGSTAANETLMFCLADPG-----DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 111 -~i~it~G~~~al~~~~~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
+|++|+|+++++..++.+++++| |.|+++.|+|..+...+... |++++.++++ +++|.+|++.+++++.+
T Consensus 92 ~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~g~~~d~~~l~~~~~~-- 167 (396)
T 3jtx_A 92 NEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLG-GGEIHFANCP-APSFNPDWRSISEEVWK-- 167 (396)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHT-TCEEEEEECC-TTTCCCCGGGSCHHHHH--
T ss_pred CeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHc-CCEEEEeecC-CCCCccCHHHHHHhhcc--
Confidence 99999999999999999999997 79999999999998888777 9999999984 46788999999999876
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.+.......+ +...++
T Consensus 168 ----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~ 236 (396)
T 3jtx_A 168 ----RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN--KPLGCLQAAAQL-----GRSRQK 236 (396)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC--CCCCHHHHHHHT-----TCCCTT
T ss_pred ----CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCchHHhhhhhc-----ccccCc
Confidence 899999999999999999999999999999999999999999998777653 223333222111 012478
Q ss_pred EEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLV 342 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (464)
+++++||||.||++|+|+||++++ +.+.+.+..... .++++++.|.++..++++.+ ++++.++.++++++.+.
T Consensus 237 ~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~ 311 (396)
T 3jtx_A 237 LLMFTSLSKRSNVPGLRSGFVAGD-AELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQ----HVIDNRRLYQEKFERVI 311 (396)
T ss_dssp EEEEEESTTTSSCGGGCCEEEEEC-HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccCCcccceEEEEeC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999984 455555544332 24578899999999988644 47888889999999999
Q ss_pred HHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEeecCCHH
Q 037587 343 SGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC------NEPGWFRICFANITEE 416 (464)
Q Consensus 343 ~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Ris~~~~~~e 416 (464)
+.|.+. +.+..+++|+|+|++++.. ...+++..+++++||.+.||..|+. ...+++||+++. +++
T Consensus 312 ~~l~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~ 382 (396)
T 3jtx_A 312 PILQQV-FDVKLPDASFYIWLKVPDG-------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVA 382 (396)
T ss_dssp HHHTTT-SCCCCCSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHH
T ss_pred HHHHhc-CCccCCCeeEEEEEECCCC-------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHH
Confidence 999876 5667788899999999851 1235778887788999999998875 246899999986 999
Q ss_pred HHHHHHHHHHHHH
Q 037587 417 TLQVALQRIKVFA 429 (464)
Q Consensus 417 ~l~~~l~~l~~~l 429 (464)
++++++++|++++
T Consensus 383 ~i~~~l~~l~~~l 395 (396)
T 3jtx_A 383 TCVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-46 Score=376.53 Aligned_cols=359 Identities=18% Similarity=0.303 Sum_probs=288.0
Q ss_pred CceEEeecccccc---cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 36 SGIIQMGLAENQL---SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 36 ~~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
+++|+|+.+.+.. +++.+.+++.+..... ......|++..|..+||++|++++.+.+| ++ ++++|
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~---------~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~-~~~~v 143 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKY---------ADKALQYGTTKGFTPLRETLMKWLGKRYG--IS-QDNDI 143 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHS---------HHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CC-TTSEE
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhh---------hHHHhCCCCCCCcHHHHHHHHHHHHHhcC--cC-ChhhE
Confidence 4689998875432 5666777666542210 01245798888999999999999977666 33 78899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||.|+++.|+|.++...+... |++++.++++++ .+|+++|++.++.....+.++++
T Consensus 144 ~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~ 219 (448)
T 3aow_A 144 MITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFY-EPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKV 219 (448)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEE
T ss_pred EEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeE
Confidence 99999999999999999999999999999999999888876 999999998753 38999999988621112237888
Q ss_pred E-EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 193 V-LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 193 v-il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
| ++++|+||||.++|.+++++|+++|+++|++||+||+|.++.|++. .+.++..+. ..+++++++||
T Consensus 220 v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~--~~~~~~~~~----------~~~~vi~~~S~ 287 (448)
T 3aow_A 220 VYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN--PEKKIKALD----------NEGRVIYLGTF 287 (448)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC--CCCCTGGGC----------TTSCEEEEEES
T ss_pred EEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHhcC----------CCCCEEEEccc
Confidence 7 4689999999999999999999999999999999999999877654 344554441 23689999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA- 348 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 348 (464)
||+|| +|+|+||++++ +.+.+.+..... .+++++++|.++..+|++..+ .+++++.++.++++++.+.+.|++.
T Consensus 288 SK~~~-~GlriG~v~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~ 364 (448)
T 3aow_A 288 SKILA-PGFRIGWMVGD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFM 364 (448)
T ss_dssp TTTTC-GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhcc-ccccEEEEEeC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 99999999996 455555544322 245688999999999987654 6788999999999999999999885
Q ss_pred --CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHH
Q 037587 349 --GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETLQVALQR 424 (464)
Q Consensus 349 --g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~ 424 (464)
|+.+..+.+|+|+|++++...+ ..+++..++++ ||.+.||..|+.. .++++||+++..+++++++++++
T Consensus 365 ~~g~~~~~p~~g~~~~v~~~~~~~------~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~ 437 (448)
T 3aow_A 365 PEGVKWTKPEGGMFIWVTLPDGID------SKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKR 437 (448)
T ss_dssp CTTCEECCCSBSSEEEEECSTTCC------HHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHH
T ss_pred CCCeEEeCCCccEEEEEEcCCCCC------HHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHH
Confidence 7888888889999999975321 23577777654 9999999988653 46799999987678999999999
Q ss_pred HHHHHHhh
Q 037587 425 IKVFAQSC 432 (464)
Q Consensus 425 l~~~l~~~ 432 (464)
|++++++.
T Consensus 438 L~~~l~~~ 445 (448)
T 3aow_A 438 LAETIKEE 445 (448)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=371.54 Aligned_cols=358 Identities=20% Similarity=0.404 Sum_probs=291.6
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc-EE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK-LV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~-i~ 113 (464)
.++|+|+.+.++++ ++.+.+++.+... .....|++..|..++|+++++++.+.+| +++++++ |+
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~ 91 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALD------------KGLTHYGPNIGLLELREAIAEKLKKQNG--IEADPKTEIM 91 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHh------------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 46799999998764 4666666655421 1134688878899999999999987766 3457889 99
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|++++|+|+++...+... |++++.++++++++|.+|++.+++.+++ ++++|
T Consensus 92 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 164 (389)
T 1gd9_A 92 VLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRAL 164 (389)
T ss_dssp EESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-TCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCCccCCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999888877 9999999987545688999999988754 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. ...++..+.. ..+++++++||||
T Consensus 165 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~s~sK 233 (389)
T 1gd9_A 165 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDG---------MFERTITVNGFSK 233 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTT---------CGGGEEEEEESTT
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CCCCHhhccC---------CCCCEEEEecChh
Confidence 9999999999999999999999999999999999999998766543 2334444311 1368999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.+|++|+|+||++++ +.+.+.+..... .++++++.|.++..+++.... .+++++.++.++++++.+.+.|+++|++
T Consensus 234 ~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 311 (389)
T 1gd9_A 234 TFAMTGWRLGFVAAP-SWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLP 311 (389)
T ss_dssp TTTCGGGCCEEEECC-HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCcccceEEEEEC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 999999999999995 455555554433 245788999999999987432 3368888999999999999999998998
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++++|+|+|++++... .+..+++..+++++||.+.||..|+...++++||+++. +++++++++++|++++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 312 TVKPKGAFYIFPRIRDTG-----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp CCCCCBTTEECCBCGGGT-----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCCeeeEEEEeccCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 888889999999987410 01235777776578999999998875557899999996 899999999999999876
Q ss_pred hC
Q 037587 432 CN 433 (464)
Q Consensus 432 ~~ 433 (464)
.+
T Consensus 386 ~~ 387 (389)
T 1gd9_A 386 RK 387 (389)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=378.10 Aligned_cols=361 Identities=20% Similarity=0.304 Sum_probs=287.3
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i 112 (464)
+.++|||+.+.++++ ++.+.+++.+.... .....|++..|..++|+++|+++.+.+| +++++ ++|
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~ia~~~~~~~g--~~~~~~~~v 102 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQR-----------EDTHGYSTSRGIPRLRRAISHWYRDRYD--VQIDPESEA 102 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC--------------------CTTCCHHHHHHHHHHHHHHHC--CCCCTTTSE
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCcCE
Confidence 456899999998764 56677766654211 1245788778899999999999987766 34567 799
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||.|+++.|+|+++...+... |++++.++++++++|.+|++.+++.+.. ++++
T Consensus 103 ~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~ 175 (412)
T 2x5d_A 103 IVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIA-GAQVRSVPLVPGIDFFNELERAIRESIP------KPRM 175 (412)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHH-TCEEEEEECSTTSCHHHHHHHHHHTEES------CCSE
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCCccCCCCCHHHHHHhccc------CceE
Confidence 99999999999999999999999999999999998888876 9999999988655677888888887642 7889
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+.. ..+++++++|||
T Consensus 176 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~---------~~~~~i~~~s~s 244 (412)
T 2x5d_A 176 MILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW--KAPSIMQVPG---------AKDIAVEFFTLS 244 (412)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTT---------GGGTEEEEEECC
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCChhhccC---------ccCcEEEEecCc
Confidence 99999999999999999999999999999999999999998776543 3344444411 136899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.||++|+|+||++++ +.+.+.+..... .++++++.|.++..+++.. .+++++.++.++++++.+.+.|+++|+
T Consensus 245 K~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~ 320 (412)
T 2x5d_A 245 KSYNMAGWRIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIARQYQQRRDVLVKGLREAGW 320 (412)
T ss_dssp -CCSCTTSCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCCcccceEEEEcC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999994 455555544332 3567889999999888763 245788888899999999999998899
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
++.++++|+|+|++++..... .+..+++..+++++||.++||..|+...++++||+++. +++++++++++|+++++
T Consensus 321 ~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~ 396 (412)
T 2x5d_A 321 MVENPKASMYVWAKIPEPYAH---LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFR 396 (412)
T ss_dssp CCCCCSBSSEEEEECCTTTGG---GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred EecCCCeeeEEEEEcCCccCC---CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 888888999999999743210 02335778877778999999998875557899999996 89999999999999998
Q ss_pred hhCc
Q 037587 431 SCNP 434 (464)
Q Consensus 431 ~~~~ 434 (464)
+...
T Consensus 397 ~~~~ 400 (412)
T 2x5d_A 397 ADGL 400 (412)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 8664
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=374.30 Aligned_cols=353 Identities=21% Similarity=0.307 Sum_probs=288.4
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i~ 113 (464)
.++|||+.+.++++ ++.+.+++.+.... .....|++..|..++|+++|+++.+.+| +++++ ++|+
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~v~ 113 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTI-----------PENQKYGAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVC 113 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTC-----------HHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCcccEE
Confidence 45899999998874 46677766654211 1245788877899999999999987766 33555 7999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|+++.|+|.++...+... |++++.+++++ ++|.+|+++|++.+.. ++++|
T Consensus 114 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 185 (404)
T 2o1b_A 114 ILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLA-DGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLI 185 (404)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHT-TCEEEEEECCT-TTCCCCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCc-ccCcCCHHHHHHhhcc------CceEE
Confidence 9999999999999999999999999999999999888877 99999999875 5678899999998865 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ..++..+.. ..+++++++||||
T Consensus 186 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~---------~~~~~i~~~s~sK 253 (404)
T 2o1b_A 186 YLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK---NPSILASEN---------GKDVAIEIYSLSK 253 (404)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSC---CCCGGGSTT---------HHHHEEEEEESTT
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCC---------CCCCEEEEEecch
Confidence 9999999999999999999999999999999999999998766442 234333321 1267899999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.||++|+|+||++++ +.+.+.+..... .++++.+.|.++..++++. .+++++.++.++++++.+.+.|+++|+.
T Consensus 254 ~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 329 (404)
T 2o1b_A 254 GYNMSGFRVGFAVGN-KDMIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKADLP 329 (404)
T ss_dssp TTTCGGGCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hccCchhheEeEecC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 999999999999984 455555544332 2457889999998888763 4567888899999999999999998999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++++|+|+|++++...+ ..+++..+++++||.++||..|+...++++||+++. +++++++++++|++++++
T Consensus 330 ~~~~~~g~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 330 FVHAKGGIYVWLETPPGYD------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp EECCCBSSEEEEECCTTCC------HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGG
T ss_pred ecCCCcceEEEEeCCCCCC------HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 8888999999999974221 235777877678999999998875457899999996 889999999999998866
Q ss_pred h
Q 037587 432 C 432 (464)
Q Consensus 432 ~ 432 (464)
+
T Consensus 403 ~ 403 (404)
T 2o1b_A 403 Y 403 (404)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=381.08 Aligned_cols=359 Identities=20% Similarity=0.307 Sum_probs=288.3
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+.+.+.++ ++.+.+++.+.... .....|++..|.++||+++++++.+.+| .++++++|+
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~v~ 122 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI-----------PMVNQYSPTRGRPSLINSLIKLYSPIYN--TELKAENVT 122 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS-----------GGGGSCCCTTCCHHHHHHHHHHHTTTTT--SCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC-----------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 457899999987664 46677766654210 1246798888999999999999987665 346778999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCC----------CcccCHHHHHHHHHHH
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSN----------GFRITISALENAYQQA 183 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~----------~~~~d~~~l~~~i~~~ 183 (464)
+|+|+++++..++.+++++||+|++++|+|+.+...+... |.+++.+++++++ +|.+|++.|++.+..
T Consensus 123 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~- 200 (447)
T 3b46_A 123 VTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELC-GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS- 200 (447)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT-
T ss_pred EeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc-
Confidence 9999999999999999999999999999999999988877 9999999987543 578999999987753
Q ss_pred hhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhh-hhccCcCCCCCCC
Q 037587 184 QTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEA-VMDRNIDESDDLW 262 (464)
Q Consensus 184 ~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~ 262 (464)
++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.|++. +.++..+ .. ..
T Consensus 201 -----~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~---------~~ 263 (447)
T 3b46_A 201 -----KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS---FTRIATLSPE---------IG 263 (447)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCGGGSCHH---------HH
T ss_pred -----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC---CcCHHHcCCC---------CC
Confidence 789999999999999999999999999999999999999999998777643 2343333 11 12
Q ss_pred CcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHH
Q 037587 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEM 340 (464)
Q Consensus 263 ~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (464)
++++++.|+||.||++|+|+||+++.++.+.+.+.... ..++.+++.|.++..+|+.... .+++++.++.++++++.
T Consensus 264 ~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~~~~~~~~ 342 (447)
T 3b46_A 264 QLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQEYINKFKI 342 (447)
T ss_dssp TTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999993444545444322 2345788999998888876533 55688889999999999
Q ss_pred HHHHHHhCCCeeecCCccEEEEEecCcccccCC---------hhHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCeE
Q 037587 341 LVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNT---------FEAEKELWKKIIFEVGLNISPGSSCHCN-----EPGWF 406 (464)
Q Consensus 341 l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~---------~~~~~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~ 406 (464)
+.+.|+++|+++..+++|+|+|++++....... .....+++..+++++||.+.||+.|+.. ..+++
T Consensus 343 l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~i 422 (447)
T 3b46_A 343 FTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLL 422 (447)
T ss_dssp HHHHHHHHTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEE
T ss_pred HHHHHHHCCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEE
Confidence 999999999998888999999999975310000 0234467888887789999999988642 26799
Q ss_pred EEEeecCCHHHHHHHHHHHHH
Q 037587 407 RICFANITEETLQVALQRIKV 427 (464)
Q Consensus 407 Ris~~~~~~e~l~~~l~~l~~ 427 (464)
||+++. +++++++++++|++
T Consensus 423 Rls~~~-~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 423 RFAVCK-DDAYLENAVERLKL 442 (447)
T ss_dssp EEECCS-CHHHHHHHHHHGGG
T ss_pred EEEEeC-CHHHHHHHHHHHHH
Confidence 999995 89999999999987
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=375.16 Aligned_cols=359 Identities=21% Similarity=0.331 Sum_probs=291.1
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i 112 (464)
..++|+|+.+.+.++ ++.+.+++.+.... .....|++..|..++|+++++++++.++ .++++ ++|
T Consensus 22 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~la~~~~~~~~--~~~~~~~~i 88 (410)
T 3e2y_A 22 DPSVVNLGQGFPDISPPSYVKEELSKAAFI-----------DNMNQYTRGFGHPALVKALSCLYGKIYQ--RQIDPNEEI 88 (410)
T ss_dssp STTSEECSSCCCCSCCCHHHHHHHHHHHTC-----------GGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSE
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC-----------ccccCCCCCCChHHHHHHHHHHHHHHhC--CCCCCCCCE
Confidence 357899999998875 56677776664211 2356899888899999999999998877 44677 899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC---------CCCcccCHHHHHHHHHHH
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS---------SNGFRITISALENAYQQA 183 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~---------~~~~~~d~~~l~~~i~~~ 183 (464)
++|+|+++++..++.+++++||.|+++.|+|..+...+... |.+++.+++++ +.+|.+|++++++.+.+
T Consensus 89 ~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~- 166 (410)
T 3e2y_A 89 LVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMA-GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS- 166 (410)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT-
T ss_pred EEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEeccccccccccccccCCcCCHHHHHhhcCC-
Confidence 99999999999999999999999999999999999888877 99999998762 24677899999987753
Q ss_pred hhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCC
Q 037587 184 QTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS 263 (464)
Q Consensus 184 ~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (464)
++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+.. ..+
T Consensus 167 -----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~---------~~~ 230 (410)
T 3e2y_A 167 -----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPG---------MWE 230 (410)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTT---------CGG
T ss_pred -----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCC---------ccC
Confidence 789999999999999999999999999999999999999999998877654 4445554432 347
Q ss_pred cEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCC-----chhhHHHHHHHHHHHHH
Q 037587 264 RIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSD-----KKFTCNYMKENRKRLRK 336 (464)
Q Consensus 264 ~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~ 336 (464)
++++++||||.||++|+|+||++++++ +.+.+.... ..++++++.|.++..++.+ ..+ .+++++.++.+++
T Consensus 231 ~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 308 (410)
T 3e2y_A 231 RTITIGSAGKTFSVTGWKLGWSIGPAH-LIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP-ECYFNSLPKELEV 308 (410)
T ss_dssp GEEEEEEHHHHSSCGGGCCEEEECCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHH
T ss_pred eEEEEecchhhcCCCCceEEEEEECHH-HHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHH
Confidence 899999999999999999999999554 444444433 2455788999998888863 112 4457888899999
Q ss_pred HHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCC-----hhHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCeE
Q 037587 337 RKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNT-----FEAEKELWKKIIFEVGLNISPGSSCHCN-----EPGWF 406 (464)
Q Consensus 337 ~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~-----~~~~~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~ 406 (464)
+++.+.+.|+++|+.+..+++|+|+|++++....... .....+++..+++++||.+.||+.|+.. ..+++
T Consensus 309 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~i 388 (410)
T 3e2y_A 309 KRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLV 388 (410)
T ss_dssp HHHHHHHHHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEE
T ss_pred HHHHHHHHHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEE
Confidence 9999999999999999899999999999975322110 0123357788888889999999988643 35899
Q ss_pred EEEeecCCHHHHHHHHHHHHH
Q 037587 407 RICFANITEETLQVALQRIKV 427 (464)
Q Consensus 407 Ris~~~~~~e~l~~~l~~l~~ 427 (464)
||+++. +++++++++++|++
T Consensus 389 Ris~~~-~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 389 RFCFIK-KDSTLDAAEEIFRA 408 (410)
T ss_dssp EEECCC-CHHHHHHHHHHHHT
T ss_pred EEEEcC-CHHHHHHHHHHHHh
Confidence 999986 99999999999875
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=377.58 Aligned_cols=363 Identities=19% Similarity=0.354 Sum_probs=294.5
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i~ 113 (464)
.++|+|+.+.+.++ ++.+.+++.+.... ......|++..|..++|+++++++++.++ .++++ ++|+
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~----------~~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~~i~ 95 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSG----------DFMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNVL 95 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHS----------CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHEE
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhC----------CCccCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCcEE
Confidence 47899999998874 56677776664221 01246899888999999999999998877 44667 6999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC----------CCCcccCHHHHHHHHHHH
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS----------SNGFRITISALENAYQQA 183 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~d~~~l~~~i~~~ 183 (464)
+|+|+++++..++.+++++||+|+++.|+|.++...+... |.+++.+++++ .++|.+|++.+++.+++
T Consensus 96 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~- 173 (422)
T 3fvs_A 96 VTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMA-GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS- 173 (422)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT-
T ss_pred EECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHc-CCEEEEEecccccccccccccccCCCCCHHHHHhhcCC-
Confidence 9999999999999999999999999999999999888877 99999999875 23678999999988753
Q ss_pred hhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCC
Q 037587 184 QTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS 263 (464)
Q Consensus 184 ~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (464)
++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+.. ..+
T Consensus 174 -----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~---------~~~ 237 (422)
T 3fvs_A 174 -----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISIASLPG---------MWE 237 (422)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTT---------TGG
T ss_pred -----CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCChhhccc---------ccC
Confidence 789999999999999999999999999999999999999999998877654 3445554422 337
Q ss_pred cEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCC-----chhhHHHHHHHHHHHHH
Q 037587 264 RIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSD-----KKFTCNYMKENRKRLRK 336 (464)
Q Consensus 264 ~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~ 336 (464)
++++++||||.||++|+|+||++++++ +.+.+.... ..++++++.|.++..++.+ ..+ .+++++.++.+++
T Consensus 238 ~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 315 (422)
T 3fvs_A 238 RTLTIGSAGKTFSATGWKVGWVLGPDH-IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP-SSYFVQFPQAMQR 315 (422)
T ss_dssp GEEEEEEHHHHHTCGGGCCEEEECCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT-TCHHHHHHHHHHH
T ss_pred cEEEEecchhccCCccceEEEEEeCHH-HHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch-HHHHHHHHHHHHH
Confidence 899999999999999999999999554 444444432 2445788999998888864 112 4567888999999
Q ss_pred HHHHHHHHHHhCCCeeecCCccEEEEEecCccccc-C------ChhHHHHHHHHHHHhcCeEEeCCCCCCC-----CCCC
Q 037587 337 RKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS-N------TFEAEKELWKKIIFEVGLNISPGSSCHC-----NEPG 404 (464)
Q Consensus 337 ~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~-~------~~~~~~~l~~~ll~~~gI~v~pg~~f~~-----~~~~ 404 (464)
+++.+.+.|+++|+.+..+++|+|+|++++..... . ......+++..+++++||.+.||+.|+. ...+
T Consensus 316 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~ 395 (422)
T 3fvs_A 316 CRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDH 395 (422)
T ss_dssp HHHHHHHHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCS
T ss_pred HHHHHHHHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCC
Confidence 99999999999999988899999999998752110 0 0001336788888888999999998863 3478
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 405 WFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 405 ~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
++||+++. +++++++++++|++++++
T Consensus 396 ~iRis~~~-~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 396 YIRFCFVK-DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp EEEEECCC-CHHHHHHHHHHHHHHHHC
T ss_pred eEEEEecC-CHHHHHHHHHHHHHHHhh
Confidence 99999996 999999999999998864
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=373.67 Aligned_cols=360 Identities=18% Similarity=0.340 Sum_probs=292.4
Q ss_pred CCceEEeeccccc-----ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 35 PSGIIQMGLAENQ-----LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 35 ~~~~i~l~~~~n~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
..++|+|+.+.+. .+++.+.+++.+.... .....|++..|..++|+++++++++. + .++++
T Consensus 53 ~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~-~--~~~~~ 118 (427)
T 3dyd_A 53 NKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDS-----------GKYNGYAPSIGFLSSREEIASYYHCP-E--APLEA 118 (427)
T ss_dssp TSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHH-----------CCSSSCCCTTCCHHHHHHHHHHHCBT-T--BCCCG
T ss_pred CCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhc-----------CcCCCCCCCCCcHHHHHHHHHHHhhc-C--CCCCh
Confidence 3468999998743 3457777777664221 23457988889999999999999753 2 44678
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
++|++|+|+++++..++.+++++||+|+++.|+|..+...+... |++++.++++++++|.+|++.+++.+++ +
T Consensus 119 ~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~ 191 (427)
T 3dyd_A 119 KDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESM-GIEVKLYNLLPEKSWEIDLKQLEYLIDE------K 191 (427)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHSSCCT------T
T ss_pred HHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHhcc------C
Confidence 99999999999999999999999999999999999998888877 9999999987667888999999988754 7
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+. ...++++++
T Consensus 192 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~~~----------~~~~vi~~~ 259 (427)
T 3dyd_A 192 TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLATLS----------TDVPILSCG 259 (427)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGGGC----------SSCCEEEEE
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHHhC----------CCCcEEEEe
Confidence 88999999999999999999999999999999999999999999877655 444544442 225689999
Q ss_pred CCCcCCCCCccEEEEEEecC------HHHHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNN------ERVVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLV 342 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~------~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (464)
||||.||++|+|+||+++++ +.+.+.+.... ..++.+++.|.++..+|++.. .+++++.++.++++++.+.
T Consensus 260 S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~--~~~~~~~~~~~~~~~~~l~ 337 (427)
T 3dyd_A 260 GLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCY 337 (427)
T ss_dssp ESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHH
T ss_pred eccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 34555444432 345688899999999988422 4457788888999999999
Q ss_pred HHHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHH
Q 037587 343 SGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVA 421 (464)
Q Consensus 343 ~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 421 (464)
+.|+++ |+.+..+++|+|+|+.++...... .....+++..+++++||.+.||..|+. ++++||+++ .++++++++
T Consensus 338 ~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~-~~~e~i~~~ 413 (427)
T 3dyd_A 338 GALAAIPGLRPVRPSGAMYLMVGIEMEHFPE-FENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEA 413 (427)
T ss_dssp HHHHHSTTEEEECCSBTTEEEEEECGGGCTT-CSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESC-SCHHHHHHH
T ss_pred HHHhcCCCceecCCCeeEEEEEecCHhhcCC-CCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEEC-CCHHHHHHH
Confidence 999998 888888899999999887321111 112345788888788999999998863 689999998 599999999
Q ss_pred HHHHHHHHHhhC
Q 037587 422 LQRIKVFAQSCN 433 (464)
Q Consensus 422 l~~l~~~l~~~~ 433 (464)
+++|++++++++
T Consensus 414 l~~l~~~l~~~~ 425 (427)
T 3dyd_A 414 CSRIQEFCEQHY 425 (427)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=366.53 Aligned_cols=350 Identities=18% Similarity=0.262 Sum_probs=291.4
Q ss_pred CCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 34 NPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
.+.++|||+.++|+++ ++.+.+++.+... .....|++ .| .++|+++++++++.++ .++++++|
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~-~~-~~lr~~la~~~~~~~~--~~~~~~~i 84 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQ------------REAFGYQP-DG-SLLSQATAEFYADRYG--YQARPEWI 84 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHHHHHH------------TTCCSSCC-SS-CCHHHHHHHHHHHHHC--CCCCGGGE
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHHHHHH------------cCCCCCCC-CC-HHHHHHHHHHHHHHhC--CCCCHHHE
Confidence 4568899999998885 4667777665421 12457888 77 9999999999998877 44678999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||+|+++.|+|.++...+... |++++.++++++ +|++++++.+++ ++++
T Consensus 85 ~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~----~d~~~l~~~l~~------~~~~ 153 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSAT-QREGIFIDATGG----INLHDVEKGFQA------GARS 153 (377)
T ss_dssp EEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHH-TCCEEEEECTTS----CCHHHHHHHHHT------TCCE
T ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEEccCCCC----CCHHHHHHHhcc------CCCE
Confidence 99999999999999999999999999999999998888877 999999998753 899999999875 6789
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC-CCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS-PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+ . ...++..+.. .+++++++||
T Consensus 154 v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~----------~~~~i~~~s~ 221 (377)
T 3fdb_A 154 ILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQH--TVAAGVSDTA----------ASVCITITAP 221 (377)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCC--CCGGGSCHHH----------HHHEEEEECS
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCC--CcccHHHccC----------CCcEEEEEeC
Confidence 9999999999999999999999999999999999999999877765 3 3344433321 2688999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA- 348 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 348 (464)
||.+|++|+|+||+++.++.+.+.+..... .++++++.|.++..++.+. .+++++.++.++++++.+.+.|++.
T Consensus 222 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (377)
T 3fdb_A 222 SKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG---TDFLNQEVAYLKNNHDFLLHEIPKRI 298 (377)
T ss_dssp TTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998867767666655443 2467889999988888753 4567888899999999999999985
Q ss_pred -CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 349 -GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 349 -g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
|+.+.++++++++|++++...... +++..+++++||.++||..|+...++++||+++. +++++++++++|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~ 371 (377)
T 3fdb_A 299 PGAKITPMQATYLMWIDFRDTTIEG------SPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAK 371 (377)
T ss_dssp TTCEECCCSBCSEEEEECTTSCCCS------CHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHH
T ss_pred CCceEecCCeeEEEEEECcccCCCH------HHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHH
Confidence 899999999999999998632112 3677788777999999999986667899999995 89999999999999
Q ss_pred HHHhh
Q 037587 428 FAQSC 432 (464)
Q Consensus 428 ~l~~~ 432 (464)
++++.
T Consensus 372 ~l~~~ 376 (377)
T 3fdb_A 372 AVSHH 376 (377)
T ss_dssp HHTTC
T ss_pred HHhhc
Confidence 98653
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=367.27 Aligned_cols=350 Identities=21% Similarity=0.385 Sum_probs=281.1
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|||+.|.++++ ++.+.+++.+... .....|++..|..++|+++++++++.++ +++++++|+
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~v~ 95 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLE------------TDALGYTVALGLPALRQRIARLYGEWYG--VDLDPGRVV 95 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC----------------------CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999999886 4656666665321 1235788888899999999999998877 457889999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|+++.|+|..+...+... |++++.++++++++|.+|++++++. ++++|
T Consensus 96 ~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v 165 (391)
T 3h14_A 96 ITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRAL-GLVPVDLPTAPENRLQPVPADFAGL---------DLAGL 165 (391)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECCGGGTTSCCHHHHTTS---------CCSEE
T ss_pred EecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHhc---------CCeEE
Confidence 9999999999999999999999999999999999888877 9999999998767788999988764 57889
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. . .+...+ .+++++++||||
T Consensus 166 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~-~~~~~~------------~~~~i~~~s~sK 230 (391)
T 3h14_A 166 MVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK--A-VTALEL------------TDECYVINSFSK 230 (391)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC--C-CCGGGT------------CSSSEEEEESSS
T ss_pred EECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC--C-cChhhc------------CCCEEEEEechh
Confidence 9999999999999999999999999999999999999998777654 1 232222 268899999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.+|++|+|+||++++++ +.+.+..... .++++.+.|.++.+++.. .+++++.++.++++++.+.+.|+++++.
T Consensus 231 ~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 305 (391)
T 3h14_A 231 YFSMTGWRVGWMVVPED-QVRVVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAGFT 305 (391)
T ss_dssp TTCCTTSCCEEEECCGG-GHHHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCccceeEEEEeCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999655 4444444332 235778899998888874 4568888899999999999999988765
Q ss_pred e-ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 352 C-LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 352 ~-~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
. .++++++|+|++++... ....+++..+++++||.++||..|+. ..++++||+++. +++++++++++|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~~ 379 (391)
T 3h14_A 306 RIAPPDGAFYVYADVSDLT-----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEAFM 379 (391)
T ss_dssp CBCCCCBTTEEEEECTTTC-----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred cccCCCeeEEEEEecCccC-----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHH
Confidence 4 57888899999997521 11235778888777999999999986 456799999996 8899999999999999
Q ss_pred HhhCc
Q 037587 430 QSCNP 434 (464)
Q Consensus 430 ~~~~~ 434 (464)
++...
T Consensus 380 ~~~~~ 384 (391)
T 3h14_A 380 QARGE 384 (391)
T ss_dssp HHC--
T ss_pred HHhcc
Confidence 98875
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=371.69 Aligned_cols=364 Identities=21% Similarity=0.299 Sum_probs=290.4
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
.++|+|+.+.+.++ ++.+.+++.+.... . ......|++..|..++|+++++++.+.+| .+++++ +|+
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~ 105 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANS-----P----DPLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVL 105 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTC-----S----CGGGGSCCCSSCCHHHHHHHHHHHHHHHT--SCCCTTTSEE
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhc-----c----ccCccCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcCCEE
Confidence 46799999988764 46666666654211 0 01346788878899999999999988766 346788 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCC--------CcccCHHHHHHHHHHHhh
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSN--------GFRITISALENAYQQAQT 185 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~l~~~i~~~~~ 185 (464)
+|+|+++++..++.+++++||.|+++.|+|+++...+... |.+++.+++++++ +|.+|++.|++.+++
T Consensus 106 ~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 181 (429)
T 1yiz_A 106 VTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA-GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE--- 181 (429)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT---
T ss_pred EecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCcccccccccccCcccCHHHHHHHhcc---
Confidence 9999999999999999999999999999999999888876 9999999987643 678999999988753
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+.. ..+++
T Consensus 182 ---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~---------~~~~~ 247 (429)
T 1yiz_A 182 ---KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTLPG---------MWERT 247 (429)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS--CCCCGGGSTT---------TGGGE
T ss_pred ---CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCcChhhccC---------CcCce
Confidence 789999999999999999999999999999999999999999998877654 3344433311 23689
Q ss_pred EEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCC-----chhhHHHHHHHHHHHHHHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSD-----KKFTCNYMKENRKRLRKRK 338 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~ 338 (464)
+++.||||.||++|+|+||++++ +.+.+.+.... ..++.+++.|.++..+|++ ..+ .+++++.++.+++++
T Consensus 248 ~~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 325 (429)
T 1yiz_A 248 ITIGSAGKTFSLTGWKIGWAYGP-EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKR 325 (429)
T ss_dssp EEEEEHHHHHTCGGGCCEEEESC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHH
T ss_pred EEEecchhccCCCCcceEEEEeC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHH
Confidence 99999999999999999999995 44555554432 2345788999998888876 332 456888889999999
Q ss_pred HHHHHHHHhCCCeeecCCccEEEEEecCcccc------cCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCeEE
Q 037587 339 EMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV------SNTFEAEKELWKKIIFEVGLNISPGSSCHCN-----EPGWFR 407 (464)
Q Consensus 339 ~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~------~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~R 407 (464)
+.+.+.|.++|+.+.++++|+|+|++++.... ........+++..+++++||.+.||..|+.. .++++|
T Consensus 326 ~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iR 405 (429)
T 1yiz_A 326 DYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVR 405 (429)
T ss_dssp HHHHHHHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEE
T ss_pred HHHHHHHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEE
Confidence 99999999889998888889999999975310 0000123457777877789999999888642 267999
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHh
Q 037587 408 ICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 408 is~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
|+++. +++++++++++|++++++
T Consensus 406 is~~~-~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 406 YCFFK-KDENLQKAAEILRKWKGS 428 (429)
T ss_dssp EECCS-CHHHHHHHHHHHHHHSCC
T ss_pred EEecC-CHHHHHHHHHHHHHhccC
Confidence 99995 899999999999988643
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-45 Score=373.21 Aligned_cols=350 Identities=19% Similarity=0.296 Sum_probs=273.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC----eEEEcCCCCCChhhhccc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGD----AFLLPTPYYPGFDRDLKW 152 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~ 152 (464)
...|++..|.+++|++|++++++.++ ++++++++|++|+|+++++..++.+++++|| .|+++.|+|+.|...+..
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~g-G~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~ 200 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDG-GVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISE 200 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTT-TCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcC-CCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHH
Confidence 46799999999999999999988763 2557899999999999999999999999875 999999999999988887
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. |++++.++++++++|.+|+++|++.+++... +.++++|+++|||||||.++|.+++++|+++|++++++||+||+|.
T Consensus 201 ~-g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~ 278 (498)
T 3ihj_A 201 L-DAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ 278 (498)
T ss_dssp T-TCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred c-CCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc
Confidence 7 9999999999877899999999999986421 1258999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEe--cCHHHHHHHHHhc-ccCCCChH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYS--NNERVVSAATKMS-SFGLVSSQ 308 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~--~~~~~~~~~~~~~-~~~~~s~~ 308 (464)
++.|++. ..+.++..+..++... .+...++++++||||+| |++|+|+||++. .++.+.+.+.+.. .....+.+
T Consensus 279 ~~~~~~~-~~~~s~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 355 (498)
T 3ihj_A 279 DNVYSPD-CRFHSFKKVLYEMGPE--YSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVS 355 (498)
T ss_dssp TCBCCTT-CCCCCHHHHHHHTCHH--HHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHH
T ss_pred ccccCCC-CCcCCHHHHHHHhccc--ccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHH
Confidence 9888642 1345666654422000 00123589999999999 899999999983 3556666554443 33456789
Q ss_pred HHHHHHHHcCCc-----hh--hHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccc------cCCh
Q 037587 309 TQYLLSRMLSDK-----KF--TCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLV------SNTF 374 (464)
Q Consensus 309 ~q~~~~~~l~~~-----~~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~------~~~~ 374 (464)
.|.++..+++++ .+ ..++.++.++.++++++.+.+.|.++ |+++.++++|+|+|+++..... ....
T Consensus 356 ~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~ 435 (498)
T 3ihj_A 356 GQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQM 435 (498)
T ss_dssp HHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCC
Confidence 999999999752 22 12334567788999999999999998 9999999999999987642110 0011
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..+..++.++++++||.++||+.|+. .+.++||++++ .+++++++++++|++++++.+
T Consensus 436 ~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 436 APDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL-PPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp CHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHHH
Confidence 22223367788889999999999985 45679999997 689999999999999987654
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=364.13 Aligned_cols=359 Identities=18% Similarity=0.243 Sum_probs=294.4
Q ss_pred CCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 34 NPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
...++|||+.+.+.++ ++.+.+++.+... .....|++. ..++++++++++.+.++ .++++++|
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~i 88 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASMEEKLK------------VAAFGYESV--PAEYYKAVADWEEIEHR--ARPKEDWC 88 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHHHHHT------------TCCCCCBCC--CHHHHHHHHHHHHHHHS--CCCCGGGE
T ss_pred cCCCceeccccCCCCCCCHHHHHHHHHHHh------------cCcCCCCCC--CHHHHHHHHHHHHHHhC--CCCCHHHE
Confidence 4458999999988775 4667777666421 124567665 59999999999998876 44678999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC-CCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
++|+|+++++..++.+++++||+|+++.|+|.++...+... |.+++.++++ .++.|.+|++++++++++ ++++
T Consensus 89 ~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~ 162 (391)
T 3dzz_A 89 VFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGN-GRRVISSDLIYENSKYSVNWADLEEKLAT-----PSVR 162 (391)
T ss_dssp EEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHT-TCEEEECCCEEETTEEECCHHHHHHHHTS-----TTEE
T ss_pred EECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHc-CCEEEEeeeeecCCceeecHHHHHHHHhc-----cCce
Confidence 99999999999999999999999999999999998888877 9999999986 356688999999999862 3789
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+..+ ..++++++.|+
T Consensus 163 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~--------~~d~~i~~~s~ 232 (391)
T 3dzz_A 163 MMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWD--------AKNWVVSLISP 232 (391)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTT--------TGGGEEEEECS
T ss_pred EEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCcc--------ccCcEEEEEeC
Confidence 999999999999999999999999999999999999999998777654 34454444221 13689999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHh---cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKM---SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
||.+|++|+|+||++++++.+.+.+... ...++.+++.+.++..++... .+++++.++.++++++.+.+.|++.
T Consensus 233 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~ 309 (391)
T 3dzz_A 233 SKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG---HDWLRELKQVLRDNFAYAREFLAKE 309 (391)
T ss_dssp HHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999756666655544 234457888888888877653 4567888889999999999999984
Q ss_pred --CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 037587 349 --GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426 (464)
Q Consensus 349 --g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 426 (464)
|+.+.++.+++++|++++.... ...+++..|++++||.++||..|+...++++||+++ .+++++++++++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~ 383 (391)
T 3dzz_A 310 VPEVKVLDSNASYLAWVDISALGM-----NAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPKELVIDGMQRLK 383 (391)
T ss_dssp CTTSEECCCCBSSEEEEECGGGCS-----CHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC-SCHHHHHHHHHHHH
T ss_pred CCCcEEeccCceEEEEEehhhcCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHH
Confidence 8999999999999999975211 123577777667899999999998766789999999 48999999999999
Q ss_pred HHHHhhC
Q 037587 427 VFAQSCN 433 (464)
Q Consensus 427 ~~l~~~~ 433 (464)
+++++.+
T Consensus 384 ~~l~~~~ 390 (391)
T 3dzz_A 384 QGVLNLN 390 (391)
T ss_dssp HHHHTCC
T ss_pred HHHHHhh
Confidence 9998764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=362.91 Aligned_cols=345 Identities=17% Similarity=0.246 Sum_probs=279.6
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
++|||+.|+|+++ ++.+.+++.+. ......|++..|..++|+++++++.+.++ +++++++|++|
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~~t 88 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNH-------------THSLNIYPKSAFEESLRAAQRGFFKRRFK--IELKENELIST 88 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTT-------------GGGGGSCCCTTCCHHHHHHHHHHHHHHHS--CCCCGGGEEEE
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHh-------------hhhcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEEEC
Confidence 8899999999885 46777777664 23456899888999999999999988776 34578999999
Q ss_pred CChHHHHHHHHHHhcCC--CCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 116 AGSTAANETLMFCLADP--GDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~--gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+++++..++.+++++ ||+|+++.|+|..+...+... |.+++.+++++++++.+ ++++.+.+ ++++|
T Consensus 89 ~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~---~l~~~~~~------~~~~v 158 (376)
T 3ezs_A 89 LGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFI-KAKSLLMPLTKENDFTP---SLNEKELQ------EVDLV 158 (376)
T ss_dssp SSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTSCC---CCCHHHHH------HCSEE
T ss_pred cCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHc-CCEEEEcccCCCCCcch---hHHhhhcc------CCCEE
Confidence 99999999999999999 999999999999998888877 99999999876545444 55566654 68899
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. ..++......++ .+..+++++++||||
T Consensus 159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~i~~~s~sK 231 (376)
T 3ezs_A 159 ILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAG----NEAFKNVLVIHSLSK 231 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTT----CTTCTTEEEEEESTT
T ss_pred EEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHcccccc----ccccCcEEEEecchh
Confidence 9999999999999999999999999999999999999998776553 234433322000 002378999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.+|++|+|+||+++ ++.+.+.+..... .++++++.|.++..++++.++ +++.++.++++++.+.+.|+ ++.
T Consensus 232 ~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~l~--~~~ 304 (376)
T 3ezs_A 232 RSSAPGLRSGFIAG-DSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRH----AEFFRNIYANNLKLARKIFK--NTL 304 (376)
T ss_dssp TTTCGGGCCEEEEE-CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHH----HHHHHHHHHHHHHHHHHHST--TCC
T ss_pred ccCCccceeEEEee-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHHhc--CCC
Confidence 99999999999998 4555555554433 345788999999999987543 77888889999999999988 655
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC--CCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH--CNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~--~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
.+.+|+|+|++++. ..+++..+++++||.+.||..|+ ...++++||+++. +++++++++++|++++
T Consensus 305 --~~~~~~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 305 --IYPYSFYVYLPVQN---------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEKPLEIIETYR 372 (376)
T ss_dssp --CCSBSSEEEEECSC---------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred --CCCcceEEEEECCC---------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 56788999999971 23577777765899999999987 3457899999985 9999999999999988
Q ss_pred Hhh
Q 037587 430 QSC 432 (464)
Q Consensus 430 ~~~ 432 (464)
+++
T Consensus 373 ~~~ 375 (376)
T 3ezs_A 373 ENH 375 (376)
T ss_dssp CC-
T ss_pred Hhc
Confidence 653
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-45 Score=359.53 Aligned_cols=332 Identities=17% Similarity=0.200 Sum_probs=277.7
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.|+|+++ ++.+.+++.+. ......|++..+ .++|+++|++++ +++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~v~~ 87 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQN-------------ANKAHLYPDDSM-IELKSTLAQKYK--------VQNENIII 87 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHH-------------GGGTTSCCCTTC-HHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHH-------------HHhhccCCCCCh-HHHHHHHHHHhC--------CCcceEEE
Confidence 57899999999985 46677776664 234567887766 999999999985 67899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.+++++||+|+++.|+|..+...+... |++++.+++ ..+++ +|++++++.++. ++++|+
T Consensus 88 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~-~~~~~-~d~~~l~~~l~~------~~~~v~ 158 (365)
T 3get_A 88 GAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQC-GAKCYKTQS-ITHNL-DEFKKLYETHKD------EIKLIF 158 (365)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHH-TCEEEECSS-SSCCH-HHHHHHHHHTTT------TEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHc-CCEEEEEec-CCCCC-CCHHHHHHHhCC------CCCEEE
Confidence 999999999999999999999999999999998888877 999999998 23567 999999998863 899999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccccc--CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF--DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
+++||||||.++|.+++++++++| ++|+++|+||+|.++.| .+. ...+...... ..+++++++|||
T Consensus 159 ~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~s~s 226 (365)
T 3get_A 159 LCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIK---------EFDNVLYLGTFS 226 (365)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHH---------HCTTEEEEEESS
T ss_pred EcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhc---------cCCCEEEEeecc
Confidence 999999999999999999999999 57999999999998764 432 2234444433 237899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 352 (464)
|.+|++|+|+||+++ ++.+.+.+......++++.+.|.++..++++. +++++.++.++++++.+.+.|+++|+++
T Consensus 227 K~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 301 (365)
T 3get_A 227 KLYGLGGLRIGYGIA-NANIISAFYKLRAPFNVSNLALKAAVAAMDDD----EFTEKTLENNFSQMELYKEFAKKHNIKI 301 (365)
T ss_dssp STTSCTTTCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hHhcCcchheEEEEc-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999 56666667666666678999999999999975 4578888899999999999999999998
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
.++.++ |+|++++.. ...++...|. ++||.++||..|+ ++++||+++ +++++++++++|++++
T Consensus 302 ~~~~~~-~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~g~~~~---~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 302 IDSYTN-FITYFFDEK-------NSTDLSEKLL-KKGIIIRNLKSYG---LNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CCCSSS-EEEEECSSS-------CHHHHHHHHH-TTTEECEECGGGT---CSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred CCCCCe-EEEEECCCC-------CHHHHHHHHH-HCCEEEEECccCC---CCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 877765 789999753 1234666665 6799999999886 789999998 7999999999999876
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=363.85 Aligned_cols=348 Identities=20% Similarity=0.401 Sum_probs=279.2
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|||+.+.+.++ ++.+.+++.+..... .......|++..|..++|+++++++++.++ +++++++|+
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--------~~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~ 103 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIKELVTDY--------DSVALHGYTSAQGDVETRAAIAEFLNNTHG--THFNADNLY 103 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHHHHHHHS--------CHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHHHHHhcC--------CccccCCcCCCCCcHHHHHHHHHHHHHHhC--CCCChHHEE
Confidence 357899999966653 466777766642210 001156798888999999999999998877 446889999
Q ss_pred EeCChHHHHHHHHHHhcCCC-CeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPG-DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++..++.+++++| |+|+++.|+|.++...+... |++++.+++++ ++|.+|+++|++.+++ ++++
T Consensus 104 ~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~ 175 (398)
T 3ele_A 104 MTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAA-GARLVEVPADT-EHFQIDFDALEERINA------HTRG 175 (398)
T ss_dssp EESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCT-TTSSCCHHHHHHTCCT------TEEE
T ss_pred EccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCC-cCCcCCHHHHHHHhCc------CCCE
Confidence 99999999999999999999 99999999999999888877 99999999875 3688999999998754 7899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhh------CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKS------KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~------~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
|++++||||||.++|.+++++|+++|++ +|+++|+||+|.++.+++. ....... ..++++
T Consensus 176 v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~------------~~~~~i 241 (398)
T 3ele_A 176 VIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI--KVPFVTK------------YYDNTL 241 (398)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTC--CCCCGGG------------TCSSEE
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCC--CcCChHh------------hcCCeE
Confidence 9999999999999999999999999999 9999999999999777653 2222211 236899
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHH-----HHHHHHHh---cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNER-----VVSAATKM---SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRK 338 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~-----~~~~~~~~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 338 (464)
+++||||+||++|+|+||++++++. +...+... ....+.+.+.|.++..++++... ++.+++++
T Consensus 242 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--------~~~~~~~~ 313 (398)
T 3ele_A 242 VCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGD--------INAYKENR 313 (398)
T ss_dssp EEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCC--------HHHHHHHH
T ss_pred EEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHH--------HHHHHHHH
Confidence 9999999999999999999997652 22222221 22345677889888888876542 45566778
Q ss_pred HHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHH
Q 037587 339 EMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETL 418 (464)
Q Consensus 339 ~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l 418 (464)
+++.+.|+++|+.+.++++|+|+|++++.. ...+++..+ .++||.++||..|+. ++++||+++ .+++++
T Consensus 314 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l-~~~gi~v~~g~~~~~--~~~iRis~~-~~~e~i 382 (398)
T 3ele_A 314 DLLYEGLTRIGYHCFKPDGAFYMFVKALED-------DSNAFCEKA-KEEDVLIVAADGFGC--PGWVRISYC-VDREMI 382 (398)
T ss_dssp HHHHHHHHHHTCCEECCSBSSEEEEECSSS-------CHHHHHHHH-HTTTEECEESGGGTC--TTEEEEECC-SCHHHH
T ss_pred HHHHHHHHHcCCeecCCCeeEEEEEEcCCC-------CHHHHHHHH-HHCCEEEeCccccCC--CCeEEEEec-CCHHHH
Confidence 888888888899999999999999998742 122455554 678999999998864 679999998 599999
Q ss_pred HHHHHHHHHHHHhhC
Q 037587 419 QVALQRIKVFAQSCN 433 (464)
Q Consensus 419 ~~~l~~l~~~l~~~~ 433 (464)
++++++|++++++.+
T Consensus 383 ~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 383 KHSMPAFEKIYKKYN 397 (398)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=363.81 Aligned_cols=350 Identities=20% Similarity=0.306 Sum_probs=283.2
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
.++|+|+.+.+.++ ++.+.+++.+... .....|++..|..++|+++++++.+.+| .+++++ +|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~ 95 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHVA------------QGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDIT 95 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHH------------hhccCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 36799999988764 4667776665421 1145788877899999999999988766 346788 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|+++.|+|+.+...++.. |++++.++++++ +|.+|+++|++.+.. ++++|
T Consensus 96 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v 167 (386)
T 1u08_A 96 VTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALS-GGIVKRMALQPP-HFRVDWQEFAALLSE------RTRLV 167 (386)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCTT-TCCCCHHHHHHHCCT------TEEEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeecCcc-cCcCCHHHHHHhhcc------cCEEE
Confidence 9999999999999999999999999999999999888877 999999998753 578999999988743 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.|++. .+.++..+.. ..++++++.||||
T Consensus 168 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~---------~~~~~i~~~s~sK 236 (386)
T 1u08_A 168 ILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ--GHASVLAHPQ---------LRERAVAVSSFGK 236 (386)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS--CCCCGGGSHH---------HHTTEEEEEEHHH
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCC--CCcChhcccC---------ccCcEEEEecchh
Confidence 9999999999999999999999999999999999999998777554 2334433321 1268999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.+|++|+|+||++++ +.+.+.+.... ..++++++.|.++..+++.. .+++++.++.++++++.+.+.|++.|++
T Consensus 237 ~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 312 (386)
T 1u08_A 237 TYHMTGWKVGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLE 312 (386)
T ss_dssp HTTCGGGCCEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCE
T ss_pred hcCCcccceEEEEcC-HHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 999999999999995 44555554433 23457888898888888753 3457888899999999999999988999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC--NEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
+.++++|+|+|++++.... .+..+++..+++++||.++||..|+. ..++++||+++. +++++++++++|++
T Consensus 313 ~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 313 ILPCEGTYFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 385 (386)
T ss_dssp ECCCCBSSEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred ecCCCceEEEEEecCCCCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence 8888889999999975310 11235777777778999999988864 246799999985 89999999999864
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-45 Score=365.13 Aligned_cols=358 Identities=17% Similarity=0.200 Sum_probs=288.4
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.+.++++ ++.+.+++.+... .....|++. ..++|+++++++++.+| +++++++|+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~ 93 (399)
T 1c7n_A 30 GNEVVPLSVADMEFKNPPELIEGLKKYLD------------ETVLGYTGP--TEEYKKTVKKWMKDRHQ--WDIQTDWII 93 (399)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHH------------HCCCSSBCC--CHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCceeeeecCCCCCCCHHHHHHHHHHHh------------cCCCCCCCC--cHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 357899999988764 5667777666421 123568764 79999999999987766 346788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC-CCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++..++.+++++||+|+++.|+|+++...+... |++++.++++ +++.|.+|+++|++.+++ .++++
T Consensus 94 ~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~ 167 (399)
T 1c7n_A 94 NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ-ERKIIECELLEKDGYYTIDFQKLEKLSKD-----KNNKA 167 (399)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTT-TCEEEECCCEEETTEEECCHHHHHHHHTC-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEecccccCCCCEEEcHHHHHHHhcc-----CCCcE
Confidence 9999999999999999999999999999999998888776 9999999885 334578999999998862 27899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+..+ ..++++++.|||
T Consensus 168 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~--------~~~~~i~~~s~s 237 (399)
T 1c7n_A 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQ--------LADKTITFTAPS 237 (399)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHH--------HHTTEEEEECSH
T ss_pred EEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHHcCcc--------ccCcEEEEEeCh
Confidence 99999999999999999999999999999999999999998776554 33444433211 026889999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhccc---CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh-C
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV-A 348 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~ 348 (464)
|.+|++|+|+||++++++.+.+.+...... .+++++.|.++.++++.. .+++++.++.++++++.+.+.|++ +
T Consensus 238 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 314 (399)
T 1c7n_A 238 KTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDKNQRIVKDFFEVNH 314 (399)
T ss_dssp HHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999766565555544332 256888999888888643 356788888999999999999998 5
Q ss_pred -CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 349 -GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 349 -g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
|+.+.++.+++++|++++... ....+++..|++++||.+.||..|+...++++||+++. +++++++++++|++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~ 388 (399)
T 1c7n_A 315 PEIKAPLIEGTYLQWIDFRALK-----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNK 388 (399)
T ss_dssp TTSBCCCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHH
T ss_pred CCCeEecCCceEEEEEEcccCC-----CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHH
Confidence 888888899999999997420 01235777776678999999998875557899999996 68999999999999
Q ss_pred HHHhhC
Q 037587 428 FAQSCN 433 (464)
Q Consensus 428 ~l~~~~ 433 (464)
++++.+
T Consensus 389 ~l~~~~ 394 (399)
T 1c7n_A 389 ALKDLK 394 (399)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=364.37 Aligned_cols=348 Identities=18% Similarity=0.266 Sum_probs=281.6
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i 112 (464)
..++|||+.+.++++ ++.+.+++.+.... .....|++..|..++|+++|+++.+.+| ++++++ +|
T Consensus 24 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~l~~~ia~~~~~~~g--~~~~~~~~v 90 (376)
T 2dou_A 24 GVGLIDLSIGSTDLPPPEAPLKALAEALND-----------PTTYGYCLKSCTLPFLEEAARWYEGRYG--VGLDPRREA 90 (376)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHTTC-----------GGGSSCCCHHHHHHHHHHHHHHHHHHHS--CCCCTTTSE
T ss_pred CCCEEeccCCCCCCCCCHHHHHHHHHHHhC-----------CCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCccE
Confidence 346799999998874 46677766654210 1245787766789999999999987766 334566 99
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||+|+++.|+|+++...+... |++++.+++ +++|.+|++.+++.+.. ++++
T Consensus 91 ~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~--~~~~~~d~~~l~~~l~~------~~~~ 161 (376)
T 2dou_A 91 LALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVA-SLRTFLIPL--REDGLADLKAVPEGVWR------EAKV 161 (376)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHT-TCEEEEECB--CTTSSBCGGGSCHHHHH------HEEE
T ss_pred EEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHc-CCEEEEeeC--CCCCCCCHHHHHHhhcc------CceE
Confidence 99999999999999999999999999999999998888877 999999998 35778899999998865 7899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ..++..+.. ..+++++++|||
T Consensus 162 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~---------~~~~~i~~~s~s 229 (376)
T 2dou_A 162 LLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE---APSPLALPG---------AKERVVELFSLS 229 (376)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC---CCCGGGSTT---------GGGTEEEEEEHH
T ss_pred EEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCC---------CCCcEEEEecch
Confidence 99999999999999999999999999999999999999998766543 123333322 236889999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.||++|+|+||++++ +.+.+.+...... .+++++.|.++..++++. .+++++.++.++++++.+.+.|+++ +
T Consensus 230 K~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~ 304 (376)
T 2dou_A 230 KSYNLAGFRLGFALGS-EEALARLERVKGVIDFNQYAGVLRMGVEALKTP---KEVVRGYARVYRERALGMAEALKGV-L 304 (376)
T ss_dssp HHHTCGGGCCEEEEEC-HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHTTT-S
T ss_pred hhcCChhheeEEEecC-HHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 9999999999999985 4555555443322 346889999999999873 4567888899999999999999988 8
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
.+.++.+|+|+|++++.... ..+++..++++ ||.++||..|+...++++||+++. +++++++++++|++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 305 SLLPPRATMYLWGRLPEGVD------DLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp EECCCCBSSEEEEECCTTCC------HHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred CccCCCeeEEEEEECCCCCC------HHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 88888889999999974221 23577777655 999999998875457899999985 8999999999998764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-45 Score=362.08 Aligned_cols=355 Identities=18% Similarity=0.365 Sum_probs=286.4
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.+.++++ ++.+.+++.+... .....|++..|..++|+++++++++.++ +++++++|+
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~ 94 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALE------------QGKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNIL 94 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 356799999998764 4666666655321 1235698888899999999999998776 345788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|++++|+|+++...++.. |++++.++.+++++|.+|++.|++.+++ ++++|
T Consensus 95 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 167 (388)
T 1j32_A 95 VTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA-EGTPVILPTTVETQFKVSPEQIRQAITP------KTKLL 167 (388)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCEEEEecCCcccCCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999998888776 9999999987555688999999998754 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+..+ ..++++++.|+||
T Consensus 168 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~s~sK 237 (388)
T 1j32_A 168 VFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA--QHLSIGAASPE--------AYERSVVCSGFAK 237 (388)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHH--------HHHTEEEEEESTT
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC--CCCCHHHcccc--------ccCCEEEEeechh
Confidence 9999999999999999999999999999999999999998777554 33444444221 0257899999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI 350 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 350 (464)
.+|++|+|+||+++++ .+.+.+..... .+.++++.|.++..+++.. .+++++.++.++++++++.+.|+++ |+
T Consensus 238 ~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 313 (388)
T 1j32_A 238 TYAMTGWRVGFLAGPV-PLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGL 313 (388)
T ss_dssp TTTCTTTCCEEEECCH-HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred ccCCcccceEEEEeCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 9999999999999954 45554544332 2457788898888888643 3457788888999999999999988 88
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
++.++.+|+|+|++++.. . .+..+++..+++++||.+.||..|+. ++++||+++ .+++++++++++|+++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~i~~~~~~l~~~l~ 385 (388)
T 1j32_A 314 ECPKPDGAFYMFPSIAKT-G----RSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYA-TDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp BCCCCCBTTEECCBCGGG-T----CCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECC-SCHHHHHHHHHHHHHHHH
T ss_pred cccCCCeeEEEEEecCCC-C----CCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 888888999999988642 0 11235777777667999999988864 678999998 589999999999999987
Q ss_pred hh
Q 037587 431 SC 432 (464)
Q Consensus 431 ~~ 432 (464)
+.
T Consensus 386 ~~ 387 (388)
T 1j32_A 386 GI 387 (388)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=372.37 Aligned_cols=358 Identities=16% Similarity=0.203 Sum_probs=283.2
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+.+.+.++ ++.+.+++.+..... ........|++..|..+||+++++++. ++ +++++++|+
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~-------~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g--~~~~~~~i~ 136 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGL-------ATREGYSGYGAEQGQGALREAVASTFY--GH--AGRAADEIF 136 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHGG-------GGSCCCCCSTTTTCCHHHHHHHHHHHH--TT--TTCCGGGEE
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhh-------ccccCCCCCCCCCCcHHHHHHHHHHHH--cC--CCCCHHHEE
Confidence 457899999988875 466666666542210 000234578888899999999999997 33 457889999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcE----------EEEEecCCCCCcccCHHHHHHHHHHH
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVE----------IVPIHCSSSNGFRITISALENAYQQA 183 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~----------~~~v~~~~~~~~~~d~~~l~~~i~~~ 183 (464)
+|+|+++++..+ .+++++||.|++++|+|.++...+... |.+ ++.++++.++++..+++.+
T Consensus 137 ~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 207 (449)
T 3qgu_A 137 ISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMM-GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------- 207 (449)
T ss_dssp EESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHH-TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred EccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHc-CCcccccccccceeEEEecccccCCcCChhHc-------
Confidence 999999999999 888899999999999999999888876 888 9999988666676665432
Q ss_pred hhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCC
Q 037587 184 QTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS 263 (464)
Q Consensus 184 ~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (464)
+++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ...++..+.. ..+
T Consensus 208 ----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~---------~~~ 272 (449)
T 3qgu_A 208 ----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPG---------ADE 272 (449)
T ss_dssp ----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTT---------GGG
T ss_pred ----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccC---------CCC
Confidence 3788999999999999999999999999999999999999999998777654 3344444321 236
Q ss_pred cEEEEcCCCcCCCCCccEEEEEEecCHHHH-------HHHHHh--cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHH
Q 037587 264 RIHIVYSLSKDFSMPGFRVGMIYSNNERVV-------SAATKM--SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRL 334 (464)
Q Consensus 264 ~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~-------~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 334 (464)
+++++.||||+||++|+|+||++++++.+. ..+... ..+++.+++.|.++..++.+.. .+++++.++.+
T Consensus 273 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~ 350 (449)
T 3qgu_A 273 VAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMIKFY 350 (449)
T ss_dssp TEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH--HHHHHHHHHHH
T ss_pred cEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC--HHHHHHHHHHH
Confidence 889999999999999999999999665432 122222 2344678899999999998633 35688889999
Q ss_pred HHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCC
Q 037587 335 RKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANIT 414 (464)
Q Consensus 335 ~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~ 414 (464)
+++++++.+.|++.|+.+.++++++|+|++++ ... ..+++..+++++||.++||..|+..+++++||++.. +
T Consensus 351 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~ 422 (449)
T 3qgu_A 351 KENAQILKTTFTEMGFSVYGGDDAPYIWVGFP-GKP------SWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-S 422 (449)
T ss_dssp HHHHHHHHHHHHHTTCCEEESSSSSEEEEECT-TSC------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-C
T ss_pred HHHHHHHHHHHHHCCCeeeCCCCeeEEEEECC-CCC------HHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-C
Confidence 99999999999999999998888899999997 211 235778888778999999999987678999999875 8
Q ss_pred HHHHHHHHHHHHHHHHhhCcccc
Q 037587 415 EETLQVALQRIKVFAQSCNPQML 437 (464)
Q Consensus 415 ~e~l~~~l~~l~~~l~~~~~~~~ 437 (464)
++++++++++|++++++.+.|-+
T Consensus 423 ~e~i~~~l~~l~~~~~~~~~~~~ 445 (449)
T 3qgu_A 423 RENILEAVRRFKEAYGKRNASHH 445 (449)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999987776543
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=358.82 Aligned_cols=346 Identities=24% Similarity=0.417 Sum_probs=281.3
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.+.++++ ++.+.+++.+... .....|++..|..++|+++|+++++.+| +++++++|+
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~v~ 105 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQ------------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVV 105 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEE
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 346799999998765 4566666655321 1124688777899999999999987766 345788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|+++...+... |++++.++.+++++|.+|+++|++.+++ ++++|
T Consensus 106 ~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 178 (389)
T 1o4s_A 106 VTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA-GGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAV 178 (389)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEE
T ss_pred EecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhccc------CceEE
Confidence 9999999999999999999999999999999999888876 9999999987545688999999988754 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. ..++..+.. ..+++++++||||
T Consensus 179 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~---~~~~~~~~~---------~~~~~i~~~s~sK 246 (389)
T 1o4s_A 179 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE---FTSILDVSE---------GFDRIVYINGFSK 246 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC---CCCHHHHCS---------SSTTEEEEEESTT
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCCHhhcCC---------CCCcEEEEeechh
Confidence 9999999999999999999999999999999999999998766432 234444411 2378999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.+|++|+|+||++++ +.+.+.+..... .++++++.|.++..++++. +++.++.++++++.+.+.|+++|++
T Consensus 247 ~~~~~G~r~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~g~~ 319 (389)
T 1o4s_A 247 SHSMTGWRVGYLISS-EKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVK 319 (389)
T ss_dssp TTTCGGGCCEEEECC-HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCcccceEEEEeC-HHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 999999999999995 445555544332 2457888999998888864 4556777888889999999988888
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++.+|+|+|++++ .. ..+++..+++++||.+.||..|+. ++++||+++. +++++++++++|++++++
T Consensus 320 ~~~~~~~~~~~~~~~--~~------~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~-~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 320 FVEPEGAFYLFFKVR--GD------DVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLNS 388 (389)
T ss_dssp CCCCSBSSEEEEECS--SC------HHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHHHTC
T ss_pred eecCCcceEEEEeCC--CC------HHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 888888999999986 11 235777777578999999988864 5699999995 899999999999998753
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=361.90 Aligned_cols=366 Identities=19% Similarity=0.339 Sum_probs=284.6
Q ss_pred CCCceEEeecccc----cc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHc----CCC
Q 037587 34 NPSGIIQMGLAEN----QL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIR----GNK 104 (464)
Q Consensus 34 ~~~~~i~l~~~~n----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~----~~~ 104 (464)
++.++|+|+.+.+ .+ +++.+.+++.+.... .....|++..|..++|+++|+++++.+ ..+
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~ 99 (416)
T 1bw0_A 31 SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS-----------QECNGYFPTVGSPEAREAVATWWRNSFVHKEELK 99 (416)
T ss_dssp SCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT-----------TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTG
T ss_pred cCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhC-----------CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCC
Confidence 3467899999864 23 456677766654211 124578887889999999999998421 112
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
+++++++|++|+|+++++..++.+++++||+|+++.|+|+++...+... |++++.++++++++|.+|+++|++.+++
T Consensus 100 ~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~-- 176 (416)
T 1bw0_A 100 STIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY-GIGMHFYNCRPENDWEADLDEIRRLKDD-- 176 (416)
T ss_dssp GGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHHHCCT--
T ss_pred CCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHc-CcEEEEeecCcccCCCCCHHHHHHHhcc--
Confidence 4567899999999999999999999999999999999999998888776 9999999987655688999999988754
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC--CccchhhhhhccCcCCCCCCC
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS--SFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~ 262 (464)
+++++++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.|.+... .+.++..+. ..
T Consensus 177 ----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~----------~~ 242 (416)
T 1bw0_A 177 ----KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE----------TT 242 (416)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC----------CS
T ss_pred ----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc----------CC
Confidence 68899999999999999999999999999999999999999999876654200 122332221 22
Q ss_pred CcEEEEcCCCcCCCCCccEEEEEEecCH-----HHHHHHHHh-cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q 037587 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNE-----RVVSAATKM-SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRK 336 (464)
Q Consensus 263 ~~vi~l~S~SK~~g~~GlRiG~l~~~~~-----~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 336 (464)
+++++++||||.|+++|+|+||++++++ .+....+.. ...++++++.|.++..+++... .+++++.++.+++
T Consensus 243 ~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~ 320 (416)
T 1bw0_A 243 VPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEE 320 (416)
T ss_dssp CCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHH
T ss_pred CcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc--HHHHHHHHHHHHH
Confidence 4689999999999999999999998664 232222222 1345678899999999887532 4457788888899
Q ss_pred HHHHHHHHHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCH
Q 037587 337 RKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITE 415 (464)
Q Consensus 337 ~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~ 415 (464)
+++++.+.|+++ |+.+..+.+|+|+|++++....... ....+++..+++++||.++||..|+. ++++||+++ .++
T Consensus 321 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~-~~~ 396 (416)
T 1bw0_A 321 SAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDI-KTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTT-RPV 396 (416)
T ss_dssp HHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSC-CSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECC-SCH
T ss_pred HHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCC-CCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEec-CCH
Confidence 999999999987 8888878888899998864210000 11235777777788999999998863 679999997 589
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 037587 416 ETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 416 e~l~~~l~~l~~~l~~~~ 433 (464)
+++++++++|.+++++.+
T Consensus 397 e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 397 EVYREAVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998754
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=362.23 Aligned_cols=359 Identities=17% Similarity=0.298 Sum_probs=287.5
Q ss_pred CCceEEeecc-ccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-Cc
Q 037587 35 PSGIIQMGLA-ENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NK 111 (464)
Q Consensus 35 ~~~~i~l~~~-~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~ 111 (464)
+..+|||+.+ .++++ ++.+.+++.+.... .....|++..|..++++++++++.+.++ .++++ ++
T Consensus 38 ~~~~id~~~g~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~l~~~l~~~~g--~~~~~~~~ 104 (407)
T 3nra_A 38 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQS-----------GGVQAYTEYRGDLGIRDLLAPRLAAFTG--APVDARDG 104 (407)
T ss_dssp CSCCEETTSCCTTTSCCCTTHHHHHHHHHHH-----------THHHHSCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTS
T ss_pred CCceeeecCcCCCCCCCcHHHHHHHHHHHhc-----------CCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCc
Confidence 3458999985 44443 46666666654221 1234688888999999999999998877 33445 79
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC----CCCcccCHHHHHHHHHHHhhcC
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS----SNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
|++|+|+++++..++.+++++||+|+++.|+|..+...++.. |++++.++.+. ++++.+|++.|++.+++
T Consensus 105 i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----- 178 (407)
T 3nra_A 105 LIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF-EGEMVPVQLDYVSADETRAGLDLTGLEEAFKA----- 178 (407)
T ss_dssp EEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-----
T ss_pred EEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHc-CCEEEEeecccccccCcCCCcCHHHHHHHHhh-----
Confidence 999999999999999999999999999999999998888877 99999999842 35788999999999875
Q ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
++++|++++||||||.++|.+++++|+++|+++|+++|+||+|..+.+++. .+.++..+.. ...+++++
T Consensus 179 -~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~--~~~~~~~~~~--------~~~~~~i~ 247 (407)
T 3nra_A 179 -GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA--SYTHLRAEAA--------VDAENVVT 247 (407)
T ss_dssp -TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC--CCCCGGGCTT--------SCGGGEEE
T ss_pred -CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCCChhhcCc--------ccCCcEEE
Confidence 788999999999999999999999999999999999999999998877655 3444443320 13478999
Q ss_pred EcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 345 (464)
+.||||.+|++|+|+||++++ +.+.+.+...... .+.+++.|.++..+++.. .+++++.++.++++++.+.+.|
T Consensus 248 ~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L 323 (407)
T 3nra_A 248 IMGPSKTESLSGYRLGVAFGS-RAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDELLHVL 323 (407)
T ss_dssp EECSSSTTCCGGGCCEEEEEC-HHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCC---TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCcccccCCCeeeEEEEEcC-HHHHHHHHHHHhhhccCCChHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999994 4555555443322 235678888888888753 2346677778888999999999
Q ss_pred HhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHH
Q 037587 346 KVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQR 424 (464)
Q Consensus 346 ~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~ 424 (464)
+++ ++.+..+.+++|+|++++... ....+++..|++++||.++||..|+....+++||+++. +++++++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~ 397 (407)
T 3nra_A 324 RGCEGVFARTPQAGSYLFPRLPKLA-----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARR 397 (407)
T ss_dssp HTSTTCBCCCCSBSSEECCBCCCBS-----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHH
T ss_pred hcCCCceeccCCeeEEEEEeCCCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHH
Confidence 988 888888888899999987521 11235777777778999999999987778899999996 99999999999
Q ss_pred HHHHHHhhC
Q 037587 425 IKVFAQSCN 433 (464)
Q Consensus 425 l~~~l~~~~ 433 (464)
|++++++.+
T Consensus 398 l~~~~~~~~ 406 (407)
T 3nra_A 398 IVTLVERYR 406 (407)
T ss_dssp HHHHHHHHB
T ss_pred HHHHHHHhh
Confidence 999998753
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-45 Score=365.09 Aligned_cols=357 Identities=20% Similarity=0.331 Sum_probs=285.1
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~ 113 (464)
.++|+|+.+.+.++ ++.+.+++.+... .....|++..|..++|+++++++++.+| .+++++ +|+
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~ 90 (411)
T 2o0r_A 25 IGAVNLGQGFPDEDGPPKMLQAAQDAIA------------GGVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETEVL 90 (411)
T ss_dssp TTCEESSCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred CCeeeccCcCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCCCCCceEE
Confidence 35799999988764 4667776665421 1145798888899999999999988776 345787 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCC-CCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS-NGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++..++.+++++||+|+++.|+|+++...+... |++++.++++++ ++|.+|++.|++.+++ ++++
T Consensus 91 ~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~ 163 (411)
T 2o0r_A 91 VTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMA-GAHRVTVPLVPDGRGFALDADALRRAVTP------RTRA 163 (411)
T ss_dssp EEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETTEEECCHHHHHHHCCT------TEEE
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCEEEEeeccccccCCCCCHHHHHHhhcc------CceE
Confidence 9999999999999999999999999999999998888776 999999998643 3577999999988753 7899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+.. ..++++++.|||
T Consensus 164 v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~---------~~~~~i~~~s~s 232 (411)
T 2o0r_A 164 LIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA--RHLPLAGFDG---------MAERTITISSAA 232 (411)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTT---------TGGGEEEEEEHH
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcChhhccC---------CCCCEEEEeech
Confidence 99999999999999999999999999999999999999998777554 3344443311 236899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.+|++|+|+||++++ +.+.+.+..... .++.+++.|.++..+++.. .+++++.++.++++++++.+.|++.|+
T Consensus 233 K~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~ 308 (411)
T 2o0r_A 233 KMFNCTGWKIGWACGP-AELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGF 308 (411)
T ss_dssp HHTTCTTTCEEEEECC-HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcCCccceEEEEeeC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999995 555555544332 3446778888888888643 456788889999999999999998899
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-----------CCCeEEEEeecCCHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-----------EPGWFRICFANITEETLQ 419 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-----------~~~~~Ris~~~~~~e~l~ 419 (464)
++.++++|+|+|++++.... .+..+++..+++++||.++||..|... .++++||+++. ++++++
T Consensus 309 ~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~ 383 (411)
T 2o0r_A 309 AVHDSYGTYFLCADPRPLGY----DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLD 383 (411)
T ss_dssp EECCCCBSSEEEEECGGGTC----CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHHH
T ss_pred EecCCCeeEEEEEecCCCCC----CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHHH
Confidence 98888899999999975210 112357777877789999999888322 35789999985 899999
Q ss_pred HHHHHHHHHHHhhC
Q 037587 420 VALQRIKVFAQSCN 433 (464)
Q Consensus 420 ~~l~~l~~~l~~~~ 433 (464)
+++++|++++++.+
T Consensus 384 ~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 384 EAIRRLSVLAERPA 397 (411)
T ss_dssp HHHHHHGGGGC---
T ss_pred HHHHHHHHHHhccC
Confidence 99999998775543
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-44 Score=359.57 Aligned_cols=362 Identities=18% Similarity=0.291 Sum_probs=285.9
Q ss_pred CCceEEeecccccc---cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC-CCCC
Q 037587 35 PSGIIQMGLAENQL---SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK-FDPN 110 (464)
Q Consensus 35 ~~~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~~ 110 (464)
..++|||+.+.+.. +++.+.+++.+..... ......|++..|..++|+++|+++.+.+| ++ ++++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~ 110 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKE---------YHYTLQYSTTEGDPVLKQQILKLLERMYG--ITGLDED 110 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHS---------HHHHTSCCCTTCCHHHHHHHHHHHHHHHC--CCSCCGG
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhc---------chhhcCCCCCCCCHHHHHHHHHHHHhccC--CCCCCcc
Confidence 34689998876432 5666777766542210 01246788888899999999999977655 34 5688
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc--CC
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL--NL 188 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~--~~ 188 (464)
+|++|+|+++++..++.+++++||+|+++.|+|.++...+... |++++.++++++ .+|++.|++.+++.... +.
T Consensus 111 ~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~ 186 (425)
T 1vp4_A 111 NLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY-LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIK 186 (425)
T ss_dssp GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGG
T ss_pred cEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCC
Confidence 9999999999999999999999999999999999998888876 999999998753 38999999998752111 23
Q ss_pred ceEEE-EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 189 KVKGV-LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 189 ~~~~v-il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
++++| ++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+. ..+++++
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~----------~~~~~i~ 254 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFKIG----------GPERVVL 254 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHHHH----------CTTTEEE
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHHhC----------CCCCEEE
Confidence 68887 5789999999999999999999999999999999999998777554 334554441 2368899
Q ss_pred EcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 345 (464)
++||||.|| +|+|+||++++ +.+.+.+..... .++.+++.|.++..++++..+ .+++++.++.++++++.+.+.|
T Consensus 255 ~~s~sK~~~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L 331 (425)
T 1vp4_A 255 LNTFSKVLA-PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNAL 331 (425)
T ss_dssp EEESTTTTC-GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHH
T ss_pred Eeccccccc-cccceEEEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999996 455555544322 235688999999999986543 5678888999999999999999
Q ss_pred HhC-----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEeecCCHHHH
Q 037587 346 KVA-----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETL 418 (464)
Q Consensus 346 ~~~-----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Ris~~~~~~e~l 418 (464)
++. |+.+..+.+|+|+|++++...... +++..++++ ||.+.||..|+.. .++++||+++..+++++
T Consensus 332 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~------~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i 404 (425)
T 1vp4_A 332 EEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTW------EMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKI 404 (425)
T ss_dssp HHHSTTSTTCEECCCSBSSEEEEECCTTCCTT------TTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHH
T ss_pred HHhCCCCCceEEecCCccEEEEEEcCCCCCHH------HHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHH
Confidence 885 688877788899999998533222 366777655 9999999988643 46799999987679999
Q ss_pred HHHHHHHHHHHHhhC
Q 037587 419 QVALQRIKVFAQSCN 433 (464)
Q Consensus 419 ~~~l~~l~~~l~~~~ 433 (464)
++++++|++++++..
T Consensus 405 ~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 405 VEGIKRLREVVLEYG 419 (425)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=363.87 Aligned_cols=329 Identities=19% Similarity=0.299 Sum_probs=265.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC-------CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFD-------PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD 149 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-------~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~ 149 (464)
...|++..|.++||++|++++.+.+|. ..+ +++|++|+|+++++..++.+++++||.|++++|+|..+...
T Consensus 71 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 71 ALQYSPSAGIPELLSWLKQLQIKLHNP--PTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp HTSCCCTTCCHHHHHHHHHHHHHHHCC--TTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCC--CCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH
Confidence 457999999999999999999887772 232 36999999999999999999999999999999999999988
Q ss_pred cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh------hcCCceEEEEE-eCCCCCCCCCCCHHHHHHHHHHHhhCC
Q 037587 150 LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ------TLNLKVKGVLI-TNPSNPLGTAMTHQELNHLINFSKSKR 222 (464)
Q Consensus 150 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~------~~~~~~~~vil-~~P~NPtG~~~s~~~l~~i~~~~~~~~ 222 (464)
++.. |++++.++++++ .+|++.|++.+++.. ....++++|++ ++||||||.++|.+++++|+++|+++|
T Consensus 149 ~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~ 224 (425)
T 2r2n_A 149 LHPL-GCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYD 224 (425)
T ss_dssp HGGG-TCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHc-CCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcC
Confidence 8877 999999998642 489999999885210 00135787766 689999999999999999999999999
Q ss_pred eEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-
Q 037587 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS- 301 (464)
Q Consensus 223 ~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~- 301 (464)
++||+||+|+++.|.+. .+.++..+. ..+++++++||||+|| +|+|+||++++++ +.+.+.....
T Consensus 225 ~~li~De~~~~~~~~g~--~~~~~~~~~----------~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~-l~~~l~~~~~~ 290 (425)
T 2r2n_A 225 FLIIEDDPYYFLQFNKF--RVPTFLSMD----------VDGRVIRADSFSKIIS-SGLRIGFLTGPKP-LIERVILHIQV 290 (425)
T ss_dssp CEEEEECTTGGGBSSSS--CCCCTGGGC----------TTSCEEEEEESTTTTC-STTCCEEEEEEHH-HHHHHHHHHHT
T ss_pred CEEEEECCcccccCCCC--CCCCccccC----------CCCCEEEEccchhhcc-CccceEEEecCHH-HHHHHHHHHHH
Confidence 99999999998877654 334554441 2368999999999999 9999999999654 5554444322
Q ss_pred -cCCCChHHHHHHHHHcCC---chhhHHHHHHHHHHHHHHHHHHHHHHHhC--CC-eeecCCccEEEEEecCcccccCCh
Q 037587 302 -FGLVSSQTQYLLSRMLSD---KKFTCNYMKENRKRLRKRKEMLVSGLKVA--GI-RCLKSNAGLFCWVDMRHLLVSNTF 374 (464)
Q Consensus 302 -~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~-~~~~~~~g~f~~~~l~~~~~~~~~ 374 (464)
.++++.+.|.++..++++ ..+ .+++++.++.++++++.+.+.|++. |+ .+..+.+|+|+|++++.....
T Consensus 291 ~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~--- 366 (425)
T 2r2n_A 291 STLHPSTFNQLMISQLLHEWGEEGF-MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDV--- 366 (425)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCC---
T ss_pred hcCCCCHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCH---
Confidence 345788999999999886 333 6778889999999999999999885 76 466778899999999853221
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCCC---CCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHCN---EPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~~---~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+++...+.++||.+.||..|+.. ..+++||+++..+++++++++++|++++++.
T Consensus 367 ---~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 367 ---KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp ---HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 133344456889999999998753 3579999998558999999999999998753
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=364.64 Aligned_cols=355 Identities=17% Similarity=0.201 Sum_probs=282.2
Q ss_pred CceEEeecccc-cccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc--
Q 037587 36 SGIIQMGLAEN-QLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK-- 111 (464)
Q Consensus 36 ~~~i~l~~~~n-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~-- 111 (464)
.++|||+.+.+ +++. +.+ .+++..... +.. .....|++..|..++|+++|+++.+.. +++++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~-~~~~a~~~~-------~~~-~~~~~y~~~~g~~~lr~~ia~~~~~~~---~~~~~~~~~ 114 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFA-SSLDAMFND-------LTP-DEIFPYAPPQGIEELRDLWQQKMLRDN---PELSIDNMS 114 (430)
T ss_dssp TCSEECCCSSCEETTEECCC-HHHHTTBSS-------CCG-GGTSSCCCTTCCHHHHHHHHHHHHHHC---TTCCGGGBC
T ss_pred CCcEEeeeeeccCCCCchhh-HHHHHHHHh-------cCc-ccccccCCCCCCHHHHHHHHHHHhccC---cccCCCccc
Confidence 46799999998 6642 333 112221111 000 135689888899999999999997653 3467888
Q ss_pred -EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhccc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 112 -LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKW-RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 112 -i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
|++|+|+++++..++.+++++||+|+++.|+|+++...+.. . |++++.+++++++ |.+|+++|++.+++ .+.+
T Consensus 115 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~-~~~d~~~l~~~l~~---~~~~ 189 (430)
T 2x5f_A 115 RPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRN-GANLQTYPIFDKD-GHYTTDSLVEALQS---YNKD 189 (430)
T ss_dssp CCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTT-CCEEEEECCBCTT-SCBCSHHHHHHHHH---CCSS
T ss_pred eEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhc-CCeEEEEeccCcc-CCcCHHHHHHHHHh---cCCC
Confidence 99999999999999999999999999999999999888887 6 9999999987543 78999999999864 1236
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh-----CCeEEEEeccccccccCCCCCCccchh-hhhhccCcCCCCCCCC
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKS-----KRIHIVSDEIYSGTVFDSPSSSFISIM-EAVMDRNIDESDDLWS 263 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~-----~~~~lI~Deay~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~ 263 (464)
++++++++||||||.++|.+++++|+++|++ +|+++|+||+|.++.+.+. .+.++. .+.. ..+
T Consensus 190 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~---------~~~ 258 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV--YTQSLFTALTN---------LHS 258 (430)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS--CCSCHHHHHHT---------TCC
T ss_pred CEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc--cchHHHHHHhh---------ccC
Confidence 8899999999999999999999999999999 9999999999998777654 334544 4421 236
Q ss_pred c---EEEEcCCCcCCCCCccEEEEEEe--cCHHHHHHHHHhc------ccCCCChHHHHHHHHHcC-CchhhHHHHHHHH
Q 037587 264 R---IHIVYSLSKDFSMPGFRVGMIYS--NNERVVSAATKMS------SFGLVSSQTQYLLSRMLS-DKKFTCNYMKENR 331 (464)
Q Consensus 264 ~---vi~l~S~SK~~g~~GlRiG~l~~--~~~~~~~~~~~~~------~~~~~s~~~q~~~~~~l~-~~~~~~~~~~~~~ 331 (464)
+ +++++||||.||++|+|+||+++ +++.+.+.+.... ..++++++.|.++..+++ +.++ .+.+++.+
T Consensus 259 ~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~ 337 (430)
T 2x5f_A 259 NAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNI 337 (430)
T ss_dssp TTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHH
T ss_pred CcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHH
Confidence 7 89999999999999999999998 2344545444332 235688899999999998 8766 45566689
Q ss_pred HHHHHHHHHHHHHHH----hCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 037587 332 KRLRKRKEMLVSGLK----VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFR 407 (464)
Q Consensus 332 ~~~~~~~~~l~~~l~----~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 407 (464)
+.++++++.+.+.|+ +.|+++.++++|+|+|++++ .. +..+++..|++++||.+.|| .++++|
T Consensus 338 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~------~~~~~~~~l~~~~gi~v~~g------~~~~iR 404 (430)
T 2x5f_A 338 QTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DV------DPEALRKHLIDKYSIGVIAL------NATDIR 404 (430)
T ss_dssp HHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SS------CHHHHHHHHHHHHCEECEEC------SSSEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CC------CHHHHHHHHHHhCCEEEecC------CCCeEE
Confidence 999999999999998 66888888999999999997 21 12357777776589999998 357899
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 408 ICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 408 is~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
|+++..+++++++++++|++++++.
T Consensus 405 is~~~~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 405 IAFSCVEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp EEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhc
Confidence 9999558899999999999998765
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=358.38 Aligned_cols=352 Identities=15% Similarity=0.215 Sum_probs=282.0
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHH-HHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPD-AKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~-lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
.++|+|+.+.+.++ ++.+.+++.+... .....|++. ..+ +|+++|+++++.+| +++++++|+
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~~lr~~la~~l~~~~g--~~~~~~~v~ 91 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLM------------HGVFGYSRW--KNDEFLAAIAHWFSTQHY--TAIDSQTVV 91 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCS--CCHHHHHHHHHHHHHHSC--CCCCGGGEE
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHh------------CCCCCCCCC--ChHHHHHHHHHHHHHhcC--CCCCHHHEE
Confidence 57899999988764 4667777666421 123567764 578 99999999988766 346788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCC-CcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSN-GFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++..++.+++++||+|+++.|+|+++...+... |++++.+++++++ .|.+|+++|++.+++ .++++
T Consensus 92 ~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-----~~~~~ 165 (390)
T 1d2f_A 92 YGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECKI 165 (390)
T ss_dssp EESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHC-CCEEEEeecccCCCccccCHHHHHHHhcc-----CCCeE
Confidence 9999999999999999999999999999999998888877 9999999987543 578999999998853 26899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+.. .. ... +.|||
T Consensus 166 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~---------~~-~d~-~~s~s 232 (390)
T 1d2f_A 166 MLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNVAR---------GD-WAL-LTSGS 232 (390)
T ss_dssp EEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGTCC---------SS-EEE-EECSH
T ss_pred EEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHcch---------hh-Hhh-ccCcc
Confidence 99999999999999999999999999999999999999998776554 3445444421 11 023 89999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhc----ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh-
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMS----SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV- 347 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 347 (464)
|.+|++|+|+||++++++.+.+.+.... .+++++.+.|.++.++++.. .+++++.++.++++++.+.+.|++
T Consensus 233 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (390)
T 1d2f_A 233 KSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLKDNLTYIADKMNAA 309 (390)
T ss_dssp HHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987666655554433 34467888888888877642 446788888999999999999998
Q ss_pred C-CCeeecCCccEEEEEecCcc-cccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHH
Q 037587 348 A-GIRCLKSNAGLFCWVDMRHL-LVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRI 425 (464)
Q Consensus 348 ~-g~~~~~~~~g~f~~~~l~~~-~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 425 (464)
+ |+.+.++.+|+++|++++.. .. ..+++..+++++||.++||..|+...++++||+++. +++++++++++|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l 382 (390)
T 1d2f_A 310 FPELNWQIPQSTYLAWLDLRPLNID------DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGL 382 (390)
T ss_dssp CSSCCCCCCSBCSEEEEECGGGCCC------HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHH
T ss_pred CCCCEEecCCccEEEEEEccccCCC------HHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHH
Confidence 5 88888889999999999753 11 235777776578999999998875457899999996 789999999999
Q ss_pred HHHHHhh
Q 037587 426 KVFAQSC 432 (464)
Q Consensus 426 ~~~l~~~ 432 (464)
++++++.
T Consensus 383 ~~~l~~~ 389 (390)
T 1d2f_A 383 INAIRAV 389 (390)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=375.41 Aligned_cols=355 Identities=18% Similarity=0.236 Sum_probs=270.6
Q ss_pred eEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHH-HHHcCCCCC-CCCCcEEEe
Q 037587 38 IIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLM-ARIRGNKVK-FDPNKLVLT 115 (464)
Q Consensus 38 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~-~~~~~~~~~-~~~~~i~it 115 (464)
+|+|+++++.++++.+.+.+.+. .....|+++.|..++|+++++++ .+..+.+.. .++++|++|
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~--------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t 171 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDG--------------ILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAV 171 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHH--------------HHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEE
T ss_pred hhecccCCCCCCChHHHHHHHHh--------------hhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEE
Confidence 78999999888776554444432 11257999989999999988866 443332221 256899999
Q ss_pred CChHHHHHHHHHH-----hcCCCCeEEEcCCCCCChhhhcccC-CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 116 AGSTAANETLMFC-----LADPGDAFLLPTPYYPGFDRDLKWR-PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 116 ~G~~~al~~~~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
+|+++++..++.+ ++++||.|++++|+|+.|...+... .|++++.++++++++|.+|+++|++.+. .+
T Consensus 172 ~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~------~~ 245 (546)
T 2zy4_A 172 EGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD------PA 245 (546)
T ss_dssp EHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS------TT
T ss_pred CCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC------CC
Confidence 9999999999988 5789999999999999998764322 2789999999877789999999987653 37
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHH--hhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFS--KSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~--~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
+++|+++|||||||.++|.+++++|+++| +++|++||+||+|.++.+. +.++.... .+++++
T Consensus 246 ~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~-----~~s~~~~~-----------~~~~i~ 309 (546)
T 2zy4_A 246 IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD-----FQSLFAIC-----------PENTLL 309 (546)
T ss_dssp EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT-----CCCHHHHC-----------GGGEEE
T ss_pred CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc-----CcCHHHhC-----------CCCEEE
Confidence 89999999999999999999999999999 7899999999999986542 23444442 268999
Q ss_pred EcCCCcCCCCCccEEEEEEecCHHHHHHHHH-------------h-------------------------cccCCCChHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATK-------------M-------------------------SSFGLVSSQT 309 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-------------~-------------------------~~~~~~s~~~ 309 (464)
++||||.+|++|+|+||++++++.+.+.+.. . .....++.+.
T Consensus 310 ~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 389 (546)
T 2zy4_A 310 VYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQ 389 (546)
T ss_dssp EEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHH
T ss_pred EEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHH
Confidence 9999999999999999999976523333211 1 1112467788
Q ss_pred HHHH-----HHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccc---cCCh-------
Q 037587 310 QYLL-----SRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV---SNTF------- 374 (464)
Q Consensus 310 q~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~---~~~~------- 374 (464)
|.++ .+++++. ..+.+++++.++++++.+.+.|. .++.+.++++|||+|++++.... ...+
T Consensus 390 Q~a~a~~a~~all~~~---~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~ 465 (546)
T 2zy4_A 390 QVQMALFSLFALMDEA---DEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQ 465 (546)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhcc
Confidence 8764 3455543 34678888999999999999986 56666788999999999863110 0000
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
....+++.+++.++||.|.||+.|+. ..+++||+++..+++++++++++|+++++++.
T Consensus 466 ~~~~~~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 466 SSTGDMLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp CCHHHHHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 01223456677788999999999986 46799999987689999999999999987654
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=360.70 Aligned_cols=355 Identities=22% Similarity=0.385 Sum_probs=285.2
Q ss_pred CCceEEeecccc---ccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 35 PSGIIQMGLAEN---QLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 35 ~~~~i~l~~~~n---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
+.++|+|+.+.+ .++ ++.+.+++.+... .....|++..|..++|+++++++++.++ ++++++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~ 102 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK------------EGHNYYGDSEGLPELRKAIVEREKRKNG--VDITPD 102 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGG
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCCHH
Confidence 356799999988 443 4556666554321 1124688878899999999999998776 446789
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|++|+|+++++..++.+++++||.|++++|+|+++...+... |++++.++++++++|.+|++.|++.+++ ++
T Consensus 103 ~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~ 175 (406)
T 1xi9_A 103 DVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY-GGKPVEYRTIEEEDWQPDIDDIRKKITD------RT 175 (406)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEEEEGGGTSEECHHHHHHHCCT------TE
T ss_pred HEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCCCcCCcCCHHHHHHhhCc------Cc
Confidence 9999999999999999999999999999999999998888776 9999999987545788999999998754 78
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc-EEEEc
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR-IHIVY 269 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-vi~l~ 269 (464)
++|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ..++..+ + .++ +++++
T Consensus 176 ~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~-~----------~~~~~i~~~ 241 (406)
T 1xi9_A 176 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE---HISPGSL-T----------KDVPVIVMN 241 (406)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC---CCCHHHH-C----------SSSCEEEEE
T ss_pred eEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHc-C----------CCceEEEEe
Confidence 9999999999999999999999999999999999999999998766332 2344444 1 267 89999
Q ss_pred CCCcCCCCCccEEEEEE--ecCH---HHHHHHHHhccc-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIY--SNNE---RVVSAATKMSSF-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~--~~~~---~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
||||.+|++|+|+||++ ++++ .+.+.+.....+ ++++++.|.++.++++.. .+++++.++.++++++.+.+
T Consensus 242 s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~ 318 (406)
T 1xi9_A 242 GLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYK 318 (406)
T ss_dssp ESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 7651 444444433322 567889999999888532 23477788889999999999
Q ss_pred HHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHH
Q 037587 344 GLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVAL 422 (464)
Q Consensus 344 ~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 422 (464)
.|+++ |+.+.++++|+|+|++++.... .+..+++..+++++||.+.||..|+...++++||+++ .+++++++++
T Consensus 319 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~-~~~~~i~~~~ 393 (406)
T 1xi9_A 319 RLNEIPGISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL-PPIEILEEAM 393 (406)
T ss_dssp HHHTSTTEECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHH
T ss_pred HHHhCCCCeeecCCeeEEEEEecCccCC----CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec-CCHHHHHHHH
Confidence 99988 8888888889999988864210 1123577777767899999999887545689999999 6999999999
Q ss_pred HHHHHHHHhh
Q 037587 423 QRIKVFAQSC 432 (464)
Q Consensus 423 ~~l~~~l~~~ 432 (464)
++|++++++.
T Consensus 394 ~~l~~~l~~~ 403 (406)
T 1xi9_A 394 DRFEKFMKER 403 (406)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=348.33 Aligned_cols=339 Identities=17% Similarity=0.233 Sum_probs=279.0
Q ss_pred CCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc
Q 037587 33 HNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 33 ~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~ 111 (464)
..+.++|||+.|+|+++ ++.+.+++.+. +.....|+. .+..++|+++|++++ +++++
T Consensus 13 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~ 70 (354)
T 3ly1_A 13 PSTDNPIRINFNENPLGMSPKAQAAARDA-------------VVKANRYAK-NEILMLGNKLAAHHQ--------VEAPS 70 (354)
T ss_dssp CCSSSCEECSSCCCSSCCCHHHHHHHHHT-------------GGGTTSCCH-HHHHHHHHHHHHHTT--------SCGGG
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHH-------------HhhCcCCCC-CchHHHHHHHHHHhC--------CChHH
Confidence 44668899999999985 56777776654 234567754 467999999999985 67899
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
|++|+|+++++..++.+++++||+|+++.|+|..+...++.. |++++.++.++ ++.+|++++++.+++ +++++
T Consensus 71 i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~l~~----~~~~~ 143 (354)
T 3ly1_A 71 ILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIA-GMKVTKVKMLD--NWAFDIEGLKAAVAA----YSGPS 143 (354)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECCCT--TSCCCHHHHHHHHHT----CSSCE
T ss_pred EEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHHHhcc----CCCCC
Confidence 999999999999999999999999999999999998888877 99999999864 578999999999872 13889
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+|++++||||||.++|.+++++|+++| ++|+++|+||+|.++.+.+. ..+....... ..+++++++||
T Consensus 144 ~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~---~~~~~~~~~~--------~~~~~i~~~s~ 211 (354)
T 3ly1_A 144 IVYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR---FRSISPMITQ--------GAENIILLKTF 211 (354)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT---CCCSHHHHHT--------TCSSEEEEEES
T ss_pred EEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc---cCCHHHHhhh--------cCCCEEEEeeC
Confidence 999999999999999999999999999 89999999999998766543 2343334331 22788999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
||.+|++|+|+||+++ ++.+.+.+......++++++.|.++..++++.+ ++++.++.++++++++.+.|+++|+.
T Consensus 212 sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~ 286 (354)
T 3ly1_A 212 SKIHAMAGMRVGYAVA-HPTVIALMGRYVAGEKINFSGVDAALASMNDSA----FITYSKKSNDVSRQILLKALEDLKLP 286 (354)
T ss_dssp SSTTCCGGGCCEEEEC-CHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhccChhhhheeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 9999999999999999 556666666666667789999999999998754 47888889999999999999988988
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++.+ +|+|++++. +..++...|. ++||.++ |..++ .++++||+++ +++++++++++|++++++
T Consensus 287 ~~~~~~-~~~~~~~~~--------~~~~~~~~l~-~~gi~v~-g~~~~--~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 287 YLPSEG-NFVFHQLVV--------PLKDYQTHMA-DAGVLIG-RAFPP--ADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp BCCCCS-SEEEEECSS--------CHHHHHHHHH-HTTEECC-CCCTT--CTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred ECCCCc-eEEEEECCC--------CHHHHHHHHH-HCCEEEe-ecCCC--CCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 887665 579999974 1224666665 6799998 66443 5789999998 689999999999999876
Q ss_pred h
Q 037587 432 C 432 (464)
Q Consensus 432 ~ 432 (464)
.
T Consensus 352 ~ 352 (354)
T 3ly1_A 352 S 352 (354)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=357.24 Aligned_cols=352 Identities=16% Similarity=0.212 Sum_probs=275.3
Q ss_pred CceEEeecccc-----cc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 36 SGIIQMGLAEN-----QL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 36 ~~~i~l~~~~n-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
.++|+|+.++. ++ +++.+.+++.+... .....|++..|.++||+++++++....+.. .+
T Consensus 38 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~---~~ 102 (418)
T 3rq1_A 38 ENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD------------SEHVGYAPIAGIPDFLCAAEKECFGNFRPE---GH 102 (418)
T ss_dssp GGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH------------HHHHSCCCTTCCHHHHHHHHHHHHGGGCCS---SE
T ss_pred CCeEECCCCcccCCCCCccccHHHHHHHHHhcc------------cccCCCCCCCChHHHHHHHHHHHhcccCcc---cc
Confidence 46899999963 44 45667777665321 134579888899999999999997544310 12
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
++|++|+|+++++..++.+++++||.|++++|+|..+...+... |++++.+++++++ |.+|++.|++.+++.... +
T Consensus 103 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~--~ 178 (418)
T 3rq1_A 103 IRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDT-GRTLVTYSLFDEH-NNFNHEAFQNRVNELAAK--Q 178 (418)
T ss_dssp EEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECSBCTT-SSBCHHHHHHHHHHHHHH--C
T ss_pred ccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHc-CCEEEEEeeeCCC-CCcCHHHHHHHHHHhhcc--C
Confidence 39999999999999999999999999999999999999888877 9999999986443 789999999998753111 3
Q ss_pred eE-EEEEeCC-CCCCCCCCCHHHHHHHHHHHh------hCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCC
Q 037587 190 VK-GVLITNP-SNPLGTAMTHQELNHLINFSK------SKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261 (464)
Q Consensus 190 ~~-~vil~~P-~NPtG~~~s~~~l~~i~~~~~------~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (464)
++ ++++++| |||||.+++.+++++|+++|+ ++|+++|+||+|.++.+.+. ...++.....+ .
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~--------~ 248 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKD--EVRAFFNKFSH--------L 248 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHH--HHHGGGGGGTT--------C
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChH--HHHHHHHHHHh--------c
Confidence 44 7888999 999999999999999999999 89999999999998655432 22233333222 2
Q ss_pred CCc--EEEEcCCCcCCCCCccEEEEEEe--cCHHHHHHHHHhc------ccCCCChHHHHHHHHHcCCchhh---HHHHH
Q 037587 262 WSR--IHIVYSLSKDFSMPGFRVGMIYS--NNERVVSAATKMS------SFGLVSSQTQYLLSRMLSDKKFT---CNYMK 328 (464)
Q Consensus 262 ~~~--vi~l~S~SK~~g~~GlRiG~l~~--~~~~~~~~~~~~~------~~~~~s~~~q~~~~~~l~~~~~~---~~~~~ 328 (464)
.++ +++++||||.||++|+|+||+++ +++.+.+.+.... .+..++.++|.++..++++.++. .+..+
T Consensus 249 ~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 328 (418)
T 3rq1_A 249 PKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERN 328 (418)
T ss_dssp CTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 244 68899999999999999999988 2455555444332 22357889999999999987532 34455
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 037587 329 ENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRI 408 (464)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ri 408 (464)
+.++.++++++.+.+.|+++|+++.++++|+|+|++++. ..+++.. |.++||.++|| ++++||
T Consensus 329 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~-l~~~gi~v~~g-------~~~iRi 391 (418)
T 3rq1_A 329 CYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTDS---------ANAICEE-LKKEHIYVIAL-------ANGIRI 391 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECTT---------HHHHHHH-HHHTTEECEEC-------SSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCCC---------HHHHHHH-HHhCCEEEecC-------CCCeEE
Confidence 677889999999999999989999999999999998742 2246654 56889999997 357999
Q ss_pred EeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 409 CFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 409 s~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+++.++++++++++++|++++++..
T Consensus 392 s~~~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 392 AACGIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp EGGGSCHHHHTTHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHh
Confidence 9986699999999999999998754
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=357.08 Aligned_cols=352 Identities=18% Similarity=0.260 Sum_probs=287.0
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+.+++.++ ++.+.+++.+... .....|++ +..++++++++++.+.++ .++++++|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~--~~~~~~~~l~~~l~~~~g--~~~~~~~v~ 94 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLE------------QEIYGYTT--RPDSYNESIVNWLYRRHN--WKIKSEWLI 94 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCBC--CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHh------------CCCCCCCC--CCHHHHHHHHHHHHHHhC--CCCcHHHeE
Confidence 357899999998875 4677777666421 12345654 569999999999998876 346788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC--CCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS--SSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
+|+|+++++..++.+++++||+|+++.|+|.++...+... |++++.++++ .++.|.+|+++++++++ +++
T Consensus 95 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~l~~~l~-------~~~ 166 (391)
T 4dq6_A 95 YSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNN-NRELIISPLQKLENGNYIMDYEDIENKIK-------DVK 166 (391)
T ss_dssp EESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHT-TCEEEECCCEECTTSCEECCHHHHHHHCT-------TEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHc-CCeEEeeeeeecCCCceEeeHHHHHHHhh-------cCC
Confidence 9999999999999999999999999999999998888877 9999999987 45678899999998874 278
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+..+ ..+++++++||
T Consensus 167 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~--------~~~~~i~~~s~ 236 (391)
T 4dq6_A 167 LFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--KHIPMASISKE--------FEKNTITCMAP 236 (391)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSCHH--------HHHTEEEEECS
T ss_pred EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--CccCHHHcCcc--------ccCcEEEEEec
Confidence 999999999999999999999999999999999999999998777654 33454444221 12688999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhc---ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMS---SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
||.+|++|+|+||++++++.+.+.+.... ..++.+.+.+.++..++... .+++++.++.++++++.+.+.|++.
T Consensus 237 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~ 313 (391)
T 4dq6_A 237 TKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG---ESWLESFLEYLESNIDFAIKYINEN 313 (391)
T ss_dssp HHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999997756666555442 23357788888888877753 4567888889999999999999884
Q ss_pred --CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 037587 349 --GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426 (464)
Q Consensus 349 --g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 426 (464)
|+.+.++++++++|++++... ....+++..|++++||.++||..|+....+++||+++ .+++++++++++|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~ 387 (391)
T 4dq6_A 314 MPKLKVRKPEGTYLLWVDFSALG-----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIK 387 (391)
T ss_dssp CTTSEECCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC-SCHHHHHHHHHHHH
T ss_pred CCCCEecCCCccEEEEEEhhhcC-----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc-CCHHHHHHHHHHHH
Confidence 899999999999999997521 1123577777655599999999998766789999999 58999999999999
Q ss_pred HHH
Q 037587 427 VFA 429 (464)
Q Consensus 427 ~~l 429 (464)
+++
T Consensus 388 ~~l 390 (391)
T 4dq6_A 388 NAI 390 (391)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=365.22 Aligned_cols=358 Identities=14% Similarity=0.169 Sum_probs=287.4
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+.|.|+++ ++.+.+++.+.... .....|++..|..++|+++|+++++.++ +++++++|+
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~i~ 109 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLRE-----------GVASIYPNLDGLPELKQEASRFAKLFVN--IDIPARACV 109 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHH-----------TGGGSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhC-----------CcCcCCCCCCChHHHHHHHHHHHHHhhC--CCCCcccEE
Confidence 357899999999886 46677776654221 1226799888899999999999998776 456789999
Q ss_pred EeCChHHHHHHHHHHhc--CCCC--eEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 114 LTAGSTAANETLMFCLA--DPGD--AFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 114 it~G~~~al~~~~~~l~--~~gd--~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
+|+|+++++..++.+++ ++|| +|+++.|+|..+...+... |++++.++++ +++|.+|++.++++++. .+
T Consensus 110 ~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~~~~~d~~~l~~~l~~-----~~ 182 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRIL-GQKFESFDLF-EYRGEKLREKLESYLQT-----GQ 182 (437)
T ss_dssp EESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHH-TCCCEEEEGG-GGCTTHHHHHHHHHHTT-----TC
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHc-CCEEEEEeec-CCCCccCHHHHHHHHhc-----CC
Confidence 99999999999999998 9999 9999999999998888877 9999999987 45778899999998832 27
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc---cch-hhhhhccCcCCCCCCCCcE
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF---ISI-MEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~---~~~-~~l~~~~~~~~~~~~~~~v 265 (464)
+++|++++||||||.++|.+++++|+++|+++|+++|+||+|+++.+.+. ... +++ ..+ .+ ..+++
T Consensus 183 ~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~-~~--------~~~~~ 252 (437)
T 3g0t_A 183 FCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD-YSHPGEPLYQPSV-AN--------YTDNY 252 (437)
T ss_dssp CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC-CCSTTSSCCCCCG-GG--------TCSCE
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC-cCcccccchhhcc-CC--------CCCcE
Confidence 89999999999999999999999999999999999999999998766532 011 011 222 11 24789
Q ss_pred EEEcCCCcCCCCCccEEEEEEecCHHHHH-H-----------------HHHhc--ccCCCChHHHHHHHHHcCCchhhHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYSNNERVVS-A-----------------ATKMS--SFGLVSSQTQYLLSRMLSDKKFTCN 325 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~~~~~~~~-~-----------------~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~ 325 (464)
++++||||.+|++|+|+||+++++ .+.+ . +.... ..++++.+.|.++..++++.+...+
T Consensus 253 i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 331 (437)
T 3g0t_A 253 ILALSSSKAFSYAGQRIGVLMISG-KLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEY 331 (437)
T ss_dssp EEEEESTTTTSCGGGCCEEEEECH-HHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSC
T ss_pred EEEEcCccCCCCccceeEEEEECH-HHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHH
Confidence 999999999999999999999964 4444 3 33322 2356888999999998876532122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeee-------cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 326 YMKENRKRLRKRKEMLVSGLKVAGIRCL-------KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~-------~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
++++.++.++++++.+.+.|+++|+++. ++.+++|+|++++ ... ..+++..|+ ++||.+.||..|
T Consensus 332 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~l~~~L~-~~gi~v~~~~~~ 403 (437)
T 3g0t_A 332 NFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK-GMD------SSKLIEKFV-RYGMCAITLKTT 403 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET-TCC------HHHHHHHHH-HTTEECEESTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC-CCC------HHHHHHHHH-HcCeEEeecccc
Confidence 3778888999999999999999998887 5478889999997 211 235677765 569999999988
Q ss_pred CCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 399 HCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 399 ~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+...++++||+++..+++++++++++|++++++
T Consensus 404 ~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 404 GSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 765557899999977899999999999998764
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=357.69 Aligned_cols=354 Identities=17% Similarity=0.230 Sum_probs=292.0
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+++.+.++ ++.+.+++.+... .....|++. ..++++++++++.+.++ .++++++|+
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~l~~~l~~~~g--~~~~~~~v~ 123 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGR------------EHIFGYNYF--NDDLYQAVIDWERKEHD--YAVVKEDIL 123 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHH------------HCCSSCBCC--CHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHh------------cCCcCCCCC--CHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 568899999988775 4777777766422 123456654 38999999999998876 346788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC-CCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++..++.+++++||+|+++.|+|.++...+... |.+++.+|++ .++.|.+|++.|++++.+ +++++
T Consensus 124 ~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~le~~i~~-----~~~~~ 197 (421)
T 3l8a_A 124 FIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLN-DHRLVENSLQIINGRFEIDFEQLEKDIID-----NNVKI 197 (421)
T ss_dssp EESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHT-TEEEEEEECEEETTEEECCHHHHHHHHHH-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHC-CCEEEeccccccCCCeeeCHHHHHHHhhc-----cCCeE
Confidence 9999999999999999999999999999999998888877 9999999986 556788999999999874 27999
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+..+ ..++++++.|+|
T Consensus 198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~--------~~~~~i~~~s~s 267 (421)
T 3l8a_A 198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN--THHSLNTLDAS--------YKDFTIILSSAT 267 (421)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCTT--------GGGTEEEEECSH
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCccHHHcCch--------hcCcEEEEEeCh
Confidence 99999999999999999999999999999999999999999877654 44455444321 237889999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhc---ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMS---SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA- 348 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 348 (464)
|++|++|+|+||++++++.+.+.+.... .+.+.+++.+.++.++++.. .+++++.++.++++++++.+.|+++
T Consensus 268 K~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 344 (421)
T 3l8a_A 268 KTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG---KPWLEELKTVIEGNIKLVIKELEAKT 344 (421)
T ss_dssp HHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999997566766555433 33457888998888888742 4568888889999999999999986
Q ss_pred CCeeecCCccEEEEEecCcc-cccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 349 GIRCLKSNAGLFCWVDMRHL-LVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 349 g~~~~~~~~g~f~~~~l~~~-~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
++.+.++++++++|++++.. ... .+++..+++++||.+.||..|+..+.+++||+++ .+++++++++++|++
T Consensus 345 ~i~~~~~~~~~~~~v~~~~~~~~~------~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~i~~~l~~l~~ 417 (421)
T 3l8a_A 345 KIKVMEPEGTYLVWLDFSAYAIAQ------PQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPKNTVQEALSRIIS 417 (421)
T ss_dssp SCEEECCSBSSEEEEECGGGTCCT------THHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHH
T ss_pred CceEeCCCeeEEEEEeccccCCCH------HHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec-CCHHHHHHHHHHHHH
Confidence 89999999999999999752 221 2477777777899999999998767889999999 489999999999998
Q ss_pred HHH
Q 037587 428 FAQ 430 (464)
Q Consensus 428 ~l~ 430 (464)
+++
T Consensus 418 ~l~ 420 (421)
T 3l8a_A 418 VFG 420 (421)
T ss_dssp HC-
T ss_pred HHh
Confidence 875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=350.05 Aligned_cols=330 Identities=19% Similarity=0.353 Sum_probs=266.0
Q ss_pred cCCCCCCCC--CCceEEeecccccccHH-HHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 26 NNPYDQLHN--PSGIIQMGLAENQLSFD-LLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 26 ~~~y~~~~~--~~~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
-.+|.+... ..++|||+.|+|+++++ .+ . +....+|++. +..++|+++|++++
T Consensus 17 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v-----a--------------~~~~~~Y~~~-~~~~lr~~la~~~~---- 72 (356)
T 1fg7_A 17 LTPYQSARRLGGNGDVWLNANEYPTAVEFQL-----T--------------QQTLNRYPEC-QPKAVIENYAQYAG---- 72 (356)
T ss_dssp CCCCCCCCCCTTTCSEECSSCCCSSCCCCCC-----C--------------CCCTTSCCCS-SCHHHHHHHHHHHT----
T ss_pred cCCCCCCcccCCCceEEeeCCCCCCCCCHhH-----h--------------hhhhccCCCc-cHHHHHHHHHHHhC----
Confidence 345554432 34789999999998653 22 1 1345689876 47999999999995
Q ss_pred CCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-CeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHH
Q 037587 103 NKVKFDPNKLVLTAGSTAANETLMFCLADPG-DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181 (464)
Q Consensus 103 ~~~~~~~~~i~it~G~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 181 (464)
+++++|++|+|+++++..++.+++++| |+|+++.|+|+.+...+... |++++.++++ ++|.+|++++++.++
T Consensus 73 ----~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~ 145 (356)
T 1fg7_A 73 ----VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVECRTVPTL--DNWQLDLQGISDKLD 145 (356)
T ss_dssp ----SCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH-TCEEEECCCC--TTSCCCHHHHHTSCT
T ss_pred ----CChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeeCC--CCCCCCHHHHHHHhc
Confidence 678999999999999999999999999 99999999999999888877 9999999876 357889999887652
Q ss_pred HHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCC
Q 037587 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261 (464)
Q Consensus 182 ~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (464)
++++|++++||||||.++|.+++++++++|+ +|+++|+||+|.++. .. .++..+.. .
T Consensus 146 -------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~--~~----~~~~~~~~---------~ 202 (356)
T 1fg7_A 146 -------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFC--PQ----ASLAGWLA---------E 202 (356)
T ss_dssp -------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGS--GG----GCSGGGTT---------T
T ss_pred -------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhc--CC----CcHHHHHh---------h
Confidence 5789999999999999999999999999999 999999999999753 11 23223322 3
Q ss_pred CCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHH
Q 037587 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341 (464)
Q Consensus 262 ~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 341 (464)
.+++++++||||.||++|+|+||+++ ++.+.+.+......+++++++|.++.+++++.++ +++++.++.++++++++
T Consensus 203 ~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l 279 (356)
T 1fg7_A 203 YPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYL 279 (356)
T ss_dssp CTTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecchHhhcCchhhhEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999 5556666666666667899999999999986543 24778888899999999
Q ss_pred HHHHHhCC--CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeC-CCCCCCCCCCeEEEEeecCCHHHH
Q 037587 342 VSGLKVAG--IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP-GSSCHCNEPGWFRICFANITEETL 418 (464)
Q Consensus 342 ~~~l~~~g--~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~p-g~~f~~~~~~~~Ris~~~~~~e~l 418 (464)
.+.|++++ +.+.++ +|+|+|++++. ..+++..| .++||.++| |..|+. ++++||+++ +++++
T Consensus 280 ~~~L~~~~~~~~~~~~-~~~~~~~~~~~---------~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~--~~~e~ 344 (356)
T 1fg7_A 280 IAALKEIPCVEQVFDS-ETNYILARFKA---------SSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG--TREES 344 (356)
T ss_dssp HHHHHHSTTEEEECCC-SSSEEEEEETT---------HHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC--CHHHH
T ss_pred HHHHHhCCCceEECCC-CCeEEEEECCC---------HHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC--CHHHH
Confidence 99999886 444444 56699999861 22466666 578999999 877763 569999998 58999
Q ss_pred HHHHHHHHH
Q 037587 419 QVALQRIKV 427 (464)
Q Consensus 419 ~~~l~~l~~ 427 (464)
++++++|++
T Consensus 345 ~~~~~~l~~ 353 (356)
T 1fg7_A 345 QRVIDALRA 353 (356)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=346.99 Aligned_cols=329 Identities=19% Similarity=0.243 Sum_probs=273.4
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.|+|+++ ++.+.+++.+. ......|++ .+..++|++++++++ +++++|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~-~~~~~lr~~la~~~~--------~~~~~v~~ 89 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANS-------------SVETEIYPD-GWASSLRKEVADFYQ--------LEEEELIF 89 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTC-------------BSCCCBC-----CHHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHH-------------HHHhhcCCC-cchHHHHHHHHHHhC--------CChhhEEE
Confidence 57899999999985 57777777663 234566765 478999999999996 67899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.+++++||+|+++.|+|..+...++.. |++++.++.++ ++.+|++++++.+.+ ++++|+
T Consensus 90 ~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~ 160 (363)
T 3ffh_A 90 TAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIE-GAEVREIPLLQ--DGEHDLEGMLNAIDE------KTTIVW 160 (363)
T ss_dssp ESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHH-TCEEEEEECCT--TSCCCHHHHHHHCCT------TEEEEE
T ss_pred eCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCCC--CCCcCHHHHHHhccc------CCCEEE
Confidence 999999999999999999999999999999998888877 99999999875 578999999998754 799999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
+++||||||.++|.+++.++++.|++ |+++|+||+|+++.+ +. ..+...... ..+++++++||||.
T Consensus 161 ~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~---~~~~~~~~~---------~~~~~i~~~s~sK~ 226 (363)
T 3ffh_A 161 ICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ---PEKHEKLVR---------TYKNLIITRTFSKI 226 (363)
T ss_dssp EESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC---CCCCGGGGG---------TCTTEEEEEESSST
T ss_pred EeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc---ccCHHHHhh---------cCCCEEEEeechhh
Confidence 99999999999999999999998887 999999999998766 32 223333322 34789999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV-AGIRCL 353 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~ 353 (464)
+|++|+|+||+++ ++.+.+.+......++++.+.|.++..++++.+ ++++.++.++++++++.+.|++ .|+.+.
T Consensus 227 ~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 301 (363)
T 3ffh_A 227 YGLASARVGYGIA-DKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQA----FIGECRTSNANGIKQYEAFAKRFEKVKLY 301 (363)
T ss_dssp TCCSSCCCEEEEE-CHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHCTTCEEC
T ss_pred hcCchhceeeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHhhCCCceEC
Confidence 9999999999999 566666676666667789999999999998653 4778888899999999999999 699988
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
++.++ |+|++++. ...++...|. ++||.++||..|+. ++++||+++ +++++++++++|+++
T Consensus 302 ~~~~~-~~~~~~~~--------~~~~~~~~l~-~~gi~v~~g~~~~~--~~~iRis~~--~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 302 PANGN-FVLIDLGI--------EAGTIFSYLE-KNGYITRSGAALGF--PTAVRITIG--KEEDNSAVIALLEKL 362 (363)
T ss_dssp CCCSS-EEEEECSS--------CHHHHHHHHH-HTTEECEETTTTTC--TTEEEEECC--CHHHHHHHHHHHHHH
T ss_pred CCCCe-EEEEECCC--------CHHHHHHHHH-HCCeEEEeCccCCC--CCeEEEECC--CHHHHHHHHHHHHHh
Confidence 77665 89999874 1234666665 67999999998864 789999998 799999999999876
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=344.06 Aligned_cols=344 Identities=18% Similarity=0.263 Sum_probs=281.6
Q ss_pred hhhcCCCCCCCCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHc
Q 037587 23 AYENNPYDQLHNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIR 101 (464)
Q Consensus 23 ~~~~~~y~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~ 101 (464)
...-.+|.+.. +.++|+|+.|+|+++ ++.+.+++.+.... .....|++ .+..++|++++++++
T Consensus 18 ~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~-~~~~~l~~~la~~~g--- 81 (367)
T 3euc_A 18 VRAMGAYHVPD-SHGLVKLDAMENPYRLPPALRSELAARLGE-----------VALNRYPV-PSSEALRAKLKEVMQ--- 81 (367)
T ss_dssp HHHSCCSSCCC-CTTCEECCSSCCCCCCCHHHHHHHHHHHHH-----------HHTTCSCC-CCHHHHHHHHHHHHT---
T ss_pred HHhCCCCCCCC-CCCeeEccCCCCCCCCCHHHHHHHHHHhhh-----------hhhhcCCC-CcHHHHHHHHHHHhC---
Confidence 33445677765 568899999999985 46677766664221 13567876 478999999999986
Q ss_pred CCCCCC-CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHH
Q 037587 102 GNKVKF-DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180 (464)
Q Consensus 102 ~~~~~~-~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 180 (464)
+ ++++|++|+|+++++..++.+++++||+|+++.|+|.++...++.. |++++.+++++ +|.+|++.+++.+
T Consensus 82 -----~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~l 153 (367)
T 3euc_A 82 -----VPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFA-GLEFVGVPLRA--DFTLDRGAMLAAM 153 (367)
T ss_dssp -----CCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTT-TCEEEEEECCT--TSCCCHHHHHHHH
T ss_pred -----CCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEecCCC--CCCCCHHHHHHHh
Confidence 4 6789999999999999999999999999999999999998888876 99999999875 6789999999998
Q ss_pred HHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC--CeEEEEeccccccccCCCCCCccchhhhhhccCcCCC
Q 037587 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK--RIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDES 258 (464)
Q Consensus 181 ~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~--~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~ 258 (464)
++. ++++|++++||||||.++|.+++++|+++|+++ |+++|+||+|.++. .. .... ...
T Consensus 154 ~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~--~~--~~~~---~~~------- 214 (367)
T 3euc_A 154 AEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA--QE--SWMS---RLT------- 214 (367)
T ss_dssp HHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS--SC--CSGG---GGG-------
T ss_pred hcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc--cc--chHH---HHh-------
Confidence 753 688999999999999999999999999999999 99999999999753 22 1122 222
Q ss_pred CCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHH
Q 037587 259 DDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRK 338 (464)
Q Consensus 259 ~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 338 (464)
..++++++.||||. +++|+|+||+++ ++.+.+.+......++.+.+.|.++..++++. +++++.++.+++++
T Consensus 215 --~~~~~i~~~s~sK~-~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~ 286 (367)
T 3euc_A 215 --DFGNLLVMRTVSKL-GLAGIRLGYVAG-DPQWLEQLDKVRPPYNVNVLTEATALFALEHV----AVLDEQAAQLRAER 286 (367)
T ss_dssp --TCTTEEEEEECCCT-TSCSCCEEEEEE-CHHHHHHHGGGCCSSCCCHHHHHHHHHHHTTH----HHHHHHHHHHHHHH
T ss_pred --hCCCEEEEecchhh-cccccCceeeee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHH
Confidence 34789999999999 899999999999 55566666666666678999999999999873 34778888899999
Q ss_pred HHHHHHHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHH
Q 037587 339 EMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEET 417 (464)
Q Consensus 339 ~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~ 417 (464)
+.+.+.|+++ |+.+.++.+ +|+|++++. ..++...+ .++||.++||..|+...++++||+++ ++++
T Consensus 287 ~~l~~~l~~~~g~~~~~~~~-~~~~~~~~~---------~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~ 353 (367)
T 3euc_A 287 SRVAEGMAAHGGVTVFPSAA-NFLLARVPD---------AAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS--TPEE 353 (367)
T ss_dssp HHHHHHHHTSTTCEECCCSS-SEEEEECSC---------HHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC--CHHH
T ss_pred HHHHHHHHhCCCcEECCCCC-eEEEEECCC---------HHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC--CHHH
Confidence 9999999998 888766554 589999871 12455555 67899999999887666789999998 7999
Q ss_pred HHHHHHHHHHHHH
Q 037587 418 LQVALQRIKVFAQ 430 (464)
Q Consensus 418 l~~~l~~l~~~l~ 430 (464)
+++++++|+++++
T Consensus 354 i~~~~~~l~~~l~ 366 (367)
T 3euc_A 354 NAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998763
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=350.15 Aligned_cols=338 Identities=22% Similarity=0.385 Sum_probs=274.6
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.+.++++ ++.+.+++.+... .....|++..|..++|+++++++++.++ +++++++|+
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~ 93 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLK------------EGKTHYTDSRGILELREKISELYKDKYK--ADIIPDNII 93 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHSS--CCCCGGGEE
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHH------------cCccCCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 356799999998764 4666666655321 1235788878899999999999998766 456789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|++++|+|+++...+... |.+++.++ +|+++|++.+++ ++++|
T Consensus 94 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~--------~d~~~l~~~l~~------~~~~v 158 (370)
T 2z61_A 94 ITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFL-GAKPVFCD--------FTVESLEEALSD------KTKAI 158 (370)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEEC--------SSHHHHHHHCCS------SEEEE
T ss_pred ECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeC--------CCHHHHHHhccc------CceEE
Confidence 9999999999999999999999999999999998888876 99998887 578999887753 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++|+||||.+++.+ |+++|+++|+++|+||+|.++.+++. +.++..+.. ..+++++++||||
T Consensus 159 ~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~---------~~~~~i~~~s~sK 222 (370)
T 2z61_A 159 IINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK---CYSAIEFDE---------NLEKTILINGFSK 222 (370)
T ss_dssp EEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC---CCCGGGTCT---------TCSSEEEEEESTT
T ss_pred EEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC---CcCHHHccC---------CCCcEEEEecChh
Confidence 9999999999999977 88899999999999999998766543 234433311 3478999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSD-KKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
.+|++|+|+||+++++ .+.+.+..... .++++++.|.++.++++. . .+++++.++.++++++++.+.|+++|+
T Consensus 223 ~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~ 298 (370)
T 2z61_A 223 LYAMTGWRIGYVISND-EIIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKDFGW 298 (370)
T ss_dssp TTTCGGGCCEEEECCH-HHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCccceEEEEEECH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999955 55555544332 235788999998888875 2 456788888999999999999998899
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
++.++++|+|+|++++. +..+++..+++++||.+.||..|+...++++||+++ .+++++++++++|+++++
T Consensus 299 ~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~-~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 299 EVNNPIGAYYVFPNIGE--------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA-NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp BCCCCCBTTEECCBCSS--------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC-SCHHHHHHHHHHHHHHHC
T ss_pred eecCCCcceEEEEecCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-CCHHHHHHHHHHHHHHHh
Confidence 88888889999999874 123577777667899999999887544689999999 599999999999998874
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=353.19 Aligned_cols=342 Identities=23% Similarity=0.369 Sum_probs=276.0
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.+.++++ ++.+.+++.+.. .....|++..|..++|++++++++ +++++|++
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~~~~~~~l~~~la~~~~--------~~~~~v~~ 83 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRAL-------------GRQDQYAPPAGLPALREALAEEFA--------VEPESVVV 83 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHT-------------TTSCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHH-------------HHhcCCCCCCCCHHHHHHHHHhcC--------CChhhEEE
Confidence 35799999998774 466676666531 123468887789999999999975 67889999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC--CCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS--SSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
|+|+++++..++.+++++||+|++++|+|+.+...++.. |++++.++++ ++ ++.+|++++++.+.+ ++++
T Consensus 84 ~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~------~~~~ 155 (381)
T 1v2d_A 84 TSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLA-GAKARLVRLDLTPE-GFRLDLSALEKALTP------RTRA 155 (381)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETT-EEECCHHHHHTTCCT------TEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCCCCc-cCCcCHHHHHHhcCc------CCEE
Confidence 999999999999999999999999999999999888776 9999999986 32 478999999987743 7899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+ +. ...++..+ . .++++++.|+|
T Consensus 156 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~--~~~~~~~~-~----------~~~~~~~~s~s 221 (381)
T 1v2d_A 156 LLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GE--RPRRLREF-A----------PERTFTVGSAG 221 (381)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SS--CCCCHHHH-C----------TTTEEEEEEHH
T ss_pred EEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CC--CCCCHHHh-c----------CCCEEEEeech
Confidence 99999999999999999999999999999999999999998766 33 22344443 1 26889999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|.+|++|+|+||++++++ +.+.+.... ..++.+++.|.++..+++...+ .+++++.++.++++++++.+.|++.|+
T Consensus 222 K~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~ 299 (381)
T 1v2d_A 222 KRLEATGYRVGWIVGPKE-FMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGL 299 (381)
T ss_dssp HHTTCGGGCCEEEECCTT-THHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcCCcccceEEEEeCHH-HHHHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999654 444443332 2345788899888888875422 445778888999999999999999999
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC--NEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
++.++.+|+|+|++++.. + +..++.++||.++||..|+. ...+++||+++. +++++++++++|+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~ 367 (381)
T 1v2d_A 300 RVYVPEGTYFLMAELPGW----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRV 367 (381)
T ss_dssp CEECCSBSSEEEEECTTC----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred EecCCCcceEEEEecChH----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHH
Confidence 998888889999998742 1 34556788999999998874 246799999997 999999999999999
Q ss_pred HHhhCc
Q 037587 429 AQSCNP 434 (464)
Q Consensus 429 l~~~~~ 434 (464)
+++.+.
T Consensus 368 l~~~r~ 373 (381)
T 1v2d_A 368 VNSPRE 373 (381)
T ss_dssp C-----
T ss_pred Hhhccc
Confidence 877654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=360.61 Aligned_cols=353 Identities=17% Similarity=0.256 Sum_probs=277.4
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|++|.+.++ ++.+.+++.+..... ........|++..|..+||+++++++.+. +.+++++|+
T Consensus 55 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------~~~~~~~~y~~~~g~~~l~~~ia~~~~~~----~~~~~~~i~ 123 (432)
T 3ei9_A 55 DAQVISLGIGDTTEPIPEVITSAMAKKAHEL-------STIEGYSGYGAEQGAKPLRAAIAKTFYGG----LGIGDDDVF 123 (432)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHHHHHT-------TSTTTCCCCCCTTCCHHHHHHHHHHHHTT----TTCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhcc-------cccCCccCCCCCCCCHHHHHHHHHHHHcc----CCCCcceEE
Confidence 357899999988875 466777666643210 00023357888789999999999999742 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCC------------cEEEEEecCCCCCcccCHHHHHHHHH
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPG------------VEIVPIHCSSSNGFRITISALENAYQ 181 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~i~ 181 (464)
+|+|+++++..+ ..++++||.|++++|+|+++...+... | .+++.++++.++++..+++.
T Consensus 124 ~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 195 (432)
T 3ei9_A 124 VSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------ 195 (432)
T ss_dssp EESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEECCGGGTTSCCGGG------
T ss_pred ECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEeccCcccCCcCChhh------
Confidence 999999999975 778899999999999999988776654 5 36788887755556666443
Q ss_pred HHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCC
Q 037587 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261 (464)
Q Consensus 182 ~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (464)
.+++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ..++..+.. .
T Consensus 196 -----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~---~~~~~~~~~---------~ 258 (432)
T 3ei9_A 196 -----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN---PRSIFEIPG---------A 258 (432)
T ss_dssp -----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC---CSSGGGSTT---------G
T ss_pred -----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC---CCChhhcCC---------C
Confidence 13788999999999999999999999999999999999999999998766543 234333311 2
Q ss_pred CCcEEEEcCCCcCCCCCccEEEEEEecCHH-------HHHHHHHh--cccCCCChHHHHHHHHHcCCchhhHHHHHHHHH
Q 037587 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNER-------VVSAATKM--SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRK 332 (464)
Q Consensus 262 ~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~-------~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 332 (464)
.+++++++||||+||++|+|+||++++++. +...+... ..+++++++.|.++.+++.+.. .+++++.++
T Consensus 259 ~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~ 336 (432)
T 3ei9_A 259 EEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--LEAMHKVIG 336 (432)
T ss_dssp GGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH--HHHHHHHHH
T ss_pred CCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc--HHHHHHHHH
Confidence 368999999999999999999999997665 14444433 2344578899999999887543 356888899
Q ss_pred HHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec
Q 037587 333 RLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN 412 (464)
Q Consensus 333 ~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~ 412 (464)
.++++++++.+.|+++|+.+.++.+++|+|++++. . ...+++..+++++||.++||..|+..+.+++||+++.
T Consensus 337 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~ 409 (432)
T 3ei9_A 337 FYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPN-Q------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG 409 (432)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECSSSSEEEEECTT-S------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred HHHHHHHHHHHHHHHCCceecCCCcceEEEEECCC-C------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC
Confidence 99999999999999999999887778899999982 1 1235778888888999999999987678999999975
Q ss_pred CCHHHHHHHHHHHHHHHHhhC
Q 037587 413 ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 413 ~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+++++++++++|++--..++
T Consensus 410 -~~e~l~~~l~rl~~~~~~~~ 429 (432)
T 3ei9_A 410 -HRENILEACRRFKQLYKHHH 429 (432)
T ss_dssp -CHHHHHHHHHHHHHHHTTSC
T ss_pred -CHHHHHHHHHHHHHHhhhcc
Confidence 89999999999998665544
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=347.27 Aligned_cols=359 Identities=17% Similarity=0.288 Sum_probs=282.6
Q ss_pred ceEEeecccccc---cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 37 GIIQMGLAENQL---SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 37 ~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
++|||+.+.+.. +++.+.+++.+.... . ..... |++..|..++|+++|+++.+.+| +++++++|+
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~------~---~~~~~-y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~ 102 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEK------E---PKSVM-YTPANGIPELREELAAFLKKYDH--LEVSPENIV 102 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHH------C---GGGGS-CCCTTCCHHHHHHHHHHHHHHSC--CCCCGGGEE
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhh------c---ccccc-CCCCCCCHHHHHHHHHHHHHhcC--CCCCcceEE
Confidence 679998876432 566677766654221 0 01234 88888899999999999987665 446788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|+++.|+|.++...+... |++++.++.+++ .+|++.|++.++.....+.++++|
T Consensus 103 ~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v 178 (407)
T 2zc0_A 103 ITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQL-GAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLI 178 (407)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred EecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEE
Confidence 9999999999999999999999999999999998888766 999999998643 389999999887322122468887
Q ss_pred -EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 194 -LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 194 -il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+. ..+++++++|||
T Consensus 179 ~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~----------~~~~~i~~~s~s 246 (407)
T 2zc0_A 179 YTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG--DIVPLKALD----------NEGRVIVAGTLS 246 (407)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS--SCCCGGGGC----------SSCCEEEEEEST
T ss_pred EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC--CCCChhhcC----------CCCCEEEEcccc
Confidence 4789999999999999999999999999999999999998766544 334444431 225889999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhH-HHHHHHHHHHHHHHHHHHHHHHhC-
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTC-NYMKENRKRLRKRKEMLVSGLKVA- 348 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~- 348 (464)
|.+| +|+|+||++++ +.+.+.+...... +..+++.|.++..+++...+ . +++++.++.++++++.+.+.|++.
T Consensus 247 K~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (407)
T 2zc0_A 247 KVLG-TGFRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKRDIMLKALENHL 323 (407)
T ss_dssp TTTC-TTSCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred cccC-CCcceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999 99999999995 5565555544332 23678999999999987643 4 567788888999999999999874
Q ss_pred -CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHH
Q 037587 349 -GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETLQVALQRI 425 (464)
Q Consensus 349 -g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~l 425 (464)
++.+..+.+|+|+|++++.... ..+++..+++++||.+.||..|+.. .++++||+++..+++++++++++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l 397 (407)
T 2zc0_A 324 PNAEFTKPIAGMFVMFFLPEGAD------GISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKL 397 (407)
T ss_dssp TTSCBCCCSBSSEEEEECSTTCC------HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHH
T ss_pred CCCEEecCCCcEEEEEEcCCCCC------HHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 6777777888999999975221 2357777765559999999988653 467999999866789999999999
Q ss_pred HHHHHhh
Q 037587 426 KVFAQSC 432 (464)
Q Consensus 426 ~~~l~~~ 432 (464)
++++++.
T Consensus 398 ~~~l~~~ 404 (407)
T 2zc0_A 398 AKLYKEK 404 (407)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=357.34 Aligned_cols=354 Identities=16% Similarity=0.156 Sum_probs=268.3
Q ss_pred ceEEeeccccc---ccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 37 GIIQMGLAENQ---LSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 37 ~~i~l~~~~n~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
++|+|+.|+|+ +++ +.+.+++.+... . ........|++..|.++||++||++++ +++++|
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~----~----~~~~~~~~Y~~~~G~~~lr~~ia~~~~--------~~~~~i 96 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFR----T----KDGVDCRNYGGLLGIADIRELWAEALG--------LPADLV 96 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCCB----C----TTCCBTTSSCCSSCCHHHHHHHHHHHT--------CCGGGE
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHHh----h----ccchhhhCCCCCCCCHHHHHHHHHHhC--------CChhHE
Confidence 47999999986 443 233333322100 0 001235689999999999999999995 688999
Q ss_pred EEeCChHHHH--HHHHHHhcCC------------CCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHH
Q 037587 113 VLTAGSTAAN--ETLMFCLADP------------GDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALEN 178 (464)
Q Consensus 113 ~it~G~~~al--~~~~~~l~~~------------gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 178 (464)
++|+|+++++ .+++.++..+ +|+|++++|+|+.+...++.. |++++.++++++ .+|++.|++
T Consensus 97 ~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~ 172 (422)
T 3d6k_A 97 VAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF-GFEMINVPMTDE---GPDMGVVRE 172 (422)
T ss_dssp EECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH-TCEEEEEEEETT---EECHHHHHH
T ss_pred EEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHc-CCEEEecCCCCC---CCCHHHHHH
Confidence 9999999997 6777777655 347999999999999888877 999999998753 389999998
Q ss_pred HHHHHhhcCCceEEEE-EeCCCCCCCCCCCHHHHHHHHHHHh-hCCeEEEEeccccccccCCCCCCccchhhhhhccCcC
Q 037587 179 AYQQAQTLNLKVKGVL-ITNPSNPLGTAMTHQELNHLINFSK-SKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNID 256 (464)
Q Consensus 179 ~i~~~~~~~~~~~~vi-l~~P~NPtG~~~s~~~l~~i~~~~~-~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (464)
.+++ .++++|+ +++||||||.++|.+++++|+++|+ ++|+++|+||+|.++.|...+..+.++..+....
T Consensus 173 ~l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~--- 244 (422)
T 3d6k_A 173 LVKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA--- 244 (422)
T ss_dssp HHTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT---
T ss_pred HHhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc---
Confidence 8752 2688887 6899999999999999999999999 9999999999998643432211234544332110
Q ss_pred CCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCC-chhhHHHHHHHHHH
Q 037587 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSD-KKFTCNYMKENRKR 333 (464)
Q Consensus 257 ~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~ 333 (464)
+..+++++++||||+ +++|+|+||++++ +.+.+.+...... ++++.++|.++..++++ ..+ .+++++.++.
T Consensus 245 ---~~~~~~i~~~S~SK~-~~~GlriG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~ 318 (422)
T 3d6k_A 245 ---GNPNRFWFMSSTSKI-THAGSGVSFFASS-KENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGL-KAHMLKHAAS 318 (422)
T ss_dssp ---TCTTCEEEEEESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH-HHHHHHHHHH
T ss_pred ---CCCCcEEEEcChhhh-cCcccceEEEEeC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchH-HHHHHHHHHH
Confidence 134789999999999 6799999999995 4555555444322 45789999999999998 444 6788888999
Q ss_pred HHHHHHHHHHHHHh----CC-CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCC-CCCCC---CCCC
Q 037587 334 LRKRKEMLVSGLKV----AG-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPG-SSCHC---NEPG 404 (464)
Q Consensus 334 ~~~~~~~l~~~l~~----~g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg-~~f~~---~~~~ 404 (464)
++++++.+.+.|.+ .| +.+..+++|+|+|++++.. + ..++ ..++.++||.|+|| ..|.. ...+
T Consensus 319 ~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~----~---~~~~-~~~l~~~gV~v~~~g~~f~~~~~~~~~ 390 (422)
T 3d6k_A 319 LAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG----T---ASRV-VELAKEAGIALTGAGSSFPLHNDPNNE 390 (422)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT----C---HHHH-HHHHHHTTEECCCTTTTSGGGCCTTSC
T ss_pred HHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC----C---HHHH-HHHHHHCCeEEEcCccccCCCCCCCCC
Confidence 99999988888865 33 6767788899999999752 1 1234 44567889999994 44631 1367
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 405 WFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 405 ~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
++||+++..+++++++++++|++++++.
T Consensus 391 ~iRis~~~~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 391 NIRLAPSLPPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999998568999999999999998764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=356.25 Aligned_cols=346 Identities=16% Similarity=0.213 Sum_probs=271.5
Q ss_pred CceEEeeccc---cccc---HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 36 SGIIQMGLAE---NQLS---FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 36 ~~~i~l~~~~---n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
.++|+|+.+. +..+ ++.+.+++.+.... .....|++..|.+++|+++++++....+ ..+++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~ 115 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA-----------GLPRGYLPIDGIAAYDASVQKLLLGDDS--PLIAA 115 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc-----------CCCCCCCCCCCcHHHHHHHHHHhcCCCc--ccccc
Confidence 4789999993 3332 26677766654211 2345798889999999999999974322 12367
Q ss_pred C--cEEEeCChHHHHHHH--HHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 110 N--KLVLTAGSTAANETL--MFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 110 ~--~i~it~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
+ +|++|+|+++++..+ +.+++++||+|++++|+|.++...+... |.+++.+++..++++.+|++.+++.+++
T Consensus 116 ~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~--- 191 (420)
T 4f4e_A 116 GRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMA-GFEVVAYPYYDAKTNGVNFDGMLAALNG--- 191 (420)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHT-TCCEEEEECEETTTTEECHHHHHHHHTT---
T ss_pred CceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEeeeeccccCccCHHHHHHHHHh---
Confidence 7 899999999999999 4466899999999999999998888877 9999999984345688999999998863
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
..++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++... ...++..+.. ..+++
T Consensus 192 ~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~-~~~~~~~~~~---------~~~~~ 261 (420)
T 4f4e_A 192 YEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEA-DAAAVRLFAA---------ANLNV 261 (420)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTG-GGHHHHHHHH---------TTCCE
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcch-hhHHHHHHHh---------cCCCE
Confidence 1236788999999999999999999999999999999999999999998776420 2344444433 34789
Q ss_pred EEEcCCCcCCCCCccEEEEEEe--cCHHHHHH----HHHh--cccCCCChHHHHHHHHHcCCchhh---HHHHHHHHHHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYS--NNERVVSA----ATKM--SSFGLVSSQTQYLLSRMLSDKKFT---CNYMKENRKRL 334 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~--~~~~~~~~----~~~~--~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~ 334 (464)
++++||||.||++|+|+||+++ +++.+... ++.. ..+..++.+.|.++..++.+..+. .+++++.++.+
T Consensus 262 i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 341 (420)
T 4f4e_A 262 FVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRI 341 (420)
T ss_dssp EEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864 34443322 2221 233456789999999999886531 56688899999
Q ss_pred HHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe
Q 037587 335 RKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF 410 (464)
Q Consensus 335 ~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~ 410 (464)
+++++.+.+.|+++ |+.+..+++|+|+|++++. +.+..+++++||.+.|+ .||++
T Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gI~v~~~----------~Ris~ 400 (420)
T 4f4e_A 342 RAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTS-----------AQVDRLREEFGIYAVST----------GRICV 400 (420)
T ss_dssp HHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------SEEEG
T ss_pred HHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEE
Confidence 99999999999987 7788888999999988752 24566677889999975 29999
Q ss_pred ecCCHHHHHHHHHHHHHHH
Q 037587 411 ANITEETLQVALQRIKVFA 429 (464)
Q Consensus 411 ~~~~~e~l~~~l~~l~~~l 429 (464)
+..+++++++++++|++++
T Consensus 401 ~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 401 AALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp GGCCTTTHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHh
Confidence 8768888999999999876
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=347.84 Aligned_cols=351 Identities=17% Similarity=0.296 Sum_probs=278.2
Q ss_pred CceEEeecccccc---cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 36 SGIIQMGLAENQL---SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 36 ~~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
.++|+|+.+.... +++.+.+++.+..... ......|++..|..++|++++++++ +++++|
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~~y~~~~~~~~l~~~la~~~g--------~~~~~v 94 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREK---------GEVALQYSPTEGYAPLRAFVAEWIG--------VRPEEV 94 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHH---------HHHHTSCCCTTCCHHHHHHHHHHHT--------SCGGGE
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhc---------chhhhCCCCCCCCHHHHHHHHHHhC--------CChhhE
Confidence 4679998765322 5666777766543210 0124578887789999999999995 578899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.+++++||+|+++.|+|+++...+... |++++.++.+++ .+|+++|++.+++ .++++
T Consensus 95 ~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~---~~d~~~l~~~l~~-----~~~~~ 165 (397)
T 2zyj_A 95 LITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQ-GPRFLTVPAGEE---GPDLDALEEVLKR-----ERPRF 165 (397)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHH-----CCCSC
T ss_pred EEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEecCcCCC---CCCHHHHHHHHhh-----cCCeE
Confidence 99999999999999999999999999999999998888876 999999998643 3899999998874 25777
Q ss_pred E-EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 193 V-LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 193 v-il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
| ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+..+. ..+++++++|+
T Consensus 166 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~-------~~~~~i~~~s~ 236 (397)
T 2zyj_A 166 LYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA--RLPSLFELAREA-------GYPGVIYLGSF 236 (397)
T ss_dssp EEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC--CCCCHHHHHHHH-------TCCCEEEEEES
T ss_pred EEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC--CCCchhhhCccc-------CCCeEEEEecc
Confidence 7 5789999999999999999999999999999999999998776554 334555442210 01578999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA- 348 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 348 (464)
||.+| +|+|+||++++ +.+.+.+..... .++++++.|.++..++++..+ +++++.++.++++++.+.+.|++.
T Consensus 237 sK~~~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~ 312 (397)
T 2zyj_A 237 SKVLS-PGLRVAFAVAH-PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKAQAMLHALDREV 312 (397)
T ss_dssp TTTTC-GGGCCEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH--HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccc-ccceeEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999 99999999995 555555543322 234688999999999987643 568888899999999999999885
Q ss_pred --CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHH
Q 037587 349 --GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETLQVALQR 424 (464)
Q Consensus 349 --g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~ 424 (464)
|+.+..+.+|+|+|++++.... ..+++..++ ++||.+.||..|+.. .++++||+++..+++++++++++
T Consensus 313 ~~g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~ 385 (397)
T 2zyj_A 313 PKEVRYTRPKGGMFVWMELPKGLS------AEGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRR 385 (397)
T ss_dssp CTTSEECCCSBSSEEEEECSTTCC------HHHHHHHHH-HTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHH
T ss_pred CCCeEEccCCccEEEEEEcCCCCC------HHHHHHHHH-HCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHH
Confidence 7888777888999999975221 235777776 459999999988643 46799999987679999999999
Q ss_pred HHHHHHhh
Q 037587 425 IKVFAQSC 432 (464)
Q Consensus 425 l~~~l~~~ 432 (464)
|++++++.
T Consensus 386 l~~~l~~~ 393 (397)
T 2zyj_A 386 LGRALKGL 393 (397)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-43 Score=351.07 Aligned_cols=351 Identities=21% Similarity=0.341 Sum_probs=282.7
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.+.+.++ ++.+.+++ +... .....|++..|..++|+++++++++.++ +++++++|+
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~ 106 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENK------------PEVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVL 106 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTC------------CSSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEE
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 357899999998764 45566665 4311 1235788878899999999999997665 446788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||+|+++.|+|+++...+... |++++.++.+++++|.+ ++.|++.+++ ++++|
T Consensus 107 ~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v 178 (409)
T 2gb3_A 107 VTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA-GVKLIPVTRRMEEGFAI-PQNLESFINE------RTKGI 178 (409)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH-TCEEEEEECCGGGTSCC-CTTGGGGCCT------TEEEE
T ss_pred EeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeccCCCCCCcc-HHHHHHhhCc------CCeEE
Confidence 9999999999999999999999999999999998888776 99999999875445665 7888877643 78999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. +.+. +.+ ..+++++++||||
T Consensus 179 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~---~~~~---~~~--------~~~~~i~~~s~sK 244 (409)
T 2gb3_A 179 VLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE---FASA---LSI--------ESDKVVVIDSVSK 244 (409)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCG---GGS--------CCTTEEEEEESTT
T ss_pred EECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC---CCCc---ccc--------CCCCEEEEecchh
Confidence 9999999999999999999999999999999999999998766443 1232 111 1267899999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 352 (464)
.+|++|+|+||++++++.+.+.+......+ +++.+.|.++.++++.. .+++++.++.++++++.+.+.|+++|+++
T Consensus 245 ~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 321 (409)
T 2gb3_A 245 KFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKR 321 (409)
T ss_dssp TTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCCccceEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 999999999999997735555555444333 67889999999998753 45678888889999999999999888888
Q ss_pred -ecCCccEEEEEecCcccccCChhHHHHHHHHHHHh-----cCeEEeCCCCCCC---CCCCeEEEEeecCCHHHHHHHHH
Q 037587 353 -LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFE-----VGLNISPGSSCHC---NEPGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 353 -~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~-----~gI~v~pg~~f~~---~~~~~~Ris~~~~~~e~l~~~l~ 423 (464)
..+.+|+|+|++++ .. +..+++..++++ +||.+.||..|+. ..++++||+++ .++++++++++
T Consensus 322 ~~~~~~~~~~~~~~~-~~------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~-~~~e~i~~~~~ 393 (409)
T 2gb3_A 322 FTKPSGAFYITAELP-VE------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAID 393 (409)
T ss_dssp BCCCSBSSEEEEECS-SS------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHH
T ss_pred eeCCCeeEEEEEEeC-CC------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-CCHHHHHHHHH
Confidence 77888999999987 11 123577777655 5999999988864 23679999999 69999999999
Q ss_pred HHHHHHHhhC
Q 037587 424 RIKVFAQSCN 433 (464)
Q Consensus 424 ~l~~~l~~~~ 433 (464)
+|++++++.+
T Consensus 394 ~l~~~l~~~~ 403 (409)
T 2gb3_A 394 VLMEGLKMFC 403 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=342.15 Aligned_cols=335 Identities=16% Similarity=0.227 Sum_probs=265.4
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|||+.++|+++ ++.+.+++.+.. .....|++. |..++|+++|++++ +++++|+
T Consensus 23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~~-~~~~l~~~la~~~~--------~~~~~v~ 80 (364)
T 1lc5_A 23 PDQLLDFSANINPLGMPVSVKRALIDNL-------------DCIERYPDA-DYFHLHQALARHHQ--------VPASWIL 80 (364)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTG-------------GGGGSCCCT-TCHHHHHHHHHHHT--------SCGGGEE
T ss_pred ccceEEeccccCCCCCCHHHHHHHHHHH-------------HHhhcCCCC-CHHHHHHHHHHHHC--------cCHHHEE
Confidence 456899999998774 466667666541 234678764 78999999999985 6788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.++ +||+|+++.|+|+++...+... |.+++.++.++++++.+ ++.+.+.+ .+++++|
T Consensus 81 ~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~-l~~~~~~~------~~~~~~v 150 (364)
T 1lc5_A 81 AGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQS-GCEIRRWSLREADGWQL-TDAILEAL------TPDLDCL 150 (364)
T ss_dssp EESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCC-CTTHHHHC------CTTCCEE
T ss_pred ECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHHHc-CCeEEEEeCCcccccch-hHHHHHhc------cCCCCEE
Confidence 9999999999999998 7899999999999998888877 99999999875345544 45444433 2367889
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. +...+.. ..+++++++||||
T Consensus 151 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-----~~~~~~~---------~~~~~i~~~s~sK 216 (364)
T 1lc5_A 151 FLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET-----GFIPALK---------DNPHIWVLRSLTK 216 (364)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC-----CSGGGCT---------TCTTEEEEEESTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc-----chhhHhc---------cCCCEEEEEECch
Confidence 9999999999999999999999999999999999999998655422 2222222 3368899999999
Q ss_pred CCCCCccEEEEEE-ecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 037587 274 DFSMPGFRVGMIY-SNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 351 (464)
.+|++|+|+||++ + ++.+.+.+......+++++++|.++.+++++.+ ++++.++.++++++.+.+.|+++ |+.
T Consensus 217 ~~~~~G~r~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~ 291 (364)
T 1lc5_A 217 FYAIPGLRLGYLVNS-DDAAMARMRRQQMPWSVNALAALAGEVALQDSA----WQQATWHWLREEGARFYQALCQLPLLT 291 (364)
T ss_dssp TTTCTTTCCEEEECC-CHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHH----HHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred hhcCCccceEEEEEC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 9999999999999 7 555666666655566788999999999998743 57788888999999999999988 888
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++.+ +|+|++++.. .. +++..++ ++||.++||..|+...++++||+++ +++++++++++|++++++
T Consensus 292 ~~~~~g-~~~~~~~~~~--~~------~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 292 VYPGRA-NYLLLRCERE--DI------DLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp ECCCSS-SEEEEEESCT--TC------CHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC--
T ss_pred ECCCCC-eEEEEECCCc--HH------HHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHhhc
Confidence 876655 5888888742 11 3666665 6799999999887555789999997 588899999999988765
Q ss_pred h
Q 037587 432 C 432 (464)
Q Consensus 432 ~ 432 (464)
.
T Consensus 360 ~ 360 (364)
T 1lc5_A 360 I 360 (364)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=354.61 Aligned_cols=347 Identities=14% Similarity=0.175 Sum_probs=268.2
Q ss_pred CceEEeecccc--cccH----HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 36 SGIIQMGLAEN--QLSF----DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 36 ~~~i~l~~~~n--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
+++|+|+.+.. ..++ +.+.+++...... .....|++..|.+++|+++++++++.++ ..+++
T Consensus 28 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~ 94 (401)
T 7aat_A 28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK-----------KMDKEYLPIAGLADFTRASAELALGENS--EAFKS 94 (401)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceeeeeeeEECCCCCEechHHHHHHHHHhccc-----------ccccCCCCCCCCHHHHHHHHHHhcCCCc--ccccc
Confidence 35799999874 2222 3455555443110 2356798888999999999999986544 33568
Q ss_pred CcEEE--eCChHHHHHHHHHHhc---CCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 110 NKLVL--TAGSTAANETLMFCLA---DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 110 ~~i~i--t~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
++|++ |+|+++++.+++.++. ++||.|++++|+|..+...++.. |.+++.++++..+++.+|++.+++.+++
T Consensus 95 ~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~-- 171 (401)
T 7aat_A 95 GRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-GLQLQAYRYYDPKTCSLDFTGAMEDISK-- 171 (401)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTT--
T ss_pred CceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-CCeeEeeeeeccccCccCHHHHHHHHHh--
Confidence 99977 9999999998887664 89999999999999999988877 9999999986555788999988888764
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
..++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.+....++..+.. ..++
T Consensus 172 -~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~---------~~~~ 241 (401)
T 7aat_A 172 -IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE---------QGID 241 (401)
T ss_dssp -SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH---------TTCC
T ss_pred -CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh---------cCCc
Confidence 234788999999999999999999999999999999999999999998766532001123333322 3478
Q ss_pred EEEEcCCCcCCCCCccEEEEEEe--cCHH----HHHHHHHhc--ccCCCChHHHHHHHHHcCCchhh---HHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYS--NNER----VVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFT---CNYMKENRKR 333 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~--~~~~----~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~ 333 (464)
+++++||||+||++|+|+||+++ .++. +...+.... ...+++.+.|.++..++.++.+. .+++++.++.
T Consensus 242 ~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (401)
T 7aat_A 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR 321 (401)
T ss_dssp CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 2333 223333221 22346678888888888876442 4557788899
Q ss_pred HHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 037587 334 LRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC 409 (464)
Q Consensus 334 ~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris 409 (464)
++++++++.+.|.++| +.+.++++|+|+|++++. +++..+++++||.+.|+ +||+
T Consensus 322 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gi~v~~~----------~Ris 380 (401)
T 7aat_A 322 IISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRIS 380 (401)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCCH-----------HHHHHHHHhCCEeccCC----------CeEE
Confidence 9999999999999885 677788999999987752 35577778889999754 6999
Q ss_pred eecCCHHHHHHHHHHHHHHH
Q 037587 410 FANITEETLQVALQRIKVFA 429 (464)
Q Consensus 410 ~~~~~~e~l~~~l~~l~~~l 429 (464)
++..+++++++++++|++++
T Consensus 381 ~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 381 VAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp GGGCCTTTHHHHHHHHHHHH
T ss_pred eccCChhhHHHHHHHHHHHh
Confidence 98767777999999999875
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=352.87 Aligned_cols=350 Identities=19% Similarity=0.275 Sum_probs=265.8
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+.+++.++ ++.+.+++.+..... . .......|++..|..+||+++|+++. +| + +++++|+
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----~--~~~~~~~y~~~~g~~~lr~~la~~l~--~g--~-~~~~~v~ 99 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARL-----S--SPTTCRGYGPDFGLPALRQKLSEDFY--RG--F-VDAKEIF 99 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHH-----T--SSSCCCCCCCTTCCHHHHHHHHHTTS--TT--S-SCGGGEE
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhcc-----c--ccccccCCCCCCCCHHHHHHHHHHHH--cC--C-CCHHHEE
Confidence 457899999988764 466666666542210 0 00124568777789999999999963 22 3 5788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcE-EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVE-IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++..++. ++.+||+|+++.|+|+++...+... |.+ ++.+++++++++..+++.+ +++++
T Consensus 100 ~~~G~~~al~~~~~-~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~ 166 (400)
T 3asa_A 100 ISDGAKVDLFRLLS-FFGPNQTVAIQDPSYPAYLDIARLT-GAKEIIALPCLQENAFFPEFPED-----------THIDI 166 (400)
T ss_dssp EESCHHHHHHHHHH-HHCSSCEEEEEESCCHHHHHHHHHT-TCSEEEEEECCGGGTTCCCCCTT-----------CCCSE
T ss_pred EccChHHHHHHHHH-HcCCCCEEEECCCCcHHHHHHHHHc-CCcceEecccchhcCcccChhhc-----------cCccE
Confidence 99999999999765 4589999999999999998888776 998 9999987555555554321 27889
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. ...++..+.. ..+++++++|||
T Consensus 167 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~s~s 235 (400)
T 3asa_A 167 LCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS--LPKSIFEIPD---------ARFCAIEINSFS 235 (400)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT--SCSSGGGSTT---------GGGTEEEEEECC
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC--CCCchhhCCC---------CCCceEEEecch
Confidence 99999999999999999999999999999999999999998655432 2233333310 125789999999
Q ss_pred cCCCCCccEEEEEEecCHH-------HHHHHHH--hcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 273 KDFSMPGFRVGMIYSNNER-------VVSAATK--MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~-------~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
|+||++|+|+||++++++. +...... ...+++++.+.|.++..++++. + +++.++.++++++++.+
T Consensus 236 K~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~----~~~~~~~~~~~~~~l~~ 310 (400)
T 3asa_A 236 KPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-P----QLEAIHYYRENSDLLRK 310 (400)
T ss_dssp GGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-T----TCHHHHHHHHHHHHHHH
T ss_pred hhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-H----HHHHHHHHHHHHHHHHH
Confidence 9999999999999997655 3333322 2234468899999998888754 2 56677888889999999
Q ss_pred HHHhCCCeeecCCccEEEEEe-cCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHH
Q 037587 344 GLKVAGIRCLKSNAGLFCWVD-MRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVAL 422 (464)
Q Consensus 344 ~l~~~g~~~~~~~~g~f~~~~-l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 422 (464)
.|++.|+++.++.+|+|+|++ ++...... +++..+++++||.+.||..|+...++++||++. .+++++++++
T Consensus 311 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~-~~~e~i~~~l 383 (400)
T 3asa_A 311 ALLATGFEVFGGEHAPYLWVKPTQANISDR------DLFDFFLREYHIAITPGIGFGRSGSGFVRFSSL-GKREDILAAC 383 (400)
T ss_dssp HHHHTTCEEEECSSSSEEEEECCCTTCCTT------THHHHHHHHHSEECEEGGGGCGGGTTCEEEECC-SCHHHHHHHH
T ss_pred HHHHCCCeeeCCCCceEEEEeccCCCCCHH------HHHHHHHHhCCEEEeChhHhCCCCCCEEEEEee-CCHHHHHHHH
Confidence 999889998888778899999 77432222 367777777799999999887555789999964 4899999999
Q ss_pred HHHHHHHHhh
Q 037587 423 QRIKVFAQSC 432 (464)
Q Consensus 423 ~~l~~~l~~~ 432 (464)
++|++++++.
T Consensus 384 ~~l~~~~~~~ 393 (400)
T 3asa_A 384 ERLQMAPALQ 393 (400)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHhh
Confidence 9999988654
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=351.12 Aligned_cols=325 Identities=16% Similarity=0.156 Sum_probs=260.7
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHH--HHHHHHhcC--C----------CCeEEEcCC
Q 037587 76 ELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAAN--ETLMFCLAD--P----------GDAFLLPTP 141 (464)
Q Consensus 76 ~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al--~~~~~~l~~--~----------gd~Vlv~~p 141 (464)
....|++..|.++||++||++++ +++++|++|+|+++++ .+++.+++. + ||+|++++|
T Consensus 70 ~~~~Y~~~~g~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p 141 (427)
T 3ppl_A 70 DVRNYGGLDGIVDIRQIWADLLG--------VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVP 141 (427)
T ss_dssp BTTSSCCSSCCHHHHHHHHHHHT--------SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEES
T ss_pred hhcCCCCCCCcHHHHHHHHHHhC--------CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCC
Confidence 45789998899999999999995 7889999999999999 588888876 6 899999999
Q ss_pred CCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEe-CCCCCCCCCCCHHHHHHHHHHH-h
Q 037587 142 YYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT-NPSNPLGTAMTHQELNHLINFS-K 219 (464)
Q Consensus 142 ~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~-~P~NPtG~~~s~~~l~~i~~~~-~ 219 (464)
+|..+...++.. |++++.+|++++ .+|++.|+++++. +++++|+++ +||||||.++|.+++++|+++| +
T Consensus 142 ~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~ 212 (427)
T 3ppl_A 142 GYDRHFSITERF-GFEMISVPMNED---GPDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETA 212 (427)
T ss_dssp CCHHHHHHHHHT-TCEEEEEEEETT---EECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCS
T ss_pred CcHHHHHHHHHc-CCEEEEeCCCCC---CCCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhh
Confidence 999999988877 999999998753 3899999988731 378888755 7899999999999999999999 9
Q ss_pred hCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh
Q 037587 220 SKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM 299 (464)
Q Consensus 220 ~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~ 299 (464)
++|++||+||+|.++.|.+.+....++..+.... +..+++++++||||+ +++|+|+||++++ +.+.+.+...
T Consensus 213 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~S~SK~-~~~G~r~G~~~~~-~~l~~~~~~~ 284 (427)
T 3ppl_A 213 APDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAA------GNPNRFWAFTSTSKI-TLAGAGVSFFLTS-AENRKWYTGH 284 (427)
T ss_dssp STTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT------TCTTSEEEEEESTTT-SCTTSSCEEEECC-HHHHHHHHHH
T ss_pred cCCCEEEEECCCcccccCCCCCCccchhhhhhcc------CCCCcEEEEechhhc-cCcCccEEEEEcC-HHHHHHHHHH
Confidence 9999999999999877765422233555442110 134789999999999 5799999999995 4455555443
Q ss_pred c--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeeecCCccEEEEEecCcccccC
Q 037587 300 S--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-----GIRCLKSNAGLFCWVDMRHLLVSN 372 (464)
Q Consensus 300 ~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----g~~~~~~~~g~f~~~~l~~~~~~~ 372 (464)
. ..+.++++.|.++..++.+...+.+++++.++.++++++.+.+.|.+. ++.+..+++|+|+|++++..
T Consensus 285 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---- 360 (427)
T 3ppl_A 285 AGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG---- 360 (427)
T ss_dssp HHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT----
T ss_pred hhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc----
Confidence 3 234578899999999999843337788889999999999998888652 47777888999999999853
Q ss_pred ChhHHHHHHHHHHHhcCeEEeC-CCCCCC---CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 373 TFEAEKELWKKIIFEVGLNISP-GSSCHC---NEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~p-g~~f~~---~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
...++... +.++||.++| |..|+. ..++++||+++..+++++++++++|++++++..
T Consensus 361 ---~~~~~~~~-l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 361 ---TASRVAEL-AKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp ---CHHHHHHH-HHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHH-HHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12245544 5678999999 444542 246899999987789999999999999987654
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=348.57 Aligned_cols=346 Identities=15% Similarity=0.185 Sum_probs=269.9
Q ss_pred CCceEEeeccc---cccc-H--HHHHHHHHh-hhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 35 PSGIIQMGLAE---NQLS-F--DLLESWLAS-NQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 35 ~~~~i~l~~~~---n~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
..++|+|+.+. +..+ + +.+.+++.+ .... .....|++..|..++|+++++++....+ ..+
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~ 91 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP-----------HGASLYLPMEGLNCYRHAIAPLLFGADH--PVL 91 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHH
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc-----------cccccCCCCCchHHHHHHHHHHHhcCCc--ccc
Confidence 35789999994 3332 2 566666555 3210 1345798888999999999999975322 123
Q ss_pred CCC--cEEEeCChHHHHHHHH--HHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHH
Q 037587 108 DPN--KLVLTAGSTAANETLM--FCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQA 183 (464)
Q Consensus 108 ~~~--~i~it~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 183 (464)
+++ +|++|+|+++++..++ .+++++||+|+++.|+|..+...++.. |.+++.+++..++++.+|++.+++.+++
T Consensus 92 ~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~- 169 (397)
T 3fsl_A 92 KQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA-GFEVSTYPWYDEATNGVRFNDLLATLKT- 169 (397)
T ss_dssp HTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHT-TCCEEEECCEETTTTEECHHHHHHHHTT-
T ss_pred cccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHc-CCceEEEeeeeccCCcCcHHHHHHHHHh-
Confidence 678 8999999999999995 456799999999999999998888877 9999999984445788999999998863
Q ss_pred hhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCC
Q 037587 184 QTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS 263 (464)
Q Consensus 184 ~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (464)
..++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++... ...++..+.. ..+
T Consensus 170 --~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~---------~~~ 237 (397)
T 3fsl_A 170 --LQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEE-DAYAIRAIAS---------AGL 237 (397)
T ss_dssp --CCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTG-GGHHHHHHHH---------TTC
T ss_pred --CCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCccc-ccHHHHHHHh---------cCC
Confidence 1236788899999999999999999999999999999999999999987765310 2344444433 347
Q ss_pred cEEEEcCCCcCCCCCccEEEEEEe--cCHHHHH-HHHHh-----cccCCCChHHHHHHHHHcCCchhh---HHHHHHHHH
Q 037587 264 RIHIVYSLSKDFSMPGFRVGMIYS--NNERVVS-AATKM-----SSFGLVSSQTQYLLSRMLSDKKFT---CNYMKENRK 332 (464)
Q Consensus 264 ~vi~l~S~SK~~g~~GlRiG~l~~--~~~~~~~-~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~ 332 (464)
++++++||||+||++|+|+||+++ .+..+.. ..... ..+..++.+.|.++..++.+..+. .+++++.++
T Consensus 238 ~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 317 (397)
T 3fsl_A 238 PALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRT 317 (397)
T ss_dssp CEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999975 3444332 22222 234446789999999999886431 456788899
Q ss_pred HHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 037587 333 RLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRI 408 (464)
Q Consensus 333 ~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ri 408 (464)
.++++++.+.+.|+++ |+.+.++++|+|+|++++. +.+..+++++||.+.||. ||
T Consensus 318 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~----------Ri 376 (397)
T 3fsl_A 318 RILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RM 376 (397)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTC----------EE
T ss_pred HHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCCH-----------HHHHHHHHhCCEEECCCC----------eE
Confidence 9999999999999987 6888888899999988752 245666778999999873 99
Q ss_pred EeecCCHHHHHHHHHHHHHH
Q 037587 409 CFANITEETLQVALQRIKVF 428 (464)
Q Consensus 409 s~~~~~~e~l~~~l~~l~~~ 428 (464)
+++..+++++++++++|+++
T Consensus 377 s~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 377 CVAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp EGGGCCTTTHHHHHHHHHHH
T ss_pred EEEecCHhhHHHHHHHHHhh
Confidence 99876788899999999875
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=334.39 Aligned_cols=323 Identities=16% Similarity=0.250 Sum_probs=255.8
Q ss_pred CCCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 32 LHNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 32 ~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
...+.++|+|+.|+|+++ ++.+.+++.+. ......|++ .|..+||+++|++++ ++++
T Consensus 12 ~~~~~~~i~l~~n~~~~~~~~~v~~a~~~~-------------~~~~~~y~~-~~~~~lr~~la~~~~--------~~~~ 69 (337)
T 3p1t_A 12 VRAAAQAVCLAFNENPEAVEPRVQAAIAAA-------------AARINRYPF-DAEPRVMRKLAEHFS--------CPED 69 (337)
T ss_dssp --CCCCCEECSSCCCCSCCCHHHHHHHHHH-------------GGGTTSCCT-THHHHHHHHHHHHHT--------SCGG
T ss_pred ccCCCCceEeeCCCCCCCCCHHHHHHHHHh-------------hhhhccCCC-CchHHHHHHHHHHhC--------cCHH
Confidence 345667899999999986 46777777664 234567864 578999999999986 6788
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|++|+|+++++.+++.++ +||+|+++.|+|..+...++.. |++++.+++++ +|.+|++.+++. .++
T Consensus 70 ~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~--------~~~ 136 (337)
T 3p1t_A 70 NLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVS-GLRHFEIGLTD--DLLLDPNDLAQV--------SRD 136 (337)
T ss_dssp GEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHTTS-CCEEEEECBCT--TSSBCHHHHTTC--------CTT
T ss_pred HEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHhh--------cCC
Confidence 9999999999999999988 9999999999999999888877 99999999863 578999998764 267
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
+++++++||||||.++|.+++.++++ +++. +|+||+|.++.+... .. . . ..+++++++|
T Consensus 137 ~~v~i~~p~nptG~~~~~~~l~~l~~---~~~~-~ivDea~~~~~~~~~----~~---~-~---------~~~~~i~~~S 195 (337)
T 3p1t_A 137 DCVVLANPSNPTGQALSAGELDQLRQ---RAGK-LLIDETYVDYSSFRA----RG---L-A---------YGENELVFRS 195 (337)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHH---HCSE-EEEECTTGGGSSCSS----SC---C-C---------CBTTEEEEEE
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHH---hCCc-EEEECCChhhccccc----cc---c-c---------cCCCEEEEee
Confidence 89999999999999999888777665 5666 566999997433222 11 0 1 2368899999
Q ss_pred CCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 037587 271 LSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI 350 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 350 (464)
|||.||++|+|+||++++ +.+.+.+......++++.+.|.++..++++.++ +.+.++.+.++++.+.+.|+++|+
T Consensus 196 ~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~ 270 (337)
T 3p1t_A 196 FSKSYGLAGLRLGALFGP-SELIAAMKRKQWFCNVGTLDLHALEAALDNDRA----REAHIAKTLAQRRRVADALRGLGY 270 (337)
T ss_dssp SSSTTCCTTTCCEEEECC-HHHHHHHHTTSCTTCSCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhccCcchheEEEEeC-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999994 456666666666667888999999999987543 344555566778889999999999
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.+.+++++ |+|+..+.. .++ ..++.++||.++||..|+. ++++||+++ ++++++.++++|+++++
T Consensus 271 ~~~~~~~~-~~~~~~~~~---------~~~-~~~l~~~gi~v~~g~~~~~--~~~iRis~~--~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 271 RVASSEAN-FVLVENAAG---------ERT-LRFLRERGIQVKDAGQFGL--HHHIRISIG--REEDNDRLLAALAEYSD 335 (337)
T ss_dssp CBCCCSSS-EEEEECTTT---------HHH-HHHHHHTTEECEEGGGGTC--CSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred EECCCCCe-EEEEEcCCH---------HHH-HHHHHHCCeEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence 98888877 667776531 123 3455678999999998864 689999998 68999999999988753
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=335.80 Aligned_cols=334 Identities=18% Similarity=0.310 Sum_probs=269.1
Q ss_pred CCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 34 NPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
++.++|||+.|+|+++ ++.+.+++.+.. .....|+. .+..++|++++++++ +++++|
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~i 81 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGI-------------KNLGVYPD-VNYRRLNKSIENYLK--------LKDIGI 81 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHH-------------HGGGSCCC-TTCHHHHHHHHHHHT--------CCSCEE
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHH-------------HHhcCCCC-ccHHHHHHHHHHHhC--------CCcceE
Confidence 4667899999999985 466666665531 23457765 578999999999995 678999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
++|+|+++++..++.++ |+|+++.|+|.++...+... |++++.++++++++ ++++++++.++ ++++
T Consensus 82 ~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~--~~~~~l~~~l~-------~~~~ 147 (361)
T 3ftb_A 82 VLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKH-GVSVVFSYLDENMC--IDYEDIISKID-------DVDS 147 (361)
T ss_dssp EEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHHHT-TCEEEEEECCTTSC--CCHHHHHHHTT-------TCSE
T ss_pred EEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHHHc-CCeEEEeecCcccC--CCHHHHHHhcc-------CCCE
Confidence 99999999999999887 89999999999999888877 99999999886544 56688887764 2788
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.++ . . .+...... ..+++++++|+|
T Consensus 148 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~--~-~~~~~~~~---------~~~~~i~~~s~s 214 (361)
T 3ftb_A 148 VIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-P--S-SSFVGEIK---------NYSCLFIIRAMT 214 (361)
T ss_dssp EEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-T--T-SSSGGGTT---------TCSSEEEEEESS
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-c--c-cchhHhcc---------cCCCEEEEeeCh
Confidence 999999999999999999999999999999999999999987665 2 1 23223322 347889999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR 351 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 351 (464)
|.+|++|+|+||++..++.+.+.+......++.+++.|.++..++++. +++++.++.++++++.+.+.|+++ ++.
T Consensus 215 K~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 290 (361)
T 3ftb_A 215 KFFAMPGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDT----NYIEESLLWIKKERKRFIEELNKIGFIK 290 (361)
T ss_dssp STTSCGGGCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred hhcCCCCcceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999994466677777766666778999999999999974 457888889999999999999988 787
Q ss_pred -eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 352 -CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 352 -~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
+.++.++ |+|++++. . +..+++..|+ ++||.++||..|+...++++||+++ ++++++.+++.|+++.+
T Consensus 291 ~~~~~~~~-~~~~~~~~-~------~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 291 RVFSPHAN-FVLCRLEN-I------SGEKLYDSLL-KEDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp EEECCSSS-EEEEEESS-S------CHHHHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred eecCCCCe-EEEEEcCC-C------CHHHHHHHHH-HCCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 7777765 78898875 1 1235667765 5699999999998766889999998 67888888888887765
Q ss_pred h
Q 037587 431 S 431 (464)
Q Consensus 431 ~ 431 (464)
.
T Consensus 360 ~ 360 (361)
T 3ftb_A 360 N 360 (361)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=360.39 Aligned_cols=356 Identities=20% Similarity=0.291 Sum_probs=276.0
Q ss_pred ceEEeecccccccHHH-HHHHHHhhhhhHHhhhcccccccccccCC-CCCCcHHHHHHHHHHHHHHcCCCCCCC-CCcEE
Q 037587 37 GIIQMGLAENQLSFDL-LESWLASNQEAVELKRNGESLFRELALFQ-DYHGFPDAKKELVKLMARIRGNKVKFD-PNKLV 113 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~~~~~~~~-~~~i~ 113 (464)
++|+|+.+.+.++++. +.++.+.. .. ..|+ +..|.+++|+++++++.+.++.++.+. +++|+
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~--------------~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~ 168 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGA--------------VA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLF 168 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHH--------------HT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEE
T ss_pred hheeccCCCCCcCCcHHHHHHHHHH--------------Hh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEE
Confidence 4688998888776543 33333321 11 3455 667899999999999966523112233 47999
Q ss_pred EeCChHHHHHHHHHH-----hcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC--CCCcccCHHHHHHHHHHHhhc
Q 037587 114 LTAGSTAANETLMFC-----LADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS--SNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 114 it~G~~~al~~~~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~i~~~~~~ 186 (464)
+|+|+++++..++.+ ++++||.|+++.|+|..+...+... |.+++.++++. +++|.+|++.|++.+.+
T Consensus 169 ~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~---- 243 (533)
T 3f6t_A 169 PTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELK-DYELVEVDLHSYEKNDWEIEPNEIEKLKDP---- 243 (533)
T ss_dssp EEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGG-GSEEEEECCCEETTTTSEECHHHHHHHSCT----
T ss_pred EECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHc-CCeEEEEEecCCcccCCCCCHHHHHHHhCC----
Confidence 999999999999998 7899999999999999998888876 99999998864 56789999999988753
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHh-hCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSK-SKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~-~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
++++|++++||||||.++|.+++++|+++|+ ++|+++|+||+|.++.++. .++.... .+++
T Consensus 244 --~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~-----~~~~~~~-----------~~~~ 305 (533)
T 3f6t_A 244 --SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF-----KSIYSVV-----------PYNT 305 (533)
T ss_dssp --TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC-----CCHHHHS-----------GGGE
T ss_pred --CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc-----cCHhhcC-----------CCCE
Confidence 8999999999999999999999999999999 6899999999999865532 3444332 2689
Q ss_pred EEEcCCCcCCCCCccEEEEEEecCHHHHHHH------------------------------------HHhc--ccCCCCh
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYSNNERVVSAA------------------------------------TKMS--SFGLVSS 307 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~------------------------------------~~~~--~~~~~s~ 307 (464)
++++||||.||++|+|+||++++++.+.+.+ .... ...+.+.
T Consensus 306 i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~ 385 (533)
T 3f6t_A 306 MLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLST 385 (533)
T ss_dssp EEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCH
T ss_pred EEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCCh
Confidence 9999999999999999999999765222211 1111 1234677
Q ss_pred HHHHH----HHHHcCC----chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccC-C--h--
Q 037587 308 QTQYL----LSRMLSD----KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN-T--F-- 374 (464)
Q Consensus 308 ~~q~~----~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~-~--~-- 374 (464)
+.|.+ +..++.. ..+ .+++++.++.++++++.+.+.|. .++.+.++++|+|+|++++...... . +
T Consensus 386 ~~q~a~a~~a~~~L~~~~g~~~~-~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~ 463 (533)
T 3f6t_A 386 PQQIMEALFSMTHLLTSTNGGSD-DPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRD 463 (533)
T ss_dssp HHHHHHHHHHHHHHTTCBGGGTB-CHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHH
Confidence 78877 3445541 223 57788999999999999999998 8888888999999999987421100 0 0
Q ss_pred -----hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 375 -----EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 375 -----~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
....+++..+++++||.+.||+.|+. .++++||+++..+++++++++++|+++++++.
T Consensus 464 ~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 464 YLTNNFEQVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp HHHHHCCHHHHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 01235777888889999999999986 46799999987789999999999999998764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=336.24 Aligned_cols=329 Identities=19% Similarity=0.245 Sum_probs=260.9
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|||+.|+|+++ ++.+.+++.+. +.....|++..+ .++|+++|++++ +++++|+
T Consensus 14 g~~~id~~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~ 71 (350)
T 3fkd_A 14 SSEIVNFSTTVWTDGDKDHLEKHLVEN-------------LNCIRHYPEPDA-GTLRQMLAKRNS--------VDNNAIL 71 (350)
T ss_dssp --CCEECSCCSCCCSCCHHHHHHHHHT-------------GGGGGSCCCTTC-HHHHHHHHHHTT--------CCGGGEE
T ss_pred cccEEEccCCCCCCCCCHHHHHHHHHh-------------HhHHhcCCCCcH-HHHHHHHHHHhC--------cCHHHEE
Confidence 367899999999986 46666666553 234567888776 999999999985 6789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEec-CCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC-SSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++.+++.++. ||+|+++.|+|..+...++.. |++++.+++ ++.+++. + +++++
T Consensus 72 ~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~--~--------------~~~~~ 132 (350)
T 3fkd_A 72 VTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMY-EHEVCFYPSNEDIGEAD--F--------------SNMDF 132 (350)
T ss_dssp EESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHT-TCEEEEEETTSCGGGSC--C--------------TTCSE
T ss_pred EcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHc-CCeEEEEecCCccccCc--c--------------CCCCE
Confidence 99999999999999987 999999999999999888877 999999998 6434433 2 17889
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++||||||.++|.+++++|+++|.++ ++|+||+|.++.+.+. . .. .... ..+++++++|||
T Consensus 133 v~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~--~--~~-~~~~---------~~~~~i~~~S~s 196 (350)
T 3fkd_A 133 CWLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEV--I--RP-ADIK---------GRKNLVMVYSFS 196 (350)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCC--C--CG-GGGT---------TCSSEEEEEESH
T ss_pred EEEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcc--h--hh-HHhh---------cCCCEEEEecCc
Confidence 99999999999999999999999998765 9999999998655443 1 11 1222 347899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKK-FTCNYMKENRKRLRKRKEMLVSGLKVA-GI 350 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 350 (464)
|.+|++|+|+||+++ ++.+.+.+......++++.+.|.++..++++.+ + .++.++.. ++++.+.+.|+++ |+
T Consensus 197 K~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~-~~~~~l~~~L~~~~~~ 270 (350)
T 3fkd_A 197 HAYGIPGLRIGYIVA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQF----TLPIRKWQ-RNTVDFITALNRLDGV 270 (350)
T ss_dssp HHHSCGGGCCEEEEC-CHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTTTT----CCCHHHHH-HHHHHHHHHHHHSTTE
T ss_pred hhccCcchheEeEEe-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHHHH----HHHHHHHH-HHHHHHHHHHhcCCCc
Confidence 999999999999999 666777777776667789999999999988765 3 22333333 6778899999888 88
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.+.++.++ |+|+.++.. ...+++..|++++||.++||..|+...++++||+++ +++++++++++|+++++
T Consensus 271 ~~~~~~~~-~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 271 EVHPSGTT-FFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLE 340 (350)
T ss_dssp EECCCSSS-EEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHT
T ss_pred EECCCCCc-EEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence 88776665 788888753 123577777755899999999998766889999998 68999999999999988
Q ss_pred hhCccc
Q 037587 431 SCNPQM 436 (464)
Q Consensus 431 ~~~~~~ 436 (464)
+++..+
T Consensus 341 ~~~~~~ 346 (350)
T 3fkd_A 341 KYEGHH 346 (350)
T ss_dssp C-----
T ss_pred Hhcccc
Confidence 776543
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=344.54 Aligned_cols=351 Identities=15% Similarity=0.150 Sum_probs=273.2
Q ss_pred CCceEEeecccc------cccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 35 PSGIIQMGLAEN------QLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 35 ~~~~i~l~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
..++|+|+.+.. +.+++.+.+++.+.... ......|.+..|..++|+++++++...++ ..++
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~ 96 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----------SSLNHEYLPILGLAEFRTCASRLALGDDS--PALQ 96 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhC----------hhhccCCCCCCCCHHHHHHHHHHHhcCCC--CccC
Confidence 356899999873 23446777776654200 12345787788999999999999964332 2346
Q ss_pred CCcEEE--eCChHHHHHHHHH--HhcCCC-----CeEEEcCCCCCChhhhcccCCCcE-EEEEecCCCCCcccCHHHHHH
Q 037587 109 PNKLVL--TAGSTAANETLMF--CLADPG-----DAFLLPTPYYPGFDRDLKWRPGVE-IVPIHCSSSNGFRITISALEN 178 (464)
Q Consensus 109 ~~~i~i--t~G~~~al~~~~~--~l~~~g-----d~Vlv~~p~y~~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~~l~~ 178 (464)
+++|++ |+|+++++.+++. .++++| |+|+++.|+|+++...+... |++ ++.++++++++|.+|++++++
T Consensus 97 ~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~ 175 (412)
T 1ajs_A 97 EKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA-GFKDIRSYRYWDTEKRGLDLQGFLS 175 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT-TCSCEEEEECEETTTTEECHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHc-CCceeEEEeeecCCCCccCHHHHHH
Confidence 889999 9999999999964 456899 99999999999998888877 999 999998544578899999999
Q ss_pred HHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC--CCCCccchhhhhhccCcC
Q 037587 179 AYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS--PSSSFISIMEAVMDRNID 256 (464)
Q Consensus 179 ~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~--~~~~~~~~~~l~~~~~~~ 256 (464)
.+.+. .++++++++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+.+ . .+.++..+..
T Consensus 176 ~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~--~~~~~~~~~~----- 245 (412)
T 1ajs_A 176 DLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEK--DAWAIRYFVS----- 245 (412)
T ss_dssp HHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHH--HTHHHHHHHH-----
T ss_pred HHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccc--cchHHHHHhc-----
Confidence 88641 2366788889999999999999999999999999999999999999876653 1 1224433322
Q ss_pred CCCCCCCcEEEEcCCCcCCCCCccEEEEEEe---cCHH---HHHHHHH-h-cccCCCChHHHHHHHHHcCCchhh---HH
Q 037587 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS---NNER---VVSAATK-M-SSFGLVSSQTQYLLSRMLSDKKFT---CN 325 (464)
Q Consensus 257 ~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~---~~~~---~~~~~~~-~-~~~~~~s~~~q~~~~~~l~~~~~~---~~ 325 (464)
..++++++.||||.||++|+|+||+++ +++. +...+.. . ..+..++++.|.++..+|++..+. .+
T Consensus 246 ----~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 321 (412)
T 1ajs_A 246 ----EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG 321 (412)
T ss_dssp ----TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred ----cCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHH
Confidence 236899999999999988999999998 4432 3333333 2 233335889999999999886421 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 037587 326 YMKENRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN 401 (464)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~ 401 (464)
++++.++.++++++++.+.|++++ +.+..+++|+|+|++++. +++..+++++||.+.|+
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~------ 384 (412)
T 1ajs_A 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLPS------ 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCCH-----------HHHHHHHHhCCEEecCC------
Confidence 678889999999999999999886 777788889999987651 35667777899999874
Q ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 402 EPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 402 ~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+||+++..+++++++++++|++++++.+
T Consensus 385 ----~Ris~~~~~~~~i~~~~~~l~~~l~~~~ 412 (412)
T 1ajs_A 385 ----GRINMCGLTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp ----SEEEGGGCCTTTHHHHHHHHHHHHHHCC
T ss_pred ----cEEEeeeCCHHHHHHHHHHHHHHHHhcC
Confidence 5999986689999999999999987643
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=345.09 Aligned_cols=355 Identities=16% Similarity=0.204 Sum_probs=272.2
Q ss_pred CceEEeeccccc---ccH-HHHHHHHH--hhhhhHHhhhcccccccccccC-CCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 36 SGIIQMGLAENQ---LSF-DLLESWLA--SNQEAVELKRNGESLFRELALF-QDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 36 ~~~i~l~~~~n~---~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Y-~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
.+.|||+.+.+. ++. +.+.+++. +.. ........| ++..|.++||++||++++ ++
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~Yp~~~~g~~~lr~~ia~~~~--------~~ 86 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVR----------MDGLDLRNYPGGVAGLPSARALFAGYLD--------VK 86 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCE----------ETTEETTSSCSCTTCCHHHHHHHHHHTT--------SC
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHh----------hcchhhhCCCCCCCChHHHHHHHHHHhC--------CC
Confidence 467999998766 332 23444332 110 001234689 788899999999999985 68
Q ss_pred CCcEEEeCChHHHHH--HHHHHhcC--C---------CCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHH
Q 037587 109 PNKLVLTAGSTAANE--TLMFCLAD--P---------GDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISA 175 (464)
Q Consensus 109 ~~~i~it~G~~~al~--~~~~~l~~--~---------gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 175 (464)
+++|++|+|+++++. +++.+++. + ||+|+++.|+|..+...+... |++++.++++.+ .+|++.
T Consensus 87 ~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~ 162 (423)
T 3ez1_A 87 AENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL-GFELLTVDMQSD---GPDVDA 162 (423)
T ss_dssp GGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH-TCEEEEEEEETT---EECHHH
T ss_pred hhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc-CCEEEeccCCCC---CCCHHH
Confidence 899999999999998 88888887 7 599999999999998888877 999999998753 489999
Q ss_pred HHHHHHHHhhcCCceEEEEE-eCCCCCCCCCCCHHHHHHHHHHH-hhCCeEEEEeccccccccCC-CCCCccchhhhhhc
Q 037587 176 LENAYQQAQTLNLKVKGVLI-TNPSNPLGTAMTHQELNHLINFS-KSKRIHIVSDEIYSGTVFDS-PSSSFISIMEAVMD 252 (464)
Q Consensus 176 l~~~i~~~~~~~~~~~~vil-~~P~NPtG~~~s~~~l~~i~~~~-~~~~~~lI~Deay~~~~~~~-~~~~~~~~~~l~~~ 252 (464)
|++++++ .+++++|++ ++||||||.++|.+++++|+++| +++|+++|+||+|..+.|.. ....+.++..+...
T Consensus 163 l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 238 (423)
T 3ez1_A 163 VERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARD 238 (423)
T ss_dssp HHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHH
T ss_pred HHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhc
Confidence 9998851 237888865 48899999999999999999999 99999999999999765554 21133455544211
Q ss_pred cCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCC--chhhHHHHH
Q 037587 253 RNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSD--KKFTCNYMK 328 (464)
Q Consensus 253 ~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~--~~~~~~~~~ 328 (464)
. +..+++++++||||+ +++|+|+||+++++ .+.+.+..... .+.++++.|.++..++.+ ..+ .++++
T Consensus 239 ~------~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~ 309 (423)
T 3ez1_A 239 A------GYPDRAFVFASTSKI-TFAGAGLGFVASSE-DNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGL-EGLMR 309 (423)
T ss_dssp H------TCTTSEEEEEESTTT-SCSSSSCEEEEECH-HHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH-HHHHH
T ss_pred c------CCCCeEEEEeCchhh-ccCCcceEEEEeCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchH-HHHHH
Confidence 1 134789999999999 56999999999954 45555544432 345788999999999887 444 67788
Q ss_pred HHHHHHHHHHHHHHHHHHh----CC--CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeC-CCCCCC-
Q 037587 329 ENRKRLRKRKEMLVSGLKV----AG--IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP-GSSCHC- 400 (464)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~----~g--~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~p-g~~f~~- 400 (464)
+.++.++++++.+.+.|.+ .| +.+..+++|+|+|++++.. . ..++ ..++.++||.++| |..|+.
T Consensus 310 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-~------~~~~-~~~l~~~gv~v~~~g~~~~~~ 381 (423)
T 3ez1_A 310 DHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-V------ADRV-VKLAEAAGVSLTPAGATYPAG 381 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-C------HHHH-HHHHHHTTEECCCTTTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-c------HHHH-HHHHHHCCcEEecCcccccCC
Confidence 8888888888888777765 44 6777788999999999853 1 1234 4455688999999 666653
Q ss_pred --CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 401 --NEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 401 --~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..++++||+++..+++++++++++|++++++..
T Consensus 382 ~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 382 QDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp CCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 246899999986689999999999999988654
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=355.68 Aligned_cols=356 Identities=15% Similarity=0.158 Sum_probs=273.5
Q ss_pred ccccCCCCCccchhhhhhh------cC-----CCCCCCCCCceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccc
Q 037587 7 SCDSHGQDSSYFLGWEAYE------NN-----PYDQLHNPSGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLF 74 (464)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~------~~-----~y~~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 74 (464)
.|+-|.+ .|+..| .+. .+ +|.+..+++++|+|+.+++.+++ +.+.+++.+... .
T Consensus 19 ~~~~~g~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~l~-----------~ 84 (427)
T 2hox_A 19 NCSEHGR--AFLDGI-ISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVL-----------V 84 (427)
T ss_dssp CCGGGEE--CCTTSC-EETTEECCEECTTEESTTSCEECTTCCEECCSCCCGGGHHHHTTSHHHHCEE-----------E
T ss_pred ccCcCCc--eeeccc-cccCCcccccccccCCCCCcccCCCceEEecCcCCCCCCCHHHHHhHHhhhh-----------c
Confidence 5777877 677777 444 33 67777788899999999998865 344444443210 0
Q ss_pred cccc--cCCCCC-C---cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh--------cCCCCeEEEcC
Q 037587 75 RELA--LFQDYH-G---FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL--------ADPGDAFLLPT 140 (464)
Q Consensus 75 ~~~~--~Y~~~~-g---~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l--------~~~gd~Vlv~~ 140 (464)
.... .|++.. | .++||++||+++++..+ ..+++++|++|+|+++++.+++.++ +++||.|++++
T Consensus 85 ~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~--~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~ 162 (427)
T 2hox_A 85 SPWHRMSYFFNPVSNFISFELEKTIKELHEVVGN--AAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHA 162 (427)
T ss_dssp CTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTC--BCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECS
T ss_pred CCcccccCCCCCCCccchHHHHHHHHHHHHHhCC--cCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeC
Confidence 1122 498888 8 89999999999997643 4467899999999999999999999 89999999999
Q ss_pred CCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh
Q 037587 141 PYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS 220 (464)
Q Consensus 141 p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~ 220 (464)
|+|+.+...++.. |++++.+ .+|++.|++.+.+ ++++|+++|||||||.+++ +.+ +
T Consensus 163 P~y~~~~~~~~~~-g~~~~~~--------~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~~l-------~- 218 (427)
T 2hox_A 163 PFYPVFREQTKYF-DKKGYVW--------AGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-AVI-------K- 218 (427)
T ss_dssp SCCHHHHHHHHHS-CBTTEEE--------EEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-CSS-------T-
T ss_pred CCcccHHHHHHHc-CCeeeee--------cCCHHHHHHhhcC------CceEEEEcCCCCCcccccH-HHH-------c-
Confidence 9999999888877 8887643 3567777766543 6889999999999999999 422 2
Q ss_pred CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc
Q 037587 221 KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300 (464)
Q Consensus 221 ~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~ 300 (464)
++..|.|++|. +.. .++..+ ..+++++++||||.+|++|+|+||++++++.+.+.+.++.
T Consensus 219 -~~~~i~d~~~~----~~~----~s~~~~-----------~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~ 278 (427)
T 2hox_A 219 -GCKSIYDMVYY----WPH----YTPIKY-----------KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYM 278 (427)
T ss_dssp -TCEEEEECTTC----STT----TSCCCS-----------CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHH
T ss_pred -CCCEEEeeccc----CCC----CCcccc-----------CCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHH
Confidence 45567777664 211 232222 1278999999999999999999999996566766666554
Q ss_pred cc--CCCChHHHHHHHHHcCCc-hh-------hHHHHHHHHHHHHHHHHHHHHHHHhC-CCee--------------ecC
Q 037587 301 SF--GLVSSQTQYLLSRMLSDK-KF-------TCNYMKENRKRLRKRKEMLVSGLKVA-GIRC--------------LKS 355 (464)
Q Consensus 301 ~~--~~~s~~~q~~~~~~l~~~-~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~--------------~~~ 355 (464)
.. +.++.++|.++..+|.+. ++ .++++++.++.++++++.+.+.|++. |+.+ ..+
T Consensus 279 ~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p 358 (427)
T 2hox_A 279 TKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRP 358 (427)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEEC
T ss_pred HhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCC
Confidence 43 468899999999888864 21 14677888999999999999999987 6554 346
Q ss_pred CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 356 NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 356 ~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
++|+|+|++++.. . .+++..+++++||.|+||..|+. ++++||||++. +++++++++++|++++++.
T Consensus 359 ~~g~f~~~~~~~~--~------~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~-~~e~l~~~l~~l~~~~~~~ 425 (427)
T 2hox_A 359 PSPSYAWVKCEWE--E------DKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKAK 425 (427)
T ss_dssp CCCSEEEEEECSG--G------GCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSS-CHHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEECCCc--H------HHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHhhc
Confidence 6789999999751 1 13677777788999999999986 67899999996 8999999999999988653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=367.26 Aligned_cols=354 Identities=16% Similarity=0.219 Sum_probs=281.9
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|+.+.+.++ ++.+.+++.+... .....|++. ..++|+++++++.+.++ +++++++|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~~ 94 (392)
T 3b1d_A 31 PQLLPAWIADMDFEVMPEVKQAIHDYAE------------QLVYGYTYA--SDELLQAVLDWEKSEHQ--YSFDKEDIVF 94 (392)
Confidence 37899999988775 4556666655321 124567765 68999999999987655 3467889999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC-CCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS-SNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
|+|+++++..++.+++++||+|+++.|+|+.+...+... |.+++.+++++ +++|.+|++.+++.+++ .++++|
T Consensus 95 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~v 168 (392)
T 3b1d_A 95 VEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLN-NRKLVSNSLKEENGLFQIDFEQLENDIVE-----NDVKLY 168 (392)
Confidence 999999999999999999999999999999998888766 99999998853 33578999999998863 267889
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+. .+.++..+..+ ..+++++++||||
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~--------~~~~~i~~~s~sK 238 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH--EHVSFNTVSPD--------FKDFALVLSSATK 238 (392)
Confidence 9999999999999999999999999999999999999998777554 33444444221 1378999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcccC---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh-C-
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSFG---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV-A- 348 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~- 348 (464)
.||++|+|+||++++++.+.+.+......+ ++++++|.++.+++++. .+++++.++.++++++.+.+.|++ +
T Consensus 239 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~ 315 (392)
T 3b1d_A 239 TFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG---KPWLVALKAVLEENIQFAVEYFAQEAP 315 (392)
Confidence 999999999999986654555554443332 45778888888888753 345788888899999999999987 4
Q ss_pred CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 349 GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 349 g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
++.+.++.+|+++|++++... ....+++..+++++||.+.||..|+...++++||+++. +++++++++++|+++
T Consensus 316 ~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~ 389 (392)
T 3b1d_A 316 RLKVMKPQGTYLIWLDFSDYG-----LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCC 389 (392)
Confidence 888888999999999987420 01224667776678999999999975567899999986 789999999999988
Q ss_pred HH
Q 037587 429 AQ 430 (464)
Q Consensus 429 l~ 430 (464)
++
T Consensus 390 l~ 391 (392)
T 3b1d_A 390 LP 391 (392)
Confidence 75
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=342.55 Aligned_cols=354 Identities=18% Similarity=0.277 Sum_probs=262.7
Q ss_pred CceEEeecccccccH---HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 36 SGIIQMGLAENQLSF---DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
.++|+|+.+.+...+ +.+.+++.+..... ........|++..|..+||+++|+++.+.+| +++++++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i 101 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESG-------KAADALCNYDGPQGKTALLNALAVLLRETLG--WDIEPQNI 101 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHT-------HHHHHHHSTTCTTSHHHHHHHHHHHHHHHHC--CCCCGGGE
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCC-------cccceeeccCCCCCcHHHHHHHHHHHHHHhC--CCCCcccE
Confidence 578999999877643 33444444321110 0001235799989999999999999988776 45788999
Q ss_pred EEeCChHHHHHHHHHHhcCCCC-----eEEEc-CCCCCChhhhccc-----CCCcEEEEEecCCCCCcccCHHHHHHHHH
Q 037587 113 VLTAGSTAANETLMFCLADPGD-----AFLLP-TPYYPGFDRDLKW-----RPGVEIVPIHCSSSNGFRITISALENAYQ 181 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd-----~Vlv~-~p~y~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 181 (464)
++|+|+++++.+++.+++++|| .|+++ +|+|+.+...+.. ..+..+..++.+ ..+|.+|++.++ +.
T Consensus 102 ~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~l~--~~ 178 (417)
T 3g7q_A 102 ALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG-QFKYHVDFEHLH--IG 178 (417)
T ss_dssp EEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGG-EEEEECCGGGCC--CC
T ss_pred EEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCc-ccccccCHHHhc--cc
Confidence 9999999999999999999987 89997 9999988765321 114455555432 124678888887 32
Q ss_pred HHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCC
Q 037587 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261 (464)
Q Consensus 182 ~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (464)
+++++|++++||||||.++|.+++++|+++|+++|+++|+||+|+.+ +.+. .+.. ..+ +.
T Consensus 179 ------~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~--~~~~---~~~--------~~ 238 (417)
T 3g7q_A 179 ------EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVP-FPGI--IFSE---ARP--------LW 238 (417)
T ss_dssp ------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCC--BCSC---CCC--------CC
T ss_pred ------cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccc-cccc--cccc---ccc--------CC
Confidence 37899999999999999999999999999999999999999999853 2111 1111 111 13
Q ss_pred CCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHH-HHHHHHHHH
Q 037587 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKE-NRKRLRKRK 338 (464)
Q Consensus 262 ~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 338 (464)
.++++++.|||| ++++|+|+||++++ +.+.+.+...... ..++++.|.++..++++.++ .++..+ .++.+++++
T Consensus 239 ~~~~i~~~s~sK-~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 315 (417)
T 3g7q_A 239 NPNIILCMSLSK-LGLPGSRCGIIIAN-DKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRV 315 (417)
T ss_dssp CTTEEEEEESGG-GTCTTSCCEEEECC-HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHH
T ss_pred CCCEEEEEechh-ccCCCcceEEEEeC-HHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHH
Confidence 478999999999 67899999999984 5555555444322 34678999999999998876 444544 777888888
Q ss_pred HHHHHHHHhC----CCeeecCCccEEEEEecCcc-cccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCC-------CCeE
Q 037587 339 EMLVSGLKVA----GIRCLKSNAGLFCWVDMRHL-LVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNE-------PGWF 406 (464)
Q Consensus 339 ~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~-~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~-------~~~~ 406 (464)
+.+.+.|.+. ++.+..+++|+|+|++++.. .. ..+++..+ .++||.++||+.|+... ++++
T Consensus 316 ~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~i 388 (417)
T 3g7q_A 316 QQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPIT------TELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCM 388 (417)
T ss_dssp HHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSC------HHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEE
T ss_pred HHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCC------HHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeE
Confidence 8888888763 57888889999999999852 11 23466666 57899999999887543 5699
Q ss_pred EEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 407 RICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 407 Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
||+++. +++++++++++|++++++.
T Consensus 389 Ris~~~-~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 389 RMNYVP-EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp EEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred EEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 999996 9999999999999998765
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=341.35 Aligned_cols=349 Identities=15% Similarity=0.195 Sum_probs=266.1
Q ss_pred CceEEeecccc------cccHHHHHHHHHh-hhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 36 SGIIQMGLAEN------QLSFDLLESWLAS-NQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 36 ~~~i~l~~~~n------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
.++|+|+.+.. ..+++.+.+++.+ .... .....|++..|..++|+++++++...++ +.++
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~ 95 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-----------SYNHEYLGITGLPSLTSNAAKIIFGTQS--DALQ 95 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-----------ccccCCCCCCCcHHHHHHHHHHHhcCCC--CCCC
Confidence 56799998763 1344666766655 4210 2345788888999999999999975333 3356
Q ss_pred CCcEEE--eCChHHHHHHHH--HHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEec-CCCCCcccCHHHHHHHHHHH
Q 037587 109 PNKLVL--TAGSTAANETLM--FCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC-SSSNGFRITISALENAYQQA 183 (464)
Q Consensus 109 ~~~i~i--t~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~i~~~ 183 (464)
+++|++ |+|+++++.+++ ..++.+||+|+++.|+|+++...++.. |++++.+++ ++ +++.+|++.+++.+++.
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQ-GLKTATYPYWAN-ETKSLDLNGFLNAIQKA 173 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTT-TCCEEEEECEET-TTTEECHHHHHHHHHHS
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHc-CceEEEEeeecC-CCCccCHHHHHHHHHhC
Confidence 889999 999999999983 444579999999999999999888876 999999998 43 36789999999998751
Q ss_pred hhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCC
Q 037587 184 QTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS 263 (464)
Q Consensus 184 ~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (464)
.....++++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++....+.++..+... ..+
T Consensus 174 ---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 242 (412)
T 1yaa_A 174 ---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK--------LST 242 (412)
T ss_dssp ---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH--------TTT
T ss_pred ---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc--------CCC
Confidence 112445555999999999999999999999999999999999999987665300011233333221 112
Q ss_pred --cEEEEcCCCcCCCCCccEEEEEE--e----cCHH----HHHHHHH-hc-ccCCCChHHHHHHHHHcCCchhh---HHH
Q 037587 264 --RIHIVYSLSKDFSMPGFRVGMIY--S----NNER----VVSAATK-MS-SFGLVSSQTQYLLSRMLSDKKFT---CNY 326 (464)
Q Consensus 264 --~vi~l~S~SK~~g~~GlRiG~l~--~----~~~~----~~~~~~~-~~-~~~~~s~~~q~~~~~~l~~~~~~---~~~ 326 (464)
++++++||||.||++|+|+||++ + .++. +.+.+.. .. .+..++.+.|.++..++++..+. .++
T Consensus 243 ~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 322 (412)
T 1yaa_A 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKD 322 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999997899999998 6 2343 4444444 22 33445789999999999887521 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 037587 327 MKENRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNE 402 (464)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~ 402 (464)
+++.++.++++++.+.+.|++++ +++.++++|+|+|+.++. +.+..+++++||.+.|
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~-------- 383 (412)
T 1yaa_A 323 MVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVA-------- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCH-----------HHHHHHHHhCCEEecc--------
Confidence 88889999999999999999876 888888999999986641 2346677788999986
Q ss_pred CCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 403 PGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 403 ~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
++||+++..+++++++++++|+++++.
T Consensus 384 --~~Ris~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 384 --SGRASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp --TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred --CcEEEEccCCHhHHHHHHHHHHHHHHh
Confidence 479999866899999999999998864
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=341.62 Aligned_cols=343 Identities=15% Similarity=0.204 Sum_probs=264.5
Q ss_pred CceEEeeccc--cc----ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 36 SGIIQMGLAE--NQ----LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 36 ~~~i~l~~~~--n~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
.++|||+.+. ++ .+++.+.+++.+.... .....|.+..|..+||+++++++....+ .++++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 92 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-----------ETTKNYLGIDGIPEFGRCTQELLFGKGS--ALIND 92 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCc-----------ccccCCCCCCCCHHHHHHHHHHHhcCCC--Ccccc
Confidence 4679999997 22 2346677776654211 1345788888999999999999964221 12458
Q ss_pred CcEEE--eCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 110 NKLVL--TAGSTAANETLMFCL--ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 110 ~~i~i--t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
++|++ |+|+++++..++.++ +.+||+|+++.|+|+++...++.. |.+++.++.++++++.+|++.+++.+++
T Consensus 93 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 168 (396)
T 2q7w_A 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLNE--- 168 (396)
T ss_dssp TCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTT---
T ss_pred ccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHc-CCceEEEecccCCCCCcCHHHHHHHHHh---
Confidence 89998 999999999998766 469999999999999999888877 9999999986445688999999998853
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC-CCCCccchhhhhhccCcCCCCCCCCc
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS-PSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
..++++++++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++ . ...++..+.. ..++
T Consensus 169 ~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~---------~~~~ 237 (396)
T 2q7w_A 169 AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEE--DAEGLRAFAA---------MHKE 237 (396)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHH--HTHHHHHHHH---------HCSC
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccc--hhHHHHHHHh---------cCCc
Confidence 11246778889999999999999999999999999999999999999876642 1 1123333322 1268
Q ss_pred EEEEcCCCcCCCCCccEEEEEEe--cCH----HHHHHHHHh--cccCCCChHHHHHHHHHcCCc----hhhHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYS--NNE----RVVSAATKM--SSFGLVSSQTQYLLSRMLSDK----KFTCNYMKENRK 332 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~--~~~----~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~ 332 (464)
+++++||||.||++|+|+||+++ +++ .+...+... ..+..++++.|.++..++++. .+ .+++++.++
T Consensus 238 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~-~~~~~~~~~ 316 (396)
T 2q7w_A 238 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIW-EQELTDMRQ 316 (396)
T ss_dssp EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHH-HHHHHHC-C
T ss_pred EEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHH-HHHHHHHHH
Confidence 99999999999999999999986 333 233333321 233445889999999999886 22 466788889
Q ss_pred HHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 037587 333 RLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRI 408 (464)
Q Consensus 333 ~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ri 408 (464)
.++++++.+.+.|++.+ +++.++++|+|+|++++. +.+..+++++||.+.|| +||
T Consensus 317 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ri 375 (396)
T 2q7w_A 317 RIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVAS----------GRV 375 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCCH-----------HHHHHHHHhcCeeecCC----------ceE
Confidence 99999999999999987 787788899999987752 24566677889999873 699
Q ss_pred EeecCCHHHHHHHHHHHHHH
Q 037587 409 CFANITEETLQVALQRIKVF 428 (464)
Q Consensus 409 s~~~~~~e~l~~~l~~l~~~ 428 (464)
+++..+++++++++++|+++
T Consensus 376 s~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 376 NVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp EGGGCCTTTHHHHHHHHHHH
T ss_pred EEeecCHHHHHHHHHHHHhc
Confidence 99866899999999999875
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-41 Score=339.01 Aligned_cols=364 Identities=20% Similarity=0.278 Sum_probs=271.5
Q ss_pred CceE-EeecccccccHHH---HHHHHHhhhhhHHhhhcc-c-cc-ccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 36 SGII-QMGLAENQLSFDL---LESWLASNQEAVELKRNG-E-SL-FRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 36 ~~~i-~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
+++| +|+.+.+..+++. +.+++.+.... ..++ . .. ......|++..|.++||++||+++++.+| +.++
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~ 105 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGND---NDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYD--WNLT 105 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSC---SCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCC
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhc---cccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcC--CCCC
Confidence 4779 9999977765433 33333322100 0000 0 00 11235799888999999999999988876 4578
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCC--------------eEEEc-CCCCCChhhh------cccCCCcEEEEEecCCCC
Q 037587 109 PNKLVLTAGSTAANETLMFCLADPGD--------------AFLLP-TPYYPGFDRD------LKWRPGVEIVPIHCSSSN 167 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~~gd--------------~Vlv~-~p~y~~~~~~------~~~~~g~~~~~v~~~~~~ 167 (464)
+++|++|+|+++++.+++.+++++|| .|+++ +|+|..+... +... |..++.++.+.++
T Consensus 106 ~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (444)
T 3if2_A 106 SENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAV-LPHIDEVTHDGEE 184 (444)
T ss_dssp GGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEEC-CCEEEEEEETTEE
T ss_pred HHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhcc-CceEEeccccccc
Confidence 89999999999999999999999988 78775 9999988763 3334 8888888876422
Q ss_pred ---CcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 168 ---GFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 168 ---~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
+|.+|++.|++++... .+++++|++++||||||.++|.+++++|+++|+++|+++|+||+|+.+ +... .+.
T Consensus 185 g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~--~~~ 258 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNI--IYS 258 (444)
T ss_dssp EEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCC--BCS
T ss_pred CccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc-cccc--ccc
Confidence 3789999999885431 247899999999999999999999999999999999999999999853 2111 111
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchh
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKF 322 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~ 322 (464)
. ... +..++++++.||||. +++|+|+||++++ +.+.+.+..... .+..+++.|.++..++.+..+
T Consensus 259 ~---~~~--------~~~~~~i~~~S~sK~-~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 325 (444)
T 3if2_A 259 D---AHL--------NWDNNTILCFSLSKI-GLPGMRTGIIVAD-AKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRI 325 (444)
T ss_dssp C---CCC--------CCCTTEEEEEESTTT-TCGGGCCEEEECC-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHH
T ss_pred c---ccc--------cCCCCEEEEechhhc-cCCCCceEEEEEC-HHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCch
Confidence 1 101 134789999999997 7799999999984 445555544332 245788999999999998776
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcc-cccCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 323 TCNYMKE-NRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHL-LVSNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 323 ~~~~~~~-~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~-~~~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
.++..+ .++.++++++.+.+.|.+. ++.+..+.+|+|+|++++.. .. ..+++..+ .++||.++||+
T Consensus 326 -~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l-~~~gi~v~~g~ 397 (444)
T 3if2_A 326 -KQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPIS------TLDLYERL-KAKGTLIVPSE 397 (444)
T ss_dssp -HHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSC------HHHHHHHH-HHTTEECEEGG
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCC------HHHHHHHH-HHCCeEEecch
Confidence 444444 6778888888888887763 56777788999999999752 21 22466665 57899999999
Q ss_pred CCCCCC--------CCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 397 SCHCNE--------PGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 397 ~f~~~~--------~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.|.... .+++||+++. +++++++++++|++++++..
T Consensus 398 ~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 398 YFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp GSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHHH
Confidence 886432 2689999997 99999999999999987654
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=341.40 Aligned_cols=346 Identities=15% Similarity=0.194 Sum_probs=265.1
Q ss_pred CceEEeecccc-ccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 36 SGIIQMGLAEN-QLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
.++|+|+++.+ .++ ++.+.+++.+.. ......|.+..|.++||+++++++....+ .++++++|.
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~------------~~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~ 106 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQAT------------LGTNMDYAPVTGIASFVEEAQKLCFGPTC--AALRDGRIA 106 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCC------------CCSCCCCCCTTCCHHHHHHHHHHHHCSSC--HHHHTTCEE
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcC------------ccccccCCCCCCcHHHHHHHHHHHcCCCc--hhhccCcee
Confidence 47899999985 442 344445544431 13456798888999999999999842110 012267884
Q ss_pred --EeCChHHHHHHH---HHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCC
Q 037587 114 --LTAGSTAANETL---MFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNL 188 (464)
Q Consensus 114 --it~G~~~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 188 (464)
.|.|+++++..+ +.+++++||.|++++|+|..+...++.. |++++.++++.+++|.+|++.+++.+++. ..
T Consensus 107 ~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~ 182 (409)
T 4eu1_A 107 SCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-GMELTPYSYYDPATKGLNLAGMLECLDKA---PE 182 (409)
T ss_dssp EEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-TCEEEEECCEETTTTEECHHHHHHHHHHS---CT
T ss_pred eeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEEEeecCcCCcCcHHHHHHHHHhC---CC
Confidence 589999998875 3456789999999999999999988877 99999999854567899999999998641 12
Q ss_pred ceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEE
Q 037587 189 KVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIV 268 (464)
Q Consensus 189 ~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l 268 (464)
+.+++++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++......++..+.. ..++++++
T Consensus 183 ~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~ 253 (409)
T 4eu1_A 183 GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVD---------MVPNLIVA 253 (409)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHT---------TSSCCEEE
T ss_pred CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHh---------hCCcEEEE
Confidence 456677799999999999999999999999999999999999998766541001123333322 33688999
Q ss_pred cCCCcCCCCCccEEEEE--EecCHH----HHHHHHHh--cccCCCChHHHHHHHHHcCCchhh---HHHHHHHHHHHHHH
Q 037587 269 YSLSKDFSMPGFRVGMI--YSNNER----VVSAATKM--SSFGLVSSQTQYLLSRMLSDKKFT---CNYMKENRKRLRKR 337 (464)
Q Consensus 269 ~S~SK~~g~~GlRiG~l--~~~~~~----~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 337 (464)
+||||+||++|+|+||+ ++.++. +.+.+... .....++.+.|.++..++++..+. .+++++.++.++++
T Consensus 254 ~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (409)
T 4eu1_A 254 QSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEV 333 (409)
T ss_dssp EECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 655655 44444433 233456789999999999986432 34577888999999
Q ss_pred HHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecC
Q 037587 338 KEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANI 413 (464)
Q Consensus 338 ~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~ 413 (464)
++.+.+.|++.| +.+.++++|+|+|++++. +++..+++++||.+.|| .||+++..
T Consensus 334 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gv~v~p~----------~Ri~~~~~ 392 (409)
T 4eu1_A 334 RKRLVSELKACGSVHDWSHIERQVGMMAYTGLTR-----------EQVELLRSEYHIYMTLN----------GRAAVSGL 392 (409)
T ss_dssp HHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGC
T ss_pred HHHHHHHHHhcCCCCCcceecCCceEEEEeCCCH-----------HHHHHHHHcCCEEEcCC----------CEEEEEec
Confidence 999999999987 777788999999977652 35677888889999975 38999877
Q ss_pred CHHHHHHHHHHHHHHH
Q 037587 414 TEETLQVALQRIKVFA 429 (464)
Q Consensus 414 ~~e~l~~~l~~l~~~l 429 (464)
+++++++++++|++++
T Consensus 393 ~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 393 NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp CTTTHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHh
Confidence 8888999999998875
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-41 Score=340.56 Aligned_cols=351 Identities=17% Similarity=0.211 Sum_probs=268.3
Q ss_pred CceEEeecccc-cc-----cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC---
Q 037587 36 SGIIQMGLAEN-QL-----SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK--- 106 (464)
Q Consensus 36 ~~~i~l~~~~n-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--- 106 (464)
+..|+|+++.. .. ..+.+.+++...... .......|.+..|.+++|+++++++. + ..
T Consensus 49 ~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~---------~~~~~~~Y~~~~G~~~lr~~ia~~l~---g--~~~~~ 114 (448)
T 3meb_A 49 PKKVNLGVGAYRDESGKPWILPAVKEAEAIISSD---------LSKYNKEYPPVAGFPLFLEAAQFLMF---G--KDSKA 114 (448)
T ss_dssp TTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHC---------TTTTCCSCCCTTCCHHHHHHHHHHHH---C--TTCHH
T ss_pred CCeEEeecccccCCCCCEechHHHHHHHHHHhhc---------ccCCCCCCCCCcchHHHHHHHHHHhc---C--CCccc
Confidence 34699999865 22 224455553332100 01234579888899999999999983 2 11
Q ss_pred CCCCcEEE--eCChHHHHHH--HHHHhcCCCCeEEEcCCCCCChhhhcc----cCCCcEEEEEecCCCC-CcccCHHHHH
Q 037587 107 FDPNKLVL--TAGSTAANET--LMFCLADPGDAFLLPTPYYPGFDRDLK----WRPGVEIVPIHCSSSN-GFRITISALE 177 (464)
Q Consensus 107 ~~~~~i~i--t~G~~~al~~--~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~~g~~~~~v~~~~~~-~~~~d~~~l~ 177 (464)
+++++|++ |+|+++++.+ .+.+++.+||+|++++|+|..+...++ .. |++++.+++...+ +|.+|++.++
T Consensus 115 ~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~-G~~v~~~~~~~~~~~~~~d~e~l~ 193 (448)
T 3meb_A 115 AQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKL-KVPYKEYTYLRKDGELEIDFSNTK 193 (448)
T ss_dssp HHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTT-TSCCEEECCBCTTSCSSBCHHHHH
T ss_pred cCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhC-CCeEEEEeccccccCCCcCHHHHH
Confidence 22689999 9999999988 556678899999999999999988888 76 9999999984333 6889999999
Q ss_pred HHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCC
Q 037587 178 NAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDE 257 (464)
Q Consensus 178 ~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~ 257 (464)
+.+++. ..+.+++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++......++..+..
T Consensus 194 ~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~------ 264 (448)
T 3meb_A 194 KDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVD------ 264 (448)
T ss_dssp HHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHH------
T ss_pred HHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhh------
Confidence 998751 12567888899999999999999999999999999999999999998766541001123333333
Q ss_pred CCCCCCcEEEEcCCCcCCCCCccEEEEE--Ee--------cCH----HHHHHHHHh--cccCCCChHHHHHHHHHcCCch
Q 037587 258 SDDLWSRIHIVYSLSKDFSMPGFRVGMI--YS--------NNE----RVVSAATKM--SSFGLVSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 258 ~~~~~~~vi~l~S~SK~~g~~GlRiG~l--~~--------~~~----~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~ 321 (464)
..++++++.||||.||++|+|+||+ ++ +++ .+...+... ..+.+++.+.|.++..++.+.+
T Consensus 265 ---~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~ 341 (448)
T 3meb_A 265 ---AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKR 341 (448)
T ss_dssp ---TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHH
T ss_pred ---cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChH
Confidence 2368899999999999999999998 66 444 344434332 2334567899999999999875
Q ss_pred hh---HHHHHHHHHHHHHHHHHHHHHHHhC---C------CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcC
Q 037587 322 FT---CNYMKENRKRLRKRKEMLVSGLKVA---G------IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVG 389 (464)
Q Consensus 322 ~~---~~~~~~~~~~~~~~~~~l~~~l~~~---g------~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~g 389 (464)
+. .+++++.++.++++++.+.+.|+++ + +.+..+++|+|+|+.++. +++..+++++|
T Consensus 342 l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~ll~~~g 410 (448)
T 3meb_A 342 LLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLTP-----------EHVDYLKEKWS 410 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCCH-----------HHHHHHHHhCC
Confidence 42 2447888899999999999999987 3 556678899999988752 46777888899
Q ss_pred eEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 390 LNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 390 I~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
|.+.||+ .|||++..+++++++++++|++++++..
T Consensus 411 V~v~~G~---------gRis~a~~~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 411 IYLVKAG---------GRMSMCGLTESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp EEECSGG---------GEEEGGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred EEEeCCC---------cEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence 9999875 2999987678889999999999998554
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=327.48 Aligned_cols=346 Identities=18% Similarity=0.271 Sum_probs=265.6
Q ss_pred hhhhhhcCCCCCCC---CCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHH
Q 037587 20 GWEAYENNPYDQLH---NPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVK 95 (464)
Q Consensus 20 ~~~~~~~~~y~~~~---~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 95 (464)
......-.+|.+.. ...++|+|+.|+|+++ ++.+.+++.+.... . ......|++. +..++|+++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~y~~~-~~~~lr~~la~ 76 (360)
T 3hdo_A 7 RQNIASMKGYIPGYQPPDIASWIKLNTNENPYPPSPEVVKAILEELGP-----D----GAALRIYPSA-SSQKLREVAGE 76 (360)
T ss_dssp CHHHHHCCCCCCCCCCSCCTTSEECSSCCCSSCCCHHHHHHHHHHHTT-----T----CGGGGSCCCS-SCHHHHHHHHH
T ss_pred HHHHHhcCCcCCCCCCccccceeeccCCCCCCCCCHHHHHHHHHHHhc-----c----cchhhcCCCC-chHHHHHHHHH
Confidence 33444455665543 3457899999999986 46677776664211 0 0125678765 56999999999
Q ss_pred HHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHH
Q 037587 96 LMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISA 175 (464)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 175 (464)
+++ +++++|++|+|+++++..++.+++++||+|+++.|+|.++...+... |++++.++++. ++.+ ++
T Consensus 77 ~~g--------~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~--~~ 143 (360)
T 3hdo_A 77 LYG--------FDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQ-GARVRTFGLTG--DFRI--AG 143 (360)
T ss_dssp HHT--------CCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHH-TCEEEEECBCT--TSSB--TT
T ss_pred HhC--------cCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHC-CCEEEEeeCCC--CCCH--HH
Confidence 995 67899999999999999999999999999999999999998888877 99999999864 3444 44
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCc
Q 037587 176 LENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNI 255 (464)
Q Consensus 176 l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~ 255 (464)
+++. .+++++++++|+||||.+++.+++.++ |+++|+++|+||+|.++ .+. .... +..
T Consensus 144 l~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l---~~~~~~~li~De~~~~~--~~~--~~~~---~~~---- 201 (360)
T 3hdo_A 144 FPER--------YEGKVFFLTTPNAPLGPSFPLEYIDEL---ARRCAGMLVLDETYAEF--AES--NALE---LVR---- 201 (360)
T ss_dssp CCSS--------BCSSEEEEESSCTTTCCCCCHHHHHHH---HHHBSSEEEEECTTGGG--SSC--CCTH---HHH----
T ss_pred HHhh--------cCCCEEEEeCCCCCCCCCcCHHHHHHH---HHHCCCEEEEECChHhh--CCc--chhH---Hhc----
Confidence 3322 245789999999999999998876665 45789999999999974 332 2222 222
Q ss_pred CCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q 037587 256 DESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLR 335 (464)
Q Consensus 256 ~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 335 (464)
..+++++++||||.+|++|+|+||+++ ++.+.+.+......++.+++.|.++..++++.+ ++++.++.++
T Consensus 202 -----~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~ 271 (360)
T 3hdo_A 202 -----RHENVVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDHYNLDRLAQAACVAALRDQA----YLSECCRRIR 271 (360)
T ss_dssp -----HCSSEEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCHH----HHHHHHHHHH
T ss_pred -----cCCCEEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHH
Confidence 237899999999999999999999999 566666676666667789999999999998744 4778888899
Q ss_pred HHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCH
Q 037587 336 KRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITE 415 (464)
Q Consensus 336 ~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~ 415 (464)
++++.+.+.|+++|+.+.++.++ |+|+.++.. +..++...| .++||.++|+..+ ..++++||+++ ++
T Consensus 272 ~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~-------~~~~l~~~l-~~~gi~v~~~~~~--~~~~~iRis~~--~~ 338 (360)
T 3hdo_A 272 ETREWFTTELRSIGYDVIPSQGN-YLFATPPDR-------DGKRVYDGL-YARKVLVRHFSDP--LLAHGMRISIG--TR 338 (360)
T ss_dssp HHHHHHHHHHHHTTCEECCCSSS-EEEEECTTC-------CHHHHHHHH-HHTTEECBCCCST--TTTTSEEEECC--CH
T ss_pred HHHHHHHHHHHHCCCEEcCCCcc-EEEEECCCC-------CHHHHHHHH-HHCCEEEEECCCC--CCCCEEEEEcC--CH
Confidence 99999999999989988776664 888887631 122466655 5789999998762 34689999998 79
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 037587 416 ETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 416 e~l~~~l~~l~~~l~~~~ 433 (464)
+++++++++|+++.++..
T Consensus 339 ~e~~~l~~al~~~~~~~~ 356 (360)
T 3hdo_A 339 EEMEQTLAALKEIGEGHH 356 (360)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999999876543
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=334.97 Aligned_cols=314 Identities=23% Similarity=0.339 Sum_probs=264.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCc
Q 037587 77 LALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGV 156 (464)
Q Consensus 77 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~ 156 (464)
...|++..|..+||+++++++. .+++++|++|+|+++++..++.+++++||+|+++.|+|..+...+... |+
T Consensus 56 ~~~y~~~~g~~~l~~~la~~~~-------~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 127 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSVSQLYT-------GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSL-GA 127 (375)
T ss_dssp CCSSCCTTCCHHHHHHHHTTSS-------SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHT-TC
T ss_pred CcCCCCCCChHHHHHHHHHHhc-------cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CC
Confidence 4578888899999999999873 267899999999999999999999999999999999999988888777 99
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccccc
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF 236 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~ 236 (464)
+++.++++++++|.+|++++++++++ ++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+
T Consensus 128 ~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~ 201 (375)
T 3op7_A 128 EVDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE 201 (375)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred EEEEEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 99999988667888999999998754 789999999999999999999999999999999999999999998655
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHH
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLS 314 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~ 314 (464)
.+ ..+.... .+++++++||||.+|++|+|+||+++ ++.+.+.+...... .+.+++.|.++.
T Consensus 202 ~~----~~~~~~~------------~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (375)
T 3op7_A 202 LD----VPSIIEV------------YDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQ 264 (375)
T ss_dssp SC----CCCHHHH------------CTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHH
T ss_pred cC----CCchhhh------------cCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 42 2333222 26789999999999999999999999 66666666555443 345778888888
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS 393 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~ 393 (464)
.++... .+++++.++.++++++.+.+.|++. ++.+..+.+|+++|+.++.... ..+++..+++++||.+.
T Consensus 265 ~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~v~ 335 (375)
T 3op7_A 265 LALAHY---QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMP------MEDFCLQLLQEHGVLLV 335 (375)
T ss_dssp HHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSC------HHHHHHHHHHHHCEECE
T ss_pred HHHhcc---HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCC------HHHHHHHHHHhCCEEEe
Confidence 888752 5567888888999999999999986 7888888888889988874321 23577888778899999
Q ss_pred CCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 394 PGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 394 pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
||..|+. ++++||+++. +++++++++++|++++++..
T Consensus 336 ~g~~~~~--~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 336 PGNRFER--DGYVRLGFAC-EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp EGGGGTC--TTEEEECCCS-CHHHHHHHHHHHHHHHGGGC
T ss_pred ChhhhCC--CCeEEEEecC-CHHHHHHHHHHHHHHHHHHh
Confidence 9998874 7899999985 67999999999999997654
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=323.82 Aligned_cols=334 Identities=18% Similarity=0.253 Sum_probs=265.3
Q ss_pred eEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeC
Q 037587 38 IIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA 116 (464)
Q Consensus 38 ~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~ 116 (464)
.|||+.|+|+++ ++.+.+++.+..... ......|++..+ .++|+++++++++.+| +++++++|++|+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~~y~~~~~-~~l~~~la~~l~~~~g--~~~~~~~v~~~~ 99 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKI---------ATELNRYPERDA-VELRDELAAYITKQTG--VAVTRDNLWAAN 99 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHH---------GGGTTSCCCTTC-HHHHHHHHHHHHHHHC--CCCCGGGEEEES
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhc---------ccccccCCCccH-HHHHHHHHHhhhhccc--CCCChHhEEECC
Confidence 399999999875 466776666542210 012467877666 8999999999988776 346788999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEe
Q 037587 117 GSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT 196 (464)
Q Consensus 117 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~ 196 (464)
|+++++..++.+++++||.|+++.|+|+++...+... |.+++.++.+ ++|.+|++++++.+++. ++++|+++
T Consensus 100 G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~ 171 (369)
T 3cq5_A 100 GSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGT-HTEFIAVSRG--ADFRIDMDVALEEIRAK-----QPDIVFVT 171 (369)
T ss_dssp HHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHT-TCEEEEEECC--TTSSCCHHHHHHHHHHH-----CCSEEEEE
T ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCC--cCCCCCHHHHHHHhhcc-----CCCEEEEe
Confidence 9999999999999999999999999999998888777 9999999965 45789999999988752 67889999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCC-cEEEEcCCCcCC
Q 037587 197 NPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS-RIHIVYSLSKDF 275 (464)
Q Consensus 197 ~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~vi~l~S~SK~~ 275 (464)
+|+||||.++|.+++.++++.| ++++|+||+|.++.+. . +...+.+ ..+ +++++.||||.+
T Consensus 172 ~~~nptG~~~~~~~l~~l~~~~---~~~li~De~~~~~~~~-~-----~~~~~~~---------~~~~~~i~~~s~sK~~ 233 (369)
T 3cq5_A 172 TPNNPTGDVTSLDDVERIINVA---PGIVIVDEAYAEFSPS-P-----SATTLLE---------KYPTKLVVSRTMSKAF 233 (369)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHC---SSEEEEECTTGGGCCS-C-----CGGGGTT---------TCTTTEEEEEESSSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHhC---CCEEEEECCchhhcCC-c-----chHHHHh---------hCCCCEEEEEechHhc
Confidence 9999999999998888888765 4999999999975432 2 2222322 225 889999999999
Q ss_pred CCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC
Q 037587 276 SMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS 355 (464)
Q Consensus 276 g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 355 (464)
|++|+|+||++++++ +.+.+......++++.+.|.++..++++.+ ++++.++.++++++.+.+.|++.|+++.++
T Consensus 234 ~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 308 (369)
T 3cq5_A 234 DFAGGRLGYFVANPA-FIDAVMLVRLPYHLSALSQAAAIVALRHSA----DTLGTVEKLSVERVRVAARLEELGYAVVPS 308 (369)
T ss_dssp SCGGGCCEEEEECTH-HHHHHHTTSCTTCSCHHHHHHHHHHHHTHH----HHHTHHHHHHHHHHHHHHHHHHHTCEEECC
T ss_pred CCcccceEEEEeCHH-HHHHHHHcCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHhCCCEECCC
Confidence 999999999999654 555565555556688999999999988743 467788888999999999998889888866
Q ss_pred CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 356 NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 356 ~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
.+ .|+|++++. +..++...+ .++||.++||. .++++||+++ +++++++++++|+++++.
T Consensus 309 ~~-~~~~~~~~~--------~~~~l~~~l-~~~gi~v~~~~-----~~~~iRis~~--~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 309 ES-NFVFFGDFS--------DQHAAWQAF-LDRGVLIRDVG-----IAGHLRTTIG--VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp SS-SEEEEECCS--------SHHHHHHHH-HHTTEECBCCS-----CTTEEEEECC--CHHHHHHHHHHHHHHHTT
T ss_pred CC-eEEEEECCC--------CHHHHHHHH-HHCCEEEEECC-----CCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 55 588998861 122466666 57899999982 3578999998 689999999999988753
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-41 Score=335.16 Aligned_cols=347 Identities=14% Similarity=0.121 Sum_probs=255.6
Q ss_pred eEEeeccc------ccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc
Q 037587 38 IIQMGLAE------NQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 38 ~i~l~~~~------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~ 111 (464)
.|||+++. ++..++.|+++.+...+. .....|.|..|.++||+++++++-.. ........
T Consensus 46 kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~-----------~~~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~ 111 (420)
T 4h51_A 46 KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM-----------NLDYEYLPISGYQPFIDEAVKIIYGN---TVELENLV 111 (420)
T ss_dssp CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT-----------TCCCCCCCTTCCHHHHHHHHHHHHC------CGGGEE
T ss_pred CEEeecCcccCCCCCCCCCHHHHHHHHHHhcC-----------CCCCCCCCcCChHHHHHHHHHHhcCC---Cccccccc
Confidence 59999982 233347777776554221 23346999999999999999987421 11111223
Q ss_pred EEEeCChHHHHHHHHHH----hcCCCCeEEEcCCCCCChhhhcccCCCcE-EEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 112 LVLTAGSTAANETLMFC----LADPGDAFLLPTPYYPGFDRDLKWRPGVE-IVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 112 i~it~G~~~al~~~~~~----l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
.+.|.|++.++..++.. +..|||+|++++|+|+.|...++.. |.+ +..++....+.+.+|.+.+.+.+.. .
T Consensus 112 ~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~a-G~~~V~~~~~~~~~~~~~d~~~~~~~l~~---~ 187 (420)
T 4h51_A 112 AVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAA-GWKNICTYAYYDPKTVSLNFEGMKKDILA---A 187 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHT-TCCCEEEEECEEGGGTEECHHHHHHHHHH---S
T ss_pred eeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHc-CCeEEEeeccccccccCCCHHHHHHHHhc---c
Confidence 44588888887766554 4579999999999999999999887 876 4455554456778899999888765 2
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
.++.+++++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++............. ...+++
T Consensus 188 ~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~---------~~~~~i 258 (420)
T 4h51_A 188 PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFAR---------RGIEVL 258 (420)
T ss_dssp CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH---------TTCCCE
T ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHh---------hCceEE
Confidence 44677788889999999999999999999999999999999999999877643101111222222 346899
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHH------HHH--hcccCCCChHHHHHHHHHcCCchhh---HHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSA------ATK--MSSFGLVSSQTQYLLSRMLSDKKFT---CNYMKENRKRLR 335 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~------~~~--~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~ 335 (464)
++.||||.|+++|+|+||++++.+..... +.. ...+.+++...|.++..++.++.+. ++.++.++++++
T Consensus 259 ~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~ 338 (420)
T 4h51_A 259 LAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIR 338 (420)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754432221 111 2234456778999999999987542 445667889999
Q ss_pred HHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEee
Q 037587 336 KRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFA 411 (464)
Q Consensus 336 ~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~ 411 (464)
++|+.+.+.|++.| |.++.+++|||.|+.++. +.++ +|+++||++.|++ |||++
T Consensus 339 ~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~-----------e~v~-~L~e~~Vy~~~~g----------Ris~A 396 (420)
T 4h51_A 339 TMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSK-----------AQCE-YCQNHNIFITVSG----------RANMA 396 (420)
T ss_dssp HHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCH-----------HHHH-HHHHTTEECCTTC----------EEEGG
T ss_pred HHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcCH-----------HHHH-HHHhCCEEEcCCC----------EEEec
Confidence 99999999999986 444567889999987753 2333 4578999998752 99999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhC
Q 037587 412 NITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 412 ~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.++++.++.++++|.+++++.+
T Consensus 397 gl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 397 GLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp GCCHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999987654
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=339.71 Aligned_cols=335 Identities=16% Similarity=0.199 Sum_probs=249.0
Q ss_pred CCCCceEEeecccccccHH-HHHHHHHhhhhhHHhhhcccccccccccCCCCCCc-----HHHHHHHHHHHHHHcCCCCC
Q 037587 33 HNPSGIIQMGLAENQLSFD-LLESWLASNQEAVELKRNGESLFRELALFQDYHGF-----PDAKKELVKLMARIRGNKVK 106 (464)
Q Consensus 33 ~~~~~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~-----~~lr~~ia~~~~~~~~~~~~ 106 (464)
.+..++|+|+.+.+.++.+ .+.+++..... .........|++..|. ++||++||++++. +| +.
T Consensus 19 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~-~g--~~ 87 (391)
T 3bwn_A 19 PMSDFVVNLDHGDPTAYEEYWRKMGDRCTVT--------IRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGV-VG--NA 87 (391)
T ss_dssp CTTTSCEECSSCCCGGGHHHHHHTGGGSCEE--------ECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHH-HC--SB
T ss_pred cCCCCeeEcCCCCCCCCCCHHHHHhHHHHhh--------cCccchhhcCCCCCCcccccCHHHHHHHHHHHHh-cC--CC
Confidence 3566789999998876643 23332211100 0000134679999998 9999999999984 44 45
Q ss_pred CCC-CcEEEeCChHHHHHHHHHHhcCCCC----eEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHH
Q 037587 107 FDP-NKLVLTAGSTAANETLMFCLADPGD----AFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181 (464)
Q Consensus 107 ~~~-~~i~it~G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 181 (464)
+++ ++|++|+|+++++.+++.+++++|| .|++++|+|+.|...++.. |++++.++++.+ ++.
T Consensus 88 ~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~d~~-~l~----------- 154 (391)
T 3bwn_A 88 ATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYV-RSGMYKWEGDAW-GFD----------- 154 (391)
T ss_dssp CCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTT-CBTTEEEEEEST-TCC-----------
T ss_pred CCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHc-CCeEEEecCCHH-HcC-----------
Confidence 666 6999999999999999999999999 9999999999999988876 999988887642 222
Q ss_pred HHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCC
Q 037587 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261 (464)
Q Consensus 182 ~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (464)
.+++++|+++|||||||.+++ +|++.+..++++||+||+|.+ . . +.++. . .
T Consensus 155 -----~~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~-~---~~~l~-~-----------~ 205 (391)
T 3bwn_A 155 -----KKGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---P-H---YTPIT-R-----------R 205 (391)
T ss_dssp -----CCSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---T-T---TSCCC-C-----------C
T ss_pred -----CCCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---C-C---CCccc-c-----------C
Confidence 027899999999999999996 344422223399999999973 1 1 11211 1 1
Q ss_pred CCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCch-h------hHHHHHHHHH
Q 037587 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKK-F------TCNYMKENRK 332 (464)
Q Consensus 262 ~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~-~------~~~~~~~~~~ 332 (464)
.+++++++||||+||++|+|+||+++.++.+.+.+..... .++++.+.|.++..++++.. + ..+++++.++
T Consensus 206 ~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (391)
T 3bwn_A 206 QDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGRE 285 (391)
T ss_dssp BCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHH
T ss_pred CCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHH
Confidence 2689999999999999999999999745556565555443 35688999999999998642 1 1456888999
Q ss_pred HHHHHHHHHHHHHHhC-CCeeecC-------------CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 333 RLRKRKEMLVSGLKVA-GIRCLKS-------------NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 333 ~~~~~~~~l~~~l~~~-g~~~~~~-------------~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
.++++++.+.+.|+++ |+.+..+ .+|+|+|++++.. +.+..+++++||.++||+.|
T Consensus 286 ~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~----------~~~~~~l~~~gV~v~pg~~f 355 (391)
T 3bwn_A 286 MMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE----------TDLVSELRRHKVMSRAGERC 355 (391)
T ss_dssp HHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----------CCHHHHHHHTTEECEEGGGG
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH----------HHHHHHHHHCCEEEccCCCC
Confidence 9999999999999987 5665432 4556999999741 13455667889999999999
Q ss_pred CCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 399 HCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 399 ~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
+. .++++|||++. +++++++++++|++++++.
T Consensus 356 g~-~~~~iRis~~~-~~e~i~~~~~~L~~~~~~~ 387 (391)
T 3bwn_A 356 GS-DKKHVRVSMLS-REDVFNVFLERLANMKLIK 387 (391)
T ss_dssp TC-CTTEEEEESCS-CHHHHHHHHHHHHSCC---
T ss_pred CC-CCCEEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 75 56899999996 8899999999999887543
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=335.74 Aligned_cols=342 Identities=15% Similarity=0.174 Sum_probs=263.2
Q ss_pred CceEEeecccc--c----ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 36 SGIIQMGLAEN--Q----LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 36 ~~~i~l~~~~n--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
.++|||+.+.. + .+++.+.+++.+.... .....|++..|..++|+++|+++... .+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~-----~~~~ 89 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-----------ETTKTYAGLSGEPEFQKAMGELILGD-----GLKS 89 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH-----------CCCCCCCCSSCCHHHHHHHHHHHHGG-----GCCG
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCC-----------cccCCCCCCCCcHHHHHHHHHHHhCC-----CCCc
Confidence 46799999872 1 3457777777664211 13557988888999999999998421 2367
Q ss_pred CcEEE--eCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 110 NKLVL--TAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 110 ~~i~i--t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
++|++ |+|+++++..++.++.. +||+|+++.|+|+++...+... |.+++.+++++++++.+|++.+++.+++.
T Consensus 90 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 166 (394)
T 2ay1_A 90 ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAA-- 166 (394)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH-TCCEEEEECEETTTTEECHHHHHHHHHTC--
T ss_pred ccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCceEEEecccccCCccCHHHHHHHHHhC--
Confidence 89999 99999999999988754 9999999999999998888877 99999999864456889999999988641
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
.++++++++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++.. ...++..+.. ..+++
T Consensus 167 -~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~---------~~~~~ 235 (394)
T 2ay1_A 167 -KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEE-DAAGTRLIAS---------RIPEV 235 (394)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHH-HHHHHHHHHH---------HCSSE
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCccc-chHHHHHHhh---------cCCCE
Confidence 123567778999999999999999999999999999999999999986554200 1123332322 12578
Q ss_pred EEEcCCCcCCCCCccEEEEEEe--cCHHHH----HHHHH--hcccCCCChHHHHHHHHHcCCchh---hHHHHHHHHHHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYS--NNERVV----SAATK--MSSFGLVSSQTQYLLSRMLSDKKF---TCNYMKENRKRL 334 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~--~~~~~~----~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~ 334 (464)
++++||||.+|++|+|+||+++ +++.+. ..+.. ...+..++++.|.++..++++... ..+++++.++.+
T Consensus 236 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 315 (394)
T 2ay1_A 236 LIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGM 315 (394)
T ss_dssp EEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 444332 22221 123344588999999999987621 145688889999
Q ss_pred HHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe
Q 037587 335 RKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF 410 (464)
Q Consensus 335 ~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~ 410 (464)
+++++.+.+.|++++ +++.++++|+|+|++++. +.+..+++++||.+.|| +||++
T Consensus 316 ~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gi~v~~~----------~Ris~ 374 (394)
T 2ay1_A 316 LRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGD----------SRINI 374 (394)
T ss_dssp HHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEG
T ss_pred HHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEe
Confidence 999999999998875 777778888999998752 23466677889999874 59999
Q ss_pred ecCCHHHHHHHHHHHHHH
Q 037587 411 ANITEETLQVALQRIKVF 428 (464)
Q Consensus 411 ~~~~~e~l~~~l~~l~~~ 428 (464)
+..+++++++++++|+++
T Consensus 375 ~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 375 AGLNDNTIPILARAIIEV 392 (394)
T ss_dssp GGCCTTTHHHHHHHHHHH
T ss_pred ecCCHhhHHHHHHHHHHc
Confidence 866899999999999875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=316.65 Aligned_cols=323 Identities=19% Similarity=0.294 Sum_probs=251.8
Q ss_pred CCCCCCCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC
Q 037587 28 PYDQLHNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK 106 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~ 106 (464)
+|.+...+.++|+|+.|+|+++ ++.+.+++.+.... .....|++. +..++|+++|+++++. .
T Consensus 11 ~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~-~~~~lr~~la~~~~~~-----~ 73 (335)
T 1uu1_A 11 AYPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNS-----------DALRIYYDS-PDEELIEKILSYLDTD-----F 73 (335)
T ss_dssp SCCCCCCCCCSEEESSCCCSSCCCHHHHHHHHHTCCG-----------GGGGSCCCS-SCHHHHHHHHHHHTCS-----S
T ss_pred CCCCCCCCCcceECCCCCCCCCCCHHHHHHHHHHhhh-----------hhhhcCCCC-chHHHHHHHHHHcCCC-----C
Confidence 3444333457899999999774 56677766654210 234568764 6899999999999642 2
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
+++++|++|+|+++++..++.++ ||+|+++ |+|+++...++.. |++++.++++ ++|.+|++++ +
T Consensus 74 ~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l-----~---- 137 (335)
T 1uu1_A 74 LSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAKAV-GAKFLEVPLT--KDLRIPEVNV-----G---- 137 (335)
T ss_dssp CCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHHHH-TCEEEECCCC--TTSCCCCCCC-----C----
T ss_pred CCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHHHc-CCeEEEeccC--CCCCCCHHHc-----C----
Confidence 56889999999999999999988 8999999 9999998888776 9999999876 3467787776 1
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
++++|++++||||||.++|.+++++++++| | ++|+||+|.++.+ . .+.+ +.. ..++++
T Consensus 138 --~~~~v~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~--~--~~~~---~~~---------~~~~~i 195 (335)
T 1uu1_A 138 --EGDVVFIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHG--E--SYVD---FLK---------KYENLA 195 (335)
T ss_dssp --TTEEEEEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHC--C--CCGG---GGG---------TCSSEE
T ss_pred --CCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcc--h--hHHH---Hhh---------hCCCEE
Confidence 678999999999999999999999999987 7 8999999997432 2 1122 222 236899
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
+++||||.+|++|+|+||+++ ++.+.+.+......++++++.|.++.+++++.+ ++++.++.++++++++.+.|+
T Consensus 196 ~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~ 270 (335)
T 1uu1_A 196 VIRTFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALR 270 (335)
T ss_dssp EEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhcCCcccCeEEEEe-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 555666666655556788999999999998743 467778888889999999998
Q ss_pred hCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHH
Q 037587 347 VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426 (464)
Q Consensus 347 ~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 426 (464)
++|+.+.++. ++|+|++++. .+..+++..++ ++||.++|+ ++++||+++ +++++++++++|+
T Consensus 271 ~~g~~~~~~~-~~~~~~~~~~-------~~~~~~~~~l~-~~gi~v~~~-------~~~iRis~~--~~~~i~~~~~~l~ 332 (335)
T 1uu1_A 271 EMGYRITDSR-GNFVFVFMEK-------EEKERLLEHLR-TKNVAVRSF-------REGVRITIG--KREENDMILRELE 332 (335)
T ss_dssp HHTCCBCCCC-SSEEEEECCT-------HHHHHHHHHHH-HHTEEEEEE-------TTEEEEECC--CHHHHHHHHHHHH
T ss_pred HCCcEEcCCC-CeEEEEECCC-------CCHHHHHHHHH-HCCEEEEEC-------CCeEEEEeC--CHHHHHHHHHHHH
Confidence 8888776555 5689999874 12335667765 579999982 568999997 4788999999987
Q ss_pred HH
Q 037587 427 VF 428 (464)
Q Consensus 427 ~~ 428 (464)
++
T Consensus 333 ~~ 334 (335)
T 1uu1_A 333 VF 334 (335)
T ss_dssp CC
T ss_pred hh
Confidence 54
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=297.29 Aligned_cols=344 Identities=14% Similarity=0.073 Sum_probs=257.9
Q ss_pred CCCceEEeecccc-cc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc
Q 037587 34 NPSGIIQMGLAEN-QL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 34 ~~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~ 111 (464)
++.++|||+.+.+ .+ +++.+.+++.+..... ......|++..|..++++++++++.+.++ .++
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~~ 105 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKY---------GTGCAGSRFLNGTLDIHVELEEKLSAYVG------KEA 105 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHH---------CSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CSE
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHHHc---------CCCCCCcCcccCCcHHHHHHHHHHHHHhC------CCc
Confidence 3457899999987 44 4566666666542210 01223466667888999999999988765 358
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
+++|+|+++++..++.+++++||.|+++.|+|+.+...+... |++++.++. +|++.+++.+++.. ..+++
T Consensus 106 v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~-g~~~~~v~~-------~d~~~l~~~l~~~~--~~~~~ 175 (398)
T 3a2b_A 106 AILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLS-FSKVIKYGH-------NNMEDLRAKLSRLP--EDSAK 175 (398)
T ss_dssp EEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHS-SSEEEEECT-------TCHHHHHHHHHTSC--SSSCE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHc-CCceEEeCC-------CCHHHHHHHHHhhc--cCCce
Confidence 999999999999999999999999999999999998888877 999999885 47899998886411 01688
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc-EEEEcC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR-IHIVYS 270 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-vi~l~S 270 (464)
+|++++|+||||.+++ +++|+++|+++|+++|+||+|+.+.++.. ..++.+... ..++ +++++|
T Consensus 176 ~v~~~~~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~---------~~~~~di~~~s 240 (398)
T 3a2b_A 176 LICTDGIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK---GAGTASHFG---------LNDDVDLIMGT 240 (398)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG---GCCHHHHHT---------CGGGCSEEEEE
T ss_pred EEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC---CCchHhhcC---------CCcCCeEEEec
Confidence 9999999999999987 77888899999999999999987655422 123322211 1134 689999
Q ss_pred CCcCCCCCccEEEEEEecCHHHHHHHHHh-c--ccCCCChHHHH-HHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 271 LSKDFSMPGFRVGMIYSNNERVVSAATKM-S--SFGLVSSQTQY-LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~--~~~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
|||.+|++| ||++++ +.+.+.+... . .....+++.|. ++..+++.. +++++.++.++++++++.+.|+
T Consensus 241 ~sK~~~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~ 312 (398)
T 3a2b_A 241 FSKSLASLG---GFVAGD-ADVIDFLKHNARSVMFSASMTPASVASTLKALEII----QNEPEHIEKLWKNTDYAKAQLL 312 (398)
T ss_dssp SSSTTCSSC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH----HHCTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCC---cEEEeC-HHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHH
Confidence 999999778 999995 4555545442 2 22234556665 445666542 2356778888999999999999
Q ss_pred hCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeec-CCHHHHHHHHHH
Q 037587 347 VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFAN-ITEETLQVALQR 424 (464)
Q Consensus 347 ~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~-~~~e~l~~~l~~ 424 (464)
+.|+++.++.+ +|+|+.++.. ....+++..|++ +||.+.||..|... ..+++||+++. .+++++++++++
T Consensus 313 ~~g~~~~~~~g-~~~~~~~~~~------~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~ 384 (398)
T 3a2b_A 313 DHGFDLGATES-PILPIFIRSN------EKTFWVTKMLQD-DGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEK 384 (398)
T ss_dssp HTTCCBCSCCS-SEEEEECCCH------HHHHHHHHHHHH-TTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHH
T ss_pred hcCCCcCCCCC-CEEEEEcCCH------HHHHHHHHHHHH-CCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHH
Confidence 98988877765 6999998742 123357777765 59999999887532 35789999986 689999999999
Q ss_pred HHHHHHhhC
Q 037587 425 IKVFAQSCN 433 (464)
Q Consensus 425 l~~~l~~~~ 433 (464)
|++++++..
T Consensus 385 l~~~l~~~~ 393 (398)
T 3a2b_A 385 MVKVFKQAE 393 (398)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHhC
Confidence 999987654
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=285.87 Aligned_cols=345 Identities=12% Similarity=0.078 Sum_probs=245.4
Q ss_pred CCceEEeeccccccc---HHHHHHHHHhhhhhHHhhhcccccccccccC--CCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 35 PSGIIQMGLAENQLS---FDLLESWLASNQEAVELKRNGESLFRELALF--QDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
...+|||+.+ |+++ ++.+.+++.+.... . +. .....+| +...+..++++.++++++ . +
T Consensus 42 g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~--~---~~--~~~~~~~~~g~~~~~~~l~~~la~~~~--------~-~ 104 (399)
T 3tqx_A 42 EKEVLNFCAN-NYLGLADHPALIKTAQTVVEQ--Y---GF--GMASVRFICGTQTIHKELEKDISEFLG--------T-D 104 (399)
T ss_dssp TEEEEECSSC-CTTSCTTCHHHHHHHHHHHHH--H---CS--CCCSCCCCCCCBHHHHHHHHHHHHHHT--------C-S
T ss_pred CeeEEEeecc-CcccccCCHHHHHHHHHHHHH--h---CC--CCCCcCccccCchHHHHHHHHHHHHHC--------C-C
Confidence 4568999998 5543 46666666554221 0 00 0001122 222335788888888875 2 3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
++|++++| ++++..++.+++++||.|+++.|+|+.+...++.. |.+++.++. .|++.+++.+++....+.+
T Consensus 105 ~~i~~~sG-t~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 175 (399)
T 3tqx_A 105 DTILYSSC-FDANGGLFETLLGPEDAIISDELNHASIIDGIRLC-KAQRYRYKN-------NAMGDLEAKLKEADEKGAR 175 (399)
T ss_dssp EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSC-CSEEEEECT-------TCTTHHHHHHHHHHTTTCS
T ss_pred cEEEECch-HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCceeEeCC-------CCHHHHHHHHHhhhccCCC
Confidence 56666665 67999999999999999999999999998888876 999999885 3678899988765443447
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++|++++|+||||.+++ +++|+++|+++|+++|+||+|+...++.. ..+...... . ..+.+++++
T Consensus 176 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~-~-------~~~~di~~~ 241 (399)
T 3tqx_A 176 FKLIATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGEN---GRGTPEYCG-V-------ADRVDILTG 241 (399)
T ss_dssp SEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT---SCCHHHHHT-C-------TTCCSEEEE
T ss_pred ceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCchHHhhC-C-------CCCCcEEEe
Confidence 899999999999999998 78899999999999999999963323322 122222321 0 124568899
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHHHh-ccc---CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 345 (464)
||||++| |++.||+++++ .+.+.+... ..+ .+.+++.+.++...++.. .++.++.++.++++++++.+.|
T Consensus 242 s~sK~~~--g~~gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L 315 (399)
T 3tqx_A 242 TLGKALG--GASGGYTSGHK-EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL---KTEGPQLRKQLQENSRYFRAGM 315 (399)
T ss_dssp ESSSSSC--SSCCEEEEECH-HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhcc--cCceEEEEcCH-HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHH
Confidence 9999997 34449999954 454544443 222 245666666666666532 2446788889999999999999
Q ss_pred HhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHH
Q 037587 346 KVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-CNEPGWFRICFAN-ITEETLQVALQ 423 (464)
Q Consensus 346 ~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~ 423 (464)
++.|+++.++.++ |+|+.++.. ....+++..++ ++||.+.|+..+. ..+.+++||+++. .++++++++++
T Consensus 316 ~~~g~~~~~~~~~-~~~~~~~~~------~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 387 (399)
T 3tqx_A 316 EKLGFQLVPGNHP-IIPVMLGDA------QLATNMADHLL-QEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIE 387 (399)
T ss_dssp HHHTCCBCCCSSS-EEEEEEECH------HHHHHHHHHHH-HTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred HHcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHH-HCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHH
Confidence 9999988877765 788888642 22345777776 4799999875443 2345699999974 68999999999
Q ss_pred HHHHHHHhhC
Q 037587 424 RIKVFAQSCN 433 (464)
Q Consensus 424 ~l~~~l~~~~ 433 (464)
+|++++++..
T Consensus 388 ~l~~~~~~~~ 397 (399)
T 3tqx_A 388 AFGQVGKKLG 397 (399)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999998764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=283.49 Aligned_cols=342 Identities=13% Similarity=0.089 Sum_probs=245.0
Q ss_pred CCCceEEeeccccccc---HHHHHHHHHhhhhhHHhhhcccccccccccCC--CCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 34 NPSGIIQMGLAENQLS---FDLLESWLASNQEAVELKRNGESLFRELALFQ--DYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
+...+|||+.+ |+++ ++.+.+++.+.... . +. ......|+ ...+..++|++|+++++ ++
T Consensus 43 ~g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~--~---~~--~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~ 106 (401)
T 1fc4_A 43 DGSHVINFCAN-NYLGLANHPDLIAAAKAGMDS--H---GF--GMASVRFICGTQDSHKELEQKLAAFLG--------ME 106 (401)
T ss_dssp TSCEEEECCCS-CTTSCTTCHHHHHHHHHHHHH--H---CS--CCCSCHHHHCCBHHHHHHHHHHHHHHT--------CS
T ss_pred CCccEEEeecc-CcccccCCHHHHHHHHHHHHH--h---CC--CCCCCCcccCCcHHHHHHHHHHHHHhC--------CC
Confidence 45678999998 5563 56666666654211 0 00 00011232 13456899999999985 44
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCC
Q 037587 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNL 188 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 188 (464)
++|++++| ++++..++.+++++||.|+++.|+|+.+...+... |++++.++. .|++.+++.+++....+.
T Consensus 107 -~~i~~~sG-s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~~~~~~ 176 (401)
T 1fc4_A 107 -DAILYSSC-FDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYAN-------NDMQELEARLKEAREAGA 176 (401)
T ss_dssp -EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTS-CSEEEEECT-------TCHHHHHHHHHHHHHTTC
T ss_pred -cEEEeCCh-HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHc-CCceEEECC-------CCHHHHHHHHHHhhccCC
Confidence 66666666 66888899999999999999999998787777766 999998873 478999998875432222
Q ss_pred ceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc-cccc-CCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 189 KVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS-GTVF-DSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 189 ~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~-~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ ++.+ .+. .+.+...+ ..+.++
T Consensus 177 ~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~--~~~~~~~~-----------~~~~di 240 (401)
T 1fc4_A 177 RHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGR--GSHEYCDV-----------MGRVDI 240 (401)
T ss_dssp SSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC--CHHHHTTC-----------TTCCSE
T ss_pred CceEEEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCC--ccHHHcCC-----------CcCCcE
Confidence 6789999999999999998 7888899999999999999996 6432 222 22221222 124578
Q ss_pred EEcCCCcCC-CCCccEEEEEEecCHHHHHHHHHhc-cc---CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHH
Q 037587 267 IVYSLSKDF-SMPGFRVGMIYSNNERVVSAATKMS-SF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341 (464)
Q Consensus 267 ~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 341 (464)
+++||||.+ |.+| ||++++ +.+.+.+.... .+ .+.+.+.+.++..+++.... .++.++.++++++++
T Consensus 241 ~~~s~sK~~~~~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l 312 (401)
T 1fc4_A 241 ITGTLGKALGGASG---GYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA----GSELRDRLWANARQF 312 (401)
T ss_dssp EEEESSSTTCSSSC---EEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHH
T ss_pred EEecchhhccCCCC---EEEEcC-HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHH
Confidence 899999999 6555 999995 55555554432 12 25678888888877754221 356677788889999
Q ss_pred HHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeec-CCHHHHH
Q 037587 342 VSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFAN-ITEETLQ 419 (464)
Q Consensus 342 ~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~-~~~e~l~ 419 (464)
.+.|+++|+++.++ .+.|+|++++.. ....+++..|+ ++||.++||..|+.. ..+++||+++. .++++++
T Consensus 313 ~~~L~~~g~~~~~~-~~~~~~~~~~~~------~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~ 384 (401)
T 1fc4_A 313 REQMSAAGFTLAGA-DHAIIPVMLGDA------VVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQIT 384 (401)
T ss_dssp HHHHHHTTCCBCCS-SSSEEEEEEECH------HHHHHHHHHHH-HTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHH
T ss_pred HHHHHHcCCcccCC-CCCEEEEEcCCh------HHHHHHHHHHH-HCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHH
Confidence 99999888888754 456889988642 22335666665 569999999877542 24689999985 6899999
Q ss_pred HHHHHHHHHHHhhC
Q 037587 420 VALQRIKVFAQSCN 433 (464)
Q Consensus 420 ~~l~~l~~~l~~~~ 433 (464)
+++++|++++++.+
T Consensus 385 ~~~~~l~~~~~~~~ 398 (401)
T 1fc4_A 385 RAVEAFTRIGKQLG 398 (401)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998764
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=279.78 Aligned_cols=298 Identities=13% Similarity=0.147 Sum_probs=231.2
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEEe
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPN-KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v~ 162 (464)
..++++++++++.+.+| ++++ +|++|+|+++++..++.+++++||+|++++|+|++ +...+... |++++.++
T Consensus 65 ~~~~~~~~~~~la~~~g----~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 139 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQ----TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRY-GADVRTIS 139 (393)
T ss_dssp HHHHHHHHHHHHHHHHT----CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHc-CCceEEEe
Confidence 46788888888887766 5677 99999999999999999999999999999999998 77777766 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
++. ++.+|++.|++.+++. ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|. ++.. +
T Consensus 140 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~---~g~~--~ 204 (393)
T 1vjo_A 140 KPW--GEVFSLEELRTALETH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS---LGGV--P 204 (393)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT---TTTS--C
T ss_pred cCC--CCCCCHHHHHHHHhhC-----CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc---ccCc--C
Confidence 874 5678999999998752 5788999999999999987 6778889999999999999998 3322 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh---------------------cc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM---------------------SS 301 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~---------------------~~ 301 (464)
.++ . ..+.++++.|+||.++.+| |+||++++++ +.+.+... ..
T Consensus 205 -~~~----~---------~~~~di~~~s~sK~l~~~~-~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
T 1vjo_A 205 -IFL----D---------AWGVDLAYSCSQKGLGCSP-GASPFTMSSR-AIEKLQRRRTKVANWYLDMNLLGKYWGSERV 268 (393)
T ss_dssp -CCT----T---------TTTCSEEECCSSSTTCSCS-SCEEEEECHH-HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCC
T ss_pred -Ccc----c---------ccCccEEEEcCcccccCCC-ceEEEEECHH-HHHHHhccCCCCCceecCcHhhhhhhccCCC
Confidence 121 1 1256788999999998777 9999999554 44444221 11
Q ss_pred cC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc---cEEEEEecCcccccCChhHH
Q 037587 302 FG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNA---GLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 302 ~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~f~~~~l~~~~~~~~~~~~ 377 (464)
.+ +.+.+.|.++..+++... ..++++.++.++++++++.+.|++.|+++..+.+ +.++++.++.... .
T Consensus 269 ~~g~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~ 340 (393)
T 1vjo_A 269 YHHTAPINLYYALREALRLIA--QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVD------G 340 (393)
T ss_dssp CCSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCC------H
T ss_pred CCCCCCHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCC------H
Confidence 12 567788888888876421 3346778888999999999999988888877654 3477888763211 2
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHH
Q 037587 378 KELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-AN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l 429 (464)
.+++..|++++||.++||..|. .++++||++ +. .+++++++++++|++++
T Consensus 341 ~~~~~~l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 341 KAVARRLLNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 3577777655599999998764 368999995 33 46778999999999876
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=277.37 Aligned_cols=336 Identities=10% Similarity=0.053 Sum_probs=239.2
Q ss_pred CCceEEeecccc-cc-cHHHHHHHHHhhhhhHHhhhcccccccccccC--CCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 35 PSGIIQMGLAEN-QL-SFDLLESWLASNQEAVELKRNGESLFRELALF--QDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 35 ~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
+..+|||+.++| .+ +++.+.+++.+..... +. ......| ....+..++|++++++++ ++ +
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~-----~~--~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~-~ 101 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQF-----GI--GSGGSGHVSGYSVVHQALEEELAEWLG--------YS-R 101 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHH-----CS--CCCSBTTTTCCCHHHHHHHHHHHHHHT--------CS-E
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHh-----CC--CCCCcCcccCChHHHHHHHHHHHHHhC--------CC-c
Confidence 456899999886 32 4466666666542210 00 0011234 333567889999999985 33 5
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
.|++++| ++++..++.+++++||.|+++.|+|+.+...+... |++++.+|. .|++.+++.+++. .+++
T Consensus 102 ~i~~~sG-t~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~---~~~~ 169 (384)
T 1bs0_A 102 ALLFISG-FAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS-PSQLRRFAH-------NDVTHLARLLASP---CPGQ 169 (384)
T ss_dssp EEEESCH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTS-SSEEEEECT-------TCHHHHHHHHHSC---CSSC
T ss_pred EEEeCCc-HHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHc-CCCEEEeCC-------CCHHHHHHHHHhc---CCCC
Confidence 5666666 89999999999999999999999999888888776 999998874 3788998887641 1136
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
++|++++|+||||.+++ +++|+++|+++|+++|+||+|+.+.+... ..++..... . ...++++|
T Consensus 170 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~---------~-~~di~~~s 233 (384)
T 1bs0_A 170 QMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQ---GRGSCWLQK---------V-KPELLVVT 233 (384)
T ss_dssp EEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGG---GCCHHHHTT---------C-CCSEEEEE
T ss_pred eEEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCC---CCchHHhcC---------C-CCcEEEee
Confidence 88899999999999998 67888999999999999999986544311 011111211 1 23388999
Q ss_pred CCcCCCCCccEEEEEEecCHHHHHHHHHhc-cc---CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 271 LSKDFSMPGFRVGMIYSNNERVVSAATKMS-SF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
|||++|++| ||++++ +.+.+.+.... .+ ...+++.+.++.++++... ..+.++.++.++++++++.+.|+
T Consensus 234 ~sK~~~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~ 307 (384)
T 1bs0_A 234 FGKGFGVSG---AAVLCS-STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR--SDEGDARREKLAALITRFRAGVQ 307 (384)
T ss_dssp SSSTTSSCC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhccC---cEEEeC-HHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHH
Confidence 999999777 999995 55555444432 22 1467788877777765322 01456778888999999999999
Q ss_pred hCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEeec-CCHHHHHHHHHH
Q 037587 347 VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC-NEPGWFRICFAN-ITEETLQVALQR 424 (464)
Q Consensus 347 ~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~~l~~ 424 (464)
++|+++.++.+ .|+|++++.. ....+++..++ ++||.++||..|+. ...+++||+++. .+++++++++++
T Consensus 308 ~~g~~~~~~~~-~~~~~~~~~~------~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~ 379 (384)
T 1bs0_A 308 DLPFTLADSCS-AIQPLIVGDN------SRALQLAEKLR-QQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEV 379 (384)
T ss_dssp TSSCEECSCCS-SBCCEEEESH------HHHHHHHHHHH-HTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHH
T ss_pred hcCCcccCCCC-CEEEEEeCCH------HHHHHHHHHHH-HCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 98988876544 5778887632 22335777776 56999999987753 234789999986 589999999999
Q ss_pred HHHH
Q 037587 425 IKVF 428 (464)
Q Consensus 425 l~~~ 428 (464)
|+++
T Consensus 380 l~~~ 383 (384)
T 1bs0_A 380 LHGN 383 (384)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9864
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=277.87 Aligned_cols=339 Identities=15% Similarity=0.146 Sum_probs=240.1
Q ss_pred EEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCCh
Q 037587 39 IQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGS 118 (464)
Q Consensus 39 i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~ 118 (464)
+-|+.+.+..+++.+.+++.+..... . +.........|....+..+++++++++++ +++++|++|+|+
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~ 70 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREK-Y---GNPNSAHGMGIEANLHMEKAREKVAKVLG--------VSPSEIFFTSCA 70 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTC-C---CCTTCSSHHHHHHHHHHHHHHHHHHHHHT--------SCGGGEEEESCH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhc-C---CCCccccHHHHHHHHHHHHHHHHHHHHcC--------CCCCeEEEECCH
Confidence 45666666666666776666542110 0 00000000112233456889999999985 577899999999
Q ss_pred HHHHHHHHHHhc----CCCCeEEEcCCCCCChhhhc---ccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 119 TAANETLMFCLA----DPGDAFLLPTPYYPGFDRDL---KWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 119 ~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
++++..++.++. ++||+|+++.|+|+.+...+ ... |++++.+++++ ++.+|+++|++.+++ +++
T Consensus 71 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~ 141 (384)
T 1eg5_A 71 TESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK-GFKVKYVPVDS--RGVVKLEELEKLVDE------DTF 141 (384)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT-TCEEEECCBCT--TSCBCHHHHHHHCCT------TEE
T ss_pred HHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhc-CCEEEEEccCC--CCccCHHHHHHHhCC------CCe
Confidence 999999999997 79999999999998776554 555 99999999864 567899999988754 789
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC--eEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKR--IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~--~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+|++++|+||||.+++ +++|.++|+++| +++|+||+|+ |+.. . .++. ..+.++++.
T Consensus 142 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~---~~~~--~-~~~~-------------~~~~di~~~ 199 (384)
T 1eg5_A 142 LVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT---IGKI--P-FSLE-------------KLEVDYASF 199 (384)
T ss_dssp EEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT---TTTS--C-CCCT-------------TTCCSEEEE
T ss_pred EEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh---cCCc--c-cCch-------------hcCCCEEEe
Confidence 9999999999999998 577888888999 9999999997 4332 1 1211 114568899
Q ss_pred CCCcCCCCCccEEEEEEecCHH-HHHHHHH-----hcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNNER-VVSAATK-----MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~-~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
|+||.+|++| +||++++++. +...+.. ....++.+.+.|.++..+++.. .+++++.++.++++++++.+
T Consensus 200 s~sK~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~ 274 (384)
T 1eg5_A 200 SAHKFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA---VEELSEAAKHMEKLRSKLVS 274 (384)
T ss_dssp EGGGGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHH
T ss_pred cHHHhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHH
Confidence 9999999888 7999996652 1211111 1123457788888888877652 34577788888999999999
Q ss_pred HHHhCCCeeecCC---ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-----------------CC
Q 037587 344 GLKVAGIRCLKSN---AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-----------------EP 403 (464)
Q Consensus 344 ~l~~~g~~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-----------------~~ 403 (464)
.|++.|+++..+. .+.++++.++.. +..++...| .++||.+.+|..|+.. ..
T Consensus 275 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 346 (384)
T 1eg5_A 275 GLMNLGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQ 346 (384)
T ss_dssp HHHTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHH
T ss_pred HhCCCCeEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHH-hhCCeEEeccccccCCCCcchHHHHHcCCChhhcC
Confidence 9998888876542 124677777531 123466665 5789999999877532 13
Q ss_pred CeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 404 GWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 404 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+++||+++. .+++++++++++|++++++.+
T Consensus 347 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 347 GAIRISLCKYNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp HEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 689999985 689999999999999998764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=275.35 Aligned_cols=301 Identities=16% Similarity=0.160 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFD-PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~-~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v~~ 163 (464)
.++++++++++.+.+| ++ ++++++|+|+++++..++.+++++||+|++++|+|++ +...+... |++++.++.
T Consensus 52 ~~~~~~~~~~la~~~g----~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~ 126 (386)
T 2dr1_A 52 RKVHMDTVERLREFLE----VEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESN-GRKAVVLEY 126 (386)
T ss_dssp HHHHHHHHHHHHHHHT----CSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhC----CCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHh-CCceEEEec
Confidence 6788888888887766 33 6789999999999999999999999999999999987 77777766 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
+. ++.+|+++|++.+++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+.
T Consensus 127 ~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~------ 191 (386)
T 2dr1_A 127 EP--GKAVKPEDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD------ 191 (386)
T ss_dssp CT--TCCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC------
T ss_pred CC--CCCCCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc------
Confidence 64 567899999999864 237899999999999999976 688889999999999999999853221
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHH----------------HH----hcccC
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA----------------TK----MSSFG 303 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~----------------~~----~~~~~ 303 (464)
.++. ..+.++++.|+||.++.++ ++||++++++ +.+.+ .. ....+
T Consensus 192 ~~~~-------------~~~~di~~~s~sK~~~~~~-g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (386)
T 2dr1_A 192 IKFD-------------KWGLDVVFSSSQKAFGVPP-GLAIGAFSER-FLEIAEKMPERGWYFDIPLYVKYLKEKESTPS 256 (386)
T ss_dssp CCTT-------------TTTCSEEEEETTSTTCCCS-SCEEEEECHH-HHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSS
T ss_pred cccc-------------ccCCcEEEEeccccccCCC-ceEEEEECHH-HHHHHhcCCCCceEEeHHHHHHhhccCCCCCC
Confidence 1211 1256788999999998652 4899999654 43332 11 12234
Q ss_pred CCChHHHHHHHHHcCCchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ccEEEEEecCcccccCChhHHH
Q 037587 304 LVSSQTQYLLSRMLSDKKFTCN--YMKENRKRLRKRKEMLVSGLKVAGIRCLKSN---AGLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 304 ~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~f~~~~l~~~~~~~~~~~~~ 378 (464)
+.+.+.|.++..+++.. .+ .+++.++.++++++++.+.|+++|+++..+. .+.++|+.++.... ..
T Consensus 257 ~~~~~~~~a~~~~l~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~ 327 (386)
T 2dr1_A 257 TPPMPQVFGINVALRII---EKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGIK------GD 327 (386)
T ss_dssp CCCHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCC------HH
T ss_pred CCCHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCC------HH
Confidence 56778888887777642 22 2567788888999999999998888887664 35689999874211 23
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 379 ELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
+++..|++ +||.++||..+. ..+++||+++. .+++++++++++|++++++...
T Consensus 328 ~~~~~l~~-~gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 381 (386)
T 2dr1_A 328 EVYEAMRK-RGFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREVINELKK 381 (386)
T ss_dssp HHHHHHHH-TTEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 56777765 599999998653 35799999986 6899999999999999887643
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=278.93 Aligned_cols=340 Identities=15% Similarity=0.163 Sum_probs=242.8
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCC--CCCcHHHHHHHHHHHHHHcCCCCCC-CCCcE
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQD--YHGFPDAKKELVKLMARIRGNKVKF-DPNKL 112 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~~~~~~~-~~~~i 112 (464)
.++|+|+.+.+..+++.+.+++.+..... .+ ........|++ ..+..++|++++++++ . ++++|
T Consensus 27 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~----~~-~~~~~~~~y~~~~~~~~~~l~~~la~~~~--------~~~~~~v 93 (420)
T 1t3i_A 27 HPLVYLDNAATSQKPRAVLEKLMHYYEND----NA-NVHRGAHQLSVRATDAYEAVRNKVAKFIN--------ARSPREI 93 (420)
T ss_dssp EECEECBTTTCCCCCHHHHHHHHHHHHHT----CC-CC--CCSHHHHHHHHHHHHHHHHHHHHTT--------CSCGGGE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHhc----cC-CCCcccchHHHHHHHHHHHHHHHHHHHcC--------CCCCCeE
Confidence 35799999988765666777666542210 00 00001233543 3467889999999986 4 57899
Q ss_pred EEeCChHHHHHHHHHHh----cCCCCeEEEcCCCCCCh----hhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 113 VLTAGSTAANETLMFCL----ADPGDAFLLPTPYYPGF----DRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
++|+|+++++..++.++ +++||+|+++.|+|++. ...+... |++++.++.+ .++.+|++++++++++
T Consensus 94 ~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~l~~-- 168 (420)
T 1t3i_A 94 VYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-GAVLKFVQLD--EQESFDLEHFKTLLSE-- 168 (420)
T ss_dssp EEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-CCEEEEECBC--TTSSBCHHHHHHHCCT--
T ss_pred EEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhc-CcEEEEeccC--CCCCcCHHHHHHhhCC--
Confidence 99999999999999999 89999999999999983 4445555 9999999986 4567899999998754
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.. .. . .++..+ +.
T Consensus 169 ----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~---~~--~-~~~~~~-------------~~ 222 (420)
T 1t3i_A 169 ----KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAP---HY--P-LDVQLI-------------DC 222 (420)
T ss_dssp ----TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT---TS--C-CCHHHH-------------TC
T ss_pred ----CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccC---Cc--c-Cchhhc-------------CC
Confidence 7899999999999999998 778889999999999999999842 11 1 122222 45
Q ss_pred EEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc---------------------c-CCCChHHHHHHHH-HcCCch
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS---------------------F-GLVSSQTQYLLSR-MLSDKK 321 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~---------------------~-~~~s~~~q~~~~~-~l~~~~ 321 (464)
++++.|+||.+|.+| +||++++ +.+.+.+..... + ...+.+.+.++.. +++...
T Consensus 223 di~~~s~sK~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 299 (420)
T 1t3i_A 223 DWLVASGHKMCAPTG--IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT 299 (420)
T ss_dssp SEEEEEGGGTTSCTT--CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEehhhhcCCCc--eEEEEEc-hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence 688999999998778 8999995 445444433221 1 1244555555433 333211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC------ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeC
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSN------AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP 394 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~------~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~p 394 (464)
...+++.++.++++++++.+.|++. |+++..+. ++ ++++.++. . ...++... +.++||.++|
T Consensus 300 --~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~-~~~~~~~~-~------~~~~~~~~-l~~~gi~v~~ 368 (420)
T 1t3i_A 300 --DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAA-LASFNVAG-L------HASDVATM-VDQDGIAIRS 368 (420)
T ss_dssp --HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCS-EEEEEETT-B------CHHHHHHH-HHTTTEECBC
T ss_pred --HhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCC-EEEEEECC-C------CHHHHHHH-HHHCCeEEee
Confidence 1235667788888999999999987 88887664 55 55556753 1 12245544 5678999999
Q ss_pred CCCCCC------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 395 GSSCHC------NEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 395 g~~f~~------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
|..|.. ..++++||+++. .++++++.++++|+++++..+
T Consensus 369 ~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 369 GHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFS 414 (420)
T ss_dssp SCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 965531 126789999986 589999999999999988654
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=276.12 Aligned_cols=344 Identities=12% Similarity=0.068 Sum_probs=240.5
Q ss_pred CceEEeecccc-ccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 36 SGIIQMGLAEN-QLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 36 ~~~i~l~~~~n-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
.++|+++.|.+ .++ +|.+.+++.+..... +.........|+...+..++|+++|++++ . +++|+
T Consensus 46 ~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~-~~~i~ 111 (401)
T 2bwn_A 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAV-----GAGSGGTRNISGTTAYHRRLEAEIAGLHQ--------K-EAALV 111 (401)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHHH-----CSCCCSBTTTBCCBHHHHHHHHHHHHHTT--------C-SEEEE
T ss_pred CcEEEeeCCCcccCCCCHHHHHHHHHHHHHc-----CCCCCCcCcccCChHHHHHHHHHHHHHhC--------C-CcEEE
Confidence 45688988766 342 345666665542210 00000011235555577899999999985 2 57888
Q ss_pred EeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 114 LTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 114 it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
+|+|++ ++..++.+++ .+||.|+++.|+|+.+...++.. |++++.++.+ |++.+++.++... .++++
T Consensus 112 ~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~-------d~~~le~~l~~~~--~~~~~ 180 (401)
T 2bwn_A 112 FSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN-AGPKRIFRHN-------DVAHLRELIAADD--PAAPK 180 (401)
T ss_dssp ESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS-CCCEEEECTT-------CHHHHHHHHHHSC--TTSCE
T ss_pred ECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHc-CCeEEEEcCC-------CHHHHHHHHHhhc--cCCce
Confidence 988877 7777766653 58999999999999888887776 9999999863 6788888886421 13788
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+|++++|+||||.+++ +++|+++|+++|+++|+||+|....|+.. . ..+..... + ....+++++||
T Consensus 181 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~--g-~~~~~~~~-~-------~~~~~i~~~s~ 246 (401)
T 2bwn_A 181 LIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPR--G-AGVAERDG-L-------MHRIDIFNGTL 246 (401)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTT--S-CCHHHHHT-C-------GGGCSEEEEES
T ss_pred EEEEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCC--C-ceeeeccC-c-------cccCcEEEeec
Confidence 9999999999999998 67888999999999999999995545433 1 12221111 0 11346889999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhc-c--c-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMS-S--F-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV 347 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~--~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 347 (464)
||+||++| ||++++ +.+.+.+.... . + ..++++.+.++.++++... ...+++.++.++++++++.+.|++
T Consensus 247 sK~~~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~ 320 (401)
T 2bwn_A 247 AKAYGVFG---GYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKA 320 (401)
T ss_dssp SSTTCSCC---EEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCC---CEEecC-HHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999888 999985 44555444321 1 1 1234566766666664321 112466777888899999999988
Q ss_pred CCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeec-CCHHHHHHHHHHH
Q 037587 348 AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFAN-ITEETLQVALQRI 425 (464)
Q Consensus 348 ~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~-~~~e~l~~~l~~l 425 (464)
.|+++.++.++ ++|+.++.. ....++...|++++||.++|+..|+.. +.+++||+++. .+++++++++++|
T Consensus 321 ~g~~~~~~~~~-~~~~~~~~~------~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l 393 (401)
T 2bwn_A 321 LGMPIIDHGSH-IVPVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM 393 (401)
T ss_dssp HTCCBCCCSSS-CEEEECCCH------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCcccCCCCC-eEEEEeCCh------HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 88888877776 888988742 223357777766789999999877643 33689999985 6899999999999
Q ss_pred HHHHHh
Q 037587 426 KVFAQS 431 (464)
Q Consensus 426 ~~~l~~ 431 (464)
++++++
T Consensus 394 ~~~~~~ 399 (401)
T 2bwn_A 394 DLLWAR 399 (401)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 998754
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=275.81 Aligned_cols=341 Identities=13% Similarity=0.125 Sum_probs=240.6
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCC-CCCcEEE
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKF-DPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-~~~~i~i 114 (464)
.++|.|+.+.+...++.+.+++.+..... . ...........|.+..+..++|++++++++ . ++++|++
T Consensus 22 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~~~~v~~ 90 (406)
T 1kmj_A 22 LPLAYLDSAASAQKPSQVIDAEAEFYRHG--Y-AAVHRGIHTLSAQATEKMENVRKRASLFIN--------ARSAEELVF 90 (406)
T ss_dssp EECEECCTTTCCCCCHHHHHHHHHHHHHT--C-CCCSSCSSHHHHHHHHHHHHHHHHHHHHTT--------CSCGGGEEE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHhh--c-CCCCCCcchHHHHHHHHHHHHHHHHHHHcC--------CCCCCeEEE
Confidence 35789998887765566666666542210 0 000000000112234466889999999875 4 5789999
Q ss_pred eCChHHHHHHHHHHh----cCCCCeEEEcCCCCCChhh----hcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 115 TAGSTAANETLMFCL----ADPGDAFLLPTPYYPGFDR----DLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 115 t~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
|+|+++++..++.++ +++||+|+++.|+|++... .+... |++++.++.++ ++.+|++.+++.+.+
T Consensus 91 ~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~l~~---- 163 (406)
T 1kmj_A 91 VRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-GAELRVIPLNP--DGTLQLETLPTLFDE---- 163 (406)
T ss_dssp ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-TCEEEEECBCT--TSCBCGGGHHHHCCT----
T ss_pred eCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhC-CCEEEEEecCC--CCCcCHHHHHHHhcc----
Confidence 999999999999999 8999999999999976432 24445 99999999864 567899999998754
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|... .. . .++..+ +.++
T Consensus 164 --~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g---~~--~-~~~~~~-------------~~d~ 219 (406)
T 1kmj_A 164 --KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVM---HH--P-VDVQAL-------------DCDF 219 (406)
T ss_dssp --TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTT---TS--C-CCHHHH-------------TCSE
T ss_pred --CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcC---CC--C-Cccccc-------------CCCE
Confidence 7899999999999999998 788889999999999999999842 11 1 122222 4668
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc----------------------c-CCCChHHHHHHH-HHcCCchh
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS----------------------F-GLVSSQTQYLLS-RMLSDKKF 322 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~----------------------~-~~~s~~~q~~~~-~~l~~~~~ 322 (464)
++.|+||.+|++| +||++++ +.+.+.+..... + ...+.+.+.++. .+++...
T Consensus 220 ~~~s~~K~~g~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~- 295 (406)
T 1kmj_A 220 YVFSGHKLYGPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS- 295 (406)
T ss_dssp EEEEGGGTTSCTT--CEEEEEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-
T ss_pred EEEEchhccCCCC--cEEEEEe-HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH-
Confidence 8999999999888 8999995 445444332211 1 113445555443 3433211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC--CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC
Q 037587 323 TCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS--NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH 399 (464)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~ 399 (464)
..++++.++.++++++++.+.|+++ |+++.++ .++++. +.++. . +..++... +.++||.++||..|.
T Consensus 296 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~-~------~~~~~~~~-l~~~gi~v~~g~~~~ 365 (406)
T 1kmj_A 296 -ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIA-FNLGK-H------HAYDVGSF-LDNYGIAVRTGHHCA 365 (406)
T ss_dssp -HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEE-EEETT-C------CHHHHHHH-HHHTTEECEEECTTC
T ss_pred -HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEE-EEECC-C------CHHHHHHH-HhhCCcEEEeccccc
Confidence 1245667778888999999999988 8888877 777555 45652 1 12245544 467899999987653
Q ss_pred C------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 400 C------NEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 400 ~------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
. ..++++||+++. .++++++.++++|+++++..
T Consensus 366 ~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 366 MPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp HHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 1 225799999987 58999999999999988754
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=275.27 Aligned_cols=300 Identities=13% Similarity=0.130 Sum_probs=227.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh--hhcccCCCcEEEEEe
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPN-KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD--RDLKWRPGVEIVPIH 162 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~~g~~~~~v~ 162 (464)
..++|++++++++ .+++ +|++|+|+++++..++.+++++||+|+++.|+|+.+. ..++.. |++++.++
T Consensus 53 ~~~l~~~la~~~~--------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 123 (396)
T 2ch1_A 53 MDEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERY-GADVRTIE 123 (396)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHc-CCceEEec
Confidence 6789999999986 5677 8999999999999999999999999999999999874 345556 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
++. ++.+|++++++.+++. ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|. ++.. +
T Consensus 124 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~---~g~~--~ 188 (396)
T 2ch1_A 124 GPP--DRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS---LCGV--P 188 (396)
T ss_dssp CCT--TSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTTB--C
T ss_pred CCC--CCCCCHHHHHHHHHhC-----CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccc---ccCC--c
Confidence 864 5678999999998752 5789999999999999998 6778888999999999999998 4322 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-----------------------
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM----------------------- 299 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~----------------------- 299 (464)
.++. ..+..+++.|++|.++ ++.++|++++++ .+.+.+...
T Consensus 189 -~~~~-------------~~~~d~~~~s~~K~~~-~~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (396)
T 2ch1_A 189 -FYMD-------------KWEIDAVYTGAQKVLG-APPGITPISISP-KALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE 252 (396)
T ss_dssp -CCTT-------------TTTCCEEECCCC-CCC-CCSSCEEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSS
T ss_pred -cchh-------------hcCcCEEEEcCCcccc-CCCCeEEEEECH-HHHHhhhhccCcccceEechHHHHHhhhhhcc
Confidence 1211 1133466789999775 334569999854 444443221
Q ss_pred --cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCcc----EEEEEecCcccccCC
Q 037587 300 --SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAG----LFCWVDMRHLLVSNT 373 (464)
Q Consensus 300 --~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g----~f~~~~l~~~~~~~~ 373 (464)
...++.+...|.++..+++... .+++++.++.++++++++.+.|+++|+++.++.++ .++++.++....
T Consensus 253 ~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 327 (396)
T 2ch1_A 253 PKRYHHTVASNLIFALREALAQIA--EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVD--- 327 (396)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC---
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCC---
Confidence 0113456677877777776421 34467778888999999999999889888877653 478888863221
Q ss_pred hhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHHhhCcc
Q 037587 374 FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-AN-ITEETLQVALQRIKVFAQSCNPQ 435 (464)
Q Consensus 374 ~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~~~~ 435 (464)
..++...|++++||.+++|..+. .++++||++ +. .+++++++++++|++++++...+
T Consensus 328 ---~~~~~~~L~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 386 (396)
T 2ch1_A 328 ---WWKVSQYAMNNFSLEVQGGLGPT--FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPD 386 (396)
T ss_dssp ---HHHHHHHHHHHHCBCCBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTT
T ss_pred ---HHHHHHHHHHhCCEEEecCcccc--CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCcc
Confidence 23577777766799999987542 467999999 43 57899999999999999887644
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=280.20 Aligned_cols=334 Identities=16% Similarity=0.188 Sum_probs=234.4
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCC-CCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQD-YHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
+.|.|+.+....+++.+.+++.+........ + ......|++ ..+..++|++++++++ +++++|++|
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~--~---~~~~~~y~~~~~~~~~l~~~la~~~g--------~~~~~v~~~ 82 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQEN--G---PFSIAANQHIQQLIAQLRQALAETFN--------VDPNTITIT 82 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHHH--C---SSSHHHHHHHHHHHHHHHHHHHHHTT--------SCGGGEEEE
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHhcc--C---CcchhhHHHHHHHHHHHHHHHHHHcC--------CCHHHEEEe
Confidence 5688887764444556666665542210000 0 000114543 2467899999999975 577899999
Q ss_pred CChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 116 AGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 116 ~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|+++++..++.++ +++||+|+++.|+|+.+... ++.. |++++.++.+.++++.+|++.|++.+.+ ++
T Consensus 83 ~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~ 155 (390)
T 1elu_A 83 DNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARF-GITYRFFPVAATLNQGDAAAVLANHLGP------KT 155 (390)
T ss_dssp SSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHH-CCEEEEECCGGGSSSSCHHHHHHTTCCT------TE
T ss_pred CChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHh-CcEEEEEcCCCCCCccchHHHHHHhcCC------Cc
Confidence 99999999999999 89999999999999987543 3445 9999999986434678899999887753 78
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHh----hCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSK----SKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~----~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
++|++++|+||||.+++ +++|.++|+ ++|+++|+||+|. ++.. . .++ . ..+.++
T Consensus 156 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~---~g~~--~-~~~----~---------~~~~d~ 213 (390)
T 1elu_A 156 RLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQS---AGSL--P-LDF----S---------RLEVDY 213 (390)
T ss_dssp EEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTT---BTTB--C-CCT----T---------TSCCSE
T ss_pred eEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccc---cCCc--C-CCh----h---------hcCCCE
Confidence 99999999999999998 677888888 9999999999998 3222 1 111 1 124568
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHHHHH------------------------hcccCCCChHHHHHHHHHcCCchh
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSAATK------------------------MSSFGLVSSQTQYLLSRMLSDKKF 322 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~------------------------~~~~~~~s~~~q~~~~~~l~~~~~ 322 (464)
++.|+||.++ +|.++||++++++ +.+.+.. ....++.+...+.++..++.....
T Consensus 214 ~~~s~~K~~~-~~~g~G~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~ 291 (390)
T 1elu_A 214 YAFTGHKWFA-GPAGVGGLYIHGD-CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR 291 (390)
T ss_dssp EEEESSSTTC-CCTTCEEEEECTT-TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH
T ss_pred EEcccccccc-CCCceEEEEECHH-hHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHH
Confidence 8999999442 5667999999654 3332221 111234566666666555542110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee---cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 323 TCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL---KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~---~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
..++++.++.++++++++.+.|+++ |+++. ++.++++. ++++.... ..++...| .++||.+++|.
T Consensus 292 -~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~l-~~~gi~v~~~~-- 360 (390)
T 1elu_A 292 -QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVS-FTVDSPLG------HRAIVQKL-EEQRIYLRTIA-- 360 (390)
T ss_dssp -HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEE-EEECSSSC------HHHHHHHH-HHTTEECEEET--
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEE-EEcCCCCC------HHHHHHHH-HHCCEEEEecC--
Confidence 1136777888889999999999987 88877 34677544 58763211 23466666 47799999886
Q ss_pred CCCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 399 HCNEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 399 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
.++++||+++. .+++++++++++|+++
T Consensus 361 ---~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 ---DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp ---TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 35789999954 6899999999998753
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=264.32 Aligned_cols=337 Identities=14% Similarity=0.116 Sum_probs=240.3
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
+++|+|+.+.+..+++.+.+++.+. ...|....|..++++++++++.+.+| +++++|++|
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~----------------~~~~~~~~g~~~~~~~~~~~l~~~~g----~~~~~v~~~ 72 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARD----------------NMTQHAGYGQDSHCAKAARLIGELLE----RPDADVHFI 72 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHH----------------TTCCCCSTTCSHHHHHHHHHHHHHHT----CTTSEEEEE
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHH----------------HhhccccccccHHHHHHHHHHHHHhC----CCCccEEEe
Confidence 3579999988776667777776653 12466667788999999999988776 678899999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh--cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh-hcCCceEE
Q 037587 116 AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD--LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ-TLNLKVKG 192 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~~~~~ 192 (464)
+|+++++..++.+++++||.|+++.|+|+.+... +... |++++.++.+ ++.+|+++|++.+++.. ..+.++++
T Consensus 73 ~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~ 148 (359)
T 1svv_A 73 SGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEAT-GHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKL 148 (359)
T ss_dssp SCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHT-TCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEE
T ss_pred CCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcC-CCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceE
Confidence 9999999999999999999999999999988763 5555 9999999874 57899999999997610 11224899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++| ||||.++|.+++++|+++|+++|+++|+||+|.++.++..+.. .....+-. ...++..|++
T Consensus 149 v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~-----------~~d~~~~s~~ 215 (359)
T 1svv_A 149 VYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVND-LTLADIAR-----------LTDMFYIGAT 215 (359)
T ss_dssp EEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC-CCHHHHHH-----------HCSEEEEECT
T ss_pred EEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc-hhhhhhhh-----------cCCEEEEecc
Confidence 999999 7999999999999999999999999999999954323322101 11111100 1235678999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHh---ccc-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKM---SSF-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~---~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
|..+ ...+|+++++++ +.+.+... ... ...+......+..++.+.. +++.++.++++++++.+.|+..
T Consensus 216 K~g~--~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~ 287 (359)
T 1svv_A 216 KAGG--MFGEALIILNDA-LKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNL-----FFELGAHSNKMAAILKAGLEAC 287 (359)
T ss_dssp TTTC--SSCEEEEECSGG-GCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC--CCceEEEEEccc-HHHHHHHHHhcCCcccccchhhHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHhccC
Confidence 9754 355899998554 33323222 111 1122233333445565532 4566777888889999999555
Q ss_pred CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 349 GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 349 g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
|+++..+.+++|+|++++. +++..+++++||.+.+.. ...++++||+++. .+++++++++++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 353 (359)
T 1svv_A 288 GIRLAWPSASNQLFPILEN-----------TMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKR 353 (359)
T ss_dssp TCCBSSCCSSSEECBEEEH-----------HHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEccCCccceEEEEcCH-----------HHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHHHH
Confidence 8888877778899988752 466777654499993211 1235689999875 689999999999998
Q ss_pred HHHh
Q 037587 428 FAQS 431 (464)
Q Consensus 428 ~l~~ 431 (464)
++++
T Consensus 354 ~~~~ 357 (359)
T 1svv_A 354 LVAS 357 (359)
T ss_dssp C---
T ss_pred HHhc
Confidence 8754
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=274.41 Aligned_cols=337 Identities=14% Similarity=0.098 Sum_probs=233.4
Q ss_pred CceEEeecccccc-cHHHHHHHHHhhhhhHHhhhcccccc--cccccCCCCCCcHHHHHH-HHHHHHHHcCCCCCCCCCc
Q 037587 36 SGIIQMGLAENQL-SFDLLESWLASNQEAVELKRNGESLF--RELALFQDYHGFPDAKKE-LVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 36 ~~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~-ia~~~~~~~~~~~~~~~~~ 111 (464)
+++|.|+.+.+.. +++.+.+++.+...... . ... .....|.+..+..+++++ ++++++ .+ +
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~l~~~~la~~~~--------~~--~ 71 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYS----V-CDFCTTGRLDEIKTPPIHDFIHNQLPKFLG--------CD--V 71 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC-------------------------CCHHHHHHTHHHHHTT--------SS--E
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcc----c-CCccccccchhhHHHHHHHHHHHHHHHHcC--------CC--E
Confidence 3567887754433 34566666665421100 0 000 011234455678999999 999985 33 9
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEe--cCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH--CSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
|++|+|+++++..++.+++++||+|++++|+|+++...+... |++++.++ .+ .++.+|+++|++.+++... .++
T Consensus 72 v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~-~~~ 147 (371)
T 2e7j_A 72 ARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA-GLNIALVPKTDY--PDYAITPENFAQTIEETKK-RGE 147 (371)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHT-TCEEEEECCCCT--TTCCCCHHHHHHHHHHHTT-TSC
T ss_pred EEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHc-CCeEEEeecccC--CCCCcCHHHHHHHHHhhcc-cCC
Confidence 999999999999999999999999999999999888887776 99999999 65 3578999999999875321 137
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++|++++|+||||.+++ +++|.++|+++|+++|+||+|+...+. .++..+ +..+++.
T Consensus 148 ~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~------~~~~~~-------------~~di~~~ 205 (371)
T 2e7j_A 148 VVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP------VSLKEI-------------GADFIVG 205 (371)
T ss_dssp EEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC------CCHHHH-------------TCSEEEE
T ss_pred eEEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC------CChhhc-------------CCCEEEe
Confidence 899999999999999998 477888899999999999999863221 122222 2348899
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHH-HHHhcc---------cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHH--HHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSA-ATKMSS---------FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRL--RKR 337 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~-~~~~~~---------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~--~~~ 337 (464)
|+||+++ +|.|+||++++++ +.+. +..... .++.+...+.++..+++.. .. +.++.+ +++
T Consensus 206 s~sK~~~-~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~---~~~~~~~~~~~ 277 (371)
T 2e7j_A 206 SGHKSMA-ASGPIGVMGMKEE-WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV---RE---RIKRWDEEVEK 277 (371)
T ss_dssp EHHHHSS-CCSSCEEEEECTT-TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH---HH---HGGGHHHHHHH
T ss_pred cCCcCCC-CCCCcEEEEEech-hhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHH---HH---HHHHHHHHHHH
Confidence 9999998 4559999999665 3332 322222 2334444454444444321 11 445556 677
Q ss_pred HHHHHHHHHhCCCeeecCC--ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC----CCCCeEE-EEe
Q 037587 338 KEMLVSGLKVAGIRCLKSN--AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC----NEPGWFR-ICF 410 (464)
Q Consensus 338 ~~~l~~~l~~~g~~~~~~~--~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~----~~~~~~R-is~ 410 (464)
++++.+.|++.|+++..+. .+.++|++++ +..++...+. ++||.+.| ..|.. ..++++| |++
T Consensus 278 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~ 346 (371)
T 2e7j_A 278 ARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE---------VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKL 346 (371)
T ss_dssp HHHHHHHHHHTTCEEESSSSCCSSEEEEECH---------HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEE
T ss_pred HHHHHHHHHHcCcEEecCCCccCceEEEECC---------CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEe
Confidence 7888888988888887653 2448999886 1224666665 78999988 43321 1257899 999
Q ss_pred ec--CCHHHHHHHHHHHHHHHHhh
Q 037587 411 AN--ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 411 ~~--~~~e~l~~~l~~l~~~l~~~ 432 (464)
+. .+++++++++++|+++++++
T Consensus 347 ~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 347 STYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred eccCCCHHHHHHHHHHHHHHHHhc
Confidence 85 58999999999999998764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=268.73 Aligned_cols=345 Identities=16% Similarity=0.147 Sum_probs=241.6
Q ss_pred CCCceEEeecccc-cc-cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCC----cHHHHHHHHHHHHHHcCCCCCC
Q 037587 34 NPSGIIQMGLAEN-QL-SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHG----FPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 34 ~~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
++.++|||+.|.+ .+ +++.+.+++.+.... . + .....|....| ..+|++.|+++++ +
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~--~---~----~~~~~~~~~~G~~~~~~~l~~~la~~~g--------~ 124 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEK--F---G----SGTCGSRMLNGTFHDHMEVEQALRDFYG--------T 124 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHH--H---C----SCCCSCTTTTCCCHHHHHHHHHHHHHHT--------C
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHH--h---C----CCCcccccccCCcHHHHHHHHHHHHHhC--------C
Confidence 4567899999864 21 345666666554221 0 0 01112322333 3677777777774 3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
+ +.++++++++++..++.+++++||.|+++.|+|..+...+... |++++.++. .|++.|++.+++.. .
T Consensus 125 ~--~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~-g~~~~~~~~-------~d~~~le~~l~~~~--~ 192 (427)
T 2w8t_A 125 T--GAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG-NAEIVRFRH-------NSVEDLDKRLGRLP--K 192 (427)
T ss_dssp S--EEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHS-CSEEEEECT-------TCHHHHHHHHHTSC--S
T ss_pred C--ceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCeeEEeCC-------CCHHHHHHHHHhcc--C
Confidence 2 4555566667899999999999999999999999998888877 999988873 48899999886420 1
Q ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
.++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.++.. ..++..... + ..+.+++
T Consensus 193 ~~~~~v~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~---g~~~~~~~~-~-------~~~~di~ 258 (427)
T 2w8t_A 193 EPAKLVVLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN---GRGVYEAQG-L-------EGQIDFV 258 (427)
T ss_dssp SSCEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT---SCCHHHHTT-C-------TTCCSEE
T ss_pred CCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCchHhhcC-C-------CcCCcEE
Confidence 26889999999999999987 77888999999999999999998766532 122222211 0 2245889
Q ss_pred EcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-ccc---CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
+.||||++|++| ||++++++ +.+.+... ..+ .+.++..+.++.++++... .+++.++.++++++++.+
T Consensus 259 ~~s~sK~~g~~g---G~v~~~~~-l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~----~~~~~~~~~~~~~~~l~~ 330 (427)
T 2w8t_A 259 VGTFSKSVGTVG---GFVVSNHP-KFEAVRLACRPYIFTASLPPSVVATATTSIRKLM----TAHEKRERLWSNARALHG 330 (427)
T ss_dssp EEESSSTTCSCC---EEEEECCT-TGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHH
T ss_pred EecchhhhccCC---CEEEeCHH-HHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHH
Confidence 999999999877 99999654 33333222 111 2355555555556655322 145667788888999999
Q ss_pred HHHhCCCeee-cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEeec-CCHHHHHH
Q 037587 344 GLKVAGIRCL-KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN-EPGWFRICFAN-ITEETLQV 420 (464)
Q Consensus 344 ~l~~~g~~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Ris~~~-~~~e~l~~ 420 (464)
.|++.|+++. ++..|.++|+.++.. ....+++..|+ ++||.+.|+..|+.. +.+++||+++. .+++++++
T Consensus 331 ~L~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~ 403 (427)
T 2w8t_A 331 GLKAMGFRLGTETCDSAIVAVMLEDQ------EQAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQT 403 (427)
T ss_dssp HHHHHTCEESCSSCCSSEEEEEESSH------HHHHHHHHHHH-HTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHH
T ss_pred HHHHcCCcccCCCCCCCEEEEEECCH------HHHHHHHHHHH-HCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHH
Confidence 9988898887 551345889988642 22345777776 459999999877632 34689999986 68999999
Q ss_pred HHHHHHHHHHhhCccc
Q 037587 421 ALQRIKVFAQSCNPQM 436 (464)
Q Consensus 421 ~l~~l~~~l~~~~~~~ 436 (464)
++++|++++++.....
T Consensus 404 ~~~~l~~~l~~~~~~~ 419 (427)
T 2w8t_A 404 VLGMFQAAGRAVGVIG 419 (427)
T ss_dssp HHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999998876543
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=267.12 Aligned_cols=299 Identities=16% Similarity=0.142 Sum_probs=223.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh--hhcccCCCcEEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPN-KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD--RDLKWRPGVEIVPI 161 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~~g~~~~~v 161 (464)
+..+++++++++++ ++++ +|++|+|+++++..++.+++++||+|+++.|+|+.+. ..+... |++++.+
T Consensus 53 ~~~~l~~~la~~~g--------~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v 123 (393)
T 2huf_A 53 IMDDIKEGVRYLFQ--------TNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRY-GADVRVV 123 (393)
T ss_dssp HHHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHc-CCeeEEE
Confidence 45788888888875 5565 8999999999999999999999999999999997642 233445 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
++++ ++.+|++.+++.+++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||++. ++..
T Consensus 124 ~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~---~~~~-- 188 (393)
T 2huf_A 124 KSKV--GQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS---LGGA-- 188 (393)
T ss_dssp ECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTTB--
T ss_pred eCCC--CCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc---cCCC--
Confidence 9864 4578999999998752 6789999999999999998 6788889999999999999986 3322
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcC-CCCCccEEEEEEecCHHHHHHHHHh----ccc--------------
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD-FSMPGFRVGMIYSNNERVVSAATKM----SSF-------------- 302 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~-~g~~GlRiG~l~~~~~~~~~~~~~~----~~~-------------- 302 (464)
. .++ . ..+.++++.|+||+ +|++|+ ||++++ +.+.+.+... .++
T Consensus 189 ~-~~~----~---------~~~~d~~~~s~sK~l~g~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (393)
T 2huf_A 189 P-MFM----D---------RWEIDAMYTGSQKVLGAPPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCF 251 (393)
T ss_dssp C-CCT----T---------TTTCSEEECCSSSTTCCCSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCS
T ss_pred C-cch----h---------hcCccEEEECCCcccccCCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccc
Confidence 1 111 1 12466889999997 567787 999995 5555555432 111
Q ss_pred -------CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ccEEEEEecCcccccC
Q 037587 303 -------GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN---AGLFCWVDMRHLLVSN 372 (464)
Q Consensus 303 -------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~f~~~~l~~~~~~~ 372 (464)
++.+...+.++.++++... ...+++.++.++++++++.+.|.+.|+++..+. ++++++++++....
T Consensus 252 ~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-- 327 (393)
T 2huf_A 252 GRPRIYHHTISSTLLYGLREAIAMAC--EEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVD-- 327 (393)
T ss_dssp SSCCCCSCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCC--
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCC--
Confidence 2345555665555654321 123666778888899999999998888877653 45588888863211
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-AN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
..++...|++++||.+++|..|. ..+++||++ +. .+++++++++++|++++++.+.
T Consensus 328 ----~~~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 328 ----WLKAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp ----HHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 23577777766799999988653 367999999 53 4688999999999999987764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=266.71 Aligned_cols=299 Identities=15% Similarity=0.075 Sum_probs=220.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh--hhcccCCCcEEEEEe
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD--RDLKWRPGVEIVPIH 162 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~~g~~~~~v~ 162 (464)
+..++|++++++++ +++++|++|+|+++++..++.+++++||+|+++.|+|+++. ..+... |++++.++
T Consensus 43 ~~~~l~~~la~~~g--------~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 113 (392)
T 2z9v_A 43 LYEKVVDKAQKAMR--------LSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRY-SPHLLEIE 113 (392)
T ss_dssp HHHHHHHHHHHHTT--------CSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHH-CSCEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHHc-CCceEEee
Confidence 45778888888875 56789999999999999999999999999999999997652 233335 89999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
+++ ++.+|++.+++.+++ ++++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ ++.. .
T Consensus 114 ~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~---~g~~--~ 179 (392)
T 2z9v_A 114 VPY--NEAIDPQAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSS---FGGM--K 179 (392)
T ss_dssp CCT--TSCCCHHHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTT---BTTB--S
T ss_pred CCC--CCCCCHHHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEcccc---cCCc--c
Confidence 874 346899999999864 236889999999999999987 6688889999999999999997 3222 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHHHHh----------------------
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAATKM---------------------- 299 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~~~---------------------- 299 (464)
.++..+ +..+++.|+||++ |.+|+ ||+++++ .+.+.++..
T Consensus 180 -~~~~~~-------------~~d~~~~s~sK~~~~~~g~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 242 (392)
T 2z9v_A 180 -THPEDC-------------KADIYVTGPNKCLGAPPGL--TMMGVSE-RAWAKMKANPLAPRASMLSIVDWENAWSRDK 242 (392)
T ss_dssp -CCGGGG-------------TCSEEEECSSSTTCCCSCC--EEEEECH-HHHHHHHTCTTSCCSSTTCSGGGTTTTSTTS
T ss_pred -cccccc-------------cceEEEecCcccccCCCce--eEEEECH-HHHHHhhhccCCCCceeccHHHHHhhhcccC
Confidence 121111 3457889999965 44564 9999954 444444321
Q ss_pred cccCCCChHHHHHHHHHcCCchhhHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeec-CC---ccEEEEEecCcccccCCh
Q 037587 300 SSFGLVSSQTQYLLSRMLSDKKFTCNY-MKENRKRLRKRKEMLVSGLKVAGIRCLK-SN---AGLFCWVDMRHLLVSNTF 374 (464)
Q Consensus 300 ~~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~---~g~f~~~~l~~~~~~~~~ 374 (464)
...++.+...+.++..+++.. .+. +++.++.++++++++.+.|+++|+++.. +. .+.++|+.++....
T Consensus 243 ~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---- 315 (392)
T 2z9v_A 243 PFPFTPSVSEINGLDVALDLY---LNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVD---- 315 (392)
T ss_dssp CCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCC----
T ss_pred CCCCCCCHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCC----
Confidence 112234555555555555421 333 5667788888999999999888887765 32 45688888863211
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-e-cCCHHHHHHHHHHHHHHHHhhCc
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-A-NITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~-~~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
..++...|.+++||.+++|..+. .++++||++ + ..+++++++++++|++++++.+.
T Consensus 316 --~~~l~~~L~~~~gi~v~~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~~ 373 (392)
T 2z9v_A 316 --EKALRQAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAGR 373 (392)
T ss_dssp --HHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHhcCCEEEecCCCCC--CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcCC
Confidence 23577777654599999987543 467999995 5 46899999999999999988774
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=264.21 Aligned_cols=295 Identities=15% Similarity=0.182 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCCCChhhhccc--CCCcEEEEE
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA----DPGDAFLLPTPYYPGFDRDLKW--RPGVEIVPI 161 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~--~~g~~~~~v 161 (464)
+++++++++++ +++++|++|+|+++++..++.+++ ++||.|+++.|+|+.+...+.. ..|++++.+
T Consensus 47 ~~~~~la~~~~--------~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v 118 (382)
T 4hvk_A 47 EAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYI 118 (382)
T ss_dssp HHHHHHHHHTT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcC--------CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEe
Confidence 56666666554 678899999999999999999988 9999999999999987665432 139999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
++++ ++.+|+++|++.+.+ ++++|++++|+||||.+++ +++|.++|+++|+ +|+|++|+. +..
T Consensus 119 ~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~---~~~-- 181 (382)
T 4hvk_A 119 PVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASV---GQI-- 181 (382)
T ss_dssp CBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTB---TTB--
T ss_pred ccCC--CCCcCHHHHHHHhcc------CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhc---CCC--
Confidence 9873 567899999998754 7899999999999999988 5678889999999 999999873 221
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHH-HHHHH-----HHhcccCCCChHHHHHHHH
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNER-VVSAA-----TKMSSFGLVSSQTQYLLSR 315 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~-~~~~~-----~~~~~~~~~s~~~q~~~~~ 315 (464)
. .+.... +..+++.|+||.+|.+| +|+++++++. +.... ......++.+...+.++..
T Consensus 182 ~-~~~~~~-------------~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (382)
T 4hvk_A 182 E-VDVEKI-------------GADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGK 245 (382)
T ss_dssp C-CCHHHH-------------TCSEEEEESGGGTSCTT--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHH
T ss_pred C-CCchhc-------------CCCEEEEeHHHhcCCCc--eEEEEEcCccCcCcccccCCCcCccccCCcCHHHHHHHHH
Confidence 1 122111 45688999999988667 5666664432 00000 0001123345566666656
Q ss_pred HcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc---cEEEEEecCcccccCChhHHHHHHHHHHHhcCeE
Q 037587 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNA---GLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLN 391 (464)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~ 391 (464)
++. +..+++++.++.++++++++.+.|+++ |+.+..+.+ +.++++.++.. ...++...| .++||.
T Consensus 246 al~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l-~~~gi~ 314 (382)
T 4hvk_A 246 AAE---ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGESIVLSL-DMAGIQ 314 (382)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-------CHHHHHHHH-HHTTCB
T ss_pred HHH---HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-------CHHHHHHHH-HHCCEE
Confidence 554 224567888888999999999999987 787776543 23666666521 122455555 567999
Q ss_pred EeCCCCCCCCC-----------------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 392 ISPGSSCHCNE-----------------PGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 392 v~pg~~f~~~~-----------------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
+++|..|.... ++++||+++. .+++++++++++|++++++.+.
T Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 315 ASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99998776532 5799999986 6899999999999999987654
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=265.12 Aligned_cols=294 Identities=14% Similarity=0.087 Sum_probs=218.1
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh--hhcccCCCcEEEEEe
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD--RDLKWRPGVEIVPIH 162 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~~g~~~~~v~ 162 (464)
+..++|++++++++ ++++++++|+|+++++..++.+++++||+|+++.|+|+++. ..+... |++++.++
T Consensus 35 ~~~~l~~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 105 (352)
T 1iug_A 35 VFLKARGLLREAFR--------TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEA-GLVVERLD 105 (352)
T ss_dssp HHHHHHHHHHHHHT--------CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHHHHHHHHHc-CCceEEEe
Confidence 45788999999886 56789999999999999999999999999999999998764 333445 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC--CeEEEEeccccccccCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK--RIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~--~~~lI~Deay~~~~~~~~~ 240 (464)
+++ ++.+|++++++ +++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|. ++..
T Consensus 106 ~~~--~~~~d~~~l~~---------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~---~~~~- 167 (352)
T 1iug_A 106 YPY--GDTPRPEDVAK---------EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTS---LLVG- 167 (352)
T ss_dssp CCT--TCCCCTTTSCC---------SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTT---BTTB-
T ss_pred CCC--CCCCCHHHHhc---------cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCcc---ccCc-
Confidence 864 45678887765 27889999999999999988 66788899999 99999999997 3322
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHH------------HHHH---hcccCC
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVS------------AATK---MSSFGL 304 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~------------~~~~---~~~~~~ 304 (464)
. .++..+ +..+++.|+||.+ |.+| +||++++++.+.. .... ....++
T Consensus 168 -~-~~~~~~-------------~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T 1iug_A 168 -E-VALEAM-------------GVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWT 230 (352)
T ss_dssp -C-CCSGGG-------------TCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSC
T ss_pred -c-eecccc-------------CeeEEEecCcccccCCCc--eeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCC
Confidence 1 111111 3457789999954 4344 7999986553321 1111 122345
Q ss_pred CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-ccEEEEEecCcccccCChhHHHHHHHH
Q 037587 305 VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN-AGLFCWVDMRHLLVSNTFEAEKELWKK 383 (464)
Q Consensus 305 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~f~~~~l~~~~~~~~~~~~~~l~~~ 383 (464)
.+...+.++..+++.. .+++++.++.++++++++.+.|++.|+++..+. .+.++|++++.... ..+++..
T Consensus 231 ~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 301 (352)
T 1iug_A 231 PAINLVLAVAAVLEEV---LPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP------YARVKEA 301 (352)
T ss_dssp CCHHHHHHHHHHHHHH---GGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCCC------HHHHHHH
Confidence 6667777666666532 222667788888999999999998888887764 56689999874211 2346666
Q ss_pred HHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 384 IIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
+. ++||.+++|..+ ..++++||+++. .+++++++++++|++++++.-+
T Consensus 302 l~-~~gi~v~~~~~~--~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 350 (352)
T 1iug_A 302 FA-QRGAVIAGGQGP--LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEILP 350 (352)
T ss_dssp HH-TTTEECEECCGG--GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC-
T ss_pred HH-HCCEEEEeCCCc--cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 65 669999998732 246799999986 4799999999999999887643
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.4e-32 Score=266.83 Aligned_cols=299 Identities=15% Similarity=0.170 Sum_probs=220.7
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCCCChhhhccc--CCCcEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA----DPGDAFLLPTPYYPGFDRDLKW--RPGVEI 158 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~--~~g~~~ 158 (464)
...+++++++++++ +++++|++|+|+++++.+++.++. ++||.|++++|+|+.+...+.. ..|+++
T Consensus 44 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4eb5_A 44 AVQEAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEE
Confidence 35678888888875 567899999999999999999998 8999999999999877655432 139999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
+.+++++ ++.+|++++++.+++ ++++|++++|+||||.+++ +++|+++|+++|++ |+||+|+ ++.
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~---~g~ 180 (382)
T 4eb5_A 116 EYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATAS---VGQ 180 (382)
T ss_dssp EEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTT---BTT
T ss_pred EEeccCC--CCccCHHHHHHHhcC------CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchh---cCC
Confidence 9999874 467899999988754 7899999999999999988 56789999999999 9999998 432
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHH-HHHHHH-----HhcccCCCChHHHHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNER-VVSAAT-----KMSSFGLVSSQTQYL 312 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~-~~~~~~-----~~~~~~~~s~~~q~~ 312 (464)
. . .++..+ +.++++.|+||.+|++| +||++++++. +..... .....++.+...+.+
T Consensus 181 ~--~-~~~~~~-------------~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (382)
T 4eb5_A 181 I--E-VDVEKI-------------GADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVG 242 (382)
T ss_dssp B--C-CCHHHH-------------TCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHH
T ss_pred c--c-cCcccc-------------CCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHH
Confidence 2 1 122222 35678999999988667 6999886542 211110 011223445555665
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc---cEEEEEecCcccccCChhHHHHHHHHHHHhc
Q 037587 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNA---GLFCWVDMRHLLVSNTFEAEKELWKKIIFEV 388 (464)
Q Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~ 388 (464)
+..+++. +.+.+++.++.++++++++.+.|+++ |+++..+.+ +.++++.++. .. ..++...|. ++
T Consensus 243 ~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~l~-~~ 311 (382)
T 4eb5_A 243 FGKAAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY-IE------GESIVLSLD-MA 311 (382)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT-SC------HHHHHHHHH-HH
T ss_pred HHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC-cC------HHHHHHHHH-HC
Confidence 5555542 13356778888899999999999987 787776541 3367777762 11 224666664 67
Q ss_pred CeEEeCCCCCCCC-----------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCcc
Q 037587 389 GLNISPGSSCHCN-----------------EPGWFRICFAN-ITEETLQVALQRIKVFAQSCNPQ 435 (464)
Q Consensus 389 gI~v~pg~~f~~~-----------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~ 435 (464)
||.+++|..|... ..+++||+++. .+++++++++++|++++++.+..
T Consensus 312 gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4eb5_A 312 GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp TCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999865431 25799999985 58999999999999999876653
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.98 E-value=9.6e-31 Score=262.55 Aligned_cols=340 Identities=17% Similarity=0.164 Sum_probs=233.7
Q ss_pred CCCCceEEeecccccc---cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 33 HNPSGIIQMGLAENQL---SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 33 ~~~~~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
.....+|||+.+ +.+ +++.+.+++.+.... -+.........|+......+++++++++++ .+
T Consensus 56 ~~g~~~ld~~s~-~~l~~~~~p~v~~a~~~~l~~-----~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~- 120 (409)
T 3kki_A 56 QASPDDIILQSN-DYLALANHPLIKARLAKSLLE-----EQQSLFMSASFLQNDYDKPMIEKRLAKFTG--------FD- 120 (409)
T ss_dssp CCCTTSEECCCS-CTTCCTTCHHHHHHHHHHHHS-----CCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--------CS-
T ss_pred CCCCceEEeecc-CccCCcCCHHHHHHHHHHHHH-----cCCCCCccccccCCcHHHHHHHHHHHHHhC--------CC-
Confidence 345678999887 332 235555555543211 000000011122333345788888888875 22
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
..+ +++++++++..++.+++++||.|+++.|+|+.+...+... |++++.++. .|+++|++.+.+. +
T Consensus 121 ~~i-~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~le~~l~~~-----~ 186 (409)
T 3kki_A 121 ECL-LSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYA-NAQAHPFMH-------NNCDHLRMLIQRH-----G 186 (409)
T ss_dssp EEE-EESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHT-TCEEEEECT-------TCHHHHHHHHHHH-----C
T ss_pred eEE-EecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHc-CCeEEEecC-------CCHHHHHHHHHhc-----C
Confidence 334 4555579999999999999999999999999888888776 999988764 4789999998762 4
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++|++++|+||||.+++ +++|+++|+++|+++|+||+|....++.. . ........ . ..+.++++.
T Consensus 187 ~~~vi~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~--g-~~~~~~~~-~-------~~~~di~~~ 252 (409)
T 3kki_A 187 PGIIVVDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN--G-AGLLAELG-L-------TREVHFMTA 252 (409)
T ss_dssp SCEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--G-CCHHHHHT-C-------GGGCSEEEE
T ss_pred CeEEEECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--C-CcchhhcC-C-------CCCCCEEEe
Confidence 689999999999999998 78899999999999999999987555432 1 11111111 0 113458899
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHHHh-cc--cC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAATKM-SS--FG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~~--~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 345 (464)
||||++|++| ||++++++.+ +.+... .. +. ..+++.+.++.+.++..+ ..++.++.++++++++.+.|
T Consensus 253 s~sK~~~~~g---g~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~----~~~~~~~~~~~~~~~l~~~L 324 (409)
T 3kki_A 253 SLAKTFAYRA---GAIWCNNEVN-RCVPFISYPAIFSSTLLPYEAAGLETTLEIIE----SADNRRQHLDRMARKLRIGL 324 (409)
T ss_dssp ESSSTTCSSC---EEEEESSSGG-GTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhCCCc---eEEEECHHHH-HHHHHhCcCccccCCCcHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHH
Confidence 9999998664 9999966543 333221 11 12 245555556655554322 12567788889999999999
Q ss_pred HhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHH
Q 037587 346 KVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-CNEPGWFRICFAN-ITEETLQVALQ 423 (464)
Q Consensus 346 ~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~ 423 (464)
++.|+++. + .++++|+.++.. ....+++..|+ ++||.+.|+..+. ..+.+++||+++. .++++++++++
T Consensus 325 ~~~g~~~~-~-~~~~~~~~~~~~------~~~~~~~~~L~-~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~ 395 (409)
T 3kki_A 325 SQLGLTIR-S-ESQIIGLETGDE------RNTEKVRDYLE-SNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIE 395 (409)
T ss_dssp HTTTCCCC-C-SSSEEEEEEESH------HHHHHHHHHHH-HTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred HHcCCccC-C-CCCEEEEEeCCH------HHHHHHHHHHH-HCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHH
Confidence 99988776 3 556888888642 12335777776 4599998865432 2345799999985 68999999999
Q ss_pred HHHHHHHhh
Q 037587 424 RIKVFAQSC 432 (464)
Q Consensus 424 ~l~~~l~~~ 432 (464)
+|+++++..
T Consensus 396 ~l~~~l~~~ 404 (409)
T 3kki_A 396 VCSDAVNYG 404 (409)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 999998764
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-31 Score=263.85 Aligned_cols=286 Identities=16% Similarity=0.158 Sum_probs=208.5
Q ss_pred cccCCCCCCcH---HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----h
Q 037587 77 LALFQDYHGFP---DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----D 149 (464)
Q Consensus 77 ~~~Y~~~~g~~---~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~ 149 (464)
...|+. .|.+ +|+++++++++ . +++++++|+++++..++.+++++||.|+++.|+|+.+.. .
T Consensus 53 ~~~Y~~-~~~~~~~~l~~~ia~~~g--------~--~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~ 121 (404)
T 1e5e_A 53 GYIYTR-LGNPTVSNLEGKIAFLEK--------T--EACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHA 121 (404)
T ss_dssp SCCBTT-TCCHHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTH
T ss_pred CccccC-CcChHHHHHHHHHHHHhC--------C--CcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHH
Confidence 345776 4556 89999999985 2 367888888999999999999999999999999998877 5
Q ss_pred cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh-CCeEEEEe
Q 037587 150 LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS-KRIHIVSD 228 (464)
Q Consensus 150 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~-~~~~lI~D 228 (464)
++.. |++++.++++ |++++++.+++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+|
T Consensus 122 ~~~~-g~~~~~v~~~-------d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~D 184 (404)
T 1e5e_A 122 LTKF-GIQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIAD 184 (404)
T ss_dssp HHHT-TCEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEE
T ss_pred HHHc-CCEEEEECCC-------CHHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEE
Confidence 6666 9999999864 67888887754 7899999999999999986 7889999999 99999999
Q ss_pred ccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHhcccC---C
Q 037587 229 EIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKMSSFG---L 304 (464)
Q Consensus 229 eay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~~~~~---~ 304 (464)
|+|..+.+. . ++ .+ ++++++.|+||.|+++|+|+ ||++++++.+.+.+......+ .
T Consensus 185 e~~~~~~~~-~-----~~-~~-------------~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~ 244 (404)
T 1e5e_A 185 NTFCSPMIT-N-----PV-DF-------------GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSV 244 (404)
T ss_dssp CTTTCTTTC-C-----GG-GG-------------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCC
T ss_pred CCCchhhhC-C-----cc-cc-------------CCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCC
Confidence 999975442 1 11 12 56789999999999999998 999996654443555544432 4
Q ss_pred CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCeeecC----CccEEEEEec
Q 037587 305 VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA---------------GIRCLKS----NAGLFCWVDM 365 (464)
Q Consensus 305 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------------g~~~~~~----~~g~f~~~~l 365 (464)
++++.|.++...++... ...+...+....+.+.+++. |+++.++ .++++.| ++
T Consensus 245 ~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~ 316 (404)
T 1e5e_A 245 ISPHDAWLITRGLSTLN-------IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-IL 316 (404)
T ss_dssp CCHHHHHHHHHHHTTHH-------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EE
T ss_pred CCHHHHHHHHHhHhHHH-------HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-Ee
Confidence 67788888888887632 12222233444444455443 2222222 2776666 77
Q ss_pred CcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC-----------------------CC--CCeEEEEeecCCHHHHHH
Q 037587 366 RHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC-----------------------NE--PGWFRICFANITEETLQV 420 (464)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~-----------------------~~--~~~~Ris~~~~~~e~l~~ 420 (464)
+.. .+.+..++++.|| +.+|..|+. .+ ++++|||++. |+++.
T Consensus 317 ~~~---------~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---e~~~~ 383 (404)
T 1e5e_A 317 KSG---------FEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADE 383 (404)
T ss_dssp TTH---------HHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHH
T ss_pred CCC---------HHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHH
Confidence 631 1234567788899 556665552 12 5799999995 77888
Q ss_pred HHHHHHHHHHh
Q 037587 421 ALQRIKVFAQS 431 (464)
Q Consensus 421 ~l~~l~~~l~~ 431 (464)
++++|+++++.
T Consensus 384 li~~l~~al~~ 394 (404)
T 1e5e_A 384 LIADFKQGLDA 394 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-31 Score=261.73 Aligned_cols=296 Identities=16% Similarity=0.193 Sum_probs=220.3
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDP--NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~--~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v 161 (464)
..+++++++++++ +++ ++|++|+|+++++. ++.+++++||.|++++|+|.+ +...+... |++++.+
T Consensus 37 ~~~~~~~la~~~~--------~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v 106 (384)
T 3zrp_A 37 LAYSLKGLRYVMG--------ASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRY-PVNVKVL 106 (384)
T ss_dssp HHHHHHHHHHHHT--------CCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTS-SCEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHc-CCcEEEe
Confidence 4566777777765 455 88999999999999 999999999999999999954 44445555 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+++. ++.+|++++++.+.+ .++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+. ...
T Consensus 107 ~~~~--~~~~d~~~l~~~i~~-----~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---~~~-- 171 (384)
T 3zrp_A 107 RPSP--GDYVKPGEVEEEVRK-----SEYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSV---GAE-- 171 (384)
T ss_dssp CCST--TCCCCHHHHHHHHHH-----SCEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTT---TTS--
T ss_pred cCCC--CCCCCHHHHHHHHHh-----CCCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccc---cCc--
Confidence 9875 457899999999875 26899999999999999988 67789999999999999999873 221
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHH------------HHHh----------
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA------------ATKM---------- 299 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~------------~~~~---------- 299 (464)
. .++. ..+.++++.|+||.++ ++.++||++++++.+... ....
T Consensus 172 ~-~~~~-------------~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (384)
T 3zrp_A 172 E-VKAE-------------EWNVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEG 236 (384)
T ss_dssp C-CCTT-------------TTTCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTT
T ss_pred c-cccc-------------ccCCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhccc
Confidence 1 1111 1245688999999885 334599999965543332 0111
Q ss_pred -ccc-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ccEEEEEecCcccccCC
Q 037587 300 -SSF-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN----AGLFCWVDMRHLLVSNT 373 (464)
Q Consensus 300 -~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~f~~~~l~~~~~~~~ 373 (464)
... ++.+...+.++..++.... ...+++.++.++++++++.+.|+++|+++..+. +++++|+.++. ..
T Consensus 237 ~~~~~g~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~--- 310 (384)
T 3zrp_A 237 KAAYFATPPVHVILQLAEAFRLIE--KEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-AD--- 310 (384)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-SC---
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-CC---
Confidence 111 2455556665555554211 222677788888999999999999888887766 56688898875 11
Q ss_pred hhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 374 FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 374 ~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
..++...+. ++||.+++|..+.. +++||+++. .+++++++++++|++++++.+.
T Consensus 311 ---~~~~~~~l~-~~gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 311 ---PQKVLAGTV-NEGVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERTLRKLGE 365 (384)
T ss_dssp ---HHHHHHHHH-TTTCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHH-HCCEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 224666665 56999999875432 899999875 6899999999999999998875
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=262.70 Aligned_cols=330 Identities=13% Similarity=0.137 Sum_probs=221.6
Q ss_pred CCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 35 PSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
|-.+|+|+.|+|++|.+.+.+++.+.. .....|.+..+..+||+++|++++ . +++++
T Consensus 2 ~~~~i~~~~~~~~~p~~~~~~a~~~~~-------------~~~~~y~~~~~~~~l~~~la~~~g--------~--~~~~~ 58 (347)
T 1jg8_A 2 PHMMIDLRSDTVTKPTEEMRKAMAQAE-------------VGDDVYGEDPTINELERLAAETFG--------K--EAALF 58 (347)
T ss_dssp ---CEECSCGGGCCCCHHHHHHHHTCC-------------CCCGGGTCCHHHHHHHHHHHHHHT--------C--SEEEE
T ss_pred CceEEEeccccCCCCCHHHHHHHhcCC-------------CCCcccCCChHHHHHHHHHHHHhC--------C--ceEEE
Confidence 346799999999998777777766531 112357666678899999999985 2 36778
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh---hcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR---DLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
++|+++++.+++.+++++||+|+++.|+|..... .+... |++++.+ .+ .++.+|++++++++++.....++++
T Consensus 59 ~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~ 134 (347)
T 1jg8_A 59 VPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLS-GVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTS 134 (347)
T ss_dssp ESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHT-CCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEE
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhhcc-CeEEEEe-cC--CCCccCHHHHHHHhccccccccCce
Confidence 8888899999999999999999999999864332 34445 9998888 43 2456899999988742000012689
Q ss_pred EEEEeCCCCCC-CCCCCHHHHHHHHHHHhhCCeEEEEeccccccc--cCCCCCCccchhhhhhccCcCCCCCCCCcEEEE
Q 037587 192 GVLITNPSNPL-GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV--FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIV 268 (464)
Q Consensus 192 ~vil~~P~NPt-G~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l 268 (464)
+|++++||||| |.++|.+++++|+++|+++|+++|+||+|.... +.+. +...+... .+. ++
T Consensus 135 ~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~-----~~~~~~~~---------~d~--~~ 198 (347)
T 1jg8_A 135 LIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV-----PVKEYAGY---------ADS--VM 198 (347)
T ss_dssp EEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC-----CHHHHHHT---------CSE--EE
T ss_pred EEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC-----ChHHhccc---------ccE--EE
Confidence 99999999999 999999999999999999999999999875211 1122 22222221 133 33
Q ss_pred cCCCcCCCCCccEEEE-EEecCHHHHHHHHHhccc-C---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 269 YSLSKDFSMPGFRVGM-IYSNNERVVSAATKMSSF-G---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 269 ~S~SK~~g~~GlRiG~-l~~~~~~~~~~~~~~~~~-~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
.|+||.+|++ +|+ +++ ++.+.+.+...... . ..+.+.+.++...++.. .+.+++ . .++++.+.+
T Consensus 199 ~s~sK~l~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~---~-~~~~~~l~~ 267 (347)
T 1jg8_A 199 FCLSKGLCAP---VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM---VDRLKE---D-HENARFLAL 267 (347)
T ss_dssp EESSSTTCCS---SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS---STTHHH---H-HHHHHHHHH
T ss_pred EecccccCCC---ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH---HHHHHH---H-HHHHHHHHH
Confidence 4899999743 574 555 45454444333222 1 12334444444444321 111221 2 235577777
Q ss_pred HHHhCCCeee--cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHH
Q 037587 344 GLKVAGIRCL--KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQV 420 (464)
Q Consensus 344 ~l~~~g~~~~--~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~ 420 (464)
.|+++|+.+. ++.+ .|+|++++.. . .+..+++..|. ++||.++++. .+++|++++. .+++++++
T Consensus 268 ~L~~~~~~~~~~~~~~-~~~~~~~~~~--~---~~~~~~~~~l~-~~gi~v~~~~------~~~iRl~~~~~~~~e~i~~ 334 (347)
T 1jg8_A 268 KLKEIGYSVNPEDVKT-NMVILRTDNL--K---VNAHGFIEALR-NSGVLANAVS------DTEIRLVTHKDVSRNDIEE 334 (347)
T ss_dssp HHHHHTCBCCGGGCCS-SEEEEECTTS--S---SCHHHHHHHHH-HHTEECEEEE------TTEEEEECCTTSCHHHHHH
T ss_pred HHHhcCceeccCCCcc-eEEEEEcccc--c---CCHHHHHHHHH-HCCCEEecCC------CCeEEEEeCCCCCHHHHHH
Confidence 8877677652 3455 4799998731 0 11235777775 6799999753 4689999964 68999999
Q ss_pred HHHHHHHHHHh
Q 037587 421 ALQRIKVFAQS 431 (464)
Q Consensus 421 ~l~~l~~~l~~ 431 (464)
++++|++++++
T Consensus 335 ~~~~l~~~l~~ 345 (347)
T 1jg8_A 335 ALNIFEKLFRK 345 (347)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=270.15 Aligned_cols=350 Identities=11% Similarity=0.089 Sum_probs=226.6
Q ss_pred CCCCceEEeecccc--cc--cHHHHHHHHHhhhhhHHhhhcccccccc-cccCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 33 HNPSGIIQMGLAEN--QL--SFDLLESWLASNQEAVELKRNGESLFRE-LALFQDYHGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 33 ~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
.....+|||+.+.+ ++ +++.+.+++.+.... ... ...|.+..+..+|+++|++++. + .
T Consensus 38 ~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~l~~~la~~~~---~---~- 100 (426)
T 1sff_A 38 VEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK----------LSHTCFQVLAYEPYLELCEIMNQKVP---G---D- 100 (426)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTT----------CSCCCTTTEECHHHHHHHHHHHHHSS---C---S-
T ss_pred CCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHh----------CCCccccccCCHHHHHHHHHHHHhCC---c---c-
Confidence 34556899988775 33 456666666554211 011 1134455678899999999973 1 1
Q ss_pred CCCcEEEeCChHHHHHHHHH---HhcCCCCeEEEcCCCCCChhh-hcccCCCcE-------------EEEEecCC---CC
Q 037587 108 DPNKLVLTAGSTAANETLMF---CLADPGDAFLLPTPYYPGFDR-DLKWRPGVE-------------IVPIHCSS---SN 167 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~---~l~~~gd~Vlv~~p~y~~~~~-~~~~~~g~~-------------~~~v~~~~---~~ 167 (464)
.+++|++|+|+++++..++. +++++| .|++++|+|+++.. .+... |.+ ++.++++. ..
T Consensus 101 ~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 178 (426)
T 1sff_A 101 FAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALT-GKVNPYSAGMGLMPGHVYRALYPCPLHGI 178 (426)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHS-SCCTTTTTTSCCCCSSEEEECCCBGGGTB
T ss_pred cccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhc-CCccccccccCCCCCCcEEeCCCcccccc
Confidence 34899999999999999988 677776 89999999987653 33322 432 66666642 12
Q ss_pred CcccCHHHHHHHHHHHhhcCCceEEEEE-eCCCCCCC-CCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccc
Q 037587 168 GFRITISALENAYQQAQTLNLKVKGVLI-TNPSNPLG-TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245 (464)
Q Consensus 168 ~~~~d~~~l~~~i~~~~~~~~~~~~vil-~~P~NPtG-~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~ 245 (464)
++.+|++.|++.+++. ..+.++++|++ ++|+| || .++|.+++++|.++|+++|+++|+||+|.++.+.+. . ..
T Consensus 179 ~~~~d~~~l~~~l~~~-~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~-~~ 253 (426)
T 1sff_A 179 SEDDAIASIHRIFKND-AAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--L-FA 253 (426)
T ss_dssp CHHHHHHHHHHHHHHT-CCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S-SG
T ss_pred chHHHHHHHHHHHHhc-cCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc--h-hh
Confidence 3457899999888631 01126776666 35578 99 788999999999999999999999999997544332 1 11
Q ss_pred hhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCCchhh
Q 037587 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSDKKFT 323 (464)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~ 323 (464)
+ ... +..+.+.||||++|. |+|+||+++++ .+.+.+... ...+..+++.|.++.++++....
T Consensus 254 ~-~~~------------~~~~di~s~sK~~~~-GlriG~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~- 317 (426)
T 1sff_A 254 M-EQM------------GVAPDLTTFAKSIAG-GFPLAGVTGRA-EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ- 317 (426)
T ss_dssp G-GGT------------TSCCSEEEECGGGGT-SSCCEEEEEEH-HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-
T ss_pred h-hhc------------CCCCCEEEEcccccC-CCceEEEEEcH-HHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHh-
Confidence 1 111 112224499999995 99999999954 444433321 22234678888888866652110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----C-CeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 324 CNYMKENRKRLRKRKEMLVSGLKVA----G-IRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~~----g-~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
....+.+++.++++.+.|.++ . +...++. |+|+|++++..... +......+++..++ ++||.+.||.
T Consensus 318 ----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~ 391 (426)
T 1sff_A 318 ----ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCG 391 (426)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEES
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHH-HCCcEEecCC
Confidence 012233333444444444432 2 2333445 56999998532110 11123345777775 5799999987
Q ss_pred CCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 397 SCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 397 ~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.| ++++||+++. .+++++++++++|++++++.
T Consensus 392 ~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 392 PY----YNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp TT----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 64 5789999973 78999999999999998764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-31 Score=264.82 Aligned_cols=340 Identities=15% Similarity=0.104 Sum_probs=231.0
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCC---CcHH--HHHHHH-HHHHHHcCCCCCCCC
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYH---GFPD--AKKELV-KLMARIRGNKVKFDP 109 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~~~--lr~~ia-~~~~~~~~~~~~~~~ 109 (464)
.++|+|+.++|++ ++.+.+++.+.... .....|+... |.+. +++.++ +.+.+.++ +++
T Consensus 23 ~~~i~~~~~~~~~-~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g----~~~ 86 (407)
T 2dkj_A 23 REGLELIASENFV-SKQVREAVGSVLTN-----------KYAEGYPGARYYGGCEVIDRVESLAIERAKALFG----AAW 86 (407)
T ss_dssp HTSEECCTTCCCC-CHHHHHHHTSGGGG-----------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSE
T ss_pred hcceeeccCCCCC-CHHHHHHHHhhhhc-----------CcccCCCcccccCCchHHHHHHHHHHHHHHHHhC----CCc
Confidence 3679999999998 45566665553110 1123455332 4443 444322 24444433 456
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh---hhcccCCCc--EEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD---RDLKWRPGV--EIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~---~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
++|++++|+ +++..++.+++++||.|+++.|+|+.+. ..+... |. .++++++++ +++.+|++.+++.+++.
T Consensus 87 ~~i~~~sGt-~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~- 162 (407)
T 2dkj_A 87 ANVQPHSGS-QANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFS-GKLYKVVSYGVRP-DTELIDLEEVRRLALEH- 162 (407)
T ss_dssp EECCCSSHH-HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHH-HHHSEEEEECCCT-TTSSCCHHHHHHHHHHH-
T ss_pred ceEEecchH-HHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhc-CceEEEEecCCCc-ccCccCHHHHHHHHhhc-
Confidence 667777776 5999999999999999999999999884 344444 66 444444332 35789999999998742
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc-cccCCCCCCccchhhhhhccCcCCCCCCCC
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG-TVFDSPSSSFISIMEAVMDRNIDESDDLWS 263 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (464)
++++|++++|+|| ...+ +++|.++|+++|+++|+||+|.. +.+.+. . .+. + . .
T Consensus 163 ----~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~-~~~--~-~-----------~ 216 (407)
T 2dkj_A 163 ----RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGL--H-PNP--L-P-----------Y 216 (407)
T ss_dssp ----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTC--S-CCC--T-T-----------T
T ss_pred ----CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCc--c-CCc--c-c-----------c
Confidence 6788999999998 4444 78899999999999999999986 333322 1 111 1 1 2
Q ss_pred cEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCC---CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHH
Q 037587 264 RIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL---VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEM 340 (464)
Q Consensus 264 ~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (464)
.++++.|+||.+ +|+|+||++++++.+.+.+......+. .+.....++.+++.... .+++++.++.+++++++
T Consensus 217 ~di~~~s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~ 292 (407)
T 2dkj_A 217 AHVVTSTTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL--QPEFKEYSRLVVENAKR 292 (407)
T ss_dssp CSEEEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHH
T ss_pred ccEEEEeccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHH
Confidence 467899999954 688999999964556555555443322 23333334445554311 24567788888899999
Q ss_pred HHHHHHhCCCeeec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC----CCCCCCeEEEEeec---
Q 037587 341 LVSGLKVAGIRCLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC----HCNEPGWFRICFAN--- 412 (464)
Q Consensus 341 l~~~l~~~g~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f----~~~~~~~~Ris~~~--- 412 (464)
+.+.|++.|+++.. +..++|+|++++... . ...++...| .++||.+++|..| +...++++|++++.
T Consensus 293 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~ 366 (407)
T 2dkj_A 293 LAEELARRGYRIVTGGTDNHLFLVDLRPKG--L---TGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITT 366 (407)
T ss_dssp HHHHHHHTTCEEGGGSCSSSEEEEECGGGT--C---CHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHH
T ss_pred HHHHHHhCCceeecCCCCceEEEEECcccC--C---CHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccc
Confidence 99999988988874 345678999987421 0 122455555 6789999998764 22246789999963
Q ss_pred --CCHHHHHHHHHHHHHHHHh
Q 037587 413 --ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 413 --~~~e~l~~~l~~l~~~l~~ 431 (464)
.+++++++++++|++++++
T Consensus 367 ~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 367 RGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp TTCCGGGHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999999987
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-31 Score=262.30 Aligned_cols=300 Identities=13% Similarity=0.160 Sum_probs=220.1
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCCCC-hhhhcccCCCcEEEEE
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPT-PYYPG-FDRDLKWRPGVEIVPI 161 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~-~~~~~~~~~g~~~~~v 161 (464)
.+..++|++++++++ .+.+++++++|+|+++++..++.+++++||.|++.+ ++|+. +...+... |++++.+
T Consensus 37 ~~~~~l~~~la~~~g------~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v 109 (366)
T 1m32_A 37 GVVEQIRQQLTALAT------ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-GIAHHAY 109 (366)
T ss_dssp TTHHHHHHHHHHHHC------SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-TCCEEEE
T ss_pred HHHHHHHHHHHHHhC------CCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHh-CCceEEE
Confidence 567999999999985 112346899999999999999999999999988776 55543 44555555 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+++. .+.+|+++|++.+++ ..++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.. ..
T Consensus 110 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~---~~-- 175 (366)
T 1m32_A 110 DCGE--VARPDVQAIDAILNA----DPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFG---GI-- 175 (366)
T ss_dssp ECCT--TSCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTT---TS--
T ss_pred eCCC--CCCCCHHHHHHHHhc----CCCeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCcccc---Cc--
Confidence 9863 466899999999875 225788999999999999998 678888999999999999999732 22
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh----------------c--c--
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM----------------S--S-- 301 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~----------------~--~-- 301 (464)
. .++. ..+.++++.|+||+++ ++.++||++++++ +.+.+... . .
T Consensus 176 ~-~~~~-------------~~~~di~~~s~~K~~~-~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (366)
T 1m32_A 176 P-MDIA-------------ALHIDYLISSANKCIQ-GVPGFAFVIAREQ-KLAACKGHSRSLSLDLYAQWRCMEDNHGKW 239 (366)
T ss_dssp C-CCTT-------------TTTCSEEEEESSSTTC-CCSSEEEEEEEHH-HHTTCTTCCSCSTTCHHHHHHHHHHTTTCC
T ss_pred C-cccc-------------ccCccEEEecCccccc-CCCceEEEEECHH-HHHhhcCCCCCccccHHHHHhhhcccCCCC
Confidence 1 1111 1145688999999873 2334799999654 33322111 0 0
Q ss_pred cCCCChHHHHHHHHHcCCchhhHHH--HHHHHHHHHHHHHHHHHHHHhCCCeeecC---CccEEEEEecCcccccCChhH
Q 037587 302 FGLVSSQTQYLLSRMLSDKKFTCNY--MKENRKRLRKRKEMLVSGLKVAGIRCLKS---NAGLFCWVDMRHLLVSNTFEA 376 (464)
Q Consensus 302 ~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~f~~~~l~~~~~~~~~~~ 376 (464)
.++.+...+.++..+++.. .++ +++.++.++++++++.+.|+++|+++..+ .+++++|+.++.... ..
T Consensus 240 ~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 312 (366)
T 1m32_A 240 RFTSPTHTVLAFAQALKEL---AKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQ----YR 312 (366)
T ss_dssp SSCCCHHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTT----CC
T ss_pred CCCCCHHHHHHHHHHHHHH---HHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCC----CC
Confidence 1345667776666666532 233 56678888899999999999888877654 367799999874100 11
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 377 EKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 377 ~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
..++...++ ++||.++||..| ..+++||+++. .+++++++++++|++++++
T Consensus 313 ~~~~~~~l~-~~gi~v~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 313 FSEFYRRLK-EQGFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHHHHH-HTTEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH-HCCEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 234666665 569999999876 36799999987 4799999999999988754
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.8e-31 Score=262.10 Aligned_cols=304 Identities=15% Similarity=0.127 Sum_probs=220.8
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC-------------CCeEEEcCCCCCChhhhcc
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADP-------------GDAFLLPTPYYPGFDRDLK 151 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~ 151 (464)
+..++++.+++++.+.++ +++++|++|+|+++++..++.++..+ ||.|+++.|+|+.+...+.
T Consensus 66 ~~~~~~~~l~~~la~~~~----~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~ 141 (397)
T 3f9t_A 66 GTKLLEEKAVALLGSLLN----NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGRE 141 (397)
T ss_dssp HHHHHHHHHHHHHHHHTT----CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHH
Confidence 446677777777766655 67889999999999999999998776 9999999999999998888
Q ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 152 WRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 152 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
.. |++++.++.++ ++.+|+++|++.+++. ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|
T Consensus 142 ~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~ 210 (397)
T 3f9t_A 142 MM-DLEYIYAPIKE--DYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAF 210 (397)
T ss_dssp HH-TCEEEEECBCT--TSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTT
T ss_pred Hc-CceeEEEeeCC--CCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccc
Confidence 77 99999999874 5778999999998752 6788999999999999976 777888999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCC-------
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL------- 304 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~------- 304 (464)
..+.+...+ .......+.... +-.. +..+++.|++|.++ +|+|+|+++++++.+.+.+.....+..
T Consensus 211 ~~~~~~~~~-~~~~~~~~~~~~----~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (397)
T 3f9t_A 211 GGLVIPFLD-DKYKKKGVNYKF----DFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATI 283 (397)
T ss_dssp GGGTGGGCC-GGGCCTTCCCCC----SGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSS
T ss_pred cchhhhhcc-cccccccccccc----cccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCcccc
Confidence 865442210 000000000000 0002 44577899999875 788999999877655443322222211
Q ss_pred ------CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHH
Q 037587 305 ------VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 305 ------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~ 378 (464)
.+...+.++...+. ...+++..+.++++++++.+.|++.|+++..+..+.++|++++. ..
T Consensus 284 ~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~ 349 (397)
T 3f9t_A 284 LGTRVGFGGACTYAVLRYLG-----REGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDED---------YK 349 (397)
T ss_dssp CSSCCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTT---------HH
T ss_pred ccccccchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCC---------HH
Confidence 12345555555543 23356667777788899999999988875544444577888763 12
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 379 ELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
++...+. ++||.+++|.. ++++||+++. .+++++++++++|+++++
T Consensus 350 ~~~~~l~-~~gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 350 EVCKKLR-DRGIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHH-HTTCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHH-hCCeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 4666665 56999998863 5799999985 689999999999998764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=268.97 Aligned_cols=340 Identities=15% Similarity=0.148 Sum_probs=237.7
Q ss_pred CCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCC------------CCcHHHHHHHHHHHHH
Q 037587 32 LHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDY------------HGFPDAKKELVKLMAR 99 (464)
Q Consensus 32 ~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~------------~g~~~lr~~ia~~~~~ 99 (464)
.....++|.|+.+.+..+++.+.+++.+.. .....|+.+ ....++++.++++++
T Consensus 17 ~~~~~~~iyld~~~~~~~~~~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~- 82 (423)
T 3lvm_A 17 YRAMKLPIYLDYSATTPVDPRVAEKMMQFM-------------TMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG- 82 (423)
T ss_dssp ---CCSSEECBTTTCCCCCHHHHHHHTTSS-------------STTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ccccCCCEeecCCCcCCCCHHHHHHHHHHH-------------hhcccccCCCccccchhHHHHHHHHHHHHHHHHHcC-
Confidence 344567788888777666677777766542 100122211 123567777777764
Q ss_pred HcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC----CCCeEEEcCCCCCChhhhc---ccCCCcEEEEEecCCCCCcccC
Q 037587 100 IRGNKVKFDPNKLVLTAGSTAANETLMFCLAD----PGDAFLLPTPYYPGFDRDL---KWRPGVEIVPIHCSSSNGFRIT 172 (464)
Q Consensus 100 ~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~----~gd~Vlv~~p~y~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d 172 (464)
+++++|++|+|+++++..++.++.. +||.|+++.|+|+.+...+ ... |++++.++.++ ++.+|
T Consensus 83 -------~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d 152 (423)
T 3lvm_A 83 -------ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFEVTYLAPQR--NGIID 152 (423)
T ss_dssp -------CCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHT-TCEEEEECCCT--TSCCC
T ss_pred -------CCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHc-CCEEEEeccCC--CCccC
Confidence 6788999999999999999998874 7999999999999876654 444 99999999874 56789
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhc
Q 037587 173 ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMD 252 (464)
Q Consensus 173 ~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~ 252 (464)
+++|++.+.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+.. .. . .+..
T Consensus 153 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~---~~--~-~~~~----- 212 (423)
T 3lvm_A 153 LKELEAAMRD------DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVG---KL--P-IDLS----- 212 (423)
T ss_dssp HHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTT---TS--C-CCTT-----
T ss_pred HHHHHHhcCC------CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcC---CC--C-cChh-----
Confidence 9999998864 7899999999999999998 667888999999999999998742 11 0 1111
Q ss_pred cCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh---------cccCCCChHHHHHHHHHcCCchhh
Q 037587 253 RNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM---------SSFGLVSSQTQYLLSRMLSDKKFT 323 (464)
Q Consensus 253 ~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~---------~~~~~~s~~~q~~~~~~l~~~~~~ 323 (464)
..+..+++.|+||.+|.+| +||++++++.+.. +... ...++.+...+.++..++.. +
T Consensus 213 --------~~~~di~~~s~sK~~g~~g--~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~ 278 (423)
T 3lvm_A 213 --------QLKVDLMSFSGHKIYGPKG--IGALYVRRKPRVR-IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---A 278 (423)
T ss_dssp --------TSCCSEEEEESTTTTSCSS--CEEEEECBTTBCC-CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---H
T ss_pred --------hcCCCEEEechHHhcCCCC--eEEEEEeccccCC-CCccccCCcccccccCCCCCHHHHHHHHHHHHH---H
Confidence 1245688999999988667 8999986543221 2111 11233455666666555542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCc---cEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC
Q 037587 324 CNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNA---GLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH 399 (464)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~ 399 (464)
.+++++.++.++++++++.+.|+++ |+.+..+.+ +.++++.++.. ...++...+ .+ |.+.+|..|.
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l-~~--i~v~~g~~~~ 348 (423)
T 3lvm_A 279 KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMAL-KD--LAVSSGSACT 348 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTS-------CHHHHHHHT-TT--EECBCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCC-------CHHHHHHHH-hh--heeccCcccc
Confidence 3446778888999999999999888 888876553 23555555321 122355554 34 9999998765
Q ss_pred CCC-----------------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCcccccc
Q 037587 400 CNE-----------------PGWFRICFAN-ITEETLQVALQRIKVFAQSCNPQMLLL 439 (464)
Q Consensus 400 ~~~-----------------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~~~~ 439 (464)
... .+++||+++. .+++++++++++|++++++.+.....+
T Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~ 406 (423)
T 3lvm_A 349 SASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLW 406 (423)
T ss_dssp ---CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSHHH
T ss_pred CCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCccc
Confidence 421 3789999986 688999999999999998887654443
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=262.00 Aligned_cols=298 Identities=12% Similarity=0.098 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCc-EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNK-LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~-i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v~~ 163 (464)
.++++.++++++ .+.++ +++++|+++++..++.+++++||+|+++.|+|.+ +...+... |++++.+++
T Consensus 49 ~~~~~~la~~~~--------~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~ 119 (411)
T 3nnk_A 49 NEVMALYRGVFR--------TENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRC-RAEVHTIEV 119 (411)
T ss_dssp HHHHHHHHHHHT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHc-CCeEEEEec
Confidence 456666666654 45554 7888999999999999999999999999999976 66667666 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
+ .++.+|+++|++.+++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||+++. ... .
T Consensus 120 ~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~---~~~--~- 183 (411)
T 3nnk_A 120 P--WGEVFTPDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASL---GGN--P- 183 (411)
T ss_dssp C--TTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTB---TTB--C-
T ss_pred C--CCCCCCHHHHHHHHhhC-----CCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCccc---CCc--c-
Confidence 5 35678999999999752 7899999999999999987 66788889999999999999873 221 1
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc-----------------------
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS----------------------- 300 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~----------------------- 300 (464)
.... ..+..+++.|+||.++ ++.++||+++++ .+.+.+....
T Consensus 184 ~~~~-------------~~~~d~~~~s~~K~l~-~~~g~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~ 248 (411)
T 3nnk_A 184 LETD-------------VWGLDAVSAGMQKCLG-GPSGTSPITLSA-RMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNY 248 (411)
T ss_dssp CCTT-------------TTTCSEEECCSTTTTC-CCSSEEEEEECH-HHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCST
T ss_pred cchh-------------ccCCcEEEecCccccC-CCCceEEEEECH-HHHHHHhhcccccccccccccccccCCCCcccc
Confidence 1111 2245688999999853 344689999954 4544444322
Q ss_pred ---------------ccCCCChHHHHHHHHHcCCchhhHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeecCCc---cEEE
Q 037587 301 ---------------SFGLVSSQTQYLLSRMLSDKKFTCNY-MKENRKRLRKRKEMLVSGLKVAGIRCLKSNA---GLFC 361 (464)
Q Consensus 301 ---------------~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~f~ 361 (464)
..++.+...+.++..+++.. .+. +++.++.++++++++.+.|++.|+++..+.+ +.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 325 (411)
T 3nnk_A 249 FDLGMVMDYWGPERLNHHTEATTALFGARECARLI---LQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVL 325 (411)
T ss_dssp TCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEE
T ss_pred cchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEE
Confidence 11334556666666655432 223 6777888889999999999998888876543 5688
Q ss_pred EEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHHhhCcc
Q 037587 362 WVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-AN-ITEETLQVALQRIKVFAQSCNPQ 435 (464)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~~~~ 435 (464)
++.++.... ..++...|++++||.+++|.. ....+++||++ +. .+++++++++++|++++++.+..
T Consensus 326 ~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 393 (411)
T 3nnk_A 326 GVVIPQGIN------GDQARKLMLEDFGIEIGTSFG--PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLKFP 393 (411)
T ss_dssp EEECCTTCC------HHHHHHHHHHHHSEEEEECCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCC------HHHHHHHHHHhcCeEEeCccC--CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 888874322 235777777667999998843 23467999998 64 47999999999999999987653
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=264.02 Aligned_cols=363 Identities=11% Similarity=0.044 Sum_probs=219.6
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||++.+ .|++. ++.+.+++.+.. .....|....+..++++++++++.+.++
T Consensus 22 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~la~~~~-- 86 (430)
T 3i4j_A 22 FLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQA-------------ARLPFVHGSQFSSDVLEEYAGRLARFVG-- 86 (430)
T ss_dssp EEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCCCCCTTTCEEHHHHHHHHHHHHHTT--
T ss_pred EEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH-------------HhcccccccccCCHHHHHHHHHHHHhCC--
Confidence 4444455678999987 55653 566666666542 2223344445667788888888877654
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCCCChhhhcccCCCc--------------EEEEEe
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--------DPGDAFLLPTPYYPGFDRDLKWRPGV--------------EIVPIH 162 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~~g~--------------~~~~v~ 162 (464)
.++++|++|+|+++++..++++++ .+++.|++.+|+|+++...+....+. .+..++
T Consensus 87 --~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (430)
T 3i4j_A 87 --LPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLP 164 (430)
T ss_dssp --CTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEEC
T ss_pred --CCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcC
Confidence 567899999999999999999876 34789999999999877554433122 112222
Q ss_pred cCCC-CCcccCHHHHHHHHHHHhhcC-CceEEEEEeCC-CC-CCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccC
Q 037587 163 CSSS-NGFRITISALENAYQQAQTLN-LKVKGVLITNP-SN-PLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFD 237 (464)
Q Consensus 163 ~~~~-~~~~~d~~~l~~~i~~~~~~~-~~~~~vil~~P-~N-PtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~ 237 (464)
.+.. .....|+++|++.+++. + .+++ +++++| +| ++|. +++.+++++|.++|+++|+++|+||+|.++...
T Consensus 165 ~~~~~~~~~~~~~~le~~l~~~---~~~~~~-~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~ 240 (430)
T 3i4j_A 165 KPDPARNGAEDAEGLRALLERE---GPETVA-AFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRC 240 (430)
T ss_dssp CCCTTSCHHHHHTHHHHHHHHH---CGGGEE-EEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred CCcccchhhHHHHHHHHHHHhc---CCCCEE-EEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence 2100 00123568888888642 2 2444 555566 66 8886 668888999999999999999999999985443
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh------cccCCCChHHH
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM------SSFGLVSSQTQ 310 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~------~~~~~~s~~~q 310 (464)
+. . ... ...++ ...+ +.||||+++ +| +|+||+++ ++.+.+.+... ...+..++++|
T Consensus 241 g~--~-~~~-~~~~~--------~~~d---i~t~sK~l~-~G~~r~G~~~~-~~~i~~~~~~~~~~~~~~~t~~~~~~~~ 303 (430)
T 3i4j_A 241 GS--P-LAL-SRWSG--------VTPD---IAVLGKGLA-AGYAPLAGLLA-APQVYETVMGGSGAFMHGFTYAGHPVSV 303 (430)
T ss_dssp SS--S-SGG-GGTTT--------CCCS---EEEECGGGT-TTSSCCEEEEE-CHHHHHHHHHTTCBCCCCCTTTTCHHHH
T ss_pred cc--h-hhh-hhhcC--------CCCc---EEEEccccc-CCccccEEEEE-CHHHHHHHhccCCcccccCCCCCCHHHH
Confidence 32 1 111 11101 1122 337999999 69 99999999 55566655542 23345788999
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccccCC---hhHHHHHHHHHHH
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNT---FEAEKELWKKIIF 386 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~---~~~~~~l~~~ll~ 386 (464)
.++.++|+..+. +++.++.++..+..++.+.+.+.++ ++...++.+. |+++++........ .....+++..++
T Consensus 304 aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 380 (430)
T 3i4j_A 304 AAGLSVLDIVER-EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGL-LLGVVLGDLATGQAFETPGIASRIGAAAL- 380 (430)
T ss_dssp HHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT-EEEEEEC------------CHHHHHHHHH-
T ss_pred HHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEE-EEEEEeccccccCCCccHHHHHHHHHHHH-
Confidence 988888864221 2224444444444444555555444 4555666665 78888753211000 011235667766
Q ss_pred hcCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 387 EVGLNISPGSSCH-CNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 387 ~~gI~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
++||.++|+..+. ....+++||+++. .+++++++++++|++++++.
T Consensus 381 ~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 381 KRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp HTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6799999984322 2236789999874 68999999999999998753
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-31 Score=262.69 Aligned_cols=332 Identities=12% Similarity=0.098 Sum_probs=232.8
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCC----CCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQ----DYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
+.+.|+.+.+..+++.+.+++.+..... . ......|+ ...+..+++++++++++ +++++|
T Consensus 26 ~~~~ld~~~~~~~~~~v~~a~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v 89 (406)
T 3cai_A 26 GWVHFDAPAGMLIPDSVATTVSTAFRRS-----G---ASTVGAHPSARRSAAVLDAAREAVADLVN--------ADPGGV 89 (406)
T ss_dssp SCEECBGGGCCCCCHHHHHHHHHHHHHC-----C---SSSCSSSHHHHHHHHHHHHHHHHHHHHHT--------CCGGGE
T ss_pred CeEEEeCCCcCCCCHHHHHHHHHHHHhc-----C---CCCCCccHHHHHHHHHHHHHHHHHHHHhC--------CCCCeE
Confidence 4688888887766666766666542110 0 00001232 12345788888888885 567899
Q ss_pred EEeCChHHHHHHHHHHh---cCCCCeEEEcCCCCCChhhhccc----CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 113 VLTAGSTAANETLMFCL---ADPGDAFLLPTPYYPGFDRDLKW----RPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
++|+|+++++..++.++ +++||.|+++.|+|+.+...+.. . |++++.+++++ .++.+|++.|++.+++
T Consensus 90 ~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~v~~v~~~~-~~~~~d~~~l~~~l~~--- 164 (406)
T 3cai_A 90 VLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRY-GAKVKWAEVDI-ETGELPTWQWESLISK--- 164 (406)
T ss_dssp EEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHH-BCEEEEECCCT-TTCCCCGGGHHHHCCT---
T ss_pred EEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhc-CCeEEEEecCc-ccCCcCHHHHHHHhCC---
Confidence 99999999999999987 78999999999999876555433 4 89999999873 2457899999988754
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+. +.. . .++..+ +.+
T Consensus 165 ---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~--~-~~~~~~-------------~~d 219 (406)
T 3cai_A 165 ---STRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAA---PYR--L-LDIRET-------------DAD 219 (406)
T ss_dssp ---TEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTT---TTC--C-CCHHHH-------------CCS
T ss_pred ---CceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEccccc---CCC--C-CCchhc-------------CCC
Confidence 7899999999999999987 56788889999999999999973 221 1 122222 456
Q ss_pred EEEcCCCcCCCCCccEEE-EEEecCHHHHHHHHHhcc-----------cCCCChHHHHHHHHHcCCchh-----------
Q 037587 266 HIVYSLSKDFSMPGFRVG-MIYSNNERVVSAATKMSS-----------FGLVSSQTQYLLSRMLSDKKF----------- 322 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG-~l~~~~~~~~~~~~~~~~-----------~~~~s~~~q~~~~~~l~~~~~----------- 322 (464)
+++.|+||.+| ++ +| |+++++ .+.+.+..... .++.+...+.++..+++....
T Consensus 220 ~~~~s~~K~~g-~~--~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~ 295 (406)
T 3cai_A 220 VVTVNAHAWGG-PP--IGAMVFRDP-SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRE 295 (406)
T ss_dssp EEEEEGGGGTS-CS--CEEEEESCH-HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHH
T ss_pred EEEeehhhhcC-CC--cCeEEEEeh-HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhh
Confidence 78999999887 55 89 999854 44433332211 233455555444444431110
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC---ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC-
Q 037587 323 -TCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSN---AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS- 396 (464)
Q Consensus 323 -~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~- 396 (464)
+.+++++.++.++++++++.+.|+++ |+++..+. ++ ++++.++. . ...++...| .++||.+++|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~-~------~~~~~~~~L-~~~gi~v~~g~~ 366 (406)
T 3cai_A 296 RLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHK-V------PADRVVQRL-ADNGILAIANTG 366 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETT-B------CHHHHHHHH-HHTTEECEECCS
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECC-c------CHHHHHHHH-HHCCcEEecCCh
Confidence 02256778888889999999999987 77776653 55 68888763 1 122466666 46799999987
Q ss_pred -----CCCCC-CCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 397 -----SCHCN-EPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 397 -----~f~~~-~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
.|+.. ..+++||+++. .+++++++++++|++
T Consensus 367 ~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 367 SRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp CHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 33321 25789999986 579999999999875
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=257.48 Aligned_cols=299 Identities=16% Similarity=0.165 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPN-KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v~~ 163 (464)
.+++++++++++ .+.+ +|++|+|+++++..++.+++++||+|+++.++|.+ +...+... |++++.+++
T Consensus 59 ~~l~~~la~~~~--------~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 129 (393)
T 3kgw_A 59 EEIKQGIQYVFQ--------TRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRI-GARVHQMIK 129 (393)
T ss_dssp HHHHHHHHHHHT--------CCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHc-CCceEEEeC
Confidence 466666666664 3343 69999999999999999999999999999988742 24445555 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
+. ++.+|+++|++.+++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ ++.. .
T Consensus 130 ~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~---~g~~--~- 193 (393)
T 3kgw_A 130 KP--GEHYTLQEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVAS---LGGV--P- 193 (393)
T ss_dssp CT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---TTTS--C-
T ss_pred CC--CCCCCHHHHHHHHhhC-----CCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCcc---ccCc--c-
Confidence 64 3468999999999753 6889999999999999988 6678888999999999999987 2222 1
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc----------------------
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS---------------------- 301 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~---------------------- 301 (464)
.... ..+..+++.|+||+++ ++.++||+++++ .+.+.+.....
T Consensus 194 ~~~~-------------~~~~d~~~~s~sK~~~-~~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (393)
T 3kgw_A 194 IYMD-------------QQGIDIMYSSSQKVLN-APPGISLISFND-KAKYKVYSRKTKPVSFYTDITYLAKLWGCEGET 258 (393)
T ss_dssp CCTT-------------TTTCCEEEEESSSTTC-CCSSCEEEEECH-HHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSC
T ss_pred cchh-------------hcCCCEEEecCccccc-CCCceeEEEECH-HHHHHHhccCCCCCceeecHHHHHHhhhhcccc
Confidence 1111 1245678899999774 333489999954 44444443211
Q ss_pred ---cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ccEEEEEecCcccccCCh
Q 037587 302 ---FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN----AGLFCWVDMRHLLVSNTF 374 (464)
Q Consensus 302 ---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~f~~~~l~~~~~~~~~ 374 (464)
.++.+...+.++..+++... ...+++.++.++++++++.+.|+++|+++..+. .++++|+.++....
T Consensus 259 ~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---- 332 (393)
T 3kgw_A 259 RVIHHTTPVTSLYCLRESLALIA--EQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYN---- 332 (393)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBC----
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCC----
Confidence 12345666666666654321 233677788889999999999999888876433 35677888874322
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHHhhCcc
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-AN-ITEETLQVALQRIKVFAQSCNPQ 435 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~~~~ 435 (464)
..++...+++++||.+++|..+. ..+++||++ +. .+++++++++++|++++++.+.+
T Consensus 333 --~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 333 --WRDIVSYVLDHFSIEISGGLGPT--EERVLRIGLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp --HHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred --HHHHHHHHHHhCCEEEeCCcccC--CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 23577777766699999987543 467999998 65 48999999999999999887643
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=259.09 Aligned_cols=345 Identities=15% Similarity=0.151 Sum_probs=230.4
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
..+|+..+.++.+ .+.+.+++.. ....|.+..+..+||++|+++++ .+++++|
T Consensus 43 ~ylD~~~~~~~~~~~~~~~~a~~~----------------~~~~y~~~~~~~~l~~~la~~~~----------~~~~~~~ 96 (456)
T 2ez2_A 43 IYIDLLTDSGTNAMSDKQWAGMMM----------------GDEAYAGSENFYHLERTVQELFG----------FKHIVPT 96 (456)
T ss_dssp CSEECSCSSSCCCCCHHHHHHHTT----------------CCCCSSSCHHHHHHHHHHHHHHC----------CSEEEEE
T ss_pred ceeeeccccCCccCCHHHHHHhhc----------------chhhcccChhHHHHHHHHHHHhC----------CCcEEEe
Confidence 3578888776654 3434443321 12357666678899999999985 2479999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCC-CChhhhcccCCCcEEEEEecCCC----C----CcccCHHHHHHHHHHHhhc
Q 037587 116 AGSTAANETLMFCLADPGDAFLLPTPYY-PGFDRDLKWRPGVEIVPIHCSSS----N----GFRITISALENAYQQAQTL 186 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y-~~~~~~~~~~~g~~~~~v~~~~~----~----~~~~d~~~l~~~i~~~~~~ 186 (464)
+|+++++..++.+++++|| +++.|+| +.+...+... |++++.++++++ . +|.+|+++|++++++..
T Consensus 97 ~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~-G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t-- 171 (456)
T 2ez2_A 97 HQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKN-GAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG-- 171 (456)
T ss_dssp SSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHT-TCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHc-CCEEEEecccccccccccccccCCCCHHHHHHHHHhcc--
Confidence 9999999999999999999 7889999 6666667666 999999988631 2 36889999999997521
Q ss_pred CCceEEEEEeCCCC-CCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc----------cccCCCCCCccchhhhhhccCc
Q 037587 187 NLKVKGVLITNPSN-PLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG----------TVFDSPSSSFISIMEAVMDRNI 255 (464)
Q Consensus 187 ~~~~~~vil~~P~N-PtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~----------~~~~~~~~~~~~~~~l~~~~~~ 255 (464)
..++++|++++|+| |||.+++.+++++|+++|+++|+++|+||+|.. ..+.+. .+.++......
T Consensus 172 ~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~--~~~~~~~~~~~--- 246 (456)
T 2ez2_A 172 AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK--SIAEIVHEMFS--- 246 (456)
T ss_dssp GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTS--CHHHHHHHHHT---
T ss_pred ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCc--chhhhhhhhcc---
Confidence 12358999999998 999999999999999999999999999999985 223322 21111101111
Q ss_pred CCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc-------CCCChHHHHH-HHHHcCCchhhHHHH
Q 037587 256 DESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF-------GLVSSQTQYL-LSRMLSDKKFTCNYM 327 (464)
Q Consensus 256 ~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~-------~~~s~~~q~~-~~~~l~~~~~~~~~~ 327 (464)
..+++++ |++|.++ +| |+||++++++.+.+.+...... ...+.....+ +..+++ .+.
T Consensus 247 ------~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~---~~~--- 311 (456)
T 2ez2_A 247 ------YADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE---AMQ--- 311 (456)
T ss_dssp ------TCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH---HTC---
T ss_pred ------cCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHH---HhH---
Confidence 1345545 7888765 77 7899998556565544433221 1223222222 222221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCc---ccccCChhHHHHHHHHHHHhcCeEEeC-CCCCC----
Q 037587 328 KENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRH---LLVSNTFEAEKELWKKIIFEVGLNISP-GSSCH---- 399 (464)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~---~~~~~~~~~~~~l~~~ll~~~gI~v~p-g~~f~---- 399 (464)
+...++..+..+++.+.|.+.|+++..+.+++|+|+++.. ......+ ....++..|++++||.+.+ |..|.
T Consensus 312 ~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~~~~~g~~~~~~~~ 390 (456)
T 2ez2_A 312 YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEF-PAQSLAASIYVETGVRSMERGIISAGRNN 390 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGC-HHHHHHHHHHHHHSEECEEESHHHHCBCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhc-cHHHHHHHHHHhcCeeeecccccccccCc
Confidence 1222223344566777777778888777788899998752 1111111 0223466665778999766 43221
Q ss_pred ------CCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhC
Q 037587 400 ------CNEPGWFRICFAN--ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 400 ------~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 433 (464)
....+++||+++. .+++++++++++|++++++.+
T Consensus 391 ~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 391 VTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp TTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred cccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 1124789999985 489999999999999998755
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=252.31 Aligned_cols=335 Identities=12% Similarity=0.139 Sum_probs=223.0
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
+++|||+.+.+..+++.+.+++.+.. ......|++.....++++.+++++ + .+++|++|
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~l~~~la~~~----g-----~~~~v~~~ 65 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHS------------SGQAGPYGTDELTAQVKRKFCEIF----E-----RDVEVFLV 65 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTT------------SSCCCSTTCSHHHHHHHHHHHHHH----T-----SCCEEEEE
T ss_pred CceEeeccCCccCCCHHHHHHHHhhc------------cCcccccccchHHHHHHHHHHHHh----C-----CCCcEEEe
Confidence 46789998755555677777766531 011233433222344555555554 3 24569999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh--cccCC-CcEEEEEecCCCCCcccCHHHHHH-HHHHHh-hcCCce
Q 037587 116 AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD--LKWRP-GVEIVPIHCSSSNGFRITISALEN-AYQQAQ-TLNLKV 190 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~-~i~~~~-~~~~~~ 190 (464)
+|+++++..++.+++++||.|+++.|+|..+... +.... |++++.++.+ ++.+|+++|++ .+++.. ..++++
T Consensus 66 ~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 66 PTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp SCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred CCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCc
Confidence 9999999999999999999999999998765544 44333 8888888864 46789999998 775210 112368
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccccc--CCCCCCccchhhhhhccCcCCCCCCCCcEEEE
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF--DSPSSSFISIMEAVMDRNIDESDDLWSRIHIV 268 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l 268 (464)
++|++++||| ||.++|.+++++|+++|+++|+++|+|++|..+.+ .+. . .....+.. . .. +++
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~-~~~~~~~~---------~-~d-~~~ 207 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC--S-PAEMTWKA---------G-VD-ALS 207 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC--C-TTTTTGGG---------T-CC-EEE
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC--C-HHHhhhhh---------c-CC-EEE
Confidence 9999999987 99999999999999999999999999999975321 121 1 11111101 1 12 335
Q ss_pred cCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc-CC---CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037587 269 YSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF-GL---VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344 (464)
Q Consensus 269 ~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~-~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (464)
.|+||. |. .+..||++++++ +.+.+...... .. .+...+..+...+.+..+ .+..+.++++++++.+.
T Consensus 208 ~s~sK~-g~-~~G~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~ 279 (356)
T 1v72_A 208 FGATKN-GV-LAAEAIVLFNTS-LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQG 279 (356)
T ss_dssp ECCGGG-TC-SSCEEEEESSGG-GHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHH
T ss_pred EecccC-CC-cCccEEEEECHH-HHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHH
Confidence 599998 43 233458887544 44433332211 11 122334444555655322 23455567778889999
Q ss_pred HHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHH
Q 037587 345 LKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVAL 422 (464)
Q Consensus 345 l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 422 (464)
|+++ |+++..+.+++|+|++++. +++..|. ++||.++||. |+ ++++||+++. .+++++++++
T Consensus 280 L~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~l~-~~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~ 343 (356)
T 1v72_A 280 LEGLGGVEVLGGTEANILFCRLDS-----------AMIDALL-KAGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLL 343 (356)
T ss_dssp HTTCTTEEEESCCCSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHH
T ss_pred HhhCCCcEEccCCCccEEEEEcCH-----------HHHHHHH-hcCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHH
Confidence 9885 8887666677799998862 3666664 6799999987 54 6799999875 5899999999
Q ss_pred HHHHHHHHhhC
Q 037587 423 QRIKVFAQSCN 433 (464)
Q Consensus 423 ~~l~~~l~~~~ 433 (464)
++|++++++.+
T Consensus 344 ~~l~~~l~~~~ 354 (356)
T 1v72_A 344 NQVRLAADRTQ 354 (356)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHHHhhc
Confidence 99999876543
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=258.77 Aligned_cols=337 Identities=13% Similarity=0.073 Sum_probs=222.7
Q ss_pred CCCCceEEeeccc--ccc--c-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 33 HNPSGIIQMGLAE--NQL--S-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 33 ~~~~~~i~l~~~~--n~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
.....+||++.+. |++ + ++.+.+++.+... ....|....+..+++..+++.+.+.++ +
T Consensus 39 ~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~la~~~~----~ 101 (419)
T 2eo5_A 39 VDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQ-------------KLAHAAANDFYNIPQLELAKKLVTYSP----G 101 (419)
T ss_dssp TTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHT-------------TSCCCSCSCSCCHHHHHHHHHHHHHSS----C
T ss_pred CCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHh-------------hCccccccccCCHHHHHHHHHHHHhCC----C
Confidence 3455689998887 455 2 4667776665421 111232222334455555555555544 4
Q ss_pred C-CCcEEEeCChHHHHHHHHHHhcC-CCCeEEEcCCCCCChhhhcccC-------------CCcEEEEEecCCCCCcc--
Q 037587 108 D-PNKLVLTAGSTAANETLMFCLAD-PGDAFLLPTPYYPGFDRDLKWR-------------PGVEIVPIHCSSSNGFR-- 170 (464)
Q Consensus 108 ~-~~~i~it~G~~~al~~~~~~l~~-~gd~Vlv~~p~y~~~~~~~~~~-------------~g~~~~~v~~~~~~~~~-- 170 (464)
+ +++|++|+|+++++..+++++.. +||.|++.+|+|+++....... .+..++.++.+. .|.
T Consensus 102 ~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~ 179 (419)
T 2eo5_A 102 NFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPN--PYRNP 179 (419)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCC--SSSCT
T ss_pred CcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCc--ccccc
Confidence 4 78999999999999999987643 4899999999998654321100 023566676642 222
Q ss_pred --------------cCHHHHH-HHHHHHhhcC-CceEEEEEeCCC-CCCCC-CCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 171 --------------ITISALE-NAYQQAQTLN-LKVKGVLITNPS-NPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 171 --------------~d~~~l~-~~i~~~~~~~-~~~~~vil~~P~-NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
+|+++|+ +.+++. .+ .+++ +++++|+ ||||. +.+.+++++|.++|+++|+++|+||+|.
T Consensus 180 ~g~~~~~~~~~~~~~~~~~l~~~~i~~~--~~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~ 256 (419)
T 2eo5_A 180 WHINGYENPSELVNRVIEFIEDYIFVNL--VPPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM 256 (419)
T ss_dssp TCCCTTTCHHHHHHHHHHHHHHTHHHHT--CCGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred ccccccccchhhHHHHHHHHHHHHHhhc--cCCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 3578888 877631 01 2454 5667785 67896 6688889999999999999999999999
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHH-HhcccCCCChHHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAAT-KMSSFGLVSSQTQ 310 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~-~~~~~~~~s~~~q 310 (464)
++.+.+. . .. ..... ...+++ ||||.|| +| +|+||++++++.+ . +. .....++.++++|
T Consensus 257 ~~g~~g~--~-~~-~~~~~---------~~~d~~---t~sK~~~-~G~~riG~~~~~~~~~-~-~~~~~~~t~~~n~~~~ 317 (419)
T 2eo5_A 257 GLGRTGK--L-FA-IENFN---------TVPDVI---TLAKALG-GGIMPIGATIFRKDLD-F-KPGMHSNTFGGNALAC 317 (419)
T ss_dssp TTTTTSS--S-SG-GGGGT---------CCCSEE---EECGGGG-TTTSCCEEEEEEGGGC-C-C------CCCCCHHHH
T ss_pred CCccCcc--h-hh-HHhcC---------CCCCEE---Eeccccc-CCccceEEEEEchHhh-c-CCcccCCCCCCCHHHH
Confidence 7544332 1 11 11211 113333 8999999 69 9999999966543 2 32 2233345788999
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCe
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGL 390 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI 390 (464)
.++.++++.. . +.++.++++++++.+.|+++ +...++.+ .|+|+++.... .... ++..++ ++||
T Consensus 318 ~aa~aal~~~---~----~~~~~~~~~~~~l~~~L~~~-~~~~~~~g-~~~~i~~~~~~-----~~~~-~~~~l~-~~Gv 381 (419)
T 2eo5_A 318 AIGSKVIDIV---K----DLLPHVNEIGKIFAEELQGL-ADDVRGIG-LAWGLEYNEKK-----VRDR-IIGESF-KRGL 381 (419)
T ss_dssp HHHHHHHHHH---H----HHHHHHHHHHHHHHHHHTTS-SSEEEEET-TEEEEECSCHH-----HHHH-HHHHHH-HTTE
T ss_pred HHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHh-hhheEeee-EEEEEEEecCc-----cHHH-HHHHHH-HCCC
Confidence 9988888632 2 26677788889999999876 44445555 47888884210 1123 666665 7899
Q ss_pred EEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 391 NISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 391 ~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.++|+. .+++||+++. .+++++++++++|++++++.
T Consensus 382 ~v~~~~------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 382 LLLPAG------RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999863 5689998764 68999999999999998753
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=255.10 Aligned_cols=298 Identities=14% Similarity=0.158 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEE-EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLV-LTAGSTAANETLMFCLADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~-it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v~~ 163 (464)
.++++.++++++ +++++++ +++|+++++..++.+++++||.|++++|+|.+ +...+... |++++.+++
T Consensus 47 ~~l~~~la~~~g--------~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~ 117 (416)
T 3isl_A 47 NETMEMLRELFQ--------TKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERY-GANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHTT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhc-CCeeEEEec
Confidence 455555665554 5666665 88999999999999999999999999999986 55566666 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
+. ++.+|++++++.+++. ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+. ... .
T Consensus 118 ~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---~~~--~- 181 (416)
T 3isl_A 118 EW--GTVFDPEDIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATI---GGC--E- 181 (416)
T ss_dssp CT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTT---TTS--C-
T ss_pred CC--CCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccc---cCC--C-
Confidence 74 4578999999999742 7899999999999999988 67788899999999999999873 221 1
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc-----------------------
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS----------------------- 300 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~----------------------- 300 (464)
.+.. ..+..+++.|+||.++ ++.++|+++++++ +.+.+....
T Consensus 182 ~~~~-------------~~~~d~~~~s~~K~l~-g~~g~g~~~~~~~-~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~ 246 (416)
T 3isl_A 182 VKVD-------------EWKIDAAIGGTQKCLS-VPSGMAPITYNER-VADVIAARKKVERGIATQADRAALSGNRPITS 246 (416)
T ss_dssp CCTT-------------TTTCSEEECCSSSTTC-CCSSEEEEEECHH-HHHHHHTC------------------CCCCSC
T ss_pred cchh-------------hcCCCEEEecCccccC-CCCCeEEEEECHH-HHHHhhccccccccccccccchhccCCCCCCc
Confidence 1111 1245688999999753 3445899998544 444443210
Q ss_pred -----------------ccCCCChHHHHHHHHHcCCchhhHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeecCCc---cE
Q 037587 301 -----------------SFGLVSSQTQYLLSRMLSDKKFTCNY-MKENRKRLRKRKEMLVSGLKVAGIRCLKSNA---GL 359 (464)
Q Consensus 301 -----------------~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~ 359 (464)
..++.+...+.++.++++.. .++ +++.++.++++++++.+.|++.|+++..+.+ +.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 323 (416)
T 3isl_A 247 NYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLV---LEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPV 323 (416)
T ss_dssp STTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTT
T ss_pred cccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCc
Confidence 12244566666666665432 333 6778888899999999999998888876653 56
Q ss_pred EEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHH-HHHHHHHHHHHHHhhCcc
Q 037587 360 FCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEET-LQVALQRIKVFAQSCNPQ 435 (464)
Q Consensus 360 f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~-l~~~l~~l~~~l~~~~~~ 435 (464)
++++.++.... ..++...|++++||.+++|... ..++++||++.. .++++ +++++++|++++++....
T Consensus 324 ~~~~~~~~~~~------~~~l~~~L~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 393 (416)
T 3isl_A 324 VTCVEIPGGID------GESVRDMLLAQFGIEIASSFGP--LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAG 393 (416)
T ss_dssp EEEEECCTTCC------HHHHHHHHHHHHCEECBCCCST--TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCC------HHHHHHHHHHhCCEEEecCCCC--CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 88888864322 2357777776669999998742 346799999943 45556 999999999999987643
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-31 Score=261.84 Aligned_cols=324 Identities=16% Similarity=0.127 Sum_probs=225.0
Q ss_pred CCCCceEEeecccc--cc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 33 HNPSGIIQMGLAEN--QL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 33 ~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
.....+|||+.+.+ ++ +++.+.+++.+.... .+ .....|+ ..+..+++++++++++ +
T Consensus 25 ~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~-----~~----~~~~~y~-~~~~~~l~~~la~~~g--------~- 85 (375)
T 2eh6_A 25 EEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEK-----LL----HVSNLYE-NPWQEELAHKLVKHFW--------T- 85 (375)
T ss_dssp TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHH-----CS----CCCTTBC-CHHHHHHHHHHHHTSS--------S-
T ss_pred CCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHh-----cc----ccCcccC-CHHHHHHHHHHHhhcC--------C-
Confidence 34557899998763 44 456666666654211 00 1123564 3467889999998864 4
Q ss_pred CCcEEEeCChHHHHHHHHHH---hc---CCC-CeEEEcCCCCCChhhhcccCCCc-------E-----EEEEecCCCCCc
Q 037587 109 PNKLVLTAGSTAANETLMFC---LA---DPG-DAFLLPTPYYPGFDRDLKWRPGV-------E-----IVPIHCSSSNGF 169 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~---l~---~~g-d~Vlv~~p~y~~~~~~~~~~~g~-------~-----~~~v~~~~~~~~ 169 (464)
+++|++|+|+++++..++.+ +. ++| |+|++++|+|+.+...+....+. . +..++.
T Consensus 86 ~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 159 (375)
T 2eh6_A 86 EGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL------ 159 (375)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT------
T ss_pred CCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC------
Confidence 48999999999999999875 45 788 99999999998876544332121 1 333331
Q ss_pred ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhh
Q 037587 170 RITISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248 (464)
Q Consensus 170 ~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~ 248 (464)
.|+++|++.+++ ++++|++++|+||||.+ .+.+++++|.++|+++|+++|+||+|.++.+.+. . .++..
T Consensus 160 -~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~-~~~~~ 229 (375)
T 2eh6_A 160 -NDIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE--F-YAYQH 229 (375)
T ss_dssp -TCHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S-SGGGG
T ss_pred -chHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--c-hhhhh
Confidence 478888887653 78999999999999998 4688899999999999999999999997433222 1 12211
Q ss_pred hhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHHcCCchhhHHH
Q 037587 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRMLSDKKFTCNY 326 (464)
Q Consensus 249 l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 326 (464)
+ . ...+++ ||||.++ +|+|+||+++++ .+.+.+.. ....+.++++.|.++.++++..
T Consensus 230 ~-~---------~~~d~~---s~SK~~~-~g~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 288 (375)
T 2eh6_A 230 F-N---------LKPDVI---ALAKGLG-GGVPIGAILARE-EVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV------ 288 (375)
T ss_dssp G-T---------CCCSEE---EECGGGG-TTSCCEEEEEEH-HHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH------
T ss_pred c-C---------CCCCEE---EEccccc-CCCCeEEEEEcH-HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH------
Confidence 1 1 112333 8999999 799999999954 44443333 2222346778888777766532
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 037587 327 MKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWF 406 (464)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 406 (464)
.+.++.++++++++.+.|++++....++. |+|+|++++.. ..+++..++ ++||.+.|+. ++++
T Consensus 289 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-g~~~~~~~~~~--------~~~~~~~l~-~~gi~~~~~~------~~~i 351 (375)
T 2eh6_A 289 -EKLLPHVREVGNYFKEKLKELGKGKVKGR-GLMLGLELERE--------CKDYVLKAL-EKGLLINCTA------GKVL 351 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSSEEEEE-TTEEEEECSSC--------CHHHHHHHH-HTTEECEEET------TTEE
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCceEE-EEEEEEEEcCc--------HHHHHHHHH-HCCCEEecCC------CCEE
Confidence 15566777788889999988765444444 46899998741 124666665 5799999862 5789
Q ss_pred EEEeec-CCHHHHHHHHHHHHHHH
Q 037587 407 RICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 407 Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
||+++. .+++++++++++|++++
T Consensus 352 Ri~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 352 RFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC
Confidence 999874 68999999999998753
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=255.85 Aligned_cols=295 Identities=13% Similarity=0.055 Sum_probs=215.6
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEEEe
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVPIH 162 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~v~ 162 (464)
+..++|++++++++ .+.++++|++|+|+++++..++.++++ |+|++++|+|+.+ ...+... |++++.++
T Consensus 34 ~~~~l~~~la~~~g------~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 104 (353)
T 2yrr_A 34 VNRAIQERLAALFD------PGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAALH-GLDPEVLD 104 (353)
T ss_dssp HHHHHHHHHHHHHC------CCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHHHHHHhC------CCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHc-CCceEEEe
Confidence 45788888888875 223478899999999999999999876 8999999998764 3334555 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
+++ ++.+|++.+++.+++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|. ++.. .
T Consensus 105 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~---~~~~--~ 169 (353)
T 2yrr_A 105 FPP--GEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTT---LGML--P 169 (353)
T ss_dssp CCT--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTT---TTTS--C
T ss_pred CCC--CCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcc---cccc--c
Confidence 864 4678999999988641 6788999999999999988 5678888999999999999996 3322 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHHH-----------------HhcccCC
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAAT-----------------KMSSFGL 304 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~-----------------~~~~~~~ 304 (464)
.++..+ +..+++.|++|++ |.+| +||++++++.+ +.++ .....++
T Consensus 170 -~~~~~~-------------~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 2yrr_A 170 -FSMRAM-------------GVDYAFTGSQKCLSAPPG--LAPIAASLEAR-KAFTGKRGWYLDLARVAEHWERGGYHHT 232 (353)
T ss_dssp -CCHHHH-------------TCSEEECCTTSTTCCCSS--CEEEEECHHHH-HHCCCCSCSTTCHHHHHHHHTTCCCSSC
T ss_pred -cccccc-------------CceEEEecCcccccCCCc--eEEEEECHHHH-HHhccCCCccccHHHHhhhhhcCCCCCC
Confidence 222222 3346788999965 5566 69999965433 3222 1112234
Q ss_pred CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC--ccEEEEEecCcccccCChhHHHHHHH
Q 037587 305 VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN--AGLFCWVDMRHLLVSNTFEAEKELWK 382 (464)
Q Consensus 305 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~g~f~~~~l~~~~~~~~~~~~~~l~~ 382 (464)
.+...+.++..+++... ...+++.++.++++++++.+.|++.|+++.++. +++++|++++.... ..++..
T Consensus 233 ~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 304 (353)
T 2yrr_A 233 TPVLLHYALLEALDLVL--EEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVD------ADRLVR 304 (353)
T ss_dssp CCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCC------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCC------HHHHHH
Confidence 56666666666654321 122667788888899999999988888877654 66677888863221 224666
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHH-HHHHHHHHHHHh
Q 037587 383 KIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQ-VALQRIKVFAQS 431 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~-~~l~~l~~~l~~ 431 (464)
.+. ++||.+++|..|. .++++||++.. .++++++ +++++|+++++.
T Consensus 305 ~l~-~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 305 ALY-AEGVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp HHH-HTTEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HHH-HCCEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 665 5699999998664 36789999943 6788898 999999998764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=256.64 Aligned_cols=328 Identities=16% Similarity=0.124 Sum_probs=223.1
Q ss_pred CCCCCCCCceEEeeccccccc----HHHHHHHHHhhhhhHHhhhccccccccc-ccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 29 YDQLHNPSGIIQMGLAENQLS----FDLLESWLASNQEAVELKRNGESLFREL-ALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
|..+.....+||++.+.++.+ ++.+.+++.+.... .... ..|+. .-..++++.++++++
T Consensus 29 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~----------~~~~~~~~~~-~~~~~l~~~la~~~g----- 92 (392)
T 3ruy_A 29 WVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANR----------VTLTSRAFHS-DQLGPWYEKVAKLTN----- 92 (392)
T ss_dssp EEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT----------CSCCCTTSEE-TTHHHHHHHHHHHHT-----
T ss_pred EEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHh----------ccccccccCC-HHHHHHHHHHHHhcC-----
Confidence 333344567899998765533 46666666654211 0110 11221 234566666666652
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcCC----------CCeEEEcCCCCCChhhhcccCCCc------------EEEEE
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLADP----------GDAFLLPTPYYPGFDRDLKWRPGV------------EIVPI 161 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~~----------gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v 161 (464)
++++++|+|+++++..++.++..+ +|.|+++.|+|+++...+....+. .+..+
T Consensus 93 -----~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (392)
T 3ruy_A 93 -----KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI 167 (392)
T ss_dssp -----CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEE
T ss_pred -----CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeee
Confidence 679999999999999999987644 689999999997665443222111 23344
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHH-HHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQE-LNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~-l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+. .|+++|++.++. ++++|++++|+||||.+++.++ +++|.++|+++|+++|+||+|.++.+.+.
T Consensus 168 ~~-------~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~- 233 (392)
T 3ruy_A 168 PY-------GDLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK- 233 (392)
T ss_dssp CT-------TCHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS-
T ss_pred Cc-------ccHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc-
Confidence 32 178999988753 8999999999999999996666 99999999999999999999987544333
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRML 317 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l 317 (464)
.+ .. .... ...+++ ||||.++ +| +|+||+++++ .+.+.+.... ..++.+++.+.++.+++
T Consensus 234 -~~-~~-~~~~---------~~~d~~---~~SK~l~-gG~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 296 (392)
T 3ruy_A 234 -VF-AC-DWDN---------VTPDMY---ILGKALG-GGVFPISCAAANR-DILGVFEPGSHGSTFGGNPLACAVSIAAL 296 (392)
T ss_dssp -SS-GG-GGGT---------CCCSEE---EECGGGG-TTTSCCEEEEECH-HHHTTCCTTSSCCSSTTCHHHHHHHHHHH
T ss_pred -ch-hh-hccC---------CCCCEE---EEchhhh-CChhhhEEEEECH-HHHhhhccCCcCCCCCCCHHHHHHHHHHH
Confidence 11 11 1111 112333 7899886 57 9999999954 4444333222 23457888888888887
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC---CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeC
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG---IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP 394 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~p 394 (464)
+... . ++.++.++++++++.+.|++++ +...++.++ |+++.++. . ..++...++ ++||.++|
T Consensus 297 ~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~-~~~~~~~~--~------~~~l~~~l~-~~gi~v~~ 361 (392)
T 3ruy_A 297 EVLE---E--EKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGL-FIGIELNE--P------ARPYCEQLK-AAGLLCKE 361 (392)
T ss_dssp HHHH---H--TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETT-EEEEEESS--C------SHHHHHHHH-TTTEECCC
T ss_pred HHHH---h--hhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeee-EEEEEEcc--h------HHHHHHHHH-HCCcEEec
Confidence 6432 1 4567778888899999998875 444555666 56666764 1 124666665 78999998
Q ss_pred CCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 395 GSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 395 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
|. ++++||+++. .+++++++++++|++++
T Consensus 362 ~~------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 362 TH------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp BT------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CC------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 74 5789999765 68999999999999876
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=249.37 Aligned_cols=299 Identities=13% Similarity=0.048 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHcCCCCCC-CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh---hcccCCCcEEEEEec
Q 037587 88 DAKKELVKLMARIRGNKVKF-DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR---DLKWRPGVEIVPIHC 163 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~-~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~~g~~~~~v~~ 163 (464)
.+.+.+++.+.+.+| + +++++++++|+++++..++.++ +||+|+++.|+|+++.. .+... |++++.+ .
T Consensus 58 ~~~~~~~~~~a~~~g----~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~-g~~~~~v-~ 129 (374)
T 2aeu_A 58 YFAEKVNEYGLKHLG----GDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIV-NAKYFES-D 129 (374)
T ss_dssp HHHHHHHHHHHHHHT----CCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHT-TCEEEEE-S
T ss_pred HHHHHHHHHHHHHhC----CCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHc-CcEEEEe-C
Confidence 444556655555444 3 3478999999999999999988 99999999999887554 45555 9988877 1
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEE-EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKG-VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~-vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
|++++++. . +++++ |++++||||||. +..++++|.++|+++|+++|+||+|+.+..... .
T Consensus 130 --------d~~~l~~~-~------~~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~--~ 190 (374)
T 2aeu_A 130 --------KVGEILNK-I------DKDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF--N 190 (374)
T ss_dssp --------CHHHHHTT-C------CTTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT--T
T ss_pred --------CHHHHHhc-C------CCccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc--c
Confidence 67777765 2 37899 899999999997 778999999999999999999999986521011 0
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-cC-CCChHHHHHHHHHcCCc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-FG-LVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-~~-~~s~~~q~~~~~~l~~~ 320 (464)
..+...+ +.+++++|+||++ +|+|+||+++++ .+.+.+..... +. +++++.+.++..++...
T Consensus 191 ~~~~~~~-------------~~di~~~S~sK~l--~g~~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~ 254 (374)
T 2aeu_A 191 QPPALKL-------------GADLVVTSTDKLM--EGPRGGLLAGKK-ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNF 254 (374)
T ss_dssp CCCHHHH-------------TCSEEEEETTSSS--SSCSCEEEEEEH-HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHC
T ss_pred cCCcccc-------------CCcEEEecCcccc--cCcceEEEEECH-HHHHHHHHhhccccCCCCHHHHHHHHHHHHHH
Confidence 0112222 3457889999985 578999999854 45555544333 22 35778888877777643
Q ss_pred hh--hHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe
Q 037587 321 KF--TCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS 393 (464)
Q Consensus 321 ~~--~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~ 393 (464)
.. +.++.+..+...+++++.+.+.|... |+.+.+ +.+.+|.|.+++.... .....+++..+++++||.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~ 331 (374)
T 2aeu_A 255 NLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTIN---IKKLIEIGFNLLKNYGIITI 331 (374)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHH---HHHHHHHHHHHHHHHCEECS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccccccc---ccchHHHHHHHHHhCCEEEe
Confidence 21 11111111111112245666666653 566654 4444445555442110 01223466677878899999
Q ss_pred CCCCCCCCCCCeEEEEeecC--CHHHHHHHHHHHHHHHHhhC
Q 037587 394 PGSSCHCNEPGWFRICFANI--TEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 394 pg~~f~~~~~~~~Ris~~~~--~~e~l~~~l~~l~~~l~~~~ 433 (464)
||..|. ...+++||+++.. .+++++++++.|++++++..
T Consensus 332 ~g~~~~-~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 332 TVAGMP-GASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp TTSSSC-SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCC-CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 998774 3467899999752 23348888888888887754
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=257.03 Aligned_cols=327 Identities=14% Similarity=0.119 Sum_probs=221.2
Q ss_pred CCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 33 HNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 33 ~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
.....+|||+.+. +++ +++.+.+++.+.... ...+.. ....++++.+++.+.+.++
T Consensus 37 ~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~-------------~~~~~~-~~~~~~~~~l~~~la~~~g------ 96 (397)
T 2ord_A 37 EKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEK-------------LIHCSN-LFWNRPQMELAELLSKNTF------ 96 (397)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHH-------------CSCCCT-TSEEHHHHHHHHHHHHTTT------
T ss_pred CCCCEEEECCccccccccCCCCHHHHHHHHHHHHh-------------cccCcc-ccCCHHHHHHHHHHHHhcC------
Confidence 3455688998763 555 346666666654211 111111 1123455555555554332
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC------C-CCeEEEcCCCCCChhh-hcccCCCcE------------EEEEecCCCCC
Q 037587 109 PNKLVLTAGSTAANETLMFCLAD------P-GDAFLLPTPYYPGFDR-DLKWRPGVE------------IVPIHCSSSNG 168 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~------~-gd~Vlv~~p~y~~~~~-~~~~~~g~~------------~~~v~~~~~~~ 168 (464)
+++|++|+|+++++..++.++.. + ++.|++.+|+|++... .+... |.+ ++.++.
T Consensus 97 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~-g~~~~~~~~~p~~~~~~~~~~----- 170 (397)
T 2ord_A 97 GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT-GQPKYQKPFEPLVPGFEYFEF----- 170 (397)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS-BCHHHHGGGCSCCTTEEEECT-----
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc-CChhhccccCCCCCCeeEecC-----
Confidence 57999999999999999998763 4 4789999999976544 44444 655 666664
Q ss_pred cccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchh
Q 037587 169 FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIM 247 (464)
Q Consensus 169 ~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~ 247 (464)
.|+++|++.+++ ++++|++++|+||||. +++.+++++|+++|+++|+++|+||+|.++.+.+. . .++.
T Consensus 171 --~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~-~~~~ 239 (397)
T 2ord_A 171 --NNVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK--L-FAYQ 239 (397)
T ss_dssp --TCHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S-SHHH
T ss_pred --CCHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc--c-hhhh
Confidence 278999887753 7899999999999999 99999999999999999999999999987544332 1 2222
Q ss_pred hhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHHcCCchhhHH
Q 037587 248 EAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRMLSDKKFTCN 325 (464)
Q Consensus 248 ~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~ 325 (464)
.+ . ....++ ||||.++ +|+|+||++++++.+ .+.. ....+..+++.|.++.++++..+.
T Consensus 240 ~~-~---------~~~d~~---s~sK~~~-~G~r~G~~~~~~~~~--~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--- 300 (397)
T 2ord_A 240 KY-G---------VVPDVL---TTAKGLG-GGVPIGAVIVNERAN--VLEPGDHGTTFGGNPLACRAGVTVIKELTK--- 300 (397)
T ss_dssp HH-T---------CCCSEE---EECGGGG-TTSCCEEEEECSTTC--CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS---
T ss_pred hh-C---------CCCCee---eeccccC-CCcCeEEEEEchHhc--ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh---
Confidence 22 1 112222 8899999 999999999976533 3321 122234678888888777754221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCee---ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 326 YMKENRKRLRKRKEMLVSGLKVA--GIRC---LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~~--g~~~---~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
++.++.++++++++.+.|++. ++++ .++.+ .|+|++++... ...+++..|+ ++||.+.||.
T Consensus 301 --~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~~~~~~~~------~~~~l~~~l~-~~gi~v~~~~---- 366 (397)
T 2ord_A 301 --EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMG-LMIGIQFREEV------SNREVATKCF-ENKLLVVPAG---- 366 (397)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET-TEEEEEECTTS------CHHHHHHHHH-HTTEECEEET----
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEe-EEEEEEECChH------HHHHHHHHHH-HCCCEEccCC----
Confidence 234556667777777777664 2332 23444 58888887421 1235667765 5799999873
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 401 NEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 401 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
++++||+++. .+++++++++++|++++++
T Consensus 367 --~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 367 --NNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred --CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 5789999764 6899999999999998763
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=250.22 Aligned_cols=334 Identities=13% Similarity=0.106 Sum_probs=220.5
Q ss_pred CCCCCceEEeeccc--cccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 32 LHNPSGIIQMGLAE--NQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 32 ~~~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
+.+...+||++.+. +++. ++.+.+++.+.. .....++.. ...+.++.+++.+.+.++
T Consensus 35 ~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~-------------~~~~~~~~~-~~~~~~~~l~~~la~~~~----- 95 (406)
T 4adb_A 35 DQQGKEYIDFAGGIAVNALGHAHPELREALNEQA-------------SKFWHTGNG-YTNEPVLRLAKKLIDATF----- 95 (406)
T ss_dssp ETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-------------TTCSCCCTT-SCCHHHHHHHHHHHHHSS-----
T ss_pred eCCCCEEEECCCchhhcccCCCCHHHHHHHHHHH-------------HhcccccCC-cCCHHHHHHHHHHHhhCC-----
Confidence 34456789999873 4442 466666665532 111111111 112344555555544432
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCC------------cEEEEEecCCCC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPG------------VEIVPIHCSSSN 167 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~~ 167 (464)
.++|++|+|+++++..++.++.. +| |.|++++|+|+++...+....+ ..+..++.
T Consensus 96 -~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 170 (406)
T 4adb_A 96 -ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY---- 170 (406)
T ss_dssp -CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT----
T ss_pred -CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC----
Confidence 45999999999999999998864 56 9999999999987544332212 24444443
Q ss_pred CcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccc
Q 037587 168 GFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM--THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245 (464)
Q Consensus 168 ~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~--s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~ 245 (464)
.|+++|++.+.. ++++|+++ |+||||.++ +.+++++|+++|+++|+++|+||+|.++.+.+. .+ .
T Consensus 171 ---~d~~~l~~~l~~------~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~-~ 237 (406)
T 4adb_A 171 ---NDINSASALIDD------STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE--LY-A 237 (406)
T ss_dssp ---TCHHHHHTTCST------TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SS-H
T ss_pred ---CcHHHHHHHhcC------CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hH-H
Confidence 378888887753 78888887 999999988 999999999999999999999999987544433 21 2
Q ss_pred hhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhh
Q 037587 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFT 323 (464)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~ 323 (464)
. .... ...+++ ||||.++ +|+|+||++++ +.+.+.+.... ..++.+++.+.++.++++..+.
T Consensus 238 ~-~~~~---------~~~d~~---t~sK~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~- 301 (406)
T 4adb_A 238 Y-MHYG---------VTPDLL---TTAKALG-GGFPVGALLAT-EECARVMTVGTHGTTYGGNPLASAVAGKVLELINT- 301 (406)
T ss_dssp H-HHHT---------CCCSEE---EECGGGG-TTSCCEEEEEC-HHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS-
T ss_pred H-HhcC---------CCCCEE---Eechhhc-CCCCeEEEEEc-HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-
Confidence 1 1111 123344 7899999 99999999984 44544443322 2345778888888877753221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC
Q 037587 324 CNYMKENRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH 399 (464)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~ 399 (464)
++.++.++++++++.+.|++.+ ........|+++|+.++.... ....+++..++ ++||.+.|+.
T Consensus 302 ----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~v~~~~--- 369 (406)
T 4adb_A 302 ----PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA----GQAKQISQEAA-KAGVMVLIAG--- 369 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT----TCHHHHHHHHH-HTTEECEESS---
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH----HHHHHHHHHHH-HCCcEEeecC---
Confidence 3444555666666666666542 111122335688998875321 11235677765 5699999864
Q ss_pred CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 400 CNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 400 ~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++++|++++. .+++++++++++|++++++.+
T Consensus 370 ---~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 370 ---GNVVRFAPALNVSEEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789997655 689999999999999998754
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=259.54 Aligned_cols=337 Identities=12% Similarity=0.076 Sum_probs=210.6
Q ss_pred CCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCC----CCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 34 NPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQD----YHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 34 ~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
++.+.|.|+.+.+..+++.+.+++.+..... .. .....|.. .....+++++++++++ +++
T Consensus 17 ~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~ 80 (400)
T 3vax_A 17 RGSHMTYLDAAATTRVDQRVADIVLHWMTAE-FG-------NAGSRHEYGIRAKRGVERAREYLASTVS--------AEP 80 (400)
T ss_dssp -----CCCCCCCCSSSCHHHHHHHHHHHHHH-HS-------CSSCHHHHHHHHHHHHHHHHHHHHHHTT--------CCG
T ss_pred ccCCcEEecCCCCCCCCHHHHHHHHHHHHhc-cC-------CCcccchhHHHHHHHHHHHHHHHHHHcC--------CCC
Confidence 4556777887777666666666666542210 00 00001111 1123456666666654 678
Q ss_pred CcEEEeCChHHHHHHHHHHhc----CCCC-eEEEcCCCCCChhhhccc--CCCcEEEEEecCCCCCcccCHHHHHHHHHH
Q 037587 110 NKLVLTAGSTAANETLMFCLA----DPGD-AFLLPTPYYPGFDRDLKW--RPGVEIVPIHCSSSNGFRITISALENAYQQ 182 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~----~~gd-~Vlv~~p~y~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 182 (464)
++|++|+|+++++..++.+++ ++|| .|+++.++|+.+...+.. ..|++++.+++++ ++.+|+++|++++.+
T Consensus 81 ~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~ 158 (400)
T 3vax_A 81 DELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRP 158 (400)
T ss_dssp GGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCT
T ss_pred CcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCC
Confidence 899999999999999999998 8999 999999999876554332 2399999999864 567899999988754
Q ss_pred HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCC
Q 037587 183 AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (464)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+. ... . .+ + . ..
T Consensus 159 ------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~---~~~--~-~~---~-~---------~~ 210 (400)
T 3vax_A 159 ------DTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGY---GKV--P-GD---L-T---------TP 210 (400)
T ss_dssp ------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTT---TTS--G-GG---G-G---------SC
T ss_pred ------CceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhc---CCC--C-cC---h-h---------hc
Confidence 7899999999999999987 57788899999999999999973 211 1 11 1 1 11
Q ss_pred CcEEEEcCCCcCCCCCccEEEEEE-ecCHHHH---HHHHH---------hcccCCCChHHHHHHHHHcCCchhhHHHHHH
Q 037587 263 SRIHIVYSLSKDFSMPGFRVGMIY-SNNERVV---SAATK---------MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKE 329 (464)
Q Consensus 263 ~~vi~l~S~SK~~g~~GlRiG~l~-~~~~~~~---~~~~~---------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 329 (464)
..+++.|+||.+|.+| +|+++ ++++.+. ..+.. ....++.+...+.++..+++. ..+++++
T Consensus 211 -~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~ 284 (400)
T 3vax_A 211 -IDMISISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQ 284 (400)
T ss_dssp -CSEEEEETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHH
T ss_pred -CcEEEEeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHH
Confidence 4478899999888666 56666 5441111 00110 111234556666666565542 2345677
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeecCCc---cEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC-----
Q 037587 330 NRKRLRKRKEMLVSGLKVAGIRCLKSNA---GLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN----- 401 (464)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~----- 401 (464)
.++.++++++++.+.|+..|+.+..+.+ +.++++.++.. ...++...|. +||.+++|..|...
T Consensus 285 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~--~gi~v~~g~~~~~~~~~~~ 355 (400)
T 3vax_A 285 WQVAAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDV-------DAEAFLVTLK--DLVAVATGSASTSASFTPS 355 (400)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHH--HHHHHTTTTEEEEEEECCH
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHHh--cCcEEEecccccCCCCCcc
Confidence 8888889999999999844888876654 34666776631 1224666664 79999998755431
Q ss_pred --------C----CCeEEEEe-ec-CCHHHHHHHHHHHHHHHHh
Q 037587 402 --------E----PGWFRICF-AN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 402 --------~----~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
. .+++||++ +. .+++++++++++|++++++
T Consensus 356 ~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 356 HVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred HHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 0 48999999 75 6789999999999998764
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-29 Score=252.62 Aligned_cols=360 Identities=10% Similarity=0.039 Sum_probs=225.1
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||+.+ .+++. +|.+.+++.+... .... ....+..+++.++++++.+.++
T Consensus 42 ~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~-------------~~~~-~~~~~~~~~~~~la~~l~~~~~-- 105 (452)
T 3n5m_A 42 WVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQ-------------TLSY-FPMSQSHEPAIKLAEKLNEWLG-- 105 (452)
T ss_dssp EEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHT-------------TCCC-CCTTSEEHHHHHHHHHHHHHHT--
T ss_pred EEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-------------hcCC-cccccCCHHHHHHHHHHHHhCC--
Confidence 4444456678999987 45553 4667776665421 1111 2223456677777777766544
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc-----C---CCCeEEEcCCCCCChhhhcccCCCc------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA-----D---PGDAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~-----~---~gd~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~ 164 (464)
...+ |++|+|+++++..+++++. . +++.|++.+|+|+++........|. .+..++..
T Consensus 106 --~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (452)
T 3n5m_A 106 --GEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPP 182 (452)
T ss_dssp --SCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCC
T ss_pred --CCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCC
Confidence 3445 9999999999999999887 5 7899999999998875433222121 23333321
Q ss_pred CCCCccc-C---------HHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 165 SSNGFRI-T---------ISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 165 ~~~~~~~-d---------~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
..-.+.. | +++|++.+++. ...++++|++..+ +| ||.++ +.+.+++|.++|++||+++|+||+|.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 259 (452)
T 3n5m_A 183 DCYRMPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVIC 259 (452)
T ss_dssp CTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred ccccCccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchh
Confidence 1001111 1 78898888621 1236777777666 79 99766 78889999999999999999999999
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH--------hcccC
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK--------MSSFG 303 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~--------~~~~~ 303 (464)
++...+. .+ . ..... .... +.||||+++ .| +|+||++++ +.+.+.+.. ....+
T Consensus 260 g~g~~g~--~~-~-~~~~~---------~~~d---i~t~sK~l~-~G~~~ig~~~~~-~~i~~~~~~~~~~~~~~~~~t~ 321 (452)
T 3n5m_A 260 GFGRTGK--AF-G-FMNYD---------VKPD---IITMAKGIT-SAYLPLSATAVK-REIYEAFKGKGEYEFFRHINTF 321 (452)
T ss_dssp TTTTTSS--SS-G-GGGTT---------CCCS---EEEECGGGG-TTSSCCEEEEEE-HHHHGGGCSSSTTCSCCCCCSS
T ss_pred CCCcccc--cc-h-hhhcC---------CCCC---EEeeccccc-CCCcceEEEEEC-HHHHHHHhhccCCCCccccCCC
Confidence 8543332 11 1 11111 1122 347999998 59 999999994 455554422 11223
Q ss_pred CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCcccccCC---hhHHHH
Q 037587 304 LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSNT---FEAEKE 379 (464)
Q Consensus 304 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~~~~---~~~~~~ 379 (464)
..+++++.++.++++..+- ++..++.++..+..++.+.+.+.+++ +...++.+ .|+++++........ .....+
T Consensus 322 ~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~ 399 (452)
T 3n5m_A 322 GGNPAACALALKNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKG-LLVGIELVNDKETKEPIDNDKIAS 399 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESS-SCEEEEEEEETTTTEECCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE-EEEEEEEecCCcccCCCCHHHHHH
Confidence 4678888888887763211 12233333333333334444444443 34445555 477777743211110 011234
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
++..++ ++||.++|+..|.....+++||+++. .+++++++++++|++++++
T Consensus 400 ~~~~l~-~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 400 VVNACK-EKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp HHHHHH-HTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 666665 67999999987766567899998765 6999999999999998864
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=254.56 Aligned_cols=326 Identities=14% Similarity=0.098 Sum_probs=216.4
Q ss_pred CCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccc-cccCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 33 HNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRE-LALFQDYHGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 33 ~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
.+...+|||+.+. |++ +++.+.+++.+.... ... ...|+ .....++++.+++++ + +
T Consensus 42 ~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~----------~~~~~~~~~-~~~~~~l~~~la~~~----~----~ 102 (395)
T 1vef_A 42 AEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAET----------LMAMPQTLP-TPMRGEFYRTLTAIL----P----P 102 (395)
T ss_dssp TTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHH----------CCCCCTTSC-CHHHHHHHHHHHHTS----C----T
T ss_pred CCCCEEEEccCccccccCCCCCHHHHHHHHHHHHh----------CCCCccccC-CHHHHHHHHHHHHhc----C----C
Confidence 3445688998875 444 446666666654211 000 11231 122345555555543 2 4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhh-hcccCCCcE------------EEEEecCCCCCcccC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDR-DLKWRPGVE------------IVPIHCSSSNGFRIT 172 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~-~~~~~~g~~------------~~~v~~~~~~~~~~d 172 (464)
.+++|++|+|+++++..++.++. .+||.|++.+|+|++... .+... |.+ +..++. .|
T Consensus 103 ~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~-g~~~~~~~~~p~~~~~~~~~~-------~d 174 (395)
T 1vef_A 103 ELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVT-WEPKYREPFLPLVEPVEFIPY-------ND 174 (395)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTC-CCHHHHGGGCSCSSCEEEECT-------TC
T ss_pred CcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhc-CCcccccccCCCCCCeeEeCC-------Cc
Confidence 67899999999999999998764 578999999999976443 44433 654 223321 47
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhh
Q 037587 173 ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVM 251 (464)
Q Consensus 173 ~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~ 251 (464)
+++|++.+++ ++++|+++.++||||.++ +.+++++|.++|+++|+++|+||+|.++.+.+. .+ + .....
T Consensus 175 ~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~--~~-~-~~~~~ 244 (395)
T 1vef_A 175 VEALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--RF-A-FEHFG 244 (395)
T ss_dssp HHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SS-T-HHHHT
T ss_pred HHHHHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc--hh-H-hhhcC
Confidence 8999888753 778776655578999865 688899999999999999999999996433222 11 1 11111
Q ss_pred ccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHHcCCchhhHHHHHH
Q 037587 252 DRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKE 329 (464)
Q Consensus 252 ~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 329 (464)
....++ ||||.++ +|+|+||++++++ +.+.+.. ....+..+++.+.++.++++... + ..
T Consensus 245 ---------~~~d~~---s~sK~~~-~g~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~---~--~~ 305 (395)
T 1vef_A 245 ---------IVPDIL---TLAKALG-GGVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE---R--TR 305 (395)
T ss_dssp ---------CCCSEE---EECGGGG-TTSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--HT
T ss_pred ---------CCCCEE---EEccccc-CCCceEEEEehHH-HHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH---h--CC
Confidence 112233 8899999 5999999999654 4443332 12223467788887777765321 1 23
Q ss_pred HHHHHHHHHHHHHHHHHhCCCee---ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 037587 330 NRKRLRKRKEMLVSGLKVAGIRC---LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWF 406 (464)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~~g~~~---~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 406 (464)
..+.++++++++.+.|++++.++ .++ .|+|+|++++.. ..+++..+++++||.++|+ +++++
T Consensus 306 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~g~~~~~~~~~~--------~~~l~~~l~~~~gi~v~~~------~~~~i 370 (395)
T 1vef_A 306 LWERAAELGPWFMEKLRAIPSPKIREVRG-MGLMVGLELKEK--------AAPYIARLEKEHRVLALQA------GPTVI 370 (395)
T ss_dssp THHHHHHHHHHHHHHHHTSCCTTEEEEEE-ETTEEEEEESSC--------SHHHHHHHHHHHCEECEES------STTEE
T ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEEEE-EEEEEEEEEcCh--------HHHHHHHHHHHCCeEEecC------CCCEE
Confidence 45667778888888888775422 233 446889988741 1246777763679999986 25789
Q ss_pred EEEeec-CCHHHHHHHHHHHHHHH
Q 037587 407 RICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 407 Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
||+++. .+++++++++++|++++
T Consensus 371 Ri~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 371 RFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999874 68999999999999875
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-29 Score=245.50 Aligned_cols=297 Identities=14% Similarity=0.109 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh--hhcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDP--NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD--RDLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~--~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~~g~~~~~v~ 162 (464)
.++.+.+.+++.+.++ +++ +.+++|+|+++++..++.+++++||+|+++.|+|.+.. ..+... |++++.++
T Consensus 51 ~~~~~~~~~~la~~~g----~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v~ 125 (376)
T 3f0h_A 51 SSTMLENEKFMLEYAK----APEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIH-EIPYVALK 125 (376)
T ss_dssp HHHHHHHHHHHHHHHT----CCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHc-CCceEEEe
Confidence 3555555555555544 333 34556999999999999999999999999998765543 234445 89999998
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.+. ++.+|++++++.+. +++++|++++|+||||.++| +++|.++|+++|+++|+|++|... .. .
T Consensus 126 ~~~--~~~~d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~---~~--~ 189 (376)
T 3f0h_A 126 LEH--GKKLTKEKLYEYDN------QNFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFL---AD--P 189 (376)
T ss_dssp CCT--TCCCCHHHHHTTTT------SCCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTT---TS--C
T ss_pred CCC--CCCCCHHHHHHhhc------cCceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCcccc---Cc--c
Confidence 763 57789999988653 37899999999999999998 888899999999999999999742 22 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhc-------------------cc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMS-------------------SF 302 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~-------------------~~ 302 (464)
..+... +..+++.|+||+++ .+| +|++++++ .+.+.+.... ..
T Consensus 190 -~~~~~~-------------~~d~~~~s~~K~l~~~~G--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (376)
T 3f0h_A 190 -FNMNEC-------------GADVMITGSQKVLACPPG--ISVIVLAP-RGVERVEKSKVRTMYFDLKDALKNQERGQTP 252 (376)
T ss_dssp -CCHHHH-------------TCSEEEEETTTTTCCCSS--CEEEEECH-HHHHHHHTCCCCCSTTCHHHHHHHHTTTCCS
T ss_pred -cccccc-------------CccEEEecCcccccCCCc--eEEEEECH-HHHHHhhcCCCCceeecHHHHHhhcccCCCC
Confidence 121111 34578899999998 566 57788744 4444443211 12
Q ss_pred CCCChHHHHHHHHHcCCchhhHH-HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHH
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCN-YMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELW 381 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~ 381 (464)
++.+...+.++.+++.... +. .+++.++.++++++++.+.|+++|+.+.++....+++.-.+... ...++.
T Consensus 253 ~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ 324 (376)
T 3f0h_A 253 FTPAVGILLQINERLKEIK--KHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTTA------NAYDIF 324 (376)
T ss_dssp SCCCHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSS------CHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCCC------CHHHHH
Confidence 2233333344444433111 11 36677788888889999999988877765433222222112211 123577
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 382 KKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 382 ~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
..+++++||.++||.. ....+++||+++. .+++++++++++|++++++
T Consensus 325 ~~l~~~~gi~v~~g~~--~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 325 LKLKDEYGIWICPNGG--EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHSSEECEECCG--GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCEEEecCcc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 7776555999999842 2346789999975 6899999999999999875
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=255.39 Aligned_cols=333 Identities=13% Similarity=0.099 Sum_probs=216.0
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCC---------CcHHHHHHHHHHHHHHcCCCCC
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYH---------GFPDAKKELVKLMARIRGNKVK 106 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---------g~~~lr~~ia~~~~~~~~~~~~ 106 (464)
.+.+.|+.+++..+++.+.+++.+.. .....|+... ...++|++++++++
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-------- 75 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAM-------------KEAWGNPSSSYVAGRKAKDIINTARASLAKMIG-------- 75 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHH-------------HHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHH-------------HHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 46789998888766677777766542 1122343321 12588899998885
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCCCChh-----------------hhcccCCCcEEEEE
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLA--------DPGDAFLLPTPYYPGFD-----------------RDLKWRPGVEIVPI 161 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~-----------------~~~~~~~g~~~~~v 161 (464)
+++++|++|+|+++++..++.+++ ++||+|+++.|+|..+. ..+... |++++.+
T Consensus 76 ~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~-g~~v~~v 154 (432)
T 3a9z_A 76 GKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQ-VAEVTFV 154 (432)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTT-SCEEEEE
T ss_pred CCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhc-CcEEEEE
Confidence 577899999999999999999986 58999999999998762 222334 8999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC----------eEEEEeccc
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR----------IHIVSDEIY 231 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~----------~~lI~Deay 231 (464)
+++++ ++.+|+++|++.+.+ ++++|++++|+||||.+++.+ +|.++|++++ +++|+||+|
T Consensus 155 ~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~---~i~~l~~~~~~~~~~~~~~~~~livDea~ 224 (432)
T 3a9z_A 155 PVSKV-NGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMPIS---EISRRIKALNQIRAASGLPRVLVHTDAAQ 224 (432)
T ss_dssp CCCTT-TSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCCHH---HHHHHHHHHHHHHHHHTCCCCEEEEECTT
T ss_pred ecCcc-cCCcCHHHHHHhccC------CceEEEEECcccCcccccCHH---HHHHHHHhcCcccccccCCceEEEEEchh
Confidence 98642 457899999988753 789999999999999999854 5777788888 999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH---------Hhccc
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT---------KMSSF 302 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~---------~~~~~ 302 (464)
+.. .. ..++..+ +..+++.|+||.+| .|+||++++++.....+. .....
T Consensus 225 ~~~---~~---~~~~~~~-------------~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (432)
T 3a9z_A 225 ALG---KR---RVDVEDL-------------GVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRP 282 (432)
T ss_dssp TTT---TS---CCCHHHH-------------CCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSC
T ss_pred hhC---Cc---ccChhhc-------------CCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccC
Confidence 742 12 1232222 12255889999875 469999996543111111 11122
Q ss_pred CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--cC-----CccEEEEEecCcccccCCh
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL--KS-----NAGLFCWVDMRHLLVSNTF 374 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~--~~-----~~g~f~~~~l~~~~~~~~~ 374 (464)
++.+...+.++.++++. +.+++++.++.++++++++.+.|+++ |+.+. .+ ..+..+++.++... ..
T Consensus 283 ~~~~~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 356 (432)
T 3a9z_A 283 GTENTPMIAGLGKAADL---VSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ--LR- 356 (432)
T ss_dssp SCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT--CC-
T ss_pred CCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC--Cc-
Confidence 44667777777666653 13456778888889999999999885 65443 22 12335555555311 01
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCCC------------------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHCN------------------EPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~~------------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..++...+ .||.+.+|..|... ..+++||+++. .+++++++++++|++++++.+
T Consensus 357 --~~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 357 --GYMVLAQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp --HHHHHHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHh---cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 11233332 37888877655321 13789999986 579999999999999987643
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=246.37 Aligned_cols=296 Identities=14% Similarity=0.133 Sum_probs=215.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEc-CCCCCChh-hhcccCCCcEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA---DPGDAFLLP-TPYYPGFD-RDLKWRPGVEIVP 160 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~-~p~y~~~~-~~~~~~~g~~~~~ 160 (464)
..+++++++++++.. .++++++|++|+|+++++..++.++. ++||+|+++ .|+|+.+. ..+... |++++.
T Consensus 40 ~~~~~~~l~~~~~~~----~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~-g~~~~~ 114 (385)
T 2bkw_A 40 FQRVLKNTRAVFKSA----AASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSY-GAQVDV 114 (385)
T ss_dssp HHHHHHHHHHHTTCC----GGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHhCCC----CCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHc-CCceEE
Confidence 456778888887642 23567899999999999999999998 899999887 55665543 445555 999999
Q ss_pred Eec-CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC--CeEEEEeccccccccC
Q 037587 161 IHC-SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK--RIHIVSDEIYSGTVFD 237 (464)
Q Consensus 161 v~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~--~~~lI~Deay~~~~~~ 237 (464)
++. + .++.+|+++|++.+++ .++++|++++|+||||.+++ +++|+++|+++ |+++|+||+|+ ++
T Consensus 115 v~~~~--~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~---~~ 181 (385)
T 2bkw_A 115 VRPLK--IGESVPLELITEKLSQ-----NSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCS---IG 181 (385)
T ss_dssp ECCSS--TTSCCCHHHHHHHHHH-----SCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTT---TT
T ss_pred EecCC--CCCCCCHHHHHHHHhc-----CCCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccc---cC
Confidence 998 5 3567899999999864 26789999999999999987 66788899999 99999999997 32
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHH--------------------
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAA-------------------- 296 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~-------------------- 296 (464)
.. . .++. ..+.++++.|+||.+ |++| +||++++++.+.+.+
T Consensus 182 ~~--~-~~~~-------------~~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 243 (385)
T 2bkw_A 182 CE--E-FEFD-------------EWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTP 243 (385)
T ss_dssp TS--C-CCTT-------------TTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHH
T ss_pred Cc--c-cccc-------------ccCceEEEecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhh
Confidence 22 1 1211 114567889999966 4567 499999655433021
Q ss_pred --HHhcc-----cCCCChHHHHHHHHHcCCchhhHHH-HHHHHHHHHHHHHHHHHHH-HhCCCeeecCC-----ccEEEE
Q 037587 297 --TKMSS-----FGLVSSQTQYLLSRMLSDKKFTCNY-MKENRKRLRKRKEMLVSGL-KVAGIRCLKSN-----AGLFCW 362 (464)
Q Consensus 297 --~~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~-----~g~f~~ 362 (464)
..... +++.+...+.++..+++.. .+. +++.++.++++++++.+.| +++|+++..+. .+.++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~ 320 (385)
T 2bkw_A 244 IMENYEAGKGAYFATPPVQLINSLDVALKEI---LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTA 320 (385)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEE
T ss_pred HHHhhhccCCCCCCCCCHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEE
Confidence 11111 2345666666666666431 222 5667788888999999999 88788877532 466889
Q ss_pred EecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE-ee----cCCHHHHHHHHHHHHHHHHh
Q 037587 363 VDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC-FA----NITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 363 ~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris-~~----~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++. ..++...|. ++||.+++|..+. ...+++||+ ++ ..+++++++++++|++++++
T Consensus 321 ~~~~~---------~~~~~~~l~-~~gi~v~~g~~~~-~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 321 VYVAD---------PPDVIAFLK-SHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp EECSC---------HHHHHHHHH-HTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EecCC---------HHHHHHHHH-HCCeEEeCCCCcc-cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 98863 224666664 6799999987653 245789999 76 25889999999999998754
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-29 Score=251.49 Aligned_cols=358 Identities=13% Similarity=0.055 Sum_probs=223.1
Q ss_pred CCCCCCCCceEEeecccc--cc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAEN--QL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||+.+.+ ++ .++.+.+++.+.. .....|....+..++++++++++.+.++
T Consensus 36 ~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~la~~~~-- 100 (439)
T 3dxv_A 36 RLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAA-------------ANPAGATILSASNAPAVTLAERLLASFP-- 100 (439)
T ss_dssp EEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHH-------------HSCSCSCSSSSEEHHHHHHHHHHHHTTT--
T ss_pred EEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHH-------------HhccCccccccCCHHHHHHHHHHHHhCC--
Confidence 333445567899998765 33 3466666665542 2233455455678888888888887653
Q ss_pred CCCCC-CcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChhhhcccCCCcEE--------------EEEecCCCC
Q 037587 105 VKFDP-NKLVLTAGSTAANETLMFCL--ADPGDAFLLPTPYYPGFDRDLKWRPGVEI--------------VPIHCSSSN 167 (464)
Q Consensus 105 ~~~~~-~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~--------------~~v~~~~~~ 167 (464)
... +++++|+|+++++..+++++ ..+++.|++.+|+|+++...+....|... ..++.+ .
T Consensus 101 --~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 176 (439)
T 3dxv_A 101 --GEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--P 176 (439)
T ss_dssp --CTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--C
T ss_pred --CCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--c
Confidence 344 69999999999999999885 33667899999999776554433323222 122221 1
Q ss_pred Cccc-----CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCC-HHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 168 GFRI-----TISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMT-HQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 168 ~~~~-----d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s-~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
.+.. |+++|++.+++ ....++++|+++.++|++|.+.+ .+.+++|.++|++||+++|+||+|.++...+.
T Consensus 177 ~~~~~~~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~-- 252 (439)
T 3dxv_A 177 YRNDPTGDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR-- 252 (439)
T ss_dssp BTTBTTSHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS--
T ss_pred ccccccHHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--
Confidence 1111 68888888841 11236777777767788888665 44599999999999999999999987433222
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSD 319 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~ 319 (464)
. ....... ....++ ||||++| +|+|+||++++ +.+.+.+... ...+ .+++++.++.++++.
T Consensus 253 ~--~~~~~~~---------~~~di~---s~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~ 315 (439)
T 3dxv_A 253 L--HCFEHEG---------FVPDIL---VLGKGLG-GGLPLSAVIAP-AEILDCASAFAMQTLH-GNPISAAAGLAVLET 315 (439)
T ss_dssp S--SGGGGTT---------CCCSEE---EECGGGG-TTSCCEEEEEE-HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHH
T ss_pred h--hHHHhcC---------CCCCEE---EEcchhc-CCcceEEEEEC-HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHH
Confidence 1 1111111 112332 9999999 79999999995 4454444322 2234 678888888777763
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
... .++.++.++..+..++.+.+.+..++ +...++.+ .|+|+++...... .......+++..++ ++||.+.|+.
T Consensus 316 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~ 392 (439)
T 3dxv_A 316 IDR-DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRG-LACGMELVCDRQSREPARAETAKLIYRAY-QLGLVVYYVG 392 (439)
T ss_dssp HHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET-TEEEEEEEEETTTTEECHHHHHHHHHHHH-HHTEECEEES
T ss_pred HHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEE-EEEEEEEecCccccCCCHHHHHHHHHHHH-HCCcEEeecC
Confidence 221 11223333333333333444333343 34445554 5788877321100 11123345677776 5599999985
Q ss_pred CCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 397 SCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 397 ~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+ .+++||+++. .+++++++++++|++++++..
T Consensus 393 ~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 393 MN----GNVLEFTPPLTITETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp TT----SCEEEECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred CC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 32 4789998765 589999999999999998764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=248.25 Aligned_cols=338 Identities=14% Similarity=0.085 Sum_probs=215.3
Q ss_pred CCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccc--cccCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 34 NPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRE--LALFQDYHGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 34 ~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
....++|++.+. +++ +++.+.+++.+.... ... ...|+.. ...++++.+++++ + +
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~----------~~~~~~~~~~~~-~~~~l~~~la~~~----~----~ 101 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA----------MSHVMFGGITHA-PAIELCRKLVAMT----P----Q 101 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHH----------CSCCCCSSEECH-HHHHHHHHHHHHS----C----T
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHh----------cccccccccCCH-HHHHHHHHHHHhC----C----C
Confidence 445678998776 444 346666666654211 000 1133221 1245555555554 2 5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc---C----CCCeEEEcCCCCCChhhhcccC---------------CCcEEEEEecCC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLA---D----PGDAFLLPTPYYPGFDRDLKWR---------------PGVEIVPIHCSS 165 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~---~----~gd~Vlv~~p~y~~~~~~~~~~---------------~g~~~~~v~~~~ 165 (464)
++++|++|+|+++++..+++++. + |||.|++.+|+|+++....... .++..++++...
T Consensus 102 ~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
T 1s0a_A 102 PLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSR 181 (429)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSB
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCccc
Confidence 78899999999999999998653 2 6899999999998764322111 123444443210
Q ss_pred -CCCc-ccCHHHHHHHHHHHhhcCCceEEEEEeCC--CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 166 -SNGF-RITISALENAYQQAQTLNLKVKGVLITNP--SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 166 -~~~~-~~d~~~l~~~i~~~~~~~~~~~~vil~~P--~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.| .+|++.|++.+++. ..++++ ++++| +||||. ..+.+++++|.++|+++|+++|+||+|.++.+.+.
T Consensus 182 ~~~~~~~~d~~~l~~~l~~~---~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~- 256 (429)
T 1s0a_A 182 MDGEWDERDMVGFARLMAAH---RHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK- 256 (429)
T ss_dssp C-CCCCGGGGHHHHHHHHHH---TTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-
T ss_pred ccccchHHHHHHHHHHHHhC---CCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch-
Confidence 1234 47899999988742 125554 55667 589996 55788899999999999999999999987433222
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh-------cccCCCChHHHHH
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM-------SSFGLVSSQTQYL 312 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~-------~~~~~~s~~~q~~ 312 (464)
. .. ..... ...++ .||||.++ +| +|+||+++++ .+.+.+... ...++.+++++.+
T Consensus 257 -~-~~-~~~~~---------~~~d~---~t~sK~l~-~G~~~iG~~~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~~a 319 (429)
T 1s0a_A 257 -L-FA-CEHAE---------IAPDI---LCLGKALT-GGTMTLSATLTTR-EVAETISNGEAGCFMHGPTFMGNPLACAA 319 (429)
T ss_dssp -S-SG-GGGGT---------CCCSE---EEECGGGG-TSSSCCEEEEECH-HHHHHHHTSTTSSCSCCCTTTTCHHHHHH
T ss_pred -H-HH-hhhcC---------CCCCE---EEeccccc-CCCccceEEEeCH-HHHHHhhcCCCcccccCCCCCCCHHHHHH
Confidence 1 11 11111 11233 38999998 79 9999999954 455555442 1233467888888
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhc
Q 037587 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEV 388 (464)
Q Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~ 388 (464)
+.++++...- +...+.++++++++.+.|+++ ++...++.+ .|+|++++.... ..++...|+ ++
T Consensus 320 ~~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~~~~~~~~~------~~~l~~~l~-~~ 386 (429)
T 1s0a_A 320 ANASLAILES-----GDWQQQVADIEVQLREQLAPARDAEMVADVRVLG-AIGVVETTHPVN------MAALQKFFV-EQ 386 (429)
T ss_dssp HHHHHHHHHT-----CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEET-TEEEEEESSCBC------HHHHHHHHH-HT
T ss_pred HHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEee-EEEEEEECCccc------HHHHHHHHH-HC
Confidence 8777753110 122344455666777777664 344344555 488998874211 224666666 67
Q ss_pred CeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 389 GLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 389 gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
||.++|+ .+++||+++. .+++++++++++|++++++.
T Consensus 387 Gi~v~~~-------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 387 GVWIRPF-------GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp TEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred CCEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999874 2689999764 68999999999999987543
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=245.42 Aligned_cols=338 Identities=12% Similarity=0.065 Sum_probs=220.8
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||+.+ .|++. ++.+.+++.+..+ ... |....+..++++++++++.+..+
T Consensus 29 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-------------~~~-~~~~~~~~~~~~~l~~~la~~~~-- 92 (395)
T 3nx3_A 29 YLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD-------------KLL-HTSNLYYNENIAAAAKNLAKASA-- 92 (395)
T ss_dssp EEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHT-------------TCS-CCCTTSBCHHHHHHHHHHHHHHT--
T ss_pred EEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHH-------------hcc-ccccccCCHHHHHHHHHHHHhcC--
Confidence 3333455678999988 66653 4667766665421 111 11122335666666666665543
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc-------CCCCeEEEcCCCCCChhhhcccCC------------CcEEEEEecCC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA-------DPGDAFLLPTPYYPGFDRDLKWRP------------GVEIVPIHCSS 165 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~~------------g~~~~~v~~~~ 165 (464)
+++|++|+|+++++..++.++. .+++.|++.+|+|+++...+.... +.++..++.+
T Consensus 93 ----~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (395)
T 3nx3_A 93 ----LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN- 167 (395)
T ss_dssp ----CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-
T ss_pred ----CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-
Confidence 5799999999999999998775 457999999999987653332221 2344555432
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
|+++|++.+++ ++++|++..++|++|.. .+.+++++|.++|+++|+++|+||+|.++...+. . .
T Consensus 168 ------d~~~l~~~l~~------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~-~ 232 (395)
T 3nx3_A 168 ------DISSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK--F-F 232 (395)
T ss_dssp ------CHHHHHTTCCT------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S-S
T ss_pred ------CHHHHHHhccC------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc--c-h
Confidence 68888887753 77877777667777776 6788899999999999999999999987533222 1 1
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCCchh
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSDKKF 322 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~ 322 (464)
.. ... +....+.||||.+| +|+|+||++++++.+.+.+... ...+..+++++.++.++++....
T Consensus 233 ~~-~~~------------~~~~d~~t~sK~~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~ 298 (395)
T 3nx3_A 233 AY-EHA------------QILPDIMTSAKALG-CGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE 298 (395)
T ss_dssp GG-GGG------------TCCCSEEEECGGGT-TTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH
T ss_pred hH-Hhc------------CCCCCEEEeccccc-CCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 11 111 11122448999998 6999999999554315544332 22345788888888887763211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 037587 323 TCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN 401 (464)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~ 401 (464)
+++.++.++..+..++.+.+.+.++. +...++.+ .|+|+.++... ...+++..++ ++||.++|+.
T Consensus 299 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~------~~~~~~~~l~-~~Gi~v~~~~----- 364 (395)
T 3nx3_A 299 -EKILENVNKLTPYLEQSLDELINEFDFCKKRKGLG-FMQGLSLDKSV------KVAKVIQKCQ-ENALLLISCG----- 364 (395)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET-TEEEEEECTTS------CHHHHHHHHH-HTTEECEEET-----
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEE-EEEEEEeCCcc------hHHHHHHHHH-HCCCEEecCC-----
Confidence 22233334433444444555444443 33444444 58889887521 1234666665 6799999873
Q ss_pred CCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 402 EPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 402 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
.+++||+++. .+++++++++++|++++++
T Consensus 365 -~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 365 -ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 5789999766 6899999999999998864
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=247.81 Aligned_cols=351 Identities=13% Similarity=0.110 Sum_probs=217.6
Q ss_pred CCCCceEEeecccc--cc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 33 HNPSGIIQMGLAEN--QL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 33 ~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
.....+||++.+.+ ++ +++.+.+++.+.... ...+. ..+..+++..+++.+.+.++ ++
T Consensus 40 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-------------~~~~~-~~~~~~~~~~l~~~la~~~~----~~ 101 (433)
T 1zod_A 40 ADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK-------------LDHLF-SEMLSRPVVDLATRLANITP----PG 101 (433)
T ss_dssp TTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH-------------CCCCC-TTCCCHHHHHHHHHHHHHSC----TT
T ss_pred CCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh-------------Ccccc-cccCCHHHHHHHHHHHHhCC----CC
Confidence 34456789877654 33 246666666554211 11111 12224555666666655544 56
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhccc-------------CCCcEEEEEecCCCCCcc---
Q 037587 109 PNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKW-------------RPGVEIVPIHCSSSNGFR--- 170 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-------------~~g~~~~~v~~~~~~~~~--- 170 (464)
+++|++|+|+++++..+++++. ..++.|++.+|+|+++...+.. ..|++.++++......|.
T Consensus 102 ~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (433)
T 1zod_A 102 LDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNG 181 (433)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETT
T ss_pred cCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCch
Confidence 7899999999999999998653 2358999999999875432110 114555444422111222
Q ss_pred -----cCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 171 -----ITISALENAYQQAQTLNLKVKGVLITNP-SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 171 -----~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
+|++.|++.+++. ...+++ +++++| +||||. ..+.+++++|.++|+++|+++|+||+|.++.+.+. .
T Consensus 182 ~~~~~~d~~~le~~l~~~--~~~~~~-~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~--~- 255 (433)
T 1zod_A 182 AYDYLAELDYAFDLIDRQ--SSGNLA-AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT--M- 255 (433)
T ss_dssp EECHHHHHHHHHHHHHHH--CCSCEE-EEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S-
T ss_pred hhhHHHHHHHHHHHHHhc--CCCCeE-EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch--H-
Confidence 3688999888642 112555 455677 588996 56888999999999999999999999997533222 1
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--c--ccCCCChHHHHHHHHHcCC
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--S--SFGLVSSQTQYLLSRMLSD 319 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~--~~~~~s~~~q~~~~~~l~~ 319 (464)
.. .+... .... +.||||.|| +|+|+||+++++ .+.+.+... . ..+..+++++.++.++++.
T Consensus 256 ~~-~~~~~---------~~~d---i~s~sK~~~-~G~~ig~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~ 320 (433)
T 1zod_A 256 FA-CQRDG---------VTPD---ILTLSKTLG-AGLPLAAIVTSA-AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDV 320 (433)
T ss_dssp ST-HHHHT---------CCCS---EEEECHHHH-TTSSCEEEEECH-HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHH
T ss_pred hH-HhhcC---------CCCC---EEEeccccc-CCCCeeEEEEhH-HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 11 11211 1122 348999999 599999999954 555555442 1 2234678888887777653
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh----CC-CeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEE
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKV----AG-IRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v 392 (464)
..- +...+.++++++++.+.|++ ++ +...++.+ .|+|++++..... .......+++..++ ++||.+
T Consensus 321 ~~~-----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v 393 (433)
T 1zod_A 321 VQR-----DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRG-LLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSM 393 (433)
T ss_dssp HHH-----TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET-TEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEEC
T ss_pred HHh-----CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEE-EEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeE
Confidence 110 11223333344444444443 22 33344555 5788888642110 00122345777776 679999
Q ss_pred eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 393 SPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 393 ~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
.||..|+ .++++||+++. .+++++++++++|++++++
T Consensus 394 ~~~~~~~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 394 NIVQLPG--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp CEECCTT--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCCC--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 9998764 35799998764 6899999999999998865
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=251.07 Aligned_cols=363 Identities=11% Similarity=0.047 Sum_probs=223.8
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||+.+ .|++. ++.+.+++.+.. .....|....+..+++.++++++.+..+
T Consensus 57 ~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~-- 121 (453)
T 4ffc_A 57 VIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQA-------------THFTHTCFMVTPYEQYVQVAELLNALTP-- 121 (453)
T ss_dssp EEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHH-------------HHCSCCTTTTSCCHHHHHHHHHHHHHSS--
T ss_pred EEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHH-------------HhccccccCcCCCHHHHHHHHHHHHhCC--
Confidence 3334456678999987 55653 566666666542 2233455444567788888888876643
Q ss_pred CCC-CCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCC-------------CcEEEEEecC--CC
Q 037587 105 VKF-DPNKLVLTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRP-------------GVEIVPIHCS--SS 166 (464)
Q Consensus 105 ~~~-~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~-------------g~~~~~v~~~--~~ 166 (464)
. ..++|++|+|+++++..+++.+.. .++.|++.+|+|+++...+.... ...+..++.. ..
T Consensus 122 --~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (453)
T 4ffc_A 122 --GDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLR 199 (453)
T ss_dssp --CSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTT
T ss_pred --CCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCcccc
Confidence 2 257999999999999999977642 45899999999987654322110 1134444432 11
Q ss_pred CCcccC-HHHHHHHHHHHhhc-CCceEEEEEeCCCCCCC--CCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 167 NGFRIT-ISALENAYQQAQTL-NLKVKGVLITNPSNPLG--TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 167 ~~~~~d-~~~l~~~i~~~~~~-~~~~~~vil~~P~NPtG--~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
+.+..+ .+.++..++...+. +++..++++++|+||+| ...+.+.+++|.++|++||+++|+||+|.++...+. .
T Consensus 200 ~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~ 277 (453)
T 4ffc_A 200 DEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA--W 277 (453)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S
T ss_pred CccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc--c
Confidence 222333 23333222222111 22445678888988877 445778899999999999999999999987533322 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCCc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~ 320 (464)
... ... +.+..+.||||+++ .|+|+||++++ +.+.+.+... ...+..++++|.++.++|+..
T Consensus 278 -~a~-~~~------------~~~pdi~t~sK~~~-~G~~~G~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 341 (453)
T 4ffc_A 278 -FAS-EHE------------GIVPDIVTMAKGIA-GGMPLSAVTGR-AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVM 341 (453)
T ss_dssp -STH-HHH------------TCCCSEEEECGGGG-TTSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHH
T ss_pred -chh-hhc------------CCCcchHhhhhhhc-CCcCeEEEEEC-HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHh
Confidence 111 111 11222448999998 59999999984 4454444322 223457888998888877632
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCccc-ccCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLL-VSNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~-~~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
+- +++.++.++..+..++.+.+.+.++. +...++. |+|+|+++.... .........+++..++ ++||.++|+..|
T Consensus 342 ~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~ 418 (453)
T 4ffc_A 342 RE-LDLPARARAIEASVTSRLSALAEEVDIIGEVRGR-GAMLAIEIVKPGTLEPDAALTKSIAAEAL-SQGVLILTCGTF 418 (453)
T ss_dssp HH-TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTEECCEECTT
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee-ceEEEEEEecCcccCCCHHHHHHHHHHHH-hCCCEEecCCCC
Confidence 11 12233333333333444444444443 3334444 458888874310 0111123345666665 679999998654
Q ss_pred CCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 399 HCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 399 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+++||+++. .+++++++++++|++++++..
T Consensus 419 ----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 419 ----GNVIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp ----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3589999876 689999999999999998754
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=246.59 Aligned_cols=362 Identities=11% Similarity=0.030 Sum_probs=225.6
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA 116 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~ 116 (464)
+.|+|..++|+.++ .+.+++.+.... ...........|.......++++.+.+.+.+.++ +++++|++++
T Consensus 26 ~~i~l~~~~~~~~~-~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~~~~~i~~~s 95 (417)
T 3n0l_A 26 EGLEMIASENFTLP-EVMEVMGSILTN-----KYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN----CKFANVQPNS 95 (417)
T ss_dssp HSEECCTTCCCCCH-HHHHHHTBGGGG-----CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEEECCCSS
T ss_pred cCeeeecccCCCCH-HHHHHHhhhhhc-----cccccCCCccccccchHHHHHHHHHHHHHHHHhC----CCCcceEecc
Confidence 45889888888754 455555543110 0000000001122222234555544445554444 5677898888
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh---hcccC-CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 117 GSTAANETLMFCLADPGDAFLLPTPYYPGFDR---DLKWR-PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 117 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
| ++++..++.+++++||+|+++.|+|..+.. ..... .+..+++++.+ .++.+|+++|++.+.+. ++++
T Consensus 96 G-t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~ 167 (417)
T 3n0l_A 96 G-SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE-----KPKL 167 (417)
T ss_dssp H-HHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH-----CCSE
T ss_pred H-HHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc-----CCeE
Confidence 8 799999999999999999999999977544 22222 14456666655 56789999999999742 7888
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc-ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS-GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
|++++|+| |..++ +++|.++|+++|+++|+||+|. +..+.+. .... .....+++.|+
T Consensus 168 v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~---------------~~~~di~~~s~ 225 (417)
T 3n0l_A 168 IVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGE--HPSP---------------FPYAHVVSSTT 225 (417)
T ss_dssp EEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCC---------------TTTCSEEEEES
T ss_pred EEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhccc--CCCc---------------cccceEEEeeC
Confidence 88888876 77777 7788999999999999999964 3223322 1111 01234788999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhcccC---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSSFG---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
||.+ +|+|+||++++++.+.+.+......+ +.+...+.++..++.. ...+.+++.++.+.++++++.+.|.+.
T Consensus 226 sK~l--~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~ 301 (417)
T 3n0l_A 226 HKTL--RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKF--NLSDEWKVYAKQVRTNAQVLANVLMDR 301 (417)
T ss_dssp STTT--CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccc--CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9987 78889999997566666665543332 2233444444433332 112345677778888889999999988
Q ss_pred CCeeec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC----CCCCeEEEEeec-----CCHHHH
Q 037587 349 GIRCLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC----NEPGWFRICFAN-----ITEETL 418 (464)
Q Consensus 349 g~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~----~~~~~~Ris~~~-----~~~e~l 418 (464)
|+++.. +..+.++|++++.... .. +.+..++.++||.++++..+.. .....+|+++.. .+++++
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i 375 (417)
T 3n0l_A 302 KFKLVSDGTDNHLVLMSFLDREF-----SG-KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEM 375 (417)
T ss_dssp TCEEGGGSCSSSEEEEECTTSSS-----CH-HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred CceeccCCCCceEEEEEcccCCC-----CH-HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHH
Confidence 888765 2334588888863210 11 2344556788999987654322 123569999853 357999
Q ss_pred HHHHHHHHHHHHhhCccccccccceeeeee
Q 037587 419 QVALQRIKVFAQSCNPQMLLLQRRSIIGKW 448 (464)
Q Consensus 419 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 448 (464)
++++++|++++++........+...+..+|
T Consensus 376 ~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~ 405 (417)
T 3n0l_A 376 EIVSNYIADILDDVNNEKLQENIKQELKKL 405 (417)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 999999999998776433333333333333
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=246.15 Aligned_cols=360 Identities=8% Similarity=-0.035 Sum_probs=229.6
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||+.+ .+++. ++.+.+++.+.... ....|....+..++++++++.+.+..+
T Consensus 44 ~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~------------~~~~~~~~~~~~~~~~~la~~l~~~~~-- 109 (460)
T 3gju_A 44 TVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKN------------LAYYHAYVGHGTEASITLAKMIIDRAP-- 109 (460)
T ss_dssp EEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHH------------HSCCCCCTTCCCHHHHHHHHHHHHHSC--
T ss_pred EEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh------------ccccccccccCCHHHHHHHHHHHhhCC--
Confidence 3334456678999987 45553 46666666654221 111344344556788888888876643
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCCCChhhhcccCC------------CcEEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD--------PGDAFLLPTPYYPGFDRDLKWRP------------GVEIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~~------------g~~~~~v~~~ 164 (464)
.+.++|++|+|+++++..+++++.. +++.|++.+|+|+++...+.... ...+..++..
T Consensus 110 --~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 187 (460)
T 3gju_A 110 --KGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAP 187 (460)
T ss_dssp --TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCC
T ss_pred --CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCC
Confidence 4678999999999999999998863 46999999999987654322110 1123344422
Q ss_pred C--C-CCcccC--------HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 165 S--S-NGFRIT--------ISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 165 ~--~-~~~~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. . +++..+ +++|++.+++. ...++++|++..++|++|. +++.+.+++|.++|++||+++|+||+|.
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~le~~i~~~--~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 265 (460)
T 3gju_A 188 YYFRRTDRSMSEEQFSQHCADKLEEMILAE--GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT 265 (460)
T ss_dssp CGGGCSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccccCCccccChhHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 1 0 111223 57788877642 1125665555544677776 6788889999999999999999999999
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH---------hccc
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK---------MSSF 302 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~---------~~~~ 302 (464)
++...+. . ... .... .... +.+|||+++ .| +|+||+++++ .+.+.+.. ....
T Consensus 266 g~gr~g~--~-~~~-~~~~---------~~pd---i~t~sK~l~-gG~~~lg~v~~~~-~i~~~~~~~~~~~~~~~~~~t 327 (460)
T 3gju_A 266 GFGRLGT--M-FGS-DHYG---------IKPD---LITIAKGLT-SAYAPLSGVIVAD-RVWQVLVQGSDKLGSLGHGWT 327 (460)
T ss_dssp TTTTTSS--S-CHH-HHHT---------CCCS---EEEECGGGT-TTSSCCEEEEEEH-HHHHHHHHHHHHHCSCSCCCT
T ss_pred CCCcccc--c-chH-hhcC---------CCCC---eeeeehhhc-CCCCCeEEEEECH-HHHHHHhcccccccccccCCC
Confidence 7533332 1 111 1211 1122 337899997 56 8999999954 45555532 1223
Q ss_pred CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCcccccC-C----hhH
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSN-T----FEA 376 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~~~-~----~~~ 376 (464)
++.++++|+++.++|+..+- +++.++.++..+..++.+.+.+.+++ +...++.+ .|+++++....... . ...
T Consensus 328 ~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 405 (460)
T 3gju_A 328 YSAHPICVAAGVANLELIDE-MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDG-MLAAVEFVADKDDRVFFDASQKI 405 (460)
T ss_dssp TTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTTTTBCCCGGGCH
T ss_pred CCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeee-EEEEEEEccCccccccccchHHH
Confidence 45788899988888873221 22355555555666666767776663 44445555 47778776432110 0 011
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 377 EKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 377 ~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
..+++..++ ++||.++|+. ..+++||+++. .+++++++++++|++++++.
T Consensus 406 ~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 406 GPQVATALA-ASGVIGRAMP-----QGDILGFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp HHHHHHHHH-HTTEECEECS-----SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCeEEecCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 234666665 6699999875 25789999664 68999999999999998764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=246.93 Aligned_cols=332 Identities=14% Similarity=0.103 Sum_probs=219.2
Q ss_pred CCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 32 LHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 32 ~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
+.+...+|||+.+. +++ +++.+.+++.+..+ ....+.. .+..++++.+++.+.+..+
T Consensus 53 d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~-------------~~~~~~~-~~~~~~~~~l~~~la~~~g----- 113 (420)
T 2pb2_A 53 DQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGE-------------TLWHTSN-VFTNEPALRLGRKLIDATF----- 113 (420)
T ss_dssp ETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHT-------------TCCCCCT-TSCCHHHHHHHHHHHHHSS-----
T ss_pred ECCCCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hcccccC-ccCCHHHHHHHHHHHhhCC-----
Confidence 34456789998763 444 34666666665421 1111111 1234666777777765533
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCCcE------------EEEEecCCCC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPGVE------------IVPIHCSSSN 167 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g~~------------~~~v~~~~~~ 167 (464)
.++|++|+|+++++..+++++.. +| +.|++.+|+|+++...+....|.+ +..++.
T Consensus 114 -~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~---- 188 (420)
T 2pb2_A 114 -AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF---- 188 (420)
T ss_dssp -CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT----
T ss_pred -CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC----
Confidence 57999999999999999998865 67 589999999987654322111432 444443
Q ss_pred CcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccch
Q 037587 168 GFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISI 246 (464)
Q Consensus 168 ~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~ 246 (464)
.|+++|++.+++ ++++|++++++|++|. +++.+++++|.++|+++|+++|+||+|.++.+.+. .+ ..
T Consensus 189 ---~d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~--~~-~~ 256 (420)
T 2pb2_A 189 ---NDLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD--LF-AY 256 (420)
T ss_dssp ---TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SS-HH
T ss_pred ---CCHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc--HH-HH
Confidence 278999888753 7888888777888884 68999999999999999999999999987543332 21 11
Q ss_pred hhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--hcccCCCChHHHHHHHHHcCCchhhH
Q 037587 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--MSSFGLVSSQTQYLLSRMLSDKKFTC 324 (464)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~ 324 (464)
+... ...+++ ||||.+| +|+|+||++++++ +.+.+.. ....+..+++++.++.++|+..+.
T Consensus 257 -~~~~---------~~~dii---t~sK~l~-~G~~iG~~~~~~~-l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-- 319 (420)
T 2pb2_A 257 -MHYG---------VTPDIL---TSAKALG-GGFPVSAMLTTQE-IASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-- 319 (420)
T ss_dssp -HHHT---------CCCSEE---EECGGGG-TTSCCEEEEECHH-HHTTCC----CCEECCCHHHHHHHHHHHHHHSS--
T ss_pred -HhcC---------CCCCeE---Eeccccc-CCCceEEEEEhHH-HHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh--
Confidence 1111 113333 7899999 9999999999554 4443332 222235688888887777653221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--C---CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC
Q 037587 325 NYMKENRKRLRKRKEMLVSGLKVA--G---IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH 399 (464)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~~--g---~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~ 399 (464)
+...+.++++++++.+.|+++ + +...++.+ .|+|++++.... ....+++..++ ++||.+.|+.
T Consensus 320 ---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~----~~~~~l~~~l~-~~Gi~v~~~~--- 387 (420)
T 2pb2_A 320 ---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMG-LLIGAELKPKYK----GRARDFLYAGA-EAGVMVLNAG--- 387 (420)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEET-TEEEEEECGGGT----TCHHHHHHHHH-HTTEECEESS---
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecc-eEEEEEECCCch----HHHHHHHHHHH-HCCCEEEeCC---
Confidence 223444555666666666553 2 22234444 588888864210 01235677766 5799999873
Q ss_pred CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 400 CNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 400 ~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
++++||+++. .+++++++++++|++++++
T Consensus 388 ---~~~iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 388 ---ADVMRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5689999764 6899999999999998865
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-29 Score=247.83 Aligned_cols=326 Identities=13% Similarity=0.158 Sum_probs=226.3
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
.++|||+.+.++++ +.+.+++.+... . ..|.+..+..+++++++++++ .+ +++++
T Consensus 30 ~~~id~~~~~~~~~-~~v~~a~~~~~~-------------~-~~y~~~~~~~~l~~~la~~~~--------~~--~~v~~ 84 (399)
T 2oga_A 30 VPFLDLKAAYEELR-AETDAAIARVLD-------------S-GRYLLGPELEGFEAEFAAYCE--------TD--HAVGV 84 (399)
T ss_dssp BCSCCHHHHHHHTH-HHHHHHHHHHHH-------------H-TCCSSSHHHHHHHHHHHHHTT--------SS--EEEEE
T ss_pred CcccccCcCCCCCC-HHHHHHHHHHHh-------------c-CCCCCchhHHHHHHHHHHHHC--------CC--eEEEe
Confidence 36789999888766 555555555311 1 256655677899999999975 22 56777
Q ss_pred CChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 116 AGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 116 ~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
+|+++++..++.++ +++||+|+++.|+|+.+...+... |++++.+++++ +++.+|++.+++.+++ ++++|+
T Consensus 85 ~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~ 156 (399)
T 2oga_A 85 NSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSAT-GATPVPVEPHE-DHPTLDPLLVEKAITP------RTRALL 156 (399)
T ss_dssp SCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCS-SSSSBCHHHHHHHCCT------TEEEEC
T ss_pred cCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHC-CCEEEEEecCC-CCCCcCHHHHHHhcCC------CCeEEE
Confidence 88899999999999 899999999999999998888877 99999999874 3578999999988754 677666
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC--
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL-- 271 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~-- 271 (464)
|+||||...+ +++|.++|+++|+++|+||+|..+. +... .+..+ ..+++.|+
T Consensus 157 ---~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~--------------~di~~~S~~~ 211 (399)
T 2oga_A 157 ---PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAG--------------SSVAAFSFYP 211 (399)
T ss_dssp ---CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCT--------------TCEEEEECCT
T ss_pred ---EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccc--------------cCEEEEeCCC
Confidence 5789999876 6778888999999999999998542 2211 11101 23678888
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhccc--------------CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHH
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSSF--------------GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKR 337 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 337 (464)
||.+|.+| |+||++++++.+.+.+...... +.++.+.+.++...++.. ++..+..++.
T Consensus 212 sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~-------~~~~~~~~~~ 283 (399)
T 2oga_A 212 GKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL-------DSWNGRRSAL 283 (399)
T ss_dssp TSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH-------HHHHHHHHHH
T ss_pred CccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 79999779 9999998756666555543221 134566666665555432 2223334455
Q ss_pred HHHHHHHHHhC-CCeee-cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC---------C-----
Q 037587 338 KEMLVSGLKVA-GIRCL-KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC---------N----- 401 (464)
Q Consensus 338 ~~~l~~~l~~~-g~~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~---------~----- 401 (464)
.+++.+.|.++ |+.+. .+.++.++|+.++-... ...++...| .++||.++++..... .
T Consensus 284 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 357 (399)
T 2oga_A 284 AAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTE-----RRDELRSHL-DARGIDTLTHYPVPVHLSPAYAGEAPPEGS 357 (399)
T ss_dssp HHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECS-----SHHHHHHHH-HHTTBCCBCSCSSCGGGSHHHHTTSCCTTS
T ss_pred HHHHHHHhccCCCccccCCCCCCcceeEEEEEECC-----CHHHHHHHH-HHCCCceecCCCCccccchhhcccCCCCCC
Confidence 66788888876 66654 24445555533321110 122466666 467999987532100 0
Q ss_pred C-------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 402 E-------PGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 402 ~-------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
. .+++||+++. .++++++.++++|++++++.+
T Consensus 358 ~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 358 LPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp CHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred ChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 0 2579999976 689999999999999987643
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=241.35 Aligned_cols=288 Identities=13% Similarity=0.098 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh-hhhcccCCCcEEEEEecCC
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF-DRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~-~~~~~~~~g~~~~~v~~~~ 165 (464)
.++.+.+.+.+.+.++ . .++++|++|+|+++++.+++.+++.+ +.+++..|.|... ...+... |++++.++.+
T Consensus 42 ~~~~~~~~~~la~~~g--~-~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~-g~~~~~v~~~- 115 (362)
T 3ffr_A 42 EEVYKTASDNLKTLLE--L-PSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFYEFAGEL-GREAYKEEAA- 115 (362)
T ss_dssp HHHHHHHHHHHHHHTT--C-CTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHHHHHHHT-TCEEEEEECC-
T ss_pred HHHHHHHHHHHHHHhC--C-CCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHHHHHHHh-CCCeEEEecC-
Confidence 3455555555555544 1 14678999999999999999999988 5566666666522 2344555 9999999975
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC-CeEEEEeccccccccCCCCCCcc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK-RIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~-~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
.++.+|+++++ + .+++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|+.. .. + .
T Consensus 116 -~~~~~d~~~l~--~------~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~---~~--~-~ 177 (362)
T 3ffr_A 116 -FGKGFYPADIT--V------PADAEIICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLP---YP--K-F 177 (362)
T ss_dssp -TTCCCCGGGCC--C------CTTCCEEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTT---SS--C-C
T ss_pred -CCCCCCHHHHh--c------cCCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccC---Cc--c-c
Confidence 35678999887 3 248999999999999999998 66688889999 9999999999732 21 1 1
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhcc----------------------
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSS---------------------- 301 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~---------------------- 301 (464)
. + ....+++.|+||+++ ++|+ |+++++++ +.+.+.....
T Consensus 178 ~---~------------~~~d~~~~s~~K~~~~~~G~--g~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~ 239 (362)
T 3ffr_A 178 D---W------------TKIDSVFFSVQKCFGLPAGL--GVWILNDR-VIEKSKALLAKRKSIGTYHTIPSMLEKARVNQ 239 (362)
T ss_dssp C---T------------TSCSEEEEETTSTTCCCSCC--EEEEEEHH-HHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTC
T ss_pred C---h------------hHCcEEEEecccccCCCCce--EEEEECHH-HHHHhhhccccCCCCcccccHHHHHHHhhcCC
Confidence 1 1 013477899999998 7784 66777544 4333333221
Q ss_pred -cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC----CccEEEEEecCcccccCChh
Q 037587 302 -FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS----NAGLFCWVDMRHLLVSNTFE 375 (464)
Q Consensus 302 -~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g~f~~~~l~~~~~~~~~~ 375 (464)
.++.+...+.++..+++... ...+++.++.++++++++.+.|+++ |+++.++ .++.++|+.++.
T Consensus 240 ~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-------- 309 (362)
T 3ffr_A 240 TPETPNAMNIFLLGKVTGDML--QISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM-------- 309 (362)
T ss_dssp CSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--------
T ss_pred CCCCchHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--------
Confidence 44566666766666654211 1125667788888999999999998 8887652 235678888874
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 376 AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
...++...|. ++||.+++|..+ ..++++||+++. .+++++++++++|++++
T Consensus 310 ~~~~~~~~l~-~~gi~~~~g~~~--~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 310 LPGEINKILE-PFDMAVGAGYGS--KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp CHHHHHHHHG-GGTEEEEECSGG--GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-HCCeEEecCccc--cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 1234666665 559999998543 346899999986 68999999999998764
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=241.10 Aligned_cols=298 Identities=15% Similarity=0.170 Sum_probs=213.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcE
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVE 157 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~ 157 (464)
.|.+..+..++|++++++++ . +++|++++| ++++.+++.++ +++||+|+++.|+|+.+...+... |++
T Consensus 33 ~~~~~~~~~~l~~~la~~~~--------~-~~~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~ 101 (388)
T 1b9h_A 33 WRMGGDEVNSFEREFAAHHG--------A-AHALAVTNG-THALELALQVMGVGPGTEVIVPAFTFISSSQAAQRL-GAV 101 (388)
T ss_dssp BTTTCSHHHHHHHHHHHHTT--------C-SEEEEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred eecCCHHHHHHHHHHHHHhC--------C-CeEEEeCCH-HHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 45555678999999999986 2 357777777 89999999999 899999999999999998888777 999
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-c
Q 037587 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-F 236 (464)
Q Consensus 158 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~ 236 (464)
++.++++++ +|.+|++.|++.+++ ++++|+ |+||||.+.+ +++|.++|+++|+++|+|++|+... +
T Consensus 102 ~~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~ 168 (388)
T 1b9h_A 102 TVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARW 168 (388)
T ss_dssp EEEECBCTT-TCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEE
T ss_pred EEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHHHHcCCEEEEecchhcCCcc
Confidence 999998753 578999999988753 677655 9999999865 6778888889999999999998522 2
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH--HHHHHHhccc------------
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV--VSAATKMSSF------------ 302 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~--~~~~~~~~~~------------ 302 (464)
.+. .+..+ + ++++.||||..+++|.|+||++++++.+ .+.+......
T Consensus 169 ~~~-----~~~~~-------------~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (388)
T 1b9h_A 169 QGK-----RVGEL-------------D-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHK 229 (388)
T ss_dssp TTE-----EGGGS-------------S-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCC
T ss_pred CCe-----ecccc-------------c-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceee
Confidence 111 21111 2 4678899977777778999999976545 3434332211
Q ss_pred --CC---CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec------CCccEEEEEecCcccc
Q 037587 303 --GL---VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK------SNAGLFCWVDMRHLLV 370 (464)
Q Consensus 303 --~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~------~~~g~f~~~~l~~~~~ 370 (464)
+. .+.+...++...+ +++++.++.++++++++.+.|+++ |+.+.. +.+++|+|+.++...
T Consensus 230 ~~g~~~~~~~~~~a~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 301 (388)
T 1b9h_A 230 IAGSNMRLNEFSASVLRAQL-------ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT- 301 (388)
T ss_dssp SCCCBCBCBHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC-
T ss_pred cccccCCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC-
Confidence 11 2223222222222 224556667777889999999987 787764 345679999997420
Q ss_pred cCChhHHHHHHHHHHHhcCeEEeCCCCCCCCC---------------------------CCeEEEEeec-C-CHHHHHHH
Q 037587 371 SNTFEAEKELWKKIIFEVGLNISPGSSCHCNE---------------------------PGWFRICFAN-I-TEETLQVA 421 (464)
Q Consensus 371 ~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~---------------------------~~~~Ris~~~-~-~~e~l~~~ 421 (464)
.....++...|. ++||.++++....... .+.+||+++. + ++++++.+
T Consensus 302 ---~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~ 377 (388)
T 1b9h_A 302 ---EERRNALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHAT 377 (388)
T ss_dssp ---HHHHHHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHH
T ss_pred ---cccHHHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHH
Confidence 012335666665 6799998875321000 1359999977 7 89999999
Q ss_pred HHHHHHHHHh
Q 037587 422 LQRIKVFAQS 431 (464)
Q Consensus 422 l~~l~~~l~~ 431 (464)
++.|++++++
T Consensus 378 ~~~l~~~~~~ 387 (388)
T 1b9h_A 378 AEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-28 Score=242.69 Aligned_cols=345 Identities=14% Similarity=0.112 Sum_probs=210.5
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHH-HHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELV-KLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia-~~~~~~~~~~~~~~~~~i~it 115 (464)
+.|+|..++|+. ++.+.+++.+..... .. .+ ......|+.. ...++.+.++ +.+.+..+ .+. ..+++
T Consensus 33 ~~i~l~~~~~~~-~~~v~~a~~~~~~~~-~~-~~---~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~----~~~-~~v~~ 100 (425)
T 3ecd_A 33 SQVELIASENIV-SRAVLDAQGSVLTNK-YA-EG---YPGKRYYGGC-EFADEVEALAIERVKRLFN----AGH-ANVQP 100 (425)
T ss_dssp HSEECCTTCCCC-CHHHHHHHTSGGGSS-CT-TC----------------CCHHHHHHHHHHHHHHT----CSE-EECCC
T ss_pred cceeeecccCCC-CHHHHHHHhhhhhcc-cc-cC---CCcchhcCCC-hHHHHHHHHHHHHHHHHhC----CCC-ceeec
Confidence 458998888887 445555555431100 00 00 0000112111 1112333333 44444433 333 23458
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCC---hhhhcccCCCc--EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 116 AGSTAANETLMFCLADPGDAFLLPTPYYPG---FDRDLKWRPGV--EIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|+++++..++.+++++||.|+++.|+|+. +....... |. +++.++.++ +.+.+|+++|++.+.+. ++
T Consensus 101 ~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~ 173 (425)
T 3ecd_A 101 HSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALS-GKWFNALQYGVSR-DTMLIDYDQVEALAQQH-----KP 173 (425)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCCT-TTSSCCHHHHHHHHHHH-----CC
T ss_pred CchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhc-ccceeeeecCCCc-ccCccCHHHHHHHHhhc-----CC
Confidence 888899999999999999999999999987 22111122 44 555666553 35789999999998742 78
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc-ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT-VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
++|++++|+||+. .++++|.++|+++|+++|+||+|... .+.+. . .+.. + ...+++.
T Consensus 174 ~~v~~~~~~~~~~-----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~--~-~~~~---~-----------~~di~~~ 231 (425)
T 3ecd_A 174 SLIIAGFSAYPRK-----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGR--H-ANPV---E-----------HAHVVTS 231 (425)
T ss_dssp SEEEEECSCCCSC-----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS--S-CCGG---G-----------TCSEEEE
T ss_pred cEEEEccccCCCc-----CCHHHHHHHHHHcCCEEEEECcChHhhhhccc--c-cCch---h-----------cCcEEEe
Confidence 8999999999753 34688999999999999999996432 23322 1 1211 1 1237789
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK 346 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 346 (464)
||||++ +|+|+||++++++.+.+.+......+ +.+...+.++..++.. ...+++++.++.++++++++.+.|.
T Consensus 232 s~sK~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~ 307 (425)
T 3ecd_A 232 TTHKTL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGE--ALTDDFKTYIDRVLANAQALGDVLK 307 (425)
T ss_dssp ESSGGG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999988 67899999997666666555443322 2333333333333321 1123456777888888899999999
Q ss_pred hCCCeeecC-CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeec-----CCHH
Q 037587 347 VAGIRCLKS-NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFAN-----ITEE 416 (464)
Q Consensus 347 ~~g~~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~-----~~~e 416 (464)
+.|+++.++ .+++++|+.++.... .. +.+...+.++||.++ ||..+.....+++|+++.. .+++
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e 381 (425)
T 3ecd_A 308 AGGVDLVTGGTDNHLLLVDLRPKGL-----KG-AQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAA 381 (425)
T ss_dssp HTTCEEGGGSCSSSEEEEECGGGTC-----CH-HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHH
T ss_pred hCCCeeccCCCCceEEEEEeCCCCC-----CH-HHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHH
Confidence 989888753 456788998864211 11 234455577899999 5543333345689999543 2489
Q ss_pred HHHHHHHHHHHHHHhh
Q 037587 417 TLQVALQRIKVFAQSC 432 (464)
Q Consensus 417 ~l~~~l~~l~~~l~~~ 432 (464)
++++++++|++++++.
T Consensus 382 ~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 382 EFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999886
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=240.50 Aligned_cols=297 Identities=11% Similarity=0.107 Sum_probs=200.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC--eEEEcCCCCCChhh---hccc
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGD--AFLLPTPYYPGFDR---DLKW 152 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd--~Vlv~~p~y~~~~~---~~~~ 152 (464)
..|++..+..+|+++++++++ . +. .++++|+++++..++.+++.+|| .|+++.++|..... ....
T Consensus 41 ~~y~~~~~~~~l~~~la~~~~--------~-~~-~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~ 110 (357)
T 3lws_A 41 DQYGTGAIIEPFEQKFADVLG--------M-DD-AVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKEL 110 (357)
T ss_dssp EETTEETTHHHHHHHHHHHHT--------C-SE-EEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHH
T ss_pred ccccCChHHHHHHHHHHHHhC--------C-Cc-EEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhc
Confidence 457766678999999999986 2 23 34557778899999999988888 67776666443322 2334
Q ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 153 RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL-GTAMTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 153 ~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPt-G~~~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
. |++++.++. +++.+|++++++. .++++|++++||||| |.+++.+++++|+++|+++|+++|+||+|
T Consensus 111 ~-g~~~~~v~~---~~~~~d~~~l~~~--------~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~ 178 (357)
T 3lws_A 111 H-PIETILVGA---ADRLMTLDEIKAL--------PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGAR 178 (357)
T ss_dssp S-SCEEEECSC---TTSCCCHHHHHTC--------CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred c-CcEEEEecC---CCCCcCHHHHhcC--------cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECch
Confidence 4 888888874 2456899998875 147899999999998 99999999999999999999999999998
Q ss_pred ccc--ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHHHHhccc-C---C
Q 037587 232 SGT--VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAATKMSSF-G---L 304 (464)
Q Consensus 232 ~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~~~~~~-~---~ 304 (464)
... .+.+. +...+.. ..+ +++.|+||+| |+.| ||++++ +.+.+.+.+.... . .
T Consensus 179 ~~~~~~~~~~-----~~~~~~~---------~~d--~~~~s~sK~~~~~~g---g~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (357)
T 3lws_A 179 LFEMLPYYEK-----TAAEIAG---------LFD--SIYISFYKGLGGIAG---AILAGP-AAFCQTARIWKRRYGGDLI 238 (357)
T ss_dssp HHHHHHHHTC-----CHHHHHT---------TSS--EEEEESSSTTCCSSC---EEEEEC-HHHHHHHHHHHHHTTCCCS
T ss_pred hhhhhhhcCC-----ChHHHHh---------cCC--EEEEeccccCCCCce---EEEEcC-HHHHHHHHHHHHHhcCCcc
Confidence 621 11122 2222322 113 3478999999 5444 999984 4555544433221 1 1
Q ss_pred CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cCCccEEEEEecCcccccCChhHHHHHHH
Q 037587 305 VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL-KSNAGLFCWVDMRHLLVSNTFEAEKELWK 382 (464)
Q Consensus 305 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~ 382 (464)
...+.+.++...+++ +.+.. +.+.++++++.+.|+++ |+++. .+.+++|+|++++.... ....++..
T Consensus 239 ~~~~~~~~~~~~l~~------~~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 307 (357)
T 3lws_A 239 SLYPYIVSADYYYEL------RKDRM-GQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA----DISPKLEQ 307 (357)
T ss_dssp CCHHHHHHHHHHHHH------HTTCH-HHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH----HHHHHHHH
T ss_pred cchHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH----HHHHHHHH
Confidence 223333333333332 22222 23466778899999987 88873 34555699999874210 11234544
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCeEEEEeec----CCHHHHHHHHHHHHHHH
Q 037587 383 KIIFEVGLNISPGSSCHCNEPGWFRICFAN----ITEETLQVALQRIKVFA 429 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~----~~~e~l~~~l~~l~~~l 429 (464)
.+ .++||.++||..|. .+.+++|++++. .+++++++++++|.+++
T Consensus 308 ~l-~~~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 308 VQ-EETGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HH-HHHCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HH-HhcCeEEecccccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 44 67899999997665 244589999863 37899999999998764
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=241.34 Aligned_cols=357 Identities=10% Similarity=0.008 Sum_probs=225.3
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccc-cCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELA-LFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
|..+.+...+|||+.+ .|++. +|.+.+++.+... ... .|....+..++++++++++.+.++
T Consensus 43 ~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~- 108 (459)
T 4a6r_A 43 YLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQME-------------ELPFYNTFFKTTHPAVVELSSLLAEVTP- 108 (459)
T ss_dssp EEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHH-------------HCSCCCTTSSSCCHHHHHHHHHHHHHSC-
T ss_pred EEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHH-------------hccccccccccCCHHHHHHHHHHHHhCC-
Confidence 3334455678999987 56653 4667766665421 111 343334557788888888877654
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCCCChhhhcccCCC------------cEEEEEec
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD--------PGDAFLLPTPYYPGFDRDLKWRPG------------VEIVPIHC 163 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~~g------------~~~~~v~~ 163 (464)
.+.++|++|+|+++++..+++++.. +++.|++.+|+|+++...+....| ..+..++.
T Consensus 109 ---~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (459)
T 4a6r_A 109 ---AGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQ 185 (459)
T ss_dssp ---TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECC
T ss_pred ---CCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCC
Confidence 5678999999999999999999875 579999999999977643222101 12233332
Q ss_pred CC--C-CCcccC--------HHHHHHHHHHHhhcCCceEEEEEeCCC-CCCCC-CCCHHHHHHHHHHHhhCCeEEEEecc
Q 037587 164 SS--S-NGFRIT--------ISALENAYQQAQTLNLKVKGVLITNPS-NPLGT-AMTHQELNHLINFSKSKRIHIVSDEI 230 (464)
Q Consensus 164 ~~--~-~~~~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P~-NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Dea 230 (464)
.. . +++ .| +++|++.+.+.. ..+++ +++++|+ |++|. .++.+.+++|.++|++||+++|+||+
T Consensus 186 p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~--~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv 261 (459)
T 4a6r_A 186 PWWYKHGKD-MTPDEFGVVAARWLEEKILEIG--ADKVA-AFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEV 261 (459)
T ss_dssp CCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred CccccCCcc-cCHHHHHHHHHHHHHHHHHHcC--CCCEE-EEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 11 0 111 34 677888776421 12444 5566664 55555 55899999999999999999999999
Q ss_pred ccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH-----HhcccCCC
Q 037587 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT-----KMSSFGLV 305 (464)
Q Consensus 231 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~-----~~~~~~~~ 305 (464)
|.++...+. . .. ..... ....+ .+|||+++..|+|+||+++ ++.+.+.+. .....++.
T Consensus 262 ~~g~gr~G~--~-~~-~~~~~---------~~pdi---~t~sK~l~gg~~~lg~v~~-~~~i~~~~~~~~~~~~~~t~~~ 324 (459)
T 4a6r_A 262 ICGFGRTGE--W-FG-HQHFG---------FQPDL---FTAAKGLSSGYLPIGAVFV-GKRVAEGLIAGGDFNHGFTYSG 324 (459)
T ss_dssp TTTTTTTSS--S-SH-HHHHT---------CCCSE---EEECGGGGTTSSCCEEEEE-CHHHHHHHHHHCTTHHHHHHCS
T ss_pred ccCCCcccc--c-ch-HhhcC---------CCCCe---eehhhhhcCCCCCccceee-CHHHHHHhhcCCCcccCCCCCC
Confidence 998543332 1 11 11211 11233 3789999844499999999 455555554 12233457
Q ss_pred ChHHHHHHHHHcCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCccccc-----CChhHHH
Q 037587 306 SSQTQYLLSRMLSDKKFTCNYMKENR-KRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVS-----NTFEAEK 378 (464)
Q Consensus 306 s~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~-----~~~~~~~ 378 (464)
++++++++.++|+..+- ++..++.+ +..+..++.+.+.|.++ .+...++.+. |+++++...... .......
T Consensus 325 ~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 402 (459)
T 4a6r_A 325 HPVCAAVAHANVAALRD-EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGM-VQAFTLVKNKAKRELFPDFGEIGT 402 (459)
T ss_dssp CHHHHHHHHHHHHHHHH-TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETT-EEEEEECSBTTTTBCCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE-EEEEEEecCccccccccchHHHHH
Confidence 88999988888873221 12233444 33344444454555554 3445555554 777777542111 0111233
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 379 ELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+++..++ ++||.++|+. +++||+++. .+++++++++++|++++++..
T Consensus 403 ~~~~~l~-~~Gv~v~~~g-------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 403 LCRDIFF-RNNLIMRACG-------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp HHHHHHH-HTTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HCCeEEecCC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5666665 5699999862 689999765 689999999999999987654
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=238.76 Aligned_cols=279 Identities=17% Similarity=0.148 Sum_probs=193.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~ 160 (464)
...++++.++++++ .+ +.++++++++++..++.+++++||.|+++.|+|+++...+ ... |.+++.
T Consensus 65 ~~~~l~~~la~~~g--------~~--~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~ 133 (398)
T 2rfv_A 65 TTDALEKKLAVLER--------GE--AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVRF 133 (398)
T ss_dssp HHHHHHHHHHHHHT--------CS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHhC--------CC--cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHc-CCEEEE
Confidence 34667777777764 33 4555556669999999999999999999999999877665 555 999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+ |++++++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|....+. .
T Consensus 134 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~-~- 195 (398)
T 2rfv_A 134 VDAA-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ-Q- 195 (398)
T ss_dssp ECTT-------SHHHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C-
T ss_pred eCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-C-
Confidence 8863 78899888753 7899999999999999986 788899999999999999999864332 1
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHhcc-c--CCCChHHHHHHHHH
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKMSS-F--GLVSSQTQYLLSRM 316 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~~~-~--~~~s~~~q~~~~~~ 316 (464)
. ..+ +.++++.|+||.++.+|+|+ ||++++++.+.+.++.... + ...+++.+.++...
T Consensus 196 ----~-~~~-------------~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T 2rfv_A 196 ----P-LQL-------------GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRG 257 (398)
T ss_dssp ----G-GGG-------------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHH
T ss_pred ----c-hhh-------------CCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhh
Confidence 1 112 45688999999998899998 9999965544424443322 2 35678888888888
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCeeec----CCccEEEEEecCcccccCChhHH
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA---------------GIRCLK----SNAGLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------------g~~~~~----~~~g~f~~~~l~~~~~~~~~~~~ 377 (464)
++.. ..+++ .+.++...+.+.|++. ++.+.. ..++ +++++++.. .
T Consensus 258 l~~~---~~~~~----~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~-~~~~~~~~~------~-- 321 (398)
T 2rfv_A 258 VKTL---GIRME----RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGG-IISFEIAGG------L-- 321 (398)
T ss_dssp HTTH---HHHHH----HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEETTH------H--
T ss_pred hhhH---HHHHH----HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCce-EEEEEEcCC------H--
Confidence 8653 22232 2334445555556543 222222 2355 566688631 0
Q ss_pred HHHHHHHHHh---cCeEEeCCCCCCC---------------------CCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 378 KELWKKIIFE---VGLNISPGSSCHC---------------------NEPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 378 ~~l~~~ll~~---~gI~v~pg~~f~~---------------------~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
+....++++ .||.+.+|..|.. ..++++|||++. .++++++.++++|++
T Consensus 322 -~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 322 -EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp -HHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 112334433 3888888866420 125799999997 456777777766654
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=242.20 Aligned_cols=328 Identities=13% Similarity=0.101 Sum_probs=213.7
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
..+.++.++|+++ ++.+.+++.+. .....|.+..+..+|+++++++++ .+ ..+++
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~--------------~~~~~~~~~~~~~~l~~~la~~~~--------~~--~~i~~ 69 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDN--------------LESDIYGNGAVIEDFETKIAKILG--------KQ--SAVFF 69 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTT--------------CBCCBTTBSHHHHHHHHHHHHHHT--------CS--EEEEE
T ss_pred chhhcCCCccccCCCHHHHHHHHhh--------------cccCcccCCHHHHHHHHHHHHHhC--------CC--cEEEe
Confidence 3355667778774 35555544431 122356655567899999999985 22 23555
Q ss_pred CChHHHHHHHHHHhcCCCCe--EEEcCCCCCChhhh--c-ccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 116 AGSTAANETLMFCLADPGDA--FLLPTPYYPGFDRD--L-KWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~--Vlv~~p~y~~~~~~--~-~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|+++++..++.+++.+||. |+++.++|...... . ... |++++.++.+ ++.+|++++++. . +++
T Consensus 70 ~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~-~------~~~ 138 (359)
T 3pj0_A 70 PSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQ-QITPLLLGTA---NQLLTIDDIKSL-R------EPV 138 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHH-CCEEEECSCT---TSCCCHHHHHTC-S------SCC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhc-CceEEecCCc---CCCcCHHHHHhc-c------CCc
Confidence 78889999999999888886 55555554322221 1 334 8899888763 467899999876 2 378
Q ss_pred EEEEEeCCCCCC-CCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 191 KGVLITNPSNPL-GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 191 ~~vil~~P~NPt-G~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
++|++++||||| |.+++.+++++|+++|+++|+++|+|++|........ ..+...+.. ...+++.
T Consensus 139 ~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~---~~~~~~~~~-----------~~d~~~~ 204 (359)
T 3pj0_A 139 SSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFY---QKSAEEICA-----------LFDSVYV 204 (359)
T ss_dssp SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHH---TCCHHHHHT-----------TCSEEEE
T ss_pred eEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhh---CCCHHHhhc-----------cCCEEEE
Confidence 999999999998 7999999999999999999999999999864321111 012222222 1224456
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-cC-C--CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAATKMSS-FG-L--VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~-~~-~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 345 (464)
||||.++.++ . ||+++ ++.+.+.+..... +. . ...+.+.++...++ ... +..+.+.++++++.+.|
T Consensus 205 s~sK~~~~~~-g-g~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~------~~~-~~~~~~~~~~~~l~~~L 274 (359)
T 3pj0_A 205 SFYKGIGGIA-G-AILAG-NDDFVQEAKIWKRRYGGDLISLYPYILSADYYFE------KRI-GKMAEYFEAAKGLAERF 274 (359)
T ss_dssp ESSSTTCCSS-C-EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHH------HHG-GGHHHHHHHHHHHHHHH
T ss_pred eccccCCCcc-e-EEEEC-CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH------HHH-HHhHHHHHHHHHHHHHH
Confidence 9999987553 3 78787 4555555544221 11 1 12233333223332 122 22334567778899999
Q ss_pred HhC-CCeee-cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec----CCHHHHH
Q 037587 346 KVA-GIRCL-KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN----ITEETLQ 419 (464)
Q Consensus 346 ~~~-g~~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~----~~~e~l~ 419 (464)
+++ |+++. .+.+++|+|++++.... ....++...+ .++||.++||..|+..+.+++|++++. .+.++++
T Consensus 275 ~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l-~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~ 349 (359)
T 3pj0_A 275 NSCSGVKTVPEVPVSNMFHVYFENSAD----EIGAILTKIQ-DETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLE 349 (359)
T ss_dssp HTSTTEEEESSSCSSSEEEEEESSCHH----HHHHHHHHHH-HHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHH
T ss_pred hhCCCceeeccCCcceEEEEEecCccc----hhHHHHHHHH-HhcCcEecCCccccCCCceEEEEEecCccccCCHHHHH
Confidence 987 88885 34445588888763210 1223455554 578999999988775556789999863 4789999
Q ss_pred HHHHHHHHH
Q 037587 420 VALQRIKVF 428 (464)
Q Consensus 420 ~~l~~l~~~ 428 (464)
+++++|.+.
T Consensus 350 ~~l~~l~~~ 358 (359)
T 3pj0_A 350 LVFRCLEKE 358 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998875
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=244.20 Aligned_cols=360 Identities=12% Similarity=0.059 Sum_probs=219.3
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA 116 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~ 116 (464)
+.+.+..++|+. ++.+.+++.+..... . + ........|+.......+.+...+.+.+.++ +++++|++++
T Consensus 31 ~~~~~~~~~n~~-~~~v~~a~~~~~~~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~~v~~~s 100 (420)
T 3gbx_A 31 EHIELIASENYT-SPRVMQAQGSQLTNK-Y---A-EGYPGKRYYGGCEYVDVVEQLAIDRAKELFG----ADYANVQPHS 100 (420)
T ss_dssp HSEECCTTCCCC-CHHHHHHHTSGGGGC-C---C---------------CHHHHHHHHHHHHHHHT----CSEEECCCSS
T ss_pred cceeeeccCCCC-CHHHHHHHHHHHhcc-c---c-cCCCCccccCchHHHHHHHHHHHHHHHHHhC----CCCceeEecC
Confidence 347777777774 555666665532100 0 0 0000001222222233444433345554444 5667777777
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChh---hhcccC-CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 117 GSTAANETLMFCLADPGDAFLLPTPYYPGFD---RDLKWR-PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 117 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~---~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
| ++++..++.+++++||.|+++.|+|+.+. ...... .+...++++.+ .++.+|+++|++.+++. ++++
T Consensus 101 G-s~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~ 172 (420)
T 3gbx_A 101 G-SQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEH-----KPKM 172 (420)
T ss_dssp H-HHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHH-----CCSE
T ss_pred c-HHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhc-----CCeE
Confidence 7 78999999999999999999999998743 111111 03455566655 46778999999999762 5889
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
|++++|+||+ ..+ +++|.++|+++|+++|+||+|....+... ..... .. ...+++.|+|
T Consensus 173 v~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~--~~~~~---~~-----------~~di~~~s~s 231 (420)
T 3gbx_A 173 IIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAG--VYPNP---VP-----------HAHVVTTTTH 231 (420)
T ss_dssp EEECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTT--SSCCS---TT-----------TSSEEEEESS
T ss_pred EEEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecc--cCCcc---cc-----------cCCEEEeecc
Confidence 9999999974 444 78899999999999999999864322222 11111 11 2347899999
Q ss_pred cCCCCCccEEEEEEecC--HHHHHHHHHhccc---CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037587 273 KDFSMPGFRVGMIYSNN--ERVVSAATKMSSF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV 347 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~--~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 347 (464)
|+++ |.+.||+++++ ..+.+.+...... ...+...+.++..++... ..+++++.++.+.++++++.+.|.+
T Consensus 232 K~~~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 307 (420)
T 3gbx_A 232 KTLA--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA--MEPEFKVYQQQVAKNAKAMVEVFLN 307 (420)
T ss_dssp GGGC--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHh
Confidence 9984 55569999976 3555544443222 122333333333333211 1234677788888899999999998
Q ss_pred CCCeeecC-CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeC-------CCCCCCCCCCeEEEEeec-----CC
Q 037587 348 AGIRCLKS-NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP-------GSSCHCNEPGWFRICFAN-----IT 414 (464)
Q Consensus 348 ~g~~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~p-------g~~f~~~~~~~~Ris~~~-----~~ 414 (464)
.|+++.++ ..++++|+.++.... .. +.+..+++++||.+.| +..|+ ++.+||+++. .+
T Consensus 308 ~g~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~v~~~~~~~~~~~~~~---~~~iRi~~~~~~~~~~~ 378 (420)
T 3gbx_A 308 RGYKVVSGGTENHLFLLDLVDKNL-----TG-KEADAALGRANITVNKNSVPNDPKSPFV---TSGIRIGSPAVTRRGFK 378 (420)
T ss_dssp TTCEEGGGSCSSSEEEEECGGGTC-----CH-HHHHHHHHHTTEECEEECCTTCSSCTTT---CSEEEEECHHHHHTTCC
T ss_pred cCCeeccCCCCCeEEEEEcCCCCC-----CH-HHHHHHHHHCCcEeccccCCCCccccCC---CcceEEecchhcccCCC
Confidence 89888653 445688888864211 11 2344555788999998 33332 3459999864 34
Q ss_pred HHHHHHHHHHHHHHHHhhCccccccccceeeeee
Q 037587 415 EETLQVALQRIKVFAQSCNPQMLLLQRRSIIGKW 448 (464)
Q Consensus 415 ~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 448 (464)
++++++++++|++++++...+....++..+..+|
T Consensus 379 ~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 412 (420)
T 3gbx_A 379 EAEVKELAGWMCDVLDNINDEATIERVKAKVLDI 412 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHH
Confidence 7999999999999998876554444444444444
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=243.26 Aligned_cols=351 Identities=11% Similarity=0.036 Sum_probs=211.9
Q ss_pred CCCCCCCCceEEeeccc--cccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAE--NQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||++.+. |++. +|.+.+++.+.... .....|++ ....+|++++++++.
T Consensus 48 ~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~-----------~~~~~~~~-~~~~~l~~~la~~~~------ 109 (434)
T 3l44_A 48 YFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAEN-----------GVLYGTPT-ALEVKFAKMLKEAMP------ 109 (434)
T ss_dssp EEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHH-----------CSCCSSCC-HHHHHHHHHHHHHCT------
T ss_pred EEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHh-----------CcCCCCCC-HHHHHHHHHHHHhCC------
Confidence 33344566789998774 5553 56677776664221 11123432 234566666666542
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcc------------
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFR------------ 170 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~------------ 170 (464)
.+++|++|+|+++++..+++++.. +++.|++.+|+|+++...+....|............++.
T Consensus 110 ---~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 3l44_A 110 ---ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF 186 (434)
T ss_dssp ---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT
T ss_pred ---CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc
Confidence 578999999999999999988754 678999999999887655443323322211111101110
Q ss_pred cCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhh
Q 037587 171 ITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248 (464)
Q Consensus 171 ~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~ 248 (464)
-|+++|++.+++. ..+++ +++++| +|++|.+. +.+.+++|.++|++||+++|+||+|.++ ..+. . ....
T Consensus 187 ~d~~~le~~l~~~---~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~--~--~~~~ 257 (434)
T 3l44_A 187 NNVETLKEALDKW---GHEVA-AILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY--G--GAQD 257 (434)
T ss_dssp TCHHHHHHHHHHH---GGGEE-EEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS--S--CHHH
T ss_pred ccHHHHHHHHHhC---CCCEE-EEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc--c--HHHH
Confidence 1789999988753 12455 455556 55666655 8888999999999999999999999986 3222 1 1111
Q ss_pred hhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-----hcccCCCChHHHHHHHHHcCCchhh
Q 037587 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-----MSSFGLVSSQTQYLLSRMLSDKKFT 323 (464)
Q Consensus 249 l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~l~~~~~~ 323 (464)
... .... +.||||.+| +|+|+||+++ ++.+.+.+.. ....++.+++++.++.++++..+-
T Consensus 258 ~~~---------~~~d---i~t~sK~~~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~- 322 (434)
T 3l44_A 258 LLG---------VTPD---LTALGKVIG-GGLPIGAYGG-KKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ- 322 (434)
T ss_dssp HHT---------CCCS---EEEEEGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-
T ss_pred HcC---------CCCC---eeehhhhhc-CCcCeeeEEE-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-
Confidence 211 1122 458999999 8999999988 4555554443 122345778888888777652111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCe-eecCCccEEEEEecCccccc-------CChhHHHHHHHHHHHhcCeEEeCC
Q 037587 324 CNYMKENRKRLRKRKEMLVSGLKVAGIR-CLKSNAGLFCWVDMRHLLVS-------NTFEAEKELWKKIIFEVGLNISPG 395 (464)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~g~f~~~~l~~~~~~-------~~~~~~~~l~~~ll~~~gI~v~pg 395 (464)
++..++.++..+..++.|.+.+..+++. ..++.+ .|+++.+...... .......+++..++ ++||.++|+
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~ 400 (434)
T 3l44_A 323 EGLYEKLDELGATLEKGILEQAAKHNIDITLNRLK-GALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML-QEGVNLAPS 400 (434)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEET-TEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH-HTTEECCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeec-cEEEEEEecCcccchhhccccCHHHHHHHHHHHH-HCCeEEeec
Confidence 1123333332233333344444444443 333444 5777777432110 11112234666665 679999987
Q ss_pred CCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 396 SSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 396 ~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
. .+++|+++. .+++++++++++|++++++.+
T Consensus 401 ~------~~~~rl~~~-~t~e~i~~~l~~l~~~l~~~~ 431 (434)
T 3l44_A 401 K------YEAWFLTTE-HTKEDIEYTIEAVGRAFAALA 431 (434)
T ss_dssp T------TCCEECCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred C------CCcEEEecc-cCHHHHHHHHHHHHHHHHHHH
Confidence 4 246898765 599999999999999987653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-27 Score=238.28 Aligned_cols=360 Identities=9% Similarity=0.025 Sum_probs=220.3
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||+.+ .+++. ++.+.+++.+.. .....|....+..+++.++++++.+..+.
T Consensus 54 ~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~~- 119 (451)
T 3oks_A 54 IVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQV-------------GDFTHTCFMVTPYEGYVAVCEQLNRLTPV- 119 (451)
T ss_dssp EEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHH-------------TTCSCCTTTTSCCHHHHHHHHHHHHHSSC-
T ss_pred EEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHH-------------HhcccccCCccCCHHHHHHHHHHHHhCCc-
Confidence 4444456678999987 55553 466666666542 22334554445678888888888776431
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCC-------------CcEEEEEecCCC---
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRP-------------GVEIVPIHCSSS--- 166 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~-------------g~~~~~v~~~~~--- 166 (464)
...++|++|+|+++++..+++.+.. .++.|++.+++|+++...+.... ...+..++....
T Consensus 120 --~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (451)
T 3oks_A 120 --RGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRD 197 (451)
T ss_dssp --CSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHH
T ss_pred --CCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccc
Confidence 1257899999999999999987653 45899999999987654322110 113444543310
Q ss_pred -----CCcc---cCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCC--CCCCHHHHHHHHHHHhhCCeEEEEecccccccc
Q 037587 167 -----NGFR---ITISALENAYQQAQTLNLKVKGVLITNPSNPLG--TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF 236 (464)
Q Consensus 167 -----~~~~---~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG--~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~ 236 (464)
+.-. -+++.+++.+++.. +++..++++++|.|++| ...+.+.+++|.++|++||+++|+||+|.++..
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 275 (451)
T 3oks_A 198 AEFGKELATDGELAAKRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFAR 275 (451)
T ss_dssp GGGCTTTTTCHHHHHHHHHHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred cccccccchhhHHHHHHHHHHHHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence 0000 12444445554321 22334567778876666 344677799999999999999999999987543
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHH
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLS 314 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~ 314 (464)
.+. . ... .... .... +.||||.+| .|+|+||++++ +.+.+.+... ...+..++++|.++.
T Consensus 276 ~g~--~-~~~-~~~~---------~~pd---i~t~sK~l~-~G~~iG~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~ 337 (451)
T 3oks_A 276 TGA--M-FAC-EHEG---------IDPD---LIVTAKGIA-GGLPLSAVTGR-AEIMDSPHVSGLGGTYGGNPIACAAAL 337 (451)
T ss_dssp TSS--S-SGG-GGGT---------CCCS---EEEECGGGG-TTSSCEEEEEE-HHHHTCSCTTSBCCSSSSCHHHHHHHH
T ss_pred ccc--c-hhh-hhcC---------CCCC---eeeehhhhh-CCcceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHH
Confidence 332 1 111 1111 1122 238999998 59999999984 4454444322 223457888998888
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCccEEEEEecCccc-ccCChhHHHHHHHHHHHhcCeEE
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLL-VSNTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~-~~~~~~~~~~l~~~ll~~~gI~v 392 (464)
++|+...- ++..++.++..+..++.+.+.+.+++ +...++. |.|+|+.+.... .........+++..++ ++||.+
T Consensus 338 aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v 414 (451)
T 3oks_A 338 ATIETIES-EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGR-GAMIAMELVKAGTTEPDADLTKALCAGAH-AAGVIV 414 (451)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEBSTTSCCBCHHHHHHHHHHHH-HTTEEC
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEe-eEEEEEEEecCccCCCCHHHHHHHHHHHH-hCCcEE
Confidence 88763211 12233333333333344444444443 3333444 458888874310 0011123345666665 679999
Q ss_pred eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 393 SPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 393 ~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
.|+..| .+++||+++. .+++++++++++|++++++
T Consensus 415 ~~~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 415 LSCGTY----GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EEECTT----SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred ecCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 998655 3589998876 6899999999999999864
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-28 Score=242.45 Aligned_cols=326 Identities=12% Similarity=0.147 Sum_probs=221.6
Q ss_pred EeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCC-CCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCC
Q 037587 40 QMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQD-YHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAG 117 (464)
Q Consensus 40 ~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G 117 (464)
+|+.+++++++ +.+.+++.+... . ..|++ ..+..++|++++++++ .++|++|+|
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~-------------~-~~y~~~~~~~~~l~~~la~~~~----------~~~v~~~~g 75 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALD-------------S-QWLSNGGPLVREFEERVAGLAG----------VRHAVATCN 75 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHH-------------H-TCCSSSCHHHHHHHHHHHHHHT----------SSEEEEESC
T ss_pred cccccCCCCCChHHHHHHHHHHHh-------------c-CCcccCCHHHHHHHHHHHHHhC----------CCeEEEeCC
Confidence 68888888864 555665554321 1 24776 5678999999999985 258999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeC
Q 037587 118 STAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN 197 (464)
Q Consensus 118 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~ 197 (464)
+++++..++.++. +||+|+++.|+|+.+...+... |++++.+++++ ++|.+|++++++.+++ ++++|+++
T Consensus 76 gt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~- 145 (424)
T 2po3_A 76 ATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALRWI-GLTPVFADIDP-DTGNLDPDQVAAAVTP------RTSAVVGV- 145 (424)
T ss_dssp HHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTSSBCHHHHGGGCCT------TEEEEEEE-
T ss_pred HHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHHHc-CCEEEEEecCC-CcCCcCHHHHHHhhCc------CCcEEEEE-
Confidence 9999999999985 7899999999999998888776 99999999875 4678999999887753 78888886
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc-ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC
Q 037587 198 PSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS-GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS 276 (464)
Q Consensus 198 P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g 276 (464)
||||.. .++++|+++|+++|+++|+||+|. ++.+.+. ++..+ .. +++.||||..+
T Consensus 146 --~~tG~~---~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~-----~~~~~-------------~d-i~~~S~sk~K~ 201 (424)
T 2po3_A 146 --HLWGRP---CAADQLRKVADEHGLRLYFDAAHALGCAVDGR-----PAGSL-------------GD-AEVFSFHATKA 201 (424)
T ss_dssp --CGGGCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-----ETTSS-------------SS-EEEEECCTTSS
T ss_pred --CCCCCc---CCHHHHHHHHHHcCCEEEEECccccCCeECCe-----ecccc-------------cC-EEEEeCCCCCC
Confidence 489987 467888899999999999999998 4444322 21111 22 78999996666
Q ss_pred CCccEEEEEEecCHHHHHHHHHhcccCC-----C-----C-hHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037587 277 MPGFRVGMIYSNNERVVSAATKMSSFGL-----V-----S-SQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345 (464)
Q Consensus 277 ~~GlRiG~l~~~~~~~~~~~~~~~~~~~-----~-----s-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 345 (464)
++|+|+||++++++.+.+.+........ . + .+.+.+++..+.. .+.+++..++.++.++++.+.|
T Consensus 202 l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~L 277 (424)
T 2po3_A 202 VNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREHL 277 (424)
T ss_dssp SCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 6778999999975666555554332210 0 0 1122222222221 2234555566666777888888
Q ss_pred HhC-CCeeec-CCcc----EEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--------------CCCe
Q 037587 346 KVA-GIRCLK-SNAG----LFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--------------EPGW 405 (464)
Q Consensus 346 ~~~-g~~~~~-~~~g----~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--------------~~~~ 405 (464)
.++ |+.+.+ +.++ +++++.++...... ...++...+ .++||.+++. |... .+++
T Consensus 278 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~L-~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~ 351 (424)
T 2po3_A 278 ADLPGVLVADHDRHGLNNHQYVIVEIDEATTGI---HRDLVMEVL-KAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHT 351 (424)
T ss_dssp CSCTTEEECCGGGGSCCCCCCEEEEECHHHHSS---CHHHHHHHH-HHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHH
T ss_pred ccCCCccccCCCCCCccccEEEEEEECCccchh---hHHHHHHHH-HHCCCceecc--cCCccccchhhhhcCCCCChhH
Confidence 876 777765 3332 23446665310000 122455544 6789999872 2210 0122
Q ss_pred -------EEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 406 -------FRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 406 -------~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+|+++.. .+++++++++++|++++++..
T Consensus 352 ~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 352 ERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp HHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 6666434 789999999999999887654
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=236.50 Aligned_cols=298 Identities=11% Similarity=0.116 Sum_probs=208.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEE
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEI 158 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~ 158 (464)
|.+..+..+++++++++++ .+++++|+|+++++..++.++ +++||+|+++.|+|+.+...+... |+++
T Consensus 35 ~~~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~ 103 (393)
T 1mdo_A 35 ITTGPKNQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLL-GANP 103 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEE
T ss_pred cCCChHHHHHHHHHHHHhC----------CCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHC-CCEE
Confidence 3344567899999999985 247999999999999999999 899999999999999998888776 9999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc-ccC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT-VFD 237 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~-~~~ 237 (464)
+.+++++ +++.+|++++++.+++ ++++|+++ ||||...+ +++|.++|+++|+++|+||+|+.. .+.
T Consensus 104 ~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~ 170 (393)
T 1mdo_A 104 VMVDVDR-DTLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYK 170 (393)
T ss_dssp EEECBCT-TTCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEET
T ss_pred EEEeccC-CcCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeEC
Confidence 9999875 3578999999988754 78888776 48999865 778888899999999999999852 232
Q ss_pred CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC--------------
Q 037587 238 SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG-------------- 303 (464)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~-------------- 303 (464)
+. . + . . .++++.||||..+++|.|+||++++++.+.+.+......+
T Consensus 171 ~~-----~---~-~---------~--~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (393)
T 1mdo_A 171 GR-----H---I-G---------A--RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRA 230 (393)
T ss_dssp TE-----E---T-T---------S--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC----------
T ss_pred Ce-----e---c-C---------C--CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhccccc
Confidence 11 1 1 0 1 5678899994434455699999997566655554432211
Q ss_pred ------------CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-C-----CccEEEEEec
Q 037587 304 ------------LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-S-----NAGLFCWVDM 365 (464)
Q Consensus 304 ------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~-----~~g~f~~~~l 365 (464)
..+.+...++...+.. +++..+..++.++++.+.|.+.++++.. + .+++++|+.+
T Consensus 231 ~~~~~~~~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~ 303 (393)
T 1mdo_A 231 PQAEVLAPGYKYNLPDLNAAIALAQLQK-------LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRV 303 (393)
T ss_dssp -CCEESSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEEC
T ss_pred ccccccccCccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEe
Confidence 1233333333333322 3334444455677788888887766542 2 3456789998
Q ss_pred CcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC--------------CC-----CCCeEEEEeec-CCHHHHHHHHHHH
Q 037587 366 RHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH--------------CN-----EPGWFRICFAN-ITEETLQVALQRI 425 (464)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~--------------~~-----~~~~~Ris~~~-~~~e~l~~~l~~l 425 (464)
+...... ...++...+. ++||.+++|..+. .. ..+++||+++. .++++++.++++|
T Consensus 304 ~~~~~~~---~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l 379 (393)
T 1mdo_A 304 DEARCGI---TRDALMASLK-TKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITAL 379 (393)
T ss_dssp CHHHHSS---CHHHHHHHHH-HTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred ccccccc---CHHHHHHHHH-hCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHH
Confidence 7310000 1224666664 6799999886541 00 13479999985 6899999999999
Q ss_pred HHHHHhh
Q 037587 426 KVFAQSC 432 (464)
Q Consensus 426 ~~~l~~~ 432 (464)
+++++.+
T Consensus 380 ~~~~~~~ 386 (393)
T 1mdo_A 380 HQIAGQG 386 (393)
T ss_dssp HHHHC--
T ss_pred HHHHhcC
Confidence 9987654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=239.92 Aligned_cols=283 Identities=14% Similarity=0.162 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCCh-HHHHHHHHHHhcCC---CCeEEEcCCCCCChhhhcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGS-TAANETLMFCLADP---GDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~-~~al~~~~~~l~~~---gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~ 162 (464)
.++++.+++++ | .. ++++|++|+|+ ++++..++.+++.+ ||.|+++.++|... ..+... | +++.++
T Consensus 51 ~~l~~~la~~~----g--~~-~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~-g-~~~~v~ 120 (360)
T 1w23_A 51 EQAQNLLRELL----Q--IP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLL-G-ETHIAA 120 (360)
T ss_dssp HHHHHHHHHHH----T--CC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTT-S-EEEEEE
T ss_pred HHHHHHHHHHh----C--CC-CCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHh-C-CeEEee
Confidence 34555555555 3 21 35799999999 99999999998865 56777777777532 334545 9 999999
Q ss_pred cCCCCCcccCHHHHHH-HHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 163 CSSSNGFRITISALEN-AYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~-~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+++++++ +|++++++ .+. +++++|++++|+||||.+++ ++ ++++|+++|+||+|+.+ ..
T Consensus 121 ~~~~~~~-~d~~~l~~~~i~------~~~k~v~~~~~~nptG~~~~--~i------~~~~~~~li~D~a~~~~---~~-- 180 (360)
T 1w23_A 121 STKANSY-QSIPDFSEFQLN------ENDAYLHITSNNTIYGTQYQ--NF------PEINHAPLIADMSSDIL---SR-- 180 (360)
T ss_dssp ECGGGTS-CSCCCGGGCCCC------TTEEEEEEESEETTTTEECS--SC------CCCCSSCEEEECTTTTT---SS--
T ss_pred cccccCc-CCccchHhhccC------CCCCEEEEeCCCCCcceecc--cc------cccCCceEEEechhhcC---CC--
Confidence 8753333 68888877 653 37999999999999999987 32 23799999999999853 12
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--------------ccCCCCh
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--------------SFGLVSS 307 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--------------~~~~~s~ 307 (464)
+ .++.. . .+++.|+||.+|++| +||++++++ +.+.+.... .+.+.+.
T Consensus 181 ~-~~~~~-------------~--di~~~s~sK~~~~~G--~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (360)
T 1w23_A 181 P-LKVNQ-------------F--GMIYAGAQKNLGPSG--VTVVIVKKD-LLNTKVEQVPTMLQYATHIKSDSLYNTPPT 241 (360)
T ss_dssp C-CCGGG-------------C--SEEEEETTTTTSCTT--CEEEEEEHH-HHCSCCTTCCGGGCHHHHHHTTTCSSCCCH
T ss_pred C-cCccc-------------C--CEEEEEcccccCCCC--cEEEEEcHH-HHhhcccCCcchhhhhhhhhccCCCCCCCH
Confidence 1 12111 1 267899999999777 899999654 333222211 1133455
Q ss_pred HHHHHHHHHcCCchhhHH-HHHHHHHHHHHHHHHHHHHHHhCC-C-eee--cC-CccEEEEEecCcccccCChhHHHHHH
Q 037587 308 QTQYLLSRMLSDKKFTCN-YMKENRKRLRKRKEMLVSGLKVAG-I-RCL--KS-NAGLFCWVDMRHLLVSNTFEAEKELW 381 (464)
Q Consensus 308 ~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g-~-~~~--~~-~~g~f~~~~l~~~~~~~~~~~~~~l~ 381 (464)
..+.++..+++... .. ++++.++.++++++++.+.|++++ + .+. +. .+++++|++++.. ....+++
T Consensus 242 ~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 313 (360)
T 1w23_A 242 FSIYMLRNVLDWIK--DLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------ELNQQFL 313 (360)
T ss_dssp HHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH------HHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCC------ccHHHHH
Confidence 56666666554211 11 467778888899999999999875 5 543 22 3566899998742 1223466
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 382 KKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 382 ~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
..+ .++||.++||..+ ++++||+++. .+++++++++++|++++++
T Consensus 314 ~~l-~~~gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 314 AKA-KEQGFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp HHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHCCeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 665 5689999998754 5789999986 5899999999999998765
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=241.21 Aligned_cols=353 Identities=12% Similarity=0.068 Sum_probs=214.7
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+ .++.+.+++.+.. .....|....+..+.++++++++.+..+
T Consensus 37 ~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~-- 101 (448)
T 3dod_A 37 KVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQL-------------GKIAHSTLLGMTNVPATQLAETLIDISP-- 101 (448)
T ss_dssp EEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHH-------------TTCSCCCCSSSEEHHHHHHHHHHHHHSC--
T ss_pred EEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHH-------------HhccCccccccCCHHHHHHHHHHHHhCC--
Confidence 4444456678999876 4444 3466666666542 2222333344567888888888887653
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC----CC----CeEEEcCCCCCChhhhcccCCCc------------EEEEEecC
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD----PG----DAFLLPTPYYPGFDRDLKWRPGV------------EIVPIHCS 164 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~----~g----d~Vlv~~p~y~~~~~~~~~~~g~------------~~~~v~~~ 164 (464)
...++|++|+|+++++..+++++.. +| |.|++.+|+|+++........|. .+..++.+
T Consensus 102 --~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (448)
T 3dod_A 102 --KKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP 179 (448)
T ss_dssp --TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC
T ss_pred --CCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC
Confidence 3567999999999999999998765 44 99999999998765443322121 12233322
Q ss_pred CCCCccc-----------CHHHHHHHHHHHhhcCCceEEEEEeCCC-CCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 165 SSNGFRI-----------TISALENAYQQAQTLNLKVKGVLITNPS-NPLGT-AMTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 165 ~~~~~~~-----------d~~~l~~~i~~~~~~~~~~~~vil~~P~-NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
..|.. |+++|++.++.. ..++++|++..++ |++|. +.+.+.+++|.++|++||+++|+||+|
T Consensus 180 --~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~ 254 (448)
T 3dod_A 180 --YVYRSESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVA 254 (448)
T ss_dssp --CCTTSSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred --ccccCCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccc
Confidence 22222 378888888631 1256665555445 88885 567788999999999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH-------h--cc
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK-------M--SS 301 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~-------~--~~ 301 (464)
.++...+. .+ .. .... .... +.||||+++ +| +|+||++++ +.+.+.+.. . ..
T Consensus 255 ~g~g~~g~--~~-a~-~~~~---------~~~d---i~t~sK~l~-~G~~~ig~v~~~-~~~~~~~~~~~~~~~~~~~~~ 316 (448)
T 3dod_A 255 TGFGRTGK--MF-AC-EHEN---------VQPD---LMAAGKGIT-GGYLPIAVTFAT-EDIYKAFYDDYENLKTFFHGH 316 (448)
T ss_dssp TTTTTTSS--SS-GG-GGGT---------CCCS---EEEECGGGG-TTSSCCEEEEEE-HHHHHTTCSCGGGCCCCCCCC
T ss_pred cCCCcccc--hh-hh-hhcC---------CCCC---EEEeccccc-CCcCceEEEEEC-HHHHHHhhhccccCCcccccC
Confidence 97543333 21 11 1111 1122 347999998 69 599999994 445554433 1 12
Q ss_pred cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-eeecCCccEEEEEecCcccccCC-h--h--
Q 037587 302 FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI-RCLKSNAGLFCWVDMRHLLVSNT-F--E-- 375 (464)
Q Consensus 302 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~~~~g~f~~~~l~~~~~~~~-~--~-- 375 (464)
.+..+++++.++.++|+..+- ++..++.++..+..++.+.+ +..++. ...++. |.|+|+.++....... . .
T Consensus 317 t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 393 (448)
T 3dod_A 317 SYTGNQLGCAVALENLALFES-ENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQL-GFMCGAELVRSKETKEPYPADRR 393 (448)
T ss_dssp TTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEE-TTEEEEEECSBTTTTBCCCGGGC
T ss_pred CCCcCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEee-eEEEEEEEccCcccccccchhhH
Confidence 234678888888888763211 12233444444444444555 544432 223333 4588888865322110 0 0
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 376 AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
...+++..++ ++||.+.|+ .+++||+++. .+++++++++++|++++++.
T Consensus 394 ~~~~~~~~l~-~~Gv~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 394 IGYKVSLKMR-ELGMLTRPL-------GDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp HHHHHHHHHH-HTTEECCEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCcEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0235667776 569999886 2689997664 68999999999999998764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=238.34 Aligned_cols=344 Identities=11% Similarity=0.054 Sum_probs=213.1
Q ss_pred CCCCCCCCceEEeeccc--cccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAE--NQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||++.+. |++. ++.+.+++.+.. .....|.. ..+++.++++++.+.++
T Consensus 45 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~---~~~~~~~la~~l~~~~~-- 106 (427)
T 3fq8_A 45 YAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM-------------EKGTSFGA---PCALENVLAEMVNDAVP-- 106 (427)
T ss_dssp EEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------TTCSCCSS---CCHHHHHHHHHHHHHST--
T ss_pred EEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHH-------------HhCCCcCC---CCHHHHHHHHHHHHhCC--
Confidence 33344556789999875 5553 566777666542 12222322 35677777777776543
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcE-------------------EEEEec
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVE-------------------IVPIHC 163 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~-------------------~~~v~~ 163 (464)
.+++|++|+|+++++..+++... ..++.|++.+|+|+++...+....|.. ++.++.
T Consensus 107 ---~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
T 3fq8_A 107 ---SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY 183 (427)
T ss_dssp ---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET
T ss_pred ---CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC
Confidence 57899999999999999995431 235789999999987654433221221 222222
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCC-HHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMT-HQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s-~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
+ |+++|++.+++. ..++++|+++.++|++|.+.+ .+.+++|.++|++||+++|+||+|.++ ..+. .
T Consensus 184 ~-------d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~--~ 250 (427)
T 3fq8_A 184 N-------DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY--G 250 (427)
T ss_dssp T-------CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT--T
T ss_pred C-------CHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc--c
Confidence 1 789999988651 225666666555777887665 555999999999999999999999975 3222 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-----cccCCCChHHHHHHHHHc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-----SSFGLVSSQTQYLLSRML 317 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-----~~~~~~s~~~q~~~~~~l 317 (464)
....... .... +.||||++| +|+|+||+++ ++.+.+.+... ...++.+++++.++.+++
T Consensus 251 --~~~~~~~---------~~~d---i~t~sK~~~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal 314 (427)
T 3fq8_A 251 --GVQEKFG---------VTPD---LTTLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTL 314 (427)
T ss_dssp --HHHHHTT---------CCCS---EEEECGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHH
T ss_pred --hhhHhcC---------CCCC---hhhhhhhhh-CCcceEEEEE-cHHHHHhhccCCCccccCCCCcCHHHHHHHHHHH
Confidence 1111111 1112 459999999 8999999998 45555544331 122345778888877776
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc-------CChhHHHHHHHHHHHhcCe
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS-------NTFEAEKELWKKIIFEVGL 390 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~-------~~~~~~~~l~~~ll~~~gI 390 (464)
+..+. ++..++.++..+..++.+.+.+...++.......|+|+|++++..... .......+++..++ ++||
T Consensus 315 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gi 392 (427)
T 3fq8_A 315 ELLRQ-PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGI 392 (427)
T ss_dssp HHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTE
T ss_pred HHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHH-HCCc
Confidence 52110 112233333333333344444444454433444567899998653111 11112335666665 6799
Q ss_pred EEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 391 NISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 391 ~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
.++|+.. ..+|+++. .+++++++++++|++++++
T Consensus 393 ~v~~~~~------~r~~~~~~-~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 393 YLAPSQF------EAGFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp ECCSSTT------SCEECCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCC------CCEEeeCc-CCHHHHHHHHHHHHHHHHh
Confidence 9998752 24555544 5899999999999999875
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=237.89 Aligned_cols=345 Identities=13% Similarity=0.092 Sum_probs=215.4
Q ss_pred CCCCCCCCceEEeeccc--cccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAE--NQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||++.+. |++. +|.+.+++.+.... .....|+ .....+|++++++++.
T Consensus 46 ~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~-----------~~~~~~~-~~~~~~l~~~la~~~~------ 107 (429)
T 3k28_A 46 KVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAER-----------GTSFGAP-TEIENKLAKLVIERVP------ 107 (429)
T ss_dssp EEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHH-----------CSCCSSC-CHHHHHHHHHHHHHST------
T ss_pred EEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhh-----------CcCcCCC-CHHHHHHHHHHHHhCC------
Confidence 33344566789999874 5553 56777776664221 1112233 2344677777777652
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcc------------
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFR------------ 170 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~------------ 170 (464)
.+++|++|+|+++++..+++.+.. +++.|++.+|+|+++...+....|..+..+......++.
T Consensus 108 ---~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T 3k28_A 108 ---SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAY 184 (429)
T ss_dssp ---TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEET
T ss_pred ---CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCC
Confidence 468999999999999999987654 568999999999876554433323322222221111111
Q ss_pred cCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhh
Q 037587 171 ITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIME 248 (464)
Q Consensus 171 ~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~ 248 (464)
-|++++++.+++. ..++++ ++++| +|++|.+. +.+.+++|.++|++||+++|+||+|.++ ..+. .....
T Consensus 185 ~d~~~le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~----~~~~~ 255 (429)
T 3k28_A 185 NDLESVKYAFEQF---GDDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY----NCGQG 255 (429)
T ss_dssp TCHHHHHHHHHHH---GGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST----THHHH
T ss_pred CCHHHHHHHHHhC---CCCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc----chHHH
Confidence 1789999988752 124554 55556 55566555 6778999999999999999999999875 3222 11111
Q ss_pred hhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-----cccCCCChHHHHHHHHHcCCchhh
Q 037587 249 AVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-----SSFGLVSSQTQYLLSRMLSDKKFT 323 (464)
Q Consensus 249 l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~ 323 (464)
... .... +.||||++| +|+|+||++++ +.+.+.+... ...++.+++++.++.++++..+
T Consensus 256 ~~~---------~~~d---i~t~sK~~~-~G~~iG~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-- 319 (429)
T 3k28_A 256 YYG---------VTPD---LTCLGKVIG-GGLPVGAYGGK-AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-- 319 (429)
T ss_dssp HHT---------CCCS---EEEECGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--
T ss_pred HhC---------CCCc---eehhhhhhc-CCCCeEEEEEc-HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--
Confidence 211 1122 348999998 69999999994 4454444331 2234578889999888887542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCC-eeecCCccEEEEEecCcccc-------cCChhHHHHHHHHHHHhcCeE
Q 037587 324 CNYMKENRKRLRKRKEMLVSGLKV----AGI-RCLKSNAGLFCWVDMRHLLV-------SNTFEAEKELWKKIIFEVGLN 391 (464)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~----~g~-~~~~~~~g~f~~~~l~~~~~-------~~~~~~~~~l~~~ll~~~gI~ 391 (464)
++.++.++++++++.+.|++ ++. ...++.+ .|+++.+..... ........+++..++ ++||.
T Consensus 320 ----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~ 393 (429)
T 3k28_A 320 ----PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAG-SMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVF 393 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEET-TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEE
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeec-cEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeE
Confidence 23344444555555555544 333 3344445 477777743210 011122345666665 67999
Q ss_pred EeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 392 ISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 392 v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
++|+. .+++|+++. .+++++++++++|++++++.
T Consensus 394 v~~~~------~~~~r~~~~-~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 394 LPPSQ------FEGLFLSTV-HSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp CCSST------TSCBCCCTT-CCHHHHHHHHHHHHHHHHTC
T ss_pred EecCC------CCCEEEECC-CCHHHHHHHHHHHHHHHHHH
Confidence 99873 346888765 59999999999999998765
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-28 Score=238.40 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=201.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCC-c-EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPN-K-LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~-~-i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~v 161 (464)
..++++++.+.+.+.+| ++++ + +++|+|+++++..++.+++++||+|+++.+.+... ...++.. | +++.+
T Consensus 47 ~~~~~~~~~~~la~~~g----~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g-~~~~v 120 (362)
T 2c0r_A 47 YEAVHNEAQARLLALLG----NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLI-G-DTHVA 120 (362)
T ss_dssp HHHHHHHHHHHHHHHTT----CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHH-S-CEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHh-C-CeEEE
Confidence 35567777777777665 4553 6 56789999999999999999999999887764332 2444555 8 89888
Q ss_pred ecCCC--CCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 162 HCSSS--NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 162 ~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
+++.+ .++.+|+++++ +. +++++|++++|+||||.+++ ++++| +|+++|+|++|... ..
T Consensus 121 ~~~~~~~~~~~~~~~~~~--i~------~~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~---~~ 181 (362)
T 2c0r_A 121 ASSEASNYMTLPKLQEIQ--LQ------DNAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDIL---SR 181 (362)
T ss_dssp EECGGGTTCSCCCGGGCC--CC------TTEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTT---SS
T ss_pred ecccccccccCCCHHHcc--cC------CCcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhcc---CC
Confidence 87632 22334655543 32 37999999999999999755 34444 79999999999842 22
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--------------hcccCCC
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--------------MSSFGLV 305 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--------------~~~~~~~ 305 (464)
+ .+ + . +..+++.|+||++|++| +||++++++.+ +.+.. ....+++
T Consensus 182 --~-~~---~-~-----------~~d~~~~s~~K~~g~~G--~G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~t~ 240 (362)
T 2c0r_A 182 --P-FD---L-N-----------QFGLVYAGAQKNLGPSG--VTVVIVREDLV-AESPKHLPTMLRYDTYVKNNSLYNTP 240 (362)
T ss_dssp --C-CC---G-G-----------GCSEEEEETTTTTCCSS--CEEEEEEGGGS-SSCCTTSCGGGCHHHHHHTTTCSSCC
T ss_pred --c-cc---h-h-----------HCcEEEEeccccccCcC--cEEEEEcHHHH-hhccccCchHHhHHHHhhccCcCCCc
Confidence 1 12 1 1 11367789999999888 89999865432 22211 0223456
Q ss_pred ChHHHHHHHHHcCCchhhHH-HHHHHHHHHHHHHHHHHHHHHhCC-C-eeecC---CccEEEEEecCcccccCChhHHHH
Q 037587 306 SSQTQYLLSRMLSDKKFTCN-YMKENRKRLRKRKEMLVSGLKVAG-I-RCLKS---NAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 306 s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g-~-~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
+.+.|.++..+++... .. .+++.++.++++++++.+.|+++| + ++..+ .++.++++.++.. ....+
T Consensus 241 ~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 312 (362)
T 2c0r_A 241 PSFGIYMVNEVLKWIE--ERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE------ELEKE 312 (362)
T ss_dssp CHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCH------HHHHH
T ss_pred hHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCc------chHHH
Confidence 7788888887776321 11 467788889999999999999987 6 66421 2344678888632 12335
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
++..| .++||.+.||..| .+++|||++. .++++++++++.|+++++++
T Consensus 313 ~~~~L-~~~gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 313 FVKAS-EQEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp HHHHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHCCCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 66665 5779999888765 3579999986 57999999999999998765
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=234.44 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=202.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccC
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWR 153 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~ 153 (464)
..|. ..|.+ +++++++++.+.+| . +++++++|+++++..++. ++++||.|++++|+|+.+... +...
T Consensus 125 ~~Y~-~~g~~-~~~~l~~~la~~~g----~--~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~ 195 (464)
T 1ibj_A 125 YDYT-RSGNP-TRDALESLLAKLDK----A--DRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRS 195 (464)
T ss_dssp CSBT-TTCCH-HHHHHHHHHHHHHT----C--SEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGG
T ss_pred cccc-CCCCH-HHHHHHHHHHHHhC----C--CeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHc
Confidence 3465 34544 78888888887765 2 377777888899998875 789999999999999988653 4445
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
|++++.++++ |++++++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|..
T Consensus 196 -G~~v~~v~~~-------d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~ 258 (464)
T 1ibj_A 196 -GVVVKRVNTT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMS 258 (464)
T ss_dssp -TCEEEEECTT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTC
T ss_pred -CCEEEEeCCC-------CHHHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcc
Confidence 9999998863 78899887753 7999999999999999985 78889999999999999999974
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCC-CccEEEEEEecCHHHHHHHHHhcc--cCCCChHHH
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM-PGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQ 310 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~-~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q 310 (464)
..+ +.. ..+ ++++++.|+||.++. +|+|+||++++++.+.+.+..... .+.++++.|
T Consensus 259 g~~------~~~-~~~-------------~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~ 318 (464)
T 1ibj_A 259 PVL------SRP-LEL-------------GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318 (464)
T ss_dssp TTT------CCG-GGT-------------TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHH
T ss_pred ccc------CCh-hhc-------------CCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHH
Confidence 211 111 111 567889999999864 489999999976666665554432 234678888
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH----------HHHHhC-CCeeecCC---ccEEEEEecCcccccCChhH
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLV----------SGLKVA-GIRCLKSN---AGLFCWVDMRHLLVSNTFEA 376 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----------~~l~~~-g~~~~~~~---~g~f~~~~l~~~~~~~~~~~ 376 (464)
.++...++.... .++..........+++. +.|+++ ++.+.+++ .|.+++++++. ...
T Consensus 319 ~a~~~al~~~~~---r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~------~~~ 389 (464)
T 1ibj_A 319 WLCLRGIKTMAL---RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS------VAL 389 (464)
T ss_dssp HHHHHHHTTHHH---HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC------HHH
T ss_pred HHHHhchhhHHH---HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC------HHH
Confidence 888888775432 12222222222222222 122222 34444443 23478888742 112
Q ss_pred HHHHHHHHHHhcCeEEeCCC------------CCCC---------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 377 EKELWKKIIFEVGLNISPGS------------SCHC---------NEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 377 ~~~l~~~ll~~~gI~v~pg~------------~f~~---------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
...++..+ +..||.+++|. .+.. ..++++||+++. |++++++++|++++++
T Consensus 390 ~~~~~~~L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 390 SKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 461 (464)
T ss_dssp HHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc-CcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHhh
Confidence 22344444 35799998885 1211 125789999994 8899999999998864
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=244.86 Aligned_cols=302 Identities=15% Similarity=0.122 Sum_probs=218.6
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCC-----eEEEcCCCCCChhhhcccC
Q 037587 83 YHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL----ADPGD-----AFLLPTPYYPGFDRDLKWR 153 (464)
Q Consensus 83 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd-----~Vlv~~p~y~~~~~~~~~~ 153 (464)
..|..++++++++++.+.+| ++. .+++++|+++++..++.++ .++|| +|+++.|+|+.+...+...
T Consensus 102 ~~g~~~l~~~l~~~la~~~g----~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~ 176 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTG----MDA-ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA 176 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----CSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHC----CCc-eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHC
Confidence 44667888888888888776 332 4668899999999865554 35787 9999999999888888776
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
|++++.+++++ ++.+|+++|++.+.+ ++++|++++| ||||.+. +++++|+++|+++|+++|+||+|..
T Consensus 177 -G~~vv~v~~~~--~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~ 244 (474)
T 1wyu_B 177 -GYQVREIPSGP--EGEVDLEALKRELGP------HVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLN 244 (474)
T ss_dssp -TCEEEEECBCT--TSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGG
T ss_pred -CCEEEEecCCC--CCCcCHHHHHHhhCC------CceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhh
Confidence 99999999863 578999999998854 7899999998 6899873 4688999999999999999999976
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC-c---cEEEEEEecCHHHHHHHH-Hh---------
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP-G---FRVGMIYSNNERVVSAAT-KM--------- 299 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~-G---lRiG~l~~~~~~~~~~~~-~~--------- 299 (464)
..++ . .+...+ +..+++.|+||+|+.+ | +|+||++++++. .+.+. ..
T Consensus 245 ~~~g-~----~~~~~~-------------g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l-~~~l~~~~~~~~g~~~~ 305 (474)
T 1wyu_B 245 AIMG-W----ARPGDM-------------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL-APYLPVPLVERGEEGFY 305 (474)
T ss_dssp GTTT-T----CCHHHH-------------TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGG-GGGCCSCEEEECSSCEE
T ss_pred hhcc-C----CCcccC-------------CCcEEEEeCccccccCCCCCCCCeEEEEEcHHH-HHhCCCCeeeccCCeeE
Confidence 5432 1 122222 3457788999999766 4 699999996643 33222 00
Q ss_pred ------------cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEE-EEEecC
Q 037587 300 ------------SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF-CWVDMR 366 (464)
Q Consensus 300 ------------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f-~~~~l~ 366 (464)
.. .+.+.+.+.++..++.... .+.+++..+.+.++++++.+.|++.|+++..+...+. +|++++
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~aa~~~l~~~g--~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 382 (474)
T 1wyu_B 306 LDFDRPKSIGRVRS-FYGNFLALVRAWAYIRTLG--LEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPP 382 (474)
T ss_dssp EECCCTTCCCCSSS-TTSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCS
T ss_pred ecccCcccCccccc-CcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcC
Confidence 11 1245566776666665322 3457777888888999999999988887633332221 566663
Q ss_pred cccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 367 HLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 367 ~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
.. ....+++..|+ ++||.+ |+..|+....+++||+++. .+++++++++++|++++++
T Consensus 383 ~~------~~~~~l~~~L~-~~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 383 EG------FRALDLAKGLL-ELGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp TT------CCHHHHHHHHH-HTTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred CC------CCHHHHHHHHH-HCCccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 11 11235777776 559985 6666643346789999986 5799999999999999876
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=236.83 Aligned_cols=322 Identities=15% Similarity=0.223 Sum_probs=215.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC----CCCe---EEEcCCCCCChhhhcc
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD----PGDA---FLLPTPYYPGFDRDLK 151 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~----~gd~---Vlv~~p~y~~~~~~~~ 151 (464)
.|.+..+..+|+++++++++ .++|++|+|+++++..++.+++. +||. |+++.+.|..+...+.
T Consensus 71 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~ 140 (467)
T 1ax4_A 71 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 140 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHcC----------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh
Confidence 57666678999999999984 26899999999999999999988 9998 9998777666666666
Q ss_pred cCCCcEEEEEecCC----C----CCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHHhhCC
Q 037587 152 WRPGVEIVPIHCSS----S----NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL-GTAMTHQELNHLINFSKSKR 222 (464)
Q Consensus 152 ~~~g~~~~~v~~~~----~----~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPt-G~~~s~~~l~~i~~~~~~~~ 222 (464)
.. |.+++.++.+. . .++.+|+++|++++++.. ..++++|++++||||| |.+++.+++++|+++|++||
T Consensus 141 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~g 217 (467)
T 1ax4_A 141 LN-GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217 (467)
T ss_dssp HT-TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred cc-CCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcC
Confidence 66 88888776431 0 134689999999997521 1268999999999999 89999999999999999999
Q ss_pred eEEEEeccccc--c--------ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC-ccEEEEEEecCH-
Q 037587 223 IHIVSDEIYSG--T--------VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP-GFRVGMIYSNNE- 290 (464)
Q Consensus 223 ~~lI~Deay~~--~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~-GlRiG~l~~~~~- 290 (464)
+++|+||++.. . .+.+ .++..+.+++. ...+ +++.|+||.+|++ | ||++++++
T Consensus 218 i~li~De~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~d--~~~~s~sK~~g~~~G---g~~~~~d~~ 282 (467)
T 1ax4_A 218 IFVVMDSARFCENAYFIKARDPKYKN-----ATIKEVIFDMY-----KYAD--ALTMSAKKDPLLNIG---GLVAIRDNE 282 (467)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTT-----CCHHHHHHHHG-----GGCS--EEEEETTSTTCCSSC---EEEEESSCH
T ss_pred CEEEEEchhhhhcchhccccccccCC-----Cchhhhhhhhc-----cccc--eEEEeccccCCCCcc---eEEEeCCHH
Confidence 99999998642 1 1211 12222221000 0012 4568999999876 5 77877633
Q ss_pred HHHHHHHHhc-------ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEE
Q 037587 291 RVVSAATKMS-------SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWV 363 (464)
Q Consensus 291 ~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~ 363 (464)
.+.+.+.... .+...+...+.++...+....- .+.+++ ..++++.+.+.|.+.|+++..+.+|+++|+
T Consensus 283 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~----~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 357 (467)
T 1ax4_A 283 EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYLHY----RIGQVKYLGDRLREAGIPIQYPTGGHAVFV 357 (467)
T ss_dssp HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHHHH----HHHHHHHHHHHHHHTTCCBCSSCCSSEEEE
T ss_pred HHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh-hhHHHH----HHHHHHHHHHHHHhCCCCcccCCCceEEEE
Confidence 4444333221 1222333333333323321100 112222 224557788888777888877788899999
Q ss_pred ecCcc---cccCChhHHHHHHHHHHHhcCeEEeC-CCCC-CC---------CCCCeEEEEeec--CCHHHHHHHHHHHHH
Q 037587 364 DMRHL---LVSNTFEAEKELWKKIIFEVGLNISP-GSSC-HC---------NEPGWFRICFAN--ITEETLQVALQRIKV 427 (464)
Q Consensus 364 ~l~~~---~~~~~~~~~~~l~~~ll~~~gI~v~p-g~~f-~~---------~~~~~~Ris~~~--~~~e~l~~~l~~l~~ 427 (464)
++... ..... ....+++..|+.++||.+.| |..| +. ...+++||+++. .+++++++++++|++
T Consensus 358 ~~~~~~~~~~~~~-~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~ 436 (467)
T 1ax4_A 358 DCKKLVPQIPGDQ-FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIG 436 (467)
T ss_dssp ESTTTCTTSCGGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHT
T ss_pred ehhhhccccccCC-CCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHH
Confidence 94221 00001 12346777775788999999 5431 11 113789999983 689999999999999
Q ss_pred HHHhhCc
Q 037587 428 FAQSCNP 434 (464)
Q Consensus 428 ~l~~~~~ 434 (464)
++++.+.
T Consensus 437 ~~~~~~~ 443 (467)
T 1ax4_A 437 LKEKFAT 443 (467)
T ss_dssp THHHHTT
T ss_pred HHHhhhc
Confidence 9987653
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=243.21 Aligned_cols=310 Identities=13% Similarity=0.136 Sum_probs=222.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE--EEeCChHHHHHHHHHHhcCCC--------CeEEEcCCCCCChhhh
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL--VLTAGSTAANETLMFCLADPG--------DAFLLPTPYYPGFDRD 149 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i--~it~G~~~al~~~~~~l~~~g--------d~Vlv~~p~y~~~~~~ 149 (464)
|..+.+..++++.+++++.+.+| .+.+++++ ++|+|+++++..++.++..+| |+|+++.|+|..+...
T Consensus 131 ~~~~p~~~~le~~l~~~la~~~g--~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~ 208 (514)
T 3mad_A 131 PDLWPSTAKFEAEVVAMTAHMLG--GDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA 208 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--GGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHcC--CCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH
Confidence 33334556788888888877766 22334788 999999999999999998776 9999999999999988
Q ss_pred cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEec
Q 037587 150 LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDE 229 (464)
Q Consensus 150 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~De 229 (464)
+... |++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||
T Consensus 209 ~~~~-G~~v~~v~~~~--~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 209 AQYF-GIKLVRTPLDA--DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp HHHH-TCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHHc-CCeeEEeeeCC--CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 8877 99999999874 678999999998864 7899999999999999977 6778889999999999999
Q ss_pred cccccccC---CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc-----
Q 037587 230 IYSGTVFD---SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS----- 301 (464)
Q Consensus 230 ay~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~----- 301 (464)
+|+++.+. ..+.....+... ..+..+++.|++|.++ +|.++|+++++++.+.........
T Consensus 277 a~~~~~~~~~~~~g~~~~~~~~~-----------~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 344 (514)
T 3mad_A 277 CLGGFILPWAERLGYPVPPFDFR-----------LEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGG 344 (514)
T ss_dssp TTTTTTHHHHHHTTCCCCCCSTT-----------STTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTC
T ss_pred ccccccchhHHhcCCCCCccccc-----------CCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCC
Confidence 99976431 000000111101 2245678899999974 788999999977654432111110
Q ss_pred -------cCCCChH---HHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccc
Q 037587 302 -------FGLVSSQ---TQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLV 370 (464)
Q Consensus 302 -------~~~~s~~---~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~ 370 (464)
.++.+.. .+.++...+. ...+++..+.+.++++++.+.|++. |+++..+..+ ++|+..+..
T Consensus 345 ~~~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~-- 416 (514)
T 3mad_A 345 LYFSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL-- 416 (514)
T ss_dssp SEEESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS--
T ss_pred cccCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC--
Confidence 0112222 2333333332 2345667777788889999999987 8888776666 677765321
Q ss_pred cCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhCc
Q 037587 371 SNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 371 ~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
+..++...|. ++||.+ +|..| ++++|++++. .+++++++++++|++++++.+.
T Consensus 417 -----~~~~l~~~L~-~~Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 417 -----NIYQVMEEMA-GRGWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp -----CHHHHHHHHH-TTTCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHH-hcCCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1224666665 669988 55433 4679999974 4579999999999999987653
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=239.80 Aligned_cols=326 Identities=12% Similarity=0.040 Sum_probs=217.4
Q ss_pred CceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccc-cCCC--CCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 36 SGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELA-LFQD--YHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 36 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~--~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
++.+.|+.+.+..+++.+.+++.+..... . + ..... .|+. .....++++.++++++ +++++|
T Consensus 27 ~~~~yld~~~~~~~~~~v~~a~~~~l~~~-~---~---~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v 91 (416)
T 1qz9_A 27 EGVIYLDGNSLGARPVAALARAQAVIAEE-W---G---NGLIRSWNSAGWRDLSERLGNRLATLIG--------ARDGEV 91 (416)
T ss_dssp TTCEECCTTTSCCCBTTHHHHHHHHHHTC-C---C---CCGGGHHHHTSGGGHHHHHHHHHHTTTT--------CCTTSE
T ss_pred CCeEeecCCCcCCCcHHHHHHHHHHHHHH-H---h---ccCccccchhhHHHHHHHHHHHHHHHcC--------CCcccE
Confidence 46688888877655566666665532100 0 0 00000 1110 1233567777777664 567899
Q ss_pred EEeCChHHHHHHHHHHhc------CCCCeE-EEcCCCCCChhhhcc---cCC--CcEEEEEecCCCCCcccCHHHHHHHH
Q 037587 113 VLTAGSTAANETLMFCLA------DPGDAF-LLPTPYYPGFDRDLK---WRP--GVEIVPIHCSSSNGFRITISALENAY 180 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~------~~gd~V-lv~~p~y~~~~~~~~---~~~--g~~~~~v~~~~~~~~~~d~~~l~~~i 180 (464)
++|+|+++++..++.+++ ++||.| +++.++|+.+...+. ... |++++.++. ++++++.+
T Consensus 92 ~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i 162 (416)
T 1qz9_A 92 VVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAI 162 (416)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHC
T ss_pred EEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHh
Confidence 999999999998888876 899875 454557765443221 112 788888874 57777766
Q ss_pred HHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCC
Q 037587 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260 (464)
Q Consensus 181 ~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (464)
.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ ++.. . .++..+
T Consensus 163 ~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~---~g~~--~-~~~~~~----------- 216 (416)
T 1qz9_A 163 DQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHS---AGAV--P-VDLHQA----------- 216 (416)
T ss_dssp ST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTT---TTTS--C-CCHHHH-----------
T ss_pred CC------CceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEcccc---ccCc--C-CChhhc-----------
Confidence 43 7899999999999999987 6778889999999999999997 3322 1 122222
Q ss_pred CCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHh-------------------------cccCCCChHHHHHHH
Q 037587 261 LWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKM-------------------------SSFGLVSSQTQYLLS 314 (464)
Q Consensus 261 ~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~-------------------------~~~~~~s~~~q~~~~ 314 (464)
+..+++.|+||.++ +|.++ ||++++++.+ +.+... ...++.+...+.++.
T Consensus 217 --~~d~~~~s~~K~l~-~g~~~~g~l~~~~~~~-~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 292 (416)
T 1qz9_A 217 --GADYAIGCTYKYLN-GGPGSQAFVWVSPQLC-DLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVE 292 (416)
T ss_dssp --TCSEEEECSSSTTC-CCTTCCCEEEECTTTT-TTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHH
T ss_pred --CCCEEEecCcccCC-CCCCCeEEEEECHHHH-hccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHH
Confidence 24477899999985 67777 9999965532 222211 112235556666555
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCC----ccEEEEEecCcccccCChhHHHHHHHHHHH
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSN----AGLFCWVDMRHLLVSNTFEAEKELWKKIIF 386 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~----~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~ 386 (464)
++++... .+++++.++.++++++++.+.|.+. |+++..+. .+.++|++++. ..++...|.
T Consensus 293 ~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~l~- 360 (416)
T 1qz9_A 293 CGLDVFA--QTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---------GYAVIQALI- 360 (416)
T ss_dssp HHHHHHT--TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---------HHHHHHHHH-
T ss_pred HHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC---------HHHHHHHHH-
Confidence 5554211 1235667777888888899999886 88887663 24478998863 124666664
Q ss_pred hcCeEEeCCCCCCCCCCCeEEEEee--cCCHHHHHHHHHHHHHHHHhhC
Q 037587 387 EVGLNISPGSSCHCNEPGWFRICFA--NITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 387 ~~gI~v~pg~~f~~~~~~~~Ris~~--~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++||.+... ..+++||+++ ..+++++++++++|++++++..
T Consensus 361 ~~gi~~~~~------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 361 DRGVIGDYR------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp TTTEECEEE------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hCCcEeccC------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence 679997532 3578999997 3689999999999999988654
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=236.49 Aligned_cols=346 Identities=10% Similarity=0.049 Sum_probs=218.3
Q ss_pred CCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCC-CCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 33 HNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDY-HGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 33 ~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
.....+||++.+. +.+ +++.+.+++.+.. .... +... .+..++++.+++.+.+..+ .
T Consensus 47 ~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~-------------~~~~-~~~~~~~~~~~~~~l~~~la~~~~----~ 108 (449)
T 3a8u_X 47 DKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQL-------------STLD-YSPGFQYGHPLSFQLAEKITDLTP----G 108 (449)
T ss_dssp TTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHT-------------TTCS-CCCSSSCCCHHHHHHHHHHHTTSS----T
T ss_pred CCCCEEEECCccHhhccCCCCCHHHHHHHHHHH-------------HhCC-CccccccCCHHHHHHHHHHHHhCC----C
Confidence 3445678987664 444 3466666666542 1111 2111 3445666777777765433 4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCCCChhh-hcccC-------------CCcEEEEEecCC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLAD--------PGDAFLLPTPYYPGFDR-DLKWR-------------PGVEIVPIHCSS 165 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~-~~~~~-------------~g~~~~~v~~~~ 165 (464)
.+++|++|+|+++++..+++++.. +||.|++.+|+|+++.. .+... .|+..++++...
T Consensus 109 ~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~ 188 (449)
T 3a8u_X 109 NLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLA 188 (449)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCG
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccc
Confidence 678999999999999999988764 67999999999987643 22222 133444433211
Q ss_pred CCCc-ccC--------HHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 166 SNGF-RIT--------ISALENAYQQAQTLNLKVKGVLITNP-SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 166 ~~~~-~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
...| .+| +++|++.+++.. .++++ +++++| +||||. ..+.+.+++|.++|+++|+++|+||+|.++
T Consensus 189 ~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~ 265 (449)
T 3a8u_X 189 SNAYSRGMPKEGGIALADELLKLIELHD--ASNIA-AVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGF 265 (449)
T ss_dssp GGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred cCccccCChHHHHHHHHHHHHHHHHhcC--CCCEE-EEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Confidence 1111 145 889998886420 02555 455667 478997 557899999999999999999999999764
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh-----------ccc
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM-----------SSF 302 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~-----------~~~ 302 (464)
...+. . .. ..... ....++ ||||.++ +| +|+||++++ +.+.+.+... ...
T Consensus 266 g~~g~--~-~~-~~~~~---------~~~di~---s~sK~l~-~G~~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~t 327 (449)
T 3a8u_X 266 GRTGS--M-FG-ADSFG---------VTPDLM---CIAKQVT-NGAIPMGAVIAS-TEIYQTFMNQPTPEYAVEFPHGYT 327 (449)
T ss_dssp TTTSS--S-SH-HHHHT---------CCCSEE---EECGGGG-TTSSCCEEEEEE-HHHHHHHHTCSSCTTSCSSCCCCT
T ss_pred cccCc--c-hh-hhhcC---------CCCCEE---EEccccc-CCCCceEEEEEC-HHHHHHhhccCcccccccccccCC
Confidence 33222 1 11 11211 112322 9999998 68 999999985 4555555442 112
Q ss_pred CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-Ce---eecCCccEEEEEecCcccccCChhHHH
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IR---CLKSNAGLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~---~~~~~~g~f~~~~l~~~~~~~~~~~~~ 378 (464)
+..+++++.++.++++..+ + +...+.++++++++.+.|++++ ++ ..++. |+|+|++++....... ....
T Consensus 328 ~~~~~~~~aa~~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~-~~~~ 400 (449)
T 3a8u_X 328 YSAHPVACAAGLAALCLLQ---K--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNF-GLAGAIQIAPRDGDAI-VRPF 400 (449)
T ss_dssp TTTCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEE-TTEEEEEECCBTTBSS-HHHH
T ss_pred CcccHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeee-EEEEEEEEecCccccc-ccHH
Confidence 3457788888777775321 1 1234455566666777776542 22 22333 5689999875321110 0122
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 379 ELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
++...++ ++||.++|+. +++||+++. .+++++++++++|++++++.
T Consensus 401 ~~~~~l~-~~Gv~v~~~g-------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 401 EAGMALW-KAGFYVRFGG-------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp HHHHHHH-HHTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-HCCcEEecCC-------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4667776 5699999861 689999763 69999999999999998753
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=236.32 Aligned_cols=328 Identities=14% Similarity=0.098 Sum_probs=215.7
Q ss_pred CCCceEEeeccccc--c--cHHHHHHHHHhhhhhHHhhhccccccccc-ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 34 NPSGIIQMGLAENQ--L--SFDLLESWLASNQEAVELKRNGESLFREL-ALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 34 ~~~~~i~l~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
+...+|||..+.+. + +++.+.+++.+..+. .... ..|+ .....++++.++++++
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~----------~~~~~~~~~-~~~~~~l~~~la~~~g---------- 132 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDK----------LTLTSRAFY-NNVLGEYEEYITKLFN---------- 132 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTT----------CSCCCTTSE-ESSHHHHHHHHHHHHT----------
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHh----------cCcccCccC-CHHHHHHHHHHHHhcC----------
Confidence 44568999886543 3 346677766654211 0111 1232 1234666666666652
Q ss_pred CCcEEEeCChHHHHHHHHHHhc---------CCC-CeEEEcCCCCCChhh-hcccCCC------------cEEEEEecCC
Q 037587 109 PNKLVLTAGSTAANETLMFCLA---------DPG-DAFLLPTPYYPGFDR-DLKWRPG------------VEIVPIHCSS 165 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~~g------------~~~~~v~~~~ 165 (464)
.++|++++|+++++..++.++. .+| |.|++.+|+|++... .+... | ..++.++.
T Consensus 133 ~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~-g~~~~~~~~~p~~~~v~~~~~-- 209 (439)
T 2oat_A 133 YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSS-TDPTSYDGFGPFMPGFDIIPY-- 209 (439)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTC-CCHHHHTTSCSCCTTEEEECS--
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcC-CChhcccCCCCCCCCeEEeCC--
Confidence 5789999999999999998864 357 899999999987643 33322 3 35556653
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
.|+++|++.++. +++++|+ ++| +|++|. .++.+.+++|.++|+++|+++|+||+|.++...+. .+
T Consensus 210 -----~d~~~le~~l~~-----~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~--~~ 276 (439)
T 2oat_A 210 -----NDLPALERALQD-----PNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WL 276 (439)
T ss_dssp -----SCHHHHHHHTTS-----TTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SS
T ss_pred -----CCHHHHHHHhCC-----CCEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc--ch
Confidence 278999888741 2666555 556 577896 56889999999999999999999999976433222 11
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCCc
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~ 320 (464)
. .+... ....++ ||||.+| +| +|+||+++++ .+.+.+... ...+..+++++.++.++++..
T Consensus 277 -~-~~~~~---------~~~Di~---t~sK~l~-~G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~ 340 (439)
T 2oat_A 277 -A-VDYEN---------VRPDIV---LLGKALS-GGLYPVSAVLCDD-DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL 340 (439)
T ss_dssp -G-GGGGT---------CCCSEE---EECGGGG-TTSSCCEEEEECH-HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH
T ss_pred -h-HHHhC---------CCCcEE---Eeccccc-CCCCCeEEEEECH-HHHhccCCCCcccCCCcCHHHHHHHHHHHHHH
Confidence 1 11111 112222 9999999 79 9999999954 444433321 222346778888777776532
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee---ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC---LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~ 397 (464)
+ + +...+.++++++++.+.|+++++++ .++. |.|+|++++.... ....+++..++ ++||.+.|+
T Consensus 341 ~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-g~~~~v~l~~~~~----~~~~~l~~~l~-~~Gv~v~~~-- 407 (439)
T 2oat_A 341 E---E--ENLAENADKLGIILRNELMKLPSDVVTAVRGK-GLLNAIVIKETKD----WDAWKVCLRLR-DNGLLAKPT-- 407 (439)
T ss_dssp H---H--TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEE-TTEEEEEECCCSS----CCHHHHHHHHH-HTTEECCBS--
T ss_pred h---h--hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEee-eeEEEEEEecCcc----HHHHHHHHHHH-HCCeEEecC--
Confidence 1 1 1345566777788888888765442 2334 4588898874310 01235777776 579999984
Q ss_pred CCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 398 CHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 398 f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+.+++||+++. .+++++++++++|++++++
T Consensus 408 ----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 408 ----HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp ----SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ----CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 25789998865 6899999999999998864
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=239.36 Aligned_cols=342 Identities=11% Similarity=0.039 Sum_probs=215.7
Q ss_pred CCC--ceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 037587 34 NPS--GIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKF 107 (464)
Q Consensus 34 ~~~--~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 107 (464)
+.. .+||+..+ .|.+. +|.+.+++.+... ....+....+..+...++++.+.+..+ .
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~-------------~~~~~~~~~~~~~~~~~L~e~la~~~~----~ 133 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLR-------------VMNHVMFGGLTHEPAARLAKLLVDITP----A 133 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHH-------------HCSCCCSSSEECHHHHHHHHHHHHHSS----T
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHH-------------hccCccccccCCHHHHHHHHHHHHhCC----C
Confidence 455 78999876 55664 5667777666422 111111111223445555555554433 4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCCCChhhhcccCCC-------------cEEEEEecCCC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLAD-------PG-DAFLLPTPYYPGFDRDLKWRPG-------------VEIVPIHCSSS 166 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~~g-------------~~~~~v~~~~~ 166 (464)
..++|++|+|+++++..+++++.. +| +.|++.+++|.++...+....+ ..+..++.+..
T Consensus 134 ~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 213 (457)
T 3tfu_A 134 GLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR 213 (457)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS
T ss_pred CcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc
Confidence 567999999999999999988764 55 5899999999876533322201 12222333221
Q ss_pred CCcccCHHHHHHHHHHHhhcCCceEEEEEeC-CCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 167 NGFRITISALENAYQQAQTLNLKVKGVLITN-PSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 167 ~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~-P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
.....|+++|++.+++. ..++++|++.. ++||+|.++ +.+.+++|.++|+++|+++|+||+|.++...+. . .
T Consensus 214 ~~~~~d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~--~-~ 287 (457)
T 3tfu_A 214 DYDPAYSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA--L-F 287 (457)
T ss_dssp SCCHHHHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S-S
T ss_pred ccCHHHHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc--h-h
Confidence 11124788899888742 23677777776 789999876 777899999999999999999999987533332 1 1
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH-------hcccCCCChHHHHHHHHH
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK-------MSSFGLVSSQTQYLLSRM 316 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~ 316 (464)
. .+... ..++++ ||||.++ .| +|+||++++ +.+.+.+.. ....+..++++++++.++
T Consensus 288 a-~~~~~---------~~pdii---t~sK~l~-gG~~~lG~v~~~-~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aa 352 (457)
T 3tfu_A 288 A-ADHAG---------VSPDIM---CVGKALT-GGYLSLAATLCT-ADVAHTISAGAAGALMHGPTFMANPLACAVSVAS 352 (457)
T ss_dssp T-HHHHT---------CCCSEE---EECGGGG-TTSSCCEEEEEE-HHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHH
T ss_pred H-hHhcC---------CCceEE---EEChhhh-CCCcceEEEEEc-HHHHHHhhccCCCceeEecCCCcCHHHHHHHHHH
Confidence 1 11211 113333 9999987 56 799999995 455555531 112234678888888777
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEE
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v 392 (464)
|+..+- +...+.+++..+++.+.|+++ ++...++.| +|++++++.... ..+++..++ ++||.+
T Consensus 353 L~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G-~~~~i~l~~~~~------~~~~~~~l~-~~Gv~v 419 (457)
T 3tfu_A 353 VELLLG-----QDWRTRITELAAGLTAGLDTARALPAVTDVRVCG-AIGVIECDRPVD------LAVATPAAL-DRGVWL 419 (457)
T ss_dssp HHHHHT-----SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECS-SCEEEEESSCCC------HHHHHHHHH-HTTEEC
T ss_pred HHHHhh-----hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCC-eEEEEEECCccc------HHHHHHHHH-HCCeEE
Confidence 652110 112233334445555555543 344444455 588888875321 235677776 569999
Q ss_pred eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 393 SPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 393 ~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+|+ .+++||+++. .+++++++++++|++++++..
T Consensus 420 ~~~-------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 420 RPF-------RNLVYAMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp CCB-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred Eec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 874 2589999765 689999999999999998654
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-27 Score=238.30 Aligned_cols=344 Identities=15% Similarity=0.112 Sum_probs=225.1
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC----cE
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN----KL 112 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~----~i 112 (464)
+.|+|..++|+.+ +.+.+++.+..... . .++ ......|....+..++++.+.+++.+.+| ++++ +|
T Consensus 45 ~~i~L~a~e~~~~-~~V~eA~~~~l~~~-~-~~g---~p~~~~y~~~~~~~~le~~~~~~~a~~~g----~~~~~~~~~V 114 (483)
T 1rv3_A 45 VGLELIASENFAS-RAVLEALGSCLNNK-Y-SLG---YPGQRYYGGTEHIDELETLCQKRALQAYG----LDPQCWGVNV 114 (483)
T ss_dssp SSEECCTTCCCCC-HHHHHHHTSGGGTC-C-CCE---ETTEESSSCCHHHHHHHHHHHHHHHHHTT----CCTTTEEEEC
T ss_pred cCeEEEcCCCCCC-HHHHHHHHHHHhcc-C-ccc---CCCccccCcchhHHHHHHHHHHHHHHHhC----CCcccCceEE
Confidence 4699988888754 44555554431100 0 000 00001122223346778777788877766 4553 48
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc--------ccCCC--cEEEEEecCCCCCcccCHHHHHHHHHH
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL--------KWRPG--VEIVPIHCSSSNGFRITISALENAYQQ 182 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~i~~ 182 (464)
++++|+ +++..++.++++|||+|++++|+|.++.... ... | .+++++++++ .++.+|+++|++.+.+
T Consensus 115 ~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~-G~~~~~v~~~~~~-~~~~iD~d~le~~i~~ 191 (483)
T 1rv3_A 115 QPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISAT-SIFFESMAYKVNP-DTGYIDYDRLEENARL 191 (483)
T ss_dssp CCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHH-HHHSEEEEECBCT-TTCSBCHHHHHHHHHH
T ss_pred EECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccc-cceEEEEECcccc-CCCcCCHHHHHHHHhh
Confidence 888888 8888888999999999999999998775422 222 4 4555555553 3578999999999973
Q ss_pred HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc-cccCCCCCCccchhhhhhccCcCCCCCC
Q 037587 183 AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG-TVFDSPSSSFISIMEAVMDRNIDESDDL 261 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (464)
. ++++|++ +++||+ .+++ +++|.++|+++|+++|+|++|.. +.+.+. . .+.. +
T Consensus 192 ~-----~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~--~-~~p~---~---------- 245 (483)
T 1rv3_A 192 F-----HPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV--V-PSPF---E---------- 245 (483)
T ss_dssp H-----CCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--S-CCGG---G----------
T ss_pred c-----CCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCC--C-CCCC---C----------
Confidence 2 7898888 899998 7766 77888899999999999999863 222222 1 1111 1
Q ss_pred CCcEEEEcCCCcCCCCCccEEEEEEecCH--------------HHHHHHHHh-cc--cCCCChHHHHHHHHHcCCchhhH
Q 037587 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNE--------------RVVSAATKM-SS--FGLVSSQTQYLLSRMLSDKKFTC 324 (464)
Q Consensus 262 ~~~vi~l~S~SK~~g~~GlRiG~l~~~~~--------------~~~~~~~~~-~~--~~~~s~~~q~~~~~~l~~~~~~~ 324 (464)
...+++.|+||++ .|+|.||++++++ .+...+... .+ .++.+.....++..++.... .
T Consensus 246 -~~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~--~ 320 (483)
T 1rv3_A 246 -HCHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM--T 320 (483)
T ss_dssp -TCSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT--S
T ss_pred -CCcEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh--C
Confidence 1236789999987 6888899998754 123333222 11 12233333444444443211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC-ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe----CCCCCC
Q 037587 325 NYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN-AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS----PGSSCH 399 (464)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~----pg~~f~ 399 (464)
..+++.++++.++++++.+.|.+.|+++..+. .++++|++++... . . ..++ ..+|++.||.+. ||..+.
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g--~--~-~~~~-~~~L~~~gI~v~~~~~pg~~~~ 394 (483)
T 1rv3_A 321 PEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKG--T--D-GGRA-EKVLEACSIACNKNTCPGDKSA 394 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGT--C--C-HHHH-HHHHHHTTEECEEECCSSCSCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCC--C--C-HHHH-HHHHHhCCcEEecCCCCCCCcC
Confidence 23566777888899999999999899887653 3568889886421 0 1 1123 455678899999 887422
Q ss_pred CCCCCeEEEEeec-CC----HHHHHHHHHHHHHHHHh
Q 037587 400 CNEPGWFRICFAN-IT----EETLQVALQRIKVFAQS 431 (464)
Q Consensus 400 ~~~~~~~Ris~~~-~~----~e~l~~~l~~l~~~l~~ 431 (464)
..++++||+++. .+ ++++++++++|+++++.
T Consensus 395 -~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 395 -LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp -TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 246789999975 34 89999999999999876
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=232.87 Aligned_cols=331 Identities=15% Similarity=0.136 Sum_probs=204.3
Q ss_pred CCCCceEEeecccc--cc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 33 HNPSGIIQMGLAEN--QL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 33 ~~~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
.+...+|||+.+.+ ++ ++|.+.+++.+..+ ....|.. ....+++..+++.+.+..+
T Consensus 62 ~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~-------------~~~~~~~-~~~~~~~~~l~~~la~~~g------ 121 (433)
T 1z7d_A 62 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAK-------------NLTICSR-AFFSVPLGICERYLTNLLG------ 121 (433)
T ss_dssp TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHT-------------TCSCCCT-TSEEHHHHHHHHHHHHHHT------
T ss_pred CCCCEEEEcccchhhcccCCCCHHHHHHHHHHHH-------------hCCCccC-CcCCHHHHHHHHHHHhhcC------
Confidence 34556899987543 43 34667776666421 1111111 1123444455555444332
Q ss_pred CCcEEEeCChHHHHHHHHHHhc---------CCC-CeEEEcCCCCCChhhhcccCCC------------cEEEEEecCCC
Q 037587 109 PNKLVLTAGSTAANETLMFCLA---------DPG-DAFLLPTPYYPGFDRDLKWRPG------------VEIVPIHCSSS 166 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~---------~~g-d~Vlv~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~ 166 (464)
.++|++++|+++++..+++++. .+| +.|++.+|+|+++...+....| ..++.+|.
T Consensus 122 ~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~--- 198 (433)
T 1z7d_A 122 YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY--- 198 (433)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT---
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC---
Confidence 5789999999999999998753 467 9999999999876443222213 23444442
Q ss_pred CCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 167 NGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 167 ~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
.|++.|++.++. +++++| +++| +|+||.+ +|.+.+++|.++|+++|+++|+||+|.++...+. . .
T Consensus 199 ----~d~~~le~~l~~-----~~~~~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~--~-~ 265 (433)
T 1z7d_A 199 ----DDLEALEEELKD-----PNVCAF-IVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--L-L 265 (433)
T ss_dssp ----TCHHHHHHHHTS-----TTEEEE-EECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--S-S
T ss_pred ----CCHHHHHHHhCC-----CCEEEE-EEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc--c-h
Confidence 278999988841 267655 4556 5778975 6888999999999999999999999986433222 1 1
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCCch
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~ 321 (464)
. .+... ....+ .||||.+| +| +|+||+++++ .+.+.+... ...+..+++++.++.++++..+
T Consensus 266 ~-~~~~~---------~~~di---~t~sK~l~-~G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~ 330 (433)
T 1z7d_A 266 C-VHHYN---------VKPDV---ILLGKALS-GGHYPISAVLAND-DIMLVIKPGEHGSTYGGNPLAASICVEALNVLI 330 (433)
T ss_dssp G-GGGGT---------CCCSE---EEECGGGG-TTSSCCEEEEECH-HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred h-hHhcC---------CCCCE---EEECcccc-CCCCCeEEEEECH-HHHhhhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 1 11111 11222 28999999 89 9999999954 444433321 1223467788887777765321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhC--CCe---eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVA--GIR---CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~---~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
+ +...+.++++++++.+.|+++ +++ ..++. |.|+|++++... ....+++..++ ++||.+.|+
T Consensus 331 ---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~-g~~~~i~~~~~~-----~~~~~~~~~l~-~~Gv~v~~~- 397 (433)
T 1z7d_A 331 ---N--EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGK-GLLCAIEFKNEL-----VNVLDICLKLK-ENGLITRDV- 397 (433)
T ss_dssp ---H--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEE-TTEEEEEECTTT-----CCHHHHHHHHH-HTTEECCEE-
T ss_pred ---h--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEee-eeEEEEEEccCh-----hHHHHHHHHHH-HCCeEEecC-
Confidence 1 123444555666666666654 332 23344 458889887421 01235677776 579999986
Q ss_pred CCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 397 SCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 397 ~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+.+++||+++. .+++++++++++|++++++.
T Consensus 398 -----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 398 -----HDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp -----TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 25689998875 68999999999999998764
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=236.83 Aligned_cols=342 Identities=13% Similarity=0.096 Sum_probs=217.0
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCC---CCCcHHHH--HHHH-HHHHHHcCCCCCCCCC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQD---YHGFPDAK--KELV-KLMARIRGNKVKFDPN 110 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~lr--~~ia-~~~~~~~~~~~~~~~~ 110 (464)
+.|+|..++|+.+ +.+.+++.+.... .....|+. +.|...++ ++++ +++.+.+| ++.
T Consensus 46 ~~i~l~~~~~~~~-~~v~~a~~~~~~~-----------~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g----~~~- 108 (447)
T 3h7f_A 46 DTLEMIASENFVP-RAVLQAQGSVLTN-----------KYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG----AEF- 108 (447)
T ss_dssp HSEECCTTCCCCC-HHHHHHHTSGGGG-----------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSE-
T ss_pred CceeEecCCCCCC-HHHHHHHHHHhcC-----------CccccCCcccccCccHHHHHHHHHHHHHHHHHcC----CCc-
Confidence 5689988888764 4455555443110 00112221 12444444 5555 66666554 333
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh-hhc--ccC-CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD-RDL--KWR-PGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~-~~~--~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
..++++|+++++..++.+++++||+|+++.|+|..+. ... ... .+..++++++++ +++.+|++++++.+.+.
T Consensus 109 ~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~--- 184 (447)
T 3h7f_A 109 ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDP-ATHLIDMDAVRATALEF--- 184 (447)
T ss_dssp EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCT-TTCSCCHHHHHHHHHHH---
T ss_pred eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCc-ccCCcCHHHHHHHHHhc---
Confidence 2333777889999999999999999999999998732 211 111 144666777654 34679999999998652
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc-cccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG-TVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
++++|++++|+||++. ++++|.++|+++|+++|+||+|.. +.+.+. . .+.. + ...
T Consensus 185 --~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~--~-~~~~---~-----------~~d 240 (447)
T 3h7f_A 185 --RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGL--H-PSPV---P-----------HAD 240 (447)
T ss_dssp --CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--S-CCST---T-----------TCS
T ss_pred --CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCC--C-CCCC---C-----------CCc
Confidence 6788888899999986 578899999999999999999743 223222 1 1111 1 123
Q ss_pred EEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-cccC--CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Q 037587 266 HIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSFG--LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLV 342 (464)
Q Consensus 266 i~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (464)
+++.|+||++ +|+|.||++++++ +.+.+... ..+. +.....+.++..++... ....+++.++.+.++++++.
T Consensus 241 i~~~s~sK~l--~G~~gG~i~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~ 315 (447)
T 3h7f_A 241 VVSTTVHKTL--GGGRSGLIVGKQQ-YAKAINSAVFPGQQGGPLMHVIAGKAVALKIA--ATPEFADRQRRTLSGARIIA 315 (447)
T ss_dssp EEEEESSGGG--CCCSCEEEEECGG-GHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCC--CCCCeEEEEECHH-HHHHHhhhcCCcccCCccHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHH
Confidence 6789999987 5889999999554 44444433 2222 22233333333333221 12235667778888889999
Q ss_pred HHHHhC-----CCeeec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeec
Q 037587 343 SGLKVA-----GIRCLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFAN 412 (464)
Q Consensus 343 ~~l~~~-----g~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~ 412 (464)
+.|.+. |+++.. +..++++|+++..... . .+.+..+++++||.+. |+..+++..++++||++..
T Consensus 316 ~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~ 389 (447)
T 3h7f_A 316 DRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPL----D--GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPA 389 (447)
T ss_dssp HHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSC----C--HHHHHHHHHHTTEECBC-------------CEEEEECHH
T ss_pred HHHHhccccCCCeEEecCCCCCCEEEEEcCCCCC----C--HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHH
Confidence 999887 888765 3345688888853211 1 1345666778899998 6643333446789998753
Q ss_pred -----CCHHHHHHHHHHHHHHHHhhCc
Q 037587 413 -----ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 413 -----~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
+++++++++++.|.+++++...
T Consensus 390 ~~~~~~~~eei~~~~~~l~~~l~~~~~ 416 (447)
T 3h7f_A 390 LATRGFGDTEFTEVADIIATALATGSS 416 (447)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHSGGG
T ss_pred HhhCCCCHHHHHHHHHHHHHHHhccCc
Confidence 4689999999999999987654
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=231.39 Aligned_cols=193 Identities=22% Similarity=0.277 Sum_probs=145.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccC
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWR 153 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~ 153 (464)
.+|+. .+..+|++++|++++ .+ +.|++++| ++++..++. ++++||.|+++.|+|++.... ++..
T Consensus 62 ~r~~~-p~~~~l~~~la~~~g--------~~-~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~ 129 (403)
T 3cog_A 62 SRSGN-PTRNCLEKAVAALDG--------AK-YCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEF 129 (403)
T ss_dssp ----C-HHHHHHHHHHHHHHT--------CS-EEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGG
T ss_pred cCCCC-chHHHHHHHHHHHhC--------CC-cEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHc
Confidence 34543 346899999999986 22 66777776 589999998 899999999999999874432 3445
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC-eEEEEecccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR-IHIVSDEIYS 232 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~-~~lI~Deay~ 232 (464)
|++++.++.+ |++.+++.+++ ++++|++++|+||||.+++ +++|+++|+++| +++|+||+|.
T Consensus 130 -G~~v~~v~~~-------d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~ 192 (403)
T 3cog_A 130 -GLKISFVDCS-------KIKLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFM 192 (403)
T ss_dssp -TCEEEEECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTT
T ss_pred -CCEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCc
Confidence 9999998864 68888887753 7899999999999999986 788899999999 9999999998
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhcc-cC-CCChHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSS-FG-LVSSQT 309 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~-~~-~~s~~~ 309 (464)
...+. . ++ .+ +.+++++|+||.+|.+| +|+||++++++.+.+.+..... +. ..+++.
T Consensus 193 ~~~~~-~-----~~-~~-------------~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~ 252 (403)
T 3cog_A 193 SPYFQ-R-----PL-AL-------------GADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPID 252 (403)
T ss_dssp CTTTC-C-----TT-TT-------------TCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHH
T ss_pred ccccC-C-----cc-cc-------------CCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHH
Confidence 65332 1 11 11 46688999999998766 5799999966666555544332 22 357778
Q ss_pred HHHHHHHcCC
Q 037587 310 QYLLSRMLSD 319 (464)
Q Consensus 310 q~~~~~~l~~ 319 (464)
+.++...++.
T Consensus 253 ~~~~~~~l~~ 262 (403)
T 3cog_A 253 CYLCNRGLKT 262 (403)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHhhhhH
Confidence 8777777765
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-26 Score=227.40 Aligned_cols=294 Identities=15% Similarity=0.130 Sum_probs=200.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh-c--ccCCCc--EEEEEecCC
Q 037587 91 KELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD-L--KWRPGV--EIVPIHCSS 165 (464)
Q Consensus 91 ~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~--~~~~g~--~~~~v~~~~ 165 (464)
++++++++ ++++.|++++| ++++..++.+++++||.|+++.|+|+.+... . ... |. +++.+++++
T Consensus 76 ~~la~~~g--------~~~~~i~~~sG-t~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~ 145 (405)
T 2vi8_A 76 ERAKQLFG--------AEHANVQPHSG-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDP 145 (405)
T ss_dssp HHHHHHHT--------CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHH-HHHSEEEEECBCT
T ss_pred HHHHHHhC--------CCceEEEecCc-HHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhc-cceeEEEeccccc
Confidence 45666553 45555556677 9999999999999999999999999887542 1 222 44 777777653
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~ 245 (464)
.++.+|++++++.+++. ++++|++ +|+|+ |... ++++|.++|+++|+++|+||+|....+... ....
T Consensus 146 -~~~~~d~~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~--~~~~ 212 (405)
T 2vi8_A 146 -ETHVIDYDDVREKARLH-----RPKLIVA-AAAAY-PRII---DFAKFREIADEVGAYLMVDMAHIAGLVAAG--LHPN 212 (405)
T ss_dssp -TTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSC-CSCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTT--SSCC
T ss_pred -ccCCcCHHHHHHHHHhc-----CCeEEEE-eCCCC-CccC---CHHHHHHHHHHcCCEEEEEccccccccccC--cCCC
Confidence 35779999999998752 5677666 56554 3443 378899999999999999999984322221 1011
Q ss_pred hhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhcccCC---CChHHHHHHHHHcCCch
Q 037587 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSFGL---VSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~~~---~s~~~q~~~~~~l~~~~ 321 (464)
.+ . ...++++||||+++ +.| ||++++ +.+.+.+......+. .+.....++.++++...
T Consensus 213 --~~-~-----------~~di~~~s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~ 274 (405)
T 2vi8_A 213 --PV-P-----------YAHFVTTTTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL 274 (405)
T ss_dssp --ST-T-----------TCSEEEEESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH
T ss_pred --cc-c-----------cCCEEEEeccccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH
Confidence 11 1 12277899999996 666 999995 555555554432221 23333334344554211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCC---
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS-NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS--- 397 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~--- 397 (464)
..++++.++.++++++++.+.|++.|+++..+ .+++++|++++... . ...++...| .++||.++||..
T Consensus 275 --~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~l-~~~gi~v~~g~~~~~ 346 (405)
T 2vi8_A 275 --QDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQ--L---TGKTAEKVL-DEVGITVNKNTIPYD 346 (405)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT--C---CHHHHHHHH-HHHTEECEEECCTTC
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCC--C---CHHHHHHHH-HHcCceeccCcCccc
Confidence 23567788888999999999999889888764 35679999987421 0 122455554 678999999863
Q ss_pred -CCCCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHHhhC
Q 037587 398 -CHCNEPGWFRICFAN-----ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 398 -f~~~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++...++++||+++. ++++++++++++|++++++.+
T Consensus 347 ~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 347 PESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred cCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 333345789999984 579999999999999987665
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-27 Score=226.89 Aligned_cols=276 Identities=14% Similarity=0.153 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEEEec
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVPIHC 163 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~v~~ 163 (464)
++++++|++++ .+ +.+++++| ++++..++.+++++||.|+++.|+|+.+...+ ... |++++.++.
T Consensus 2 ~l~~~la~~~g--------~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 70 (331)
T 1pff_A 2 ALEGKIAKLEH--------AE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF-GVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHT--------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEECT
T ss_pred hHHHHHHHHhC--------CC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhc-CCEEEEeCC
Confidence 68999999986 33 55555555 89999999999999999999999999876654 235 999988875
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh-CCeEEEEeccccccccCCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS-KRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~-~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.|++.+++.+++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+||+|....+. .
T Consensus 71 -------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~-~--- 130 (331)
T 1pff_A 71 -------AVPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT-N--- 130 (331)
T ss_dssp -------TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC-C---
T ss_pred -------CCHHHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC-C---
Confidence 367888887653 7899999999999999986 7888999999 99999999999854332 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccE-EEEEEecCHHHHHHHHHhccc-C--CCChHHHHHHHHHcC
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR-VGMIYSNNERVVSAATKMSSF-G--LVSSQTQYLLSRMLS 318 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlR-iG~l~~~~~~~~~~~~~~~~~-~--~~s~~~q~~~~~~l~ 318 (464)
+. .. ++++++.|+||.+|.+|.| +||++++++.+.+.+...... + ..+++.+.++...++
T Consensus 131 --~~-~~-------------~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (331)
T 1pff_A 131 --PL-DL-------------GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTL 194 (331)
T ss_dssp --GG-GG-------------TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred --hh-hc-------------CCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcc
Confidence 11 11 5678899999999989999 899999653566666554443 2 456667666555543
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCeeec----CCccEEEEEecCcccccCChhHHHH
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVA---------------GIRCLK----SNAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------------g~~~~~----~~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
. .....+...++...+.+.+++. ++++.+ ..++ ++.+.++. . +
T Consensus 195 ~-------~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~-~ 256 (331)
T 1pff_A 195 T-------LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGS-MIAFDVDG---------L-E 256 (331)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCS-EEEEECSS---------H-H
T ss_pred h-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCce-EEEEEECC---------H-H
Confidence 2 1122222333333344444322 222221 1344 66677651 1 1
Q ss_pred HHHHHHHhcCeEEeCCCCCC------------------------CCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 380 LWKKIIFEVGLNISPGSSCH------------------------CNEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~------------------------~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
....+++++||.+++++.-+ ...++++||+++. .++++++.+++.|+++
T Consensus 257 ~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 257 KAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 24455678899887653111 0125799999987 5677788777777653
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-26 Score=224.49 Aligned_cols=279 Identities=16% Similarity=0.157 Sum_probs=191.6
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~ 160 (464)
+..+++++++++++ .+ +.|++++| ++++..++.+++++||.|+++.|+|++.... +... |++++.
T Consensus 53 ~~~~l~~~la~~~~--------~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~-g~~~~~ 121 (386)
T 1cs1_A 53 TRDVVQRALAELEG--------GA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG-CYRVLF 121 (386)
T ss_dssp HHHHHHHHHHHHHT--------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTT-SCEEEE
T ss_pred cHHHHHHHHHHHhC--------CC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhc-CCEEEE
Confidence 45889999999986 23 66777666 8999999999999999999999999864443 2444 999998
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+ |++.+++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+. .
T Consensus 122 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~-~- 183 (386)
T 1cs1_A 122 VDQG-------DEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ-N- 183 (386)
T ss_dssp ECTT-------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C-
T ss_pred eCCC-------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-C-
Confidence 8753 78999998864 7899999999999999986 778888999999999999999865332 1
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRML 317 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l 317 (464)
.. .+ +.++++.|+||.+|.+|.|+ ||++++++.+.+.+...... ...+++.+.++...+
T Consensus 184 ----~~-~~-------------~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l 245 (386)
T 1cs1_A 184 ----PL-AL-------------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 245 (386)
T ss_dssp ----GG-GG-------------TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred ----cc-cc-------------CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Confidence 11 11 46688999999998899997 99999775555544443322 235667776665555
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-Ce-e-ec----------------CCccEEEEEecCcccccCChhHHH
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IR-C-LK----------------SNAGLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~-~-~~----------------~~~g~f~~~~l~~~~~~~~~~~~~ 378 (464)
+. +....+.+.++++.+.+.|+++. +. + .+ ..++ ++.+.++.. .
T Consensus 246 ~~-------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~- 308 (386)
T 1cs1_A 246 RT-------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGA-MLSFELDGD--------E- 308 (386)
T ss_dssp TT-------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEESSC--------H-
T ss_pred cH-------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCce-EEEEEECCC--------H-
Confidence 42 23334445556667777776642 21 1 11 1254 565666531 1
Q ss_pred HHHHHHHHhcCeEEeCCCCCC-------------------------CCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 379 ELWKKIIFEVGLNISPGSSCH-------------------------CNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~pg~~f~-------------------------~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.....+.++||.+++++ |+ ...++++||+++. ++.++.+++|.+++++
T Consensus 309 ~~~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 309 QTLRRFLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRA 382 (386)
T ss_dssp HHHHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHH
Confidence 123445578899987421 11 0125799999986 3344444555544443
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-26 Score=231.22 Aligned_cols=355 Identities=11% Similarity=0.039 Sum_probs=226.4
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ .+.+. +|.+.+++.+.. .....+....+..+++.++++++.+.++
T Consensus 47 ~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~-- 111 (476)
T 3i5t_A 47 YVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQA-------------MVLPYASPWYMATSPAARLAEKIATLTP-- 111 (476)
T ss_dssp EEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCCCCCTTTCBCHHHHHHHHHHHTTSS--
T ss_pred EEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHH-------------HhccCcccCccCCHHHHHHHHHHHhcCC--
Confidence 3334455678999877 56553 567777766642 2222222224668889999999987643
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCCCChhhhcccCC--------------CcEEEEEe
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLAD--------PGDAFLLPTPYYPGFDRDLKWRP--------------GVEIVPIH 162 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~~--------------g~~~~~v~ 162 (464)
...++|++++|+++++..+++++.. .++.|++.+|+|+++...+.... +...++.|
T Consensus 112 --~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 189 (476)
T 3i5t_A 112 --GDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSP 189 (476)
T ss_dssp --TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCC
T ss_pred --CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCC
Confidence 4567999999999999999998753 36799999999988764432221 22233333
Q ss_pred cCCCCCcccC--------HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 163 CSSSNGFRIT--------ISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 163 ~~~~~~~~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
....+ +..+ +++|++.+.+.. ..++++|++..++|++|. +.+.+.+++|.++|+++|+++|+||+|.+
T Consensus 190 ~~~~~-~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g 266 (476)
T 3i5t_A 190 NPRHA-GNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTG 266 (476)
T ss_dssp CGGGC-TTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred ccccc-CCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 21111 1222 678888776421 135677666666788885 77889999999999999999999999998
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh---------cccC
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM---------SSFG 303 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~---------~~~~ 303 (464)
+...+. . ........ ..+.++ +|||++| .| +|+|++++ ++.+.+.+... ...+
T Consensus 267 ~gr~G~--~-~~~~~~~~---------v~pdi~---t~sK~l~-~G~~plg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~ 329 (476)
T 3i5t_A 267 FGRCGE--W-FASEKVFG---------VVPDII---TFAKGVT-SGYVPLGGLAI-SEAVLARISGENAKGSWFTNGYTY 329 (476)
T ss_dssp TTTTSS--S-CHHHHTTC---------CCCSEE---EECGGGG-TTSSCCEEEEE-CHHHHHTTSGGGCTTCEECCCCTT
T ss_pred CccccC--c-eeeecccC---------CCcchh---hhhhhhc-CCCcCeEEEEE-CHHHHHHHhcCCcccccccccCCC
Confidence 533332 1 12110111 112333 7899998 69 99999999 55565555432 1224
Q ss_pred CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccC-Chh---
Q 037587 304 LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSN-TFE--- 375 (464)
Q Consensus 304 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~-~~~--- 375 (464)
..++++++++.++|+..+- +...+.++++.+++.+.|+++ .+...++.|. |+++++....... .+.
T Consensus 330 ~~np~a~aAa~aaL~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~-~~~i~~~~~~~~~~~~~~~~ 403 (476)
T 3i5t_A 330 SNQPVACAAALANIELMER-----EGIVDQAREMADYFAAALASLRDLPGVAETRSVGL-VGCVQCLLDPTRADGTAEDK 403 (476)
T ss_dssp TTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETT-EEEEEECCC-----CCHHHH
T ss_pred CcCHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc-eeEEEEecCccccccccchh
Confidence 5678888888888763211 123334444555555555543 2344455554 7778876431111 100
Q ss_pred -HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 376 -AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 376 -~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
...+++..++ ++||.++|+. +++||++.. .+++++++++++|++++++...
T Consensus 404 ~~~~~~~~~l~-~~Gv~v~~~g-------~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 404 AFTLKIDERCF-ELGLIVRPLG-------DLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp HHHHHHHHHHH-HTTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1335666665 5699999841 689999654 6999999999999999876653
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=236.42 Aligned_cols=282 Identities=12% Similarity=0.078 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCC-CCcEEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh-hhhcccC-CCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFD-PNKLVL-TAGSTAANETLMFCLADPGDAFLLPTPYYPGF-DRDLKWR-PGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~-~~~i~i-t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~-~~~~~~~-~g~~~~~v~ 162 (464)
.++|+.++++++ ++ +++|++ |+|+++++.+++.+++++| .+.+..+.|... ...+... .|.+++.++
T Consensus 81 ~~~~~~la~~~g--------~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~ 151 (398)
T 2fyf_A 81 GRVRSGLAELFS--------LPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIIT 151 (398)
T ss_dssp HHHHHHHHHHTT--------CCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEE
T ss_pred HHHHHHHHHHhC--------CCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEe
Confidence 445555555553 44 468998 9999999999999999887 223333323210 1112221 167788888
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
++ .++..+.+ + .+++++|++++|+||||.+++.+++.++ +|+++|+||+|+.+ .. +
T Consensus 152 ~~--~g~~~~~~-----i------~~~~~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~---~~--~ 207 (398)
T 2fyf_A 152 SD--PGSAPEPQ-----T------DPSVDVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAG---GL--P 207 (398)
T ss_dssp CC--TTCCCCCC-----C------CTTCSEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTT---TS--C
T ss_pred cC--CCCCCCcc-----c------cCCCCEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccC---Cc--c
Confidence 76 23433321 1 2378999999999999999998877664 79999999999843 12 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-----------------------
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM----------------------- 299 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~----------------------- 299 (464)
.+ + . +..+++.|+||++|++| ++||++++++ +.+.+++.
T Consensus 208 -~~---~-~-----------~~di~~~s~sK~~~~~g-g~g~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (398)
T 2fyf_A 208 -VD---I-A-----------ETDAYYFAPQKNFASDG-GLWLAIMSPA-ALSRIEAIAATGRWVPDFLSLPIAVENSLKN 269 (398)
T ss_dssp -CC---G-G-----------GCSEEEECTTSTTCSCS-SEEEEEECHH-HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTT
T ss_pred -cC---c-c-----------cCcEEEEecCcccCCCC-ceEEEEECHH-HHHHhhcccccCCCCCcEEehHHHhhhcccC
Confidence 11 1 1 12367899999999776 5999999554 43333211
Q ss_pred cccCCCChHHHHHHHHHcCCchhhHHH--HHHHHHHHHHHHHHHHHHHHhC-CCeeec--C--CccEEEEEecCcccccC
Q 037587 300 SSFGLVSSQTQYLLSRMLSDKKFTCNY--MKENRKRLRKRKEMLVSGLKVA-GIRCLK--S--NAGLFCWVDMRHLLVSN 372 (464)
Q Consensus 300 ~~~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~~--~--~~g~f~~~~l~~~~~~~ 372 (464)
..+++.+...+.++..+++.. .+. +++.++.++++++++.+.|+++ |+++.. + .+++++|++++....
T Consensus 270 ~~~~t~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 344 (398)
T 2fyf_A 270 QTYNTPAIATLALLAEQIDWL---VGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVD-- 344 (398)
T ss_dssp CCSSCCCHHHHHHHHHHHHHH---HHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSC--
T ss_pred CCCCCCCHHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCC--
Confidence 123445566666666666421 222 6677888888999999999988 888763 3 356689999864211
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
..+++..|. ++||.+++|. ...+.+++||+++. .+++++++++++|++++++
T Consensus 345 ----~~~l~~~L~-~~gI~v~~g~--~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 345 ----AGTVAKILR-ANGIVDTEPY--RKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp ----HHHHHHHHH-HTTCBCCSCC--TTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHH-HCCcEEecCc--ccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 235667765 5599999873 22235789999986 6899999999999998765
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=232.72 Aligned_cols=354 Identities=13% Similarity=0.049 Sum_probs=220.0
Q ss_pred CCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccc-cCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELA-LFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
|..+.+...+|||..+ .|++. +|.+.+++.+... ... .|....+..+.+.++++.+.+..+
T Consensus 48 ~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~-------------~~~~~~~~~~~~~~~~~~lae~l~~~~~- 113 (472)
T 3hmu_A 48 WLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMR-------------ELPYYNTFFKTTHVPAIALAQKLAELAP- 113 (472)
T ss_dssp EEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHH-------------HCSCCCSSSSEECHHHHHHHHHHHHHSC-
T ss_pred EEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHH-------------hccccccccccCCHHHHHHHHHHHHhCC-
Confidence 3344456678999877 66664 5677777666422 111 233333446677777777766543
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCCCChhhhcccCCCc-----------EEEEEecC
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLAD--------PGDAFLLPTPYYPGFDRDLKWRPGV-----------EIVPIHCS 164 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~~g~-----------~~~~v~~~ 164 (464)
...++|++++|+++++..+++++.. +++.|++.+|+|+++...+....|. .+..++.+
T Consensus 114 ---~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p 190 (472)
T 3hmu_A 114 ---GDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQP 190 (472)
T ss_dssp ---TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCC
T ss_pred ---CCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCC
Confidence 4567999999999999999998864 4689999999998876443322121 23344422
Q ss_pred C--C-CCcccC--------HHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 165 S--S-NGFRIT--------ISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 165 ~--~-~~~~~d--------~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
. . +++ .+ ++.|++.+.+.. ..++++|++..++|++|.+. +.+.+++|.++|+++|+++|+||+|.
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 267 (472)
T 3hmu_A 191 NWWAEGGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC 267 (472)
T ss_dssp CHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccccCCcc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 1 0 111 23 677887776421 12555555544467777755 88889999999999999999999999
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh----cccCCCChH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM----SSFGLVSSQ 308 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~----~~~~~~s~~ 308 (464)
++...+. . .. .+... ..+.++ +|||++|..|+|+||++++ +.+.+.+... ...+..+++
T Consensus 268 gfgr~G~--~-~a-~~~~~---------v~pdi~---t~sK~l~gg~~plG~v~~~-~~i~~~~~~~~~~~~~t~~~np~ 330 (472)
T 3hmu_A 268 GFGRTGN--W-FG-TQTMG---------IRPHIM---TIAKGLSSGYAPIGGSIVC-DEVAHVIGKDEFNHGYTYSGHPV 330 (472)
T ss_dssp TTTTTSS--S-CH-HHHHT---------CCCSEE---EECGGGTTTSSCCEEEEEE-HHHHHHHTTSCBCCCCTTTTCHH
T ss_pred CCcccCc--c-ch-hHHhC---------CCCcee---eechhhhcCCcceEEEEEC-HHHHHhcccCCccccCCCCCCHH
Confidence 8533332 1 11 12211 112333 7899998445999999994 5555555311 112346788
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHH-HHHHHHHHHHHh---C-CCeeecCCccEEEEEecCcccccC-C-----hhHH
Q 037587 309 TQYLLSRMLSDKKFTCNYMKENRKRLR-KRKEMLVSGLKV---A-GIRCLKSNAGLFCWVDMRHLLVSN-T-----FEAE 377 (464)
Q Consensus 309 ~q~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~---~-g~~~~~~~~g~f~~~~l~~~~~~~-~-----~~~~ 377 (464)
+++++.++|+..+- +...+.++ ++.+++.+.|++ + .+...++.|. |+++++....... . ....
T Consensus 331 a~aAa~aaL~~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~-~~~i~~~~~~~~~~~~~~~~~~~~ 404 (472)
T 3hmu_A 331 AAAVALENLRILEE-----ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGM-MASIALTPNKASRAKFASEPGTIG 404 (472)
T ss_dssp HHHHHHHHHHHHHH-----TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETT-EEEEEECSCGGGTCCBSSCTTHHH
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc-eEEEEEecCccccccccchhHHHH
Confidence 99888888763211 11223333 344444444443 3 2344455554 7777775321110 0 1113
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 378 KELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+++..++ ++||+++|+. +++||++.. .+++++++++++|++++++..
T Consensus 405 ~~~~~~l~-~~Gv~v~~~g-------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 405 YICRERCF-ANNLIMRHVG-------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HHHHHHHH-HTTBCCEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35666665 6799999862 689999654 699999999999999987664
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=231.31 Aligned_cols=329 Identities=12% Similarity=0.128 Sum_probs=212.5
Q ss_pred CCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCC-CCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 30 DQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQ-DYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 30 ~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
....+..++++|+.+.+.+++ .+.+++.+... ...|+ +..+..++|+++|++++ .
T Consensus 16 ~~~~~~~~~~~l~~~~p~~~~-~~~~a~~~~~~--------------~~~~~~~~~~~~~l~~~la~~~~--------~- 71 (391)
T 3dr4_A 16 YFQGHMSDLPRISVAAPRLDG-NERDYVLECMD--------------TTWISSVGRFIVEFEKAFADYCG--------V- 71 (391)
T ss_dssp ------------CCCCCCCCS-SHHHHHHHHHH--------------HTCCSSCSHHHHHHHHHHHHHHT--------C-
T ss_pred hhhhhcCCCceeccCCCCCCH-HHHHHHHHHHH--------------cCCccCCChHHHHHHHHHHHHhC--------C-
Confidence 333445678899988877664 34444443211 12455 55678999999999986 2
Q ss_pred CCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC
Q 037587 109 PNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
+++++++|+++++..++.++ +++||+|+++.|+|+.+...+... |++++.+++++ +++.+|++.+++.+++
T Consensus 72 -~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~----- 143 (391)
T 3dr4_A 72 -KHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYC-GATPVLVDNDP-RTFNLDAAKLEALITP----- 143 (391)
T ss_dssp -SEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTCSBCGGGSGGGCCT-----
T ss_pred -CcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHC-CCEEEEEecCc-cccCcCHHHHHHhcCC-----
Confidence 27888999999999999999 899999999999999998888877 99999999875 3578999999987753
Q ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
++++|+ |+||||...+ +++|.++|+++|+++|+|++|+....... .....+ . .+.
T Consensus 144 -~~~~v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~----~~~~~~-------------~-di~ 198 (391)
T 3dr4_A 144 -RTKAIM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRG----KKSGSL-------------G-DCA 198 (391)
T ss_dssp -TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT----EETTSS-------------S-SEE
T ss_pred -CceEEE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECC----eeeccc-------------C-CEE
Confidence 777766 5689999865 67788889999999999999984222111 111001 1 255
Q ss_pred EcCCC--cCCCCCccEEEEEEecCHHHHHHHHHhcccC----------------CCChHHHHHHHHHcCCchhhHHHHHH
Q 037587 268 VYSLS--KDFSMPGFRVGMIYSNNERVVSAATKMSSFG----------------LVSSQTQYLLSRMLSDKKFTCNYMKE 329 (464)
Q Consensus 268 l~S~S--K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~----------------~~s~~~q~~~~~~l~~~~~~~~~~~~ 329 (464)
+.||| |.+ +|.+.|+++++++.+.+.+......+ ..+.+..++....+ +.+++
T Consensus 199 ~~S~s~~K~l--~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~-------~~~~~ 269 (391)
T 3dr4_A 199 TFSFFGNAII--TTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQL-------ERVDE 269 (391)
T ss_dssp EEECBTTSSS--CCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHH-------HTHHH
T ss_pred EEECCCCCcC--CcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHH-------HHHHH
Confidence 67766 766 44579999987777766655443221 12222222222111 12344
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeecC------Ccc-EEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCC---C
Q 037587 330 NRKRLRKRKEMLVSGLKVAGIRCLKS------NAG-LFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC---H 399 (464)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~~g~~~~~~------~~g-~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f---~ 399 (464)
..+..++..+++.+.|.+.|+.+..+ ..+ +.+++.++.... ....++...| .++||.++++... .
T Consensus 270 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~L-~~~GI~v~~~~~p~~~~ 344 (391)
T 3dr4_A 270 HLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLS----TTRDQVIKDL-DALGIESRPVFHPMHIM 344 (391)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCS----SCHHHHHHHH-HHTTCCCEECCCCGGGS
T ss_pred HHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCccc----hhHHHHHHHH-HHCCCceeecCCccccC
Confidence 44555666677888888777776544 122 234666664200 1122466666 4679999987521 0
Q ss_pred C--------C-------CCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 400 C--------N-------EPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 400 ~--------~-------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
+ . ..+.+||++.. .++++++.++++|++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 345 PPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp GGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred hhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0 0 12469999977 79999999999998754
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=227.07 Aligned_cols=323 Identities=13% Similarity=0.129 Sum_probs=217.8
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA 116 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~ 116 (464)
.+++|+.+.+.+.. +.+++.+... ...|.+..+..+++++++++++ .+++++++
T Consensus 7 ~~~~l~~~~~~~~~--~~~~~~~~~~--------------~~~~~~~~~~~~l~~~la~~~~----------~~~~~~~~ 60 (374)
T 3uwc_A 7 PYSYLERQFADIEP--YLNDLREFIK--------------TADFTLGAELEKFEKRFAALHN----------APHAIGVG 60 (374)
T ss_dssp CSCCHHHHTSSCHH--HHHHHHHHHH--------------HTCCSSCHHHHHHHHHHHHHTT----------CSEEEEES
T ss_pred eeeccccCCCCchH--HHHHHHHHHH--------------cCCcccChhHHHHHHHHHHHhC----------CCcEEEeC
Confidence 45788887776655 5665555321 1246666678999999999975 23788999
Q ss_pred ChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEE
Q 037587 117 GSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195 (464)
Q Consensus 117 G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil 195 (464)
|+++++..++.++ +++||+|+++.|+|+.+...+... |++++.++.+ .++.+|++++++.+++ ++++|+
T Consensus 61 ~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~--~~~~~d~~~l~~~~~~------~~~~v~- 130 (374)
T 3uwc_A 61 TGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQA-GATPVLVDSE--NGYVIDPEKIEAAITD------KTKAIM- 130 (374)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECBC--TTSSBCGGGTGGGCCT------TEEEEC-
T ss_pred CHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-CCEEEEEecC--CCCCcCHHHHHHhCCC------CceEEE-
Confidence 9999999999999 999999999999999998888877 9999999987 4678899999987754 677666
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC--
Q 037587 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS-- 272 (464)
Q Consensus 196 ~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S-- 272 (464)
|+||||...+ +++|.++|+++|+++|+||+|.... +... .... -..+++.|+|
T Consensus 131 --~~n~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~-----~~~~--------------~~d~~~~s~~~~ 186 (374)
T 3uwc_A 131 --PVHYTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDK-----FVGS--------------WGQFACFSLHPL 186 (374)
T ss_dssp --CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE-----ETTS--------------SSSEEEEECSSS
T ss_pred --EeCCcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCe-----eccc--------------cccEEEEeCCCC
Confidence 8899999875 7778888999999999999998532 2211 1100 1235677866
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccC--------------CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHH
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFG--------------LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRK 338 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~--------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 338 (464)
|.+|.+|. .|+++++++.+.+.+....... ..+.+...+....+. . +++..++.++..
T Consensus 187 K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~---~----~~~~~~~~~~~~ 258 (374)
T 3uwc_A 187 KNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMN---Q----LETITEKRRGIA 258 (374)
T ss_dssp SSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGG---G----HHHHHHHHHHHH
T ss_pred CcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHH---H----HHHHHHHHHHHH
Confidence 99984475 8999987777766655543210 123333333222221 1 333444555666
Q ss_pred HHHHHHHHhCC--Ceeec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC--------------C
Q 037587 339 EMLVSGLKVAG--IRCLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC--------------N 401 (464)
Q Consensus 339 ~~l~~~l~~~g--~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~--------------~ 401 (464)
+++.+.|.+.+ +.+.. +.++...|..++-.. .+..++...| .++||.++++..... .
T Consensus 259 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L-~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~ 332 (374)
T 3uwc_A 259 HLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-----KYRDQLFQYL-KDNGIEVKIHYPIAMHLQPAAKSLGYQQGD 332 (374)
T ss_dssp HHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE-----TTHHHHHHHH-HHTTBCCBCSCSSCGGGSGGGGGGCCCTTS
T ss_pred HHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc-----CCHHHHHHHH-HHCCCccccCCCCccccChhhhhcCCccCC
Confidence 77788887764 55432 222222221111000 0122455555 567999998752110 0
Q ss_pred -------CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 402 -------EPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 402 -------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..+.+||++.. .+++++++++++|++++++.+
T Consensus 333 ~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~~ 372 (374)
T 3uwc_A 333 FPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEKH 372 (374)
T ss_dssp CHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 01579999877 799999999999999997653
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=226.79 Aligned_cols=306 Identities=13% Similarity=0.162 Sum_probs=203.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCc
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGV 156 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~ 156 (464)
.+|++..|..++++.+.+.+.+.+| ++ ++++++++++++..++.++ +++||.|+++.|+|..+...+... |+
T Consensus 32 ~~~~~~~g~~~l~~~l~~~la~~~g----~~--~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 104 (418)
T 2c81_A 32 AISGYWTGEESMERKFAKAFADFNG----VP--YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNV-NA 104 (418)
T ss_dssp STTSBCCSSCCHHHHHHHHHHHHHT----CS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TC
T ss_pred cccCcccCCHHHHHHHHHHHHHHhC----CC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHc-CC
Confidence 3477666755555555555554444 33 4666777789999999999 899999999999999998888876 99
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV- 235 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~- 235 (464)
+++.+++++ ++|.+|++.+++.+++ ++++|+++ ||||... ++++|.++|+++|+++|+||+|+.+.
T Consensus 105 ~~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~---~~~~i~~~~~~~~~~li~D~a~~~~~~ 171 (418)
T 2c81_A 105 LPVFVDVEA-DTYCIDPQLIKSAITD------KTKAIIPV---HLFGSMA---NMDEINEIAQEHNLFVIEDCAQSHGSV 171 (418)
T ss_dssp EEEEECBCT-TTCSBCHHHHGGGCCT------TEEEECCB---CCTTCCC---CHHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred EEEEEecCC-CCCCcCHHHHHHhhCC------CCeEEEEe---CCcCCcc---cHHHHHHHHHHCCCEEEEECcccccCc
Confidence 999999864 3678999999987753 78887765 5899874 57888899999999999999999754
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC--CcCCCCCccEEEEEEecCHHHHHHHHHhcccC----------
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL--SKDFSMPGFRVGMIYSNNERVVSAATKMSSFG---------- 303 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~--SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~---------- 303 (464)
+.+. .+..+ . .+++.|| ||.+|. | |+||++++++.+.+.+.......
T Consensus 172 ~~~~-----~~~~~-------------~-~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T 2c81_A 172 WNNQ-----RAGTI-------------G-DIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSEL 230 (418)
T ss_dssp ETTE-----ETTSS-------------S-SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGC
T ss_pred cCCE-----ecccc-------------c-ceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence 3322 11111 1 2567777 999995 8 99999996666655554332211
Q ss_pred ---CC------C--------hHHHHHHH-HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cCCc-cEE--
Q 037587 304 ---LV------S--------SQTQYLLS-RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL-KSNA-GLF-- 360 (464)
Q Consensus 304 ---~~------s--------~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~-g~f-- 360 (464)
.. . ...+.++. ..+. .+++..+..++.++++.+.|.++ |+++. ++++ +.+
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~ 303 (418)
T 2c81_A 231 MHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQ-------ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTY 303 (418)
T ss_dssp CTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCC
T ss_pred ccchhhccccccccCcCCCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCccccc
Confidence 00 0 11122211 1121 13444455556677888888887 78776 4555 222
Q ss_pred -EE-EecCcccccCChhHHHHHHHHHHHhcCeE---EeCCCCCCC---------------------------CC------
Q 037587 361 -CW-VDMRHLLVSNTFEAEKELWKKIIFEVGLN---ISPGSSCHC---------------------------NE------ 402 (464)
Q Consensus 361 -~~-~~l~~~~~~~~~~~~~~l~~~ll~~~gI~---v~pg~~f~~---------------------------~~------ 402 (464)
++ +.++.... .. ....++...|.+++||. ++++..... ..
T Consensus 304 ~~~~~~~~~~~~-~~-~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (418)
T 2c81_A 304 YGYVFRFDPVKF-GG-LNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERA 381 (418)
T ss_dssp SEEEEEECGGGT-TT-CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH
T ss_pred EEEEEEEccccc-cc-cCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHH
Confidence 22 66653100 00 11235667765444999 888752100 00
Q ss_pred -CCeEEEEeec-C-CHHHHHHHHHHHHHHHHhhC
Q 037587 403 -PGWFRICFAN-I-TEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 403 -~~~~Ris~~~-~-~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+.+||++.. . ++++++.++++|++++++.+
T Consensus 382 ~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 382 SGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp HHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred HhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence 1479999976 7 89999999999999987643
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=237.87 Aligned_cols=312 Identities=10% Similarity=0.092 Sum_probs=222.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC-----CC---CeEEEcCCCCCChhhhcc
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD-----PG---DAFLLPTPYYPGFDRDLK 151 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~-----~g---d~Vlv~~p~y~~~~~~~~ 151 (464)
|....|..++++.+++++.+.+| .+.+++++++|+|+++++..++.++.+ +| |.|+++.|+|..+...+.
T Consensus 99 ~~~~~~~~~l~~~~~~~la~~~g--~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~ 176 (497)
T 3mc6_A 99 PDVFPAVRKMESEVVSMVLRMFN--APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY 176 (497)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--CCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHhC--CCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH
Confidence 44445667888899998888876 223378999999999999999999865 46 899999999999988888
Q ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 152 WRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 152 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
.. |++++.+++++ +++.+|+++|++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|
T Consensus 177 ~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~ 245 (497)
T 3mc6_A 177 YF-GMKLRHVELDP-TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCL 245 (497)
T ss_dssp HS-CCEEEEECBCT-TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTT
T ss_pred Hc-CCeEEEEecCc-ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcc
Confidence 77 99999999875 3678999999988754 7899999999999999976 667888899999999999999
Q ss_pred cccccC--CC-CC-CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCC--
Q 037587 232 SGTVFD--SP-SS-SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLV-- 305 (464)
Q Consensus 232 ~~~~~~--~~-~~-~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~-- 305 (464)
+++... .. +. ..+.+. . ...+..+++.|++|.++ +|.++||++++++.+..........+..
T Consensus 246 ~~~~~~f~~~~~~~~~~~~~-~----------~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 313 (497)
T 3mc6_A 246 GSFIVSFMEKAGYKNLPLLD-F----------RVPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPAWTGGL 313 (497)
T ss_dssp THHHHGGGTTTTCCSCCCCS-T----------TSTTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTTCTTSC
T ss_pred hhhhhhhhhhhcccCCcccc-c----------cCCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccccccCCC
Confidence 864321 10 00 000110 1 02245677889999874 7888999999776554321111111100
Q ss_pred ----------C---hHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC--CCeee-cCCccEEEEEecCccc
Q 037587 306 ----------S---SQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA--GIRCL-KSNAGLFCWVDMRHLL 369 (464)
Q Consensus 306 ----------s---~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~-~~~~g~f~~~~l~~~~ 369 (464)
+ ..++.++...+... .+++..+.+.++++++.+.|.+. |+++. ++.++ ++++..+.
T Consensus 314 ~~~~~~~g~~~~~~~~a~~aal~~l~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~-~v~~~~~~-- 385 (497)
T 3mc6_A 314 YGSPTLAGSRPGAIVVGCWATMVNMGEN-----GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYS-VISFSSKT-- 385 (497)
T ss_dssp BCCSSSCSSCBHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSS-EEEEECTT--
T ss_pred cCCcCcccCCcchhHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCee-EEEEeCCC--
Confidence 0 23345554444332 34556667777888999999984 88876 45565 44455432
Q ss_pred ccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhCcc
Q 037587 370 VSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCNPQ 435 (464)
Q Consensus 370 ~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~~ 435 (464)
.+..++...|. ++||.++++.. +..+|++++..+++++++++++|++++++.+..
T Consensus 386 -----~~~~~l~~~L~-~~Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 386 -----LNIHELSDRLS-KKGWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp -----TTHHHHHHHHH-TTTCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred -----CCHHHHHHHHH-hCCEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 11234666664 67999886643 346899998778999999999999999887643
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=227.26 Aligned_cols=332 Identities=10% Similarity=0.045 Sum_probs=203.4
Q ss_pred CCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 33 HNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 33 ~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
.....+|||+.+. +++ +++.+.+++.+.. .....| .+..++++++++++.+.++ .
T Consensus 54 ~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~-------------~~~~~~---~~~~~~~~~la~~l~~~~~-----~ 112 (453)
T 2cy8_A 54 VDGNVYLDFFGGHGALVLGHGHPRVNAAIAEAL-------------SHGVQY---AASHPLEVRWAERIVAAFP-----S 112 (453)
T ss_dssp TTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHH-------------TTTCSS---CSSCHHHHHHHHHHHHHCT-----T
T ss_pred CCCCEEEECcccHhhcccCCCCHHHHHHHHHHH-------------HhCCCC---CCCCHHHHHHHHHHHhhCC-----C
Confidence 3455789998875 433 4566777766642 111123 2457899999999987642 5
Q ss_pred CCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCCCChhhhcccC----------CCcE------EEEEecCCCCCc
Q 037587 109 PNKLVLTAGSTAANETLMFC---LADPGDAFLLPTPYYPGFDRDLKWR----------PGVE------IVPIHCSSSNGF 169 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~~~----------~g~~------~~~v~~~~~~~~ 169 (464)
+++|++|+|+++++..++++ +.+ ++.|++.+|+|+++...+... .|+. ++.++.
T Consensus 113 ~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------ 185 (453)
T 2cy8_A 113 IRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP------ 185 (453)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECT------
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC------
Confidence 78999999999999999988 665 467888889998765433211 1221 223321
Q ss_pred ccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchh
Q 037587 170 RITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIM 247 (464)
Q Consensus 170 ~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~ 247 (464)
.|+++|++.+++. ++++++ ++++| +||||.++ +.+++++|.++|++||+++|+||+|.++ ..+. . .. .
T Consensus 186 -~d~~~le~~l~~~---~~~~~~-vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~--~-~~-~ 255 (453)
T 2cy8_A 186 -DDIEGMREVFANH---GSDIAA-FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN--H-GM-Q 255 (453)
T ss_dssp -TCHHHHHHHHHHH---GGGEEE-EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT--T-HH-H
T ss_pred -CCHHHHHHHHHhc---CCCEEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc--h-hh-h
Confidence 3789999988742 125655 55666 47799765 6999999999999999999999999975 3222 1 11 1
Q ss_pred hhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-------hcccCCCChHHHHHHHHHcCC-
Q 037587 248 EAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-------MSSFGLVSSQTQYLLSRMLSD- 319 (464)
Q Consensus 248 ~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~- 319 (464)
+... .... +.||||+++ +|+|+||+++++ .+.+.+.. ....+..+++++.++.++++.
T Consensus 256 ~~~~---------~~~d---i~s~sK~l~-~G~~~G~v~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~ 321 (453)
T 2cy8_A 256 ALLD---------VQPD---LTCLAKASA-GGLPGGILGGRE-DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTI 321 (453)
T ss_dssp HHHT---------CCCS---EEEEEGGGG-TTSSCEEEEECH-HHHTTSSSCC---------CCCCHHHHHHHHHHHHHH
T ss_pred HHhC---------CCCc---EEEEChhhh-CCcceEEEechH-HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHH
Confidence 1111 1122 339999998 699999999954 44443322 112234677888887776654
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh----CCCee-ecCCccEEEEEecCc-----c-----cc---cCChhHHHHHH
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKV----AGIRC-LKSNAGLFCWVDMRH-----L-----LV---SNTFEAEKELW 381 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~-~~~~~g~f~~~~l~~-----~-----~~---~~~~~~~~~l~ 381 (464)
. . +...+.++++++++.+.|++ +++.. .++.+ .|+|++++. . .. ........+++
T Consensus 322 ~-~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 394 (453)
T 2cy8_A 322 L-E-----DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRF-SGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMR 394 (453)
T ss_dssp H-H-----TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCT-TEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHH
T ss_pred h-h-----hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEee-eEEEEEEeccccccccccccccccccccHHHHHHHH
Confidence 1 0 11222333344444444433 34433 44554 588999874 1 00 00112234577
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 382 KKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 382 ~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..++ ++||.+.|+ +.+|+++. .+++++++++++|++++++..
T Consensus 395 ~~l~-~~Gv~v~~~--------~~~~l~~~-~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 395 MALI-LEGVDIGGR--------GSVFLSAQ-HEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp HHHH-HTTEECBTT--------TEEECCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HCCeEEeCC--------CCEEeecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 7776 579999653 23777644 699999999999999988764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=225.63 Aligned_cols=338 Identities=15% Similarity=0.099 Sum_probs=211.5
Q ss_pred CCCCCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||+.+. +++ +++.+.+++.+... ....|. +..++++.+++.+.+..+
T Consensus 49 ~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~-------------~~~~~~---~~~~~~~~l~~~la~~~~-- 110 (434)
T 2epj_A 49 YLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALA-------------RGWLYG---APGEAEVLLAEKILGYVK-- 110 (434)
T ss_dssp EEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH-------------TCSCCS---SCCHHHHHHHHHHHHHHC--
T ss_pred EEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHH-------------hCCCCC---CCCHHHHHHHHHHHHhCC--
Confidence 33334456789998875 444 45667777666421 111121 234555556666555432
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCCCChhhhccc-------------CCCc------EEEEEe
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFC---LADPGDAFLLPTPYYPGFDRDLKW-------------RPGV------EIVPIH 162 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~~-------------~~g~------~~~~v~ 162 (464)
.+++|++|+|+++++..++++ +. +++.|++.+|+|+++...+.. ..|+ .++.++
T Consensus 111 ---~~~~v~~~~sgseA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~ 186 (434)
T 2epj_A 111 ---RGGMIRFVNSGTEATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTP 186 (434)
T ss_dssp ---TTCEEEEESSHHHHHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEE
T ss_pred ---CCCEEEEeCCHHHHHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecC
Confidence 468999999999999999987 44 467888889999876543211 1132 244554
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
. .|++.|++.+++. +.++++ ++++| +||||.++ +.+.+++|.++|+++|+++|+||+|.++ ..+.
T Consensus 187 ~-------~d~~~le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~- 253 (434)
T 2epj_A 187 Y-------NDVEALERVFAEY---GDRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL- 253 (434)
T ss_dssp T-------TCHHHHHHHHHHH---GGGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST-
T ss_pred C-------CCHHHHHHHHHhC---CCCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc-
Confidence 3 2789999988752 125554 55566 57799876 6999999999999999999999999975 2222
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-----cccCCCChHHHHHHHH
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-----SSFGLVSSQTQYLLSR 315 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-----~~~~~~s~~~q~~~~~ 315 (464)
. .. .+... .... +.||||.+| +|+|+||++++ +.+.+.+... ...+..+++++.++.+
T Consensus 254 -~-~~-~~~~~---------~~~d---i~s~sK~l~-~G~~~G~v~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a 316 (434)
T 2epj_A 254 -E-GA-QGYFN---------IEGD---IIVLGKIIG-GGFPVGAVAGS-REVMSLLTPQGKVFNAGTFNAHPITMAAGLA 316 (434)
T ss_dssp -T-HH-HHHHT---------CCCS---EEEEEGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred -c-hh-hHHhC---------CCCC---eeeecchhc-CCcceeeeeec-HHHHHhhccCCCcccCCCCCcCHHHHHHHHH
Confidence 1 11 11111 1122 349999999 59999999995 4454443331 1123467788877777
Q ss_pred HcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCee-ecCCccEEEEEecCccc-c------cCChhHHHHHHHH
Q 037587 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRC-LKSNAGLFCWVDMRHLL-V------SNTFEAEKELWKK 383 (464)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~-~~~~~g~f~~~~l~~~~-~------~~~~~~~~~l~~~ 383 (464)
+++..+ + +...+.++++++++.+.|+++ ++.. .++. |.|+|++++... . ........+++..
T Consensus 317 ~l~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (434)
T 2epj_A 317 TLKALE---E--EPVYSVSREAAKALEEAASEVLDRTGLPYTINRV-ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEE 390 (434)
T ss_dssp HHHHHH---H--SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHH---h--cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEe-eeEEEEEEeCCCcccchhccccCHHHHHHHHHH
Confidence 765321 1 123344445555555555543 5532 3444 458899886410 0 0011223457777
Q ss_pred HHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 384 IIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 384 ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
++ ++||.+.||.. .++|+++. .+++++++++++|++++++.
T Consensus 391 l~-~~Gv~v~~~~~------~~~~~~~~-~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 391 ML-RRGVFIAPSNL------EAVFTGLP-HQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp HH-HTTEECCSSTT------SCEECCTT-CSHHHHHHHHHHHHHHHHHH
T ss_pred HH-HCCeEEeccCC------CcEEEecc-CCHHHHHHHHHHHHHHHHHH
Confidence 65 67999998742 24777754 59999999999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=222.89 Aligned_cols=331 Identities=14% Similarity=0.087 Sum_probs=210.3
Q ss_pred CCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 037587 33 HNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFD 108 (464)
Q Consensus 33 ~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 108 (464)
.....+|||+.+. +++ +++.+.+++.+..+ ....|. +..++++.+++.+.+.++ .
T Consensus 49 ~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-------------~~~~~~---~~~~~~~~l~~~l~~~~~-----~ 107 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILGHAHPKVLARVRETLE-------------RGLTFG---APSPLEVALAKKVKRAYP-----F 107 (424)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH-------------TCSCCS---SCCHHHHHHHHHHHHHCT-----T
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hCCCCC---CCCHHHHHHHHHHHHhCC-----C
Confidence 3455689998875 444 45677777666421 111221 335667777777766532 4
Q ss_pred CCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCCCChhhhccc-------------CCCc------EEEEEecCCC
Q 037587 109 PNKLVLTAGSTAANETLMFC---LADPGDAFLLPTPYYPGFDRDLKW-------------RPGV------EIVPIHCSSS 166 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~~-------------~~g~------~~~~v~~~~~ 166 (464)
+++|++++|+++++..++++ +. +++.|++.+|+|+++...+.. ..|+ .++.++.
T Consensus 108 ~~~v~~~~~g~ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~--- 183 (424)
T 2e7u_A 108 VDLVRFVNSGTEATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY--- 183 (424)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT---
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC---
Confidence 68999999999999999986 54 457899999999886543211 1132 2444442
Q ss_pred CCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCC-CCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 167 NGFRITISALENAYQQAQTLNLKVKGVLITNPSNP-LGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 167 ~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NP-tG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
.|++.|++.+++. +.+++ +++++|+|+ ||.++ +.+.+++|.++ +++|+++|+||+|.++ ..+. .
T Consensus 184 ----~d~~~le~~l~~~---~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~--~-- 249 (424)
T 2e7u_A 184 ----NDPEGLREVLKRR---GEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAF--G-- 249 (424)
T ss_dssp ----TCHHHHHHHHHHH---GGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSST--T--
T ss_pred ----CCHHHHHHHHHhC---CCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccch--h--
Confidence 2789999888642 12454 566678665 89765 78899999999 9999999999999975 2222 1
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-----cccCCCChHHHHHHHHHcCC
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-----SSFGLVSSQTQYLLSRMLSD 319 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-----~~~~~~s~~~q~~~~~~l~~ 319 (464)
...+... .... +.||||++| +|+|+||+++++ .+.+.+... ...+..+++++.++.++++.
T Consensus 250 ~~~~~~~---------~~~d---i~s~sK~l~-~G~~~G~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~ 315 (424)
T 2e7u_A 250 GATELLG---------LKPD---LVTLGKILG-GGLPAAAYAGRR-EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLEL 315 (424)
T ss_dssp HHHHHHT---------CCCS---EEEECGGGG-TTSSCEEEEECH-HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhC---------CCcc---hhhhhhhhh-CCcceEEEEEcH-HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHH
Confidence 1111211 1122 239999999 699999999954 454444331 11234677888888777753
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh----CCCee-ecCCccEEEEEecCccc-c------cCChhHHHHHHHHHHHh
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKV----AGIRC-LKSNAGLFCWVDMRHLL-V------SNTFEAEKELWKKIIFE 387 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~-~~~~~g~f~~~~l~~~~-~------~~~~~~~~~l~~~ll~~ 387 (464)
.+ + .++..+.++++++++.+.|++ +++.. .++.| .|+|++++... . ........+++..++ +
T Consensus 316 ~~---~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 389 (424)
T 2e7u_A 316 LE---E-NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVG-SMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-D 389 (424)
T ss_dssp HH---H-CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEET-TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-T
T ss_pred HH---h-ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeec-eEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-H
Confidence 21 1 123344455555555555554 35532 34444 58999987411 0 001122335777766 6
Q ss_pred cCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 388 VGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 388 ~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+||.+.||.. ..+|+++. .+++++++++++|++++
T Consensus 390 ~Gv~v~~~~~------~~~~~~~~-~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 390 RGIYWPPSNF------EAAFLSVA-HREEDVEKTLEALRKAL 424 (424)
T ss_dssp TTEECCSSSS------SCEECCTT-CCHHHHHHHHHHHHHHC
T ss_pred CCeEEeccCC------CceEeecc-CCHHHHHHHHHHHHHhC
Confidence 8999998752 24777754 69999999999998763
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-26 Score=230.14 Aligned_cols=292 Identities=11% Similarity=0.069 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCe---EEEcCCCCCChhh----hcccCCCcEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDA---FLLPTPYYPGFDR----DLKWRPGVEIV 159 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~---Vlv~~p~y~~~~~----~~~~~~g~~~~ 159 (464)
.++++.++++++ +++++|++|+|+++++.+++.+++++|+. |+++.|+|++... .++.. |+++.
T Consensus 114 ~~l~~~la~~~g--------~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~-G~~~~ 184 (465)
T 3e9k_A 114 ESIVGLMKDIVG--------ANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLH-GLNIE 184 (465)
T ss_dssp HHHHGGGHHHHT--------CCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHT-TCCHH
T ss_pred HHHHHHHHHHcC--------CCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHc-CCcce
Confidence 567888888775 67899999999999999999999877655 9999999987433 44445 77642
Q ss_pred -----EEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 160 -----PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 160 -----~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
..+. ++++.+|++++++.+++. ++++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.
T Consensus 185 ~~~v~~~~~--~~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~- 255 (465)
T 3e9k_A 185 ESMRMIKPR--EGEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAV- 255 (465)
T ss_dssp HHEEEECCC--TTCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT-
T ss_pred eeeEEEecC--CCCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhc-
Confidence 2233 346778999999999742 237899999999999999987 56788889999999999999973
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-hcc------------
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-MSS------------ 301 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-~~~------------ 301 (464)
+.. + .++..+ +..+++.|++|.++....++|+++++++.+ +.+.. ...
T Consensus 256 --g~~--~-~~~~~~-------------~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 316 (465)
T 3e9k_A 256 --GNV--E-LYLHDW-------------GVDFACWCSYKYLNAGAGGIAGAFIHEKHA-HTIKPALVGWFGHELSTRFKM 316 (465)
T ss_dssp --TTS--C-CCHHHH-------------TCCEEEECSSSTTCCCTTCCCEEEECGGGT-TTSCCSSCCGGGBCHHHHTTC
T ss_pred --CCc--C-Cchhhc-------------CCCEEEECcccccccCCCceEEEEEcHHHH-hhcCCcccCccCCCCCccccc
Confidence 222 1 222222 455788999999931223789998854432 11110 000
Q ss_pred --------------cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCeeecCC
Q 037587 302 --------------FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV-----------AGIRCLKSN 356 (464)
Q Consensus 302 --------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----------~g~~~~~~~ 356 (464)
.++.+.+...++.+++.... ...+++.++.+.+.++++.+.|++ .|+++..+.
T Consensus 317 ~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~ 394 (465)
T 3e9k_A 317 DNKLQLIPGVCGFRISNPPILLVCSLHASLEIFK--QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPS 394 (465)
T ss_dssp CSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCS
T ss_pred CCCcCcCCChHHhccCCccHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCC
Confidence 01344444555555544211 112677778888888889998887 578887665
Q ss_pred ----ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHH
Q 037587 357 ----AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-AN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 357 ----~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~ 430 (464)
.|.++++.++. ... ++...|. ++||.++.. .++++|+++ .. .++++++++++.|+++++
T Consensus 395 ~~~~~g~~~~~~~~~--~~~------~l~~~L~-~~Gi~v~~~------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~ 459 (465)
T 3e9k_A 395 HVEERGCQLTITFSV--PNK------DVFQELE-KRGVVCDKR------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILD 459 (465)
T ss_dssp SGGGBCSCEEEEECC--TTC------CHHHHHH-TTTEECEEE------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHT
T ss_pred CHhhcccEEEEEecC--CHH------HHHHHHH-HCCEEEecC------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHH
Confidence 25588888862 222 2556654 679998732 367999998 34 689999999999999986
Q ss_pred hh
Q 037587 431 SC 432 (464)
Q Consensus 431 ~~ 432 (464)
+.
T Consensus 460 ~~ 461 (465)
T 3e9k_A 460 SA 461 (465)
T ss_dssp C-
T ss_pred hc
Confidence 54
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=219.26 Aligned_cols=293 Identities=13% Similarity=0.064 Sum_probs=204.2
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCCCChhhhcccCCCcEEE
Q 037587 83 YHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL---ADPGDAFLLPTPYYPGFDRDLKWRPGVEIV 159 (464)
Q Consensus 83 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~ 159 (464)
.....+++++++++++ .+ ++++|+|+++++..++.++ +++||+|+++.|+|+.+...+... |++++
T Consensus 31 ~~~~~~l~~~la~~~~--------~~--~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~ 99 (375)
T 2fnu_A 31 GKRSLLFEEALCEFLG--------VK--HALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYTPV 99 (375)
T ss_dssp SHHHHHHHHHHHHHHT--------CS--EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCEEE
T ss_pred ChHHHHHHHHHHHHhC--------CC--eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHC-CCEEE
Confidence 3456899999999985 33 8999999999999999999 899999999999999998888776 99999
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 160 PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 160 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
.+++++++ .+|++.+++.+.+ ++++|++++| ||.+.+ +++|.++|+++|+++|+||+|+...+...
T Consensus 100 ~~~~~~~~--~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~~ 165 (375)
T 2fnu_A 100 FAGIKNDG--NIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQN 165 (375)
T ss_dssp ECCBCTTS--SBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETT
T ss_pred EeccCCCC--CCCHHHHHhhcCc------CceEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEEECccccCCeECC
Confidence 99987532 6899999887753 7888888866 999876 67788889899999999999984322111
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCC--cCCCCCccEEEEEEe-cCHHHHHHHHHhccc--------------
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS--KDFSMPGFRVGMIYS-NNERVVSAATKMSSF-------------- 302 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S--K~~g~~GlRiG~l~~-~~~~~~~~~~~~~~~-------------- 302 (464)
.. +. ..+ .+++.||| |.+|. | +|++++ +++.+.+.+......
T Consensus 166 ----~~----~~---------~~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2fnu_A 166 ----KK----VG---------GFA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKS 224 (375)
T ss_dssp ----EE----TT---------SSS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESS
T ss_pred ----ee----cc---------ccC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCcccccccccccc
Confidence 11 11 112 36778888 99984 7 688777 446565555443211
Q ss_pred -C---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC----Cc-cEEEEEecCcccccC
Q 037587 303 -G---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS----NA-GLFCWVDMRHLLVSN 372 (464)
Q Consensus 303 -~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~~-g~f~~~~l~~~~~~~ 372 (464)
. .++.+...++...+ + ++++..+.++++++++.+.|+++ |+.+.++ .+ ++++|+.++...
T Consensus 225 ~~~~~~~~~~~~a~~~~~~---~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 294 (375)
T 2fnu_A 225 IGHNFRLNEIQSALGLSQL---K----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF--- 294 (375)
T ss_dssp CCCBCCCCHHHHHHHHHHH---T----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG---
T ss_pred ccccCCCCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc---
Confidence 1 12333222222221 1 24556667777888999999987 7777654 12 345577776320
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCC-------CC-------CC-----CCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSS-------CH-------CN-----EPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~-------f~-------~~-----~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.....++...| .++||.++.+.. |+ .. ..+++||+++. .++++++.++++|++++++.
T Consensus 295 -~~~~~~l~~~L-~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 295 -FTCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp -GGGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHH-HHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 00223466666 567999983211 10 00 02579999986 68999999999999998765
Q ss_pred C
Q 037587 433 N 433 (464)
Q Consensus 433 ~ 433 (464)
+
T Consensus 373 ~ 373 (375)
T 2fnu_A 373 K 373 (375)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=226.70 Aligned_cols=287 Identities=16% Similarity=0.169 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhccc----CCCcEEEEEec
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKW----RPGVEIVPIHC 163 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~~g~~~~~v~~ 163 (464)
..++++++.+.+..| .+++++++|+++++..++.+++++||.|+++.|+|+++...+.. . |++++.++.
T Consensus 81 p~~~~l~~~la~~~g------~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-g~~~~~v~~ 153 (414)
T 3ndn_A 81 PTVSVFEERLRLIEG------APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRW-GVQTVFVDG 153 (414)
T ss_dssp HHHHHHHHHHHHHHT------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEECT
T ss_pred hHHHHHHHHHHHHHC------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHc-CcEEEEeCC
Confidence 344444444444333 35788999999999999999999999999999999987766543 5 999999986
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|....+..+
T Consensus 154 ~-------d~~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~---- 213 (414)
T 3ndn_A 154 D-------DLSQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQG---- 213 (414)
T ss_dssp T-------CHHHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCC----
T ss_pred C-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCCc----
Confidence 4 78999888754 7899999999999999976 77788899999999999999984322111
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh-cccC-CCChHHHHHHHHHcCCc
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM-SSFG-LVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~-~~~~-~~s~~~q~~~~~~l~~~ 320 (464)
. .+ +..+++.|+||.+|.+| +|+|+++++++.+.+.++.. ..+. ..++....++...++.
T Consensus 214 ~---~~-------------g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~- 276 (414)
T 3ndn_A 214 F---PL-------------GVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLET- 276 (414)
T ss_dssp G---GG-------------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGG-
T ss_pred h---hc-------------CCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Confidence 1 11 34578999999999778 89999999665554344322 2222 2444444444433332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eecCC----------------ccEEEEEecCcccccCChhHHHHHHH
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR-CLKSN----------------AGLFCWVDMRHLLVSNTFEAEKELWK 382 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~----------------~g~f~~~~l~~~~~~~~~~~~~~l~~ 382 (464)
+..+.+...+++..+.+.|+++ ++. +..|. .|.++++.++.... .......+++.
T Consensus 277 ------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~-~~~~~~~~~~~ 349 (414)
T 3ndn_A 277 ------LAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED-VAKQRAFEVLD 349 (414)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG-GHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc-ccHHHHHHHHH
Confidence 3344455566777888888776 332 22221 35689999864200 00112223444
Q ss_pred HHHHhcCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 383 KIIFEVGLNISPGSSCHC---------------------NEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 383 ~ll~~~gI~v~pg~~f~~---------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
.+ +..++.+.+|..+.. ..++++|||++. |+.+.+++.|++++
T Consensus 350 ~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~---e~~~dli~dl~~al 413 (414)
T 3ndn_A 350 KM-RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL---EDTDDLIADIDRAL 413 (414)
T ss_dssp HC-SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred hC-ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence 43 345777777765432 135789999995 44556666666654
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=217.68 Aligned_cols=280 Identities=16% Similarity=0.164 Sum_probs=191.7
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~ 160 (464)
...++++.++++++ .+ +.++++++++++..++.+++++||.|+++.|+|+++...+ ... |++++.
T Consensus 66 ~~~~l~~~la~~~g--------~~--~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~~ 134 (398)
T 1gc0_A 66 TLNLLEARMASLEG--------GE--AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLRH 134 (398)
T ss_dssp HHHHHHHHHHHHHT--------CS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGG-TCEEEE
T ss_pred HHHHHHHHHHHHhC--------CC--cEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHc-CCEEEE
Confidence 45678888888775 22 4455555579999999999999999999999999876654 445 999988
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+ |++.+++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|....+. .
T Consensus 135 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~-~- 196 (398)
T 1gc0_A 135 VDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ-R- 196 (398)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC-C-
T ss_pred ECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccC-C-
Confidence 8753 78899888754 7899999999999999985 788899999999999999999864332 1
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHhccc---CCCChHHHHHHHHH
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKMSSF---GLVSSQTQYLLSRM 316 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~ 316 (464)
.+ .+ +.++++.|+||.+|.+|.|+ ||++++++.+.+.+...... +..+++.+.++...
T Consensus 197 ----~~-~~-------------~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
T 1gc0_A 197 ----PL-EL-------------GADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRG 258 (398)
T ss_dssp ----GG-GG-------------TCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHH
T ss_pred ----ch-hh-------------CceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhc
Confidence 11 11 45688999999999899998 99998655454344433222 34677777777666
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-C--------------eeec----CCccEEEEEecCcccccCChhHH
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-I--------------RCLK----SNAGLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~--------------~~~~----~~~g~f~~~~l~~~~~~~~~~~~ 377 (464)
++. +....+.+.++...+.+.|.+++ + .+.. ..++ ++.++++..
T Consensus 259 l~~-------~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~--------- 321 (398)
T 1gc0_A 259 IKT-------LNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGG-MIAFELKGG--------- 321 (398)
T ss_dssp HTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTT-EEEEEETTH---------
T ss_pred cch-------HHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCce-EEEEEECCC---------
Confidence 653 22333444555566666666541 1 1111 2355 555676521
Q ss_pred HHHHHHHHHhcCeEEeC---CCCCC------------C---------CCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 378 KELWKKIIFEVGLNISP---GSSCH------------C---------NEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~p---g~~f~------------~---------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
.+....++.+.|+.++. |+... . ..++++|||++. .++++++.+.++|+++
T Consensus 322 ~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 322 IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 12345667788888765 32100 0 114799999987 4566777777776653
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=221.88 Aligned_cols=340 Identities=12% Similarity=0.063 Sum_probs=203.2
Q ss_pred CCCCCCCCceEEeeccc--ccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAE--NQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||++.+. |++ .+|.+.+++.+.... .....|+ .+.+..+++.+.+..+
T Consensus 46 ~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~-----------~~~~~~~-----~~~~~~la~~l~~~~~-- 107 (429)
T 4e77_A 46 YLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER-----------GLSFGAP-----TEMEVKMAQLVTDLVP-- 107 (429)
T ss_dssp EEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT-----------CSCCSSC-----CHHHHHHHHHHHHHST--
T ss_pred EEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHh-----------CcccCCC-----CHHHHHHHHHHHhhCC--
Confidence 33344566789998775 444 356677766654211 0111232 2444445555444322
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc-------------------EEEEEec
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV-------------------EIVPIHC 163 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~-------------------~~~~v~~ 163 (464)
.+++|++|+|+++++..+++... .+++.|++.+++|+++...+....+. .+..++.
T Consensus 108 ---~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T 4e77_A 108 ---TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY 184 (429)
T ss_dssp ---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT
T ss_pred ---CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC
Confidence 47899999999999999998543 35678999999998765422111011 1122211
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM--THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~--s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
.|+++|++.+++. +.++ ++++++|+||+|-.+ +.+.+++|.++|+++|+++|+||+|.++ ..+.
T Consensus 185 -------~d~~~le~~l~~~---~~~~-~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~-- 250 (429)
T 4e77_A 185 -------NDLASVRQAFEQY---PQEV-ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL-- 250 (429)
T ss_dssp -------TCHHHHHHHHHHS---TTTE-EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT--
T ss_pred -------CCHHHHHHHHHhc---CCCE-EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc--
Confidence 1789999888641 2244 456678876655433 3455999999999999999999999975 2222
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-----hcccCCCChHHHHHHHHH
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-----MSSFGLVSSQTQYLLSRM 316 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~~~~ 316 (464)
. ...+... .... +.||||.+| +|+|+||++++ +.+.+.+.. ....++.+++++.++.++
T Consensus 251 ~--~~~~~~~---------~~pd---i~t~sK~~~-~G~~~G~~~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aa 314 (429)
T 4e77_A 251 A--GAQDYYH---------VIPD---LTCLGKIIG-GGMPVGAFGGR-REVMNALAPTGPVYQAGTLSGNPIAMAAGFAC 314 (429)
T ss_dssp T--CHHHHTT---------CCCS---EEEEEGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHH
T ss_pred c--hHHHhcC---------CCCC---eeeeccccc-CCCCeEEEEEC-HHHHHHhccCCCccccCCCCCCHHHHHHHHHH
Confidence 1 1111211 1122 349999999 89999999994 445444432 122235778888887777
Q ss_pred cC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccC--------ChhHHHHHHHHHH
Q 037587 317 LS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN--------TFEAEKELWKKII 385 (464)
Q Consensus 317 l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~--------~~~~~~~l~~~ll 385 (464)
++ +.++ .++.++..+..++.|.+.+..+++....+..|+|+|++++...... ......+++..++
T Consensus 315 l~~~~~~~~----~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 390 (429)
T 4e77_A 315 LTEISQVGV----YETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLML 390 (429)
T ss_dssp HHHHTSTTH----HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCH----HHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHH
Confidence 65 3332 3333333333334444444555554444445679999987531100 1112245677765
Q ss_pred HhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 386 FEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 386 ~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
++||.++|+.. ..+|+++. .+++++++++++|++++++
T Consensus 391 -~~Gi~v~~~~~------~~~~~~~~-~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 391 -EEGVYLAPSAF------EAGFMSLA-HSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp -HTTEECCSSTT------SCEECCTT-CCHHHHHHHHHHHHHHHTT
T ss_pred -HCCeEEeecCC------CCEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 56999998742 34677654 5999999999999998864
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=230.41 Aligned_cols=320 Identities=14% Similarity=0.190 Sum_probs=203.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC-----C----CeEEEcCCCCCChhhh
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADP-----G----DAFLLPTPYYPGFDRD 149 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~-----g----d~Vlv~~p~y~~~~~~ 149 (464)
.|.+..+..+|+++++++++ .+++++|+|+++++..++.+++++ | |.|++..+.|..+...
T Consensus 69 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~ 138 (467)
T 2oqx_A 69 AYSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred eeccCchhHHHHHHHHHHhC----------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhh
Confidence 57766677899999999984 368999999999999999999888 8 9988774333323333
Q ss_pred cccCCCcEEEEEec----CCC----CCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHHhh
Q 037587 150 LKWRPGVEIVPIHC----SSS----NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL-GTAMTHQELNHLINFSKS 220 (464)
Q Consensus 150 ~~~~~g~~~~~v~~----~~~----~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPt-G~~~s~~~l~~i~~~~~~ 220 (464)
.... |..++.... +.. ..+.+|+++|++++++.. .+++++|++++|+||| |.+++.+++++|.++|++
T Consensus 139 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~ 215 (467)
T 2oqx_A 139 SQIN-GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHT-TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred hhcc-CcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 3333 665554321 111 235689999999997521 1368899999999998 899999999999999999
Q ss_pred CCeEEEEeccccc----------cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC-ccEEEEEEecC
Q 037587 221 KRIHIVSDEIYSG----------TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP-GFRVGMIYSNN 289 (464)
Q Consensus 221 ~~~~lI~Deay~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~-GlRiG~l~~~~ 289 (464)
||+++|+|+++.. ..+.+. +...+..+.. ...+ +++.|+||.+|++ | ||+++++
T Consensus 216 ~gi~li~D~a~~~e~~~~~~~~~~~~~g~-----~~~~~~~~~~-----~~~d--~~~~s~sK~~g~~~G---g~~~~~~ 280 (467)
T 2oqx_A 216 YDIPVVMDSARFAENAYFIKQREAEYKDW-----TIEQITRETY-----KYAD--MLAMSAKKDAMVPMG---GLLCMKD 280 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTS-----CHHHHHHHHG-----GGCS--EEEEESSSTTCCSSC---EEEEECS
T ss_pred cCCEEEEEchhhhhhhhhcccccccccCc-----cHHHHhhhhh-----ccCC--eEEEecccccCCCCc---eEEEecC
Confidence 9999999965532 112222 2222210000 0112 3478999999877 5 8888865
Q ss_pred H---HHHHHHHHhc--c-----cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccE
Q 037587 290 E---RVVSAATKMS--S-----FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGL 359 (464)
Q Consensus 290 ~---~~~~~~~~~~--~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 359 (464)
+ .....++... . +...+.....++...+. .++. ++..+...++++++.+.|++.|+++. +.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~--~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~ 354 (467)
T 2oqx_A 281 DSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY--DGMN---LDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGH 354 (467)
T ss_dssp GGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH--HTTC---HHHHHHHHHHHHHHHHHHHHTTCCEE-EECSS
T ss_pred hhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhH--hhhh---HHHHHHHHHHHHHHHHHHHHCCCeee-cCCce
Confidence 5 2222232221 1 11122222222222211 1111 12223345667788888888788877 66778
Q ss_pred EEEEecCc---ccccCChhHHHHHHHHHHHhcCeEEeCCCCC--CC---------CCCCeEEEEeec--CCHHHHHHHHH
Q 037587 360 FCWVDMRH---LLVSNTFEAEKELWKKIIFEVGLNISPGSSC--HC---------NEPGWFRICFAN--ITEETLQVALQ 423 (464)
Q Consensus 360 f~~~~l~~---~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f--~~---------~~~~~~Ris~~~--~~~e~l~~~l~ 423 (464)
++|++++. ......+ ...+++..|+.++||.+.|+..| +. ...+++|++++. .++++++++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~ 433 (467)
T 2oqx_A 355 AAFVDAGKLLPHIPADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIE 433 (467)
T ss_dssp CEEEEHHHHSTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHH
T ss_pred EEEEechhhcccCCcccc-cHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHH
Confidence 99998853 1111111 12345777757889999985532 11 013789999984 58999999999
Q ss_pred HHHHHHHhhC
Q 037587 424 RIKVFAQSCN 433 (464)
Q Consensus 424 ~l~~~l~~~~ 433 (464)
+|++++++.+
T Consensus 434 ~l~~~l~~~~ 443 (467)
T 2oqx_A 434 AFKHVKENAA 443 (467)
T ss_dssp HHHHHHHSGG
T ss_pred HHHHHHhhhh
Confidence 9999998754
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=221.16 Aligned_cols=278 Identities=14% Similarity=0.142 Sum_probs=190.9
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~ 160 (464)
...+|++++|++++ .+ ++++++++++++..++.+++++||.|+++.|+|+++... ++.. |++++.
T Consensus 60 ~~~~l~~~la~~~g--------~~--~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~-g~~~~~ 128 (389)
T 3acz_A 60 TVEQFEEMVCSIEG--------AA--GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDL 128 (389)
T ss_dssp HHHHHHHHHHHHHT--------CS--EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHhC--------CC--eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CCEEEE
Confidence 35688999998875 23 566666777999999999999999999999999976655 3545 999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++. .|++++++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+ ..
T Consensus 129 v~~-------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~-~~- 190 (389)
T 3acz_A 129 IDT-------SDVEKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCF-LK- 190 (389)
T ss_dssp ECT-------TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-CC-
T ss_pred ECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-cC-
Confidence 885 278898887754 7899999999999999986 77888889999999999999986432 12
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHhcc-cC-CCChHHHHHHHHHc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKMSS-FG-LVSSQTQYLLSRML 317 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~~~-~~-~~s~~~q~~~~~~l 317 (464)
++ .+ +.++++.|+||.+|.+|.|+ ||++++++.+.+.+..... ++ ..++..+.++...+
T Consensus 191 ----~~-~~-------------~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l 252 (389)
T 3acz_A 191 ----PL-EL-------------GADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGM 252 (389)
T ss_dssp ----GG-GT-------------TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred ----cc-cc-------------CCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 11 11 45688999999999899998 9999977344444443332 22 34566666666666
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC---------------Ceee----cCCccEEEEEecCcccccCChhHHH
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG---------------IRCL----KSNAGLFCWVDMRHLLVSNTFEAEK 378 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---------------~~~~----~~~~g~f~~~~l~~~~~~~~~~~~~ 378 (464)
+.. ....+...+....+.+.|++++ +.+. ...++ ++.+.++. .
T Consensus 253 ~~l-------~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~-~~~~~l~~---------~- 314 (389)
T 3acz_A 253 KTL-------PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGS-TFLFEMKS---------F- 314 (389)
T ss_dssp TTH-------HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEESS---------H-
T ss_pred cHH-------HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCe-EEEEEECC---------H-
Confidence 542 1222333344455555555531 1111 11244 66677752 0
Q ss_pred HHHHHHHHhcCeEEeC---C------CCCCC---------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 379 ELWKKIIFEVGLNISP---G------SSCHC---------------NEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 379 ~l~~~ll~~~gI~v~p---g------~~f~~---------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
+....++.+.||.+++ | ..+.. ..++++|||++. ++.+.+++.|.++++
T Consensus 315 ~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~ 387 (389)
T 3acz_A 315 EAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALE 387 (389)
T ss_dssp HHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 1345566778998876 3 22210 115799999985 366777777777764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-24 Score=217.21 Aligned_cols=282 Identities=15% Similarity=0.144 Sum_probs=192.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
..+++++++++++ .+ +.|++++|+ +++..++.+++++||.|+++.|+|+++... +... |++++.+
T Consensus 116 ~~~l~~~lA~l~g--------~~-~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~v~~v 184 (445)
T 1qgn_A 116 TVVLEEKISALEG--------AE-STLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATVI 184 (445)
T ss_dssp HHHHHHHHHHHHT--------CS-EEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC--------CC-cEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHc-CCEEEEe
Confidence 3588888888875 33 556666665 999999999999999999999999876653 4455 9999998
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCce-EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKV-KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~-~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+.+ |++++++++++ ++ ++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....+ ..
T Consensus 185 ~~~-------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~-~~- 246 (445)
T 1qgn_A 185 DPA-------DVGALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLN-QK- 246 (445)
T ss_dssp CSS-------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT-CC-
T ss_pred CCC-------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccccc-CC-
Confidence 753 78999999876 67 99999999999999986 66788899999999999999985321 11
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh-cccCC-CChHHHHHHHHHc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM-SSFGL-VSSQTQYLLSRML 317 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~-~~~~~-~s~~~q~~~~~~l 317 (464)
. ..+ +..++++|+||.+|..| +++||++++++ +.+.+... ..+.. .+++...++...+
T Consensus 247 ----~-~~~-------------g~Div~~S~sK~~gg~gd~~~G~l~~~~~-l~~~l~~~~~~~g~~~~~~~a~~~~~~l 307 (445)
T 1qgn_A 247 ----A-LAL-------------GADLVLHSATKFLGGHNDVLAGCISGPLK-LVSEIRNLHHILGGALNPNAAYLIIRGM 307 (445)
T ss_dssp ----T-TTT-------------TCSEEEECTTTTTTCSSSCCCEEEEECHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHG
T ss_pred ----c-ccc-------------CCEEEEECCcccccccccceEEEEEECHH-HHHHHHHHHHHhCCCCCHHHHHHHHHhH
Confidence 1 111 45578999999998554 47999999544 44444332 22332 3444444444444
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eeecC----------------CccEEEEEecCcccccCChhHHHH
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI-RCLKS----------------NAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~~~----------------~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
+. +..+.+.+.+++..+.+.|+++ ++ .+..| ..|.++++.++.. ......
T Consensus 308 ~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-----~~~~~~ 375 (445)
T 1qgn_A 308 KT-------LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-----LLTTAK 375 (445)
T ss_dssp GG-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-----HHHHHH
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-----HHHHHH
Confidence 32 2333444555677788888876 44 34322 1344778888631 011222
Q ss_pred HHHHHHHhcCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 380 LWKKIIFEVGLNISPGSSCHC---------------------NEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~---------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
++..+ +..++.++.|+.+.. ..++.+|||++ .|+++.+++.|++++++
T Consensus 376 ~l~~l-~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG---~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 376 FVDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG---VEDFDDLKADILQALDS 444 (445)
T ss_dssp HHHHC-SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 33322 223777777765421 12479999998 35799999999988864
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=215.64 Aligned_cols=281 Identities=17% Similarity=0.163 Sum_probs=194.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~v 161 (464)
..+|++.||++++ .+++++++|+++++..++.+++++||+|+++.|+|+++...+ ... |.+++.+
T Consensus 68 ~~~l~~~la~~~g----------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-g~~~~~v 136 (392)
T 3qhx_A 68 RTALEAALAAVED----------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW-NVEYTPV 136 (392)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhc-CcEEEEe
Confidence 4577778887764 236889999999999999999999999999999998766554 445 9999998
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.. +...
T Consensus 137 ~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~-~~~~-- 197 (392)
T 3qhx_A 137 ALA-------DLDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASP-ALQQ-- 197 (392)
T ss_dssp CTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCT-TTCC--
T ss_pred CCC-------CHHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccc-ccCC--
Confidence 864 78999988764 8999999999999999976 778889999999999999999853 2211
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhcc-c-CCCChHHHHHHHHHcC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSS-F-GLVSSQTQYLLSRMLS 318 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~-~-~~~s~~~q~~~~~~l~ 318 (464)
. ..+ +..+++.|+||.+|.+| +|+||++++++.+.+.+..... + ...++..+.++...++
T Consensus 198 ---~-~~~-------------~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 260 (392)
T 3qhx_A 198 ---P-LSL-------------GADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLK 260 (392)
T ss_dssp ---G-GGG-------------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred ---h-HHh-------------CCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 1 111 45588999999999777 8999999976666555544332 2 3356677777766665
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eeecCC----------------ccEEEEEecCcccccCChhHHHHH
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI-RCLKSN----------------AGLFCWVDMRHLLVSNTFEAEKEL 380 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~~~~----------------~g~f~~~~l~~~~~~~~~~~~~~l 380 (464)
. +....+...++...+.+.|+++ ++ .+..|. .|.++++.++.. ......+
T Consensus 261 ~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~ 328 (392)
T 3qhx_A 261 T-------LVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-----RTAAEQL 328 (392)
T ss_dssp T-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-----HHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-----HHHHHHH
Confidence 4 2233444555666777777765 33 222111 144788888641 1112233
Q ss_pred HHHHHHhcCeEEeCCCCCCC------------------CCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 381 WKKIIFEVGLNISPGSSCHC------------------NEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 381 ~~~ll~~~gI~v~pg~~f~~------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
...+ +..|+.+..|+.+.. ..++.+|||++. |+.+..++.|.+++
T Consensus 329 ~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~~~i~~l~~al 391 (392)
T 3qhx_A 329 CAKT-NIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI---EDVADLLDDLKQAL 391 (392)
T ss_dssp HHHC-SSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred HHhC-CCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc---CCHHHHHHHHHHHh
Confidence 3333 445777777765331 135689999985 34455555555543
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=214.40 Aligned_cols=301 Identities=12% Similarity=0.101 Sum_probs=203.1
Q ss_pred CCCCCC--cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCc
Q 037587 80 FQDYHG--FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGV 156 (464)
Q Consensus 80 Y~~~~g--~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~ 156 (464)
|.+..| ..++|+++|++++ . ++|++|+|+++++..++.++ +++||.|+++.|+|+.+...+... |+
T Consensus 26 ~~~~~g~~~~~l~~~la~~~~--------~--~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 94 (394)
T 1o69_A 26 YIAPLGEFVNRFEQSVKDYSK--------S--ENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL-KA 94 (394)
T ss_dssp TTSCTTHHHHHHHHHHHHHHC--------C--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT-TC
T ss_pred CccCCChHHHHHHHHHHHHhC--------C--CcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-CC
Confidence 555557 7899999999985 2 68999999999999999999 899999999999999998888876 99
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc-ccc
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS-GTV 235 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~-~~~ 235 (464)
+++.++++ .+|.+|++.+++.+++. ..++++|++++ |||.. .++++|.++|+++|+++|+||+|+ +..
T Consensus 95 ~~~~v~~~--~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~---~~l~~i~~l~~~~~~~li~Dea~~~g~~ 163 (394)
T 1o69_A 95 KPVFIDCD--ETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNA---AKMDEIVEICKENDIVLIEDAAEALGSF 163 (394)
T ss_dssp EEEEECBC--TTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCC---CCHHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred EEEEEEeC--CCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCCh---hhHHHHHHHHHHcCCEEEEECcCcccce
Confidence 99999987 46789999999988641 11578888884 89976 467788889999999999999998 443
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCC-----------
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL----------- 304 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~----------- 304 (464)
+.+. ....+ .+ +.+.||||..+++|.|+||++++++.+.+.+.....++.
T Consensus 164 ~~~~-----~~~~~------------~~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 224 (394)
T 1o69_A 164 YKNK-----ALGTF------------GE--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDY 224 (394)
T ss_dssp ETTE-----ETTSS------------SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSC
T ss_pred eCCc-----ccccc------------cC--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCcccccccc
Confidence 3322 11011 12 345566433344677999999965666665554433221
Q ss_pred -----CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ccE-EEEEecCccc-----
Q 037587 305 -----VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN----AGL-FCWVDMRHLL----- 369 (464)
Q Consensus 305 -----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~-f~~~~l~~~~----- 369 (464)
++.+...++...+ ++ +++..+.+++.++++.+.|.+. +++.++. +++ ++++.++...
T Consensus 225 g~~~~~~~~~aa~~l~~l---~~----l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 296 (394)
T 1o69_A 225 GYNYRLSNVLGAIGVAQM---EV----LEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNA 296 (394)
T ss_dssp CCBCBCCHHHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCC
T ss_pred CcccCcCHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccc
Confidence 1222222222222 22 4445667778888889999887 6665542 343 3667765310
Q ss_pred ---------ccC-ChhHHHHHHHHHHHhcCeEEeCCCCCC---C--CCC-------------CeEEEEeec-CCHHHHHH
Q 037587 370 ---------VSN-TFEAEKELWKKIIFEVGLNISPGSSCH---C--NEP-------------GWFRICFAN-ITEETLQV 420 (464)
Q Consensus 370 ---------~~~-~~~~~~~l~~~ll~~~gI~v~pg~~f~---~--~~~-------------~~~Ris~~~-~~~e~l~~ 420 (464)
... ......++...| .++||.+++|..+. + ..- ..+|+.... .++++++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~ 375 (394)
T 1o69_A 297 CQKDINISQKNITLHPKISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYE 375 (394)
T ss_dssp CCEEEECCCCCCCCCHHHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHH
T ss_pred ccccccccccccccccCHHHHHHHH-HHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHH
Confidence 000 001233566665 56899999985321 0 000 234444443 78999999
Q ss_pred HHHHHHHHHH
Q 037587 421 ALQRIKVFAQ 430 (464)
Q Consensus 421 ~l~~l~~~l~ 430 (464)
++++|+++++
T Consensus 376 ~~~~l~~~~~ 385 (394)
T 1o69_A 376 ISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-24 Score=213.74 Aligned_cols=285 Identities=17% Similarity=0.165 Sum_probs=191.9
Q ss_pred ccCCCC--CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cc
Q 037587 78 ALFQDY--HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LK 151 (464)
Q Consensus 78 ~~Y~~~--~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~ 151 (464)
..|... ....++++.++++++ .+++++++|+++++..++.+++++||.|+++.|+|...... +.
T Consensus 48 ~~y~~~~~~~~~~l~~~la~~~g----------~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~ 117 (412)
T 2cb1_A 48 YVYARQKDPTAKALEERLKALEG----------ALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLS 117 (412)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTT
T ss_pred cCcCCCCChHHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHH
Confidence 356543 235778888888875 23799999999999999999999999999999999865543 34
Q ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 152 WRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 152 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
.. |++++.++. |++++++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|
T Consensus 118 ~~-g~~~~~~~~--------~~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~ 179 (412)
T 2cb1_A 118 LM-GVTVRYVDP--------EPEAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTF 179 (412)
T ss_dssp TT-TCEEEEECS--------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGG
T ss_pred Hc-CCEEEEECC--------CHHHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCC
Confidence 44 999988874 37888887754 7899999999999999986 788889999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecC-H--------------------
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNN-E-------------------- 290 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~-~-------------------- 290 (464)
....+... .. .. +.++++.|+||.++.+|.|+|++++.+ .
T Consensus 180 ~~~~~~~~-----~~-~~-------------~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 240 (412)
T 2cb1_A 180 GAAGALCR-----PL-AW-------------GAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW 240 (412)
T ss_dssp GTTTTSCC-----GG-GG-------------TCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------H
T ss_pred ccccccCC-----cc-cc-------------CCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchh
Confidence 86422111 11 11 467889999999988999999988644 2
Q ss_pred ------HHHHHHHHhc--ccC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--cC---
Q 037587 291 ------RVVSAATKMS--SFG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL--KS--- 355 (464)
Q Consensus 291 ------~~~~~~~~~~--~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~--~~--- 355 (464)
.+.+.++... .+. ..++....++...++. +....+...+..+++.+.|.+. ++.+. +.
T Consensus 241 ~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~ 313 (412)
T 2cb1_A 241 EALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLPE 313 (412)
T ss_dssp HHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTT
T ss_pred hccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCC
Confidence 2222232221 121 2233333333333321 2233334456667788888876 66633 21
Q ss_pred ------------CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC---------CCCC--------------
Q 037587 356 ------------NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS---------SCHC-------------- 400 (464)
Q Consensus 356 ------------~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~---------~f~~-------------- 400 (464)
..+.++.+.+ . .. +.+..++++.||.+ .++ .+..
T Consensus 314 ~p~~~~~~~~~~~~~~iv~~~~-~--~~-------~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~ 382 (412)
T 2cb1_A 314 DPAHRNARKYLASGGPILTLDL-G--DL-------ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQA 382 (412)
T ss_dssp CTTHHHHHHHCSSSCSEEEEEC-S--SH-------HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHT
T ss_pred CccHHHHHHhCCCCceEEEEEe-C--CH-------HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhc
Confidence 1233666776 2 11 23455667789998 664 1210
Q ss_pred -CCCCeEEEEeec-CCHHHHHHHHHHHHH
Q 037587 401 -NEPGWFRICFAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 401 -~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 427 (464)
..++.+|+|++. .++++++.++++|++
T Consensus 383 g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 383 GVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 015789999987 456777777777653
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=225.33 Aligned_cols=316 Identities=12% Similarity=0.026 Sum_probs=215.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc-----EEEeCChHHHHHHHHHHhcC--------CC-----CeEEEcC
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK-----LVLTAGSTAANETLMFCLAD--------PG-----DAFLLPT 140 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~-----i~it~G~~~al~~~~~~l~~--------~g-----d~Vlv~~ 140 (464)
.|....+..++++++.+++.+.+| ++.++ +++|+|+++++..++.++.. +| +.|++++
T Consensus 72 ~~~~~~~~~~l~~~~~~~la~l~g----~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~ 147 (452)
T 2dgk_A 72 DKEEYPQSAAIDLRCVNMVADLWH----APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP 147 (452)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT----CCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS
T ss_pred ChhhChhHHHHHHHHHHHHHHHhC----CCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC
Confidence 344445667888888888888776 45554 99999999999999988754 45 5899999
Q ss_pred CCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh
Q 037587 141 PYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS 220 (464)
Q Consensus 141 p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~ 220 (464)
+|..+...+... |++++.+++++ ++|.+|+++|++++.+ ++++|++++|+||||.+.+ +++|.++|++
T Consensus 148 -~h~~~~~~~~~~-G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~ 215 (452)
T 2dgk_A 148 -VQICWHKFARYW-DVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEF---PQPLHDALDK 215 (452)
T ss_dssp -CCHHHHHHHHHT-TCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCC---HHHHHHHHHH
T ss_pred -CcHHHHHHHHHc-CceEEEEecCC-CCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHH
Confidence 998888888777 99999999874 4688999999998864 7899999999999999965 6667778878
Q ss_pred C------CeEEEEecccccccc--CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH
Q 037587 221 K------RIHIVSDEIYSGTVF--DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV 292 (464)
Q Consensus 221 ~------~~~lI~Deay~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~ 292 (464)
+ ++++++|++|+.+.. ... ..... + . ..+...+..|++| ++++|+++||++++++.+
T Consensus 216 ~~~~~~~~~~l~vD~a~~~~~~~~~~~--~~~~~--~-~---------~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~ 280 (452)
T 2dgk_A 216 FQADTGIDIDMHIDAASGGFLAPFVAP--DIVWD--F-R---------LPRVKSISASGHK-FGLAPLGCGWVIWRDEEA 280 (452)
T ss_dssp HHHHHCCCCCEEEECTTGGGTHHHHCT--TCCCS--T-T---------STTEEEEEEETTT-TTCCCSSCEEEEESSGGG
T ss_pred HhhccCCCCcEEEEcccHHHHHHhhCc--cchhh--c-C---------CCCCcEEEECccc-ccCCCCCeEEEEEcCHHH
Confidence 4 999999999987532 111 11000 1 0 1134556789999 556899999999965432
Q ss_pred -HHHHHHhcccC-----------CC---ChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec--
Q 037587 293 -VSAATKMSSFG-----------LV---SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK-- 354 (464)
Q Consensus 293 -~~~~~~~~~~~-----------~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-- 354 (464)
.+.+.....+. +. ..+.+.++...+. .+.+++..+.+.++++++.+.|++. ++++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 355 (452)
T 2dgk_A 281 LPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQNASYQVAAYLADEIAKLGPYEFICTG 355 (452)
T ss_dssp SCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred HHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCC
Confidence 12221111111 11 2234444444442 2345667777888889999999988 587764
Q ss_pred ---CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 355 ---SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-CNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 355 ---~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
+..+ ++.+.++.... ... ...++...|. ++||.++.+.... ..+.+++||+++. .++++++.+++.|++++
T Consensus 356 ~~~~~~~-~v~f~~~~~~~-~~~-~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~ 431 (452)
T 2dgk_A 356 RPDEGIP-AVCFKLKDGED-PGY-TLYDLSERLR-LRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASL 431 (452)
T ss_dssp CTTTBSS-EEEEEECTTCC-CSC-CHHHHHHHHH-HTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCeE-EEEEEecCccc-ccC-CHHHHHHHHH-hcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3445 56666653210 000 1124666664 6799765322111 1134589999987 67899999999999998
Q ss_pred HhhCc
Q 037587 430 QSCNP 434 (464)
Q Consensus 430 ~~~~~ 434 (464)
+..+.
T Consensus 432 ~~~~~ 436 (452)
T 2dgk_A 432 KYLSD 436 (452)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76653
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-25 Score=218.61 Aligned_cols=282 Identities=16% Similarity=0.129 Sum_probs=186.1
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~~g~~~~~ 160 (464)
+..++|++||++++ .+ +.++++++++++..++. ++++||.|+++.|+|++... .++.. |++++.
T Consensus 56 ~~~~lr~~la~~~g--------~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~v~~ 123 (393)
T 1n8p_A 56 NRENLERAVAALEN--------AQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAH-GVETSF 123 (393)
T ss_dssp HHHHHHHHHHHHTT--------CS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTT-CSCCEE
T ss_pred hHHHHHHHHHHHhC--------CC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHc-CcEEEE
Confidence 35789999999875 23 45555556999999999 99999999999999985443 34545 999988
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC----CeEEEEecccccccc
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK----RIHIVSDEIYSGTVF 236 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~----~~~lI~Deay~~~~~ 236 (464)
++.+ | +++++++++ ++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|..+.+
T Consensus 124 v~~~-------d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 124 TNDL-------L-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp ESSH-------H-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred eCCC-------h-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 8753 5 677776643 7899999999999999986 77788888899 999999999987544
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHHHHHHHHhcc-cC-CCChHHHHHH
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERVVSAATKMSS-FG-LVSSQTQYLL 313 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~~~~~~~~~~-~~-~~s~~~q~~~ 313 (464)
. . ...+ +.++++.|+||.+|.+|+|+ ||++++++.+.+.+..... +. ..++..+.++
T Consensus 187 ~-~------~~~~-------------~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 246 (393)
T 1n8p_A 187 S-N------PLNF-------------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLT 246 (393)
T ss_dssp C-C------GGGG-------------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred C-C------HHHc-------------CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 2 2 1112 45688999999999899999 9999855555554443322 22 3455555555
Q ss_pred HHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC--Ce-e-ecC--------------C--c-cEEEEEecCcccccC
Q 037587 314 SRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG--IR-C-LKS--------------N--A-GLFCWVDMRHLLVSN 372 (464)
Q Consensus 314 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~~-~-~~~--------------~--~-g~f~~~~l~~~~~~~ 372 (464)
...++. +....+...++...+.+.|.+.. +. + .+. . . |.++++.++..
T Consensus 247 ~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~---- 315 (393)
T 1n8p_A 247 HRGLKT-------LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG---- 315 (393)
T ss_dssp HHHHTT-------HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC----
T ss_pred Hhccch-------HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc----
Confidence 555543 22333444555666777776652 22 2 110 1 1 44788888631
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCC----------CCCC-----------CCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGS----------SCHC-----------NEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~----------~f~~-----------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
......++..+ +..++.+..|+ .++. ..++.+|+|++. .++++++.+.++|+++
T Consensus 316 -~~~~~~~l~~l-~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 316 -AEAASKFASST-RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp -HHHHHHHHHHC-SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhhC-CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 01122233322 23344544442 2210 114789999998 4567777777777654
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=219.58 Aligned_cols=340 Identities=11% Similarity=0.070 Sum_probs=209.7
Q ss_pred CCCCceEEeeccc--ccc--cHHHHH-H-HHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCC
Q 037587 33 HNPSGIIQMGLAE--NQL--SFDLLE-S-WLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVK 106 (464)
Q Consensus 33 ~~~~~~i~l~~~~--n~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~ 106 (464)
.+...++|++.+. +++ .+|.+. + ++.+.... ......|.. .+..+.+..+++.+.+..+ .
T Consensus 51 ~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~----------~~~~~~~~~-~~~~~~~~~la~~la~~~~---~ 116 (449)
T 2cjg_A 51 ITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQ----------AALNKPSNS-DVYSVAMARFVETFARVLG---D 116 (449)
T ss_dssp TTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHH----------HHTCCCCTT-TCCCHHHHHHHHHHHHHHC---C
T ss_pred CCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHH----------HHhcCCCCc-ccCCHHHHHHHHHHHHhcC---C
Confidence 3445688986553 444 346666 5 65551100 111112221 1233444555555544433 1
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhc---C----------C-CCeEEEcCCCCCChhhhcccCCCc-------------EEE
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLA---D----------P-GDAFLLPTPYYPGFDRDLKWRPGV-------------EIV 159 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~---~----------~-gd~Vlv~~p~y~~~~~~~~~~~g~-------------~~~ 159 (464)
..+++|++|+|+++++..+++++. . + ||.|++.+|+|+++...+....|. .++
T Consensus 117 ~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (449)
T 2cjg_A 117 PALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRI 196 (449)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEE
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcE
Confidence 357899999999999999987542 2 2 899999999998765543222121 455
Q ss_pred EEecCCCCCc--------ccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCC-CCCCHHHHHHHHHHHhhCCeEEEEec
Q 037587 160 PIHCSSSNGF--------RITISALENAYQQAQTLNLKVKGVLITNP-SNPLG-TAMTHQELNHLINFSKSKRIHIVSDE 229 (464)
Q Consensus 160 ~v~~~~~~~~--------~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG-~~~s~~~l~~i~~~~~~~~~~lI~De 229 (464)
.+|.+..+.. ..+++.|++.+++ .++++++|+ ++| +|||| ..++.+++++|.++|+++|+++|+||
T Consensus 197 ~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~---~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DE 272 (449)
T 2cjg_A 197 DAPYMRPGLDEPAMAALEAEALRQARAAFET---RPHDIACFV-AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDE 272 (449)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH---STTTEEEEE-ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEcCCCchhhccccchhhHHHHHHHHHHHHh---cCCceEEEE-EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEec
Confidence 5554320011 2355667777753 123676655 556 68999 58899999999999999999999999
Q ss_pred cccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHH-----HHH--hccc
Q 037587 230 IYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA-----ATK--MSSF 302 (464)
Q Consensus 230 ay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~-----~~~--~~~~ 302 (464)
+|.++.+.+. . ... .... ....+ .||||.+ |+||+++++ .+.+. ... ....
T Consensus 273 v~~g~g~~g~--~-~~~-~~~~---------~~~di---~t~sK~l-----~iG~~~~~~-~~~~~l~~~~~~~~~~~~t 330 (449)
T 2cjg_A 273 VQTGCGLTGT--A-WAY-QQLD---------VAPDI---VAFGKKT-----QVCGVMAGR-RVDEVADNVFAVPSRLNST 330 (449)
T ss_dssp TTTTTTTTSS--S-STH-HHHT---------CCCSE---EEECGGG-----SSEEEEECG-GGGGSTTCTTTSTTSSCCS
T ss_pred cccCCCccCc--c-eee-cccC---------CCceE---EEecCcc-----cEEEEEECH-HHhhhhhhcccCCcccccC
Confidence 9997544332 1 121 1111 11233 3899987 789999965 44332 111 1122
Q ss_pred CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-----C-CeeecCCccEEEEEecCcccccCChhH
Q 037587 303 GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-----G-IRCLKSNAGLFCWVDMRHLLVSNTFEA 376 (464)
Q Consensus 303 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----g-~~~~~~~~g~f~~~~l~~~~~~~~~~~ 376 (464)
+..+++++.++.++++... + +...+.++++++++.+.|+++ + +...++.++ |++++++.. ..
T Consensus 331 ~~~n~~~~~aa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~-~~~~~~~~~------~~ 398 (449)
T 2cjg_A 331 WGGNLTDMVRARRILEVIE---A--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGL-MCAFSLPTT------AD 398 (449)
T ss_dssp SSSCHHHHHHHHHHHHHHH---H--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETT-EEEEECSSH------HH
T ss_pred CCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccE-EEEEEECCh------HH
Confidence 3467888888888775321 1 123344455556666666543 2 444555655 677888642 12
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 377 EKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 377 ~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
..+++..|+ ++||.+.|+. .+++||+++. .+++++++++++|++++++
T Consensus 399 ~~~~~~~l~-~~Gv~v~~~g------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 399 RDELIRQLW-QRAVIVLPAG------ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp HHHHHHHHH-HTTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 335777776 5799999863 4789998765 6899999999999999875
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=215.15 Aligned_cols=289 Identities=14% Similarity=0.161 Sum_probs=200.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcE
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVE 157 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~ 157 (464)
.|.+..+..++++++|++++ . +++++++|+++++..++.++ +++||.|+++.|+|..+...+... |++
T Consensus 30 ~~~~~~~~~~l~~~la~~~~--------~--~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~-G~~ 98 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFVG--------A--KYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALL-GAK 98 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred CccCChHHHHHHHHHHHHhC--------C--CcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 45555567899999999985 2 37999999999999999999 899999999999999998888877 999
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc-cc
Q 037587 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT-VF 236 (464)
Q Consensus 158 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~-~~ 236 (464)
++.++++++ .+.+|++.+++.+++ ++++|+ |+||||...+ +++|.++|+++|+++|+|++|+.. .+
T Consensus 99 ~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~ 165 (367)
T 3nyt_A 99 PVYVDIDPR-TYNLDPQLLEAAITP------RTKAII---PVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASY 165 (367)
T ss_dssp EEEECBCTT-TCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEE
T ss_pred EEEEecCCc-cCCcCHHHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeE
Confidence 999998753 478999999988753 787766 7889997754 777888899999999999999742 12
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC--CcCCCCCccEEEEEEecCHHHHHHHHHhccc------------
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL--SKDFSMPGFRVGMIYSNNERVVSAATKMSSF------------ 302 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~--SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~------------ 302 (464)
.+. ....+ + .+++.|| +|.+|.+|. .|+++++++.+.+.++.....
T Consensus 166 ~~~-----~~~~~-------------~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g 225 (367)
T 3nyt_A 166 KGK-----RSCNL-------------S-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVG 225 (367)
T ss_dssp TTE-----ETTSS-------------S-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCC
T ss_pred CCe-----eccCC-------------C-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccC
Confidence 221 11001 2 4677887 899985586 899999777777666554332
Q ss_pred --CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC-Cc---cE-EEEEecCcccccCChh
Q 037587 303 --GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS-NA---GL-FCWVDMRHLLVSNTFE 375 (464)
Q Consensus 303 --~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~---g~-f~~~~l~~~~~~~~~~ 375 (464)
+..+.+.++++...++. +++..++.++..+++.+.|.+.++.+... .+ ++ ++++.++.
T Consensus 226 ~~~~~~~~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 290 (367)
T 3nyt_A 226 VNSRLDTLQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMDN-------- 290 (367)
T ss_dssp CBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECSS--------
T ss_pred cCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeCC--------
Confidence 22455555555444432 22333444555667777888776544322 11 11 23334331
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCC--------CC----------CCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 376 AEKELWKKIIFEVGLNISPGSSCHC--------NE----------PGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~pg~~f~~--------~~----------~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
..++...| +++||.++++..... .. ...+|+++.. +++++++.+++.|++.
T Consensus 291 -~~~l~~~L-~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 291 -RESVQASL-KAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp -HHHHHHHH-HHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred -HHHHHHHH-HHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 12355555 567999987643110 00 2368999877 7999999999998764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-25 Score=216.11 Aligned_cols=298 Identities=12% Similarity=0.169 Sum_probs=197.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcE
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVE 157 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~ 157 (464)
.|.+..+..++|+++|++++ . +++++++|+++++..++.++ +++||+|+++.|+|..+...+... |++
T Consensus 31 ~~~~~~~~~~l~~~la~~~~--------~--~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~ 99 (373)
T 3frk_A 31 WFILGDEDKKFEQEFADYCN--------V--NYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYT-GAK 99 (373)
T ss_dssp CCSSSHHHHHHHHHHHHHHT--------S--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHH-SCE
T ss_pred CccCCchHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCE
Confidence 35555677999999999986 2 37899999999999999999 899999999999999998888777 999
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-c
Q 037587 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-F 236 (464)
Q Consensus 158 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~ 236 (464)
++.++.++ +++.+|++++++.+++ ++++|+ |+||||...+ +++|.++|+++|+++|+|++|+... +
T Consensus 100 ~~~~~~~~-~~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~ 166 (373)
T 3frk_A 100 PIFVEPDI-RTYNIDPSLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLY 166 (373)
T ss_dssp EEEECEET-TTTEECGGGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEE
T ss_pred EEEEeccc-cccCcCHHHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEE
Confidence 99999874 3578899999988754 788777 6789999865 6678888889999999999998432 2
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC--cCCCCCccEEEEEEecCHHHHHHHHHhcccC-----------
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS--KDFSMPGFRVGMIYSNNERVVSAATKMSSFG----------- 303 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S--K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~----------- 303 (464)
... .... -..+++.||| |.+|..| +.|+++++++.+.+.++.....+
T Consensus 167 ~~~-----~~~~--------------~~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g 226 (373)
T 3frk_A 167 KGM-----KVGS--------------LGDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKG 226 (373)
T ss_dssp TTE-----ETTS--------------SSSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCC
T ss_pred CCE-----eccc--------------cccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCcccccc
Confidence 211 1100 1236678877 9887325 48999987776666555443321
Q ss_pred ---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCccEEEEEecCcccccCChhHHHH
Q 037587 304 ---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-SNAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 304 ---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
..+.+..++....+.. +++..+..++..+++.+.|.+.++.+.. +.++...|..++-... +..+
T Consensus 227 ~~~~~~~~~aa~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 294 (373)
T 3frk_A 227 FNSRLDELQAGFLRVKLKY-------LDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE-----KRDE 294 (373)
T ss_dssp CBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES-----SHHH
T ss_pred ccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC-----CHHH
Confidence 1233333333222221 3334444555666777777766643321 1111111111110000 1224
Q ss_pred HHHHHHHhcCeEEeCCCCCCCC--------------C-------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 380 LWKKIIFEVGLNISPGSSCHCN--------------E-------PGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~--------------~-------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+...| .++||.++++...... . .+.+|++++. .++++++.+++.|+++..+++
T Consensus 295 l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~~ 369 (373)
T 3frk_A 295 LQKYL-NNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEHH 369 (373)
T ss_dssp HHHHH-HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC----
T ss_pred HHHHH-HHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 55555 5679999876521100 0 1579999987 899999999999998766554
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=214.64 Aligned_cols=323 Identities=11% Similarity=0.152 Sum_probs=218.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC--------CC-----C-eEEEcCCCCCC
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD--------PG-----D-AFLLPTPYYPG 145 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~--------~g-----d-~Vlv~~p~y~~ 145 (464)
|....+..++.+.+.+++.+.+|. +.+++++++|+|+++++..++.++.. +| + .|+++.++|+.
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s 201 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS 201 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhhChHHHHHHHHHHHHHHHHhCC--CCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH
Confidence 443334456777777777777661 12267999999999999999988753 56 6 79999999998
Q ss_pred hhhhcccCCCc---EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC
Q 037587 146 FDRDLKWRPGV---EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR 222 (464)
Q Consensus 146 ~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~ 222 (464)
+...+... |. +++.+|++ .++.+|+++|++++++....+.++++|++++|+||||.+.+ +++|.++|+++|
T Consensus 202 ~~~~~~~~-g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g 275 (504)
T 2okj_A 202 IKKAGAAL-GFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYN 275 (504)
T ss_dssp HHHHHHHT-TSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Confidence 88877765 65 89999986 36789999999999865444556899999999999999854 778889999999
Q ss_pred eEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHH-HHHHhcc
Q 037587 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVS-AATKMSS 301 (464)
Q Consensus 223 ~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~-~~~~~~~ 301 (464)
+++++|++|+...+..+ .+.....-+. ...+++.|++|.++.| .++|+++++++.+.. .+.....
T Consensus 276 ~~lhvD~a~~~~~~~~~--~~~~~~~g~~-----------~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~ 341 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSR--KHRHKLNGIE-----------RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAG 341 (504)
T ss_dssp CEEEEEETTGGGGGGCT--TTGGGGTTGG-----------GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCS
T ss_pred CEEEEehhhhhHHHhCH--hhHhhcCCcc-----------cCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCc
Confidence 99999999997655433 2212111111 2235678999999844 689999997653333 2222211
Q ss_pred cCC----------------------CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec---C
Q 037587 302 FGL----------------------VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK---S 355 (464)
Q Consensus 302 ~~~----------------------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~ 355 (464)
+.. ..++.+.++..++. .+.+++..+...+.++++.+.|++. |+++.. +
T Consensus 342 ~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p 416 (504)
T 2okj_A 342 YLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP 416 (504)
T ss_dssp SSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCC
T ss_pred cccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 110 12455555555553 2335666677778889999999886 888764 6
Q ss_pred CccEEEEEecCccccc--CC--h-----hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEee-c-CCHHHHHHHHHH
Q 037587 356 NAGLFCWVDMRHLLVS--NT--F-----EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFA-N-ITEETLQVALQR 424 (464)
Q Consensus 356 ~~g~f~~~~l~~~~~~--~~--~-----~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~-~-~~~e~l~~~l~~ 424 (464)
..+++++...+..... .. + ....++...|+ +.|+.+..+..+. ...+++|++++ . .++++++.++++
T Consensus 417 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~G~~~~~~~~~~-~~~~~lRis~~~~~~t~edi~~~~~~ 494 (504)
T 2okj_A 417 EHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM-ESGTTMVGYQPQG-DKANFFRMVISNPAATQSDIDFLIEE 494 (504)
T ss_dssp SSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHH-HHTSCEEEEEEET-TEEEEEEECCCCTTCCHHHHHHHHHH
T ss_pred CeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHH-hCCcEEEEeeEEC-CceEEEEEEeCCCCCCHHHHHHHHHH
Confidence 7776766555532110 00 0 01224666665 4575443322222 12368999997 3 689999999999
Q ss_pred HHHHHHh
Q 037587 425 IKVFAQS 431 (464)
Q Consensus 425 l~~~l~~ 431 (464)
|++++++
T Consensus 495 l~~~~~~ 501 (504)
T 2okj_A 495 IERLGQD 501 (504)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 9988764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=214.18 Aligned_cols=322 Identities=12% Similarity=0.122 Sum_probs=217.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCC-----CCCcEEEeCChHHHHHHHHHHhcCC---------CC--------e-
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKF-----DPNKLVLTAGSTAANETLMFCLADP---------GD--------A- 135 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-----~~~~i~it~G~~~al~~~~~~l~~~---------gd--------~- 135 (464)
.|....+..++++.+++++.+.+|.+... ....+++|+|+|+++..++.++..+ || .
T Consensus 104 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~ 183 (486)
T 1js3_A 104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183 (486)
T ss_dssp SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred ccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCE
Confidence 34444456789999999998887732100 1246899999999999988775321 42 3
Q ss_pred -EEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHH
Q 037587 136 -FLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHL 214 (464)
Q Consensus 136 -Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i 214 (464)
|+++.++|..+...+... |++++.+|++ .++.+|+++|++++++..+.+..+.+|++++|+||||.+ +++++|
T Consensus 184 ~v~~s~~~h~s~~~~~~~~-G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~---~~l~~I 257 (486)
T 1js3_A 184 VAYASDQAHSSVERAGLIG-GVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF---DNLLEV 257 (486)
T ss_dssp EEEEETTCCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CCHHHH
T ss_pred EEEECCCCcHHHHHHHHhC-CCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCC---CCHHHH
Confidence 788999999988888877 9999999986 478899999999998743334445688999999999987 568889
Q ss_pred HHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH-H
Q 037587 215 INFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV-V 293 (464)
Q Consensus 215 ~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~-~ 293 (464)
+++|+++|+++++|++|+...+..+ .+.....-+. ....+..+++|.++.| +++|+++++++.. .
T Consensus 258 ~~la~~~~~~lhvD~a~g~~~~~~~--~~~~~~~g~~-----------~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~ 323 (486)
T 1js3_A 258 GPICHEEDIWLHVDAAYAGSAFICP--EFRHLLNGVE-----------FADSFNFNPHKWLLVN-FDCSAMWVKRRTDLT 323 (486)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGST--TTGGGGTTGG-----------GCSEEEECHHHHSSCC-SSCEEEEESCHHHHH
T ss_pred HHHHHHcCCEEEEehhhHHHHHHCH--HHHHHhcCcc-----------ccCeeEEchhhhcCCC-cceEEEEEeCHHHHH
Confidence 9999999999999999987544322 1222111111 1224457899999855 8999999977653 2
Q ss_pred HHHHHhccc--------------------C--CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 037587 294 SAATKMSSF--------------------G--LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI 350 (464)
Q Consensus 294 ~~~~~~~~~--------------------~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 350 (464)
+.+.....+ . ....+.+.++...+. .+.+++..+.+.++++++.+.|.+. |+
T Consensus 324 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 398 (486)
T 1js3_A 324 GAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAFVLQDPRF 398 (486)
T ss_dssp GGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred HHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 222100000 0 012344554444442 2346666777778888999999887 88
Q ss_pred eee-cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHH
Q 037587 351 RCL-KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKV 427 (464)
Q Consensus 351 ~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~ 427 (464)
++. ++..+++. +.++.. .....++...|.+ .|+.+.++..+. +.+++|++++. .++++++.++++|++
T Consensus 399 ~~~~~~~~~~v~-f~~~~~-----~~~~~~l~~~L~~-~g~~~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~ 469 (486)
T 1js3_A 399 EVCAEVTLGLVC-FRLKGS-----DGLNEALLERINS-ARKIHLVPCRLR--GQFVLRFAICSRKVESGHVRLAWEHIRG 469 (486)
T ss_dssp EECSCCCSSEEE-EEESSC-----HHHHHHHHHHHHH-HTSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEeCCCceeEEE-EEecCh-----HHHHHHHHHHHHh-cCCEEEEEEEEC--CEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 876 36666544 455421 0112356677654 476543333332 35689999854 478999999999999
Q ss_pred HHHhhCc
Q 037587 428 FAQSCNP 434 (464)
Q Consensus 428 ~l~~~~~ 434 (464)
++++...
T Consensus 470 ~~~~~~~ 476 (486)
T 1js3_A 470 LAAELLA 476 (486)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9876653
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=219.51 Aligned_cols=312 Identities=12% Similarity=0.045 Sum_probs=212.0
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCcEE---EeCChHHHHHHHHHHhcCC--------CC-----eEEEcCCCCCChh
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLV---LTAGSTAANETLMFCLADP--------GD-----AFLLPTPYYPGFD 147 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~---it~G~~~al~~~~~~l~~~--------gd-----~Vlv~~p~y~~~~ 147 (464)
.+..++.+.+.+++.+.+| .+.+++++. +|+|+++++.+++.++..+ |+ .|+++.++|..+.
T Consensus 91 p~~~~le~~~~~~la~l~g--~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~ 168 (502)
T 3hbx_A 91 PVTTELQNRCVNMIAHLFN--APLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE 168 (502)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhC--CCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH
Confidence 3456777788888877766 222255544 4899999999998887655 76 8999999999888
Q ss_pred hhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC------
Q 037587 148 RDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK------ 221 (464)
Q Consensus 148 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~------ 221 (464)
..+... |++++.+++++ +++.+|++++++++.+ ++++|++++|+||||.+.+ +++|.++|+++
T Consensus 169 ~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~ 237 (502)
T 3hbx_A 169 KFARYF-EVELKEVKLSE-GYYVMDPQQAVDMVDE------NTICVAAILGSTLNGEFED---VKLLNDLLVEKNKETGW 237 (502)
T ss_dssp HHHHHT-TCEEEEECCBT-TBCSCCHHHHHHHCCT------TEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHHHHHCC
T ss_pred HHHHHc-CceeEEEecCC-CcCcCCHHHHHHHHhh------CCEEEEEecCCCCCCcccC---HHHHHHHHHHhhhccCC
Confidence 888877 99999999874 4588999999998865 7889999999999999965 56677777787
Q ss_pred CeEEEEecccccccc--CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHH-HHHHH
Q 037587 222 RIHIVSDEIYSGTVF--DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVV-SAATK 298 (464)
Q Consensus 222 ~~~lI~Deay~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~-~~~~~ 298 (464)
|+++++|++|+++.. ... ....... ......+..|.+|.++ ++.++||++..++... ..+..
T Consensus 238 ~~~l~VD~A~~~~~~p~~~~--~~~~~~~------------~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~ 302 (502)
T 3hbx_A 238 DTPIHVDAASGGFIAPFLYP--ELEWDFR------------LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIF 302 (502)
T ss_dssp CCCEEEECTTGGGTHHHHCT--TCCCSTT------------STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCE
T ss_pred CCeEEEECCccchhhhhhCc--ccccccC------------CCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhcc
Confidence 999999999986431 111 1111000 1144566789999874 7778999887654332 21111
Q ss_pred hccc-----------CCC---ChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeecC--CccEEE
Q 037587 299 MSSF-----------GLV---SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG-IRCLKS--NAGLFC 361 (464)
Q Consensus 299 ~~~~-----------~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~--~~g~f~ 361 (464)
...+ ++. ....+.++...+.. +.+.+..+...+..+++.+.|++++ +++..+ ..+ ++
T Consensus 303 ~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~-~v 376 (502)
T 3hbx_A 303 HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH-----EGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVP-LV 376 (502)
T ss_dssp EECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSS-EE
T ss_pred CcccccCCCCCccccCCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCce-EE
Confidence 1111 111 12334343333332 2345566666777789999999985 888765 454 77
Q ss_pred EEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 362 WVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-CNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.++++.... . ...++...| .++||.|....... ..+..++||+++. .++++++.+++.|++++++.+.
T Consensus 377 ~f~~~~~~~---~-~~~~l~~~L-~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 377 AFSLKDSSC---H-TEFEISDML-RRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp EEEESSCSS---C-CHHHHHHHH-HTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCc---C-CHHHHHHHH-HhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 777764211 1 112455665 57799975433221 1234689999986 7899999999999999887664
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-23 Score=210.82 Aligned_cols=327 Identities=11% Similarity=0.131 Sum_probs=221.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcC--------------CCCeEEEcCCCC
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD--------------PGDAFLLPTPYY 143 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~--------------~gd~Vlv~~p~y 143 (464)
..|....+..++++.+++++.+.+|. +.+++.+++|+|+++++..++.++.. +++.|+++.++|
T Consensus 125 ~~~~~~p~~~~le~~~~~~l~~~~g~--~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H 202 (511)
T 3vp6_A 125 FTYEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 202 (511)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred CCcccCchHHHHHHHHHHHHHHHhCC--CCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence 35665566788999999999988872 23357899999999999988887654 567899999999
Q ss_pred CChhhhcccCCCc---EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh
Q 037587 144 PGFDRDLKWRPGV---EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS 220 (464)
Q Consensus 144 ~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~ 220 (464)
..+...+... |+ +++.++.+. ++.+|+++|++++++....+..+++|++++|+||||.+ +++++|+++|++
T Consensus 203 ~s~~~~~~~~-g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v---d~l~~I~~ia~~ 276 (511)
T 3vp6_A 203 YSIKKAGAAL-GFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF---DPIQEIADICEK 276 (511)
T ss_dssp THHHHHHHHT-TSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB---CCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc---ccHHHHHHHHHH
Confidence 9998888876 87 899999863 57899999999998755555558999999999999998 568889999999
Q ss_pred CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHH-HHh
Q 037587 221 KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA-TKM 299 (464)
Q Consensus 221 ~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~-~~~ 299 (464)
+|+++++|++|+...+..+ .+.. .... ......++.+++|+++.| ..+|+++.+++.+.... ...
T Consensus 277 ~~~~lhvD~a~~~~~~~~~--~~~~---~~~g--------~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~ 342 (511)
T 3vp6_A 277 YNLWLHVDAAWGGGLLMSR--KHRH---KLNG--------IERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMH 342 (511)
T ss_dssp HTCEEEEEETTGGGGGGCT--TTGG---GGTT--------GGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCC
T ss_pred cCCEEEEEccchhhHhhCh--hhhh---hccC--------CccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccC
Confidence 9999999999987544332 2221 1110 012345677999999744 67899888665443322 111
Q ss_pred cccC----------------------CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec--
Q 037587 300 SSFG----------------------LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK-- 354 (464)
Q Consensus 300 ~~~~----------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-- 354 (464)
..+. ....+...++..++. .+.+++..+++.+..+++.+.|++. |+++..
T Consensus 343 ~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g-----~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~ 417 (511)
T 3vp6_A 343 ASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNG 417 (511)
T ss_dssp CTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSS
T ss_pred CccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 1110 011233333333332 3456777788888889999999887 888765
Q ss_pred -CCccEEEEEecCcccccC--Chh-------HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHH
Q 037587 355 -SNAGLFCWVDMRHLLVSN--TFE-------AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVAL 422 (464)
Q Consensus 355 -~~~g~f~~~~l~~~~~~~--~~~-------~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l 422 (464)
+..+.++|.-.|...... ... ...++.+.|++ .|+.+.. ..+...+.+++|++++. .++++++.++
T Consensus 418 ~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~~ll 495 (511)
T 3vp6_A 418 EPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVG-YQPQGDKANFFRMVISNPAATQSDIDFLI 495 (511)
T ss_dssp CCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH-HTSCEEE-EEEETTEEEEEEECCCCTTCCHHHHHHHH
T ss_pred CCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh-cCCEEEE-EEEeCCceEEEEEEecCCCCCHHHHHHHH
Confidence 566655443334332211 000 12246666654 5765443 11111223579999943 6889999999
Q ss_pred HHHHHHHHhhC
Q 037587 423 QRIKVFAQSCN 433 (464)
Q Consensus 423 ~~l~~~l~~~~ 433 (464)
+.|+++-+..+
T Consensus 496 ~~i~~~~~~~~ 506 (511)
T 3vp6_A 496 EEIERLGQDLH 506 (511)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHhhh
Confidence 99998766543
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=206.62 Aligned_cols=300 Identities=11% Similarity=0.088 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh--hhcccCCC--cEEEEEec
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD--RDLKWRPG--VEIVPIHC 163 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~~g--~~~~~v~~ 163 (464)
++.+.+++.+.+.++ .+ +.|++|+|+++++..++..+ .+||+|++..++|.++. ..+... | .+++.++.
T Consensus 35 ~~~~~~~~~l~~~~~----~~-~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 107 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYN----AE-AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILEKG-KFAKSSTVLTA 107 (379)
T ss_dssp HHHHHHHHHHHHHHT----CS-EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHHHH-CCSSEEEEEEC
T ss_pred HHHHHHHHHHHHHhC----CC-CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHHHh-CCCCceEEEec
Confidence 455555555555444 33 68899999999999988654 69999999999986542 223333 4 47777776
Q ss_pred CCC------CC-cccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccccc
Q 037587 164 SSS------NG-FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVF 236 (464)
Q Consensus 164 ~~~------~~-~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~ 236 (464)
+.. .. ..+|++++++.+++. ++++|++++++||||.+++.+++++|.++|+++|+++|+|++++ .
T Consensus 108 ~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g-- 179 (379)
T 3ke3_A 108 ERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G-- 179 (379)
T ss_dssp EESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T--
T ss_pred cccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C--
Confidence 421 11 247999999998642 67889999999999999999999999999999999999999975 2
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--c-------------
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--S------------- 301 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~------------- 301 (464)
.. . ..+..+ +..+++.|++|.++ .+..+|+++++++ +.+.+.... .
T Consensus 180 -~~--~-~~~~~~-------------~~d~~~~s~~K~l~-~~~g~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 240 (379)
T 3ke3_A 180 -CV--W-LDMKEL-------------GIDVLISAPQKGWS-STPCAGLVMLSAA-AIKKVESTESNCFSLDLKQWLTIMR 240 (379)
T ss_dssp -TC--C-CCHHHH-------------TCSEEEECTTTTTC-SCCCEEEEEECHH-HHHHHHTCCCSCSTTCHHHHHHHHH
T ss_pred -Cc--c-cccccc-------------CCCEEEecchhhcC-CCCceEEEEECHH-HHHhhhcCCCCceeecHHHHHHHHH
Confidence 12 1 222222 34577889999986 3345899998544 433333210 0
Q ss_pred --------c-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ccEEEEEecCccc
Q 037587 302 --------F-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN---AGLFCWVDMRHLL 369 (464)
Q Consensus 302 --------~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~f~~~~l~~~~ 369 (464)
+ ++.+...+.++.++++.-. +..+++.+++++++++++.+.|+++|+++..+. ++....+..+.
T Consensus 241 ~~~~g~~~~~~t~~~~~~~a~~aal~~~~--~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-- 316 (379)
T 3ke3_A 241 AYENGGHAYHATMPTDSLRQFRDAILEAK--EIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER-- 316 (379)
T ss_dssp HHHTTSCCCSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC--
T ss_pred hhhccCCCCCCCCCHHHHHHHHHHHHHHH--HhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC--
Confidence 1 1445555566655554211 112566777888888999999999998876543 22223233321
Q ss_pred ccCChhHHHHHHHHHHHhcCeEEeCCCCCCC---CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 370 VSNTFEAEKELWKKIIFEVGLNISPGSSCHC---NEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 370 ~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~---~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+..+.. .|.++||.+.+|..+.. ...+.+||++.. .+++++++++++|++++++.
T Consensus 317 ------~~~~~~~-~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 317 ------DDMHKGS-AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp ------HHHHSSH-HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred ------cchHHHH-HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 0111223 34678999999886543 225789999975 68899999999999998765
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-25 Score=223.97 Aligned_cols=288 Identities=13% Similarity=0.056 Sum_probs=186.0
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEE
Q 037587 82 DYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPI 161 (464)
Q Consensus 82 ~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v 161 (464)
+.....++++.+|+ ++ .+ +++++|+|+++++..++.+++++||.|+++.|+|..+...+... |++++.+
T Consensus 55 ~~~~~~~~~~~la~-~g--------~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~-G~~~~~v 123 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HS--------DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDIS-QQEGHFI 123 (446)
T ss_dssp CSSHHHHHHHHHCS-CT--------TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHH-TCCEEEC
T ss_pred cchHHHHHHHHHHh-cC--------CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHc-CCeEEEE
Confidence 34455788888888 75 33 68999999999999999999999999999999999988888776 9999998
Q ss_pred ecCCCCC----cccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc-ccc
Q 037587 162 HCSSSNG----FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG-TVF 236 (464)
Q Consensus 162 ~~~~~~~----~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~-~~~ 236 (464)
+...+.+ +.+|++++ +. +++++|++++| |+||.+++ +++|+++|+++|+++|+||+|+. +.|
T Consensus 124 ~~~~~~~~~~~~~~d~~~l---~~------~~~~~v~~~~~-n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVNLSRL---NN------DGHKLVVLTYP-NYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EEEECTTTSSEEEEEC----------------CCEEEEESS-CTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred eCeeccccCcCCCCCHHHH---cC------CCceEEEEECC-CCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 8722223 56788877 22 27889999995 66999987 67888999999999999999986 223
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHH-HHHHHh-c--ccCCCChHHHHH
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVV-SAATKM-S--SFGLVSSQTQYL 312 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~-~~~~~~-~--~~~~~s~~~q~~ 312 (464)
.+. ..+...+ +..+++.|+||+++ ++.++||++++++.+. ..+... . ..++.+.....+
T Consensus 191 ~~~---~~~~~~~-------------g~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aa 253 (446)
T 2x3l_A 191 QGF---PDSTLNY-------------QADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMAS 253 (446)
T ss_dssp TTS---CCCGGGG-------------TCSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred CCC---CCChHHc-------------CCCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHH
Confidence 321 1222222 22378999999653 3344799998655332 122211 1 122233333323
Q ss_pred HHHHcCCchhhHHH-HHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeE
Q 037587 313 LSRMLSDKKFTCNY-MKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLN 391 (464)
Q Consensus 313 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~ 391 (464)
+..+++ ++... .++..+...+..+.+.+ .|+++..+..+.++|+.++. .. ..++...|. ++||.
T Consensus 254 l~~a~~---~l~~~g~~~~~~~~~~l~~~l~~----~g~~~~~~~~~~~l~i~~~~-~~------~~~l~~~L~-~~GI~ 318 (446)
T 2x3l_A 254 LESAAQ---FYKTYDSTLFFAKRAQLIECLEN----KGFEMLQVDDPLKLLIKYEG-FT------GHDIQNWFM-NAHIY 318 (446)
T ss_dssp HHHHHH---HHHHCCCHHHHHHHHHHHHHHHH----HTCEEEECSSTTEEEEECTT-SC------HHHHHHHHH-HTTEE
T ss_pred HHHHHH---HHHHhCHHHHHHHHHHHHHHHHH----cCCEECcCCCCeEEEEEeCC-cC------HHHHHHHHH-HCCCE
Confidence 222221 11110 01122222333333333 37888766555589998861 11 224666665 55999
Q ss_pred Ee-CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 392 IS-PGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 392 v~-pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+. +| .+++|++++. .+++++ +++++|+++++...
T Consensus 319 v~~~g-------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 319 LELAD-------DYQALAILPLWHHDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp ESEEC-------SSCEEEECCCCCTTCCC-CHHHHHHHHHTCCC
T ss_pred EEecC-------CCEEEEEeecCCCHHHH-HHHHHHHHHHHhhc
Confidence 97 44 3579999986 578889 99999999987664
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-24 Score=215.45 Aligned_cols=301 Identities=11% Similarity=0.062 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChH-HHHHHHHHHhcC--CCCeEEEcCCCCCChhhhcccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGST-AANETLMFCLAD--PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~-~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
.++.+.+.+++.+.+| ++++ +++|+|++ .++..++.++.. +|+.|+++.+.|+.+...++.. |++++.+++
T Consensus 132 ~~~~~~~~~~la~~~g----~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~-G~~~~~v~~ 205 (456)
T 2z67_A 132 YALTNKILESFFKQLG----LNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV-GMNMRLVET 205 (456)
T ss_dssp HHHHHHHHHHHHHHTT----CCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHHHHHcC----CCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHc-CCCceEEEE
Confidence 4455556666666555 4555 99999999 455545555433 6778999999999888888776 999999886
Q ss_pred CC-CCCcccCHHHHHHHH-HHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 164 SS-SNGFRITISALENAY-QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 164 ~~-~~~~~~d~~~l~~~i-~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
.+ ++++.+|+++|++++ +... ..++.+|++++||||||.+.+ +++|.++|+++|+++++|++|+...++..
T Consensus 206 ~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~~-- 278 (456)
T 2z67_A 206 VLDGDRVYVPVEDIENAIKKEIE--LGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYL-- 278 (456)
T ss_dssp EEETTEEECCHHHHHHHHHHHHH--TTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHH--
T ss_pred eccCCCCCcCHHHHHHHHHHHhh--CCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHhh--
Confidence 32 356889999999998 4211 126777888999999999955 67788888899999999999986433111
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCC-CC-hHHHHHHHHHcCC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL-VS-SQTQYLLSRMLSD 319 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~-~s-~~~q~~~~~~l~~ 319 (464)
+....... . ...+++.|++|.++ +++++||++++++.+.+.+......+. .+ .+.+.++...+.
T Consensus 279 --~~~~~~~~---------~-~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~- 344 (456)
T 2z67_A 279 --EKLKKAFK---------Y-RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG- 344 (456)
T ss_dssp --HHHHHHHT---------S-CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-
T ss_pred --HHHHHhhC---------C-CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-
Confidence 11111111 0 22356789999764 678999999966555544432221111 11 233333333332
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEec--CcccccCChhHHHHHHHHHHHhcCe---
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDM--RHLLVSNTFEAEKELWKKIIFEVGL--- 390 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l--~~~~~~~~~~~~~~l~~~ll~~~gI--- 390 (464)
.+.+++..+.+.+.++++.+.|++. |+.+.+++ + ++++.+ +.. ..++...|. ++||
T Consensus 345 ----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~-~v~~~~~~~~~--------~~~l~~~L~-~~gi~~~ 409 (456)
T 2z67_A 345 ----SKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-S-PIASCISVNSD--------PVEIAAKLY-NLRVTGP 409 (456)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-C-SSEEEEECSSC--------HHHHHHHHH-HTTEESC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-C-eEEEEEecccH--------HHHHHHHHH-HcCCCcc
Confidence 2345677778888889999999887 88777777 4 556666 321 124666665 5565
Q ss_pred EEe------CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 391 NIS------PGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 391 ~v~------pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
.+. +|..|.....+++|++++. .+++++++++++|++++
T Consensus 410 rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 410 RGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp EEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred eEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 443 2333333335799999985 68999999999998754
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-24 Score=211.96 Aligned_cols=280 Identities=18% Similarity=0.134 Sum_probs=184.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh----hcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR----DLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~~g~~~~~v 161 (464)
..+|++.+|++++ . +..++++++++++..++.+++++||.|++++|+|.++.. .+... |++++.+
T Consensus 84 ~~~le~~lA~l~g--------~--~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~~~~v 152 (430)
T 3ri6_A 84 VEDLEQRLKNLTG--------A--LGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSF-GIEVRFV 152 (430)
T ss_dssp HHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHC--------C--CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHc-CCEEEEe
Confidence 4677888888764 2 235566666799999999999999999999999987776 44556 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+...+.
T Consensus 153 ~~~-------d~~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~---- 212 (430)
T 3ri6_A 153 DVM-------DSLAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLL---- 212 (430)
T ss_dssp CTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTC----
T ss_pred CCC-------CHHHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC----
Confidence 864 78999888754 8999999999999999986 667888899999999999999843221
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEe--cCHHH-------------------HHHHHH-h
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYS--NNERV-------------------VSAATK-M 299 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~--~~~~~-------------------~~~~~~-~ 299 (464)
....+ +..+++.|+||.+|.+|..+|.++. .+... .+.... .
T Consensus 213 ---~~~~~-------------g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~ 276 (430)
T 3ri6_A 213 ---EAKRL-------------GVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVF 276 (430)
T ss_dssp ---CGGGG-------------TCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHH
T ss_pred ---ChHHc-------------CCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHH
Confidence 11111 4568899999999866655555544 22111 111111 1
Q ss_pred cccC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eecCC----------------ccEE
Q 037587 300 SSFG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR-CLKSN----------------AGLF 360 (464)
Q Consensus 300 ~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~----------------~g~f 360 (464)
..+. ..++....++... .+.+..+.++..++...+.+.|+++ ++. |..|. ||+.
T Consensus 277 ~~~g~~~~~~~a~l~l~~-------l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~ 349 (430)
T 3ri6_A 277 QNLGPSLSPHNAYLQSLG-------LETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSI 349 (430)
T ss_dssp HHHCCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred HhcCCCCCHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceE
Confidence 1222 2333333222221 1224445556667778888888876 454 44333 5558
Q ss_pred EEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC---------------------CCCCeEEEEeecCCHHHHH
Q 037587 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC---------------------NEPGWFRICFANITEETLQ 419 (464)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~---------------------~~~~~~Ris~~~~~~e~l~ 419 (464)
+|++++.. ....+++..+ +-.++.+.+|..+.. ..++++|||++. |+.+
T Consensus 350 lsf~l~~~------~~~~~~~~~l-~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~---E~~~ 419 (430)
T 3ri6_A 350 LTFELESK------EASYRFMDAL-KLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI---EEIE 419 (430)
T ss_dssp EEEECSSH------HHHHHHHHHC-SSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS---SCHH
T ss_pred EEEEECCH------HHHHHHHHhC-CcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHH
Confidence 99999721 2222333333 234566677776652 135789999985 4455
Q ss_pred HHHHHHHHHH
Q 037587 420 VALQRIKVFA 429 (464)
Q Consensus 420 ~~l~~l~~~l 429 (464)
.+++.|++++
T Consensus 420 dl~~dl~~al 429 (430)
T 3ri6_A 420 DLKEDILQAL 429 (430)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 5666666554
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=207.14 Aligned_cols=316 Identities=11% Similarity=0.163 Sum_probs=210.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcEEEeCChHHHHHHHHHHh----c---------CC------CC-eEEE
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKLVLTAGSTAANETLMFCL----A---------DP------GD-AFLL 138 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~l----~---------~~------gd-~Vlv 138 (464)
|....+..++.+.+.+++.+.+| +++ +.+++|+|+++++..++.++ + .+ |+ .|++
T Consensus 132 ~~~~~~~~~le~~~~~~la~~~g----~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~ 207 (497)
T 2qma_A 132 WDQASSATYVEQKVVNWLCDKYD----LSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVC 207 (497)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTT----CCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEE
T ss_pred hhhChHHHHHHHHHHHHHHHHhC----CCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEE
Confidence 44333456777787777777765 344 78999999999999988873 3 12 46 7999
Q ss_pred cCCCCCChhhhcccCCCc---EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHH
Q 037587 139 PTPYYPGFDRDLKWRPGV---EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLI 215 (464)
Q Consensus 139 ~~p~y~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~ 215 (464)
+.++|..+...+... |. +++.+|++ .++.+|+++|++.+++....+.++.+|++++|+||||... ++++|.
T Consensus 208 s~~~h~s~~~~~~~~-g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~---~l~~I~ 281 (497)
T 2qma_A 208 SKKSHFTVQKSASWM-GLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAID---DLDFIA 281 (497)
T ss_dssp ETTSCTHHHHHHHHT-TSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC---CHHHHH
T ss_pred CCCchHHHHHHHHHc-CCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCC---CHHHHH
Confidence 999998887777665 65 78999986 3678999999999976433333355888899999999974 477888
Q ss_pred HHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHH
Q 037587 216 NFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA 295 (464)
Q Consensus 216 ~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~ 295 (464)
++|+++|+++++|++|+...+... +.. ....+ ....+++.|++|.++.| .++|+++++++...+.
T Consensus 282 ~l~~~~~~~l~vD~a~~~~~~~~~---~~~---~~~gi--------~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~ 346 (497)
T 2qma_A 282 DMAVKHDMWMHVDGAYGGALILSS---HKS---RLKGV--------ERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKF 346 (497)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGST---TGG---GGTTG--------GGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGG
T ss_pred HHHHHcCCEEEEehhhhHHHHhCc---chH---hhcCc--------ccCCEEEEcchhccCCC-cceEEEEEeCHHHHHH
Confidence 999999999999999987544221 111 11111 02235678999998745 6999999866543222
Q ss_pred HHHhcccC-C-----C-------------ChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-c
Q 037587 296 ATKMSSFG-L-----V-------------SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL-K 354 (464)
Q Consensus 296 ~~~~~~~~-~-----~-------------s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~ 354 (464)
+.....+. . . ..+.+.++...+. .+.+++..+.+.+.++++.+.|++. ++++. +
T Consensus 347 ~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 421 (497)
T 2qma_A 347 LLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG-----PKALGDMYDHLLAQTLEVADMIRTNDQFELLAE 421 (497)
T ss_dssp GCC--------------------CCSCCCTHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSC
T ss_pred hcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcC
Confidence 11101110 0 0 1223333334443 2335566677778889999999986 78774 5
Q ss_pred CCccEEEEEecCcccccCChh-HHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHHHHHHHh
Q 037587 355 SNAGLFCWVDMRHLLVSNTFE-AEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-AN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 355 ~~~g~f~~~~l~~~~~~~~~~-~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+.++ ++++++.... .... ...++...+. +.|+.+.++..+. +.+++|+++ +. .++++++.++++|++++++
T Consensus 422 ~~~~-~v~f~~~~~~--~~~~~l~~~l~~~l~-~~G~~~~~~~~~~--g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 422 PSLS-TVLFRATHET--ADLDELNKALRLEAL-TRGIAVLGETIVD--GKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp CSSS-EEEEEECCSS--SCHHHHHHHHHHHHH-HHTSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCce-EEEEEEcCCc--cCHHHHHHHHHHHHH-hCCCEEEEeeEEC--CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 6666 6666765321 1111 1123555554 5699887654432 356899998 33 6899999999999998865
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=197.69 Aligned_cols=292 Identities=17% Similarity=0.189 Sum_probs=191.8
Q ss_pred CcHHHHHHH-HHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEe
Q 037587 85 GFPDAKKEL-VKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 85 g~~~lr~~i-a~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~ 162 (464)
...+|++++ |++++ ..+++++++|+++++..++.++ +++||.|+++.|+|..+...+... |++++.++
T Consensus 37 ~~~~l~~~~~a~~~g---------~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~-G~~~~~v~ 106 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQ---------NRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWC-GLEPYFID 106 (377)
T ss_dssp HHHHHHHHHHHHTST---------TCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHhC---------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEe
Confidence 358899999 98874 2567899999999999999998 899999999999999998888777 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCc--eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLK--VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~--~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+++ ++|.+|++++++++... + +++|+ |+||+|...+ +++|.++|+ +|+++|+|++|+.......
T Consensus 107 ~~~-~~~~~d~~~l~~~i~~~-----~~~tk~v~---~~~~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~~- 172 (377)
T 3ju7_A 107 ISI-DDWYMDKTVLWDKIEEL-----KEEVAIVV---PYATFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNGG- 172 (377)
T ss_dssp BCT-TTCSBCHHHHHHHHHHH-----GGGEEEEC---CBCGGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEETT-
T ss_pred cCC-ccCCcCHHHHHHHHhcC-----CCCceEEE---EECCCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeECC-
Confidence 874 46889999999988321 4 88766 6789999876 566777888 9999999999973221111
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcC--CCcCCCCCccEEEEEEecCHHHHHHHHHhccc--------------CC
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYS--LSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--------------GL 304 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S--~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--------------~~ 304 (464)
..+... ..+ +.+.| .+|.++ +| +.|+++++++.+.+.++.+..+ ..
T Consensus 173 ---~~~g~~-----------~~d--~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~ 234 (377)
T 3ju7_A 173 ---MHYGQD-----------FSG--MIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCK 234 (377)
T ss_dssp ---EETTTT-----------CSS--EEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCC
T ss_pred ---EeccCC-----------CCc--EEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCC
Confidence 111000 012 33445 479998 46 6889988888777766665432 12
Q ss_pred CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC---CeeecCCc--c--EEEEEecCcccccCChhHH
Q 037587 305 VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG---IRCLKSNA--G--LFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 305 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---~~~~~~~~--g--~f~~~~l~~~~~~~~~~~~ 377 (464)
++.+.++++...+.. ++...++.++.++++.+.|.+++ +.+.+..+ . .|+.+.++... ..
T Consensus 235 ~~~~~aa~~~~~l~~-------l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 301 (377)
T 3ju7_A 235 MSEYAAAIGIATMKK-------WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV------RN 301 (377)
T ss_dssp CCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS------CH
T ss_pred CCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh------hH
Confidence 444444444444432 23333344445555666776663 33332221 1 13344554311 11
Q ss_pred HHHHHHHHHhcCeEEeCCCC--CCCC--------C---------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 378 KELWKKIIFEVGLNISPGSS--CHCN--------E---------PGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~--f~~~--------~---------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.++...| +++||.++.+.. ++.. . .+.+|+.+.. +++++++.+++.|++++.+.
T Consensus 302 ~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 302 KQVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp HHHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred HHHHHHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 2455555 678999987652 1110 0 2369999976 79999999999999888764
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=202.01 Aligned_cols=321 Identities=12% Similarity=0.146 Sum_probs=210.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-------C-CCC------eEEEcCCCCCC
Q 037587 80 FQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-------D-PGD------AFLLPTPYYPG 145 (464)
Q Consensus 80 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-------~-~gd------~Vlv~~p~y~~ 145 (464)
|....+..++.+.+.+++.+.+| ++++++++|+|+++++..++.++. + +|+ .|+++.++|+.
T Consensus 140 ~~~s~~~~~le~~~~~~la~l~g----~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s 215 (515)
T 2jis_A 140 YEIAPVFVLMEEEVLRKLRALVG----WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS 215 (515)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHT----CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhhchHHHHHHHHHHHHHHHHhC----CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH
Confidence 43333445666666666666555 457899999999999998888763 2 575 89999999988
Q ss_pred hhhhcccCCCc---EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCC
Q 037587 146 FDRDLKWRPGV---EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKR 222 (464)
Q Consensus 146 ~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~ 222 (464)
+...+... |. +++.+|+++ ++.+|+++|++++++....+.++++|++++|+||||.+.+ +++|.++|+++|
T Consensus 216 ~~~~~~~~-g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g 289 (515)
T 2jis_A 216 IQKGAAFL-GLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHG 289 (515)
T ss_dssp HHHHHHHT-TSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcC
Confidence 88877766 77 899999863 5789999999999865444556899999999999999865 778888999999
Q ss_pred eEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCH--HHHHHHHHhc
Q 037587 223 IHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE--RVVSAATKMS 300 (464)
Q Consensus 223 ~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~--~~~~~~~~~~ 300 (464)
+++++|++|+...+..+ .+.. .+... ....+++.|++|.++ .+.++|+++++++ .+...+....
T Consensus 290 ~~l~vD~a~~~~~~~~~--~~~~---~~~g~--------~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~ 355 (515)
T 2jis_A 290 LWLHVDAAWGGSVLLSQ--THRH---LLDGI--------QRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQA 355 (515)
T ss_dssp CEEEEEETTGGGGGGCT--TTGG---GGTTG--------GGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC--
T ss_pred CeEEEehhhhhHHHhCh--hhHh---hcCCC--------ccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCc
Confidence 99999999997655433 2221 11110 123467889999987 4467999998765 3332211000
Q ss_pred ccC------------------C----CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec-CC
Q 037587 301 SFG------------------L----VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK-SN 356 (464)
Q Consensus 301 ~~~------------------~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~ 356 (464)
.+. . ...+.+.++..++. .+.+++..+...+.++++.+.|++. |+++.. +.
T Consensus 356 ~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~ 430 (515)
T 2jis_A 356 SYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG-----DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPE 430 (515)
T ss_dssp -------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCS
T ss_pred hhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Confidence 000 0 11334444444443 2335666677778888999999887 887764 44
Q ss_pred ccEEEEEecCccccc----CChhHHH-----HHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe-ec-CCHHHHHHHHHHH
Q 037587 357 AGLFCWVDMRHLLVS----NTFEAEK-----ELWKKIIFEVGLNISPGSSCHCNEPGWFRICF-AN-ITEETLQVALQRI 425 (464)
Q Consensus 357 ~g~f~~~~l~~~~~~----~~~~~~~-----~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l 425 (464)
.+.+++..+|..... ....... .+...+. +.|+........ ....+++|+++ +. .++++++.++++|
T Consensus 431 ~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~-~~G~~~~~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l 508 (515)
T 2jis_A 431 FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMV-KEGSMMIGYQPH-GTRGNFFRVVVANSALTCADMDFLLNEL 508 (515)
T ss_dssp SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHH-HHTSCEEEEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHH
T ss_pred eeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHH-hcCCEEEEEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 555555444432211 1111111 2444454 457654311100 11246899999 44 6899999999999
Q ss_pred HHHHHh
Q 037587 426 KVFAQS 431 (464)
Q Consensus 426 ~~~l~~ 431 (464)
++++++
T Consensus 509 ~~~~~~ 514 (515)
T 2jis_A 509 ERLGQD 514 (515)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 988754
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-22 Score=196.22 Aligned_cols=280 Identities=16% Similarity=0.168 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcc-----cCCCcEEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLK-----WRPGVEIVPI 161 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~~g~~~~~v 161 (464)
.+|++.++++++ .+.+++++++++++.. +..++++||.|+++.|+|++....+. .. |++++.+
T Consensus 70 ~~l~~~la~l~g----------~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~-g~~~~~v 137 (400)
T 3nmy_A 70 FAYERCVAALEG----------GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTA-GLDFSFV 137 (400)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHH-CCEEEEE
T ss_pred HHHHHHHHHHhC----------CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhc-CeEEEEE
Confidence 566667776653 2356777777999998 56788999999999999985554432 24 8999988
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+ |++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|....+..+
T Consensus 138 ~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~-- 199 (400)
T 3nmy_A 138 DLT-------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQRP-- 199 (400)
T ss_dssp CTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCG--
T ss_pred CCC-------CHHHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCCh--
Confidence 764 78999888754 7899999999999999986 78888899999999999999975322211
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEE--EEecCHHHHHHHHHhccc--CCCChHHHHHHHHHc
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGM--IYSNNERVVSAATKMSSF--GLVSSQTQYLLSRML 317 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~--l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l 317 (464)
. .+ +.++++.|+||.+|.+|.++|. ++..++.+.+.+...... ...++....++...+
T Consensus 200 --~---~~-------------g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l 261 (400)
T 3nmy_A 200 --L---SL-------------GADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGL 261 (400)
T ss_dssp --G---GG-------------TCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHH
T ss_pred --h---hc-------------CCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhH
Confidence 1 11 4558899999999877777755 555566665555443322 234566655555555
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eecC----------------CccEEEEEecCcccccCChhHHHH
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR-CLKS----------------NAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~----------------~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
+. +..+.+...++...+.+.|+++ .+. +..| ..|.+++++++... .....
T Consensus 262 ~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-----~~~~~ 329 (400)
T 3nmy_A 262 KT-------LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-----DAAKR 329 (400)
T ss_dssp TT-------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-----HHHHH
T ss_pred hH-------HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-----HHHHH
Confidence 43 2334455566777788888776 332 3221 23568889886321 11112
Q ss_pred HHHHHHHhcCeEEeCCCCCC----------C-----------CCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 380 LWKKIIFEVGLNISPGSSCH----------C-----------NEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~----------~-----------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
++..+ +-.++.+..|..+. . -.++.+|+|++. |+.+.+++.|+++++
T Consensus 330 ~~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 330 FCEKT-ELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI---EDLGDLRGDLERALV 397 (400)
T ss_dssp HHHHC-SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHC
T ss_pred HHHcC-CcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHh
Confidence 22222 22233344443322 0 125789999996 345556667777765
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=201.65 Aligned_cols=208 Identities=15% Similarity=0.124 Sum_probs=147.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
..++++.+|++++ . +++++++|+++++.+++.+++++||.|+++.|.|.+.... ++.. |+++..+
T Consensus 84 ~~~le~~lA~l~g--------~--~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~-G~~v~~v 152 (415)
T 2fq6_A 84 HFSLQQAMCELEG--------G--AGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GVTTSWF 152 (415)
T ss_dssp HHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CcEEEEE
Confidence 3568888888875 2 3577788999999999999999999999999999876643 3445 9999888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh--CCeEEEEeccccccccCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS--KRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~--~~~~lI~Deay~~~~~~~~ 239 (464)
+.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|+...+ ..
T Consensus 153 ~~~-------d~~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~-~~ 215 (415)
T 2fq6_A 153 DPL-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL-FK 215 (415)
T ss_dssp CTT-------CGGGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS-SC
T ss_pred CCC-------CHHHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc-CC
Confidence 753 67888887754 7899999999999999986 6778889999 9999999999985322 11
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccE-EEEEEecCHHHHHHHHHhcc-cC-CCChHHHHHHHHH
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR-VGMIYSNNERVVSAATKMSS-FG-LVSSQTQYLLSRM 316 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlR-iG~l~~~~~~~~~~~~~~~~-~~-~~s~~~q~~~~~~ 316 (464)
++ .+ +..+++.|+||.+|.+|.+ +||++++++ +.+.+..... +. ..++....++...
T Consensus 216 -----p~-~~-------------g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~~~~~G~~~~~~~a~~~~~~ 275 (415)
T 2fq6_A 216 -----AL-DF-------------GIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQMVDADTAYITSRG 275 (415)
T ss_dssp -----GG-GG-------------TCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred -----cc-cc-------------CCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence 11 12 4568899999999977755 699998654 3333333222 22 2344433333222
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
++ .+..+.+...++...+.+.|++.
T Consensus 276 l~-------~l~~r~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 276 LR-------TLGVRLRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hh-------HHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 23444455566667777777765
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=198.28 Aligned_cols=303 Identities=12% Similarity=0.086 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCc---EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhh--------hcccCCC
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNK---LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDR--------DLKWRPG 155 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~---i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~~g 155 (464)
.+|.+...+++.+.+| ++.+. .+.++++++++..++.++++|||+|+++++.|.++.. .+... |
T Consensus 99 ~~lE~~a~~~~a~l~g----~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~-g 173 (490)
T 2a7v_A 99 DEIELLCQRRALEAFD----LDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT-S 173 (490)
T ss_dssp THHHHHHHHHHHHHTT----CCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------
T ss_pred HHHHHHHHHHHHHHcC----CCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHc-C
Confidence 4666444455555544 45542 3455678999999999999999999999999865431 12223 5
Q ss_pred cE--EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc-
Q 037587 156 VE--IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS- 232 (464)
Q Consensus 156 ~~--~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~- 232 (464)
.. ++.+++++ ..+.+|++++++.+... ++++|+++.|+||+. . ++++|.++|+++|+++++|+++.
T Consensus 174 ~~~~~~~~~vd~-~~~~iD~d~le~~l~~~-----~~klIi~~~s~~~~~--~---dl~~i~~ia~~~g~~livD~Ah~~ 242 (490)
T 2a7v_A 174 IFFESMPYKLNP-KTGLIDYNQLALTARLF-----RPRLIIAGTSAYARL--I---DYARMREVCDEVKAHLLADMAHIS 242 (490)
T ss_dssp -------CCBCT-TTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGH
T ss_pred CeEEEEeccccc-ccCCcCHHHHHHHHhhc-----CCcEEEEcCCCCCCc--c---cHHHHHHHHHHcCCEEEEcccccc
Confidence 44 34444443 35689999999998653 678888888898863 2 47889999999999999999975
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCH--------------HHHHHHHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE--------------RVVSAATK 298 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~--------------~~~~~~~~ 298 (464)
++.+.+. . .+.. . ...+++.|+||++ .|.|.|+++++++ .+.+.+++
T Consensus 243 glv~~g~--~-~~~~---~-----------~aDiv~~S~hK~l--~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~ 303 (490)
T 2a7v_A 243 GLVAAKV--I-PSPF---K-----------HADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINF 303 (490)
T ss_dssp HHHHTTS--S-CCGG---G-----------TCSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHH
T ss_pred ccccCCc--C-CCCC---C-----------CCCEEEECCcccC--ccccchheeeccchhcccccccchhhHHHHHHHHH
Confidence 2222222 1 1111 1 1236789999987 4667799998653 23444443
Q ss_pred hcccC---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCccEEEEEecCcccccCCh
Q 037587 299 MSSFG---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-SNAGLFCWVDMRHLLVSNTF 374 (464)
Q Consensus 299 ~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~f~~~~l~~~~~~~~~ 374 (464)
..... ..+.....++..++... ..+..++..+++.++++++.+.|.+.|+++.. +..++++|++++....
T Consensus 304 ~~~~g~qggp~~~~iaAla~Al~~~--~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~---- 377 (490)
T 2a7v_A 304 AVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGL---- 377 (490)
T ss_dssp HHTTTTCCSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTC----
T ss_pred HhcccCCCCchHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCC----
Confidence 32221 12333333333333321 11234566777788889999999999998875 3345688999864210
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCC---CCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHHhh
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCH---CNEPGWFRICFAN-----ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~---~~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~ 432 (464)
. . +.+..+|++.||.+..+..++ +..++.+||+... .++++++++++.|.+++...
T Consensus 378 ~-~-~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 378 D-G-ARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp C-H-HHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred C-H-HHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 1 124555678899998543332 2235679997732 47899999999999988754
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=198.17 Aligned_cols=322 Identities=11% Similarity=0.074 Sum_probs=220.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCCCCC------CCCcEEEeCChHHHHHHHHHHhcC-------------------C
Q 037587 78 ALFQDYHGFPDAKKELVKLMARIRGNKVKF------DPNKLVLTAGSTAANETLMFCLAD-------------------P 132 (464)
Q Consensus 78 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~------~~~~i~it~G~~~al~~~~~~l~~-------------------~ 132 (464)
..|....+..++++.+++++.+.+|.+... .....++|+|+++++..++.+... +
T Consensus 108 ~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 108 FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 456666677899999999999988732110 013678999999999988877532 5
Q ss_pred CCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHH
Q 037587 133 GDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELN 212 (464)
Q Consensus 133 gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~ 212 (464)
++.|+++.++|..+...+... |.+++.+|++ .++.+|+++|+++|++....+..+.+|+++.++|+||.+ ++++
T Consensus 188 ~~~v~~s~~~H~s~~~~~~~~-g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~i---d~l~ 261 (481)
T 4e1o_A 188 RLVAYASDQAHSSVEKAGLIS-LVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAF---DCLS 261 (481)
T ss_dssp TEEEEEETTSCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CCHH
T ss_pred CeEEEEcCcchHHHHHHHHhC-CCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCc---CCHH
Confidence 679999999999888888766 9999999986 467899999999998754444457888999999999988 4588
Q ss_pred HHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH
Q 037587 213 HLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV 292 (464)
Q Consensus 213 ~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~ 292 (464)
+|+++|+++|+++++|++|+...+..+ .+.. +.... .....+..+++|.++.| .-+|+++..++..
T Consensus 262 ~I~~la~~~~~~lhvDaA~g~~~~~~~--~~~~---~~~gi--------~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~ 327 (481)
T 4e1o_A 262 ELGPICAREGLWLHIDAAYAGTAFLCP--EFRG---FLKGI--------EYADSFTFNPSKWMMVH-FDCTGFWVKDKYK 327 (481)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGGGGSG--GGGG---GGTTG--------GGCSEEEECHHHHSSCC-SSCEEEEESBHHH
T ss_pred HHHHHHHHcCCeEEeehhhHHHHHhCh--hhHH---HhcCc--------ccCCEEEEChHHhcCCC-CceEEEEEeCHHH
Confidence 899999999999999999986533322 1222 11110 01234567999998755 4578887766654
Q ss_pred HH-HHHHhcccC------------------C--CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 037587 293 VS-AATKMSSFG------------------L--VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI 350 (464)
Q Consensus 293 ~~-~~~~~~~~~------------------~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 350 (464)
.. .+.....+. + ...+.+.++...+. .+.+++..+...++++++.+.|++. |+
T Consensus 328 l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 402 (481)
T 4e1o_A 328 LQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHVRHGTEMAKYFESLVRNDPSF 402 (481)
T ss_dssp HHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred HHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 32 111111110 0 12344444444442 3346667777888889999999987 88
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVF 428 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~ 428 (464)
++..+....+++++++.. .....++..++.++..+.+.|+... +..++|++++. .++++++.++++|+++
T Consensus 403 ~~~~~~~~~~v~f~~~~~-----~~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~di~~~~~~i~~~ 474 (481)
T 4e1o_A 403 EIPAKRHLGLVVFRLKGP-----NSLTENVLKEIAKAGRLFLIPATIQ---DKLIIRFTVTSQFTTRDDILRDWNLIRDA 474 (481)
T ss_dssp ECCSCCCSSEEEEEESSC-----HHHHHHHHHHHHHHCSSBCEEEEET---TEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEecCCceeEEEEEeCCc-----hHHHHHHHHHHHhCCeEEEEeeEEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 886544444777777531 1223457777765533555554322 35689999865 4789999999999998
Q ss_pred HHhh
Q 037587 429 AQSC 432 (464)
Q Consensus 429 l~~~ 432 (464)
+++.
T Consensus 475 ~~~l 478 (481)
T 4e1o_A 475 ATLI 478 (481)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-22 Score=200.90 Aligned_cols=351 Identities=14% Similarity=0.124 Sum_probs=211.9
Q ss_pred CCCCCCCCceEEeeccccc--c--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAENQ--L--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||..+... + .+|.+.+++.+...... ......|+. ....++++++++.+.+..+
T Consensus 56 ~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--------~~~~~~~~~-~~~~~l~~~la~~l~~~~~-- 124 (472)
T 1ohv_A 56 YLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVST--------FINRPALGI-LPPENFVEKLRESLLSVAP-- 124 (472)
T ss_dssp EEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHH--------HHCCCCTTT-SCBTTHHHHHHHTGGGGCC--
T ss_pred EEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcc--------ccccccccc-ccHHHHHHHHHHHHHHhCC--
Confidence 4444456678999876432 3 35667777766422100 011123432 2357899999997765432
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--------C-----------------CC---CeEEEcCCCCCChhhhcccCCCc
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--------D-----------------PG---DAFLLPTPYYPGFDRDLKWRPGV 156 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--------~-----------------~g---d~Vlv~~p~y~~~~~~~~~~~g~ 156 (464)
...++|++++|+++++..+++++. . || +.|++.+++|+++...+....|.
T Consensus 125 --~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~ 202 (472)
T 1ohv_A 125 --KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHS 202 (472)
T ss_dssp --TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCS
T ss_pred --CCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCC
Confidence 356799999999999999998773 1 46 89999999998876544222122
Q ss_pred E-------------EEEEecC--C-CCC--c-----ccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHHH
Q 037587 157 E-------------IVPIHCS--S-SNG--F-----RITISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQELN 212 (464)
Q Consensus 157 ~-------------~~~v~~~--~-~~~--~-----~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l~ 212 (464)
. .+++|.. + ... + ..|++.|++.+++....+.++++|++...+|++|. ..+.+.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~ 282 (472)
T 1ohv_A 203 KAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFR 282 (472)
T ss_dssp CHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHH
T ss_pred ccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHH
Confidence 1 1122210 0 000 1 12578888888653211226777666555788996 56789999
Q ss_pred HHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH
Q 037587 213 HLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV 292 (464)
Q Consensus 213 ~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~ 292 (464)
+|.++|+++|+++|+||+|.++.+.+. +.....+ . . ...+.+.||||.+ +.| ||++ ++ .+
T Consensus 283 ~l~~l~~~~g~lli~DEv~~g~g~~g~---~~~~~~~-g---------v-~~~~Di~t~sK~~-l~G---G~~~-~~-~~ 342 (472)
T 1ohv_A 283 KLRDISRKHGCAFLVDEVQTGGGSTGK---FWAHEHW-G---------L-DDPADVMTFSKKM-MTG---GFFH-KE-EF 342 (472)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-C---------C-SSCCSEEEECGGG-SSE---EEEE-CG-GG
T ss_pred HHHHHHHHhCCEEEEeCcccCCCCCCC---chhcccc-C---------C-CCCCCEEEEcccc-ccC---CccC-ch-hh
Confidence 999999999999999999986433221 1122111 0 0 0002244899995 445 7776 33 33
Q ss_pred HHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC--C----CeeecCCccEEEEEe
Q 037587 293 VSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA--G----IRCLKSNAGLFCWVD 364 (464)
Q Consensus 293 ~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g----~~~~~~~~g~f~~~~ 364 (464)
.. ......+ +..+++++.++.++|+... + +...+.++++++++.+.|+++ + +....+.+ .|++++
T Consensus 343 ~~-~~~~~~~~T~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g-~~~~~~ 415 (472)
T 1ohv_A 343 RP-NAPYRIFNTWLGDPSKNLLLAEVINIIK---R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRG-TFCSFD 415 (472)
T ss_dssp SC-SSSSSSCCSSSSCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEET-TEEEEE
T ss_pred cc-cccccccCccCccHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCc-eEEEEE
Confidence 21 1111111 2356788887777665211 0 122344455555555555543 1 33344554 477778
Q ss_pred cCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 365 MRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 365 l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
++.. ....+++..|+ ++||.+.|+. .+++||+++. .+++++++++++|++++++.
T Consensus 416 ~~~~------~~~~~~~~~l~-~~Gv~~~~~g------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 416 TPDE------SIRNKLISIAR-NKGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp CSSH------HHHHHHHHHHH-HTTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred eCCh------hHHHHHHHHHH-HCCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 7631 22345777776 5799999852 4689998876 78999999999999998764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=194.53 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=175.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCCCChh-------
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL---TAGSTAANETLMFCLADPGDAFLLPT-PYYPGFD------- 147 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~------- 147 (464)
.|++. |..+|++.+|++++ .+ ..++ ++|+++++..++.++++|||+|++++ |.|..+.
T Consensus 69 ~y~~~-~~~~Le~~lA~l~g--------~e--~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~ 137 (427)
T 3i16_A 69 GYGDI-GRDSLDAVYARVFN--------TE--SALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITE 137 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT--------CS--EEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSC
T ss_pred CCCHH-HHHHHHHHHHHHhC--------Cc--ceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccc
Confidence 34443 46778888888875 22 2345 78889999999999999999999999 9998776
Q ss_pred ----hhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeC----CCCCCCCCCCHHHHHHHHHHHh
Q 037587 148 ----RDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN----PSNPLGTAMTHQELNHLINFSK 219 (464)
Q Consensus 148 ----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~----P~NPtG~~~s~~~l~~i~~~~~ 219 (464)
..+... |++++.+++++ ++.+|++++++++++ .+++++|++++ |+||||.+ .++++|+++|+
T Consensus 138 ~~~~~~l~~~-G~~~~~v~~~~--~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~ 207 (427)
T 3i16_A 138 NSNMGSLKEF-GINYKQVDLKE--DGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVK 207 (427)
T ss_dssp CCSSCCTGGG-TCEEEECCCCT--TSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHH
T ss_pred cchHHHHHHc-CCEEEEecCcc--CCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHH
Confidence 334445 99999998864 356899999999872 12899999999 99999876 78999999999
Q ss_pred h--CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHH
Q 037587 220 S--KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAA 296 (464)
Q Consensus 220 ~--~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~ 296 (464)
+ +|+++|+|++|+.+.+... + . .. +..++++|+||.+|.+| .+.||++++ +.+.+.+
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~--p-~---~~-------------gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l 267 (427)
T 3i16_A 208 NIRKDIICFVDNCYGEFMDTKE--P-T---DV-------------GADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKT 267 (427)
T ss_dssp HHCTTSEEEEECTTTTTSSSSC--G-G---GG-------------TCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHH
T ss_pred HhCCCCEEEEECCCccccccCC--c-c---cc-------------CCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHH
Confidence 9 9999999999986543322 1 1 11 34588999999998555 667999995 5555555
Q ss_pred HHh-cccC---CCCh-HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCcc----EEEEEecCc
Q 037587 297 TKM-SSFG---LVSS-QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAG----LFCWVDMRH 367 (464)
Q Consensus 297 ~~~-~~~~---~~s~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g----~f~~~~l~~ 367 (464)
+.. .... ..++ +. ++..+++. .+....++++..+++..+.+.|+++|++++|+.+. ..+.+.+..
T Consensus 268 ~~~~~~~~~g~~~~~~~~--~a~~~l~g----l~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~ 341 (427)
T 3i16_A 268 SYRLTVPGIGGECGSTFG--VVRSMYQG----LFLAPHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFND 341 (427)
T ss_dssp HHHHSCTTTGGGCCCCTT--CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSS
T ss_pred HHhcccCccCccCCccHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECC
Confidence 442 1111 0111 11 01111211 12245566777888899999999999988765332 255566642
Q ss_pred ccccCChhHHHHHHHHHH
Q 037587 368 LLVSNTFEAEKELWKKII 385 (464)
Q Consensus 368 ~~~~~~~~~~~~l~~~ll 385 (464)
.+...++++.+.
T Consensus 342 ------~~~~~~f~~~l~ 353 (427)
T 3i16_A 342 ------KDKLIEFCKGIQ 353 (427)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHh
Confidence 133445666654
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-21 Score=190.25 Aligned_cols=292 Identities=13% Similarity=0.129 Sum_probs=190.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-------cCCCCeEEEcCCCCCChhhhcc
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-------ADPGDAFLLPTPYYPGFDRDLK 151 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-------~~~gd~Vlv~~p~y~~~~~~~~ 151 (464)
.|.+..+..++++++|++++ .+ ++++++++++++..++.++ +++||.|+++.|+|..+...+.
T Consensus 29 ~~~~~~~~~~l~~~la~~~~--------~~--~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~ 98 (390)
T 3b8x_A 29 MFTMGEYVKQYETQFAKTFG--------SK--YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQ 98 (390)
T ss_dssp CCSSCHHHHHHHHHHHHHHT--------CS--EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHC--------CC--cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHH
Confidence 34455567899999999986 22 5677777778999999998 7899999999999999988887
Q ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccc
Q 037587 152 WRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIY 231 (464)
Q Consensus 152 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay 231 (464)
.. |++++.++++++ .+.+|++.+++.+++ ++++|+++| ++|.. .++++|.++|+++|+++|+|++|
T Consensus 99 ~~-g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~---~~~~~i~~l~~~~~~~li~D~a~ 164 (390)
T 3b8x_A 99 QY-GLRVKFVDIDIN-TLNIDIESLKEAVTD------STKAILTVN---LLGNP---NNFDEINKIIGGRDIILLEDNCE 164 (390)
T ss_dssp HT-TCEEEEECBCTT-TCSBCHHHHHHHCCT------TEEEEEEEC---GGGCC---CCHHHHHHHHTTSCCEEEEECTT
T ss_pred Hc-CCEEEEEecCcc-ccCcCHHHHHHHhCc------CCeEEEEEC---CccCh---hhHHHHHHHHHHcCCEEEEECcC
Confidence 76 999999998753 478999999998754 789998885 45554 45888999999999999999999
Q ss_pred cccccCCCCCCccchhhhhhccCcCCCCCCCCcEE-EEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC-------
Q 037587 232 SGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH-IVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG------- 303 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi-~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~------- 303 (464)
+....... .. + . ....+. +....+|.++ +| +.|+++++++.+.+.++......
T Consensus 165 ~~g~~~~~----~~---~-g---------~~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~ 225 (390)
T 3b8x_A 165 SMGATFNN----KC---A-G---------TFGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPK 225 (390)
T ss_dssp CTTCEETT----EE---T-T---------SSSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCS
T ss_pred cccCEECC----cc---c-c---------cccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccc
Confidence 83211111 01 1 0 001111 1123355554 34 34999987755554443322110
Q ss_pred --------------------------CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC-
Q 037587 304 --------------------------LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS- 355 (464)
Q Consensus 304 --------------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~- 355 (464)
.++.+...++...+ +++++..+..++.++++.+.|+++ |+.+..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 298 (390)
T 3b8x_A 226 KNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-------KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQET 298 (390)
T ss_dssp EETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC
T ss_pred cccccccccccccccccceeccccccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC
Confidence 03334443333332 234566666777888889999886 7776543
Q ss_pred -CccE-EEEEecCcccccCChhHHHHHHHHHHHhcCeEEeC---CCCCCC-C---------C----------CCeEEEEe
Q 037587 356 -NAGL-FCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISP---GSSCHC-N---------E----------PGWFRICF 410 (464)
Q Consensus 356 -~~g~-f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~p---g~~f~~-~---------~----------~~~~Ris~ 410 (464)
.+++ .+++.++.... ....++...| .++||.+++ |+.+.. . . .+.+||++
T Consensus 299 ~~~~~~~~~i~~~~~~~----~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 373 (390)
T 3b8x_A 299 GESSWFGFSFIIKKDSG----VIRKQLVENL-NSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGN 373 (390)
T ss_dssp SBCCCCEEEEEECTTSC----CCHHHHHHHH-HHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEEC
T ss_pred CCcccEEEEEEecCcCc----ccHHHHHHHH-HHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeC
Confidence 2343 25556552100 0122455555 568999986 321111 0 0 13599999
Q ss_pred ec-CCHHHHHHHHHHH
Q 037587 411 AN-ITEETLQVALQRI 425 (464)
Q Consensus 411 ~~-~~~e~l~~~l~~l 425 (464)
+. .++++++.+++.|
T Consensus 374 ~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 374 HQIELFDEIDYLREVL 389 (390)
T ss_dssp CSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhh
Confidence 87 7999999998876
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=197.82 Aligned_cols=320 Identities=11% Similarity=0.084 Sum_probs=215.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCC-----CCCcEEEeCChHHHHHHHHHHhcC-------------------CCC
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKF-----DPNKLVLTAGSTAANETLMFCLAD-------------------PGD 134 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-----~~~~i~it~G~~~al~~~~~~l~~-------------------~gd 134 (464)
.|....+..++++.+++++.+.+|.+... .....++|+|+++++..++.+... +++
T Consensus 104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 46555567899999999999887732110 013689999999999888777521 346
Q ss_pred eEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHH
Q 037587 135 AFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHL 214 (464)
Q Consensus 135 ~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i 214 (464)
.|+++.++|..+...+... |++++.+|+++ ++ +|+++|+++|++....+..+.+|+++.++|+||.+ +++++|
T Consensus 184 ~vi~s~~~H~s~~~~~~~~-g~~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~---~~l~~I 256 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGLLG-GVKLRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAF---DYLDEC 256 (475)
T ss_dssp EEEEETTSCHHHHHHHHHH-TCEEEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CCHHHH
T ss_pred EEEECCCchHHHHHHHHHc-CCceEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCc---CCHHHH
Confidence 8999999999888888776 99999999863 56 99999999998754444457888999999999998 458889
Q ss_pred HHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH-H
Q 037587 215 INFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV-V 293 (464)
Q Consensus 215 ~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~-~ 293 (464)
+++|+++|+++++|++|+...+..+ .+.. ..... .....+..+++|.++ ....+|+++..++.. .
T Consensus 257 ~~la~~~~~~lhvD~A~~~~~~~~~--~~~~---~~~gi--------~~~Ds~~~~~hK~l~-~p~g~g~l~~~~~~~l~ 322 (475)
T 3k40_A 257 GPVGNKHNLWIHVDAAYAGSAFICP--EYRH---LMKGI--------ESADSFNFNPHKWML-VNFDCSAMWLKDPSWVV 322 (475)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGSG--GGGG---GGTTG--------GGCSEEEECHHHHSS-CCSSCEEEEESSGGGC-
T ss_pred HHHHHHhCCeEEEeHHhHHHHHhCH--hhHH---HhcCc--------ccCCEEEECchhccC-CCCceEEEEEeCHHHHH
Confidence 9999999999999999986433222 1111 11110 022456789999886 335578888765433 2
Q ss_pred HHHHHhcccC----------------CC----ChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 037587 294 SAATKMSSFG----------------LV----SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRC 352 (464)
Q Consensus 294 ~~~~~~~~~~----------------~~----s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 352 (464)
+.+.....+. .. ..+.+.++...+. .+.+++..++..++.+++.+.|++. |+++
T Consensus 323 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l 397 (475)
T 3k40_A 323 NAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHIRRHCNFAKQFGDLCVADSRFEL 397 (475)
T ss_dssp --------------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred HHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 2221111110 00 1233333333332 3345667777888889999999987 8888
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~ 430 (464)
..+.....+++.++.. .....++..++.++.++.+.|+..+ +..++|++++. .++++++.++++|+++++
T Consensus 398 ~~~~~~~iv~f~~~~~-----~~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 469 (475)
T 3k40_A 398 AAEINMGLVCFRLKGS-----NERNEALLKRINGRGHIHLVPAKIK---DVYFLRMAICSRFTQSEDMEYSWKEVSAAAD 469 (475)
T ss_dssp SSCCBTTEEEEEESSC-----HHHHHHHHHHHHHHTSCBCEEEEET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCCceEEEEEEeCCc-----hHHHHHHHHHHHhCCcEEEEeeEEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 7544434677776531 1223467777776544455554433 35689999875 478999999999999887
Q ss_pred hh
Q 037587 431 SC 432 (464)
Q Consensus 431 ~~ 432 (464)
+.
T Consensus 470 ~~ 471 (475)
T 3k40_A 470 EM 471 (475)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=194.70 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=124.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~v 161 (464)
..+++++++++++ .+ +.|++ +++++++..++.+++++||.|+++.|+|+++...+ ... |++++.+
T Consensus 60 ~~~l~~~la~~~g--------~~-~~v~~-~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 128 (421)
T 2ctz_A 60 VDVLEKRLAALEG--------GK-AALAT-ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL-GIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHHT--------CS-EEEEE-SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHT-TCEEEEC
T ss_pred HHHHHHHHHHHhC--------CC-ceEEe-cCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CCEEEEE
Confidence 4788899998885 22 34544 45599999999999999999999999998776654 445 9999888
Q ss_pred -ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccc-cccccCCC
Q 037587 162 -HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIY-SGTVFDSP 239 (464)
Q Consensus 162 -~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay-~~~~~~~~ 239 (464)
+.+ |++++++.+++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++| +. .+...
T Consensus 129 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~-g~~~~ 191 (421)
T 2ctz_A 129 SREE-------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMG-GYLLR 191 (421)
T ss_dssp CTTC-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGG-GTSCC
T ss_pred CCCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccc-cccCC
Confidence 643 78899888754 8899999999999999988 788899999999999999999 52 23222
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEec
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSN 288 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~ 288 (464)
.+ .. +..+++.|+||.+|.+|.|+|++++.
T Consensus 192 -----~~-~~-------------~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 192 -----PL-AW-------------GAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp -----GG-GG-------------TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred -----cc-cc-------------CCeEEEECCcccccCCCCcEEEEEEe
Confidence 11 11 34578899999999889999988874
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-21 Score=190.41 Aligned_cols=251 Identities=16% Similarity=0.108 Sum_probs=175.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCCCChhh------
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL---TAGSTAANETLMFCLADPGDAFLLPT-PYYPGFDR------ 148 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~------ 148 (464)
.|++. |..+|++.+|++++ . +..++ ++|+++++..++.+++++||.|+++. |.|..+..
T Consensus 55 ~y~~~-~~~~Le~~lA~l~g--------~--e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g 123 (409)
T 3jzl_A 55 GYDDE-GRDTLERVYATVFK--------T--EAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRK 123 (409)
T ss_dssp CTTCH-HHHHHHHHHHHHHT--------C--SEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSS
T ss_pred CCChh-HHHHHHHHHHHHhC--------C--CcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhccc
Confidence 45443 46778888888875 2 33445 88999999999999999999999998 99998874
Q ss_pred ----hcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeC----CCCCCCCCCCHHHHHHHHHHHhh
Q 037587 149 ----DLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN----PSNPLGTAMTHQELNHLINFSKS 220 (464)
Q Consensus 149 ----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~----P~NPtG~~~s~~~l~~i~~~~~~ 220 (464)
.++.. |++++.+++++ ++.+|++++++++++ ++++|++++ |+||||.+ .++++|+++|++
T Consensus 124 ~~~~~l~~~-G~~~~~v~~~~--~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~~ 191 (409)
T 3jzl_A 124 QGQGSLKDF-HIGYSSVPLLE--NGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVKN 191 (409)
T ss_dssp SSSSCTGGG-TCEEEECCCCT--TSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHHH
T ss_pred chhhHHHHc-CCEEEEeCCCC--CCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHHh
Confidence 34445 99999998864 567899999998754 789999999 99999987 689999999999
Q ss_pred --CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHH
Q 037587 221 --KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAAT 297 (464)
Q Consensus 221 --~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~ 297 (464)
+|+++|+|++|+.+.+... + . .. +..++++|+||.+|.+| .+.||++++ +.+.+.+.
T Consensus 192 ~~~~~~livD~a~~~~~~~~~--p-~---~~-------------g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~ 251 (409)
T 3jzl_A 192 INPEVIVFVDNCYGEFVEYQE--P-P---EV-------------GADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCG 251 (409)
T ss_dssp HCTTCEEEEECTTCTTTSSCC--S-G---GG-------------TCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHH
T ss_pred hCCCCEEEEeCCcccccccCC--c-c---cc-------------CCeEEEECccccCCccCCceEEEEEeC-HHHHHHHH
Confidence 9999999999987543322 1 1 11 34588999999998555 446999995 55555444
Q ss_pred Hh-cc--c--CCCChHH-HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc----cEEEEEecCc
Q 037587 298 KM-SS--F--GLVSSQT-QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNA----GLFCWVDMRH 367 (464)
Q Consensus 298 ~~-~~--~--~~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----g~f~~~~l~~ 367 (464)
.. .. . ...+.+. +.++...+ +....++++..++...+.+.|+++|+++.|... ...+.+.+..
T Consensus 252 ~~~~~~~~g~~~g~~~~~~~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~ 324 (409)
T 3jzl_A 252 YRLTTPGIGREAGASLYSLLEMYQGF-------FLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHN 324 (409)
T ss_dssp HHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSC
T ss_pred HHhccccccccccccHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCC
Confidence 32 21 1 0111111 22222222 224455667778889999999999998866432 2245555542
Q ss_pred ccccCChhHHHHHHHHHH
Q 037587 368 LLVSNTFEAEKELWKKII 385 (464)
Q Consensus 368 ~~~~~~~~~~~~l~~~ll 385 (464)
.+...++++.|.
T Consensus 325 ------~~~~~~~~~~L~ 336 (409)
T 3jzl_A 325 ------KEKMVAFAQAIQ 336 (409)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHH
Confidence 133445666664
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=194.41 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=174.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCCCChh-------
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL---TAGSTAANETLMFCLADPGDAFLLPT-PYYPGFD------- 147 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~------- 147 (464)
.|++. |..+|++.+|++++ .+..++ ++|+++++..++.++++|||+|++++ |.|..+.
T Consensus 70 ~Y~~~-g~~~Le~~lA~l~g----------~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~ 138 (427)
T 3hvy_A 70 GYNDI-GRDSLDRVYANIFN----------TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDD 138 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCT
T ss_pred CCCch-hHHHHHHHHHHHhC----------CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhcccc
Confidence 35444 56788888888875 233455 78889999999999999999999999 9998775
Q ss_pred ----hhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeC----CCCCCCCCCCHHHHHHHHHHHh
Q 037587 148 ----RDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN----PSNPLGTAMTHQELNHLINFSK 219 (464)
Q Consensus 148 ----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~----P~NPtG~~~s~~~l~~i~~~~~ 219 (464)
..++.. |++++.++. +++.+|++++++++++ .+++++|++++ |+||||.+ .++++|+++|+
T Consensus 139 ~~~~~~l~~~-G~~~~~v~~---~~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia~ 207 (427)
T 3hvy_A 139 SKKVGSLREY-GVKYKMVDL---KDGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSIR 207 (427)
T ss_dssp TCCSCCTGGG-TCEEEECCC---BTTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHHH
T ss_pred chhhhHHHHc-CCEEEEecC---CCCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccH---HHHHHHHHHHH
Confidence 334445 999999887 2567899999999873 12899999999 99999876 78999999999
Q ss_pred h--CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHH
Q 037587 220 S--KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAA 296 (464)
Q Consensus 220 ~--~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~ 296 (464)
+ +|+++|+|++|+.+.+... + . .. +..++++|+||.+|.+| .+.||++++ +.+.+.+
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~--p-~---~~-------------gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l 267 (427)
T 3hvy_A 208 EVNENVIVFVDNCYGEFVEEKE--P-T---DV-------------GADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQA 267 (427)
T ss_dssp HHCSSSEEEEECTTCTTTSSSC--G-G---GG-------------TCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHH
T ss_pred HhCCCCEEEEECCccccccCCC--C-c---cc-------------CCeEEEECCcccccccccceEEEEEEC-HHHHHHH
Confidence 9 8999999999986543322 1 1 11 34588999999998444 556999985 5555555
Q ss_pred HHhc-ccC---CCCh-HH-HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCcc----EEEEEecC
Q 037587 297 TKMS-SFG---LVSS-QT-QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAG----LFCWVDMR 366 (464)
Q Consensus 297 ~~~~-~~~---~~s~-~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g----~f~~~~l~ 366 (464)
+... ... ..++ +. ..++...+ +....++++..++...+.+.|+++|+++.|..+. ..+.+.+.
T Consensus 268 ~~~~~~~~~g~~~~~~~~~a~~~~~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 268 TFRVTVPGIGGECGSTFGVMRSLYEGL-------FMAPHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFN 340 (427)
T ss_dssp HHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECS
T ss_pred HHHhhcCCcccccCCCHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCC
Confidence 4422 111 0111 21 22222211 1234566677788889999999999988765332 25566664
Q ss_pred cccccCChhHHHHHHHHHH
Q 037587 367 HLLVSNTFEAEKELWKKII 385 (464)
Q Consensus 367 ~~~~~~~~~~~~~l~~~ll 385 (464)
. .+...++++.+.
T Consensus 341 ~------~~~~~~f~~~l~ 353 (427)
T 3hvy_A 341 D------EKKLIDFIKGIQ 353 (427)
T ss_dssp S------HHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHhc
Confidence 2 133345666553
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-24 Score=217.47 Aligned_cols=339 Identities=9% Similarity=0.012 Sum_probs=207.0
Q ss_pred CCCCCCCCceEEeeccccc--c--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLAENQ--L--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+|||..+..+ + .+|.+.+++.+.... .....|+. ....+|.+.|++++.
T Consensus 93 ~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~-----------~~~~~~~~-~~~~~Lae~L~~~~p------ 154 (465)
T 2yky_A 93 RFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV-----------GLNLSTQT-ENEALFAEAVCDRFP------ 154 (465)
Confidence 4444456678999887553 3 346666666654211 11123432 234677777777652
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcc---cCCCc--EEEEEecCCCCCcccCHHHHH
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLK---WRPGV--EIVPIHCSSSNGFRITISALE 177 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~---~~~g~--~~~~v~~~~~~~~~~d~~~l~ 177 (464)
..+.+++++++++++..+++.+. ..++.|++.+++|+++...+. ...|+ .++.++. .|++.|+
T Consensus 155 ---~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~ 224 (465)
T 2yky_A 155 ---SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTA 224 (465)
Confidence 34689999999999999998752 345899999999987654332 01133 2233321 2678888
Q ss_pred HHHHHHhhcCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcC
Q 037587 178 NAYQQAQTLNLKVKGVLITNPSNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNID 256 (464)
Q Consensus 178 ~~i~~~~~~~~~~~~vil~~P~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (464)
+.+++. +.++++|++...+++||.+. +.+.+++|.++|+++|+++|+||+|. +..+ . .... +.
T Consensus 225 ~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g-~---~~a~-~~------- 288 (465)
T 2yky_A 225 DLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS-G---GGAQ-EM------- 288 (465)
Confidence 888631 13677766643356699655 57889999999999999999999998 5221 1 1111 11
Q ss_pred CCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-------hcccCCCChHHHHHHHHHcCCchhhHHHHHH
Q 037587 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-------MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKE 329 (464)
Q Consensus 257 ~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 329 (464)
.+....+.||||.+| .|+|+||++++++ +.+.+.. ....+..++++++++.+.|+.-.- +.
T Consensus 289 -----~gv~pDi~t~sK~lg-~G~piG~v~~~~~-i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-----~~ 356 (465)
T 2yky_A 289 -----LGISADLTTLGKYIG-GGMSFGAFGGRRD-LMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT-----RQ 356 (465)
Confidence 122233559999999 5999999999654 4443433 112234677888877766653210 11
Q ss_pred HHHHHHHHHHHHHHHHHh----CCCeeecCCccEEEEEecCc-cccc------CChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 330 NRKRLRKRKEMLVSGLKV----AGIRCLKSNAGLFCWVDMRH-LLVS------NTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~----~g~~~~~~~~g~f~~~~l~~-~~~~------~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
..+.++++.+++.+.|++ +++.......|.++|+.++. .... .+.....+++..++ ++||++.|+. |
T Consensus 357 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~-~ 434 (465)
T 2yky_A 357 AASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRG-M 434 (465)
Confidence 223333333444444433 34333333456788888864 1100 00111235677776 6799999875 3
Q ss_pred CCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 399 HCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 399 ~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
. . +++. .+++++++++++|++++++.+
T Consensus 435 ~----~---~s~~-~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 435 Y----A---LSLE-IADAGRDAFAEALADFIGEQR 461 (465)
Confidence 2 1 5654 589999999999999987654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=195.92 Aligned_cols=286 Identities=14% Similarity=0.127 Sum_probs=179.8
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChH---HHHHHHHHHhcCCCCeEEEcCCCCCChhhhcc----cCCCcE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGST---AANETLMFCLADPGDAFLLPTPYYPGFDRDLK----WRPGVE 157 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~---~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~~g~~ 157 (464)
|..++.+.+.+.+.+.+| ++++++++++|++ +++.+++ ..++||+|+++.|+|+.+...++ .. |++
T Consensus 105 g~~~~~~~~~~~la~~~g----~~~~~i~~~~g~taa~ea~~~a~--~~~~gd~Viv~~~~h~s~~~~~~~~a~~~-G~~ 177 (438)
T 1wyu_A 105 GVLQATFEYQTMIAELAG----LEIANASMYDGATALAEGVLLAL--RETGRMGVLVSQGVHPEYRAVLRAYLEAV-GAK 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHT----SSEECSCBSSHHHHHHHHHHHHH--HHHTCCEEEEETTSCHHHHHHHHHHHHHT-TCE
T ss_pred hHHHHHHHHHHHHHHHhC----CCccceEEeCcHHHHHHHHHHHH--hcCCCCEEEEcCccCHhHHHHHHHHHHHC-CCE
Confidence 434444444444444434 5677899999999 5554443 24689999999999988875543 35 999
Q ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecc-cccccc
Q 037587 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEI-YSGTVF 236 (464)
Q Consensus 158 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Dea-y~~~~~ 236 (464)
++.++.+ ++.+|+++ +. +++++|++++| ||||.+.+ +++|+++|+++|+++|+|.. .+ +
T Consensus 178 v~~v~~~---~~~~d~~~----i~------~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a---~ 237 (438)
T 1wyu_A 178 LLTLPLE---GGRTPLPE----VG------EEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLS---L 237 (438)
T ss_dssp EEEECCB---TTBCCCCC----CC------TTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTG---G
T ss_pred EEEEcCc---CCccCHHH----hC------CCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhh---c
Confidence 9999862 34677666 32 37899999999 99999974 77788899999999996622 21 2
Q ss_pred CCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC----CCCccEEEEEEecCHHHHHHH----------------
Q 037587 237 DSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF----SMPGFRVGMIYSNNERVVSAA---------------- 296 (464)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~----g~~GlRiG~l~~~~~~~~~~~---------------- 296 (464)
+.. . ....+ +..+++.| +|.| ++.|.|+||++++++ +.+.+
T Consensus 238 g~~--~--~~~~~-------------g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~ 298 (438)
T 1wyu_A 238 GVL--K--PPGAY-------------GADIAVGD-GQSLGLPMGFGGPHFGFLATKKA-FVRQLPGRLVSETVDVEGRRG 298 (438)
T ss_dssp GTB--C--CHHHH-------------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGG-GGGGCCSCCEEEEEBTTSCEE
T ss_pred cCc--C--CCccC-------------CCCEEEEC-CcccCCCccCCCCCeeEEEEcHH-HHHhCCCceeccccccCCCcc
Confidence 211 1 11112 22244545 5544 456779999998654 32221
Q ss_pred ------------HHhcccCCC---ChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEE
Q 037587 297 ------------TKMSSFGLV---SSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLF 360 (464)
Q Consensus 297 ------------~~~~~~~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f 360 (464)
+......++ +.....++...+.... .+.+++..+.+.++++++.+.|++. |+++..+. ++|
T Consensus 299 ~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~ 375 (438)
T 1wyu_A 299 FILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFF 375 (438)
T ss_dssp EEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBC
T ss_pred eeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeE
Confidence 101111112 2222221111122111 2336677778888999999999998 89887654 334
Q ss_pred EEEecCcccccCChhHHHHHHHHHHHhcCeEE--eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNI--SPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v--~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
.++.+.... ...+++..|. ++||.+ .++..|. ++++||+++. .+++++++++++|++++
T Consensus 376 ~~~~~~~~~------~~~~~~~~L~-~~gi~v~~~~~~~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 376 NEFALALPK------DPEAVRRALA-ERGFHGATPVPREYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp SEEEEECSS------CHHHHHHHHH-HTTCCCCEECCTTSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCC------CHHHHHHHHH-HCCceeccccccccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 333332110 1235777776 569999 7777664 6799999986 58999999999998764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=204.29 Aligned_cols=312 Identities=13% Similarity=0.041 Sum_probs=193.1
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh-cccCCCcEEEEEec
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD-LKWRPGVEIVPIHC 163 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~~g~~~~~v~~ 163 (464)
-..++++.+|++++ .+ ..+++++|+++++..++.+++++||.|+++.|+|..+... +... |++++.++.
T Consensus 174 ~i~e~e~~lA~~~g--------ae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~-Ga~~v~v~~ 243 (730)
T 1c4k_A 174 PAVAAEKHAARVYN--------AD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMA-GGRPVYLQT 243 (730)
T ss_dssp HHHHHHHHHHHHTT--------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTT-CCEEEEECE
T ss_pred HHHHHHHHHHHHHC--------CC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHC-CCEEEEEeC
Confidence 35788899998876 33 4588999999999999999999999999999999888777 6655 999988876
Q ss_pred CCCCCcc----cCHHHH-----HHHHHHH-hh--cCCce-EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecc
Q 037587 164 SSSNGFR----ITISAL-----ENAYQQA-QT--LNLKV-KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEI 230 (464)
Q Consensus 164 ~~~~~~~----~d~~~l-----~~~i~~~-~~--~~~~~-~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Dea 230 (464)
..+ .|. +|++.| ++++++. .. ...++ +++++++| ||+|.+.+ +++|+++|+++++++|+||+
T Consensus 244 ~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeA 318 (730)
T 1c4k_A 244 NRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSA 318 (730)
T ss_dssp EEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECT
T ss_pred Ccc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcc
Confidence 432 333 688888 6665431 00 01112 88999999 69999975 77889999999999999999
Q ss_pred cccc-ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEE-EEEEecCHHH--------HHHHHHh-
Q 037587 231 YSGT-VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRV-GMIYSNNERV--------VSAATKM- 299 (464)
Q Consensus 231 y~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRi-G~l~~~~~~~--------~~~~~~~- 299 (464)
|+.. .|.+.. +..+.... ... +.+.++++++.|+||++ +|++. |+++.+++.+ ...++..
T Consensus 319 h~~~~~f~~~~-~g~~~l~~-~~~-----g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~ 389 (730)
T 1c4k_A 319 WVGYEQFIPMM-RNSSPLLI-DDL-----GPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSF 389 (730)
T ss_dssp TCCGGGSSGGG-GGGCTTSC-CCC-----CTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHH
T ss_pred cccccccCccc-CCcCcccc-ccc-----CCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHH
Confidence 9743 233210 00011111 000 00235789999999986 55554 5564433321 1112211
Q ss_pred ccc--CCCChHHHHHHHH---HcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh--CCCeeecCC----------------
Q 037587 300 SSF--GLVSSQTQYLLSR---MLSDKKFTCNYMKENRKRLRKRKEMLVSGLKV--AGIRCLKSN---------------- 356 (464)
Q Consensus 300 ~~~--~~~s~~~q~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~~~~~~~---------------- 356 (464)
..+ .+++....+++.. .+... ...+..+++.+....+++.|.+ .|+++..+.
T Consensus 390 ~~~~stsp~~~~iaal~aA~~~l~~~-----~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~ 464 (730)
T 1c4k_A 390 NLFMSTSPFYPMYAALDVNAAMQEGE-----AGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 464 (730)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHSHH-----HHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHT
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHhhhCCCeEEcccccccccccccccccccc
Confidence 111 2233333333322 23221 1233344555666667777777 377665432
Q ss_pred ---------------------cc-EE-----EEEecCcc------cccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 037587 357 ---------------------AG-LF-----CWVDMRHL------LVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEP 403 (464)
Q Consensus 357 ---------------------~g-~f-----~~~~l~~~------~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~ 403 (464)
.+ ++ +.+.+|.. ..... ....++...| +++||.+... +.
T Consensus 465 ~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g-~~~~~l~~~L-~e~GI~v~~~------~~ 536 (730)
T 1c4k_A 465 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFG-VPATIVANYL-RDHGIIPEKS------DL 536 (730)
T ss_dssp TCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSC-CCHHHHHHHH-HHTTCCCSEE------CS
T ss_pred ccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccC-CCHHHHHHHH-HHCCcEEEEC------CC
Confidence 11 12 45555421 00111 1122455555 5679988653 24
Q ss_pred CeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 404 GWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 404 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+.+|++++. .++++++.++++|.++.+.+.
T Consensus 537 ~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 537 NSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 679999876 789999999999999987664
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=189.81 Aligned_cols=254 Identities=17% Similarity=0.136 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCCCChhhhc----------ccCCCc
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPT-PYYPGFDRDL----------KWRPGV 156 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~~----------~~~~g~ 156 (464)
..++++.+.+.+.+|. .....+++++ ++++++..++.+++++||.|+++. |+|..+...+ +.. |+
T Consensus 65 ~~~~~l~~~la~~~g~--~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~-G~ 140 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGA--EAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEY-NI 140 (431)
T ss_dssp HHHHHHHHHHHHHTTC--SEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGG-TC
T ss_pred hhHHHHHHHHHHHhCC--Ccccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHc-CC
Confidence 3456666666555441 1112233355 668999999999999999999998 9999887544 334 99
Q ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEe-CCCCCCCCCCCHHHHHHHHHHHhh--CCeEEEEeccccc
Q 037587 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLIT-NPSNPLGTAMTHQELNHLINFSKS--KRIHIVSDEIYSG 233 (464)
Q Consensus 157 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~-~P~NPtG~~~s~~~l~~i~~~~~~--~~~~lI~Deay~~ 233 (464)
+++.++.++ ++.+|++++++++++ ++++|+++ +||||+|..++.+++++|+++|++ +|+++|+||+|+.
T Consensus 141 ~~~~v~~~~--~~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~ 212 (431)
T 3ht4_A 141 GYNAVPLTE--GGLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGE 212 (431)
T ss_dssp EEEECCBCT--TSSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred EEEEeCCCC--CCCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChh
Confidence 999999864 478999999998864 89999998 589999999999999999999999 9999999999997
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCC-CccEEEEEEecCHHHHHHHHHh-ccc--C-CC-Ch
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM-PGFRVGMIYSNNERVVSAATKM-SSF--G-LV-SS 307 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~-~GlRiG~l~~~~~~~~~~~~~~-~~~--~-~~-s~ 307 (464)
+.+... + . .+ +..++++|+||.+|. .+...||++++ +.+.+.+... ... . .. ++
T Consensus 213 ~~~~~~--~-~---~~-------------g~Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~ 272 (431)
T 3ht4_A 213 FIEEQE--P-C---HV-------------GADLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGAS 272 (431)
T ss_dssp TSSSCC--G-G---GT-------------TCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCC
T ss_pred hccCCC--c-c---cc-------------CCeEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCcc
Confidence 654322 1 1 11 334889999999652 11333999995 4555544432 221 1 01 11
Q ss_pred HH-HHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCc----cEEEEEecCcccccCChhHHHHHHH
Q 037587 308 QT-QYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNA----GLFCWVDMRHLLVSNTFEAEKELWK 382 (464)
Q Consensus 308 ~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----g~f~~~~l~~~~~~~~~~~~~~l~~ 382 (464)
+. ..++...+ +....+.++..++...+.+.|+++|+++.|... +..+.+.++. .....++++
T Consensus 273 ~~~~~~~~~~l-------~~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~------~~~~~~~~~ 339 (431)
T 3ht4_A 273 LYSLQEMYQGF-------FLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDD------KDRMIAFCQ 339 (431)
T ss_dssp CSCSHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCC------HHHHHHHHH
T ss_pred HHHHHHHHhHh-------hhHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCC------HHHHHHHHH
Confidence 11 12222211 123445566777888899999999888765422 2355566652 123345666
Q ss_pred HHHH
Q 037587 383 KIIF 386 (464)
Q Consensus 383 ~ll~ 386 (464)
.+..
T Consensus 340 ~l~~ 343 (431)
T 3ht4_A 340 AIQY 343 (431)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6643
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=198.04 Aligned_cols=178 Identities=14% Similarity=0.156 Sum_probs=129.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
..++++.++++++ . .+.+++++|+++++..++.+++++||.|+++.|+|.++...+... |++++.++.+.
T Consensus 207 v~~~ee~la~l~G--------~-d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~-G~~~v~v~~~~ 276 (755)
T 2vyc_A 207 FGESEKYAARVFG--------A-DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLT-GAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHT--------C-SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHH-CCEEEEECCCB
T ss_pred HHHHHHHHHHHhC--------C-CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHc-CCEEEEEeCCC
Confidence 4567777777765 2 346889999999999999999999999999999999888877766 99999998753
Q ss_pred CCCcc----c-----CHHHHHHHHHHHh----hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 166 SNGFR----I-----TISALENAYQQAQ----TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 166 ~~~~~----~-----d~~~l~~~i~~~~----~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
+ .|. + |++.+++++++.. +.+.++++++++|| ||+|.+.+ +++|+++|+++++++++||+|+
T Consensus 277 ~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~ 351 (755)
T 2vyc_A 277 N-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWY 351 (755)
T ss_dssp C-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTC
T ss_pred C-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCc
Confidence 2 333 4 8999999997521 12334568999999 79999975 7778999999999999999997
Q ss_pred cc-ccCCCCCCccchhhhh--hccCcCCCCCCCCcEEEEcCCCcCCCCCccE-EEEEEecC
Q 037587 233 GT-VFDSPSSSFISIMEAV--MDRNIDESDDLWSRIHIVYSLSKDFSMPGFR-VGMIYSNN 289 (464)
Q Consensus 233 ~~-~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlR-iG~l~~~~ 289 (464)
.. .|.....+...+ .. .+. ..++++++.|+||++ +|++ .|++++++
T Consensus 352 ~~~~~~~~~~~~~~~--~g~~aD~-------~~~~~iv~~S~hK~L--~g~~~g~~i~~~~ 401 (755)
T 2vyc_A 352 GYARFNPIYADHYAM--RGEPGDH-------NGPTVFATHSTHKLL--NALSQASYIHVRE 401 (755)
T ss_dssp TTGGGCGGGTTSSSS--CSCCCCC-------SSBEEEEEEETTTSS--SCCTTCEEEEEEC
T ss_pred hhcccCcccCCcchh--cCCcCCc-------cCCCeEEEECccccc--cCcCCeeeeeecC
Confidence 53 232110000111 11 111 236788999999986 5655 56776644
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-18 Score=178.76 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=125.6
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~ 164 (464)
-..++++.+|++++ ....+++++|++.++..++.+++++||.|+++.++|.++...+... |++++.++.+
T Consensus 196 ~i~eaE~~lA~~fG---------a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~ls-Ga~pv~v~~~ 265 (715)
T 3n75_A 196 PHKEAEQYIARVFN---------ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMS-DVTPIYFRPT 265 (715)
T ss_dssp HHHHHHHHHHHHHT---------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHS-CCEEEEECCC
T ss_pred HHHHHHHHHHHHhC---------CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHc-CCEEEEEecc
Confidence 35789999999986 3456788999999999999999999999999999999998888776 9999999876
Q ss_pred CCCCccc---------CHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 165 SSNGFRI---------TISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 165 ~~~~~~~---------d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
. +.|.+ |++.+++++++... ..+++++++++| ||+|.+++. ++|.++|+++ .+++||+|+...
T Consensus 266 ~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl---~~I~ela~~~--~livDEAH~~~~ 337 (715)
T 3n75_A 266 R-NAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNT---DFIKKTLDVK--SIHFDSAWVPYT 337 (715)
T ss_dssp B-CTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECH---HHHHHHCCCS--EEEEECTTCTTG
T ss_pred c-cccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCH---HHHHHHhCcC--cEEEcccccccc
Confidence 4 34554 89999999975210 112348999999 999999874 5566667655 378999998642
Q ss_pred -cCCCCCCccchhhhhhccCcCCCCCCCCcE-EEEcCCCcCCCCCcc-EEEEEEecCH
Q 037587 236 -FDSPSSSFISIMEAVMDRNIDESDDLWSRI-HIVYSLSKDFSMPGF-RVGMIYSNNE 290 (464)
Q Consensus 236 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v-i~l~S~SK~~g~~Gl-RiG~l~~~~~ 290 (464)
|.+. +.....+... ...+.+ +++.|+||+++ |+ ..|+++++++
T Consensus 338 ~f~~~---~~~~~al~~g-------~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~ 383 (715)
T 3n75_A 338 NFSPI---YEGKCGMSGG-------RVEGKVIYETQSTHKLLA--AFSQASMIHVKGD 383 (715)
T ss_dssp GGSGG---GTTSSTTSSS-------CCTTCEEEEEECHHHHSS--CCTTCEEEEEESC
T ss_pred ccCCc---cccccccccC-------cCCCEEEEEEeccccccc--CCCCeeEEEeCch
Confidence 3221 1111111000 012343 66899999974 43 3588877544
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=162.73 Aligned_cols=288 Identities=14% Similarity=0.092 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC-CcEEE-eCChHHHHHHHHHHhcCC--CCeEEEcCCCCCCh--hhhcccCCCcEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDP-NKLVL-TAGSTAANETLMFCLADP--GDAFLLPTPYYPGF--DRDLKWRPGVEIVP 160 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~-~~i~i-t~G~~~al~~~~~~l~~~--gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~ 160 (464)
.+.|+.++++++ +++ .+|++ |.|+|+++++++..++.+ ||+|++...++.+. ...++.. |..++.
T Consensus 61 ~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~-G~~~~~ 131 (377)
T 3e77_A 61 NNTENLVRELLA--------VPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKF-GTINIV 131 (377)
T ss_dssp HHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTT-SEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHh-CCceEE
Confidence 456777777775 443 57888 589999999999999865 89988766554322 2234444 887777
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+. ++..+++.++..+ .+++++|.+++-.|.||.+.|. +|+++|+++++|.+.+ ++..
T Consensus 132 ~~~~~--~~~~~~~~~~~~i------~~~t~lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~q~---~g~~- 191 (377)
T 3e77_A 132 HPKLG--SYTKIPDPSTWNL------NPDASYVYYCANETVHGVEFDF--------IPDVKGAVLVCDMSSN---FLSK- 191 (377)
T ss_dssp SCCCS--SSCSCCCGGGCCC------CTTCSCEEEESEETTTTEECSS--------CCCCTTCCEEEECTTT---TTSS-
T ss_pred eccCC--CcCCCCChHHhcc------CCCccEEEEeCccCchheEchh--------hhccCCCEEEEEcccc---cCCC-
Confidence 77643 3345556554433 2478889998888999999885 3678899999999997 4433
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH-------------HHHHHHhcccCCCCh
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV-------------VSAATKMSSFGLVSS 307 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~-------------~~~~~~~~~~~~~s~ 307 (464)
+ .++..+ + +++.|..|.+|.+| +|+++.+++.+ ....+....+++++.
T Consensus 192 -~-id~~~~-------------~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v 252 (377)
T 3e77_A 192 -P-VDVSKF-------------G--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPC 252 (377)
T ss_dssp -C-CCGGGC-------------S--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCH
T ss_pred -C-Cchhhc-------------C--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchH
Confidence 1 232211 3 36689999999888 57776644321 001111122345555
Q ss_pred HHHHHHHHHcCCchhhHH--HHHHHHHHHHHHHHHHHHHHHhC-CCeeecC----CccEEEEEecCcccccCChhHHHHH
Q 037587 308 QTQYLLSRMLSDKKFTCN--YMKENRKRLRKRKEMLVSGLKVA-GIRCLKS----NAGLFCWVDMRHLLVSNTFEAEKEL 380 (464)
Q Consensus 308 ~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g~f~~~~l~~~~~~~~~~~~~~l 380 (464)
....++..+++. +.+ -++...++.++..+++.+.|++. |+.+.+. .++..+.+.++..-... +-+..+
T Consensus 253 ~~i~~l~~al~~---l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~--~~~~~~ 327 (377)
T 3e77_A 253 FSIYVMGLVLEW---IKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDD--ALEKRF 327 (377)
T ss_dssp HHHHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCH--HHHHHH
T ss_pred HHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCch--hHHHHH
Confidence 555555555442 122 25667777888889999999987 7764431 23344566666311100 111235
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 381 WKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 381 ~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
...+ .++||.+++|.. ..+.+|+|+.. .++++++.+++.|+++++++
T Consensus 328 l~~l-~~~Gi~~~~g~~----~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 328 LDKA-LELNMLSLKGHR----SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp HHHH-HHTTEESCBCCT----TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHCCcEEeCCCC----cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 5555 467999998863 24569999987 78999999999999998875
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-16 Score=153.37 Aligned_cols=283 Identities=13% Similarity=0.173 Sum_probs=181.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCC-CCcEEE-eCChHHHHHHHHHHhcCCCCeEEEcCC-CCCC-hhhhcccCCCcEEEEE
Q 037587 86 FPDAKKELVKLMARIRGNKVKFD-PNKLVL-TAGSTAANETLMFCLADPGDAFLLPTP-YYPG-FDRDLKWRPGVEIVPI 161 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~-~~~i~i-t~G~~~al~~~~~~l~~~gd~Vlv~~p-~y~~-~~~~~~~~~g~~~~~v 161 (464)
..+.|+.++++++ ++ +.+|++ |+|+|+++++++..++ +||++++... .|.. ....++.. |+++..+
T Consensus 52 ~~~~r~~la~ll~--------~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~-G~~v~~~ 121 (361)
T 3m5u_A 52 HFGAQEKAKKLYE--------LNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQIL-GVNVKTV 121 (361)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHc-CCceEEE
Confidence 3456677777775 44 457887 9999999999999998 8886532222 2321 22234445 8999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
+.+..+.+.++++. + ++ +++++|.+++..|.||..++. +++ +|+++++|.+.+ ++..
T Consensus 122 ~~~~~g~~~~~~~~-~--l~------~~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~---~g~~-- 178 (361)
T 3m5u_A 122 ASSEESNFDHIPRV-E--FS------DNADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDASSD---FFSR-- 178 (361)
T ss_dssp EECTTTTSCSCCCC-C--CC------TTSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECGGG---TTSS--
T ss_pred ecccCcCCCcCChh-h--cC------CCCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEcccc---cCCC--
Confidence 88764433334444 2 43 378889998888999998762 233 499999999987 4433
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH---------------hcccCCCC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK---------------MSSFGLVS 306 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~---------------~~~~~~~s 306 (464)
+ .++. ...+++.|..|.+|.+| +|+++.+++.+.. +.. ...+++++
T Consensus 179 ~-id~~---------------~~d~~~~s~~K~~gp~G--~g~l~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~Tp~ 239 (361)
T 3m5u_A 179 K-VDFS---------------NIALFYGGVQKNAGISG--LSCIFIRKDMLER-SKNKQIPSMLNYLTHAENQSLFNTPP 239 (361)
T ss_dssp C-CCCT---------------TEEEEEEETTTTSSCTT--CEEEEEEHHHHHH-HHTCCCCGGGCHHHHHHTTTCSSCCC
T ss_pred C-CCcc---------------cCCEEEEechhccCCCc--cEEEEEcHHHHhh-hcCCCCCceeehHHHhhcCCCCCCcc
Confidence 1 2211 22367789999999778 6888875443322 211 11224455
Q ss_pred hHHHHHHHHHcCCchhhHHH--HHHHHHHHHHHHHHHHHHHHhCC-C-eeecC---CccEEEEEecCcccccCChhHHHH
Q 037587 307 SQTQYLLSRMLSDKKFTCNY--MKENRKRLRKRKEMLVSGLKVAG-I-RCLKS---NAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 307 ~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~g-~-~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
.....++..+++- +.+. ++...++.++..+++.+.|++++ + ....+ .....+.+.++.. ...+ .+
T Consensus 240 v~~i~~l~~al~~---l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~~~--~~ 311 (361)
T 3m5u_A 240 TFAIYMFNLEMDW---LLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KDLE--PL 311 (361)
T ss_dssp HHHHHHHHHHHHH---HHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC---TTHH--HH
T ss_pred HHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc---hhhh--HH
Confidence 5544444444431 1221 56666777788888999999885 5 44321 1223455666531 1112 23
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
+.. .|+++||.+++|... .+.+|+|+.. .++++++.+++.|+++.++++
T Consensus 312 ~~~-~L~~~gI~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~~~~~~ 361 (361)
T 3m5u_A 312 FVK-EAEEAGMIGLKGHRI----LGGIRASIYNALNLDQVKTLCEFMKEFQGKYA 361 (361)
T ss_dssp HHH-HHHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHCCCEEecCCCc----cCeEEEEccCCCCHHHHHHHHHHHHHHHHhcC
Confidence 554 456789999887542 2459999987 789999999999999988753
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=160.69 Aligned_cols=287 Identities=13% Similarity=0.094 Sum_probs=184.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCC-CcEEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDP-NKLVL-TAGSTAANETLMFCLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~-~~i~i-t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~ 160 (464)
-..+.|+.++++++ ++. .+|++ |+|+|+++++++..++.+||+|++..-++.+. ...++.. | ++..
T Consensus 73 ~~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~-G-~v~~ 142 (386)
T 3qm2_A 73 VAEEAEQDFRDLLN--------IPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKY-C-APQI 142 (386)
T ss_dssp CCHHHHHHHHHHHT--------CCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTT-S-EEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHh-C-CeEE
Confidence 46889999999997 433 46888 69999999999999999999987554443222 2234444 8 8888
Q ss_pred EecC-CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 161 IHCS-SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 161 v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
++.+ ++.++.++++.++..++ +++++|.+++-.|.||.. .|.++ |. +|+++++|.+.+ ++.
T Consensus 143 v~~~~~~~G~~~~~~~~~~~l~------~~t~lV~~~h~et~tG~~i~pi~~---i~-----~g~~~~vDa~qs---~g~ 205 (386)
T 3qm2_A 143 IDAKITVDGKRAVKPMREWQLS------DNAAYLHYCPNETIDGIAIDETPD---FG-----PEVVVTADFSST---ILS 205 (386)
T ss_dssp EECEEEETTEEEECCGGGCCCC------TTCSCEEECSEETTTTEECCCCCC---CC-----TTCCEEEECTTT---TTS
T ss_pred EecCcccCCCCCCchHHHhhcC------CCCcEEEEECCcCCcCEecCchhh---hc-----CCCEEEEEcccc---cCC
Confidence 8876 12333356666665553 378888888888889996 55444 32 699999999987 443
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHH-------------HHHHHhcccCCC
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVV-------------SAATKMSSFGLV 305 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~-------------~~~~~~~~~~~~ 305 (464)
. + .++..+ + +++.|..|.+|.+| +|+++.+++.+. ........+++.
T Consensus 206 ~--p-idv~~~-------------~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp 265 (386)
T 3qm2_A 206 A--P-LDVSRY-------------G--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTP 265 (386)
T ss_dssp S--C-CCGGGC-------------S--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------
T ss_pred C--C-CCcccc-------------C--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCC
Confidence 3 1 232222 3 35689999999778 788877543210 011111122334
Q ss_pred ChHHHHHHHHHcCCchhhHHH--HHHHHHHHHHHHHHHHHHHHhCCCe-ee--c-CCccEEEEEecCcccccCChhHHHH
Q 037587 306 SSQTQYLLSRMLSDKKFTCNY--MKENRKRLRKRKEMLVSGLKVAGIR-CL--K-SNAGLFCWVDMRHLLVSNTFEAEKE 379 (464)
Q Consensus 306 s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~-~~--~-~~~g~f~~~~l~~~~~~~~~~~~~~ 379 (464)
+.....++..+++ ++.+. ++...++.++..+++.+.|++.|+. .. + ..+...+.+.++.. ..+ .+
T Consensus 266 ~v~~i~~l~~Al~---~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~----~~~--~~ 336 (386)
T 3qm2_A 266 PTFAWYLSGLVFK---WLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADN----TLD--KV 336 (386)
T ss_dssp CCSHHHHHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSG----GGH--HH
T ss_pred cHHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCc----ccc--HH
Confidence 4444444444443 22222 6667777888888999999887752 21 1 12233555666631 111 23
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 380 l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+... |+++||.+++|... .+.+|+|+.. .++++++.+++.|+++.+++
T Consensus 337 ~~~~-L~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 337 FLEE-SFAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp HHHH-HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5555 56789999887543 2459999987 78999999999999998764
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=153.13 Aligned_cols=340 Identities=12% Similarity=0.058 Sum_probs=196.6
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCC-CCCCcHHHHHHHHHHHHHHcC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQ-DYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~~ 102 (464)
.|..+.+...+||+..+ .+.+ ..|.+.+++.++.+ ....+. +..-..+|.+.|++.+.
T Consensus 79 ~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~-------------~~~~~~~~~~~~~~lae~l~~~~p---- 141 (454)
T 4ao9_A 79 AALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQ-------------GGINLTGHNLLEGRLARLICERFP---- 141 (454)
T ss_dssp TEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHH-------------TCSCCCSEESSHHHHHHHHHHHST----
T ss_pred CEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHh-------------cCCCccCCcHHHHHHHHHHHHhCC----
Confidence 34555667789998755 3444 34667776665422 111111 11223556565655542
Q ss_pred CCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCC-----CcEEEEEecCCCCCcccCHHH
Q 037587 103 NKVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRP-----GVEIVPIHCSSSNGFRITISA 175 (464)
Q Consensus 103 ~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~-----g~~~~~v~~~~~~~~~~d~~~ 175 (464)
..+.+.++++++|++..+++... ...++|+...-+|.+......... ......+|. -|++.
T Consensus 142 -----~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~ 209 (454)
T 4ao9_A 142 -----QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQT 209 (454)
T ss_dssp -----TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHH
T ss_pred -----CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHH
Confidence 45789999999999999988753 234688888888876543322110 123333332 26888
Q ss_pred HHHHHHHHhhcCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhcc
Q 037587 176 LENAYQQAQTLNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDR 253 (464)
Q Consensus 176 l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~ 253 (464)
+++.+++. ++++.+|++ -| ....|.+ .+++.+++|.++|+++|+++|.||+..+ .. +. . ...+...
T Consensus 210 l~~~l~~~---~~~iAavIv-EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~-G~--~--~a~e~~g-- 277 (454)
T 4ao9_A 210 ARAQIERH---GPEIAVVLV-EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RL-AP--H--GLANKLG-- 277 (454)
T ss_dssp HHHHHHHT---GGGEEEEEE-CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GG-ST--T--CHHHHHT--
T ss_pred HHHHHhhc---CCceEEEEe-ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CC-cc--c--cchhccC--
Confidence 88888752 346666555 45 4556755 4677899999999999999999999974 22 22 1 1111111
Q ss_pred CcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-cc-----cCCCChHHHHHHHHHc---CCchhhH
Q 037587 254 NIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-SS-----FGLVSSQTQYLLSRML---SDKKFTC 324 (464)
Q Consensus 254 ~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~~-----~~~~s~~~q~~~~~~l---~~~~~~~ 324 (464)
..+. +-+++|.+| .|+.+|.++++ +.+.+.+... .. .++.++++.+++.+.| .++++ .
T Consensus 278 -------v~PD---i~t~gK~lg-gG~Piga~~~~-~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~-~ 344 (454)
T 4ao9_A 278 -------IRSD---LTTLGKYIG-GGMSFGAFGGR-ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEA-A 344 (454)
T ss_dssp -------CCCS---EEEEEGGGG-TTSSCEEEEEC-HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHH-H
T ss_pred -------CCCc---EEEeccccC-CCCcceeeeeH-HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccCh-h
Confidence 1122 338999998 89999999984 4454444221 11 1234666666655554 34433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccc-------ccCChhHHHHHHHHHHHhcCeEEeCCCC
Q 037587 325 NYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLL-------VSNTFEAEKELWKKIIFEVGLNISPGSS 397 (464)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~-------~~~~~~~~~~l~~~ll~~~gI~v~pg~~ 397 (464)
+.++++-+.+++ .|.+.+.+.++......-|.++.+.+.... ...+......++..++ ++||++.|.
T Consensus 345 ~~~~~~g~~l~~---~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~Gv~~~p~-- 418 (454)
T 4ao9_A 345 GALAERGEALRA---RLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLL-NEDIYSSPR-- 418 (454)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHH-HTTEECCTT--
T ss_pred HHHHHHHHHHHH---HHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHH-HCCEEEcCC--
Confidence 233333333333 233333444443222223446666653221 0111112234556666 569999764
Q ss_pred CCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhCc
Q 037587 398 CHCNEPGWFRICFANITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 398 f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
+++.++.. .|++++++++++|++++.++..
T Consensus 419 ------~~~~~s~~-~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 419 ------GFVVLSLP-LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp ------CEEECCTT-CCHHHHHHHHHHHHHHHHHSGG
T ss_pred ------CCEEEeCC-CCHHHHHHHHHHHHHHHHhccc
Confidence 23445544 6899999999999999988653
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-14 Score=140.59 Aligned_cols=317 Identities=15% Similarity=0.118 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC----CCeEEEcCCCCCChhhhcccCCCcEEEEEec
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADP----GDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~----gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
.|-+.++--+=+..| ++ .....++++|+|.++..++.+.+++ ||.|+++..+|.....++... |++++.++.
T Consensus 116 ~ltn~l~ld~L~~~G--~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~-Gl~Pv~V~p 191 (501)
T 3hl2_A 116 KITNSLVLDIIKLAG--VH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA-GFEPVVIEN 191 (501)
T ss_dssp HHHHHHHHHHHHHTT--CT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEECE
T ss_pred HHHHHHHHHHHHHcC--CC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc-CCeEEEEee
Confidence 444444443333444 32 2346889999998877777777664 499999999999999888877 999998876
Q ss_pred CC-CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-cCCCC
Q 037587 164 SS-SNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-FDSPS 240 (464)
Q Consensus 164 ~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~~~~~ 240 (464)
.. ++.+.+|++.++++|++. +.+..++++++| .|..|.+ +++++|+++|+++|+++++|+||.... |...
T Consensus 192 ~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~~~~- 264 (501)
T 3hl2_A 192 VLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSKCMH- 264 (501)
T ss_dssp EEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHHHHH-
T ss_pred eecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhhhhh-
Confidence 21 236889999999999874 223344455444 4433444 479999999999999999999997532 1111
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
-+.+..++ ..-.+++.|.+|.+-++ +..|.+...++.+.+.+....+-...++++..+...++.-+
T Consensus 265 -lp~sA~~~------------GrAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lG 330 (501)
T 3hl2_A 265 -LIQQGARV------------GRIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLG 330 (501)
T ss_dssp -HHHHHHHH------------SCCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHH
T ss_pred -hHHHHHhc------------CCCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 01122222 01446788999998444 33345556666555544433322223445554555544432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeecCCcc-EEEEEecCcccccCChhHHHHHHHHHHHhcCeE---E
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKV----AGIRCLKSNAG-LFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLN---I 392 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~~~~~g-~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~---v 392 (464)
.+.+++..++..+...+|.+.|++ +|-++.....| .-+-+.+........ ....++-..|+ .++|. |
T Consensus 331 ---r~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~-~~~t~~gs~Lf-~r~vsG~Rv 405 (501)
T 3hl2_A 331 ---SNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRD-KAVTQLGSMLF-TRQVSGARV 405 (501)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTS-CHHHHHHHHHH-HTTCCSCEE
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccccccc-ccHHHHHHHHH-hcCCCccee
Confidence 223344444455555556666655 36566543322 344455543311111 12223444444 45553 4
Q ss_pred -eCCC----------CCCCCC----CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 393 -SPGS----------SCHCNE----PGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 393 -~pg~----------~f~~~~----~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.+|. .|+... ..|+=++.+. +++++++.++++|.+++.+.+.
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555 455421 2467776655 7999999999999999987763
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=139.53 Aligned_cols=364 Identities=13% Similarity=0.081 Sum_probs=200.4
Q ss_pred CCCCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 27 NPYDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 27 ~~y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
..|..+.+...+||+..+ .+.+. .|.+.+++.++... +.....+.. ..+....+++.+.+...
T Consensus 55 G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----------~~~~~~~~~---~~~~~~~lae~L~~~~p 121 (456)
T 4atq_A 55 GGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAH----------FTHTCFMVT---PYEGYVAVTEQLNRLTP 121 (456)
T ss_dssp TTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHH----------CSCCTTTTS---CCHHHHHHHHHHHHHSS
T ss_pred cCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhh----------ccCcccCcc---CcHHHHHHHHHHHHhCC
Confidence 345555667789999765 44553 46677777664221 111111111 12333445555544321
Q ss_pred CCCCC-CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCC-------------CcEEEEEecCC-
Q 037587 103 NKVKF-DPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRP-------------GVEIVPIHCSS- 165 (464)
Q Consensus 103 ~~~~~-~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~-------------g~~~~~v~~~~- 165 (464)
. ..+.++++++++|++..+++... ....+|+...-+|++....+.... ...+..+|...
T Consensus 122 ----~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~ 197 (456)
T 4atq_A 122 ----GDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYP 197 (456)
T ss_dssp ----CSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCG
T ss_pred ----CCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccc
Confidence 1 24578999999999999987642 234788998889887542211000 11344444321
Q ss_pred ---CCCcccCHHHHHHHHHHHhh--cCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 166 ---SNGFRITISALENAYQQAQT--LNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 166 ---~~~~~~d~~~l~~~i~~~~~--~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
......+.+.+++.++.... .+.++.+|++ -| ..-.|.+ .+.+.++++.++|++||+++|.||+..++.-.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAviv-EPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG 276 (456)
T 4atq_A 198 FREENPEITGAEAAKRAITMIEKQIGGDQVAAIII-EPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG 276 (456)
T ss_dssp GGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEE-CSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred cccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEe-ccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcc
Confidence 00111134445444443322 1235665555 45 4445654 567789999999999999999999998742222
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHH
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRM 316 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~ 316 (464)
. . ... +... ..+. +-+++|.+| .|+.+|.+++. +.+.+.+.... ..+..++++.+++.+.
T Consensus 277 ~--~-~a~-e~~g---------v~PD---ivt~gK~lg-gg~P~~av~~~-~~i~~~~~~~~~~~Tf~gnpla~aaala~ 338 (456)
T 4atq_A 277 E--W-FAV-DHEG---------VVPD---IITMAKGIA-GGLPLSAITGR-ADLLDAVHPGGLGGTYGGNPVACAAALAA 338 (456)
T ss_dssp S--S-SGG-GGTT---------CCCS---EEEECGGGG-TTSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHH
T ss_pred c--c-ccc-cccC---------CCCc---hhhhhhccc-CcCCceeeEec-HHHHhcccccCCCCCCCCChHHHHhhHHH
Confidence 2 1 111 1110 1123 337899998 89999999984 44443332221 2233567777776666
Q ss_pred cC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec--CCccEEEEEecCccccc-CChhHHHHHHHHHHHhcCe
Q 037587 317 LS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK--SNAGLFCWVDMRHLLVS-NTFEAEKELWKKIIFEVGL 390 (464)
Q Consensus 317 l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~--~~~g~f~~~~l~~~~~~-~~~~~~~~l~~~ll~~~gI 390 (464)
|+ +.++ .+..+++-+.+.++.+.+.+.+...+-+++. -.-|+++-+++...... ........++..++ ++||
T Consensus 339 L~~i~~~~l-~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~-~~Gv 416 (456)
T 4atq_A 339 IDTMEQHDL-NGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACL-KEGV 416 (456)
T ss_dssp HHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTE
T ss_pred HHHHhhccH-HHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHH-HCCC
Confidence 54 2222 2233333333333332232222111111110 12356777887543211 12222335666665 6799
Q ss_pred EEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 391 NISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 391 ~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
++.++..+ .+.+||.... ++++++++++++|.++++..
T Consensus 417 l~~~~g~~----~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 417 IILTCGTY----GNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp ECEEECTT----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99875432 4579998876 69999999999999998753
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-13 Score=132.63 Aligned_cols=302 Identities=13% Similarity=0.129 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCC----cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc-----cc--CCCc
Q 037587 88 DAKKELVKLMARIRGNKVKFDPN----KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL-----KW--RPGV 156 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~----~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-----~~--~~g~ 156 (464)
++.....++..+.++ ++.. ||-.-+|+ .|+..++.+|++|||+|+..+...+++...- .. ..|.
T Consensus 100 ~iE~la~~rak~lF~----a~~A~w~VNVQP~SGs-~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~ 174 (490)
T 3ou5_A 100 EIELLCQRRALEAFD----LDPAQWGVNVQPYSGS-PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSI 174 (490)
T ss_dssp HHHHHHHHHHHHHTT----CCTTTEEEECCCSSHH-HHHHHHHHHHCC-CCCEECBC-----------------------
T ss_pred HHHHHHHHHHHHHhC----CCccccCCCCCcCCHH-HHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccc
Confidence 344444445555665 5655 56665555 6777888999999999999998887764321 00 0122
Q ss_pred --EEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccccc
Q 037587 157 --EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGT 234 (464)
Q Consensus 157 --~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~ 234 (464)
+.++++++++ ...+|.+++++...+. +|++|+..-...| ..++ .+++.++|.+.|.++++|-++...
T Consensus 175 ~~~~~~Y~vd~~-t~~IDyd~~~~~A~~~-----kPklIi~G~SaY~--r~id---~~~~reIAd~vGA~Lm~DmAHiaG 243 (490)
T 3ou5_A 175 FFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYA--RLID---YARMREVCDEVKAHLLADMAHISG 243 (490)
T ss_dssp -----CBCEETT-TTEECHHHHHHHHHHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECGGGHH
T ss_pred cccccccccCCC-CCcccHHHHHHHHhhc-----CCCeEEECCccCc--cccC---HHHHHHHHhhcccEEEechhhhhh
Confidence 4555556543 4569999999998875 8997776544344 2344 455555666789999999999654
Q ss_pred ccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCH--------------HHHHHHHHhc
Q 037587 235 VFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE--------------RVVSAATKMS 300 (464)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~--------------~~~~~~~~~~ 300 (464)
...+. .+++.... ..++..|.+|+| .|-|-|.|.++++ .+.+.+....
T Consensus 244 LVA~g--~~psP~~~--------------ADvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aV 305 (490)
T 3ou5_A 244 LVAAK--VIPSPFKH--------------ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAV 305 (490)
T ss_dssp HHHTT--SSCCGGGT--------------CSEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHH
T ss_pred hhccc--ccCCcccc--------------ceEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHHHHHhhc
Confidence 44433 23343333 236688999998 7889999988542 2344444432
Q ss_pred ccC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCccEEEEEecCcc-cccCChhHH
Q 037587 301 SFG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-SNAGLFCWVDMRHL-LVSNTFEAE 377 (464)
Q Consensus 301 ~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~f~~~~l~~~-~~~~~~~~~ 377 (464)
-++ ..++..-.+++.+..-.+.+....+...+++.++.+.|.+.|.+.|+++.. ...+..+++++... ...
T Consensus 306 FPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~tG------ 379 (490)
T 3ou5_A 306 FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDG------ 379 (490)
T ss_dssp TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCH------
T ss_pred CccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCCCH------
Confidence 222 222222211111111111112223445556667888899999999998874 33456778888643 121
Q ss_pred HHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHHh
Q 037587 378 KELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFAN-----ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~ 431 (464)
..++.+|++.||.+. |+.. .+..++.+||+... ..+++++++.+-|.+++..
T Consensus 380 -~~ae~~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~~ 440 (490)
T 3ou5_A 380 -ARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp -HHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 245677788999985 5542 22235679999843 3678999999998887753
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-12 Score=129.37 Aligned_cols=348 Identities=14% Similarity=0.184 Sum_probs=192.5
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCC-cHHHHHHHHHHHHHHcCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHG-FPDAKKELVKLMARIRGN 103 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g-~~~lr~~ia~~~~~~~~~ 103 (464)
|..+.+...+||+..+ .+.+ ..|.+.+++.++. ..+..|....+ ..+....+|+.+.+...
T Consensus 60 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~-------------~~l~~~~~~~~~~~~~~~~lAe~L~~~~p- 125 (473)
T 4e3q_A 60 YIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQY-------------ERFPGYHAFFGRMSDQTVMLSEKLVEVSP- 125 (473)
T ss_dssp EEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHH-------------HHCCCCCCCTTEEEHHHHHHHHHHHHHSS-
T ss_pred EEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHH-------------HhcccccccccccCHHHHHHHHHHHhhCC-
Confidence 5555566788998764 3434 3466766666542 22222322212 24455566666655422
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCCCChhhhcccCCC-----------cEEEEEecC
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA-------DPG-DAFLLPTPYYPGFDRDLKWRPG-----------VEIVPIHCS 164 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~~g-----------~~~~~v~~~ 164 (464)
.+.+.|+++++++||++.+++... .++ .+|+...-+|++....+....| .....++..
T Consensus 126 ---~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p 202 (473)
T 4e3q_A 126 ---FDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCP 202 (473)
T ss_dssp ---CSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCC
T ss_pred ---CCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCC
Confidence 345689999999999999998642 123 5788888888774322110001 112222221
Q ss_pred CC---CCcccC--------HHHHHHHHHHHhhcCC-ceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEecc
Q 037587 165 SS---NGFRIT--------ISALENAYQQAQTLNL-KVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEI 230 (464)
Q Consensus 165 ~~---~~~~~d--------~~~l~~~i~~~~~~~~-~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Dea 230 (464)
.. +...-. .+++++.+.+ .++ ++.+ ++.-| ..-.|.+ .+++-+++|.++|+++|+++|.||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~~~~iAa-vi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV 278 (473)
T 4e3q_A 203 HYWRYGEEGETEEQFVARLARELEETIQR---EGADTIAG-FFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEV 278 (473)
T ss_dssp CHHHHSCTTCCHHHHHHHHHHHHHHHHHH---HCGGGEEE-EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECT
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHh---hCCCceEE-EEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCc
Confidence 00 000001 2334444433 232 4554 45456 4556765 4567899999999999999999999
Q ss_pred ccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHH----hcc----
Q 037587 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATK----MSS---- 301 (464)
Q Consensus 231 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~----~~~---- 301 (464)
..+ |+..+ .+... +... ..+.+ -+++|.++ .| +.+|.++++ +.+.+.+.. ...
T Consensus 279 ~tG--fGRtG-~~fa~-e~~g---------v~PDi---~t~~K~l~-gG~~Pl~av~~~-~~i~~~~~~~~~~~~~~~hg 340 (473)
T 4e3q_A 279 ICG--FGRTG-NTWGC-VTYD---------FTPDA---IISSKNLT-AGFFPMGAVILG-PELSKRLETAIEAIEEFPHG 340 (473)
T ss_dssp TTS--SSTTS-SSCHH-HHTT---------CCCSE---EEECGGGG-TTSSCCEEEEEC-HHHHHHHHHHHHHHSCCCCC
T ss_pred ccc--CCccc-chhHH-HhcC---------CCCCh---HHhccccc-CCCCCccccccc-HHHHHHhccccccccccccC
Confidence 997 43221 11111 1111 11233 37899998 66 999999994 445444332 111
Q ss_pred -cCCCChHHHHHHHHHcCC---chhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCccEEEEEecCcccccC-
Q 037587 302 -FGLVSSQTQYLLSRMLSD---KKFTCNYMKENRKRLRKRKEMLVSGLKVA----GIRCLKSNAGLFCWVDMRHLLVSN- 372 (464)
Q Consensus 302 -~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~f~~~~l~~~~~~~- 372 (464)
.++.++++.+++.+.|+- .++ .+..+ +.-++|.+.|+++ .+.-... -|+++-+++.......
T Consensus 341 ~T~~Gnpla~Aaala~L~~i~~~~l-~~~~~-------~~g~~l~~~L~~l~~~~~v~~vRG-~Gl~~gielv~~~~~~~ 411 (473)
T 4e3q_A 341 FTASGHPVGCAIALKAIDVVMNEGL-AENVR-------RLAPRFEERLKHIAERPNIGEYRG-IGFMWALEAVKDKASKT 411 (473)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHHSSH-HHHHH-------HHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTB
T ss_pred CCCCCCcchhhhhhhhhhhhccccH-HHHHH-------HHHHHHHHHHHHHhcCCCeeEEee-cceEEEEEEecCccccc
Confidence 123566766666665542 222 22222 2333344444332 2221222 3567767764321111
Q ss_pred ----ChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 373 ----TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 373 ----~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.......+...++ ++||+++|.. +.+|++... ++++++++++++|.+++++.
T Consensus 412 ~~~~~~~~~~~~~~~~~-~~Gll~~~~g-------~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 412 PFDGNLSVSERIANTCT-DLGLICRPLG-------QSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp CCCGGGCHHHHHHHHHH-HTTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHH-HCCcEEEecC-------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1111234555554 6799998742 468988765 79999999999999988764
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-14 Score=151.06 Aligned_cols=218 Identities=14% Similarity=0.120 Sum_probs=128.3
Q ss_pred CceEEEEEeCC-CCCCCCCC-CHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcE
Q 037587 188 LKVKGVLITNP-SNPLGTAM-THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRI 265 (464)
Q Consensus 188 ~~~~~vil~~P-~NPtG~~~-s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 265 (464)
.++.+|++-.- .+..|... |.+.+++|.++|++||+++|+||++.++...+. .+ . .+... ..+.+
T Consensus 593 ~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~--~f-a-~e~~g---------v~PDi 659 (831)
T 4a0g_A 593 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV--ET-T-TELLG---------CKPDI 659 (831)
T ss_dssp CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB--SS-T-HHHHS---------SCCSE
T ss_pred CcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC--ch-h-hHhcC---------CCCcE
Confidence 35665555432 67778754 788899999999999999999999987533333 22 1 11111 11233
Q ss_pred EEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHh--------cccCCCChHHHHHHHHHcC---CchhhHHHHHHHHHH
Q 037587 266 HIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKM--------SSFGLVSSQTQYLLSRMLS---DKKFTCNYMKENRKR 333 (464)
Q Consensus 266 i~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~ 333 (464)
.+|||.+| .| +++|+++++ +.+.+.+... ...+..++++++++.+.|+ +.++ .+.+.++.+.
T Consensus 660 ---itlsK~L~-gG~~Plgav~~~-~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l-~~~~~~~~~~ 733 (831)
T 4a0g_A 660 ---ACFAKLLT-GGMVPLAVTLAT-DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET-NHNITSQGKT 733 (831)
T ss_dssp ---EEECGGGG-TTSSCCEEEEEC-HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT-CTTBCTTSSB
T ss_pred ---EEEecccc-cCccCcEEEEEC-HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHH-HHHHHHHHHH
Confidence 38999998 68 899999994 4555544321 1112356777777666554 2222 1111111111
Q ss_pred HHH-HHHHHHHHHHhCC-CeeecCCccEEEEEecCcccccC--ChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 037587 334 LRK-RKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSN--TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC 409 (464)
Q Consensus 334 ~~~-~~~~l~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~~~--~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris 409 (464)
+++ ..+.+.+.+.++. +....+. |+++.+++....... ......++...++ ++||+++|+ .+.+|++
T Consensus 734 l~~~l~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gv~v~p~-------g~~lrl~ 804 (831)
T 4a0g_A 734 LRELWDEELVQQISSHSAVQRVVVI-GTLFALELKADASNSGYASLYAKSLLIMLR-EDGIFTRPL-------GNVIYLM 804 (831)
T ss_dssp BCCCSCHHHHHHHHHSTTEEEEEEE-TTEEEEEEC---------CHHHHHHHHHHH-HTTEECCCB-------TTEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCceeEeec-ccEEEEEEecCccccccchHHHHHHHHHHH-HCCcEEEec-------CCEEEEE
Confidence 111 0122344455543 3333333 467778775321110 1122335666665 679999975 2579999
Q ss_pred eec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 410 FAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 410 ~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
... ++++++++++++|.+++++.+
T Consensus 805 pp~~~t~e~id~~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 805 CGPCTSPEICRRLLTKLYKRLGEFN 829 (831)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 655 799999999999999987664
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-12 Score=124.17 Aligned_cols=315 Identities=16% Similarity=0.123 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCC----CCeEEEcCCCCCChhhhcccCCCcEEEEEec
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADP----GDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~----gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
.+.+.+..++-+..| ++ +....++++|+|.+...++.+.+++ ++.|+++..+|..+..++... |+.++.++.
T Consensus 98 ~~e~~~~~~~~~~lG--lp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~-Gl~p~~v~~ 173 (450)
T 3bc8_A 98 KITNSLVLNVIKLAG--VH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA-GFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHT--CT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHHHhCC--CC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc-CCeeEEEEe
Confidence 455566666665555 21 2334688999985555555555444 899999999999999988877 999888875
Q ss_pred CC-CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 164 SS-SNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 164 ~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
.. ++.+.+|++.|+++|++.. .+.+++++.+| .+.+|.+ +++++|+++|+++|+++++|+||+.. +...
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~---~~~~~~Vv~t~t~~g~g~~---ddl~~Ia~ia~~~gi~l~VD~A~G~~-~~~~-- 244 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELG---PEHILCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQ-SSKC-- 244 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHC---GGGEEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTT-CHHH--
T ss_pred eecCccCCcCHHHHHHHHHhcC---CCCEEEEEEECCcCCCcee---cCHHHHHHHHHHCCCeEEEECCCchh-hhhh--
Confidence 32 2367899999999998742 12456677777 3455666 57899999999999999999999852 2111
Q ss_pred Cccchh-hhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 242 SFISIM-EAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 242 ~~~~~~-~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
..+. +... ...-..++.|.+|++. .....+++..+++...+...........++++......++..+
T Consensus 245 --~~l~~~a~~---------~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G 312 (450)
T 3bc8_A 245 --MHLIQQGAR---------VGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG 312 (450)
T ss_dssp --HHHHHHHHH---------HSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH
T ss_pred --HhHHHHHhc---------ccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Confidence 1111 1111 0023356789999986 4445677776565554444333211123455555544444322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----hCCCeeecCCcc-EEEEEecCcccccCChhHHHHHHHHHHHhcC---eEE
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLK----VAGIRCLKSNAG-LFCWVDMRHLLVSNTFEAEKELWKKIIFEVG---LNI 392 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~----~~g~~~~~~~~g-~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~g---I~v 392 (464)
.+.+++..+...+..+++.+.++ ++|..+...+.+ .-..+.+........ .+..++...+. ..| .-+
T Consensus 313 ---~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~D~tkl~i~~~-~~g~sG~~v 387 (450)
T 3bc8_A 313 ---CSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHD-KAVTQLGSMLF-TRQVSGARA 387 (450)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSS-CHHHHHHHHHH-HTTCCSCEE
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccccccc-CCCceeEEEec-CCCCcccee
Confidence 22233333333333344444443 336666543211 011223332211111 12233444432 334 333
Q ss_pred eC---------------CCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 393 SP---------------GSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 393 ~p---------------g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.+ |.........++=+.++. .+++++++++++|+++.++.
T Consensus 388 ~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~ 443 (450)
T 3bc8_A 388 VPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 443 (450)
T ss_dssp ECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 21 111111123456555554 68999999999999987655
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.19 E-value=5.3 Score=36.48 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=62.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
.-++||.|++..=..+...|.+.|..|++.+-.-......++.. |.+...+..|- -|.+++++.+++..+.-.+
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G~ 103 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-GGGAVGIQADS-----ANLAELDRLYEKVKAEAGR 103 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTCEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCCeEEEEecC-----CCHHHHHHHHHHHHHHcCC
Confidence 34666666665556666778889988887654322233334444 66666776653 2567777777666555457
Q ss_pred eEEEEEeCC-CCCCCC--CCCHHHHHHHHHH
Q 037587 190 VKGVLITNP-SNPLGT--AMTHQELNHLINF 217 (464)
Q Consensus 190 ~~~vil~~P-~NPtG~--~~s~~~l~~i~~~ 217 (464)
++. +++|. .++.+. -++.++++++++.
T Consensus 104 iDi-LVNNAG~~~~~~~~~~~~e~w~~~~~v 133 (273)
T 4fgs_A 104 IDV-LFVNAGGGSMLPLGEVTEEQYDDTFDR 133 (273)
T ss_dssp EEE-EEECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred CCE-EEECCCCCCCCChhhccHHHHHHHHHH
Confidence 774 55555 233332 3578888888875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 464 | ||||
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-113 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-102 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 8e-55 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 4e-53 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-49 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 2e-35 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 3e-34 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 1e-28 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 3e-28 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 2e-26 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 2e-24 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-24 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 6e-24 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 7e-24 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 2e-22 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 5e-22 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 1e-21 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-18 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 9e-18 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 2e-15 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 5e-15 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 2e-13 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 3e-11 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 9e-10 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 4e-07 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 7e-04 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 7e-04 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 0.004 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 339 bits (869), Expect = e-113
Identities = 308/428 (71%), Positives = 360/428 (84%), Gaps = 2/428 (0%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
MLSR A+ +SHGQDSSYFLGW+ YE NPY ++HN +GIIQMGLAENQL FDLLESWLA N
Sbjct: 1 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKN 60
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
EA K+NGES+F ELALFQDYHG P KK +V MA IRGNKV FDPN LVLTAG+T+
Sbjct: 61 PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATS 120
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANET +FCLADPG+A L+PTPYYPGFDRDLKWR GVEIVPIHC+SSNGF+IT +ALE AY
Sbjct: 121 ANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAY 180
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
Q+A+ NL+VKGVL+TNPSNPLGT MT EL L++F + K IH++SDEIYSGT F SP
Sbjct: 181 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP- 239
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
SFIS+ME + DRN DE+ ++W R+H+VYSLSKD +PGFRVG IYSN++ VV+AATKMS
Sbjct: 240 -SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 298
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVSSQTQ+LLS MLSDKK T NY+ EN KRL++R++ LVSGL+ +GI CL NAGLF
Sbjct: 299 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 358
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CWVDMRHLL SNTFEAE ELWKKI++EV LNISPGSSCHC EPGWFR+CFAN+ E TL +
Sbjct: 359 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 418
Query: 421 ALQRIKVF 428
A+QR+K F
Sbjct: 419 AMQRLKAF 426
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 311 bits (796), Expect = e-102
Identities = 226/428 (52%), Positives = 315/428 (73%), Gaps = 5/428 (1%)
Query: 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASN 60
+LS++A+ + HG++S YF GW+AY+++P+ L NP+G+IQMGLAENQL DL+E W+ N
Sbjct: 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRN 60
Query: 61 QEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA 120
+ + G F+ +A FQDYHG P+ +K + K M + RG +V+FDP ++V+ G+T
Sbjct: 61 PKG-SICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATG 119
Query: 121 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAY 180
ANET++FCLADPGDAFL+P+PYYP F+RDL+WR GV+++PIHC SSN F+IT A++ AY
Sbjct: 120 ANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179
Query: 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240
+ AQ N+KVKG+++TNPSNPLGT + L +++F+ IH+V DEIY+ TVFD+P
Sbjct: 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239
Query: 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS 300
I+ + + D +HIVYSLSKD +PGFRVG+IYS N+ VV+ A KMS
Sbjct: 240 FVSIAEILDEQEMTYCNKD----LVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS 295
Query: 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF 360
SFGLVS+QTQY L+ MLSD+KF N+++E+ RL KR + +GL+V GI+CLK+NAGLF
Sbjct: 296 SFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLF 355
Query: 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420
CW+D+R LL +TF++E LW+ II +V LN+SPGSS C EPGWFR+CFAN+ + T+ +
Sbjct: 356 CWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDI 415
Query: 421 ALQRIKVF 428
AL RI+ F
Sbjct: 416 ALARIRRF 423
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 185 bits (471), Expect = 8e-55
Identities = 66/393 (16%), Positives = 157/393 (39%), Gaps = 43/393 (10%)
Query: 38 IIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLM 97
+ E F+ + + + + A+E + + G P ++ + + +
Sbjct: 32 VCSFSAGEP--DFNTPKHIVEAAKAALEQGKTR---------YGPAAGEPRLREAIAQKL 80
Query: 98 ARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVE 157
R + + + +++T G + LM + +PGD ++P P++ + +K G
Sbjct: 81 QRDN--GLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEG-T 137
Query: 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINF 217
V + + F+++ + A K K ++ PSNP G T E+ +
Sbjct: 138 PVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQV 191
Query: 218 SKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM 277
+ + ++SDEIY ++D +SI A S + + R + +K ++M
Sbjct: 192 AVEAGLWVLSDEIYEKILYDDA--QHLSIGAA--------SPEAYERSVVCSGFAKTYAM 241
Query: 278 PGFRVGMIYSNNERV-VSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRK 336
G+RVG + V + + S V + QY + + + ++E +
Sbjct: 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ---DCVQEMLAAFAE 298
Query: 337 RKEMLVSGLK-VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPG 395
R+ ++ L + G+ C K + + + ++ T + + +++ + + PG
Sbjct: 299 RRRYMLDALNAMPGLECPKPDGAFYMFPS-----IAKTGRSSLDFCSELLDQHQVATVPG 353
Query: 396 SSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
++ R+ +A +T++ ++R++ F
Sbjct: 354 AAFGA--DDCIRLSYAT-DLDTIKRGMERLEKF 383
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 180 bits (458), Expect = 4e-53
Identities = 75/390 (19%), Positives = 158/390 (40%), Gaps = 44/390 (11%)
Query: 38 IIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLM 97
++ + E FD E + + A+ + + G P+ ++ L +
Sbjct: 33 LVALTAGEP--DFDTPEHVKEAARRALAQGKTK---------YAPPAGIPELREALAEKF 81
Query: 98 ARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVE 157
R + P + ++T G + A L + DPGD ++ +PY+ + +++ G
Sbjct: 82 RREN--GLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGG-V 138
Query: 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINF 217
+V + GF + A + K +++ +P+NP G + L L
Sbjct: 139 VVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARL 192
Query: 218 SKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM 277
+ ++VSDEIY +++ S + V +K F+M
Sbjct: 193 AVEHDFYLVSDEIYEHLLYEGEHFSPGRVA--------------PEHTLTVNGAAKAFAM 238
Query: 278 PGFRVGMIYSNNERVVSAAT-KMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRK 336
G+R+G E + + A+ S + Q+ L++++ + +++ R+ R+
Sbjct: 239 TGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRR 298
Query: 337 RKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS 396
R+++L+ GL G++ ++ + + +D + AE+ L E G+ + PG+
Sbjct: 299 RRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLL------EAGVAVVPGT 352
Query: 397 SCHCNEPGWFRICFANITEETLQVALQRIK 426
G R+ +A +EE L+ AL+R
Sbjct: 353 DFAA--FGHVRLSYAT-SEENLRKALERFA 379
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 171 bits (433), Expect = 3e-49
Identities = 66/390 (16%), Positives = 155/390 (39%), Gaps = 36/390 (9%)
Query: 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKL 96
+I +G+ E FD + +EA++ + G + ++ + +
Sbjct: 26 DVISLGIGEP--DFDTPQHIKEYAKEALDKGLTH---------YGPNIGLLELREAIAEK 74
Query: 97 MARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGV 156
+ + + ++++ G+ A + G+ L+PTP + + + G
Sbjct: 75 LKK-QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GG 132
Query: 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLIN 216
+ V + + FR+ + L+ K + ++I +P NP G +T ++L + +
Sbjct: 133 KPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIAD 186
Query: 217 FSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS 276
F + ++SDE+Y ++D I+ ++ + +R I V SK F+
Sbjct: 187 FVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTI-----------TVNGFSKTFA 235
Query: 277 MPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRK 336
M G+R+G + + + + + + + ++E RK +
Sbjct: 236 MTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDR 295
Query: 337 RKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS 396
R++++ L G+ +K + + + +T K+ + ++ E + + PGS
Sbjct: 296 RRKLVWKRLNEMGLPTVKPKGAFYIFPR-----IRDTGLTSKKFSELMLKEARVAVVPGS 350
Query: 397 SCHCNEPGWFRICFANITEETLQVALQRIK 426
+ G+ RI +A E L+ A+ R++
Sbjct: 351 AFGKAGEGYVRISYAT-AYEKLEEAMDRME 379
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 133 bits (335), Expect = 2e-35
Identities = 82/399 (20%), Positives = 156/399 (39%), Gaps = 47/399 (11%)
Query: 38 IIQMGLAE-NQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKL 96
+I++ + + + F E + +A++ N + D G P+ +K +V+
Sbjct: 32 VIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNY---------YGDSEGLPELRKAIVER 82
Query: 97 MARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGV 156
R N V P+ + +TA T A + + L DPGD L+P P YP + L G
Sbjct: 83 EKRK--NGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPY-TGLVKFYGG 139
Query: 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLIN 216
+ V ++ I + + + K + + NP+NP G + L ++N
Sbjct: 140 KPVEYRTIEEEDWQPDID------DIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILN 193
Query: 217 FSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS 276
+ I ++SDEIY +M + S + ++ LSK +
Sbjct: 194 IAGEYEIPVISDEIYD-------------LMTYEGEHISPGSLTKDVPVIVMNGLSKVYF 240
Query: 277 MPGFRVGMIYSNN-----ERVVSAATKMSSFGL-VSSQTQYLLSRMLSDKKFTCNYMKEN 330
G+R+G +Y + V A +++ L ++ Q+ L+ +Y+KE
Sbjct: 241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPM---DYLKEY 297
Query: 331 RKRLRKRKEMLVSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVG 389
K+L++R++ + L I K + + + ++ +KE ++
Sbjct: 298 MKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEV----GPWKNDKEFVLDVLHNAH 353
Query: 390 LNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428
+ GS G FR F E L+ A+ R + F
Sbjct: 354 VLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKF 391
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 130 bits (328), Expect = 3e-34
Identities = 54/383 (14%), Positives = 109/383 (28%), Gaps = 77/383 (20%)
Query: 74 FRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLAD-- 131
F ++ F + +K + +L + GN +V G T L+ L+
Sbjct: 94 FNPVSNFIS----FELEKTIKELHEVV-GNAA-AKDRYIVFGVGVTQLIHGLVISLSPNM 147
Query: 132 ------PGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185
P + P+YP F E + + N
Sbjct: 148 TATPDAPESKVVAHAPFYPVF---------REQTKYFDKKGYVWAGNAANYVNV------ 192
Query: 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245
N + ++T+P+NP G L H + IY + +
Sbjct: 193 SNPEQYIEMVTSPNNPEGL------LRH--------AVIKGCKSIYDMVYYWP---HYTP 235
Query: 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG-- 303
I +++++SK G R G +E V + +
Sbjct: 236 IKYK------------ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTE 283
Query: 304 LVSSQTQYLLSRMLSDKKFTC--------NYMKENRKRLRKRKEMLVSGLKVAGIRCL-K 354
+TQ ++L + + K+LR+R + + L + +
Sbjct: 284 GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQE 343
Query: 355 SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIF------EVGLNISPGSSCHCNEPGWFRI 408
+C R S ++ K W++ +N G + R+
Sbjct: 344 LPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRL 402
Query: 409 CFANITEETLQVALQRIKVFAQS 431
T++ + +K ++
Sbjct: 403 SLIK-TQDDFDQLMYYLKDMVKA 424
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 114 bits (286), Expect = 1e-28
Identities = 49/364 (13%), Positives = 102/364 (28%), Gaps = 55/364 (15%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-------ADPGDAFL 137
G + + +L ++ V + G T A L +
Sbjct: 75 GLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVY 134
Query: 138 LPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITN 197
+ +P + + +I + + + + + A VL
Sbjct: 135 VSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE---FSIFVLHAC 191
Query: 198 PSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDE 257
NP GT T ++ + + K + + D Y G + +I
Sbjct: 192 AHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF-------- 243
Query: 258 SDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQT-------- 309
+ S SK+F + RVG + + S +S + T
Sbjct: 244 -VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQG 302
Query: 310 QYLLSRMLSDKKFTCNYM---KENRKRLRKRKEMLVSGLKVAGIRC----LKSNAGLFCW 362
+++R LSD + + K R+ + L + L+ + G+F +
Sbjct: 303 ARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSF 362
Query: 363 VDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVAL 422
+ + + +I + + + P RI +T + L
Sbjct: 363 TGLN-----------PKQVEYLINQKHIYLLPSG----------RINMCGLTTKNLDYVA 401
Query: 423 QRIK 426
I
Sbjct: 402 TSIH 405
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 113 bits (282), Expect = 3e-28
Identities = 76/394 (19%), Positives = 151/394 (38%), Gaps = 48/394 (12%)
Query: 38 IIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLM 97
+I + E F E + ++ + D G + ++ +
Sbjct: 30 VINLTAGEP--DFPTPEPVVEEAVRFLQKGEVK---------YTDPRGIYELREGIA--K 76
Query: 98 ARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVE 157
K P+++V+T G+ A L DPGD ++ +P +
Sbjct: 77 RIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWV-------SYIPQI 129
Query: 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINF 217
I+ + ++ + + + L K K VLI +P+NP G + L L+
Sbjct: 130 ILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRL 189
Query: 218 SKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM 277
+K + +I+SDE+Y S++ +I + + + RI + SK SM
Sbjct: 190 AKKRNFYIISDEVY------------DSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSM 237
Query: 278 PGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKR 337
G+RVG + S+ + + + S + + K + ++R
Sbjct: 238 TGWRVGYLISSEKVATAVSKIQSHTT-----SCINTVAQYAALKALEVDNSYMVQTFKER 292
Query: 338 KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397
K +V LK G++ ++ + + +R + + ++++ E + + PGS+
Sbjct: 293 KNFVVERLKKMGVKFVEPEGAFYLFFKVRG--------DDVKFCERLLEEKKVALVPGSA 344
Query: 398 CHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431
+PG+ R+ FA + E L AL RI+ F S
Sbjct: 345 FL--KPGFVRLSFAT-SIERLTEALDRIEDFLNS 375
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 108 bits (269), Expect = 2e-26
Identities = 54/359 (15%), Positives = 109/359 (30%), Gaps = 52/359 (14%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAF--LLPTPY 142
G P+ + +L+ + + T G T A LA + P
Sbjct: 70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPS 129
Query: 143 YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL 202
+P G+E+ + + AL N+ +AQ + NP
Sbjct: 130 WPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLNEAQA---GDVVLFHGCCHNPT 185
Query: 203 GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262
G T ++ L S K + D Y G + A +
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFA----------AMH 235
Query: 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGL--------VSSQTQYLLS 314
+ + S SK+F + RVG + S + +++
Sbjct: 236 KELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVA 295
Query: 315 RMLSDKKFTCNY---MKENRKRLRKRKEMLVSGLKVAGI----RCLKSNAGLFCWVDMRH 367
+LS+ + + + R+R+++ +++ V+ L+ G + G+F + +
Sbjct: 296 TILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT- 354
Query: 368 LLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
KE ++ E G+ R+ A +T + + + I
Sbjct: 355 ----------KEQVLRLREEFGVYAVASG----------RVNVAGMTPDNMAPLCEAIV 393
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 102 bits (255), Expect = 2e-24
Identities = 45/360 (12%), Positives = 94/360 (26%), Gaps = 52/360 (14%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL---ADPGDAFLLPTP 141
G D + +L K V T + L LP P
Sbjct: 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKP 131
Query: 142 YYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201
+ + G+++ + + + K +L NP
Sbjct: 132 SWGNH-TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPE---KSIILLHACAHNP 187
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261
G ++ L + K + + D Y G + ++ +
Sbjct: 188 TGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHF---------IEQ 238
Query: 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNE--------RVVSAATKMSSFGLVSSQTQYLL 313
+ + S +K+ + G R G + +
Sbjct: 239 GIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIA 298
Query: 314 SRMLSDKKFTCNYM---KENRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMR 366
S +L+ + ++ K R+ + LVS LK G + + G+FC+ +
Sbjct: 299 SLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL- 357
Query: 367 HLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
+ E +++ E + ++ RI A + + I
Sbjct: 358 ----------KPEQVERLTKEFSIYMTKDG----------RISVAGVASSNVGYLAHAIH 397
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 101 bits (253), Expect = 3e-24
Identities = 50/359 (13%), Positives = 107/359 (29%), Gaps = 52/359 (14%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPY 142
G + + L+ +K + T G + A + L P + P
Sbjct: 71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPT 130
Query: 143 YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL 202
+ G E+ + + L + + +L NP
Sbjct: 131 WENHVAIFAGA-GFEVSTYPWYDEATNGVRFNDLLATLKTLPA---RSIVLLHPCCHNPT 186
Query: 203 GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262
G +T+ + + +I K++ + D Y G ++ I
Sbjct: 187 GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYA----------IRAIASAG 236
Query: 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--------SFGLVSSQTQYLLS 314
+ S SK FS+ G RVG + E +A + ++ + +++
Sbjct: 237 LPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVA 296
Query: 315 RMLSDKKFTCNYMKENR---KRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRH 367
+L+D+ +++ E R+ ++ LV L L + G+F + +
Sbjct: 297 AVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL-- 354
Query: 368 LLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
++ E G+ + R+C A + +Q +
Sbjct: 355 ---------SAAQVDRLREEFGVYLIASG----------RMCVAGLNTANVQRVAKAFA 394
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (251), Expect = 6e-24
Identities = 67/368 (18%), Positives = 130/368 (35%), Gaps = 35/368 (9%)
Query: 82 DYHGFPDAKKELVKLMARIRGNKVKFDPNKLV-LTAGSTAANETLMFCLADPGDAFLLPT 140
G+P K L + G + DP + V +T G A T L D GD ++
Sbjct: 62 KTFGYPPLTKILASFFGELLG--QEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIE 119
Query: 141 PYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALE---NAYQQAQTLNLKVKGVLITN 197
P++ ++ G + S+ + + A + K +++
Sbjct: 120 PFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNT 179
Query: 198 PSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDE 257
P+NPLG + +EL + + + + ++DE+Y V+D ISI
Sbjct: 180 PNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISIASL-------- 229
Query: 258 SDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNN-----ERVVSAATKMSSFGLVSSQTQYL 312
+W R + S K FS G++VG + + R V + +
Sbjct: 230 -PGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAES 288
Query: 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN 372
R + +Y + + +++ ++ ++ L+ G++ L F D+
Sbjct: 289 FEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKM 348
Query: 373 T-------FEAEKELWKKIIFEVGLNISPGSSCHCNE-----PGWFRICFANITEETLQV 420
++ K +I GL P S + + R CF E TLQ
Sbjct: 349 PDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQA 407
Query: 421 ALQRIKVF 428
++++ +
Sbjct: 408 MDEKLRKW 415
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 101 bits (251), Expect = 7e-24
Identities = 51/363 (14%), Positives = 109/363 (30%), Gaps = 52/363 (14%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETL--MFCLADPGDAFLLPTPY 142
G P K++ + + ++ D V + T A F P L P
Sbjct: 74 GLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPT 133
Query: 143 YPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL 202
+ + + G++ ++ + ++ NA Q+A VL + NP
Sbjct: 134 WANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQKAPE---GSIFVLHSCAHNPT 189
Query: 203 GTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262
G T ++ +++ SK + D Y G ++ V
Sbjct: 190 GLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK------LSTV 243
Query: 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM------------SSFGLVSSQTQ 310
S + + S +K+ M G RVG + + T S +
Sbjct: 244 SPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGA 303
Query: 311 YLLSRMLSD---KKFTCNYMKENRKRLRKRKEMLVSGLKVAGI----RCLKSNAGLFCWV 363
+++++L + M R+ K + L L G + + G+F +
Sbjct: 304 KIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFT 363
Query: 364 DMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQ 423
+ ++ K++ + + R A + + ++ +
Sbjct: 364 GLT-----------PQMVKRLEETHAVYLVASG----------RASIAGLNQGNVEYVAK 402
Query: 424 RIK 426
I
Sbjct: 403 AID 405
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 97.2 bits (240), Expect = 2e-22
Identities = 73/367 (19%), Positives = 130/367 (35%), Gaps = 30/367 (8%)
Query: 82 DYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTP 141
G P + L KL +++ + +++T G+ A + D GD ++ P
Sbjct: 64 RGFGHPRLVQALSKLYSQLVDRTINPMTE-VLVTVGAYEALYATIQGHVDEGDEVIIIEP 122
Query: 142 YYPGFDRDLKWRPGVEI-VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSN 200
++ ++ +K G+ +P+ + + G + + + + N K K ++I P N
Sbjct: 123 FFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182
Query: 201 PLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260
PLG M EL + N K + VSDE+Y VF+ I +
Sbjct: 183 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTL-----------PG 231
Query: 261 LWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAA-----TKMSSFGLVSSQTQYLLSR 315
+W R + S K FS+ G+++G Y + + + +
Sbjct: 232 MWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFET 291
Query: 316 MLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFE 375
L K Y L +++ + S L G+ G F D L
Sbjct: 292 ELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLT 351
Query: 376 AEK------ELWKKIIFEVGLNISPGSSCHCNEP-----GWFRICFANITEETLQVALQR 424
E K + VGL P S+ + + R CF +E LQ A +
Sbjct: 352 QETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEI 410
Query: 425 IKVFAQS 431
++ + S
Sbjct: 411 LRKWKGS 417
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 95.5 bits (236), Expect = 5e-22
Identities = 60/395 (15%), Positives = 135/395 (34%), Gaps = 36/395 (9%)
Query: 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKL 96
+I + +E+ E L+ + + + + GF + L +
Sbjct: 30 DVISLAGGLPAPETFPVETIKKIAVEV--LEEHADKALQ----YGTTKGFTPLRLALARW 83
Query: 97 MARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGV 156
M + + +++ AGS A + + +PGD ++ P Y + K+
Sbjct: 84 MEKRYD--IPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYD-P 140
Query: 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLIN 216
E + I + ++ V V G M+ L+
Sbjct: 141 EFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPA--GVTMSVDRRKKLLE 198
Query: 217 FSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS 276
+ IV D YS + + I D + R+ + + SK
Sbjct: 199 LANEYDFLIVEDGPYSELRYSGEPTPPIKHF------------DDYGRVIYLGTFSKIL- 245
Query: 277 MPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRK 336
PGFR+G + ++ + S L ++ ++ + + ++ + + +
Sbjct: 246 APGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKP 305
Query: 337 RKEMLVSGLK---VAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS 393
R++ ++ L+ G+ K G+F V + + K + ++ + G+
Sbjct: 306 RRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGI------DTKLMMERAV-AKGVAYV 358
Query: 394 PGS--SCHCNEPGWFRICFANITEETLQVALQRIK 426
PG H ++ R+ F + EET++ ++R+
Sbjct: 359 PGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLA 393
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 93.6 bits (231), Expect = 1e-21
Identities = 76/391 (19%), Positives = 139/391 (35%), Gaps = 62/391 (15%)
Query: 66 LKRNGESLFREL-ALFQDYH------GFPD------AKKELVKLMARIRG---------- 102
+ ES+F + L Q GFP + + + + R
Sbjct: 7 TEAAKESIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPAL 66
Query: 103 -----NKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVE 157
+ +P +V+T+G+T A L+ L PGD ++ P++ + D
Sbjct: 67 REALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKA 126
Query: 158 IVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINF 217
+ + GFR+ +SALE A + + +L+ P NP G +EL +
Sbjct: 127 RLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARL 180
Query: 218 SKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSM 277
+++ + ++SDE+Y +R + R V S K
Sbjct: 181 ARAHDLFLISDEVYD--------------ELYYGERPRRLREFAPERTFTVGSAGKRLEA 226
Query: 278 PGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKR 337
G+RVG I E + A + + + R+ R+R
Sbjct: 227 TGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRR 286
Query: 338 KEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397
+++L GL+ G+R F ++ +++ E + + P S+
Sbjct: 287 RDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDA-----------FRLVEEARVALIPASA 335
Query: 398 CHCNEP--GWFRICFANITEETLQVALQRIK 426
+ +P FR F TEE L +AL+R+
Sbjct: 336 FYLEDPPKDLFRFAFCK-TEEELHLALERLG 365
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 85.1 bits (209), Expect = 1e-18
Identities = 48/357 (13%), Positives = 107/357 (29%), Gaps = 51/357 (14%)
Query: 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYP 144
G P+ +K + +L+ G K + + + +A+P + P +P
Sbjct: 70 GEPEFQKAMGELILG-DGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWP 128
Query: 145 GFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGT 204
+ + G+ + + + ++ A+ +L NP G
Sbjct: 129 NHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAAKK---GDMVLLHGCCHNPTGA 184
Query: 205 AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264
+T + + + + + D Y G + + + A
Sbjct: 185 NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIP----------E 234
Query: 265 IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTC 324
+ I S SK+F + R G + + + + ++ QT + T
Sbjct: 235 VLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTV 294
Query: 325 N-----------YMKENRKRLRKRKEMLVSGLKVAGIRC----LKSNAGLFCWVDMRHLL 369
++ R + + +E L L+ + + G+F +
Sbjct: 295 LTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA---- 350
Query: 370 VSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
E K+I E G+ + S RI A + + T+ + + I
Sbjct: 351 -------TPEQVKRIKEEFGIYMVGDS----------RINIAGLNDNTIPILARAII 390
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 82.6 bits (202), Expect = 9e-18
Identities = 66/409 (16%), Positives = 145/409 (35%), Gaps = 38/409 (9%)
Query: 33 HNPSGIIQMGLAENQLSFDLL--ESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAK 90
+P II++ + + L +LL + + +EA++ + + G P+A+
Sbjct: 27 PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNG--------YFPTVGSPEAR 78
Query: 91 KELVKLMARIRG----NKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF 146
+ + K + +VL +G + + + D GD L+P P +P +
Sbjct: 79 EAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHY 138
Query: 147 DRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAM 206
+ K ++ + K +++TNPSNP G+
Sbjct: 139 ETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK-------TKLLIVTNPSNPCGSNF 191
Query: 207 THQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266
+ + + ++ ++ R+ + SDEIY+G VF + A +
Sbjct: 192 SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET--------TVPRV 243
Query: 267 IVYSLSKDFSMPGFRVGMIYSNNERV-----VSAATKMSSFGLVSSQTQYLLSRMLSDKK 321
I+ +K+ +PG+R+G + + + ++
Sbjct: 244 ILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNT 303
Query: 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELW 381
+ + K + + G+ ++ + L + + E +
Sbjct: 304 PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID-LEKYRDIKTDVEFF 362
Query: 382 KKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430
+K++ E + + PG+ H PG+ R+ E + A++RIK F Q
Sbjct: 363 EKLLEEENVQVLPGTIFHA--PGFTRLTTTR-PVEVYREAVERIKAFCQ 408
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 75.5 bits (184), Expect = 2e-15
Identities = 51/347 (14%), Positives = 102/347 (29%), Gaps = 29/347 (8%)
Query: 82 DYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTP 141
G ++ + + R+ G + D + + ++
Sbjct: 61 PMTGVQALREAIAQKTERLYG--YQPDADSDITVTAGATEALYAAITALVRNGDEVICFD 118
Query: 142 YYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201
IV FR+ + + + V++ P NP
Sbjct: 119 PSYDSYAP-AIALSGGIVKRMALQPPHFRVDWQEFAALLSE------RTRLVILNTPHNP 171
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261
T + L I ++SDE+Y F + + + +R +
Sbjct: 172 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAV------ 225
Query: 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKK 321
V S K + M G++VG + + + +
Sbjct: 226 -----AVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQ--LALADMLR 278
Query: 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELW 381
+ R+++++LV+ L + + L F VD + + E + L
Sbjct: 279 AEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLT 338
Query: 382 KKIIFEVGLNISPGSSCHCNEPG--WFRICFANITEETLQVALQRIK 426
+ E G+ P S + R+CFA E TL A +R++
Sbjct: 339 Q----EHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLR 380
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 74.5 bits (181), Expect = 5e-15
Identities = 54/357 (15%), Positives = 107/357 (29%), Gaps = 23/357 (6%)
Query: 78 ALFQDYHGFPDAKKELVKLMARI--RGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDA 135
L + G+ +E K + + ++ + ++ TAG A + PGD
Sbjct: 56 YLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDG 115
Query: 136 FLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLI 195
++ TP Y F +K + I + I LE + K +L
Sbjct: 116 VIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLF 170
Query: 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI-SIMEAVMDRN 254
+P NP+G EL + + + + SDEI+ + + SI E + D+
Sbjct: 171 CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKT 230
Query: 255 IDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLS 314
I + + +S + + + +
Sbjct: 231 ITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGK 290
Query: 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTF 374
+ K + + I+ W+D R L +
Sbjct: 291 WLDGCIKVIDKNQRIVKDFFEVNHPE---------IKAPLIEGTYLQWIDFRALKMD--- 338
Query: 375 EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431
K + + +I + + G G+ RI A +Q +L+R+ +
Sbjct: 339 --HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKD 392
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 69.1 bits (167), Expect = 2e-13
Identities = 65/348 (18%), Positives = 128/348 (36%), Gaps = 31/348 (8%)
Query: 82 DYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTP 141
G + ++ R + V P +++T G + A +A+PGD L+ P
Sbjct: 62 HSAGIWELREAFASYYKRRQR--VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 119
Query: 142 YYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201
+Y GV+++P+ GF I +N + KG++++NP NP
Sbjct: 120 FYA-NYNAFAKIAGVKLIPVTRRMEEGFAIP-------QNLESFINERTKGIVLSNPCNP 171
Query: 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261
G E+ +L+ ++ + ++ DE+YS VF
Sbjct: 172 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVF--------------RGEFASALSIE 217
Query: 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKK 321
++ ++ S+SK FS G RVG + + NE ++S A K++ L + + S L +
Sbjct: 218 SDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD 277
Query: 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELW 381
+ R R + + R K + + ++ + + F A L
Sbjct: 278 DSFFDFVRETYRERVETVL-KKLEEHGLKRFTKPSGAFYITAELP-VEDAEEF-ARWMLT 334
Query: 382 KKIIFEVGLNISPGSSCHCNE---PGWFRICFANITEETLQVALQRIK 426
+ ++P + RI + ++ L A+ +
Sbjct: 335 DFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLM 381
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 62.5 bits (150), Expect = 3e-11
Identities = 61/397 (15%), Positives = 134/397 (33%), Gaps = 35/397 (8%)
Query: 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKL 96
I G + +E +E + + G P K++++KL
Sbjct: 39 DAISFGGGVPDPETFPRKELAEIAKEIIE------KEYHYTLQYSTTEGDPVLKQQILKL 92
Query: 97 MARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGV 156
+ R+ G D + L+ T GS A + + D +L P Y G +
Sbjct: 93 LERMYGITG-LDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLAN 151
Query: 157 EIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLIN 216
+V + L + + +K V ++N NP G + ++ L+
Sbjct: 152 FVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYV-VSNFHNPAGVTTSLEKRKALVE 210
Query: 217 FSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS 276
++ + IV D+ Y ++ + I + ++ +
Sbjct: 211 IAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-------------GPERVVLLNTFSKVL 257
Query: 277 MPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRK 336
PG R+GM+ + E + S L S + L+ ++ +K + R+
Sbjct: 258 APGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRR 317
Query: 337 RKEMLVS-----GLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLN 391
++ ++++ + G++ +KS GLF W+ + + + +
Sbjct: 318 KRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAK-------RKKVF 370
Query: 392 ISPGSSCHCNE--PGWFRICFANITEETLQVALQRIK 426
PG + R+ F +E + ++R++
Sbjct: 371 YVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLR 407
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 57.9 bits (138), Expect = 9e-10
Identities = 54/362 (14%), Positives = 122/362 (33%), Gaps = 34/362 (9%)
Query: 78 ALFQDYHGFPDA-----KKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADP 132
L G+ + + D +V L+ ++
Sbjct: 24 RLMHGVFGYSRWKNDEFLAAIAHWFSTQHY--TAIDSQTVVYGPSVIYMVSELIRQWSET 81
Query: 133 GDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKG 192
G+ ++ TP Y F + ++ + ++G+ + LE + + K
Sbjct: 82 GEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPEC-----KI 136
Query: 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMD 252
+L+ +P NP G T EL + + + + ++SDEI+ V+ S +
Sbjct: 137 MLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA---- 192
Query: 253 RNIDESDDLWSRIHIVYSLSKDFSMPGFRVG-MIYSNNERVVSAATKMSSFGLVSSQTQY 311
++ S SK F++P I N+ + + + +SS +
Sbjct: 193 ---------RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVL 243
Query: 312 LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA--GIRCLKSNAGLFCWVDMRHLL 369
L+ ++ + ++ R L+ + + A + + W+D+R L
Sbjct: 244 ALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN 303
Query: 370 VSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429
+ + L K +I + + I PG + G+ R+ L+ + +
Sbjct: 304 ID-----DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAI 357
Query: 430 QS 431
++
Sbjct: 358 RA 359
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 49.8 bits (117), Expect = 4e-07
Identities = 58/347 (16%), Positives = 123/347 (35%), Gaps = 45/347 (12%)
Query: 81 QDYHGFPDAK-KELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLP 139
Q + +P+ + K +++ A+ G P +++++ G+ E L+ +PG +L
Sbjct: 48 QTLNRYPECQPKAVIENYAQYAG----VKPEQVLVSRGADEGIELLIRAFCEPGKDAILY 103
Query: 140 TPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPS 199
P G GVE + + Q VK V + +P+
Sbjct: 104 CPPTYGMYSVSAETIGVECRTVPTLDNWQLD---------LQGISDKLDGVKVVYVCSPN 154
Query: 200 NPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259
NP G + Q+ L+ ++ K I + + E ++
Sbjct: 155 NPTGQLINPQDFRTLLELTRGKAIVVADEAYI----------------EFCPQASLAGWL 198
Query: 260 DLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSD 319
+ + I+ +LSK F++ G R G NE V++ K+ + +S+ + ++ LS
Sbjct: 199 AEYPHLAILRTLSKAFALAGLRCGFTL-ANEEVINLLMKVIAPYPLSTPVADIAAQALSP 257
Query: 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKE 379
+ + + +R+ ++ + ++ + + + + + K
Sbjct: 258 QGIVAMRERVAQII-AEREYLIAALKEIPCVEQVFDSETNYILAR-----FKASSAVFKS 311
Query: 380 LWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIK 426
LW + I N P G RI T E Q + ++
Sbjct: 312 LWDQGIILRDQNKQPSL------SGCLRITVG--TREESQRVIDALR 350
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 7e-04
Identities = 52/329 (15%), Positives = 101/329 (30%), Gaps = 49/329 (14%)
Query: 108 DPNKLVLTAGSTAAN----ETLMFCLADPGDAFLLPTPYYPGFDRDLKW--RPGVEIVPI 161
DP ++V T+G+T ++ + G + + + R G E+ +
Sbjct: 64 DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYL 123
Query: 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK 221
+ I + LE A + V I + +N +G Q++ + +++
Sbjct: 124 APQRN--GIIDLKELEAA------MRDDTILVSIMHVNNEIG---VVQDIAAIGEMCRAR 172
Query: 222 RIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR 281
I + ++V ID S + S K + G
Sbjct: 173 GIIYH-----------------VDATQSVGKLPIDLSQLKVDLMSF--SGHKIYGPKG-- 211
Query: 282 VGMIYSNNERVVSAATKMSSFGLVSSQTQ-----YLLSRMLSDKKFTCNYMKENRKRLRK 336
+G +Y + V +M G + + M + M +RLR
Sbjct: 212 IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRG 271
Query: 337 RKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS 396
+ L +G+K L ++ + N E I+ L +S GS
Sbjct: 272 LRNRLWNGIKD------IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGS 325
Query: 397 SCHCNEPGWFRICFANITEETLQVALQRI 425
+C + A + L + R
Sbjct: 326 ACTSASLEPSYVLRALGLNDELAHSSIRF 354
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 39.4 bits (90), Expect = 7e-04
Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELW 381
+ + LR+ L + + + + + ++ L
Sbjct: 259 QDSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCER----EDIDLQRRLL 314
Query: 382 KKIIFEVGLNISPGSSCHCNEPGWFRICFANITE-ETLQVALQRI 425
+ + I ++ + ++R+ + + E L AL+ +
Sbjct: 315 TQ-----RILIRSCANYPGLDSRYYRVAIRSAAQNERLLAALRNV 354
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 37.2 bits (85), Expect = 0.004
Identities = 38/342 (11%), Positives = 80/342 (23%), Gaps = 36/342 (10%)
Query: 76 ELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDA 135
+ + + +L + F+ + ++ A L L
Sbjct: 63 AMITGDEAYAGSRNYYDLKDKAKEL------FNYDYIIPAHQGRGAENILFPVLLKYKQK 116
Query: 136 FLLPTPY------------YPGFDRDLKWRPGVEIVPIHCSSSNGFR--ITISALENAYQ 181
K V + + ++ I L+
Sbjct: 117 EGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIA 176
Query: 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG--TVFDSP 239
Q N+ +T S G ++ L + +K I +V D F
Sbjct: 177 QHGADNIVAIVSTVTCNSA-GGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKA 235
Query: 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM 299
+ I E + ++S G++ + + +
Sbjct: 236 R------DPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQ 289
Query: 300 SSFGLVSSQTQYLLSRMLSDKKFTCN---YMKENRKRLRKRKEMLVSGLKVAGIRCLKSN 356
+ T L+ +E + + L L+ AGI
Sbjct: 290 RCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPT 349
Query: 357 AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSC 398
G +VD + L+ + + L + G
Sbjct: 350 GGHAVFVDCKKLVPQIP----GDQFPAQAVINALYLESGVRA 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.95 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.93 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.91 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.91 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.9 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.89 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.89 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.88 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.85 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.85 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.84 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.82 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.81 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.8 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.78 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.73 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.73 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.72 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.72 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.72 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.71 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.71 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.7 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.69 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.69 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.69 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.69 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.67 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.67 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.66 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.66 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.66 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.63 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.62 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.62 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.62 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.61 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.61 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.6 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.6 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.58 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.58 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.58 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.58 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.57 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.57 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.57 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.56 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.55 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.55 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.54 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.46 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.41 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.4 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.18 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.18 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.97 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.89 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.82 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 82.66 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 80.5 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=2.8e-69 Score=544.14 Aligned_cols=430 Identities=72% Similarity=1.201 Sum_probs=375.2
Q ss_pred CcccccccccCCCCCccchhhhhhhcCCCCCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccC
Q 037587 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALF 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 80 (464)
|||++|.-+.|.++|.||..|..++.++|++..||.|+|+|+++||.++.+.+.+++.+.+........+.....++..|
T Consensus 1 ~~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y 80 (431)
T d1m7ya_ 1 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALF 80 (431)
T ss_dssp CCCSTTC-------CHHHHHHHHHHHSBCCSSSCTTSBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHC
T ss_pred CcchhhcccCCccCCchhhhhhhhhcCCCCCcCCCCcEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999988665433332222223456789
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 81 ~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
+++.|.++||++||++++++++.++++++++|++|+|+++++..++.++++|||.|++++|+|+.+...+....|+++++
T Consensus 81 ~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~ 160 (431)
T d1m7ya_ 81 QDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVP 160 (431)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEE
T ss_pred cCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceecc
Confidence 99999999999999999999887788899999999999999999999999999999999999999988887655899999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++++++++|.+|++.+++.+.+....+.++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+++
T Consensus 161 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~- 239 (431)
T d1m7ya_ 161 IHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP- 239 (431)
T ss_dssp EECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS-
T ss_pred ccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC-
Confidence 9999888899999999999998878888999999999999999999999999999999999999999999999888876
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
.+.++.++.++.......+..+++++++||||.||++|+|+||++++++.+.........+..+++..|.++.+++.+.
T Consensus 240 -~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~ 318 (431)
T d1m7ya_ 240 -SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDK 318 (431)
T ss_dssp -CCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCH
T ss_pred -CCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccc
Confidence 6677776654321111122346899999999999999999999999888777777777777778889998888888887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
.+.++++++++..++++++.+.+.|++.|+++.+|++|+|+|++++.........++.+++.++++++||.+.||+.|+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~ 398 (431)
T d1m7ya_ 319 KLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC 398 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCC
Confidence 77788999999999999999999999999999999999999999998877777777888999999999999999999998
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
..++||||+++..+++++++++++|+++++++
T Consensus 399 ~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 399 TEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp SSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 88899999998767889999999999999986
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=9.4e-67 Score=525.21 Aligned_cols=428 Identities=53% Similarity=1.017 Sum_probs=372.9
Q ss_pred CcccccccccCCCCCccchhhhhhhcCCCCCCCCCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccC
Q 037587 1 MLSRIASCDSHGQDSSYFLGWEAYENNPYDQLHNPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALF 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 80 (464)
.||++|-.+.|.++|.|+..|+.+..++|++..||.|+|+|+++||.++++.+.+++.+.+...... .+.....+..+|
T Consensus 1 ~~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~Y 79 (428)
T d1iaya_ 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANF 79 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC-----CHHHHHHC
T ss_pred CcccccccCCCCCCChhhHhHHHhccCCCCCcCCCCceEEeecccCccchHHHHHHHHhCCchhhhH-hHhhhCHHhccC
Confidence 5899999999999999999999999999999999999999999999999999999998865432111 122223456789
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 81 QDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 81 ~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
+++.|.++||++||+|+++.++..+++++++|++|+|+++++..++.+++++||.|++++|+|+.+...+....|+++++
T Consensus 80 ~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~ 159 (428)
T d1iaya_ 80 QDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIP 159 (428)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEE
T ss_pred cCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEE
Confidence 99999999999999999999987778899999999999999999999999999999999999999988777555899999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+++++.++|.+|++.++.+++.....++++++++++|||||||.+++.+++++|+++|++|+++||+||+|+++.|++.
T Consensus 160 v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~- 238 (428)
T d1iaya_ 160 IHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP- 238 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS-
T ss_pred eecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcc-
Confidence 9999888999999999999888777788999999999999999999999999999999999999999999999988876
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~ 320 (464)
.+.++.++..... ......+++++++||||.|+++|+|+||++++++.+.+.+.....+..++...|.++++.+.+.
T Consensus 239 -~~~s~~~~~~~~~--~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~ 315 (428)
T d1iaya_ 239 -QFVSIAEILDEQE--MTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDE 315 (428)
T ss_dssp -CCCCHHHHHTSGG--GTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred -cccccccccchhh--ccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhhh
Confidence 5667666543210 0012457899999999999999999999999888888888888877778889999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC 400 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~ 400 (464)
.++++++++.++.++++++.+.+.|+..|+++.+|++|+|+|++++..........+.+++..+++++||.+.||+.|+.
T Consensus 316 ~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~ 395 (428)
T d1iaya_ 316 KFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC 395 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred ccccccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCC
Confidence 88788999999999999999999999999999999999999999998777777777778999999999999999999998
Q ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 401 NEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 401 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+++||||+++..++++++++++||++++..++
T Consensus 396 ~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~~k 428 (428)
T d1iaya_ 396 QEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428 (428)
T ss_dssp SSSSEEEEECSSSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHHHHHHHHhhcC
Confidence 889999999987678899999999999997654
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.5e-57 Score=447.36 Aligned_cols=360 Identities=19% Similarity=0.370 Sum_probs=305.4
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|++|++.++ ++.+.+++.+..+ ....+|++..|.++||++||+++++.++.. ..++++|++
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~------------~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~-~~~~~~i~~ 91 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALD------------KGLTHYGPNIGLLELREAIAEKLKKQNGIE-ADPKTEIMV 91 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHCCC-CCTTTSEEE
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCccCCCCCcCCHHHHHHHHHHHHhhcccc-CCChheeee
Confidence 46899999998876 4667777666421 234689999999999999999998766532 246778999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.+++++||.|++++|+|+.|...+... |++++.++++++++|.+|+++|++.+.+ ++++++
T Consensus 92 t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 164 (388)
T d1gdea_ 92 LLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALI 164 (388)
T ss_dssp ESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-TCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred ccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHc-CCEEEEeecccccCCCCCHHHHHHhCcc------CCeEEE
Confidence 999999999999999999999999999999999998877 9999999998888899999999988754 789999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.+++++|+++|++++++||+||+|.++.+.+. .+.++..+.. ..+++++++||||+
T Consensus 165 ~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~S~SK~ 233 (388)
T d1gdea_ 165 INSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDG---------MFERTITVNGFSKT 233 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTT---------CGGGEEEEEESTTT
T ss_pred ECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccC--CCCChhhccC---------CCCeEEEEeCChhh
Confidence 999999999999999999999999999999999999999877665 4455555532 34789999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL 353 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 353 (464)
||++|+|+||++++++.+........ .....+.+.|.++..++.+..+ .++++..++.+++++..+.+.|...++.+.
T Consensus 234 ~~~~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (388)
T d1gdea_ 234 FAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTV 312 (388)
T ss_dssp TTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccCccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhcccccc
Confidence 99999999999996654444333222 2334677899999999998876 677888889999999999999999999999
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.|++|+|+|++++.... +..++++.+++++||.++||+.|+..+++|+||+++. +++++++++++|+++++++|
T Consensus 313 ~p~gg~fl~~~l~~~~~-----~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~-~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 313 KPKGAFYIFPRIRDTGL-----TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp CCCBTTEECCBCGGGTC-----CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHhcC
Confidence 99999999999975321 2336788889999999999999988778999999984 88999999999999999987
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=3.9e-56 Score=441.78 Aligned_cols=354 Identities=19% Similarity=0.367 Sum_probs=300.0
Q ss_pred CceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEE
Q 037587 36 SGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVL 114 (464)
Q Consensus 36 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~i 114 (464)
.++|+|++|++.++ ++.+.+++.+..+ ....+|++..|.++||++||+++.+.++ +.+++++|++
T Consensus 30 ~~vi~l~~G~p~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lR~aia~~~~~~~g--~~~~~~~i~i 95 (388)
T d1j32a_ 30 IDVCSFSAGEPDFNTPKHIVEAAKAALE------------QGKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNILV 95 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHhcc--cCCCCceEEE
Confidence 47899999998886 4667777766422 2346799999999999999999998887 5578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++..++.++++|||.|++++|+|+.|...+... |.+++.++.+.+++|.+|++++++.+.+ ++++++
T Consensus 96 t~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-~~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~~~ 168 (388)
T d1j32a_ 96 TNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA-EGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLV 168 (388)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHh-cCeEEEEecccccccCCCHHHHHHhCCC------CCeEEE
Confidence 999999999999999999999999999999999888877 9999999998888899999999988754 889999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.++|.+++++|+++|+++|++||+||+|.++.|+.. .+.++..+.+. ..+++++++||||.
T Consensus 169 ~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~--~~~s~~~~~~~--------~~~~~i~~~S~SK~ 238 (388)
T d1j32a_ 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA--QHLSIGAASPE--------AYERSVVCSGFAKT 238 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHH--------HHHTEEEEEESTTT
T ss_pred ECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCC--CCCCHHHhCcc--------cccceeEecCChhh
Confidence 999999999999999999999999999999999999998888765 45555444331 22689999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR 351 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 351 (464)
|+++|+|+||++++++ +.+.+.+.. ....++...|.++..++.+. .+++++.++.++++++.+.+.|.+. |+.
T Consensus 239 ~~~~GlRvG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 314 (388)
T d1j32a_ 239 YAMTGWRVGFLAGPVP-LVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLE 314 (388)
T ss_dssp TTCTTTCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCB
T ss_pred hhcchhHeEEEEECHH-HHHHHHHhhhhccccccHHHHHHHhhcccch---HHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 9999999999999655 444443333 23457788998888887654 4568889999999999999999987 899
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+.+|+||+|+|++++.... ++.+++.++++++||.+.||+.|+ .++|+||+++. +++++++++++|++++++
T Consensus 315 ~~~p~gg~~l~~~l~~~~~-----~~~~~~~~ll~~~gV~v~pG~~F~--~~~~~Rls~~~-~~e~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 315 CPKPDGAFYMFPSIAKTGR-----SSLDFCSELLDQHQVATVPGAAFG--ADDCIRLSYAT-DLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp CCCCCBTTEECCBCGGGTC-----CHHHHHHHHHHHHCEECEEGGGGT--CTTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCCceEEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEeccccC--CCCeEEEEEeC-CHHHHHHHHHHHHHHHHH
Confidence 9999999999999985422 234688899989999999999997 47899999984 899999999999999986
Q ss_pred h
Q 037587 432 C 432 (464)
Q Consensus 432 ~ 432 (464)
.
T Consensus 387 l 387 (388)
T d1j32a_ 387 I 387 (388)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.1e-55 Score=433.80 Aligned_cols=350 Identities=20% Similarity=0.405 Sum_probs=292.5
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|++|++.++ ++.+.+++.+... ....+|+++.|.++||++|++++.+.++ ..+++++|+
T Consensus 30 G~~vi~l~~g~p~~~~p~~i~~a~~~~~~------------~~~~~Y~~~~G~~~lR~~ia~~~~~~~~--~~~~~~~i~ 95 (382)
T d1b5pa_ 30 GVDLVALTAGEPDFDTPEHVKEAARRALA------------QGKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETI 95 (382)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEE
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCCCCHHHHHHHHhhhhhhcc--cccccccce
Confidence 457899999998886 4677777766422 2356899999999999999999988766 557899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|+.|...++.. |.+++.++++++++|.+|++.+++.+.+ +++++
T Consensus 96 it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i 168 (382)
T d1b5pa_ 96 VTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA-GGVVVEVETLPEEGFVPDPERVRRAITP------RTKAL 168 (382)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEE
T ss_pred ecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHh-cCeEEEEecccccccCCCHHHHHHhCCC------CCeEE
Confidence 9999999999999999999999999999999999988877 9999999998888899999999987654 88999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. .+.+ ... ..+++++++||||
T Consensus 169 ~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~-~~~-----------~~~~~i~~~s~SK 234 (382)
T d1b5pa_ 169 VVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE--HFSP-GRV-----------APEHTLTVNGAAK 234 (382)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC--CCCG-GGT-----------CTTTEEEEEESTT
T ss_pred EECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCC--CCCH-HHc-----------CCCCEEEEecchh
Confidence 9999999999999999999999999999999999999999888765 3222 222 3378999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 351 (464)
.|++||+|+||++++++.+ +.+.... ....++.+.|.++..++.+......+++..++.++++++.+.+.+...|+.
T Consensus 235 ~~~~~GlR~G~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 313 (382)
T d1b5pa_ 235 AFAMTGWRIGYACGPKEVI-KAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLK 313 (382)
T ss_dssp TTTCGGGCCEEEECCHHHH-HHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hccCcHhheEEEEECHHHH-HHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCe
Confidence 9999999999999965544 4343332 223467788888888887766657888888999999999999999999999
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+.+|+||+|+|++++.... ++.++.+.+ .++||.|+||+.|+. ++++||+++. ++|++++++++|++++
T Consensus 314 ~~~p~gg~~~~~~~~~~~~-----~~~~~~~~l-~e~gV~v~PG~~F~~--~~~iRis~~~-~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 314 AVRPSGAFYVLMDTSPIAP-----DEVRAAERL-LEAGVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVL 382 (382)
T ss_dssp BCCCSBTTEEEEECTTTCS-----SHHHHHHHH-HHTTEECEESGGGTC--TTEEEEECCS-CHHHHHHHHHHGGGGC
T ss_pred EecCCceEEEeEeCCCCCC-----CHHHHHHHH-HHCCEEEEeCcccCC--CCeEEEEEcC-CHHHHHHHHHHHHHhC
Confidence 9999999999999965321 122344544 578999999999974 6899999984 8899999999998763
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=8.1e-54 Score=428.75 Aligned_cols=374 Identities=19% Similarity=0.318 Sum_probs=295.9
Q ss_pred CCCCCCCCCceEEeecccccccH-----HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 28 PYDQLHNPSGIIQMGLAENQLSF-----DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~~n~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
.+.+..++.++|+|++|++.+++ +.+.++++.... .....+|++..|.++||++||+++.+.++
T Consensus 22 ~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~LReaia~~~~~~~~ 90 (412)
T d1bw0a_ 22 NAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAID-----------SQECNGYFPTVGSPEAREAVATWWRNSFV 90 (412)
T ss_dssp TCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHH-----------TTCSSSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred hcCCCCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhh-----------CCCCCCCCCCcCCHHHHHHHHHHHHHhcC
Confidence 34555677889999999876532 334444443211 13456899999999999999999998764
Q ss_pred C----CCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHH
Q 037587 103 N----KVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALEN 178 (464)
Q Consensus 103 ~----~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 178 (464)
. +.++++++|++|+|+++++..++++++++||.|++++|+|+.|...+... |++++.++++++++|.++++.+++
T Consensus 91 ~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~~~~~~~~~~~~~~l~~ 169 (412)
T d1bw0a_ 91 HKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY-GIGMHFYNCRPENDWEADLDEIRR 169 (412)
T ss_dssp CSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHH
T ss_pred cccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhcc-CccccccccccccccchhhHHHHh
Confidence 2 24578999999999999999999999999999999999999999888877 999999999888889999999988
Q ss_pred HHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCC
Q 037587 179 AYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDES 258 (464)
Q Consensus 179 ~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~ 258 (464)
.+.+ ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++. ...+........
T Consensus 170 ~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~--~~~~~~~~~~~~----- 236 (412)
T d1bw0a_ 170 LKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGK--DPNATFTSVADF----- 236 (412)
T ss_dssp HCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSS--CTTCCCCCTTSS-----
T ss_pred hhhc------cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCC--CCcccccccccc-----
Confidence 7654 889999999999999999999999999999999999999999999888765 222222121111
Q ss_pred CCCCCcEEEEcCCCcCCCCCccEEEEEEecCH-----HHHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHH
Q 037587 259 DDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE-----RVVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRK 332 (464)
Q Consensus 259 ~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~-----~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 332 (464)
+...++++++||||.|+++|+|+||++++++ .+........ .....+...|.++...+.+.. ++++.+.++
T Consensus 237 -~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 313 (412)
T d1bw0a_ 237 -ETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVA 313 (412)
T ss_dssp -CCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHH
T ss_pred -ccccccccccccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhccccccccc--ccccccccc
Confidence 2446788999999999999999999998642 2222222222 223345566655555444332 567889999
Q ss_pred HHHHHHHHHHHHHHhC-CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEee
Q 037587 333 RLRKRKEMLVSGLKVA-GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFA 411 (464)
Q Consensus 333 ~~~~~~~~l~~~l~~~-g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~ 411 (464)
.++++++.+.+.|.+. |+.+..|+||+|+|++++..... ....+.+++.++++++||.|.||+.|+ .++|+|||++
T Consensus 314 ~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~-~~~~~~~~~~~ll~~~gV~v~PG~~Fg--~~g~iRis~~ 390 (412)
T d1bw0a_ 314 KIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR-DIKTDVEFFEKLLEEENVQVLPGTIFH--APGFTRLTTT 390 (412)
T ss_dssp HHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS-SCCSHHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECC
T ss_pred hhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcC-CCCCHHHHHHHHHHhCCEEEEeccccC--CCCeEEEEEc
Confidence 9999999999999775 89999999999999998743221 123455789999999999999999997 4789999998
Q ss_pred cCCHHHHHHHHHHHHHHHHhhC
Q 037587 412 NITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 412 ~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
. ++++++++++||+++++++.
T Consensus 391 ~-~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 391 R-PVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp S-CHHHHHHHHHHHHHHHHHHB
T ss_pred C-CHHHHHHHHHHHHHHHHhcC
Confidence 4 88999999999999999864
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1e-53 Score=425.25 Aligned_cols=355 Identities=22% Similarity=0.369 Sum_probs=294.6
Q ss_pred CCceEEeecccc---ccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 35 PSGIIQMGLAEN---QLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 35 ~~~~i~l~~~~n---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
..++|+|++|++ +++ ++.+.+++.+... .....|+++.|.++||++||+++++.+| +.++++
T Consensus 29 G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~------------~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~ 94 (395)
T d1xi9a_ 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK------------EGHNYYGDSEGLPELRKAIVEREKRKNG--VDITPD 94 (395)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGG
T ss_pred CCCeEECCCCCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHhhhhccc--cccccc
Confidence 346899999875 343 4667777666421 2345799999999999999999999887 557899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCce
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKV 190 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 190 (464)
+|++|+|+++++.+++.+++.+||.|++++|+|+.|...+... |++++.+++..+++|.+|++.+++.+.+ ++
T Consensus 95 ~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~~~~d~~~~~~~~~~------~~ 167 (395)
T d1xi9a_ 95 DVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY-GGKPVEYRTIEEEDWQPDIDDIRKKITD------RT 167 (395)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEEEEGGGTSEECHHHHHHHCCT------TE
T ss_pred ccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhc-CCEEEEEeccccccccchHHHHHHhhcc------cc
Confidence 9999999999999999999999999999999999999988877 9999999988778899999999987754 88
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcC
Q 037587 191 KGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYS 270 (464)
Q Consensus 191 ~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S 270 (464)
++++++|||||||.++|.+++++|+++|++++++||+||+|.++.|+.. . .+...+. ..+++++++|
T Consensus 168 ~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~-~~~~~~~----------~~~~vi~~~S 234 (395)
T d1xi9a_ 168 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE--H-ISPGSLT----------KDVPVIVMNG 234 (395)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC--C-CCHHHHC----------SSSCEEEEEE
T ss_pred cEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccccccc--c-cchhhcC----------CCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999877654 2 3333332 3368999999
Q ss_pred CCcCCCCCccEEEEEEecC-----HHHHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037587 271 LSKDFSMPGFRVGMIYSNN-----ERVVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSG 344 (464)
Q Consensus 271 ~SK~~g~~GlRiG~l~~~~-----~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (464)
|||+|+++|+|+||++++. ..+.+...... ..+.++.++|.++..++.+. .+++++.++.++++++.+.+.
T Consensus 235 ~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~ 311 (395)
T d1xi9a_ 235 LSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKR 311 (395)
T ss_dssp STTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987532 12222222222 23456788999888888754 356888899999999999999
Q ss_pred HHhCC-CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHH
Q 037587 345 LKVAG-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 345 l~~~g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 423 (464)
|.+.+ +.+.+|+||+|+|++++.... .++.+++.++++++||.|.||+.|+..+++|+||+++. ++|+++++++
T Consensus 312 L~~~~~~~~~~p~gg~~~~~~l~~~~~----~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~-~~e~l~eal~ 386 (395)
T d1xi9a_ 312 LNEIPGISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMD 386 (395)
T ss_dssp HHTSTTEECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHH
T ss_pred HHhCCCceecCCCeeEEEeEECCCCCC----CCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecC-CHHHHHHHHH
Confidence 99985 678889999999999985422 12346788899999999999999988778999999984 8999999999
Q ss_pred HHHHHHHh
Q 037587 424 RIKVFAQS 431 (464)
Q Consensus 424 ~l~~~l~~ 431 (464)
+|++++++
T Consensus 387 rl~~~l~e 394 (395)
T d1xi9a_ 387 RFEKFMKE 394 (395)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999986
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=1.6e-52 Score=419.89 Aligned_cols=363 Identities=21% Similarity=0.286 Sum_probs=294.4
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcEEE
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKLVL 114 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i~i 114 (464)
++|+|+.+.+.++ ++.+.+++.+.... . -....+|++..|.++||++||+++.+.+| ..+++ ++|++
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~------~---~~~~~~Y~~~~G~~~lReaiA~~~~~~~g--~~~~p~~~I~i 95 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANS------P---DPLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVLV 95 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTC------S---CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEEE
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhC------C---CccCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCccceEEE
Confidence 5799999988765 46677776664221 0 12346799999999999999999999887 44664 79999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCC--------CcccCHHHHHHHHHHHhhc
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSN--------GFRITISALENAYQQAQTL 186 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~l~~~i~~~~~~ 186 (464)
|+|+++++.+++++++++||.|++++|+|+.|...+... |.+++.+++++++ .|..+.+.+.....
T Consensus 96 t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 169 (418)
T d2r5ea1 96 TVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA-GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN----- 169 (418)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC-----
T ss_pred cCCCchhhhhhhhhccccccceeccccccchhhHHHHHc-CCeEEEEEecccccccchhhhhhhhhHHHHhhhhh-----
Confidence 999999999999999999999999999999999998877 9999999986543 35677777776543
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
.++++++++|||||||.++|.+++++|+++|++++++||+||+|.++.+.+. ...++..+.. ..++++
T Consensus 170 -~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~--~~~s~~~~~~---------~~~~~i 237 (418)
T d2r5ea1 170 -EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTLPG---------MWERTI 237 (418)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTT---------TGGGEE
T ss_pred -ccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCC--cccccccccc---------ccceee
Confidence 3889999999999999999999999999999999999999999999877665 4455555433 447999
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCch----hhHHHHHHHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKK----FTCNYMKENRKRLRKRKEM 340 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~ 340 (464)
+++||||.++++|+|+||++++++.+ +.+.+.. ..+.++++.|.++..++.... ..+++++++++.++.+++.
T Consensus 238 ~~~S~SK~~~~pGlRiG~~~~~~~~i-~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 316 (418)
T d2r5ea1 238 TIGSAGKTFSLTGWKIGWAYGPEALL-KNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDY 316 (418)
T ss_dssp EEEEHHHHTTCGGGCCEEEESCHHHH-HHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHH
T ss_pred eeecCCccccCCCcccccccccchhh-hhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhh
Confidence 99999999999999999999965544 4443332 234577888887776654321 1256788999999999999
Q ss_pred HHHHHHhCCCeeecCCccEEEEEecCcccccC------ChhHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCeEEEE
Q 037587 341 LVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSN------TFEAEKELWKKIIFEVGLNISPGSSCHCN-----EPGWFRIC 409 (464)
Q Consensus 341 l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~------~~~~~~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~Ris 409 (464)
+.+.|++.|+++..|+||+|+|++++...... ...++.+++..+++++||.+.||+.|+.. +.+|||||
T Consensus 317 l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis 396 (418)
T d2r5ea1 317 MASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYC 396 (418)
T ss_dssp HHHHHHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEE
T ss_pred HHhhHhhcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEE
Confidence 99999999999999999999999997542211 22356689999999999999999999753 25799999
Q ss_pred eecCCHHHHHHHHHHHHHHHH
Q 037587 410 FANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 410 ~~~~~~e~l~~~l~~l~~~l~ 430 (464)
++. ++|++++++++|++++.
T Consensus 397 ~~~-~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 397 FFK-KDENLQKAAEILRKWKG 416 (418)
T ss_dssp CCS-CHHHHHHHHHHHHHHHT
T ss_pred ecC-CHHHHHHHHHHHHHHHc
Confidence 975 88999999999999874
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=2.4e-52 Score=415.47 Aligned_cols=359 Identities=18% Similarity=0.223 Sum_probs=287.8
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|+++++.++ ++.+.+++.+..+ ....+|++ |.++||++||+++++.+| +.+++++|+
T Consensus 30 g~~vi~l~~g~pdf~~p~~v~~al~~~~~------------~~~~~Y~~--g~~~Lr~aia~~~~~~~g--~~~~~~~I~ 93 (394)
T d1c7na_ 30 GNEVVPLSVADMEFKNPPELIEGLKKYLD------------ETVLGYTG--PTEEYKKTVKKWMKDRHQ--WDIQTDWII 93 (394)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHH------------HCCCSSBC--CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh------------CCCcCCCC--CCHHHHHHHHHHHHHhcC--CCCCCcceE
Confidence 457999999999886 4777777776432 22456853 679999999999999887 557899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC-CCCCcccCHHHHHHHHHHHhhcCCceEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS-SSNGFRITISALENAYQQAQTLNLKVKG 192 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 192 (464)
+|+|+++++..+++++++|||.|++++|+|..+...+... |.+.+.++.. .+..|.+|.+.++..+. ++++++
T Consensus 94 vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~ 167 (394)
T d1c7na_ 94 NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ-ERKIIECELLEKDGYYTIDFQKLEKLSK-----DKNNKA 167 (394)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTT-TCEEEECCCEEETTEEECCHHHHHHHHT-----CTTEEE
T ss_pred eeccchhhhhhhhccccccccccccccCcccchhhHHhhh-hhcccccccccccccccchhhhhhhhhc-----cccceE
Confidence 9999999999999999999999999999999998888876 8888888764 34567788888877653 347899
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCC
Q 037587 193 VLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLS 272 (464)
Q Consensus 193 vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~S 272 (464)
++++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. ...+......+ ..++++++.|+|
T Consensus 168 i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~~~--------~~~~~i~~~s~S 237 (394)
T d1c7na_ 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQ--------LADKTITFTAPS 237 (394)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHH--------HHTTEEEEECSH
T ss_pred EEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCc--cccchhhhhcc--------cccceeeccccc
Confidence 99999999999999999999999999999999999999999888765 33333322221 237899999999
Q ss_pred cCCCCCccEEEEEEecCHHHHHHHHHhcccCC-CC-hHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC--
Q 037587 273 KDFSMPGFRVGMIYSNNERVVSAATKMSSFGL-VS-SQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-- 348 (464)
Q Consensus 273 K~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~-~s-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 348 (464)
|.||++|+|+||++++++.+.+.+.+...... .+ ...+.+++. ...... .++.++.++.++++++.+.+.++..
T Consensus 238 K~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (394)
T d1c7na_ 238 KTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACE-ICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHP 315 (394)
T ss_dssp HHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHH-HHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccccccccccChhhhhhhhhhhhhccccccccccchhhh-hhhcch-hhhhcccccccchhhhhhhhhhhcccc
Confidence 99999999999999988888777666554332 22 222222222 222222 5678888888899989988888765
Q ss_pred CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 349 GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 349 g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
++.+.+|+||+|+|++++... .+..+++..|++++||.+.||+.|+..+++|+|||++ .++|++++++++|+++
T Consensus 316 ~~~~~~p~g~~~~~~~~~~~~-----~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~i~eal~rl~~~ 389 (394)
T d1c7na_ 316 EIKAPLIEGTYLQWIDFRALK-----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLERLNKA 389 (394)
T ss_dssp TSBCCCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHHH
T ss_pred ceeecCCCceeEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe-CCHHHHHHHHHHHHHH
Confidence 677888999999999998532 1234688899988899999999998777899999998 4889999999999999
Q ss_pred HHhhC
Q 037587 429 AQSCN 433 (464)
Q Consensus 429 l~~~~ 433 (464)
+++.|
T Consensus 390 l~~Lk 394 (394)
T d1c7na_ 390 LKDLK 394 (394)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-51 Score=407.18 Aligned_cols=346 Identities=23% Similarity=0.386 Sum_probs=284.7
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
..++|+|++|.+.++ ++.+.+++.+... +....|++..|.++||+++++++++.++ ..+++++|+
T Consensus 27 G~~vI~l~~G~p~~~~p~~i~~~~~~~~~------------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~~i~ 92 (375)
T d1o4sa_ 27 GEDVINLTAGEPDFPTPEPVVEEAVRFLQ------------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVV 92 (375)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEE
T ss_pred CCCeEECCCcCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCcCCHHHHHHHHhhhhhccc--ccccccccc
Confidence 456999999998875 4666666655321 2346799999999999999999998877 557899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++++++++||.|++++|+|+.|...+... |...+.+++++++++.++.+.++.... .+++++
T Consensus 93 ~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 165 (375)
T d1o4sa_ 93 VTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA-GGTVNVVETFMSKNFQPSLEEVEGLLV------GKTKAV 165 (375)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHHTCC------TTEEEE
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhcc-ccccccccccccccccchhHHHHHhhc------cCccEE
Confidence 9999999999999999999999999999999999888877 999999999888889999888877543 388999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.+... . ........ ..+++++++||||
T Consensus 166 ~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~-~~~~~~~~---------~~~~~i~~~S~SK 233 (375)
T d1o4sa_ 166 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE--F-TSILDVSE---------GFDRIVYINGFSK 233 (375)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC--C-CCHHHHCS---------SSTTEEEEEESTT
T ss_pred EEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccc--c-cccccccC---------CCCCEEEEeechh
Confidence 9999999999999999999999999999999999999998766544 2 23333322 4589999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhccc-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSF-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 352 (464)
.||+||+|+||++++++.+.......... ...+...+......+... ....++.++++++.+.+.|++.|+++
T Consensus 234 ~~~l~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~l~~~g~~~ 307 (375)
T d1o4sa_ 234 SHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKF 307 (375)
T ss_dssp TTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hccCCccccccccccccchhhhhhhhccccccccccchhhhhhhcccc------hhhhHHHHHHHHHHHHHHHHhcCceE
Confidence 99999999999999655444333322222 235556666666655543 34456678889999999999999999
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
.+|++|+|+|++++.. +.+++.++++++||.|+||+.|+ .++|+||+++. +++++++++++|+++++
T Consensus 308 ~~p~gg~f~~~~~~~~--------~~~~~~~ll~~~gV~v~pG~~F~--~~g~iRis~~~-~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 308 VEPEGAFYLFFKVRGD--------DVKFCERLLEEKKVALVPGSAFL--KPGFVRLSFAT-SIERLTEALDRIEDFLN 374 (375)
T ss_dssp CCCSBSSEEEEECSSC--------HHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred ecCCccEEEEEECCCC--------HHHHHHHHHHhCCEEEEEccccC--CCCeEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 9999999999999741 34678888988999999999997 47899999984 89999999999999985
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-51 Score=413.93 Aligned_cols=364 Identities=19% Similarity=0.354 Sum_probs=294.7
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC-CcE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP-NKL 112 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i 112 (464)
..++|+|++|++.++ ++.+.+++.+.... -....+|++..|.++||++||+++++.+| .++++ ++|
T Consensus 24 ~~dvI~l~~G~p~~~~p~~v~~a~~~al~~----------~~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I 91 (418)
T d1w7la_ 24 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSG----------DFMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNV 91 (418)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTSS----------CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHE
T ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHHhC----------CCcccCCCCCcCCHHHHHHHHHHHHHHhC--CCCCcccce
Confidence 346899999998776 46677777664211 12345799999999999999999998877 44554 689
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC----------CCCcccCHHHHHHHHHH
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS----------SNGFRITISALENAYQQ 182 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~d~~~l~~~i~~ 182 (464)
++|+|+++++..++++++++||.|++++|+|+.|...+... |.+++.++..+ +.+|.+|.+++....
T Consensus 92 ~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 168 (418)
T d1w7la_ 92 LVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMA-GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF-- 168 (418)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEECC---CCSEEGGGEECCHHHHHHHC--
T ss_pred eeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHc-CCEeeccccccccccccccccccCcccchhhhhccc--
Confidence 99999999999999999999999999999999999988877 99998888653 235667766665543
Q ss_pred HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCC
Q 037587 183 AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (464)
.+++++++++|||||||.++|.+++++|+++|+++++++|+||+|.++.|++. .+.++.++.. ..
T Consensus 169 ----~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~--~~~~~~~~~~---------~~ 233 (418)
T d1w7la_ 169 ----TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISIASLPG---------MW 233 (418)
T ss_dssp ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTT---------TG
T ss_pred ----cccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCC--CCCCHHHccc---------cc
Confidence 34889999999999999999999999999999999999999999999988766 4556555532 34
Q ss_pred CcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchh----hHHHHHHHHHHHHH
Q 037587 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKF----TCNYMKENRKRLRK 336 (464)
Q Consensus 263 ~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~ 336 (464)
++++++.|+||.+++||+|+||++++++ +...+.+... ..+++++.|.++..++.+... ..+++...++.+++
T Consensus 234 ~~~i~~~S~SK~~~~pG~RvG~~v~~~~-~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (418)
T d1w7la_ 234 ERTLTIGSAGKTFSATGWKVGWVLGPDH-IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQR 312 (418)
T ss_dssp GGEEEEEEHHHHTTCGGGCCEEEECCHH-HHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHH
T ss_pred cccceecccCccccCCCCcccccccchh-hhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhh
Confidence 7899999999999999999999999654 4444444432 345788899888888765432 14567888999999
Q ss_pred HHHHHHHHHHhCCCeeecCCccEEEEEecCcccc-------cCChhHHHHHHHHHHHhcCeEEeCCCCCCC-----CCCC
Q 037587 337 RKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV-------SNTFEAEKELWKKIIFEVGLNISPGSSCHC-----NEPG 404 (464)
Q Consensus 337 ~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~-------~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~-----~~~~ 404 (464)
+++.+.+.|++.|+++.+|+||+|+|++++.... ......+.+++.+||+++||.|.||+.|+. ..++
T Consensus 313 ~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~ 392 (418)
T d1w7la_ 313 CRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDH 392 (418)
T ss_dssp HHHHHHHHHHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCS
T ss_pred hhhhhhhhhhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCC
Confidence 9999999999999999999999999999975321 111234557899999999999999999974 2468
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHHHH
Q 037587 405 WFRICFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 405 ~~Ris~~~~~~e~l~~~l~~l~~~l~ 430 (464)
|||||++. +++.+++++++|+++..
T Consensus 393 ~iRis~~~-~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 393 YIRFCFVK-DEATLQAMDEKLRKWKV 417 (418)
T ss_dssp EEEEECCC-CHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 99999985 88999999999998753
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-50 Score=398.21 Aligned_cols=353 Identities=14% Similarity=0.230 Sum_probs=284.5
Q ss_pred eEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeC
Q 037587 38 IIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTA 116 (464)
Q Consensus 38 ~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~ 116 (464)
+|+|++++..+++ +.+.+++.+... .....|++..| +++|++|++++.+++| +++++++|++|+
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~------------~~~~~Y~~~~g-~~lr~~ia~~~~~~~g--~~~~~~~i~it~ 65 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLM------------HGVFGYSRWKN-DEFLAAIAHWFSTQHY--TAIDSQTVVYGP 65 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCSCC-HHHHHHHHHHHHHHSC--CCCCGGGEEEES
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHh------------CCCCCCCCCCC-HHHHHHHHHHHHHHhC--CCCCcceEEEeC
Confidence 5889999988874 778887776421 23457998888 7899999999999887 557899999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC-CCCcccCHHHHHHHHHHHhhcCCceEEEEE
Q 037587 117 GSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS-SNGFRITISALENAYQQAQTLNLKVKGVLI 195 (464)
Q Consensus 117 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~vil 195 (464)
|+++++..++.+++++||+|++++|+|+.|...+... |.+++.++.+. .++|.+|++.+++.+.+ ++++++++
T Consensus 66 G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~~~~~~~~-----~~~~~i~l 139 (361)
T d1d2fa_ 66 SVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECKIMLL 139 (361)
T ss_dssp CHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEEEEEE
T ss_pred CHHHHHHHHhhhccccccccccccccccchhHHHHhh-cceEEeecccccccccccccccchhhccc-----CCceeEEe
Confidence 9999999999999999999999999999998888776 99999988763 45678999999988753 48999999
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCC
Q 037587 196 TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDF 275 (464)
Q Consensus 196 ~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~ 275 (464)
+|||||||.++|.+++++|+++|+++++++|+||+|.++.|++. ...++... ..++++++.|+||.+
T Consensus 140 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~--~~~~~~~~-----------~~~~~v~~~s~SK~~ 206 (361)
T d1d2fa_ 140 CSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNV-----------ARGDWALLTSGSKSF 206 (361)
T ss_dssp ESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGT-----------CCSSEEEEECSHHHH
T ss_pred cccccccccccchhhhhhhhhhhhhhheeeeecccccccccccc--cccccccc-----------ccccccccccccccc
Confidence 99999999999999999999999999999999999999888765 33343333 347899999999999
Q ss_pred CCCccEEEEEEecCHHHHH-HHHHhcccC---CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC--C
Q 037587 276 SMPGFRVGMIYSNNERVVS-AATKMSSFG---LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA--G 349 (464)
Q Consensus 276 g~~GlRiG~l~~~~~~~~~-~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g 349 (464)
+++|+|+||++.+...... ......... .++...+.++...+.. ..++.++.+..++++++.+.+.+.+. +
T Consensus 207 ~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 283 (361)
T d1d2fa_ 207 NIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPE 283 (361)
T ss_dssp TCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhc---cchhhhcccccchhhHHHHHHHhhhhccc
Confidence 9999999999876654433 333333222 2333334333333322 24567788888888888888877665 6
Q ss_pred CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 350 IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 350 ~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+.+.+|++|+|+|++++... .+..+++.+|++++||.|.||+.|+..+.+|+|||++ .+++++++++++|++++
T Consensus 284 ~~~~~p~gg~~~~~~l~~~~-----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~-~~~e~l~~al~rl~~~l 357 (361)
T d1d2fa_ 284 LNWQIPQSTYLAWLDLRPLN-----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGLINAI 357 (361)
T ss_dssp CCCCCCSBCSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred ccccccCceeEEEEEccCCC-----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc-CCHHHHHHHHHHHHHHH
Confidence 78888999999999986321 1234688899999999999999998877889999998 48899999999999999
Q ss_pred HhhC
Q 037587 430 QSCN 433 (464)
Q Consensus 430 ~~~~ 433 (464)
++.|
T Consensus 358 ~~lr 361 (361)
T d1d2fa_ 358 RAVR 361 (361)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 9875
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.1e-50 Score=396.35 Aligned_cols=349 Identities=20% Similarity=0.306 Sum_probs=288.7
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC-cEEE
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN-KLVL 114 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-~i~i 114 (464)
++|+|+.|.+.++ ++.+++++.+... .....|++..|.++||++||+++++.+| +.++++ +|++
T Consensus 27 ~~i~l~~G~Pd~~~p~~i~~a~~~~~~------------~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I~v 92 (382)
T d1u08a_ 27 QAINLSQGFPDFDGPRYLQERLAHHVA------------QGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITV 92 (382)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEEE
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCcCCHHHHHHHHHHHHHHhC--CCCCCCceEEe
Confidence 7799999988775 4667777666421 2356899999999999999999999887 446666 5999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 115 TAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 115 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
|+|+++++.+++++++++||.|++++|+|+.+...+... |..++.++++. +++.+|++++++.+.+ ++++++
T Consensus 93 t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~i~ 164 (382)
T d1u08a_ 93 TAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALS-GGIVKRMALQP-PHFRVDWQEFAALLSE------RTRLVI 164 (382)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCT-TTCCCCHHHHHHHCCT------TEEEEE
T ss_pred ccchHHHHHHHHhhcccccceEEEecccccchhhhhhhc-cccceeccccc-ccccCCHHHHhhhhcc------CccEEE
Confidence 999999999999999999999999999999999888877 88888888764 5677899999887654 899999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.+++.+++++|+++|.+++++++.||+|..+.+.+. ...+...... ..++++++.|+||.
T Consensus 165 l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~--~~~~~~~~~~---------~~~~~i~~~s~SK~ 233 (382)
T d1u08a_ 165 LNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ--GHASVLAHPQ---------LRERAVAVSSFGKT 233 (382)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS--CCCCGGGSHH---------HHTTEEEEEEHHHH
T ss_pred ECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccc--cccccccccc---------ccCcEEEEeecccc
Confidence 999999999999999999999999999999999999998766654 2223222222 23789999999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRC 352 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 352 (464)
+++||+|+||++++++.+ +.+.+.. ....++.+.|.++..++.+. +++++++++.++++++.+.+.+...|+++
T Consensus 234 ~~~pG~RiG~~v~~~~~~-~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 309 (382)
T d1u08a_ 234 YHMTGWKVGYCVAPAPIS-AEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEI 309 (382)
T ss_dssp TTCGGGCCEEEECCHHHH-HHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEE
T ss_pred ccCCcccchhhhccchhH-HHHHhhhcccccccccccccccccccccc---hHHHHHHHHHHHhhhhhhhhhhccCCcEE
Confidence 999999999999965544 4333332 23457889999999998754 35688899999999999999999889999
Q ss_pred ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHH
Q 037587 353 LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETLQVALQRIKV 427 (464)
Q Consensus 353 ~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~l~~ 427 (464)
.+|+||+|+|++++.... .+..+++.++++++||.|.||+.|+.. +.+|||||++. ++|+++++++||++
T Consensus 310 ~~p~gg~~~~~~~~~~~~----~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 310 LPCEGTYFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 381 (382)
T ss_dssp CCCCBSSEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred ecCCceEEEEEecCCCCC----CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHhC
Confidence 999999999999985322 123468899999999999999999753 45799999985 89999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-49 Score=397.05 Aligned_cols=368 Identities=17% Similarity=0.273 Sum_probs=291.5
Q ss_pred CCCceEEeeccccc---ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 34 NPSGIIQMGLAENQ---LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 34 ~~~~~i~l~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
...++|+|+.+.+. +|.+.+.+++++.... .......|+++.|.++||++||+++++.+|.. .++++
T Consensus 36 ~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~---------~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~-~~~~~ 105 (420)
T d1vp4a_ 36 ADKDAISFGGGVPDPETFPRKELAEIAKEIIEK---------EYHYTLQYSTTEGDPVLKQQILKLLERMYGIT-GLDED 105 (420)
T ss_dssp TSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHH---------SHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCC-SCCGG
T ss_pred CCCCcEecCCcCCCCccCCHHHHHHHHHHHHhh---------CCccccCCCCCcCCHHHHHHHHHHHHHHhCCC-CCCHH
Confidence 34579999998653 3556666666554221 01245689999999999999999999987732 26899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC--C
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN--L 188 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~--~ 188 (464)
+|++|+|+++++.+++.+++++||.|++++|+|+.|...++.. |++++.++.++. .++++.+...+.+..... .
T Consensus 106 ~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~ 181 (420)
T d1vp4a_ 106 NLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY-LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIK 181 (420)
T ss_dssp GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGG
T ss_pred HeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHH-hhhccccccccc---ccccchhhhhhhhhHHHhhcc
Confidence 9999999999999999999999999999999999998888877 999999998743 468888887776543321 2
Q ss_pred c-eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 189 K-VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 189 ~-~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
+ ..+++++|||||||.+++.+++++|+++|+++++++|+||+|.++.|.+. ...+.... . ..+++++
T Consensus 182 ~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~--~~~~~~~~-~---------~~~~~i~ 249 (420)
T d1vp4a_ 182 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFKI-G---------GPERVVL 249 (420)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHHH-H---------CTTTEEE
T ss_pred ccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCc--cccccccc-c---------cccceeE
Confidence 3 44556789999999999999999999999999999999999999888765 33343332 1 3478999
Q ss_pred EcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGL 345 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 345 (464)
++|+||.++ +|+|+||++++++ +.+.+.+.... ..++.+.|.+++.++.+..+ .+++++.++.++++++.+.+.|
T Consensus 250 ~~s~sk~~~-~G~RiG~~~~~~~-~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L 326 (420)
T d1vp4a_ 250 LNTFSKVLA-PGLRIGMVAGSKE-FIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNAL 326 (420)
T ss_dssp EEESTTTTC-GGGCEEEEECCHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHH
T ss_pred Eeccccccc-cccccccccccch-hhhhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHHHhhhhcccchhhh
Confidence 999999885 9999999999554 44444433322 34678899888888887665 6778888888999999998888
Q ss_pred HhC-----CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCC--CCeEEEEeecCCHHHH
Q 037587 346 KVA-----GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNE--PGWFRICFANITEETL 418 (464)
Q Consensus 346 ~~~-----g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~--~~~~Ris~~~~~~e~l 418 (464)
++. |+++.+|+||+|+|++++...+... +++. +.++||.|.||+.|+..+ .+++|||++..+++++
T Consensus 327 ~~~~~~~~g~~~~~p~gg~f~~~~~~~~~d~~~------~~~~-l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l 399 (420)
T d1vp4a_ 327 EEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWE------MFEY-AKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKI 399 (420)
T ss_dssp HHHSTTSTTCEECCCSBSSEEEEECCTTCCTTT------THHH-HHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHH
T ss_pred hhhhccCCCcEEecCCceEEEEEECCCCCCHHH------HHHH-HHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHH
Confidence 775 7889999999999999987554432 4444 467899999999998643 5799999987788999
Q ss_pred HHHHHHHHHHHHhhCcccc
Q 037587 419 QVALQRIKVFAQSCNPQML 437 (464)
Q Consensus 419 ~~~l~~l~~~l~~~~~~~~ 437 (464)
++++++|+++++++..+++
T Consensus 400 ~~a~~rL~~~l~~~~~~~~ 418 (420)
T d1vp4a_ 400 VEGIKRLREVVLEYGKEKH 418 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHhhC
Confidence 9999999999998875554
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=1.4e-48 Score=389.41 Aligned_cols=362 Identities=16% Similarity=0.248 Sum_probs=285.8
Q ss_pred CceEEeeccccc---ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcE
Q 037587 36 SGIIQMGLAENQ---LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKL 112 (464)
Q Consensus 36 ~~~i~l~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i 112 (464)
+++|+|+.+.+. +|.+.+.+++.+.... ...+...|++..|.++||++||+++++.+| .++++++|
T Consensus 29 ~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~---------~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g--~~~~~~~I 97 (403)
T d1wsta1 29 SDVISLAGGLPAPETFPVETIKKIAVEVLEE---------HADKALQYGTTKGFTPLRLALARWMEKRYD--IPMSKVEI 97 (403)
T ss_dssp SSCEECCCCCCCGGGSCHHHHHHHHHHHHHH---------SHHHHHSCCCSSCCHHHHHHHHHHHHHHHC--CCCTTCEE
T ss_pred CCcEECCCCCCCccccCHHHHHHHHHHHHHh---------CcccccCCCCCcCCHHHHHHHHHHHHHHhC--CCCChHHe
Confidence 468999987543 3456666666654221 013456899999999999999999998887 45789999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh-cCCceE
Q 037587 113 VLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT-LNLKVK 191 (464)
Q Consensus 113 ~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~ 191 (464)
++|+|+++++..++.+++++||.|++++|+|+.+...+... |.+++.++.++.+. +...+......... ......
T Consensus 98 ~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 173 (403)
T d1wsta1 98 MTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYY-DPEFISIPLDDKGM---RVDLLEEKLEELRKQGKRVKI 173 (403)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETTEE---CHHHHHHHHHHHHHTTCCCCE
T ss_pred eecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhc-cccceeEeecccCC---ccccccccchhhhhccccccc
Confidence 99999999999999999999999999999999999988876 99999999875433 33333333322222 233556
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
++++++||||||.++|.+++++|+++|++|+++||+||+|.++.|++. +..++... +..+++++++||
T Consensus 174 ~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~--~~~~~~~~----------~~~~~~i~~~S~ 241 (403)
T d1wsta1 174 VYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGE--PTPPIKHF----------DDYGRVIYLGTF 241 (403)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGG----------CSSSCEEEEEES
T ss_pred cccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCC--CCCccccc----------CCCCcEEEEccc
Confidence 678899999999999999999999999999999999999999888766 43443322 144799999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC--
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-- 348 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 348 (464)
||.++ +|+|+||++++++.+........ .....+...|.+...++..... .+++++.++.++.+++.+.+.|.+.
T Consensus 242 SK~~~-~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~ 319 (403)
T d1wsta1 242 SKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYL-DEHIPKIIEFYKPRRDAMLEALEEYMP 319 (403)
T ss_dssp TTTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cceec-CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99996 99999999996554433333222 2245677888888888777665 7888999999999999999999875
Q ss_pred -CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHH
Q 037587 349 -GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETLQVALQRI 425 (464)
Q Consensus 349 -g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~l 425 (464)
|+.+..|+||+|+|++++...+... +++.+ .++||.|+||+.|+.. .++++||+++.++++++++++++|
T Consensus 320 ~~~~~~~p~gg~~~~~~~~~~~~~~~------~~~~l-~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl 392 (403)
T d1wsta1 320 EGVEWTKPEGGMFVRVTLPEGIDTKL------MMERA-VAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRL 392 (403)
T ss_dssp TTCEECCCSBSSEEEEECCTTCCTTT------THHHH-HHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHH
T ss_pred CCeEEeCCCceeEEEEECCCCCCHHH------HHHHH-HHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHH
Confidence 7888899999999999997655432 44554 5779999999998753 467999999877899999999999
Q ss_pred HHHHHhhC
Q 037587 426 KVFAQSCN 433 (464)
Q Consensus 426 ~~~l~~~~ 433 (464)
+++++++.
T Consensus 393 ~~~l~~~~ 400 (403)
T d1wsta1 393 AETIKEEM 400 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998653
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.2e-49 Score=390.77 Aligned_cols=350 Identities=21% Similarity=0.324 Sum_probs=285.3
Q ss_pred CCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEE
Q 037587 35 PSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLV 113 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~ 113 (464)
+.++|+|+.|++.++ ++.+.+++.+. ..+...|++..|.++||++||+++.+.+| +.+++++|+
T Consensus 27 g~~vi~l~~G~p~~~~p~~~~~al~~~-------------~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~ 91 (389)
T d2gb3a1 27 GVRIHHLNIGQPDLKTPEVFFERIYEN-------------KPEVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVL 91 (389)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHHHHT-------------CCSSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHhc-------------CCCCCCCCCCcCCHHHHHHHHHHHHHhcC--CCcccceEE
Confidence 467899999999886 45566666543 24567899999999999999999998876 567899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEE
Q 037587 114 LTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGV 193 (464)
Q Consensus 114 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v 193 (464)
+|+|+++++..++.+++++||.|++++|+|+.+...+... |+.++.++.+.++. ..+.+.+...+ .++++++
T Consensus 92 it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~ 163 (389)
T d2gb3a1 92 VTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA-GVKLIPVTRRMEEG-FAIPQNLESFI------NERTKGI 163 (389)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH-TCEEEEEECCGGGT-SCCCTTGGGGC------CTTEEEE
T ss_pred ecccccccccccccccccCCCeEEEeCCCCcccccccccc-Cccccccccccccc-cchhhhhhhhc------ccCccEE
Confidence 9999999999999999999999999999999999888877 99999998865433 33334444333 3488999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 194 LITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 194 il~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+++|||||||.++|.+++++|+++|++++++||+||+|.++.+.+. . .+.... ..++++++.|+||
T Consensus 164 ~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~-~~~~~~-----------~~~~~~v~~s~sK 229 (389)
T d2gb3a1 164 VLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE--F-ASALSI-----------ESDKVVVIDSVSK 229 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--C-CCGGGS-----------CCTTEEEEEESTT
T ss_pred EeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccc--c-cccccc-----------ccccccccccccc
Confidence 9999999999999999999999999999999999999998877654 2 232222 3478999999999
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhcc-cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-e
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSS-FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI-R 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~ 351 (464)
.++++|+|+||++++++.+......... ....+.+.|.++..++... +++++.+++.++++++.+.+.|+++|+ .
T Consensus 230 ~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 306 (389)
T d2gb3a1 230 KFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKR 306 (389)
T ss_dssp TTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cccCcccceeeeeccchhHHHHHhhhhhcccccccccccccccccccc---chhcccccccccccchhhhhhhhhhcccc
Confidence 9999999999999988777665544433 3445667777777777654 457888899999999999999999975 5
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHh-----cCeEEeCCCCCCCC---CCCeEEEEeecCCHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFE-----VGLNISPGSSCHCN---EPGWFRICFANITEETLQVALQ 423 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~-----~gI~v~pg~~f~~~---~~~~~Ris~~~~~~e~l~~~l~ 423 (464)
+..+++|+|+|+++|.. +..+++..++++ +||.|.||+.|+.. +.+|+||+++ .++++++++++
T Consensus 307 ~~~p~~g~~~~~~lp~~-------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~-~~~~~l~~a~~ 378 (389)
T d2gb3a1 307 FTKPSGAFYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAID 378 (389)
T ss_dssp BCCCSBSSEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHH
T ss_pred ccCCCceEEEEEeCCCC-------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc-CCHHHHHHHHH
Confidence 67789999999999742 123577888765 47899999988753 3579999998 58999999999
Q ss_pred HHHHHHHhh
Q 037587 424 RIKVFAQSC 432 (464)
Q Consensus 424 ~l~~~l~~~ 432 (464)
+|++++++.
T Consensus 379 ~L~~~lk~f 387 (389)
T d2gb3a1 379 VLMEGLKMF 387 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=3.5e-48 Score=379.96 Aligned_cols=335 Identities=16% Similarity=0.233 Sum_probs=271.8
Q ss_pred CCCCceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCc
Q 037587 33 HNPSGIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNK 111 (464)
Q Consensus 33 ~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~ 111 (464)
.+|.++||||+|+|+++ ++.+.+++.+. ......||+. +..+||++||++++ +++++
T Consensus 19 ~~p~~~idls~~~np~~~p~~~~~a~~~~-------------~~~~~~Yp~~-~~~~Lr~aia~~~~--------v~~~~ 76 (355)
T d1lc5a_ 19 ISPDQLLDFSANINPLGMPVSVKRALIDN-------------LDCIERYPDA-DYFHLHQALARHHQ--------VPASW 76 (355)
T ss_dssp SCGGGSEECSSCCCTTCCCHHHHHHHHHT-------------GGGGGSCCCT-TCHHHHHHHHHHHT--------SCGGG
T ss_pred CChhheEEccCCCCCCCCCHHHHHHHHHH-------------HHHhccCCCC-ChHHHHHHHHHHhC--------CCHHH
Confidence 35668999999999995 46666666654 2456779765 55999999999986 78999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE
Q 037587 112 LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK 191 (464)
Q Consensus 112 i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 191 (464)
|++|+|+++++..++..+ .|+.+++..|+|+.|....... ++.++.++++.+++|.++. .+.+.+ .++++
T Consensus 77 I~~~~g~~~~~~~~~~~~--~~~~~~v~~p~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~~~~~~------~~~~~ 146 (355)
T d1lc5a_ 77 ILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQS-GCEIRRWSLREADGWQLTD-AILEAL------TPDLD 146 (355)
T ss_dssp EEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCT-THHHHC------CTTCC
T ss_pred EEecccHHHHHHHHHhhh--ccccccccCCccceeccccccc-cccceeeeeeccCCcccee-eeeecc------ccccc
Confidence 999999999999988776 4566677889998887777666 8999999998777787763 444433 34899
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCC
Q 037587 192 GVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSL 271 (464)
Q Consensus 192 ~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~ 271 (464)
+|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+... .... ... ..+++++++||
T Consensus 147 ~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~~---~~~---------~~~~~i~~~S~ 212 (355)
T d1lc5a_ 147 CLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFIP---ALK---------DNPHIWVLRSL 212 (355)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSGG---GCT---------TCTTEEEEEES
T ss_pred eeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecc--cccc---ccc---------ccccceeeccc
Confidence 999999999999999999999999999999999999999998655443 2111 222 34799999999
Q ss_pred CcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 037587 272 SKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI 350 (464)
Q Consensus 272 SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 350 (464)
||.||++|+|+||++++++.+.+.+++....+.++.++|.++..++++..+ +.+.++.++++++++.+.|.+. ++
T Consensus 213 SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (355)
T d1lc5a_ 213 TKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAW----QQATWHWLREEGARFYQALCQLPLL 288 (355)
T ss_dssp TTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHHH----HHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred ccccccccccccceeccchhhhHHHHhhcCCccccccccccccccccccch----hHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 999999999999999988877777777777777899999999999998654 6677888888999999999988 67
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
.+.++ +|+|+|++++.. .. +++..|+ ++||.|+||..|+...++|+||+++ +++++++++++|++++
T Consensus 289 ~~~p~-~~~f~~~~~~~~--~~------~~~~~L~-~~gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 289 TVYPG-RANYLLLRCERE--DI------DLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL 355 (355)
T ss_dssp EECCC-SSSEEEEEESCT--TC------CHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred EECCC-CCEEEEEECCCC--HH------HHHHHHH-HCCcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHHHHHHHhC
Confidence 77654 557999998742 11 3666665 6799999999998767899999997 6899999999999864
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.8e-49 Score=386.98 Aligned_cols=338 Identities=22% Similarity=0.371 Sum_probs=281.1
Q ss_pred ceEEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEe
Q 037587 37 GIIQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLT 115 (464)
Q Consensus 37 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it 115 (464)
++|||++|.+.++ ++.+.+++++. +.....|+++.|.++||++||++++ +++++|++|
T Consensus 26 ~~I~ls~g~p~~~~p~~i~~al~~~-------------l~~~~~Y~~~~G~~elr~aiA~~~~--------~~~~~Iiit 84 (368)
T d1v2da_ 26 GAVNLGQGFPSNPPPPFLLEAVRRA-------------LGRQDQYAPPAGLPALREALAEEFA--------VEPESVVVT 84 (368)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHH-------------TTTSCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEEE
T ss_pred CCEEecCCCCCCCCCHHHHHHHHHH-------------hhcccCCCCCcCCHHHHHHHHhhcc--------cCCcceeec
Confidence 6799999987765 46677777664 2345689999999999999999986 789999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC-CCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 116 AGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS-SNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 116 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
+|+++++..++.+++.+||.|++++|+|+.+...+... |.+++.++++. .+.+.+|++.+++.+.+ ++++++
T Consensus 85 ~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 157 (368)
T d1v2da_ 85 SGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLA-GAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALL 157 (368)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETTEEECCHHHHHTTCCT------TEEEEE
T ss_pred cchHHHHHHHhhccccccccccccCCcchhhhhHHHhc-CCccceeccccccccccCCHHHHHHhhcc------CceEEE
Confidence 99999999999999999999999999999999888877 99998888753 35688999999988754 788999
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
++|||||||.+++.+++++|+++|+++++++|+||+|..+.+... . ...... ..++++++.|+||.
T Consensus 158 ~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~--~-~~~~~~-----------~~~~~~~~~~~sk~ 223 (368)
T d1v2da_ 158 LNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER--P-RRLREF-----------APERTFTVGSAGKR 223 (368)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC--C-CCHHHH-----------CTTTEEEEEEHHHH
T ss_pred EcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccc--c-cccccc-----------cccccceeeccccc
Confidence 999999999999999999999999999999999999987544433 1 222112 33678889999999
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHhc-ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKMS-SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL 353 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 353 (464)
++++|+|+||++++++.+....+... ....++.+.|.++..++..... .+++++.++.++++++.+.+.|+++|+++.
T Consensus 224 ~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 302 (368)
T d1v2da_ 224 LEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRVY 302 (368)
T ss_dssp TTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccccccccccccccccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhcCcEEe
Confidence 99999999999997665444333222 2235778899988888877665 667899999999999999999999999999
Q ss_pred cCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 354 KSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCN--EPGWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 354 ~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
+|++|+|+|++++.. + ..++++++||.++||+.|+.. .++++|||++. ++|++++++++|++++
T Consensus 303 ~p~g~~~~~~~l~~~----~-------~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~-~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 303 VPEGTYFLMAELPGW----D-------AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVV 368 (368)
T ss_dssp CCSBSSEEEEECTTC----C-------HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred cCCceeEEEEeCCcc----H-------HHHHHHhCCEEEEechhhCCCCCCCCEEEEEecC-CHHHHHHHHHHHHHhC
Confidence 999999999999742 1 234677899999999999753 46899999984 8999999999999874
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-46 Score=365.61 Aligned_cols=333 Identities=18% Similarity=0.326 Sum_probs=260.8
Q ss_pred hcCCCCCCC--CCCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 25 ENNPYDQLH--NPSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 25 ~~~~y~~~~--~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
.-.+|.+.+ ...+.|+|+.||||++++. +.. -+.+++||++.+ .+||++||++++
T Consensus 14 ~~~~y~~~~~~~~~~~i~L~~ne~p~~~~~------~~~------------~~~l~rYPd~~~-~~Lr~~ia~~~g---- 70 (354)
T d1fg7a_ 14 NLTPYQSARRLGGNGDVWLNANEYPTAVEF------QLT------------QQTLNRYPECQP-KAVIENYAQYAG---- 70 (354)
T ss_dssp HCCCCCCCCCCTTTCSEECSSCCCSSCCCC------CCC------------CCCTTSCCCSSC-HHHHHHHHHHHT----
T ss_pred cCCCCCchhhcCCCCCEEeeCCCCCCCCCH------HHH------------HHHHhcCCCCcH-HHHHHHHHHHhC----
Confidence 344565533 2356799999999986531 100 134678988754 899999999986
Q ss_pred CCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC-eEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHH
Q 037587 103 NKVKFDPNKLVLTAGSTAANETLMFCLADPGD-AFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQ 181 (464)
Q Consensus 103 ~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd-~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 181 (464)
+++++|++|+|++++|..+++++++||| .|+++.|+|..|...+... |.+++.++++ ++|.+|+++++..+
T Consensus 71 ----v~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~-g~~v~~~~~~--~~~~~d~~~l~~~~- 142 (354)
T d1fg7a_ 71 ----VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVECRTVPTL--DNWQLDLQGISDKL- 142 (354)
T ss_dssp ----SCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH-TCEEEECCCC--TTSCCCHHHHHTSC-
T ss_pred ----CChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhhcc-Cceeeccccc--cccccchhhhhhcc-
Confidence 7899999999999999999999999998 5889999999998888877 9999988875 47899999988754
Q ss_pred HHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCC
Q 037587 182 QAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDL 261 (464)
Q Consensus 182 ~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (464)
.++++|+++|||||||.+++.++++.+.+.++ ++.++|+||+|.++.+... . .. ... .
T Consensus 143 ------~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~--~-~~---~~~---------~ 200 (354)
T d1fg7a_ 143 ------DGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS--L-AG---WLA---------E 200 (354)
T ss_dssp ------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC--S-GG---GTT---------T
T ss_pred ------cccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccccc--c-ch---hhc---------c
Confidence 27899999999999999999999999988776 5677888888887543322 1 11 222 4
Q ss_pred CCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHH
Q 037587 262 WSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341 (464)
Q Consensus 262 ~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 341 (464)
.+++++++||||.||++|+|+||++++ +.+.+.+.+....+.++.+.|.++..++.+..+ .+.....+.+.++++.+
T Consensus 201 ~~~~iv~~S~SK~~~laGlRiGy~i~~-~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~r~~l 277 (354)
T d1fg7a_ 201 YPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYL 277 (354)
T ss_dssp CTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHH
T ss_pred cccceEEeCCccccCCCcccccccccc-chhhhhhhhhcCccchhhHHHHHHHHHHhhhcc--ccccccchhhhhHHHHH
Confidence 488999999999999999999999995 455566677777777888888888888776553 34555667788888999
Q ss_pred HHHHHhCC-CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHH
Q 037587 342 VSGLKVAG-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQV 420 (464)
Q Consensus 342 ~~~l~~~g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 420 (464)
.+.+.+.+ +....+.+++|+|++++. ..++++.|+ ++||+|++++.|. ..++|+|||++ +++++++
T Consensus 278 ~~~l~~~~~~~~~~p~~~~f~~~~~~~---------~~~~~~~L~-~~gIlvr~~~~~~-~~~~~lRisig--t~ee~~~ 344 (354)
T d1fg7a_ 278 IAALKEIPCVEQVFDSETNYILARFKA---------SSAVFKSLW-DQGIILRDQNKQP-SLSGCLRITVG--TREESQR 344 (354)
T ss_dssp HHHHHHSTTEEEECCCSSSEEEEEETT---------HHHHHHHHH-HTTEECEECTTST-TCTTEEEEECC--CHHHHHH
T ss_pred HHHHHhCCCcceeCCCCceEEEEeCCC---------HHHHHHHHH-HCCcEEecCCCCC-CCCCEEEEEeC--CHHHHHH
Confidence 99999985 444445566799999873 124666665 6799999998875 34789999998 6888888
Q ss_pred HHHHHH
Q 037587 421 ALQRIK 426 (464)
Q Consensus 421 ~l~~l~ 426 (464)
++++|+
T Consensus 345 ~l~aLk 350 (354)
T d1fg7a_ 345 VIDALR 350 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888775
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=3e-46 Score=372.13 Aligned_cols=345 Identities=14% Similarity=0.177 Sum_probs=273.2
Q ss_pred ceEEeeccc----cc--ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 37 GIIQMGLAE----NQ--LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 37 ~~i~l~~~~----n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
+.|||+.|. +. ..++.++++....... ...+.|.+..|.++||+++++++.+.++ ..++++
T Consensus 29 ~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~ 95 (401)
T d7aata_ 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK-----------KMDKEYLPIAGLADFTRASAELALGENS--EAFKSG 95 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhC-----------CCCCCCCCCCCCHHHHHHHHHHHhccCC--cccCcC
Confidence 459999983 22 2346777776654321 2335799999999999999999986554 335677
Q ss_pred cEEEeCChH-----HHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhh
Q 037587 111 KLVLTAGST-----AANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQT 185 (464)
Q Consensus 111 ~i~it~G~~-----~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 185 (464)
+|+++.|+. +++..+++++++|||.|++++|+|+.|...+... |++++.+|+.++++|..+++.+.+.+..
T Consensus 96 ~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (401)
T d7aata_ 96 RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-GLQLQAYRYYDPKTCSLDFTGAMEDISK--- 171 (401)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTT---
T ss_pred ceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHc-CCeEEEEeccccccccccHHHHHHHHhc---
Confidence 777665543 5788888899999999999999999999999877 9999999998778889999988887653
Q ss_pred cCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccch--hhhhhccCcCCCCCCCC
Q 037587 186 LNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISI--MEAVMDRNIDESDDLWS 263 (464)
Q Consensus 186 ~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~ 263 (464)
..++++++++++||||||.++|.+++++|+++|++++++||+||+|.++.|++. ...+. ..... ..+
T Consensus 172 ~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~~~~~---------~~~ 240 (401)
T d7aata_ 172 IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDI--NRDAWALRHFIE---------QGI 240 (401)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCH--HHHTHHHHHHHH---------TTC
T ss_pred CCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCc--ccchhhhhhhhh---------hhc
Confidence 245788999999999999999999999999999999999999999999888754 21121 11222 336
Q ss_pred cEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH--------HhcccCCCChHHHHHHHHHcCCchhh---HHHHHHHHH
Q 037587 264 RIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT--------KMSSFGLVSSQTQYLLSRMLSDKKFT---CNYMKENRK 332 (464)
Q Consensus 264 ~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~--------~~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~ 332 (464)
+++++.|+||.++++|+|+||++++...+....+ ....+...+.+.|.++..++.++.+. .++++..++
T Consensus 241 ~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (401)
T d7aata_ 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD 320 (401)
T ss_dssp CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999987654332211 11233457788999999999987652 456677888
Q ss_pred HHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 037587 333 RLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRI 408 (464)
Q Consensus 333 ~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ri 408 (464)
.++++|+.+.+.|++++ +.+.++++|||+|+.++. +++.+|++++||.+.|| .||
T Consensus 321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~gV~~~pg----------~Ri 379 (401)
T d7aata_ 321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRI 379 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCCH-----------HHHHHHHHhCCEEECCC----------cEE
Confidence 89999999999999985 456678999999987752 46788999999999987 399
Q ss_pred EeecCCHHHHHHHHHHHHHHHH
Q 037587 409 CFANITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 409 s~~~~~~e~l~~~l~~l~~~l~ 430 (464)
+++.+++++++.+.++|.++++
T Consensus 380 s~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 380 SVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHC
T ss_pred EeccCCHHHHHHHHHHHHHHhC
Confidence 9988899999999999998763
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.6e-44 Score=347.46 Aligned_cols=320 Identities=18% Similarity=0.230 Sum_probs=248.6
Q ss_pred CCCCCCceEEeecccccccH-HHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCC
Q 037587 31 QLHNPSGIIQMGLAENQLSF-DLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDP 109 (464)
Q Consensus 31 ~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 109 (464)
......++|+|++||||+++ +.+.+++.+... ......| +..|.++||++||+++++. .+++
T Consensus 14 ~~~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~-----------~~~~~~y-p~~g~~~Lr~aia~~~~~~-----~v~~ 76 (334)
T d2f8ja1 14 YETEKRDKTYLALNENPFPFPEDLVDEVFRRLN-----------SDALRIY-YDSPDEELIEKILSYLDTD-----FLSK 76 (334)
T ss_dssp CCCCCCCSEECSSCCCSSCCCHHHHHHHHHHCC-----------TTGGGSC-CCSSCHHHHHHHHHHHTCS-----SCCG
T ss_pred ccccCCCceEEECCCCCCCCCHHHHHHHHHHhh-----------cchhcCC-CCCCcHHHHHHHHHHhccc-----CCCc
Confidence 33456689999999999874 445555444311 1233445 4568999999999999743 2689
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 110 NKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 110 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
++|++|+|++++|+++++ +||+|++++|+|+.|...+... |++++.+|++++.. .+ +. ...+
T Consensus 77 d~I~it~G~~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~--~~-~~----------~~~~ 138 (334)
T d2f8ja1 77 NNVSVGNGADEIIYVMML----MFDRSVFFPPTYSCYRIFAKAV-GAKFLEVPLTKDLR--IP-EV----------NVGE 138 (334)
T ss_dssp GGEEEEEHHHHHHHHHHH----HSSEEEECSSCCHHHHHHHHHH-TCCEEECCCCTTSC--CC-CC----------CCCT
T ss_pred ceEEecCcchhHHHHHhh----hccccccccccccccccchhcc-CCcccccccccccc--cc-cc----------cccc
Confidence 999999999999988765 4699999999999999888877 99999999875432 21 11 1237
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
+++++++|||||||.+++.++++++ .++++++|+||+|.++.+... . .. .. ..+++++++
T Consensus 139 ~~~l~l~nP~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~--~-~~----~~---------~~~~~i~~~ 198 (334)
T d2f8ja1 139 GDVVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESY--V-DF----LK---------KYENLAVIR 198 (334)
T ss_dssp TEEEEEESSCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCC--G-GG----GG---------TCSSEEEEE
T ss_pred ceEEEecccccccceeecHHHhhcc----ccceeEEeecccchhhccccc--c-cc----cc---------cCceEEEEe
Confidence 7899999999999999998877653 457899999999986433222 1 11 11 347999999
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG 349 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 349 (464)
||||+++++|+|+||+++ ++.+...+......+.++.++|.++.+++.+.++ +++.++.++++++.+.+.|+++|
T Consensus 199 S~SK~~~~~G~R~G~~~~-~~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g 273 (334)
T d2f8ja1 199 TFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREI----FEERTKFIVEERERMKSALREMG 273 (334)
T ss_dssp ESTTTSSCTTTCEEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHHH----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCccccchhhhhhhhccc-chHHHHHHHHhhcccccchhhhhhcccccccccc----hhhHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999 5556666777777777899999999999887554 77778889999999999999999
Q ss_pred CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHH
Q 037587 350 IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVF 428 (464)
Q Consensus 350 ~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 428 (464)
+++.+++|+ |+|+.++. .+..++++.|+ ++||.|+++ ++|+|||++ +++++++++++|+++
T Consensus 274 ~~~~~~~g~-f~~~~~~~-------~~~~~~~~~L~-~~GI~vr~~-------~~~vRis~g--~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 274 YRITDSRGN-FVFVFMEK-------EEKERLLEHLR-TKNVAVRSF-------REGVRITIG--KREENDMILRELEVF 334 (334)
T ss_dssp CEECCCCSS-EEEEECCH-------HHHHHHHHHHH-HTTEECEEE-------TTEEEEECC--CHHHHHHHHHHHHHC
T ss_pred CeECCCCce-EEEEECCC-------CCHHHHHHHHH-HCCCEECCC-------CCeEEEEcC--CHHHHHHHHHHHhcC
Confidence 999998887 88998874 23345666665 679999853 478999998 688899999988763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=1.2e-43 Score=354.16 Aligned_cols=358 Identities=15% Similarity=0.166 Sum_probs=268.9
Q ss_pred CCCCCCCCceEEeeccc----cc--ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 29 YDQLHNPSGIIQMGLAE----NQ--LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~----n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
|..+.+|. .|||+++. +. ..++.++++.+..... ....+.|++..|.++||+++++++.+..+
T Consensus 23 ~~~d~~~~-kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~----------~~~~~~Y~p~~G~~~lr~aia~~~~~~~~ 91 (412)
T d1yaaa_ 23 YGQDQRAT-KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND----------SSYNHEYLGITGLPSLTSNAAKIIFGTQS 91 (412)
T ss_dssp HHTCCCSS-CEECSSCCCBCTTSCBCCCHHHHHHHHHHHTC----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred HhcCCCCC-cEEeecCCCcCCCCCCCCcHHHHHHHHHHHhC----------cccCCCCCCCCCCHHHHHHHHHHHhcccC
Confidence 34444444 59999972 22 2246777765543110 13346799999999999999999976544
Q ss_pred CCCCCCCCcEEE--eCChHHHHHHHH--HHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHH
Q 037587 103 NKVKFDPNKLVL--TAGSTAANETLM--FCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALEN 178 (464)
Q Consensus 103 ~~~~~~~~~i~i--t~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 178 (464)
....++.+++ +.|+..++..++ ..++.+||.|++++|+|+.|...+... |++++.+++..++++.++.+.+.+
T Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 168 (412)
T d1yaaa_ 92 --DALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLN 168 (412)
T ss_dssp --HHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTT-TCCEEEEECEETTTTEECHHHHHH
T ss_pred --ccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHc-CCceecccccccccccccchhhhc
Confidence 1123333332 344555544443 345789999999999999999999877 999999998877888899998888
Q ss_pred HHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchh--hhhhccCcC
Q 037587 179 AYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIM--EAVMDRNID 256 (464)
Q Consensus 179 ~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~--~l~~~~~~~ 256 (464)
.+.. ..++.+++++++||||||.++|.+++++|+++|+++++++|+||+|.++.|++. ...+.. .....
T Consensus 169 ~~~~---~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~~~~~~---- 239 (412)
T d1yaaa_ 169 AIQK---APEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDL--DKDAYAVRLGVEK---- 239 (412)
T ss_dssp HHHH---SCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCH--HHHTHHHHHHHHH----
T ss_pred cccc---CCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCc--ccchhhhhhhhhc----
Confidence 8764 234677889999999999999999999999999999999999999999888654 111211 11111
Q ss_pred CCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH------HHHH----H--HhcccCCCChHHHHHHHHHcCCchhh-
Q 037587 257 ESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV------VSAA----T--KMSSFGLVSSQTQYLLSRMLSDKKFT- 323 (464)
Q Consensus 257 ~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~------~~~~----~--~~~~~~~~s~~~q~~~~~~l~~~~~~- 323 (464)
.+..++++++.||||.|+++|+|+||++++++.+ ...+ . ....+.+++.+.|.++..++.++.+.
T Consensus 240 --~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 317 (412)
T d1yaaa_ 240 --LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTE 317 (412)
T ss_dssp --TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHH
T ss_pred --cccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHH
Confidence 1245789999999999999999999999865321 1111 1 12234567889999999999987542
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCC
Q 037587 324 --CNYMKENRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397 (464)
Q Consensus 324 --~~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~ 397 (464)
.++++.+++.++++|+.+.+.|+++| +.+.++++|||+|+.++. +++++|++++||++.||+
T Consensus 318 ~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~-----------e~~~~L~~e~~V~~~~g~- 385 (412)
T d1yaaa_ 318 QWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVASG- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcCH-----------HHHHHHHHhCCEEECCCC-
Confidence 45677788999999999999999885 456788999999987752 478889999999998763
Q ss_pred CCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 398 CHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 398 f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
||+++.++++.++.+.++|+++++.+
T Consensus 386 ---------Ris~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 386 ---------RASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp ---------EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred ---------EEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 99998788899999999999998764
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=5e-43 Score=349.97 Aligned_cols=351 Identities=14% Similarity=0.133 Sum_probs=262.2
Q ss_pred ceEEeeccc--c----cccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 37 GIIQMGLAE--N----QLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 37 ~~i~l~~~~--n----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
+.|||+++. + +..++.++++.+..... -...+.|.+..|.++||+++++++.+..+ ..+.++
T Consensus 31 ~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~----------~~~~~~Y~p~~G~p~lreaia~~~~~~~~--~~~~~~ 98 (412)
T d1ajsa_ 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----------SSLNHEYLPILGLAEFRTCASRLALGDDS--PALQEK 98 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhC----------CCcCCCCCCCCCCHHHHHHHHHHHhccCC--cccccc
Confidence 459999983 1 12346677765543211 12345799999999999999999976544 224455
Q ss_pred cE--EEeCChHHHHHHHHHH-------hcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEe-cCCCCCcccCHHHHHHHH
Q 037587 111 KL--VLTAGSTAANETLMFC-------LADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH-CSSSNGFRITISALENAY 180 (464)
Q Consensus 111 ~i--~it~G~~~al~~~~~~-------l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~-~~~~~~~~~d~~~l~~~i 180 (464)
++ +.|.|.+.++..+..+ +++|||.|++++|+|+.|...+... |++.+.++ ...++.+..|.+.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~-G~~~v~~~~~~~~~~~~~d~~~~~~~~ 177 (412)
T d1ajsa_ 99 RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA-GFKDIRSYRYWDTEKRGLDLQGFLSDL 177 (412)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT-TCSCEEEEECEETTTTEECHHHHHHHH
T ss_pred cceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHc-CCeEEEeecccccccccccHHHHHHHH
Confidence 54 4455555555544433 4799999999999999999999887 88765544 444566778888888776
Q ss_pred HHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCC
Q 037587 181 QQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDD 260 (464)
Q Consensus 181 ~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 260 (464)
.. ..++++++++++||||||.++|.+++++|+++|++|+++||+||+|.++.|++......+......
T Consensus 178 ~~---~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~--------- 245 (412)
T d1ajsa_ 178 EN---APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS--------- 245 (412)
T ss_dssp HH---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH---------
T ss_pred Hh---ccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhh---------
Confidence 54 245788899999999999999999999999999999999999999999887653101112222222
Q ss_pred CCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH--------HhcccCCCChHHHHHHHHHcCCchh---hHHHHHH
Q 037587 261 LWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT--------KMSSFGLVSSQTQYLLSRMLSDKKF---TCNYMKE 329 (464)
Q Consensus 261 ~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~--------~~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~ 329 (464)
..++++++.|+||.++++|+|+||++++...+....+ ....+...+...|.++..++.+..+ ..++++.
T Consensus 246 ~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (412)
T d1ajsa_ 246 EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKT 325 (412)
T ss_dssp TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred hcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3478888999999999999999999986543322111 1123445677899999998887654 2456777
Q ss_pred HHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 037587 330 NRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGW 405 (464)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 405 (464)
+++.++++|+.+.+.|++++ +.++++++|||.|+.++. +++.+|++++||++.||+
T Consensus 326 ~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~-----------~~v~~L~~e~gV~~vpg~--------- 385 (412)
T d1ajsa_ 326 MADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLPSG--------- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTS---------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCCH-----------HHHHHHHHhCCEEEeCCC---------
Confidence 88899999999999999985 345678899999987642 467788899999999873
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHhhC
Q 037587 406 FRICFANITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 406 ~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 433 (464)
||+++.+++++++.++++|++++++.|
T Consensus 386 -Ri~~ag~~~~~i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 386 -RINMCGLTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp -EEEGGGCCTTTHHHHHHHHHHHHHHCC
T ss_pred -eEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 999987789999999999999999865
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-43 Score=350.66 Aligned_cols=352 Identities=15% Similarity=0.191 Sum_probs=263.3
Q ss_pred CCCCCCCCceEEeeccc----cc--ccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 29 YDQLHNPSGIIQMGLAE----NQ--LSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~~----n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
|..+.++ +.|||+++. +. ..++.++++.....+. ...+.|++..|.++||+++++++.+.++
T Consensus 20 ~~~d~~~-~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~-----------~~~~~Y~p~~G~~~lR~aia~~~~~~~~ 87 (396)
T d2q7wa1 20 FRADERP-GKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-----------ETTKNYLGIDGIPEFGRCTQELLFGKGS 87 (396)
T ss_dssp ---------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred HhccCCC-CcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhC-----------CCCCCCCCCcCCHHHHHHHHHHHHhhcC
Confidence 4444444 458999982 22 2246777776654321 3345799999999999999999986554
Q ss_pred CCCCCCCCc--EEEeCChHHHHHHHHH--HhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHH
Q 037587 103 NKVKFDPNK--LVLTAGSTAANETLMF--CLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALEN 178 (464)
Q Consensus 103 ~~~~~~~~~--i~it~G~~~al~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 178 (464)
..+.++. +++|.|++.++.+++. +.+.+||.|++++|+|+.|...+... |++++.+++..++++..+...+.+
T Consensus 88 --~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 164 (396)
T d2q7wa1 88 --ALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALIN 164 (396)
T ss_dssp --HHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHT-TCEEEEEECEETTTTEECHHHHHH
T ss_pred --CcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHc-CCeeEecccccccccccccchHHH
Confidence 2233443 4467777666655544 44789999999999999999998877 999999999877777778777776
Q ss_pred HHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCC
Q 037587 179 AYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDES 258 (464)
Q Consensus 179 ~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~ 258 (464)
.... ...+++++++++||||||.++|.+++++|+++|++++++||+||+|.++.|++. ...+......+
T Consensus 165 ~~~~---~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~~~~------ 233 (396)
T d2q7wa1 165 SLNE---AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE--EDAEGLRAFAA------ 233 (396)
T ss_dssp HHTT---CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH--HHTHHHHHHHH------
T ss_pred HHHH---hccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCc--cCchHhhhhhh------
Confidence 6543 345778889999999999999999999999999999999999999999887654 22222222222
Q ss_pred CCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH--------HhcccCCCChHHHHHHHHHcCCchh---hHHHH
Q 037587 259 DDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT--------KMSSFGLVSSQTQYLLSRMLSDKKF---TCNYM 327 (464)
Q Consensus 259 ~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~--------~~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~ 327 (464)
..++++++.|+||.++++|+|+||++++...+..... ....+.+.+...|.++..++.+... ..+++
T Consensus 234 --~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 311 (396)
T d2q7wa1 234 --MHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQEL 311 (396)
T ss_dssp --HCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred --hcccccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHH
Confidence 2368888999999999999999999997654332211 1223445677888888888887543 25677
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 037587 328 KENRKRLRKRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEP 403 (464)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~ 403 (464)
++.++.++++++.+.+.|+++| +.+..+++|+|.|+.++. +++.+|++++||++.||+
T Consensus 312 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~-----------e~~~~L~~e~gV~~~~g~------- 373 (396)
T d2q7wa1 312 TDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVASG------- 373 (396)
T ss_dssp HHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCCH-----------HHHHHHHHhCCEEECCCC-------
Confidence 7888999999999999999986 445577889999988763 467889999999998864
Q ss_pred CeEEEEeecCCHHHHHHHHHHHHHHH
Q 037587 404 GWFRICFANITEETLQVALQRIKVFA 429 (464)
Q Consensus 404 ~~~Ris~~~~~~e~l~~~l~~l~~~l 429 (464)
||+++.+++++++.++++|++++
T Consensus 374 ---Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 374 ---RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp ---EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred ---EEEecCCCHHHHHHHHHHHHHhC
Confidence 99998888999999999998864
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-45 Score=362.21 Aligned_cols=346 Identities=14% Similarity=0.167 Sum_probs=267.5
Q ss_pred ceEEeeccc---cc--cc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 37 GIIQMGLAE---NQ--LS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 37 ~~i~l~~~~---n~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
+.|||+++. +. .| ++.++++....... -.....|++..|.++||+++|+++.+.++ ..++++
T Consensus 27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~----------~~~~~~Y~p~~G~~~lR~aia~~~~~~~~--~~~~~~ 94 (397)
T d3tata_ 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ----------PHGASLYLPMEGLNCYRHAIAPLLFGADH--PVLKQQ 94 (397)
T ss_dssp SCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTS----------CCSSBCCCCTTCCHHHHHHHHHHHTCSSC--HHHHTT
T ss_pred CcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhC----------cccCCCCCCcccCHHHHHHHHHHHhhccC--CcCCcC
Confidence 349999983 22 12 46677775543111 13345799999999999999999986554 345788
Q ss_pred cEEEeCChHHH----HHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 111 KLVLTAGSTAA----NETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 111 ~i~it~G~~~a----l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
+|+++.|++++ +.+++..++.|||.|++++|+|+.|...++.. |.+++.+|++.++++..+.+.+.+.+.. .
T Consensus 95 ~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~-G~~~~~v~~~~~~~~~~~~~~~~~~~~~---~ 170 (397)
T d3tata_ 95 RVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA-GFEVSTYPWYDEATNGVRFNDLLATLKT---L 170 (397)
T ss_dssp CEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTT-TCCCEECCCCCTTTSSCCHHHHHHHHTT---C
T ss_pred cEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHc-CCEEEEEecchhhccccchHHHHHHhhh---c
Confidence 89888877764 56666677899999999999999999999877 9999999998888888898888777643 2
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
.+++++++++|||||||.++|.+++++|+++|+++++++|+||+|.++.|++. ...+....... ..++++
T Consensus 171 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~~~~--------~~~~~i 240 (397)
T d3tata_ 171 PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGME--EDAYAIRAIAS--------AGLPAL 240 (397)
T ss_dssp CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHH--HHHHHHHHHHT--------TTCCCE
T ss_pred ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCc--ccchhhhhhhh--------cCCceE
Confidence 44778889999999999999999999999999999999999999999888643 22222222221 346899
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHH------HHH--hcccCCCChHHHHHHHHHcCCchhh---HHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSA------ATK--MSSFGLVSSQTQYLLSRMLSDKKFT---CNYMKENRKRLR 335 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~------~~~--~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~ 335 (464)
++.||||.++++|+|+||++++...+... ... .....+.+...|.++..++.+..+. .++++..+++++
T Consensus 241 ~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d3tata_ 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRIL 320 (397)
T ss_dssp ECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999865432211 111 1223446678999998888886553 345556677888
Q ss_pred HHHHHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEee
Q 037587 336 KRKEMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFA 411 (464)
Q Consensus 336 ~~~~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~ 411 (464)
++++.+.+.|...+ +.+.++++|||+|+.++. +++.+|++++||.+.||. ||+++
T Consensus 321 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~~V~l~~g~----------Ri~~a 379 (397)
T d3tata_ 321 AMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVA 379 (397)
T ss_dssp HHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCH-----------HHHHHHTTTTCEECCSSS----------CCBTT
T ss_pred HHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcCH-----------HHHHHHHHhCCEEeCCCC----------EEEec
Confidence 88888999888763 667788999999998863 467888899999999873 99998
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 037587 412 NITEETLQVALQRIKVFA 429 (464)
Q Consensus 412 ~~~~e~l~~~l~~l~~~l 429 (464)
.+++++++.+.++|++++
T Consensus 380 ~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 380 GLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp SCCTTTHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 888999999999998764
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=9.7e-42 Score=338.65 Aligned_cols=344 Identities=14% Similarity=0.174 Sum_probs=261.3
Q ss_pred ceEEeeccc------ccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 37 GIIQMGLAE------NQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 37 ~~i~l~~~~------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
+.|||+++. ++.+++.++++++...+. ...+.|.+..|.++||+++++++.+..+. ....+
T Consensus 27 ~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~-----------~~~~~Y~p~~G~~~lr~aia~~~~~~~~~--~~~~~ 93 (394)
T d2ay1a_ 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-----------ETTKTYAGLSGEPEFQKAMGELILGDGLK--SETTA 93 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH-----------CCCCCCCCSSCCHHHHHHHHHHHHGGGCC--GGGEE
T ss_pred CCEEccCCCccCCCCCCCCCHHHHHHHHHHhhC-----------CCCCCCCCCCCCHHHHHHHHHHHhccccc--ccccc
Confidence 459999983 233457788887665321 23457999999999999999999865541 12233
Q ss_pred cEEEeCC-hHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCc
Q 037587 111 KLVLTAG-STAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLK 189 (464)
Q Consensus 111 ~i~it~G-~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 189 (464)
.+++++| +..++...+..+.++||.|++++|+|+.|...++.. |.+++.+++..++.+..+.+.+++.... ..++
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 169 (394)
T d2ay1a_ 94 TLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAA---AKKG 169 (394)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH-TCCEEEEECEETTTTEECHHHHHHHHHT---CCTT
T ss_pred ceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHc-CCEEEEecccchhcccccchhHHHHHhh---cccC
Confidence 3443333 344466666778899999999999999999999887 9999999987777777787777776543 2346
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEc
Q 037587 190 VKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVY 269 (464)
Q Consensus 190 ~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~ 269 (464)
.+++++++||||||.++|.+++++|+++|++++++||+||+|.++.|++. ...+....... ...+++++.
T Consensus 170 ~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~~~~--------~~~~~~~~~ 239 (394)
T d2ay1a_ 170 DMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE--EDAAGTRLIAS--------RIPEVLIAA 239 (394)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH--HHHHHHHHHHH--------HCSSEEEEE
T ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhccccc--ccchhhhhhhh--------hcccccccc
Confidence 77788899999999999999999999999999999999999999887654 22232222211 225788899
Q ss_pred CCCcCCCCCccEEEEEEecCHHHHHHHH--------HhcccCCCChHHHHHHHHHcCCchh---hHHHHHHHHHHHHHHH
Q 037587 270 SLSKDFSMPGFRVGMIYSNNERVVSAAT--------KMSSFGLVSSQTQYLLSRMLSDKKF---TCNYMKENRKRLRKRK 338 (464)
Q Consensus 270 S~SK~~g~~GlRiG~l~~~~~~~~~~~~--------~~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 338 (464)
|+||.++++|+|+||++++...+....+ ........+...|.++..++.++.+ ..++++.+++++++++
T Consensus 240 s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r 319 (394)
T d2ay1a_ 240 SCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLR 319 (394)
T ss_dssp ECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986544332211 1122334666888888888887654 2466677888999999
Q ss_pred HHHHHHHHhCC----CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeecCC
Q 037587 339 EMLVSGLKVAG----IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFANIT 414 (464)
Q Consensus 339 ~~l~~~l~~~g----~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~~~ 414 (464)
+.+.+.|++++ +.+.++++|||+|+.++. +++++|++++||++.||. ||+++.++
T Consensus 320 ~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------~~~~~L~~~~~V~~~~g~----------Ri~~a~l~ 378 (394)
T d2ay1a_ 320 EQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGDS----------RINIAGLN 378 (394)
T ss_dssp HHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------EEEGGGCC
T ss_pred HHHHHHHHHhCCCCceeeECCCceeEEecCcCH-----------HHHHHHHHhCCEEecCCC----------EEEecCCC
Confidence 99999998873 566788999999998753 467889999999999863 99998889
Q ss_pred HHHHHHHHHHHHHH
Q 037587 415 EETLQVALQRIKVF 428 (464)
Q Consensus 415 ~e~l~~~l~~l~~~ 428 (464)
++.++.+.++|.++
T Consensus 379 ~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 379 DNTIPILARAIIEV 392 (394)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888774
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=4.8e-39 Score=318.81 Aligned_cols=333 Identities=14% Similarity=0.131 Sum_probs=238.7
Q ss_pred CCceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCC----CcHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 35 PSGIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYH----GFPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 35 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~----g~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
++-++|++.+++.+..+...+...... +-..+ -+...|.... -.++|+++|++++....+ ...+..
T Consensus 55 ~~~~~~~~~gdp~~~~~~w~~~~~~~~----~~~~~----~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gn--a~t~~~ 124 (425)
T d2hoxa1 55 QGCSADVASGDGLFLEEYWKQHKEASA----VLVSP----WHRMSYFFNPVSNFISFELEKTIKELHEVVGN--AAAKDR 124 (425)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHHC----EEECT----TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTC--BCCTTC
T ss_pred CCceeeCCCCCCCCCCHHHHhCcccce----EEeec----ccccceecCCccccCCHHHHHHHHHHHhhhCC--CCCCCC
Confidence 566789999987776554332211110 00000 0111232211 138999999999876543 234556
Q ss_pred cEEEeCChHHHHHHHHHHh--------cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHH
Q 037587 111 KLVLTAGSTAANETLMFCL--------ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQ 182 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 182 (464)
+|++|+|++|+|..++.+| +.|||+|+++.|+|+.|...+... +.+... |.+|.+.+++.++
T Consensus 125 ~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~-~~~~~~--------~~~D~~~~~~~~~- 194 (425)
T d2hoxa1 125 YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYF-DKKGYV--------WAGNAANYVNVSN- 194 (425)
T ss_dssp EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS-CBTTEE--------EEEEGGGGTTCSC-
T ss_pred EEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHc-CCCCCc--------cCCCHHHHHhhCC-
Confidence 7999999999999999999 568999999999999998887766 655443 4456666665543
Q ss_pred HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCC
Q 037587 183 AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 183 ~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (464)
++++++++||||||||.+.. +..+++.+|.||+|.+..|. ++. . ..
T Consensus 195 -----~~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~-------~~~---~---------~~ 240 (425)
T d2hoxa1 195 -----PEQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYT-------PIK---Y---------KA 240 (425)
T ss_dssp -----GGGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTS-------CCC---S---------CB
T ss_pred -----CCceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCcccc-------chh---h---------hc
Confidence 38899999999999998732 23468999999999753332 211 1 23
Q ss_pred CcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--CCCChHHHHHHHHHcCCch--------hhHHHHHHHHH
Q 037587 263 SRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--GLVSSQTQYLLSRMLSDKK--------FTCNYMKENRK 332 (464)
Q Consensus 263 ~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~--------~~~~~~~~~~~ 332 (464)
+++|+++||||+||++|+|+||++++++.+.+.+.++..+ .+++.++|.++..+|+... ...++.+..++
T Consensus 241 ~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~ 320 (425)
T d2hoxa1 241 DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFK 320 (425)
T ss_dssp CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHH
T ss_pred CCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999988888887766665443 4578899999888876421 11345677788
Q ss_pred HHHHHHHHHHHHHHhCCCee---------------ecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCC
Q 037587 333 RLRKRKEMLVSGLKVAGIRC---------------LKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSS 397 (464)
Q Consensus 333 ~~~~~~~~l~~~l~~~g~~~---------------~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~ 397 (464)
.++++++.+.+.|++.+.-. ..+..+.|+|+++..... +++..+|+++||.++||+.
T Consensus 321 ~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~--------~~~~~lL~e~gI~v~pGs~ 392 (425)
T d2hoxa1 321 KLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEED--------KDCYQTFQNGRINTQNGVG 392 (425)
T ss_dssp HHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGG--------CSHHHHHHHTTEECEEGGG
T ss_pred HHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChH--------HHHHHHHHhCCEEEEechh
Confidence 89999999999998864211 112333478888764211 2456677899999999999
Q ss_pred CCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 398 CHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 398 f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
|+. +++|+|||+.. ++|.+++++++|++++++
T Consensus 393 FG~-~~~yvRisl~~-~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 393 FEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp GTS-CTTEEEEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred cCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 974 57899999985 889999999999999864
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=4.9e-28 Score=236.62 Aligned_cols=283 Identities=13% Similarity=0.062 Sum_probs=190.1
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCCCChhhhcccCCCcEEEEEec
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLP-TPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~-~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
+.+++++..+++++. ...+++++|+|+++++..++.++..+++.|+++ .|+|+.+...++.. |++++..
T Consensus 51 ~~~~l~~~~~~~~~~-------~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~-g~~~v~~-- 120 (366)
T d2aeua1 51 FAEKVNEYGLKHLGG-------DENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKIV-NAKYFES-- 120 (366)
T ss_dssp HHHHHHHHHHHHHTC-------CTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHT-TCEEEEE--
T ss_pred hHHHHHHHHHHHccC-------CCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHHHhc-CCeEECC--
Confidence 457888888888751 345789999999999999999986554545554 68999999988877 9886533
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
+ |++++++++.+ ++++|++++|+||+ +++.+++++|+++|+++|+++|+||+|+...|... ..
T Consensus 121 ~-------d~e~l~~~i~~------~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~--~~ 183 (366)
T d2aeua1 121 D-------KVGEILNKIDK------DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLF--NQ 183 (366)
T ss_dssp S-------CHHHHHTTCCT------TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT--TC
T ss_pred C-------CHHHHHHhcCC------CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccc--cC
Confidence 1 68888887754 89999999999986 36778999999999999999999999987655433 11
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc-cc-CCCChHHHHHHHHHcCCch
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS-SF-GLVSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~-~~~s~~~q~~~~~~l~~~~ 321 (464)
...... +..+++.|+||.+ +|+|+||++++++ +.+.++... .+ ..++++.|.++...|+...
T Consensus 184 ~~~~~~-------------~~di~~~S~sK~~--~g~~~G~i~~~~~-~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~ 247 (366)
T d2aeua1 184 PPALKL-------------GADLVVTSTDKLM--EGPRGGLLAGKKE-LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN 247 (366)
T ss_dssp CCHHHH-------------TCSEEEEETTSSS--SSCSCEEEEEEHH-HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC
T ss_pred CCHhhc-------------CceEEEecccccc--cccceeEEEecHH-HHHHHHHHHhcccccCCHHHHHHHHHHHHhcc
Confidence 222222 3457889999976 6899999999554 544444433 22 3467788888777765321
Q ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHHhC---CCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCC
Q 037587 322 F--TCNYMKENRKRLRKRKEMLVSGLKVA---GIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGS 396 (464)
Q Consensus 322 ~--~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~ 396 (464)
. ++++.+..++......+.+....... ......+.+.+|+|......... ......+++..|++++||.+.||.
T Consensus 248 ~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~Ll~~~gV~~ip~~ 326 (366)
T d2aeua1 248 LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI-NIKKLIEIGFNLLKNYGIITITVA 326 (366)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH-HHHHHHHHHHHHHHHHCEECSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceee-cccCHHHHHHHHHHhCCEEEEECC
Confidence 1 12222222211111222222222221 22233344556777765532111 123455788999999999999998
Q ss_pred CCCCCCCCeEEEEeec
Q 037587 397 SCHCNEPGWFRICFAN 412 (464)
Q Consensus 397 ~f~~~~~~~~Ris~~~ 412 (464)
.|. .+.+++||+++.
T Consensus 327 ~~p-~~~~~lRis~~~ 341 (366)
T d2aeua1 327 GMP-GASKSLRIDLTS 341 (366)
T ss_dssp SSC-SSCCSEEEETTS
T ss_pred CCC-CCCCEEEEeccc
Confidence 885 467789999985
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=8.5e-26 Score=220.29 Aligned_cols=300 Identities=14% Similarity=0.178 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCC
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSS 166 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~ 166 (464)
..+++.+|++++ .+++++|+|+++++..++.+++++||.|+++.++|......+... |++++.+|.+..
T Consensus 50 ~~~~~~~A~~~g----------~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~-g~~v~~v~~~~~ 118 (364)
T d2e7ja1 50 DFIHNQLPKFLG----------CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA-GLNIALVPKTDY 118 (364)
T ss_dssp HHHHTHHHHHTT----------SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHT-TCEEEEECCCCT
T ss_pred HHHHHHHHHHhC----------cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhc-cceEEEeeeccc
Confidence 456777777764 468999999999999999999999999999999998777777766 999999998877
Q ss_pred CCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccch
Q 037587 167 NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISI 246 (464)
Q Consensus 167 ~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~ 246 (464)
+++.+|++.+++.+++..+ ..++++|++++|+||||.+.+ +++|+++|+++|+++++|++|+...+. .+.
T Consensus 119 ~~~~i~~~~l~~~i~~~~k-~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~------~~~ 188 (364)
T d2e7ja1 119 PDYAITPENFAQTIEETKK-RGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP------VSL 188 (364)
T ss_dssp TTCCCCHHHHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC------CCH
T ss_pred cccccCHHHHHhhhhhhcc-cCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhh------hcc
Confidence 7889999999999987432 236778999999999999976 677899999999999999999732221 233
Q ss_pred hhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc--------C-CCChHHHHHHHHHc
Q 037587 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF--------G-LVSSQTQYLLSRML 317 (464)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~--------~-~~s~~~q~~~~~~l 317 (464)
.++ +..+++.|++|++|.+| ++||++++++.+.........+ . ........++.+.+
T Consensus 189 ~~~-------------g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 254 (364)
T d2e7ja1 189 KEI-------------GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASF 254 (364)
T ss_dssp HHH-------------TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHH
T ss_pred ccc-------------ccceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHH
Confidence 333 34477889999998666 7999998655332221111111 0 11122222222222
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec--CCccEEEEEecCcccc--cCChhHHHHHHHHHHHhcCeEEe
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK--SNAGLFCWVDMRHLLV--SNTFEAEKELWKKIIFEVGLNIS 393 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~--~~~g~f~~~~l~~~~~--~~~~~~~~~l~~~ll~~~gI~v~ 393 (464)
. ...++++...+.+ ++.+++.+.|.+.|+.+.. +.....+++..+.... ...... ..+....+.+.|+...
T Consensus 255 ~---~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 329 (364)
T d2e7ja1 255 P---HVRERIKRWDEEV-EKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGG-RFFLYRELKSRKIHGI 329 (364)
T ss_dssp H---HHHHHGGGHHHHH-HHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSG-GGHHHHHHHHTTEECS
T ss_pred H---HHHHHHHHHHHHH-HHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhcc-chHHHHHHHhcCCcee
Confidence 2 1122333333333 3456778888888876653 2222233444432100 000000 0123334456677543
Q ss_pred -CCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHhh
Q 037587 394 -PGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 394 -pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 432 (464)
+| ....+|++.-..++|+++.++++|+++++++
T Consensus 330 ~~g------~~~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 330 KPG------LTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp CTT------CCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cCC------CcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 22 2346777754468999999999999999875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.5e-23 Score=206.46 Aligned_cols=298 Identities=17% Similarity=0.191 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCCCChhhh---cccCCCcEEEE
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL----ADPGDAFLLPTPYYPGFDRD---LKWRPGVEIVP 160 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~~~~---~~~~~g~~~~~ 160 (464)
++|+.+|++++ +++++|++|+|+++++..++.++ .++||.|++.++.|+.+... ++.. |+++..
T Consensus 52 ~~R~~iA~~lg--------~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~-G~~v~~ 122 (391)
T d1p3wa_ 52 IARNQIADLVG--------ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFEVTY 122 (391)
T ss_dssp HHHHHHHHHHT--------CCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHcC--------CCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHc-CCEEEE
Confidence 57888888886 78999999999999999888765 47999999999999876543 3344 999999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+. ...+|++.+++++++ ++++|++++|+||||.++| +++|+++|+++|+++++|.+|+. +..
T Consensus 123 v~~~~--~~~~d~~~~~~~i~~------~T~lv~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~---g~~- 187 (391)
T d1p3wa_ 123 LAPQR--NGIIDLKELEAAMRD------DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSV---GKL- 187 (391)
T ss_dssp ECCCT--TSCCCHHHHHHHCCT------TEEEEECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTB---TTB-
T ss_pred eCCCC--CCeEcHHHHHHhCCC------CcEEEEEECCCCCCeeECC---HHHHHHHhccCCcEEEEeecccc---CCc-
Confidence 99874 446899999998864 8999999999999999998 55688888899999999999973 221
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH--------hcccCCCChHHHHH
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK--------MSSFGLVSSQTQYL 312 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~--------~~~~~~~s~~~q~~ 312 (464)
+ .++..+ +..+++.|.+|.+|.+| +|+++.+++.+...... ....+..+.....+
T Consensus 188 -~-~d~~~~-------------~~D~~~~s~~k~~g~~g--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~ 250 (391)
T d1p3wa_ 188 -P-IDLSQL-------------KVDLMSFSGHKIYGPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVG 250 (391)
T ss_dssp -C-CCTTTS-------------CCSEEEEESTTTTSCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHH
T ss_pred -c-ccchhc-------------cccccccccccccCCCc--eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhh
Confidence 0 121111 34467789999998777 47766644322111000 01112223333333
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-eeec--CC-ccEEEEEecCcccccCChhHHHHHHHHHHHhc
Q 037587 313 LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI-RCLK--SN-AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEV 388 (464)
Q Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~--~~-~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~ 388 (464)
+...+... .+......+.+++.+..+.+.|...+. .+.. .. ....+.+.++.. . ..++...+ .
T Consensus 251 l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l---~ 317 (391)
T d1p3wa_ 251 MGEAYRIA---KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-E------GESLIMAL---K 317 (391)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS-C------HHHHHHHT---T
T ss_pred hhhhhhHH---HHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC-C------hHHHHHHh---C
Confidence 33332211 223444455667777778888877632 2221 11 112222333321 1 11233332 4
Q ss_pred CeEEeCCCCCCCCC-----------------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCcccccc
Q 037587 389 GLNISPGSSCHCNE-----------------PGWFRICFAN-ITEETLQVALQRIKVFAQSCNPQMLLL 439 (464)
Q Consensus 389 gI~v~pg~~f~~~~-----------------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~~~~ 439 (464)
++.|+.|..|.... .+++|||++. .|+++++.++++|++++++.+..++.+
T Consensus 318 ~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~ 386 (391)
T d1p3wa_ 318 DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLW 386 (391)
T ss_dssp TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 78887776543211 2579999987 689999999999999999998766544
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.91 E-value=8.3e-24 Score=207.60 Aligned_cols=292 Identities=17% Similarity=0.190 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhh----cccCCCcEEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPI 161 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v 161 (464)
.++|+.+|++++ +++++|++|+|+|+++.+++.++ .++||.|+++++.|+..... .+.. |+++..+
T Consensus 53 ~~~r~~la~~~~--------~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~-g~~~~~v 123 (381)
T d1elua_ 53 AQLRQALAETFN--------VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARF-GITYRFF 123 (381)
T ss_dssp HHHHHHHHHHTT--------SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHH-CCEEEEE
T ss_pred HHHHHHHHHHhC--------CCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeeccccccccc-ccccccc
Confidence 457777888875 78899999999999999999997 67999999999999754432 3334 8999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh-CCeEEEEeccccccccCCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS-KRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~-~~~~lI~Deay~~~~~~~~~ 240 (464)
|.+.........+.+++.+ +++++++++++|+||||..+|.+++.++++.+.. .++++++|.+++. +..
T Consensus 124 ~~~~~~~~~~~~~~l~~~i------~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~---g~~- 193 (381)
T d1elua_ 124 PVAATLNQGDAAAVLANHL------GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSA---GSL- 193 (381)
T ss_dssp CCGGGSSSSCHHHHHHTTC------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTB---TTB-
T ss_pred ccccccccchHHHHHHhhh------cccccccccccccccccccchhhHHHHHHhhccccccccccccccccc---ccc-
Confidence 8754322222234444433 3589999999999999999997665444443221 4689999999873 222
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH----------------------
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK---------------------- 298 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~---------------------- 298 (464)
...+. ..+..+++.|++|.++ .+.++|+++.++..... +..
T Consensus 194 --~~~~~-------------~~~~D~~~~s~~K~~~-~p~G~g~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~ 256 (381)
T d1elua_ 194 --PLDFS-------------RLEVDYYAFTGHKWFA-GPAGVGGLYIHGDCLGE-INPTYVGWRSITYGAKGEPTGWAEG 256 (381)
T ss_dssp --CCCTT-------------TSCCSEEEEESSSTTC-CCTTCEEEEECTTTGGG-CCCCSCCTTTEEECTTSCEEEECSG
T ss_pred --ccccc-------------cccccccccccccccc-ccchhhHHHhhHHHHHh-cCccccccccccccccccccccccc
Confidence 11211 1245678899999996 33457888775443221 110
Q ss_pred --hcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec---CCccEEEEEecCcccccC
Q 037587 299 --MSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK---SNAGLFCWVDMRHLLVSN 372 (464)
Q Consensus 299 --~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~f~~~~l~~~~~~~ 372 (464)
....++.+.....++.+++..... ....+...++..++++++.+.|+++ |++++. +.++ ++++.++....
T Consensus 257 ~~~~~~gt~~~~~~~~~~~a~~~~~~-~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~~~-- 332 (381)
T d1elua_ 257 GKRFEVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSPLG-- 332 (381)
T ss_dssp GGGGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSSSC--
T ss_pred ccccccccccchhhhhhhhhhhhHHH-hcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCCCC--
Confidence 001123344444444444332111 0112334456667778889999887 776653 4555 55566543211
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
..++. ..|+++||.|+.. ..++++|||++. .+++++++++++|+++
T Consensus 333 ----~~~i~-~~L~~~gi~v~~~-----~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 333 ----HRAIV-QKLEEQRIYLRTI-----ADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp ----HHHHH-HHHHHTTEECEEE-----TTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred ----HHHHH-HHHHhCCcEEEec-----CCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 11344 4557889998743 236899999986 5899999999998764
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4.1e-22 Score=196.01 Aligned_cols=301 Identities=12% Similarity=0.067 Sum_probs=210.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
+.+|.+.+|++++ .+.+++++++++++..++.++++++|.|++..-.|..+...+... +.++..++.
T Consensus 92 ~~~lE~~lA~~~g----------~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~-~a~~~~~~~-- 158 (401)
T d1fc4a_ 92 HKELEQKLAAFLG----------MEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYAN-- 158 (401)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTS-CSEEEEECT--
T ss_pred HHHHHHHHHHhhc----------CCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHcccccc-CceEEEEcC--
Confidence 4578888888874 567899999999999999999999999999999998888777766 888877653
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~ 245 (464)
.|.+++++.++.....+....+|++....+..|...+ ++++.++|+++|+++|+||+++...++..+ ..
T Consensus 159 -----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G---~G 227 (401)
T d1fc4a_ 159 -----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG---RG 227 (401)
T ss_dssp -----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS---CC
T ss_pred -----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCC---Cc
Confidence 3678888887776555556666666655677787765 777888888999999999999976666441 12
Q ss_pred hhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-ccc--C-CCChHHHHHHHHHcCCch
Q 037587 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-SSF--G-LVSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-~~~--~-~~s~~~q~~~~~~l~~~~ 321 (464)
....... ..+..+++.||||++| |...|++.+ ++.+.+.++.. ..+ . ..++....++...+...
T Consensus 228 ~~~~~~~--------~~~~dii~~tl~Ka~g--g~~Gg~v~g-~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~- 295 (401)
T d1fc4a_ 228 SHEYCDV--------MGRVDIITGTLGKALG--GASGGYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV- 295 (401)
T ss_dssp HHHHTTC--------TTCCSEEEEESSSTTC--SSSCEEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH-
T ss_pred cchhccC--------CCCCeEEEeecccccc--cCCcccccC-CHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccc-
Confidence 2222211 2245678999999994 333488888 55555555433 222 2 23444444444444321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-C
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-C 400 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-~ 400 (464)
....+.++++.+...++.+.+...|+.+..+++. .+.+.+... ....++.+.|+ ++||++.+-.... +
T Consensus 296 ---~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~~p-Iv~v~~~~~------~~a~~~~~~L~-~~Gi~v~~i~~PtVp 364 (401)
T d1fc4a_ 296 ---EAGSELRDRLWANARQFREQMSAAGFTLAGADHA-IIPVMLGDA------VVAQKFARELQ-KEGIYVTGFFYPVVP 364 (401)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHHHHHTTCCBCCSSSS-EEEEEEECH------HHHHHHHHHHH-HTTEECCEECTTSSC
T ss_pred ---ccCHHHHHHHHHHHHHHHhhhcccCCccCCCCCC-EEEEEECCH------HHHHHHHHHHH-HCCceEEeECCCCCC
Confidence 1235567788888889999999999888776665 444444421 22335667765 6799987643322 2
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 401 NEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 401 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+...+|++++. .|+|++++++++|+++.++..
T Consensus 365 ~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg 398 (401)
T d1fc4a_ 365 KGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 234569999977 899999999999999998875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.7e-21 Score=190.37 Aligned_cols=292 Identities=10% Similarity=0.055 Sum_probs=203.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS 165 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~ 165 (464)
+.+|.+.||++++ .+..++.+++..++..++.++.+++|.|++....|..+...++.. +.+++.++-
T Consensus 85 ~~~lE~~LA~~~g----------~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~-~~~~~~~~h-- 151 (383)
T d1bs0a_ 85 HQALEEELAEWLG----------YSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS-PSQLRRFAH-- 151 (383)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTS-SSEEEEECT--
T ss_pred HHHHHHHHHHhcC----------CCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccccC-CCcceEecc--
Confidence 4778888888875 457788899999999999999999999999999998888887766 888887763
Q ss_pred CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccc
Q 037587 166 SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFIS 245 (464)
Q Consensus 166 ~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~ 245 (464)
.|.+++++.+.. ..++.++|++..+.+.+|.+.|. .+|+++|+++|+++++||+++...++..+ ..
T Consensus 152 -----nd~~~le~~l~~---~~~~~~~vv~e~v~s~~G~i~pl---~~l~~l~~~~~~~livDeah~~gv~G~~g---~G 217 (383)
T d1bs0a_ 152 -----NDVTHLARLLAS---PCPGQQMVVTEGVFSMDGDSAPL---AEIQQVTQQHNGWLMVDDAHGTGVIGEQG---RG 217 (383)
T ss_dssp -----TCHHHHHHHHHS---CCSSCEEEEEESBCTTTCCBCCH---HHHHHHHHHTTCEEEEECTTTTTTSSGGG---CC
T ss_pred -----hHHHHHHHHhcc---cCCCceEEEecCCCCCCCcccch---hHHHHHHHhcCcEEEeecceeeeecCCcc---cc
Confidence 378999888764 23456677888889999999875 55667788999999999999966554331 12
Q ss_pred hhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc-cc--C-CCChHHHHHHHHHcCCch
Q 037587 246 IMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS-SF--G-LVSSQTQYLLSRMLSDKK 321 (464)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~~--~-~~s~~~q~~~~~~l~~~~ 321 (464)
..+... ....+++.||+|++|..| |++.++. .+.+.++... .+ . ..++....++...+.-..
T Consensus 218 ~~~~~~----------~~~~~~~~t~~ka~g~~G---g~v~~~~-~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~ 283 (383)
T d1bs0a_ 218 SCWLQK----------VKPELLVVTFGKGFGVSG---AAVLCSS-TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR 283 (383)
T ss_dssp HHHHTT----------CCCSEEEEESSSTTSSCC---EEEEECH-HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH
T ss_pred hHHHcC----------Cccccccccccccccccc---cccccch-hHHHHHHhhchhhhhcccccchHHHHHHHHHHHHH
Confidence 222221 134456789999999888 8888844 4555554332 22 2 223333233333322111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC-C
Q 037587 322 FTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH-C 400 (464)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~-~ 400 (464)
....+..+.++.++..++.+.|.+.|+.+.++.+. ++.+.+... ....++.+.|+ ++||++.+..... +
T Consensus 284 --~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~-Ii~v~~g~~------~~a~~~~~~L~-~~Gi~v~~~~~PtVp 353 (383)
T d1bs0a_ 284 --SDEGDARREKLAALITRFRAGVQDLPFTLADSCSA-IQPLIVGDN------SRALQLAEKLR-QQGCWVTAIRPPTVP 353 (383)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSS-BCCEEEESH------HHHHHHHHHHH-HTTEECCEECTTSSC
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHhcCCccCCCCCC-EEEEEECCH------HHHHHHHHHHH-HCCceEEEEcCCCCC
Confidence 12245566777888889999999999888776664 333333321 22345666665 6799998754332 2
Q ss_pred CCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 401 NEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 401 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
.+...+||+++. .++|+++.+++.|+.+
T Consensus 354 ~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 354 AGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp TTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 334579999987 8999999999998763
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.89 E-value=5.8e-21 Score=185.94 Aligned_cols=296 Identities=11% Similarity=0.074 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEec
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL--ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHC 163 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~ 163 (464)
+.+|.+.+|+|++ .+..++.+.+..++..++.++ ..+||.|+.+.-.+......++.. +++++.++-
T Consensus 92 h~~LE~~lA~~~g----------~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls-~a~~~~f~H 160 (396)
T d2bwna1 92 HRRLEAEIAGLHQ----------KEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN-AGPKRIFRH 160 (396)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS-CCCEEEECT
T ss_pred HHHHHHHHHHHhC----------CCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhcc-ccCceEeec
Confidence 4678888888875 456777788888888888877 468899999998888888888776 888887763
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
-|.+.+++.++.. ...+.++|++....+.+|.+.| +.+|+++|+++|+++++||+++-..++..+..
T Consensus 161 -------nd~~~l~~l~~~~--~~~~~~~iv~egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G- 227 (396)
T d2bwna1 161 -------NDVAHLRELIAAD--DPAAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAG- 227 (396)
T ss_dssp -------TCHHHHHHHHHHS--CTTSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCC-
T ss_pred -------chHHHhhhHHhhh--cccCceeEEEEeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeecccccc-
Confidence 2677787776542 2234556677777889999987 56677788899999999999996666544222
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc-c--cCC-CChHHHHHHHHHcCC
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS-S--FGL-VSSQTQYLLSRMLSD 319 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-~--~~~-~s~~~q~~~~~~l~~ 319 (464)
+.....- .....++++||||+||..| ||+.+ ++.+.+.++... + |.+ .++....++.+.+.-
T Consensus 228 --~~~~~~~--------~~~~di~~gTlsKa~g~~G---g~v~~-~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i 293 (396)
T d2bwna1 228 --VAERDGL--------MHRIDIFNGTLAKAYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAF 293 (396)
T ss_dssp --HHHHHTC--------GGGCSEEEEESSSTTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHH
T ss_pred --chhhcCC--------ceeeeeeeecccccccccc---cccch-hHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHH
Confidence 2222110 2245688999999999888 99888 455555554432 2 222 233333333332221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCH 399 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~ 399 (464)
.. ....++.+..+..+.+++.+.+...|+.+.++++. .+.+.+... ....+++.++|+++||.|.+.....
T Consensus 294 ~~--~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~sp-Ivpv~ig~~------~~~~~~a~~lL~e~Gi~v~~i~~Pt 364 (396)
T d2bwna1 294 LK--TAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSH-IVPVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPT 364 (396)
T ss_dssp HT--SHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS-CEEEECCCH------HHHHHHHHHHHHHHCEECCEECTTT
T ss_pred hh--cchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHHHhCCEEEEEECCCc
Confidence 10 11234556677778888899999889888765553 555555421 2334677888888899987655433
Q ss_pred -CCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 400 -CNEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 400 -~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
+.+...+||+++. .|+++++.++++|+++
T Consensus 365 Vp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 365 VPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp SCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 2345679999987 8999999999999875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=2.6e-22 Score=192.51 Aligned_cols=335 Identities=10% Similarity=0.083 Sum_probs=204.0
Q ss_pred eEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCC
Q 037587 38 IIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAG 117 (464)
Q Consensus 38 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G 117 (464)
+|||....---|.|.+.+++.+.. .....|.+.....+|++.+|++++ .+++++++|
T Consensus 1 ~~~~~~~~~t~p~p~v~~A~~~a~-------------~g~~~yg~~p~~~~le~~lA~~~G----------~~~~~~~~s 57 (343)
T d1m6sa_ 1 MIDLRSDTVTKPTEEMRKAMAQAE-------------VGDDVYGEDPTINELERLAAETFG----------KEAALFVPS 57 (343)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCC-------------CCCGGGTCCHHHHHHHHHHHHHTT----------CSEEEEESC
T ss_pred CcccccccCCCCCHHHHHHHHhhh-------------cCCcccCCCHHHHHHHHHHHHHHC----------CCeEEEeCC
Confidence 478866543335566777765531 122357665567889999999875 346889999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh---cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEE
Q 037587 118 STAANETLMFCLADPGDAFLLPTPYYPGFDRD---LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVL 194 (464)
Q Consensus 118 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vi 194 (464)
+++++..++.+++.+||.+++..+.+..+... .... +..+..++.+ ....+++.+++.+........++..++
T Consensus 58 Gt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ 133 (343)
T d1m6sa_ 58 GTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLS-GVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIA 133 (343)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHT-CCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHHHHHHHHHHHhccCCceeccccccceeeecccccccc-cceeeccccc---cCccCHHHHHHhhhhhhcccccccccc
Confidence 99999999999999999999999987544332 2222 5556555543 345688888888764333334555554
Q ss_pred E-eCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCc
Q 037587 195 I-TNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSK 273 (464)
Q Consensus 195 l-~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK 273 (464)
+ +.++|+.|.+++.+++++|.++|+++++++++|++|..+..... . ........ .....+.+.+|
T Consensus 134 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~--~-~~~~~~~~-----------~~~~~~~~~~~ 199 (343)
T d1m6sa_ 134 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIAS--G-VPVKEYAG-----------YADSVMFCLSK 199 (343)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHH--C-CCHHHHHH-----------TCSEEEEESSS
T ss_pred cccccccCCceecCHHHHHHHHHHHHhcCeEEEecccccccccccc--c-cchhhhcc-----------ccccccccccc
Confidence 4 45689999999999999999999999999999999986433221 1 11111111 12222333333
Q ss_pred CCCCCccEEEEEEecCHHHHHHHHHhccc-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 037587 274 DFSMPGFRVGMIYSNNERVVSAATKMSSF-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIR 351 (464)
Q Consensus 274 ~~g~~GlRiG~l~~~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 351 (464)
+..|.+.|++++..+.+.......... .+.+.....++......... ..+. +...++...+.+.+.+. +..
T Consensus 200 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~ 272 (343)
T d1m6sa_ 200 --GLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM-VDRL----KEDHENARFLALKLKEIGYSV 272 (343)
T ss_dssp --TTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS-STTH----HHHHHHHHHHHHHHHHHTCBC
T ss_pred --cccccccccccccHHHHhhhHhhCcccccccchhHHHHHhhhhhhhhh-HHHH----HHHHHHHHHhhhHHHHhccCc
Confidence 335556788877544433322222222 22222222222222111111 1112 22233334445555444 222
Q ss_pred eecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 352 CLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 352 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
...+...+++|++++.... ...+++..|. ++||.++|. +++++||+++. .++|++++++++|+++++
T Consensus 273 ~~~~~~~~~v~~~~~~~~~-----~a~~l~~~L~-~~Gi~v~~~------~~~~iRi~~~~~~t~edid~~v~~l~~v~~ 340 (343)
T d1m6sa_ 273 NPEDVKTNMVILRTDNLKV-----NAHGFIEALR-NSGVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEKLFR 340 (343)
T ss_dssp CGGGCCSSEEEEECTTSSS-----CHHHHHHHHH-HHTEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEeCCCcc-----cHHHHHHHHH-HCCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 2223334588998874211 1235667765 679999875 25689999976 789999999999999998
Q ss_pred hh
Q 037587 431 SC 432 (464)
Q Consensus 431 ~~ 432 (464)
++
T Consensus 341 ~~ 342 (343)
T d1m6sa_ 341 KF 342 (343)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.85 E-value=2.7e-20 Score=176.63 Aligned_cols=329 Identities=14% Similarity=0.141 Sum_probs=195.7
Q ss_pred cccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHH
Q 037587 44 AENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAAN 122 (464)
Q Consensus 44 ~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al 122 (464)
|+|+.+ +|.+.+++.+.. ......|++.....++|+.||++++ +++++|++|+|+++++
T Consensus 6 nd~~~g~~P~v~eAl~~~~------------~~~~~~y~~~~~~~~lr~~ia~~~g--------~~~~~v~~tsggtean 65 (340)
T d1svva_ 6 NDYSVGMHPKILDLMARDN------------MTQHAGYGQDSHCAKAARLIGELLE--------RPDADVHFISGGTQTN 65 (340)
T ss_dssp CSCSSCCCHHHHHHHHHHT------------TCCCCSTTCSHHHHHHHHHHHHHHT--------CTTSEEEEESCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHh------------hcCCCCCCCCHHHHHHHHHHHHHhC--------CCcceEEEcCCHHHHH
Confidence 566664 466677665521 1234557655566789999999986 6788999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChhhhccc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCC
Q 037587 123 ETLMFCLADPGDAFLLPTPYYPGFDRDLKW-RPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNP 201 (464)
Q Consensus 123 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NP 201 (464)
..++..++.+++.+++..+.+..+...... ..+......... ....+.+...+..............++++.+.|+
T Consensus 66 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (340)
T d1svva_ 66 LIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNTTE 142 (340)
T ss_dssp HHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCT
T ss_pred HHHHHHHhhhccccccccccceeeeecccccccceeeeecccc---cccccchhHHHHhhhhhcccCCcceeeeeccccc
Confidence 999999999999999998887654333221 113333333322 1223444444444332222223344555555566
Q ss_pred CCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccE
Q 037587 202 LGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFR 281 (464)
Q Consensus 202 tG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlR 281 (464)
+|.+.+.+++..+.+.|.+++.++++|++|......... .......... ...+...+.+|..+ +.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~ 208 (340)
T d1svva_ 143 VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPV-NDLTLADIAR-----------LTDMFYIGATKAGG--MFG 208 (340)
T ss_dssp TSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT-CCCCHHHHHH-----------HCSEEEEECTTTTC--SSC
T ss_pred ccccccHHHhhhhhcccccccceeeeeccceeeeecccc-cccccccccc-----------cceeeecCCccccc--ccc
Confidence 777788899999999999999999999999754333220 1112111111 22344445555543 334
Q ss_pred EEEEEecCHHHHHHH--HHhccc-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCcc
Q 037587 282 VGMIYSNNERVVSAA--TKMSSF-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAG 358 (464)
Q Consensus 282 iG~l~~~~~~~~~~~--~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 358 (464)
.++............ ...... ........+++..++....+ ....+....++.++...|+..|+++..|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~ 283 (340)
T d1svva_ 209 EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLF-----FELGAHSNKMAAILKAGLEACGIRLAWPSAS 283 (340)
T ss_dssp EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHHHTTCCBSSCCSS
T ss_pred ccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHH-----HHHHHHHHHHHhhhHHHHhcCCCeeecCCCc
Confidence 455554322221111 111111 22233444455555655443 3334556667788889999999987754444
Q ss_pred EEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 359 LFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 359 ~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
.++++.++. +...+++++..+...+... .+.+++|++++. .|++++++++++|+++
T Consensus 284 ~~v~~~~~~-----------~~~~~l~~~~~~~~~~~~~---~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 284 NQLFPILEN-----------TMIAELNNDFDMYTVEPLK---DGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp SEECBEEEH-----------HHHHHHTTTEECEEEEEET---TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred eEEEEeCCH-----------HHHHHHHHhhhhhcccccC---CCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 588888763 2345555432222222221 246789999876 7999999999999863
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.8e-19 Score=177.81 Aligned_cols=293 Identities=15% Similarity=0.171 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHH----hcCCCCeEEEcCCCCCChhhh----cccCCCcEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFC----LADPGDAFLLPTPYYPGFDRD----LKWRPGVEI 158 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~----l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~ 158 (464)
.+.|+.+|++++. .++++|++|+|+|+++..++.+ ...+||.|++..-.|+..... ++.. |+++
T Consensus 69 e~~R~~ia~~l~~-------~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~-g~~v 140 (405)
T d1jf9a_ 69 ENVRKRASLFINA-------RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-GAEL 140 (405)
T ss_dssp HHHHHHHHHHTTC-------SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-TCEE
T ss_pred HHHHHHHHHHcCC-------CCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHc-CcEE
Confidence 4567778887751 2458999999999999988876 357899999999999875433 3444 9999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
+.+|+++++ .+|++.+++++.+ ++++|+++..+|.||..+| +++|.++|+++|+++++|.+++. +.
T Consensus 141 ~~~~~~~~g--~~~~~~~~~~i~~------~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~---g~ 206 (405)
T d1jf9a_ 141 RVIPLNPDG--TLQLETLPTLFDE------KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAV---MH 206 (405)
T ss_dssp EEECBCTTS--CBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTT---TT
T ss_pred EEECCCCCC--cCCHHHHHHhccC------CcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceec---cc
Confidence 999987543 5788888887654 8999999999999999987 55578888899999999999873 22
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-------------------
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM------------------- 299 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~------------------- 299 (464)
. ..++..+ +..+++.|++|++|.+| +|+++.+++ +.......
T Consensus 207 ~---~id~~~~-------------~~D~~~~s~hK~~Gp~G--~g~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (405)
T d1jf9a_ 207 H---PVDVQAL-------------DCDFYVFSGHKLYGPTG--IGILYVKEA-LLQEMPPWEGGGSMIATVSLSEGTTWT 267 (405)
T ss_dssp S---CCCHHHH-------------TCSEEEEEGGGTTSCSS--CEEEEECHH-HHTTCCCSSCSSSSEEECCTTTCCEEC
T ss_pred c---ccchhhc-------------CCceeeccccccccCCC--ceeeeechh-hhcccCcccccccccCccccccccccc
Confidence 1 1233333 45678999999998667 688888543 32211100
Q ss_pred -----cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-eeecC--CccEEEEEecCccccc
Q 037587 300 -----SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI-RCLKS--NAGLFCWVDMRHLLVS 371 (464)
Q Consensus 300 -----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~~--~~g~f~~~~l~~~~~~ 371 (464)
...++.+.....++..+++... ....+...+......+.+.+.++..+. ....+ ..+ .+.+.++...
T Consensus 268 ~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~-ivsf~~~~~~-- 342 (405)
T d1jf9a_ 268 KAPWRFEAGTPNTGGIIGLGAALEYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG-VIAFNLGKHH-- 342 (405)
T ss_dssp CTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCS-EEEEEETTCC--
T ss_pred cchhhhcCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCc-EEEEEcCCCC--
Confidence 0012344455555555544211 111333444444555566677776643 33332 234 4445555321
Q ss_pred CChhHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 372 NTFEAEKELWKKIIFEVGLNISPGSSCHC------NEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 372 ~~~~~~~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
..++ ..+|.++||.++.|+.|.. ..++++|||++. .+++|++.++++|+++.+-
T Consensus 343 -----~~~~-~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 343 -----AYDV-GSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp -----HHHH-HHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHH-HHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1123 3445788999998876542 246889999988 7899999999999998763
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=1.4e-19 Score=176.76 Aligned_cols=294 Identities=16% Similarity=0.196 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHH----hcCCCCeEEEcCCCCCChhhh---cccCCCcEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFC----LADPGDAFLLPTPYYPGFDRD---LKWRPGVEIV 159 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~----l~~~gd~Vlv~~p~y~~~~~~---~~~~~g~~~~ 159 (464)
.+.|+.+|++++ +++++|++++|+|+++..++.+ ...+|+.|++....|+.+... ++.. |++++
T Consensus 47 ~~aR~~ia~l~~--------~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-g~~v~ 117 (376)
T d1eg5a_ 47 EKAREKVAKVLG--------VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK-GFKVK 117 (376)
T ss_dssp HHHHHHHHHHHT--------SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHHHcC--------CCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhc-CCEEE
Confidence 356788888886 7899999999999999998864 356788888888888765543 3444 99999
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 160 PIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 160 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
.+|+++ .+.+|++++++++++ ++++|++++++|+||..++.+++.+++.. ...++++++|.+++ ++..
T Consensus 118 ~vp~~~--~~~id~~~l~~~i~~------~t~lv~is~v~~~tG~~~~~~~i~~~~~~-~~~~~~~~vD~~q~---~g~~ 185 (376)
T d1eg5a_ 118 YVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQPVEDVTRIVKK-KNKETLVHVDAVQT---IGKI 185 (376)
T ss_dssp ECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHH-HCTTCEEEEECTTT---TTTS
T ss_pred EEcCCC--CCeECHHHHHHhcCC------CceEEEEECCccccceeeeehhhhhhhhh-cccCceeEEEeeec---cccc
Confidence 999875 457899999998865 99999999999999999998887776653 34588999999887 3222
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHH-----HhcccCCCChHHHHHHH
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAAT-----KMSSFGLVSSQTQYLLS 314 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~-----~~~~~~~~s~~~q~~~~ 314 (464)
..++. ..+..+++.|++|++|.+|..+.|+.... .+..... .....+..+......+.
T Consensus 186 ---~~d~~-------------~~~~D~~~~s~~K~~gp~G~~~l~~~~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (376)
T d1eg5a_ 186 ---PFSLE-------------KLEVDYASFSAHKFHGPKGVGITYIRKGV-PIRPLIHGGGQERGLRSGTQNVPGIVGAA 248 (376)
T ss_dssp ---CCCCT-------------TTCCSEEEEEGGGGTSCTTCEEEEECTTS-CCCCSBCSSCTTTTTBCSCCCHHHHHHHH
T ss_pred ---ccccc-------------ccCccceecccceeecCCCceeEEeccCc-ccCCcccCCCCcccccCCcccchhhhhHH
Confidence 12211 22566889999999998898777653211 1000000 00001112333333333
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC----CccEEEEEecCcccccCChhHHHHHHHHHHHhcCe
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS----NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGL 390 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~----~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI 390 (464)
....... ...............++.+.|.......... ..+ .+...++.. . . +.....|+++||
T Consensus 249 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~------~-~-~~~~~~L~~~gI 316 (376)
T d1eg5a_ 249 RAMEIAV---EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPN-TLSVSFPNI------R-G-STLQNLLSGYGI 316 (376)
T ss_dssp HHHHHHH---HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTT-EEEEECTTC------C-H-HHHHHHHHHTTE
T ss_pred HHhhccc---cchhhhhhhhhhhhhhhccccccccccccccccccccc-eeeeccCCC------C-H-HHHHHHHhhCCe
Confidence 3222111 1122233344445566777777654333321 112 222333321 1 1 233445678999
Q ss_pred EEeCCCCCCCCC-----------------CCeEEEEeec-CCHHHHHHHHHHHHHHHH
Q 037587 391 NISPGSSCHCNE-----------------PGWFRICFAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 391 ~v~pg~~f~~~~-----------------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
.|++|..+.... .+++|||++. .|++|++.++++|++++.
T Consensus 317 ~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 317 YVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp ECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 999887554211 2469999987 689999999999999875
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=2.6e-19 Score=171.05 Aligned_cols=331 Identities=12% Similarity=0.088 Sum_probs=199.3
Q ss_pred EEeeccccccc-HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCC
Q 037587 39 IQMGLAENQLS-FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAG 117 (464)
Q Consensus 39 i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G 117 (464)
++|+. +|..+ .|.+.+++.+.. ..+...|.......++|+.+|++++ .+..+++|+|
T Consensus 5 ~~f~s-~n~~g~~P~v~~A~~~a~------------~~~~~~~~~~~~~~~l~~~la~~~g---------~~~~v~f~~s 62 (345)
T d1v72a1 5 LGFSS-DNIAGASPEVAQALVKHS------------SGQAGPYGTDELTAQVKRKFCEIFE---------RDVEVFLVPT 62 (345)
T ss_dssp CBCSC-GGGCCCCHHHHHHHHHTT------------SSCCCSTTCSHHHHHHHHHHHHHHT---------SCCEEEEESC
T ss_pred cCcCC-CCCCCCCHHHHHHHHHHh------------ccCccccCCCHHHHHHHHHHHHHHC---------CCcEEEECCc
Confidence 56664 55553 466777766531 1233456555556788888888886 2457899999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcc--cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceE-EEE
Q 037587 118 STAANETLMFCLADPGDAFLLPTPYYPGFDRDLK--WRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVK-GVL 194 (464)
Q Consensus 118 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~--~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~-~vi 194 (464)
+++++..++..++.+++.+++....+........ ...+..+..++.. .+...+++.++..+.........+. .++
T Consensus 63 Gt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 140 (345)
T d1v72a1 63 GTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG--PAAKLDIVRLRERTREKVGDVHTTQPACV 140 (345)
T ss_dssp HHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC--GGGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred hHHHHHHHHHHHHhcCCccccccccceeeechhhHHHhcCccccccccc--ccccccHHHhhhhhcccccccccccceee
Confidence 9999999999999999888877766543332211 1225556555433 3556789999888764222212233 345
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcC
Q 037587 195 ITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKD 274 (464)
Q Consensus 195 l~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~ 274 (464)
.+++.|++|...+.++++++.++|+++|+++++|+++....+...... ...... .........+.+|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~~~ 208 (345)
T d1v72a1 141 SITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS-PAEMTW-----------KAGVDALSFGATKN 208 (345)
T ss_dssp EEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC-TTTTTG-----------GGTCCEEEECCGGG
T ss_pred eeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccC-HHHhhc-----------cccccccccCcccc
Confidence 566789999999999999999999999999999999975432211001 011111 11233334444444
Q ss_pred CCCCccEEEEEEecCHHHHHHHHHh-cccCCCCh--HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 037587 275 FSMPGFRVGMIYSNNERVVSAATKM-SSFGLVSS--QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GI 350 (464)
Q Consensus 275 ~g~~GlRiG~l~~~~~~~~~~~~~~-~~~~~~s~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 350 (464)
.+ .+.+.+ +.............. ......+. ....+....+.+.. ..+......++...+.+.+.++ |+
T Consensus 209 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~g~ 281 (345)
T d1v72a1 209 GV-LAAEAI-VLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDL-----WLRNARKANAAAQRLAQGLEGLGGV 281 (345)
T ss_dssp TC-SSCEEE-EESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred cc-cccccc-ccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhh-----hhhhccchhhHHHHHHHHHHhcCCc
Confidence 33 222233 222222222222211 11222222 22233333344432 2333344445556677778777 77
Q ss_pred eeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHH
Q 037587 351 RCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVF 428 (464)
Q Consensus 351 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 428 (464)
.+..+..+++++++++. +.++.|+ ++||.|.++. .+++.+||+++. +|+|++++++++|+++
T Consensus 282 ~~~~p~~~niv~~~~~~-----------~~~~~L~-~~gi~v~~~~----~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 282 EVLGGTEANILFCRLDS-----------AMIDALL-KAGFGFYHDR----WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp EEESCCCSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS----SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred EeccCCCccEEEEEcCH-----------HHHHHHH-HcCCCccccC----CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 77755555688888863 2456665 5699886442 246789999987 7899999999999874
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.81 E-value=9.8e-18 Score=165.28 Aligned_cols=292 Identities=15% Similarity=0.167 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCC-CCcEEEeCChHHHHHHHHHH----hcCCCCeEEEcCCCCCChhhh----cccCCCcEE
Q 037587 88 DAKKELVKLMARIRGNKVKFD-PNKLVLTAGSTAANETLMFC----LADPGDAFLLPTPYYPGFDRD----LKWRPGVEI 158 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~-~~~i~it~G~~~al~~~~~~----l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~ 158 (464)
+.|+.+|++++ ++ ++.|++++++++++.+++.. -.++||.|++.+-.|+..... ++.. |.++
T Consensus 70 ~aR~~ia~llg--------a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~-g~~v 140 (408)
T d1t3ia_ 70 AVRNKVAKFIN--------ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-GAVL 140 (408)
T ss_dssp HHHHHHHHHTT--------CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-CCEE
T ss_pred HHHHHHHHHhC--------CCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhcc-CceE
Confidence 56777777775 54 57899999999999998866 357899999999888865443 3334 8899
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
..++.+.. ...+.+.+++.+.+ ++++|+++..+|-||..+| +++|.++|+++|+++++|.+++ .+.
T Consensus 141 ~~~~~~~~--~~~~~~~l~~~~~~------~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~---~g~ 206 (408)
T d1t3ia_ 141 KFVQLDEQ--ESFDLEHFKTLLSE------KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQS---APH 206 (408)
T ss_dssp EEECBCTT--SSBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTT---TTT
T ss_pred eeeecccc--ccccHHHhhhccCC------CceEEEEecccccccccCc---HHHHhhhhhccCceeeecccee---ccc
Confidence 99987643 35678888887654 8999999999999999988 4567788889999999999987 332
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-------------------
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM------------------- 299 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~------------------- 299 (464)
. ..++..+ +..+++.|.+|.+|.+| +|+++.+++ ........
T Consensus 207 ~---~id~~~~-------------~~D~~~~s~hK~~gp~G--~g~l~v~~~-~~~~~~p~~~g~~~~~~~~~~~~~~~~ 267 (408)
T d1t3ia_ 207 Y---PLDVQLI-------------DCDWLVASGHKMCAPTG--IGFLYGKEE-ILEAMPPFFGGGEMIAEVFFDHFTTGE 267 (408)
T ss_dssp S---CCCHHHH-------------TCSEEEEEGGGTTSCTT--CEEEEECHH-HHHHSCCCSCSTTSEEEECSSCEEECC
T ss_pred c---ccccccc-------------CCceEEeccccccCCCC--ccccccchh-hhhcCCceecCCcccccccccccccCC
Confidence 2 1343333 45678899999987556 688888544 33222110
Q ss_pred ----cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC------CccEEEEEecCcc
Q 037587 300 ----SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS------NAGLFCWVDMRHL 368 (464)
Q Consensus 300 ----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~------~~g~f~~~~l~~~ 368 (464)
...++.+.....++..+++--. ..-.++.++......+++.+.+.+. ++.+..+ .++ .+.+.++..
T Consensus 268 ~~~r~e~Gt~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-iv~f~~~~~ 344 (408)
T d1t3ia_ 268 LPHKFEAGTPAIAEAIALGAAVDYLT--DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAA-LASFNVAGL 344 (408)
T ss_dssp TTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCS-EEEEEETTB
T ss_pred chhhhcCCcHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcce-EEEEEeCCC
Confidence 0012344455555555543111 1123334445555666677777776 4554422 233 444555431
Q ss_pred cccCChhHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 369 LVSNTFEAEKELWKKIIFEVGLNISPGSSCHC------NEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 369 ~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
. ..++.. .|.++||.++.|..|.. +.++.+|||++. .|++|++.+++.|+++++..
T Consensus 345 -~------~~~v~~-~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 345 -H------ASDVAT-MVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp -C------HHHHHH-HHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -C------HHHHHH-HHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1 113444 45788999998876642 346789999988 78999999999999998753
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.80 E-value=5.4e-18 Score=168.82 Aligned_cols=327 Identities=16% Similarity=0.148 Sum_probs=209.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEE
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEI 158 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~ 158 (464)
.|.......+|.+.+|++++ .+.++++++++.|+.+++.+++++||.|+.....+. ....+... |...
T Consensus 70 ~Y~~dpt~~~lE~~~a~l~G----------~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~-~~~~i~~~-g~~~ 137 (456)
T d1c7ga_ 70 AYAGSENFYHLEKTVKELFG----------FKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TRFHQEKN-GATF 137 (456)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEESSHHHHHHHHHHHHCCTTEEEEESSCCHH-HHHHHHHT-TEEE
T ss_pred hccCCchHHHHHHHHHHHhC----------CCeEEECCCHHHHHHHHHHHhcCCCCeEecCcchHH-HHHHHHHc-Ccee
Confidence 57766667899999999985 456889999999999999999999999887665333 33334444 7777
Q ss_pred EEEecCC--------CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHHhhCCeEEEEec
Q 037587 159 VPIHCSS--------SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL-GTAMTHQELNHLINFSKSKRIHIVSDE 229 (464)
Q Consensus 159 ~~v~~~~--------~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPt-G~~~s~~~l~~i~~~~~~~~~~lI~De 229 (464)
+.+..+. ...+.+|++.|++.|++.. ...+.++++.+|+|+. |..++.+++++|.++|+++|+.+++|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~--~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~ 215 (456)
T d1c7ga_ 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA 215 (456)
T ss_dssp EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred eeccccccccccccCCccccCCHHHHHHHhhhcC--CccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence 7655421 1245789999999998642 1356788999999886 578899999999999999999999999
Q ss_pred cccccc--cC---CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc----
Q 037587 230 IYSGTV--FD---SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS---- 300 (464)
Q Consensus 230 ay~~~~--~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~---- 300 (464)
+..... +. .......++.++..++. . -..++..|++|.++.++ .|+++.+++.+.+..+...
T Consensus 216 a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~------~-~ad~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~ 286 (456)
T d1c7ga_ 216 TRCVENAYFIKEQEAGYENVSIKDIVHEMF------S-YADGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYE 286 (456)
T ss_dssp TTHHHHHHHHHHHSTTCTTSCHHHHHHHHH------T-TCSEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHT
T ss_pred chhhcchhhhcccccccCCCChhhhccccc------c-ccccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccC
Confidence 874210 10 01001123333322210 0 12244569999997553 3888887877766554332
Q ss_pred c---cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccc---cCCh
Q 037587 301 S---FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV---SNTF 374 (464)
Q Consensus 301 ~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~---~~~~ 374 (464)
. ++..+.....+++..+....- .++++++ .++.++|.+.|.+.|+.+..+.++..++++...... ...
T Consensus 287 g~~~~g~~~~~~~~a~a~~l~e~~~-~~~l~~r----~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~- 360 (456)
T d1c7ga_ 287 GMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHR----VKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQ- 360 (456)
T ss_dssp CCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHH----HHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGG-
T ss_pred CCcccchhhHHHHHHHHHHHHHhcC-HHHHHHH----HHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCccc-
Confidence 1 122333322232222221110 1222222 334577888999999998888888888887543221 111
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCC--CC---------CCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhCc
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSC--HC---------NEPGWFRICFAN--ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f--~~---------~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
....++...++.+.||...+...+ +. .....+|+++.. .|+++++.++++|+++.++...
T Consensus 361 ~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~ 433 (456)
T d1c7ga_ 361 FPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED 433 (456)
T ss_dssp CHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGG
T ss_pred ccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhh
Confidence 123356677777889975432111 10 112469999874 4899999999999999876553
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.7e-18 Score=167.18 Aligned_cols=301 Identities=14% Similarity=0.152 Sum_probs=194.3
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh--cccCCCcEEEEEe
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPN-KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD--LKWRPGVEIVPIH 162 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--~~~~~g~~~~~v~ 162 (464)
..+.|+.++++++ ++.+ .|+++.|+|++++.++..++.+|+++++...++...... .... +..+..+.
T Consensus 54 ~~ea~~~l~~llg--------~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 124 (388)
T d1h0ca_ 54 MDEIKEGIQYVFQ--------TRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERI-GARVHPMT 124 (388)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHH-C--CBCCB
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeeccccccc-cccccccc
Confidence 3555666666664 4333 688999999999999999999999999998877543322 2222 55555555
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.+ .+..++.+.+++.+... +++++++++.+|.||...+ +++|.++|+++|+++++|.+++- +.. +
T Consensus 125 ~~--~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~---g~~--~ 189 (388)
T d1h0ca_ 125 KD--PGGHYTLQEVEEGLAQH-----KPVLLFLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASL---GGT--P 189 (388)
T ss_dssp CC--TTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTT---TTS--C
T ss_pred cC--CccccchHHHHHHhccC-----CcceEEEeeeeeccccccC---HHHHHHHhhcccccceecccccc---ccc--c
Confidence 43 34457888888777653 7889999999999999976 66688889999999999999873 222 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHH-----------------hc-----
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATK-----------------MS----- 300 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~-----------------~~----- 300 (464)
.++. ..+..+++.|..|.++.++ .+|+++.+...+ +.... ..
T Consensus 190 -~d~~-------------~~~~D~~~~s~~K~~~gp~-g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (388)
T d1h0ca_ 190 -LYMD-------------RQGIDILYSGSQKALNAPP-GTSLISFSDKAK-KKMYSRKTKPFSFYLDIKWLANFWGCDDQ 253 (388)
T ss_dssp -CCTT-------------TTTCSEEEEESSSTTCCCT-TCEEEEECHHHH-HHHTTCSSCCSCSTTCHHHHHHHTTCSSS
T ss_pred -cccc-------------ccccceecccccccccCCC-ceEEEeecHHHH-Hhhhhccccccccccccchhhhhhhhccc
Confidence 1211 2255678889999985343 357777644332 22211 00
Q ss_pred --c-cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC----ccEEEEEecCcccccCC
Q 037587 301 --S-FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN----AGLFCWVDMRHLLVSNT 373 (464)
Q Consensus 301 --~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~f~~~~l~~~~~~~~ 373 (464)
. ..+.+.....++..++... .+..++...++..+..+++.+.+...|+....++ ....+.+.+|+..+
T Consensus 254 ~~~~~~t~~~~~~~~~~~al~~~--~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~--- 328 (388)
T d1h0ca_ 254 PRMYHHTIPVISLYSLRESLALI--AEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYD--- 328 (388)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC---
T ss_pred cccccccccHHHHHHHHHHHHHH--HHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCC---
Confidence 0 1123333333333333211 0122445555666677778888887776554322 22245566765432
Q ss_pred hhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE-eec-CCHHHHHHHHHHHHHHHHhhCccc
Q 037587 374 FEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC-FAN-ITEETLQVALQRIKVFAQSCNPQM 436 (464)
Q Consensus 374 ~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris-~~~-~~~e~l~~~l~~l~~~l~~~~~~~ 436 (464)
..++...|++++||.+..|... ...+.|||| ++. .+.|+++.++++|++++++.+.++
T Consensus 329 ---~~~~~~~L~~~~gI~v~~G~~~--~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~ 388 (388)
T d1h0ca_ 329 ---WRDIVSYVIDHFDIEIMGGLGP--STGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK 388 (388)
T ss_dssp ---HHHHHHHHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred ---HHHHHHHHHhcCCEEEeCCchh--hcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 2357788888889999988543 245689999 664 688999999999999999887653
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.73 E-value=2e-16 Score=158.55 Aligned_cols=329 Identities=14% Similarity=0.151 Sum_probs=196.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCe-------EEEcCCCCCChhhhcc
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDA-------FLLPTPYYPGFDRDLK 151 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~-------Vlv~~p~y~~~~~~~~ 151 (464)
.|....+..+|+++++++++ .+++++++++++++..++.+++++|+. ++...+.|..+.....
T Consensus 70 ~y~~~~~~~~le~~~a~l~g----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~ 139 (465)
T d1ax4a_ 70 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 139 (465)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHC----------CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH
Confidence 57766677899999999984 468999999999999999998765543 3444444433333344
Q ss_pred cCCCcEEEEEecC--------CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCC-CCCCHHHHHHHHHHHhhCC
Q 037587 152 WRPGVEIVPIHCS--------SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLG-TAMTHQELNHLINFSKSKR 222 (464)
Q Consensus 152 ~~~g~~~~~v~~~--------~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG-~~~s~~~l~~i~~~~~~~~ 222 (464)
.. |..++.+... ....+.+|++.+++++++.. ...+.++++..++|..| ..+|.+++++|.++|++||
T Consensus 140 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 140 LN-GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp HT-TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhc--cccccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 44 7777765421 22346789999999998632 12455566666666554 5689999999999999999
Q ss_pred eEEEEecccccccc--C--CC-CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHH-HHHHH
Q 037587 223 IHIVSDEIYSGTVF--D--SP-SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNER-VVSAA 296 (464)
Q Consensus 223 ~~lI~Deay~~~~~--~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~-~~~~~ 296 (464)
+++|+|+++..... . .. .....+.....++. ..-..++..|.+|.. .|.+.|+++.++.. +....
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~d~~s~s~~k~~--~~~~~g~l~~~~~~~~~~~~ 287 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM-------YKYADALTMSAKKDP--LLNIGGLVAIRDNEEIFTLA 287 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH-------GGGCSEEEEETTSTT--CCSSCEEEEESSCHHHHHHH
T ss_pred CEEEEECcchhhhhcccccccccccccchhhhcccc-------ccccceeEeecccCc--ccccceeEeecchHHHHHhh
Confidence 99999999852110 0 00 00001222222211 001123344566654 56667998885432 22222
Q ss_pred HH----hccc---CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccc
Q 037587 297 TK----MSSF---GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLL 369 (464)
Q Consensus 297 ~~----~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~ 369 (464)
.. ...+ ...+.....++...+..... ..+. +...++.+++.+.|++.|+++.++.+++++.++.....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~-~~~~----~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~ 362 (465)
T d1ax4a_ 288 RQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYL----HYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLV 362 (465)
T ss_dssp HHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHH----HHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTC
T ss_pred hccccccccCCCcchhhHHHHHHHhhhhHHhhh-HHHH----HHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhc
Confidence 11 1111 12233333333332221110 1222 23344567789999999998888888778877765432
Q ss_pred ccCC--hhHHHHHHHHHHHhcCeEEeCCCCC--------C---CCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHhhCc
Q 037587 370 VSNT--FEAEKELWKKIIFEVGLNISPGSSC--------H---CNEPGWFRICFAN--ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 370 ~~~~--~~~~~~l~~~ll~~~gI~v~pg~~f--------~---~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.... ......+...++.+.||...+.... + ....+.+|+++.. .|+|+++.++++|++++++...
T Consensus 363 ~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~ 442 (465)
T d1ax4a_ 363 PQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFAT 442 (465)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred CCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2111 1122345566677889875422110 0 0123579998753 4899999999999999887764
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.73 E-value=2.5e-16 Score=152.25 Aligned_cols=297 Identities=13% Similarity=0.175 Sum_probs=183.5
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCc--EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEE
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNK--LVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVP 160 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~--i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~ 160 (464)
-..+.|+.++++++ ++++. +++|+|+|+++..++..+..+++.+++....+... ....... +.....
T Consensus 34 ~~~~~r~~l~~l~~--------~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 104 (361)
T d1m32a_ 34 VVEQIRQQLTALAT--------ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-GIAHHA 104 (361)
T ss_dssp THHHHHHHHHHHHC--------SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-TCCEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhh-hccccc
Confidence 35788888888886 55554 77888999999999999998888887777654321 1112223 445554
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
+....... .+.+....... ..++++++.+++-+|-||...+ +++|.++|+++|+++++|.+++- +..
T Consensus 105 ~~~~~~~~--~~~~~~~~~~~----~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~g~~~~vDa~qs~---G~~- 171 (361)
T d1m32a_ 105 YDCGEVAR--PDVQAIDAILN----ADPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSF---GGI- 171 (361)
T ss_dssp EECCTTSC--CCHHHHHHHHH----HCTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTT---TTS-
T ss_pred ccccccCC--ccchhhHHHHH----hccCccceEEEeeecccccchh---hhhhhhhhcccceeeEeeccccc---Ccc-
Confidence 44433222 22222222211 2358899999999999999986 66678889999999999999983 322
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHH-----------------HHH--hc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSA-----------------ATK--MS 300 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~-----------------~~~--~~ 300 (464)
+ ..+. ..+..+++.|..|.++ .+| +|+++.+++.+.+. ... ..
T Consensus 172 -~-~d~~-------------~~~~D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (361)
T d1m32a_ 172 -P-MDIA-------------ALHIDYLISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGK 234 (361)
T ss_dssp -C-CCTT-------------TTTCSEEEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTC
T ss_pred -c-cccc-------------ccccceEEeeecccccCCCC--ceEEEechhhhhhhccccccccccchhhhccccccccc
Confidence 1 2222 2266788899999984 346 67777743322110 000 01
Q ss_pred ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ccEEEEEecCcccccCChhHH
Q 037587 301 SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN---AGLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 301 ~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~f~~~~l~~~~~~~~~~~~ 377 (464)
...+.+.....++...+..... +.......++.+...+.+.+.++..|+....+. ++..+.+.+|+..... .
T Consensus 235 ~~~t~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~----~ 309 (361)
T d1m32a_ 235 WRFTSPTHTVLAFAQALKELAK-EGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYR----F 309 (361)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCC----H
T ss_pred cCCCCCchhhhHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCCC----H
Confidence 1123444444444444432111 112334445556666677777877776554321 2334556666533221 2
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEee-cCCHHHHHHHHHHHHHHH
Q 037587 378 KELWKKIIFEVGLNISPGSSCHCNEPGWFRICFA-NITEETLQVALQRIKVFA 429 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~~l~~~l 429 (464)
.++...| .++||.+.+|... .++.+||++. ..+++++++++++|+++|
T Consensus 310 ~~~~~~l-~~~gi~i~~G~~~---~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 310 SEFYRRL-KEQGFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHHHHHH-HHTTEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-HHCCcEEECCCcC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 2455555 6789999888643 4678999963 478999999999999875
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=2.1e-15 Score=145.10 Aligned_cols=208 Identities=18% Similarity=0.209 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~ 162 (464)
..|.+.||+..+ .+..++++++..|+..++.+++++||.|++....|++.... +... |+++..++
T Consensus 62 ~~LE~~la~LEg----------~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~-Gi~~~~~d 130 (392)
T d1gc0a_ 62 NLLEARMASLEG----------GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLRHVD 130 (392)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGG-TCEEEEEC
T ss_pred HHHHHHHHHHhC----------CcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccC-CcccccCC
Confidence 456666666543 45678899999999999999999999999999999876554 3444 88888876
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.. |++++++++++ ++++|++-+|.|||..+. ++++|+++|+++|+++|+|..|+.-.+-.+
T Consensus 131 ~~-------d~~~~~~ai~~------~t~lv~~Esp~NP~l~v~---Di~~i~~ia~~~g~~~vvDnT~atP~~~~P--- 191 (392)
T d1gc0a_ 131 MA-------DLQALEAAMTP------ATRVIYFESPANPNMHMA---DIAGVAKIARKHGATVVVDNTYCTPYLQRP--- 191 (392)
T ss_dssp TT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCC---CHHHHHHHHGGGTCEEEEECTTTHHHHCCG---
T ss_pred cc-------CHHHHHHhCCC------CCeEEEecccccceeeec---chHHHHHHHHhcCCEEEEecCccCccccCh---
Confidence 42 68899888764 899999999999999996 588899999999999999999974322111
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHH-HHHhcc--cCCCChHHHHHHHHHcC
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSA-ATKMSS--FGLVSSQTQYLLSRMLS 318 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~-~~~~~~--~~~~s~~~q~~~~~~l~ 318 (464)
.++ +..+++.|.+|.++ -..+=.|.++++++.+.+. +...+. -..+++.....+..-++
T Consensus 192 ----l~~-------------GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~ 254 (392)
T d1gc0a_ 192 ----LEL-------------GADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK 254 (392)
T ss_dssp ----GGG-------------TCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred ----HHh-------------CCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccc
Confidence 112 45688999999994 3446678888855544432 222222 23467777777777776
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.- ..+.++..++...+.+.|+++
T Consensus 255 TL-------~lRm~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 255 TL-------NLRMDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp TH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred cH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 63 344555566777888888876
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.72 E-value=6.7e-16 Score=146.73 Aligned_cols=343 Identities=15% Similarity=0.110 Sum_probs=211.1
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCC---CCC---cHHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQD---YHG---FPDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g---~~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
..|+|-..||..++. +.+++..... . .....||. +.| .+++.....++..+.++ +...
T Consensus 24 ~~l~LiaSEN~~S~~-v~~a~~S~l~-----n------kyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~----a~~a 87 (405)
T d1kl1a_ 24 AKIELIASENFVSRA-VMEAQGSVLT-----N------KYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG----AEHA 87 (405)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSGGG-----G------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC----CSEE
T ss_pred cCceEeccCCcCCHH-HHHHhcCccc-----C------cCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC----CCcc
Confidence 348888888877643 4444433210 0 00111221 233 23333333344555555 4555
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccC----CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR----PGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
+|-..+| +.++..++.+|++|||+|+..++..+++...-... ...+.+.++++++ .+.+|.+++++.+++.
T Consensus 88 nVqp~SG-s~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~--- 162 (405)
T d1kl1a_ 88 NVQPHSG-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLH--- 162 (405)
T ss_dssp ECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH---
T ss_pred eeeccCc-hHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchh-cccccHHHHHHHHHhh---
Confidence 6655555 55667788899999999999999888765442211 1457788888754 5689999999999885
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
+|++|++.....|- .++ ++++.++|.+.|.+++.|-++......+. .+++.... ..+
T Consensus 163 --kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g--~~~~P~~~--------------aDv 219 (405)
T d1kl1a_ 163 --RPKLIVAAASAYPR--IID---FAKFREIADEVGAYLMVDMAHIAGLVAAG--LHPNPVPY--------------AHF 219 (405)
T ss_dssp --CCSEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTT--SSCCSTTT--------------CSE
T ss_pred --CcceEEeccccccc--ccC---hHHHHHHHhhhCCEEecchhhHhhhhhhh--hcCChhhh--------------hhh
Confidence 89987776444443 333 56666677788999999999965433333 23332222 235
Q ss_pred EEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccC-CCChHHH--HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFG-LVSSQTQ--YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVS 343 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~-~~s~~~q--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (464)
+..|.+|+| +|-|-|.|.+. +.+.+.+.+...++ ..++... ++.+.++.. .+....+...+++.++.+.|.+
T Consensus 220 vt~tThKtl--rGPrgg~I~~~-~~~~~~i~~avfPg~qggp~~~~iAa~Aval~E--a~~~~fk~Ya~qvv~NAkaLa~ 294 (405)
T d1kl1a_ 220 VTTTTHKTL--RGPRGGMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE--ALQDDFKAYAKRVVDNAKRLAS 294 (405)
T ss_dssp EEEESSSTT--CCCSCEEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccccc--cCCCCceEEec-chhHHHHHhhhCcccccCcchhHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHH
Confidence 688999998 78889999985 55555554443332 2222211 111122211 1122234455566678888999
Q ss_pred HHHhCCCeeecC-CccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeec-----C
Q 037587 344 GLKVAGIRCLKS-NAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFAN-----I 413 (464)
Q Consensus 344 ~l~~~g~~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~-----~ 413 (464)
.|.+.|+++... ..+..+|+++...... ...+.++|++.||.+. |+..-.+..++.+||+... .
T Consensus 295 ~L~~~G~~vv~ggTd~H~vlvdl~~~~~~------g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~ 368 (405)
T d1kl1a_ 295 ALQNEGFTLVSGGTDNHLLLVDLRPQQLT------GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGF 368 (405)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECGGGTCC------HHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred HHhcCCceeecCCCccceeeccccccCCc------HHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCC
Confidence 999999998753 3456788998642111 1245667888999886 4432112234679999854 3
Q ss_pred CHHHHHHHHHHHHHHHHhhCc
Q 037587 414 TEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 414 ~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.++++.++.+.|.++++....
T Consensus 369 ~e~dm~~ia~~I~~~l~~~~~ 389 (405)
T d1kl1a_ 369 GLEEMDEIAAIIGLVLKNVGS 389 (405)
T ss_dssp CHHHHHHHHHHHHHHHTCTTC
T ss_pred CHHHHHHHHHHHHHHHhcCCc
Confidence 679999999999999976553
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=7.3e-16 Score=153.49 Aligned_cols=317 Identities=14% Similarity=0.101 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHH-HHHHHHHHh---cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTA-ANETLMFCL---ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~-al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~ 162 (464)
..+...+.+++.+.+|.+ .....++|+|+++ ++.+++.++ ..+++.|+++...|..+...+... |++++.++
T Consensus 93 ~~le~~~~~~~~~l~g~~---~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~-g~~~~~v~ 168 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVH---SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA-GFEPVVIE 168 (445)
T ss_dssp HHHHHHHHHHHHHHHTCT---TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCC---cccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHc-CCeeEEEE
Confidence 345666667766665521 2234566666665 444444433 356789999999999888888877 99988886
Q ss_pred cCC-CCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCC
Q 037587 163 CSS-SNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSS 241 (464)
Q Consensus 163 ~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~ 241 (464)
... ++.+.+|+++|++++.+.. ..++.+|+++.|+|++|.+- ++++|.++|+++|+++++|++|+.......
T Consensus 169 ~~~~~~~~~id~~~l~~~i~~~~--~~~~~~v~~~~~~~~~G~~~---~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~-- 241 (445)
T d3bc8a1 169 NVLEGDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRVPD---RLEELAVICANYDIPHVVNNAYGLQSSKCM-- 241 (445)
T ss_dssp CEEETTEEECCHHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHHHH--
T ss_pred eeccCcccccCHHHHHHHHHhcc--ccCeEEEEEeCCCCCCeeeh---hHHHHHHHHHHhCCcEEEEccchhhhhhcc--
Confidence 432 3568899999999997642 23678889999999999985 588899999999999999999975321111
Q ss_pred CccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHHHHH--HHcCC
Q 037587 242 SFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQYLLS--RMLSD 319 (464)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~~~~--~~l~~ 319 (464)
......... .+..++..|.+|.++.| ...|+++..+....+.+...............+.. ..+..
T Consensus 242 ---~~~~~~~~~--------~~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (445)
T d3bc8a1 242 ---HLIQQGARV--------GRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGC 309 (445)
T ss_dssp ---HHHHHHHHH--------SCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHH
T ss_pred ---ccchhccCc--------CCcceEEecCccccccC-CCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhh
Confidence 111111111 12346678999988633 34677877777666655544433333333222222 22221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH----HhCCCeeec-CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe-
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGL----KVAGIRCLK-SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS- 393 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~g~~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~- 393 (464)
.. .....+...+..+++.+.| ...|..+.. +......++.+........ ....++...| .+.||...
T Consensus 310 ~~-----~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~L-~~~gI~~~~ 382 (445)
T d3bc8a1 310 SG-----YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHD-KAVTQLGSML-FTRQVSGAR 382 (445)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSS-CHHHHHHHHH-HHTTCCSCE
T ss_pred hc-----chhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCC-CCHHHHHHHH-HHcCCCcce
Confidence 11 2222223333333344444 334554433 2333344455443222222 2223455544 46676311
Q ss_pred ---CCC----------CCCC----CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 394 ---PGS----------SCHC----NEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 394 ---pg~----------~f~~----~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
++. .|+. ....++|++++. .++|+++.++++|++++++.+
T Consensus 383 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~r 440 (445)
T d3bc8a1 383 AVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 440 (445)
T ss_dssp EECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 0111 113468998876 789999999999999998875
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.71 E-value=2e-16 Score=157.06 Aligned_cols=286 Identities=10% Similarity=0.101 Sum_probs=178.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCC-CCCcccCHHHHHHHHHHHh
Q 037587 108 DPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSS-SNGFRITISALENAYQQAQ 184 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~ 184 (464)
+.....+..|+++++..++.+.. .+++.|+++.-.|+.+...+... |++++.++... ++.+.+|+++|++.+++..
T Consensus 129 ~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~ 207 (434)
T d2z67a1 129 NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV-GMNMRLVETVLDGDRVYVPVEDIENAIKKEI 207 (434)
T ss_dssp CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT-TCEEEEECCEEETTEEECCHHHHHHHHHHHH
T ss_pred CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHh-CCcceEEEeecCCCccCCCHHHHHHHHHhhh
Confidence 44456666777777777776653 36899999999999888888776 99988876422 3457899999999998754
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
..+ ++.+|++++|++++|... ++++|.++|+++|+++++|++|+....... ....... ..+.
T Consensus 208 ~~~-~~~~v~~~~~~~~~g~~~---~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~-----~~~~~~~---------~~~~ 269 (434)
T d2z67a1 208 ELG-NRPCVLSTLTFFPPRNSD---DIVEIAKICENYDIPHIINGAYAIQNNYYL-----EKLKKAF---------KYRV 269 (434)
T ss_dssp HTT-CCEEEEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHHHH-----HHHHHHH---------TSCC
T ss_pred hcC-CceEEEeccCcCCCcccc---CHHHHHHHHHHhCCeEEEeccchhhhhhcc-----ccccccc---------cCCc
Confidence 333 566788899999999985 488899999999999999999974311000 1111111 1245
Q ss_pred EEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhcccCCCChHHHH--HHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Q 037587 265 IHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSFGLVSSQTQY--LLSRMLSDKKFTCNYMKENRKRLRKRKEMLV 342 (464)
Q Consensus 265 vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~~~s~~~q~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (464)
.+++.|++|.++ .+...|++...++...+...+............. +....+... ..+...+...+..+++.
T Consensus 270 D~~~~s~hK~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~-----g~~~~~~~~~~~a~~l~ 343 (434)
T d2z67a1 270 DAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSK-----NYLELVKNQKNSKKLLD 343 (434)
T ss_dssp SEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCccccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHH
Confidence 567889999886 3334577777777666655554443333333222 222222222 22333333344445555
Q ss_pred HHHHh----CCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe----CCCCCC-----CCCCCeEEEE
Q 037587 343 SGLKV----AGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS----PGSSCH-----CNEPGWFRIC 409 (464)
Q Consensus 343 ~~l~~----~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~----pg~~f~-----~~~~~~~Ris 409 (464)
+.|++ .|..+........+.+.+... ..++...| .+.||... +...++ ....+++|++
T Consensus 344 ~~L~~l~~~~g~~ll~~~~~~~~~~~~~~~--------~~~l~~~L-~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~ 414 (434)
T d2z67a1 344 ELLNDLSKKTGGKFLDVESPIASCISVNSD--------PVEIAAKL-YNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMN 414 (434)
T ss_dssp HHHHHHHHHSSCCBCCCCCSSEEEEECSSC--------HHHHHHHH-HHTTEESCEEECTTCHHHHTCSSCCSCCEEEEE
T ss_pred HHHHHhhhhcCceecCCCCCceeeeecCCC--------HHHHHHHH-HHcCCeeeehhhhccccCeeeecccCCCeEEEe
Confidence 55544 466665544322333333321 22455555 56788542 222111 1124689999
Q ss_pred eec-CCHHHHHHHHHHHHH
Q 037587 410 FAN-ITEETLQVALQRIKV 427 (464)
Q Consensus 410 ~~~-~~~e~l~~~l~~l~~ 427 (464)
++. .++|+++.++++|++
T Consensus 415 ~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 415 AAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp CCTTCCHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHhc
Confidence 876 799999999999986
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.71 E-value=2.6e-15 Score=144.48 Aligned_cols=196 Identities=16% Similarity=0.187 Sum_probs=143.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
.+..++++++..|+..++.+++++||.|+++...|.+.... +... |+++..++.. |++.+++++++
T Consensus 78 g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~-Gi~~~~vd~~-------d~~~~~~~i~~-- 147 (397)
T d1y4ia1 78 GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVRFVDAG-------KPEEIRAAMRP-- 147 (397)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHT-TCEEEEECTT-------SHHHHHHHCCT--
T ss_pred CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCC-ceEeeccCCC-------CHHHHHHhcCC--
Confidence 34578899999999999999999999999999999876554 3345 9999888643 67888888754
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
++++|++-+|.||+..+. ++++|+++|+++|+++|+|..++.-.+- . + ..+ +.
T Consensus 148 ----~Tklv~~Esp~NP~l~v~---Di~~i~~iA~~~gi~~vvDnT~atP~~~-~-----P-l~~-------------Ga 200 (397)
T d1y4ia1 148 ----ETKVVYIETPANPTLSLV---DIETVAGIAHQQGALLVVDNTFMSPYCQ-Q-----P-LQL-------------GA 200 (397)
T ss_dssp ----TEEEEEEESSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCTTTC-C-----G-GGG-------------TC
T ss_pred ----CCcEEEecCCcccceeec---ccHHHHHHhhcCCceEEecCcccCcccC-c-----c-hhc-------------CC
Confidence 899999999999999996 5778888999999999999998742111 1 1 112 45
Q ss_pred EEEEcCCCcCCC-CCccEEEEEEecCHHHHHH-HHHhccc--CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHH
Q 037587 265 IHIVYSLSKDFS-MPGFRVGMIYSNNERVVSA-ATKMSSF--GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEM 340 (464)
Q Consensus 265 vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~-~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (464)
.|+++|++|.++ -...=.|.++++++.+.+. +..++.. ..+++.....+..-|+. +.-+.++..++...
T Consensus 201 DivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T-------L~lRm~~~~~nA~~ 273 (397)
T d1y4ia1 201 DIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-------LGIRMERHCENALK 273 (397)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHH
T ss_pred CEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-------HHHHHHHHHHHHHH
Confidence 588999999984 3345467777765555432 2222222 24677777777776665 33345556667788
Q ss_pred HHHHHHhC
Q 037587 341 LVSGLKVA 348 (464)
Q Consensus 341 l~~~l~~~ 348 (464)
+.+.|+++
T Consensus 274 lA~~L~~h 281 (397)
T d1y4ia1 274 IARFLEGH 281 (397)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 88999887
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.4e-15 Score=148.52 Aligned_cols=367 Identities=12% Similarity=0.017 Sum_probs=204.3
Q ss_pred cCCCCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHc
Q 037587 26 NNPYDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIR 101 (464)
Q Consensus 26 ~~~y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~ 101 (464)
...|..+.+...+||+..+ .+.+. .|.+.+++.++. .............+....+|+.+.+..
T Consensus 30 ~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~ 96 (425)
T d1sffa_ 30 ENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQL-------------KKLSHTCFQVLAYEPYLELCEIMNQKV 96 (425)
T ss_dssp EBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHT-------------TTCSCCCTTTEECHHHHHHHHHHHHHS
T ss_pred ecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHH-------------hhcCCcccccccCcHHHHHHHHHHhhh
Confidence 3446666667889999875 44554 466777776642 221111111222455566677766543
Q ss_pred CCCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC-------------cEEEEEecC--
Q 037587 102 GNKVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG-------------VEIVPIHCS-- 164 (464)
Q Consensus 102 ~~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g-------------~~~~~v~~~-- 164 (464)
.. -..+.+++++++++++..+++... ....+|+...-+|++....+....| ......+.+
T Consensus 97 p~---~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (425)
T d1sffa_ 97 PG---DFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCP 173 (425)
T ss_dssp SC---SSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBG
T ss_pred hh---cccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccc
Confidence 20 113578999999999999988742 2336788888888775433221101 111222211
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
..+............+........++.+|++ .| ....|. ..+++.++.|.++|+++|+++|.||++.++.-.+. .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~--~ 250 (425)
T d1sffa_ 174 LHGISEDDAIASIHRIFKNDAAPEDIAAIVI-EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--L 250 (425)
T ss_dssp GGTBCHHHHHHHHHHHHHHTCCGGGEEEEEE-CSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S
T ss_pred cccccchhhHHHHHHHHHhcccccceEEEEe-cCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch--h
Confidence 1111111111112222222222345665555 45 334554 56788899999999999999999999997421122 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHHcCCc
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRMLSDK 320 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~ 320 (464)
.. .+... ..+. +-+++|.+| .|+.+|.+++++ .+.+.+.... ..+..++++.+++.+.|+--
T Consensus 251 -~a-~~~~g---------v~PD---i~~~gK~l~-gG~P~~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i 314 (425)
T d1sffa_ 251 -FA-MEQMG---------VAPD---LTTFAKSIA-GGFPLAGVTGRA-EVMDAVAPGGLGGTYAGNPIACVAALEVLKVF 314 (425)
T ss_dssp -SG-GGGTT---------SCCS---EEEECGGGG-TSSCCEEEEEEH-HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH
T ss_pred -hH-HHhcC---------CCcc---ceecccccC-CCcceEEEEEcH-HHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 11 11111 1122 447999998 899999999844 4443332221 12335677777777666532
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccc--cCChhHHHHHHHHHHHhcCeEEeCCCCC
Q 037587 321 KFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLV--SNTFEAEKELWKKIIFEVGLNISPGSSC 398 (464)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~--~~~~~~~~~l~~~ll~~~gI~v~pg~~f 398 (464)
+- .+..++....-...++.+.+.++++++......-|+++.+.+..... ..+......+...++ ++||++.++...
T Consensus 315 ~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~g~~ 392 (425)
T d1sffa_ 315 EQ-ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPY 392 (425)
T ss_dssp HH-TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTT
T ss_pred HH-hhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHH-HCCCEEeccCCC
Confidence 11 11122222222333334455555555433222334566676643221 112223335666665 679999876432
Q ss_pred CCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 399 HCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 399 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.+.+|++.+. ++++++++++++|++++++.+
T Consensus 393 ----~n~i~~~PpL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 393 ----YNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp ----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4579999766 799999999999999998865
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.69 E-value=8.6e-15 Score=140.44 Aligned_cols=195 Identities=14% Similarity=0.183 Sum_probs=140.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
.+..++++++..|+.. +.+++++||.|++..+.|.+....+ ... |+++..++.. +++.+++++.+
T Consensus 64 ~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~-gi~~~~~d~~-------~~~~~~~ai~~-- 132 (380)
T d1ibja_ 64 ADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTT-------KLDEVAAAIGP-- 132 (380)
T ss_dssp CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGG-TCEEEEECTT-------SHHHHHHHCCS--
T ss_pred CceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccc-cccccccCcc-------hHHHHHHHhcc--
Confidence 3456788888899974 5678999999999999998765543 334 8888777632 67888877644
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
++++|++-.|.||+..+.+ +++|+++|+++|+++|+|..++...+- . + + ..+.
T Consensus 133 ----~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~-~-----P---l-----------~~Ga 185 (380)
T d1ibja_ 133 ----QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS-R-----P---L-----------ELGA 185 (380)
T ss_dssp ----SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC-C-----G---G-----------GTTC
T ss_pred ----CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccccc-c-----c---c-----------ccCC
Confidence 8999999999999999975 777888888999999999998743221 1 1 1 1255
Q ss_pred EEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhcc-cC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHH
Q 037587 265 IHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSS-FG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEML 341 (464)
Q Consensus 265 vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~-~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 341 (464)
.++++|++|.++ -...=.|.++.+++.+.+.+..... .+ ..++.....+..-++. +..+.++..++...+
T Consensus 186 DiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~lRm~~~~~nA~~l 258 (380)
T d1ibja_ 186 DIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT-------MALRIEKQQENARKI 258 (380)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHH
T ss_pred CEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh-------hhhhHHHHHHHHHHH
Confidence 688999999984 2334467777766666554443332 22 3667777777777766 334455566677788
Q ss_pred HHHHHhC
Q 037587 342 VSGLKVA 348 (464)
Q Consensus 342 ~~~l~~~ 348 (464)
.+.|+++
T Consensus 259 A~~L~~h 265 (380)
T d1ibja_ 259 AMYLSSH 265 (380)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 8889876
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.9e-15 Score=144.34 Aligned_cols=342 Identities=13% Similarity=0.069 Sum_probs=210.7
Q ss_pred ceEEeecccccccHHHHHHHHHhhhhhHHhhhcccccccccccCCC---CCCc---HHHHHHHHHHHHHHcCCCCCCCCC
Q 037587 37 GIIQMGLAENQLSFDLLESWLASNQEAVELKRNGESLFRELALFQD---YHGF---PDAKKELVKLMARIRGNKVKFDPN 110 (464)
Q Consensus 37 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~---~~lr~~ia~~~~~~~~~~~~~~~~ 110 (464)
..|+|-..||..++. +.+++..... . .....||. +.|. +++.....++..+.++ +...
T Consensus 27 ~~i~LiaSEN~~S~~-v~~a~~S~l~-----n------kYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~----a~~a 90 (416)
T d1dfoa_ 27 EHIELIASENYTSPR-VMQAQGSQLT-----N------KYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG----ADYA 90 (416)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSGGG-----G------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEE
T ss_pred cCceEecCcccCCHH-HHHHhcCccc-----C------cccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC----CCcc
Confidence 348888888877653 4444333210 0 00111221 2332 3333333344455555 4445
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccC----CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhc
Q 037587 111 KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR----PGVEIVPIHCSSSNGFRITISALENAYQQAQTL 186 (464)
Q Consensus 111 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 186 (464)
+|-. .+++.|+..++.++++|||+|+..++.++++....... ...+.+.+++++ ...+|.+++++..++.
T Consensus 91 nVqp-~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~--~~~IDyd~l~~~a~~~--- 164 (416)
T d1dfoa_ 91 NVQP-HSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA--TGHIDYADLEKQAKEH--- 164 (416)
T ss_dssp ECCC-SSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS--SSSBCHHHHHHHHHHH---
T ss_pred eeec-ccCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCC--ccCccHHHHHHHHHHh---
Confidence 5555 55666778888899999999999999998876543221 034677777764 3359999999998875
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEE
Q 037587 187 NLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIH 266 (464)
Q Consensus 187 ~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 266 (464)
++++|++.....| ..++ .+++.++|.+.|.+++.|.++......+. .+++.... ..+
T Consensus 165 --kPklIi~G~S~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g--~~~sP~~~--------------aDv 221 (416)
T d1dfoa_ 165 --KPKMIIGGFSAYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAG--VYPNPVPH--------------AHV 221 (416)
T ss_dssp --CCSEEEEECSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHT--SSCCCTTT--------------SSE
T ss_pred --ccceEEecccccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceecc--ccCCcccc--------------cce
Confidence 8998887644433 3444 55666677789999999999965433333 22332222 237
Q ss_pred EEcCCCcCCCCCccEEEEEEec--CHHHHHHHHHhcccC-CCChHHHH--HHHHHcCCchhhHHHHHHHHHHHHHHHHHH
Q 037587 267 IVYSLSKDFSMPGFRVGMIYSN--NERVVSAATKMSSFG-LVSSQTQY--LLSRMLSDKKFTCNYMKENRKRLRKRKEML 341 (464)
Q Consensus 267 ~l~S~SK~~g~~GlRiG~l~~~--~~~~~~~~~~~~~~~-~~s~~~q~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 341 (464)
+..|++|+| +|-|-|.|.++ .+.+.+.+.+...++ ..++.... +.+.++.. ......+...+++.++.+.|
T Consensus 222 vt~tThKtl--rGPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~E--a~~~~fk~Y~~qvv~NA~~L 297 (416)
T d1dfoa_ 222 VTTTTHKTL--AGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKE--AMEPEFKTYQQQVAKNAKAM 297 (416)
T ss_dssp EEEESSSTT--CCCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhcc--cCCCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHH
Confidence 789999998 78888999985 345555554433222 22222111 11122221 11112344455666788889
Q ss_pred HHHHHhCCCeeecC-CccEEEEEecCccc-ccCChhHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeec---
Q 037587 342 VSGLKVAGIRCLKS-NAGLFCWVDMRHLL-VSNTFEAEKELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFAN--- 412 (464)
Q Consensus 342 ~~~l~~~g~~~~~~-~~g~f~~~~l~~~~-~~~~~~~~~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~--- 412 (464)
.+.|.+.|+++... ..+..+++++.... .+ ..+..+|++.||.+. |+..-.+..++.+||+...
T Consensus 298 a~~L~~~G~~iv~ggTdnHlvlvdl~~~~~~G-------~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~Tt 370 (416)
T d1dfoa_ 298 VEVFLERGYKVVSGGTDNHLFLVDLVDKNLTG-------KEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITR 370 (416)
T ss_dssp HHHHHHTTCEEGGGSCSSSEEEEECGGGTCCH-------HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHH
T ss_pred HHHHHhCCcccccCCCCCceeEEEecccCCCH-------HHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHh
Confidence 99999999998742 33457789986421 11 246677889999985 4332112235679999854
Q ss_pred --CCHHHHHHHHHHHHHHHHhhCc
Q 037587 413 --ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 413 --~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
..+++++++.+.|.++++..+.
T Consensus 371 rG~~e~d~~~iA~~I~~~l~~~~~ 394 (416)
T d1dfoa_ 371 RGFKEAEAKELAGWMCDVLDSIND 394 (416)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCc
Confidence 3679999999999999987664
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.69 E-value=1.9e-15 Score=147.50 Aligned_cols=298 Identities=13% Similarity=0.132 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh--cccCCCcEEEEEec
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPN-KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD--LKWRPGVEIVPIHC 163 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--~~~~~g~~~~~v~~ 163 (464)
.+.|+.|+++++ ++.. .|+++.|+|++++.++..+..+|+.+++....+.+.... .... +...+.+..
T Consensus 53 ~~~r~~L~~ll~--------~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 123 (388)
T d2ch1a1 53 DEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERY-GADVRTIEG 123 (388)
T ss_dssp HHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhhhh-ccccccccc
Confidence 455555666654 4444 466677899999999999999999999887776443222 3334 777777776
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCc
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSF 243 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~ 243 (464)
.+ +...+.+..++..... +++++++++-+|.||...+. +++.++|++++.++++|.+.+ ++.. +
T Consensus 124 ~~--~~~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~~~~---~~i~~~~~~~~~~~~vD~~ss---~g~~--p- 187 (388)
T d2ch1a1 124 PP--DRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQPL---EGVGQICHQHDCLLIVDAVAS---LCGV--P- 187 (388)
T ss_dssp CT--TSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCC---TTHHHHHHHTTCEEEEECTTT---BTTB--C-
T ss_pred cc--ccccchhhhhhhhccC-----Ccceeeeeecccccccccch---hhhcchhccccceeeeeeeec---cccc--c-
Confidence 54 2345666666666542 78889999999999999875 456677789999999999997 4433 1
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHh-----------------------
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKM----------------------- 299 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~----------------------- 299 (464)
..+. ..+..+++.|-.|.++ .+| +|+++.++..+.......
T Consensus 188 id~~-------------~~~~d~~~~s~~K~~~gp~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (388)
T d2ch1a1 188 FYMD-------------KWEIDAVYTGAQKVLGAPPG--ITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEP 252 (388)
T ss_dssp CCTT-------------TTTCCEEECCCC-CCCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSC
T ss_pred cchh-------------ccCceEEEEccccccCCCCe--EEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccc
Confidence 2211 3366788899999884 345 677777444333221100
Q ss_pred -cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecC----CccEEEEEecCcccccCCh
Q 037587 300 -SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKS----NAGLFCWVDMRHLLVSNTF 374 (464)
Q Consensus 300 -~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~----~~g~f~~~~l~~~~~~~~~ 374 (464)
..+++.+.....++..++.... ........+..+.........+...+.....+ .++..+.+.+|+..+
T Consensus 253 ~~~~~t~~~~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~---- 326 (388)
T d2ch1a1 253 KRYHHTVASNLIFALREALAQIA--EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVD---- 326 (388)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC----
T ss_pred cccCccchHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCC----
Confidence 0111222333333333332211 11122233333334344455555444433321 123356677775433
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE-eec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 375 EAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC-FAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris-~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
..++...|++++||.|.+|... ...+.|||+ ++. .++|+++.++++|+++|++.++
T Consensus 327 --~~~l~~~l~~~~gI~v~~G~~~--~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~ 384 (388)
T d2ch1a1 327 --WWKVSQYAMNNFSLEVQGGLGP--TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 384 (388)
T ss_dssp --HHHHHHHHHHHHCBCCBCCCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHhhcCCEEEeCCCcc--ccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 2257778878889999988642 245689999 665 4689999999999999999775
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.8e-14 Score=138.24 Aligned_cols=208 Identities=20% Similarity=0.237 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~ 162 (464)
..|.+.||+.-+ .+..++++++..|+..++.+++++||.|++....|.+.... .... |..+..+.
T Consensus 53 ~~le~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~-g~~~~~~d 121 (384)
T d1cs1a_ 53 DVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG-CYRVLFVD 121 (384)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTT-SCEEEEEC
T ss_pred HHHHHHHHHHhC----------CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhccc-cccccccc
Confidence 455555655543 45688999999999999999999999999999999765433 3333 77776665
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
. .|.+.+++.+.+ ++++|++-+|.|||..+.+ +++|+++|+++|+++|+|..++...+. .
T Consensus 122 ~-------~d~~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~-~--- 181 (384)
T d1cs1a_ 122 Q-------GDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ-N--- 181 (384)
T ss_dssp T-------TCHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C---
T ss_pred C-------CCHHHHHhhccc------cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcccc-c---
Confidence 3 367888888875 8999999999999999975 777888899999999999998632221 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHh-cccC-CCChHHHHHHHHHcCC
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKM-SSFG-LVSSQTQYLLSRMLSD 319 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~-~~~~-~~s~~~q~~~~~~l~~ 319 (464)
+ ..+ +..|+++|.+|.++ -..+=.|.++++++.+.+.+... ...+ ..++.....+..-|+.
T Consensus 182 --P-l~~-------------GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T 245 (384)
T d1cs1a_ 182 --P-LAL-------------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT 245 (384)
T ss_dssp --G-GGG-------------TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT
T ss_pred --c-ccc-------------CCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch
Confidence 1 112 55688999999994 33345677888776665544332 2222 3667777776666665
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
- .-+.++..++...+.+.|+.+
T Consensus 246 L-------~lRm~~~~~nA~~lA~~L~~h 267 (384)
T d1cs1a_ 246 L-------VPRMELAQRNAQAIVKYLQTQ 267 (384)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHTTC
T ss_pred h-------HHHHHHHHHHHHHHHHhcccC
Confidence 3 334455566778888999876
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.67 E-value=3.9e-16 Score=153.36 Aligned_cols=287 Identities=10% Similarity=0.030 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh------cCCCCeEEEcCCCCCChhhhcccCCCcEEEE
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL------ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVP 160 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l------~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~ 160 (464)
.++|+.+|++++ +++++|++|+++|+++..++... ..+|+.|++.+-.+.......... +.++..
T Consensus 73 e~~R~~iA~llg--------a~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~ 143 (404)
T d1qz9a_ 73 ERLGNRLATLIG--------ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG-LADMLQ 143 (404)
T ss_dssp HHHHHHHHTTTT--------CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH-HHHHHC
T ss_pred HHHHHHHHHHhC--------CCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhh-hheeee
Confidence 467888888876 89999999999999998876532 357888888877765443332222 222222
Q ss_pred EecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 161 IHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 161 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
++.+. ....+++.+++++.+ ++++|++++.+|.||..+| +++|+++|+++++.+++|.+++- +..
T Consensus 144 ~~~~~--~~~~~~~~~~~~i~~------~T~lV~i~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~---g~~- 208 (404)
T d1qz9a_ 144 QGYTL--RLVDSPEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA---GAV- 208 (404)
T ss_dssp SSCEE--EEESSGGGHHHHCST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT---TTS-
T ss_pred eceec--cccccchhHHHhcCC------CceEEEEecccccccceec---HHHHhccccccccceeEEeeccc---ccc-
Confidence 22211 123466777777654 8999999999999999987 66688888899999999999973 322
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh---------------------
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--------------------- 299 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--------------------- 299 (464)
+ ..+..+ +..+++.|.+|.++.+.--+|+++.++... ..+...
T Consensus 209 -~-~~~~~~-------------~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (404)
T d1qz9a_ 209 -P-VDLHQA-------------GADYAIGCTYKYLNGGPGSQAFVWVSPQLC-DLVPQPLSGWFGHSRQFAMEPRYEPSN 272 (404)
T ss_dssp -C-CCHHHH-------------TCSEEEECSSSTTCCCTTCCCEEEECTTTT-TTSCCSCCCGGGBCTTSCCCSSCCBCS
T ss_pred -c-cccccc-------------cceEEEEechhhcccCCceEEEEEechhhh-hhCCccccccCCccccccccccccccc
Confidence 1 232222 455678899998753333457777644322 111100
Q ss_pred ----cccCCCChHHHH---HHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH-hCCCeeecCC-----ccEEEEEecC
Q 037587 300 ----SSFGLVSSQTQY---LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLK-VAGIRCLKSN-----AGLFCWVDMR 366 (464)
Q Consensus 300 ----~~~~~~s~~~q~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-----~g~f~~~~l~ 366 (464)
......+..... .....+.... ...+++....+......+.+.+. ..|++++.|. ++ ++.+..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~-~vsf~~~ 349 (404)
T d1qz9a_ 273 GIARYLCGTQPITSLAMVECGLDVFAQTD--MASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS-HVSFEHP 349 (404)
T ss_dssp SGGGGCCSCCCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCS-EEEEECT
T ss_pred cchhhhhhhccchhHHHHHHHHHHHHHhh--HHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceee-EEEEecC
Confidence 000112222222 2223333322 22233333333333333444443 3477776432 34 4555554
Q ss_pred cccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEee-c-CCHHHHHHHHHHHHHHHHhh
Q 037587 367 HLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFA-N-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 367 ~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~-~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+ ..++.+.| .++||.+.. ..++.+|||++ . .|++|++++++.|++++++.
T Consensus 350 ~---------~~~v~~~L-~~~gi~~~~------r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 350 E---------GYAVIQAL-IDRGVIGDY------REPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp T---------HHHHHHHH-HTTTEECEE------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred C---------HHHHHHHH-HHCCCEEee------cCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 2 12355554 678997531 12578999996 3 78999999999999999864
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=2.4e-15 Score=146.16 Aligned_cols=288 Identities=11% Similarity=0.127 Sum_probs=182.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~ 164 (464)
..+|.+.+|++++ .++++.++++|.|+.+++.++ +++||.|+++..+|......+... |.+++.++++
T Consensus 33 v~~~E~~la~~~g----------~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~-g~~pv~~d~~ 101 (376)
T d1mdoa_ 33 NQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLL-GANPVMVDVD 101 (376)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhcc-ccceeeeccc
Confidence 5788888888885 346788888899999999998 899999999999999988888877 9999999988
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
+ +.+.+|++.|++++.+ ++++|++++ ..|... ++++|.++|+++|+++|+|++++....-.. .
T Consensus 102 ~-~~~~~d~~~l~~~i~~------~tkaIi~~h---~~G~~~---~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~----~ 164 (376)
T d1mdoa_ 102 R-DTLMVTPEHIEAAITP------QTKAIIPVH---YAGAPA---DLDAIYALGERYGIPVIEDAAHATGTSYKG----R 164 (376)
T ss_dssp T-TTCCBCHHHHHHHCCT------TEEEECCBC---GGGCCC---CHHHHHHHHHHHTCCBCEECTTCTTCEETT----E
T ss_pred c-cccCCCHHHHHHhcCC------CCeEEEEeC---CCCCcc---chhHHHHHHHhcCceEEeccchhccCeeCC----e
Confidence 6 4678999999998864 899988774 578765 466788888899999999999973211111 0
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCC--CcCCCCCccEEEEEEecCHHHHHHHHHhcccC-------------------
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSL--SKDFSMPGFRVGMIYSNNERVVSAATKMSSFG------------------- 303 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~--SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~------------------- 303 (464)
.. . ..+. .+.|| +|.++. | ..|.++++++.+.+.++.+...+
T Consensus 165 ~~----g---------~~g~--~~~Sf~~~K~l~~-g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (376)
T d1mdoa_ 165 HI----G---------ARGT--AIFSFHAIKNITC-A-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEV 227 (376)
T ss_dssp ET----T---------SSSE--EEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEE
T ss_pred ec----c---------cccC--ccccCCCcCCCCC-C-CCCEEEEechhHHHHHHhhcccCCcccccccccccccccccc
Confidence 10 0 1132 33455 688863 3 35888888888777665543221
Q ss_pred -------CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-eeecCCc----cEEEE-EecCcccc
Q 037587 304 -------LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGI-RCLKSNA----GLFCW-VDMRHLLV 370 (464)
Q Consensus 304 -------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~~~~----g~f~~-~~l~~~~~ 370 (464)
.++....+.+..-|.. +.+..+..++....+.+.|.+... .+..... .++.+ +.+.....
T Consensus 228 ~~~g~n~~~~~~~Aai~~~qL~~-------~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (376)
T d1mdoa_ 228 LAPGYKYNLPDLNAAIALAQLQK-------LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARC 300 (376)
T ss_dssp SSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHH
T ss_pred hhcccccccchhhhhhhhhhhhh-------hhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccc
Confidence 1222222222222222 223333344555667777776633 2222111 11111 22221111
Q ss_pred cCChhHHHHHHHHHHHhcCeEEeCCCCC-----------CCCC--------CCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 371 SNTFEAEKELWKKIIFEVGLNISPGSSC-----------HCNE--------PGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 371 ~~~~~~~~~l~~~ll~~~gI~v~pg~~f-----------~~~~--------~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
... ..++.+.| +++||.+++.... .... ...+.|.+.. +++++++.+++.|++++
T Consensus 301 ~~~---Rd~l~~~L-~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 301 GIT---RDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp SSC---HHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hhh---HHHHHHHH-HHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 100 11466665 6789988753210 0000 2347775554 68999999999999875
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.66 E-value=9e-14 Score=133.77 Aligned_cols=208 Identities=16% Similarity=0.202 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~ 162 (464)
..|.+.||+..+ .+..++++++..|+..++.+++++||.|++....|++.... .... |+++..++
T Consensus 70 ~~LE~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~-gi~~~~~~ 138 (398)
T d1qgna_ 70 VVLEEKISALEG----------AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATVID 138 (398)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEEC
T ss_pred HHHHHHHHHHhC----------CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccc-cccccccc
Confidence 456666666543 45688999999999999999999999999999999876544 3344 88887775
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.. +.+..++.+.. +++++|++-+|.|||..+.+ +++|+++|+++|+++|+|..++...+-.+
T Consensus 139 ~~-------~~~~~~~~~~~-----~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~P--- 200 (398)
T d1qgna_ 139 PA-------DVGALELALNQ-----KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQKA--- 200 (398)
T ss_dssp SS-------CHHHHHHHHHH-----SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCT---
T ss_pred cc-------chhhhhhhhcc-----ccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCCc---
Confidence 32 34444443332 38999999999999999965 78889999999999999999863222111
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC-ccEEEEEEecCHHHHHHHHHh-cccC-CCChHHHHHHHHHcCC
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP-GFRVGMIYSNNERVVSAATKM-SSFG-LVSSQTQYLLSRMLSD 319 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~-GlRiG~l~~~~~~~~~~~~~~-~~~~-~~s~~~q~~~~~~l~~ 319 (464)
+ ..+..+++.|++|.+|=. .+=.|.+.. ++.....++.. ..++ ..++.....+..-++.
T Consensus 201 ------l-----------~~GaDiVihS~TKy~~Ghsdv~~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T 262 (398)
T d1qgna_ 201 ------L-----------ALGADLVLHSATKFLGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT 262 (398)
T ss_dssp ------T-----------TTTCSEEEECTTTTTTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG
T ss_pred ------h-----------hhCCCEEEEechhhcCcccceeehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH
Confidence 1 124568899999998523 333466665 44444433332 2222 3667777766666654
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 320 KKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
+..+.++..++...+.+.|+++
T Consensus 263 -------L~lRm~~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 263 -------LHLRVQQQNSTALRMAEILEAH 284 (398)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhC
Confidence 3445556667778888899886
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.66 E-value=2e-15 Score=146.68 Aligned_cols=295 Identities=13% Similarity=0.137 Sum_probs=183.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChh--hhcccCCCcEEEEEe
Q 037587 86 FPDAKKELVKLMARIRGNKVKFD-PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFD--RDLKWRPGVEIVPIH 162 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~-~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~~g~~~~~v~ 162 (464)
..+.|+.++++++ ++ ...|++++|++++++.++..+..+|+++++..-.+.... ...... +.....+.
T Consensus 53 ~~~~r~~l~~ll~--------~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 123 (377)
T d1vjoa_ 53 MDEIQSLLRYVWQ--------TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRY-GADVRTIS 123 (377)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhhh-cccccccc
Confidence 3455556666654 43 346778888999999999999999999998887764322 122223 55555555
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
..... ..+.+..+..... .+++++.+++-+|.||...+ ++++.++|+++|.++++|.+++ ++.. +
T Consensus 124 ~~~~~--~~~~~~~~~~~~~-----~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~g~~~~vDa~~~---~g~~--~ 188 (377)
T d1vjoa_ 124 KPWGE--VFSLEELRTALET-----HRPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS---LGGV--P 188 (377)
T ss_dssp CCTTC--CCCHHHHHHHHHH-----HCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT---TTTS--C
T ss_pred cCCCC--cccchhhhhhhhc-----Ccceeeeeeeeeccceeeec---hhhhhhhhhhccceEEEecchh---hhhh--h
Confidence 43322 2445555554443 27788888888999999976 6667888889999999999997 3322 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc---------------------c
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS---------------------S 301 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~---------------------~ 301 (464)
.++. ..+..+++.|..|.++.++ .+|+++..+. ..+...... .
T Consensus 189 -~~~~-------------~~~~d~~~~s~~K~~~gp~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (377)
T d1vjoa_ 189 -IFLD-------------AWGVDLAYSCSQKGLGCSP-GASPFTMSSR-AIEKLQRRRTKVANWYLDMNLLGKYWGSERV 252 (377)
T ss_dssp -CCTT-------------TTTCSEEECCSSSTTCSCS-SCEEEEECHH-HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCC
T ss_pred -hccc-------------ccccceeeecccccccCCC-EEEEecchhh-HHhhhhccCCCCcceeeccchhhhccCcccc
Confidence 1211 2356677889999875333 3566666443 333222110 0
Q ss_pred cC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---ccEEEEEecCcccccCChhHH
Q 037587 302 FG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSN---AGLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 302 ~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~f~~~~l~~~~~~~~~~~~ 377 (464)
.. +.+.....++..+..... ....+...+..+++...+.+.+...++....+. ....+.+.+|+... .
T Consensus 253 ~~~~~~~~~~~~l~~~~~~~~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~~------~ 324 (377)
T d1vjoa_ 253 YHHTAPINLYYALREALRLIA--QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVD------G 324 (377)
T ss_dssp CCSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCC------H
T ss_pred cccccceechhhhHHHHhhhh--hcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCCC------H
Confidence 11 122222222222221111 222455566677777888888888776554221 22345566665322 2
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE-eec-CCHHHHHHHHHHHHHHHH
Q 037587 378 KELWKKIIFEVGLNISPGSSCHCNEPGWFRIC-FAN-ITEETLQVALQRIKVFAQ 430 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris-~~~-~~~e~l~~~l~~l~~~l~ 430 (464)
.+++..|++++||.+..|... ...+.|||+ ++. .++|++++++++|+++++
T Consensus 325 ~~l~~~L~~~~gI~v~~G~~~--~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 325 KAVARRLLNEHNIEVGGGLGE--LAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp HHHHHHHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCEEEecCccc--ccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 357788888889999887643 245789999 464 478999999999999874
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=1e-14 Score=142.02 Aligned_cols=300 Identities=13% Similarity=0.112 Sum_probs=182.2
Q ss_pred HHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEcCCCCCCh--hhhcccCCCcEEEEEecCCC
Q 037587 92 ELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA---DPGDAFLLPTPYYPGF--DRDLKWRPGVEIVPIHCSSS 166 (464)
Q Consensus 92 ~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~v~~~~~ 166 (464)
.+.+.+.+.++...+.+++.|++|+|+|++++.++..++ ++||+|++....+... ...++.. |..+..+...+
T Consensus 40 ~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 117 (382)
T d2bkwa1 40 RVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSY-GAQVDVVRPLK- 117 (382)
T ss_dssp HHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHT-TCEEEEECCSS-
T ss_pred HHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccc-ccccccccccC-
Confidence 333444444442233567789999999999999999986 5799999988765432 2223444 77766665432
Q ss_pred CCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccch
Q 037587 167 NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISI 246 (464)
Q Consensus 167 ~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~ 246 (464)
.+...+.+.+++.+.+ .+++++++++.+|.||...+.+.+.+++. ++.+++++++|.+.+ ++.. + .++
T Consensus 118 ~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~tg~~~~~~~~~~~~~-~~~~~~~~~vDa~qs---~g~~--p-id~ 185 (382)
T d2bkwa1 118 IGESVPLELITEKLSQ-----NSYGAVTVTHVDTSTAVLSDLKAISQAIK-QTSPETFFVVDAVCS---IGCE--E-FEF 185 (382)
T ss_dssp TTSCCCHHHHHHHHHH-----SCCSEEEEESEETTTTEECCHHHHHHHHH-HHCTTSEEEEECTTT---TTTS--C-CCT
T ss_pred CCCccchhHHHHHhhh-----ccchheeeeeccccccccccchhhhhhcc-ccccceeeeeecccc---cccc--c-ccc
Confidence 3445678888887765 37888999999999999998776655433 334579999999997 4433 1 221
Q ss_pred hhhhhccCcCCCCCCCCcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHHHHH----------------------h----
Q 037587 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSAATK----------------------M---- 299 (464)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~~~~----------------------~---- 299 (464)
. .++..+++.|-.|.+ |.+| +|+++.+++.+...... .
T Consensus 186 ~-------------~~giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (382)
T d2bkwa1 186 D-------------EWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGK 250 (382)
T ss_dssp T-------------TTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTC
T ss_pred c-------------ccCeeEEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccc
Confidence 1 235667889999998 6667 78888855443221100 0
Q ss_pred -cccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee---cCC--ccEEEEEecCcccccC
Q 037587 300 -SSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL---KSN--AGLFCWVDMRHLLVSN 372 (464)
Q Consensus 300 -~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~---~~~--~g~f~~~~l~~~~~~~ 372 (464)
..+++++.....++..+|+.- ..+-.+...++.++..+++.+.+... ++... +.. ....+.+.+++.
T Consensus 251 ~~~~~Tp~~~~i~al~~aL~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~---- 324 (382)
T d2bkwa1 251 GAYFATPPVQLINSLDVALKEI--LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADP---- 324 (382)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCH----
T ss_pred cccccCCcHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCCH----
Confidence 112334444445555555421 12224444455556666777777653 33322 211 112334555532
Q ss_pred ChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE-eec-CCHHHHHHHHHHHHHHHHhhC
Q 037587 373 TFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRIC-FAN-ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 373 ~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris-~~~-~~~e~l~~~l~~l~~~l~~~~ 433 (464)
.++. .+|+++||.|..|.... ...+.|||+ ++. .++++++.+++.|..+.+.+|
T Consensus 325 -----~~~~-~~L~~~gi~i~~G~~~~-~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 325 -----PDVI-AFLKSHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp -----HHHH-HHHHHTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred -----HHHH-HHHHHCCeEEECCCChh-hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 1343 44578999999875421 235689999 665 346667777777766555544
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=2e-14 Score=137.87 Aligned_cols=278 Identities=13% Similarity=0.079 Sum_probs=177.1
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 107 FDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
.+.+.+++++|+|++++.++..++.+|++|++...++.+ +...++.. |..+..+..+... .++++...
T Consensus 48 ~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~-~~~~~~~~~~~g~--~~~~~~~~------- 117 (348)
T d1iuga_ 48 TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEA-GLVVERLDYPYGD--TPRPEDVA------- 117 (348)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEECCTTC--CCCTTTSC-------
T ss_pred CCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHHhc-CcccccccccCCC--cccccccc-------
Confidence 456778899999999999999999999999988877432 22334444 7777777764322 23333321
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC--CeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCC
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK--RIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~--~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (464)
.++++.+++++..+.||...+.+++ .+.|+++ +.++++|.+.+ ++.. + .++. .+
T Consensus 118 --~~~~~~v~~~h~eTstG~~~~i~~i---~~~~~~~~~~~l~~vDavss---~g~~--~-i~~d-------------~~ 173 (348)
T d1iuga_ 118 --KEGYAGLLLVHSETSTGALADLPAL---ARAFKEKNPEGLVGADMVTS---LLVG--E-VALE-------------AM 173 (348)
T ss_dssp --CSSCSEEEEESEETTTTEECCHHHH---HHHHHHHCTTCEEEEECTTT---BTTB--C-CCSG-------------GG
T ss_pred --ccCCCeeEEEecchhhhhhccHHHH---HHHHHhhhccceeechhhhc---cccc--c-cccc-------------cc
Confidence 3478889999999999999886654 5555454 57888999887 4332 1 1211 22
Q ss_pred CcEEEEcCCCcCC-CCCccEEEEEEecCHHHHHH------------HHH---hcccCCCChHHHHHHHHHcCCchhhHHH
Q 037587 263 SRIHIVYSLSKDF-SMPGFRVGMIYSNNERVVSA------------ATK---MSSFGLVSSQTQYLLSRMLSDKKFTCNY 326 (464)
Q Consensus 263 ~~vi~l~S~SK~~-g~~GlRiG~l~~~~~~~~~~------------~~~---~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 326 (464)
+..+++.|-.|.+ |.|| +|+++.+++.+.+. ... ...+++++.....++..+|+... .+
T Consensus 174 ~iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~--~~- 248 (348)
T d1iuga_ 174 GVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVL--PR- 248 (348)
T ss_dssp TCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG--GG-
T ss_pred cCCEEEeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHH--HH-
Confidence 4567788999998 7778 68888855433210 111 12234555555566666664211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeecCC-ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 037587 327 MKENRKRLRKRKEMLVSGLKVAGIRCLKSN-AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGW 405 (464)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 405 (464)
..+..+..+..+..+...++..|+...+.. .+-.+.+.+|+..+. .++... ++++||.+.+|.. ......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~~------~~~~~~-l~~~gi~i~~G~~--~l~~~~ 319 (348)
T d1iuga_ 249 LEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPY------ARVKEA-FAQRGAVIAGGQG--PLKGKV 319 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCCH------HHHHHH-HHTTTEECEECCG--GGTTTE
T ss_pred HhHHHHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCCH------HHHHHH-HHHCCeEEEcCcc--ccCCCE
Confidence 222233333344555666666788776432 122456777754332 245554 4788999988753 333568
Q ss_pred EEEEee-cCCHHHHHHHHHHHHHHHHhh
Q 037587 406 FRICFA-NITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 406 ~Ris~~-~~~~e~l~~~l~~l~~~l~~~ 432 (464)
|||+.- ..+.++++.++++|++++++.
T Consensus 320 ~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 320 FRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp EEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999864 378999999999999999863
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.62 E-value=6.3e-14 Score=138.07 Aligned_cols=340 Identities=13% Similarity=0.099 Sum_probs=195.1
Q ss_pred CCCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+. .|.+.++++++. .....+. ....+...+++.+.....
T Consensus 44 ~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~-------------~~~~~~~---~~~~~~~~la~~~~~~~~- 106 (427)
T d2gsaa_ 44 AYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM-------------EKGTSFG---APCALENVLAEMVNDAVP- 106 (427)
T ss_dssp TEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHH-------------TTCSCCS---SCCHHHHHHHHHHHHHST-
T ss_pred CEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHH-------------HhcCccc---cchhHHHHHHHHHHhhCC-
Confidence 45566677889999765 44443 477777776642 2221221 124566667777765432
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCCc-------------------EEEEEe
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPGV-------------------EIVPIH 162 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g~-------------------~~~~v~ 162 (464)
..+.+.+++++++|+..+++... ....+|+...-+|++....+....|- ....++
T Consensus 107 ----~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 182 (427)
T d2gsaa_ 107 ----SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP 182 (427)
T ss_dssp ----TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC
T ss_pred ----ccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC
Confidence 34688999999999999988642 23467888888888754333211111 111111
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
.-|++.+++.+++ ...++.+|++ -| ..-.|. ..|.+-+++|.++|+++|+++|.||++.++. .+.
T Consensus 183 -------~~~~~~le~~~~~---~~~~iaavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r-~g~- 249 (427)
T d2gsaa_ 183 -------YNDLEAVKALFAE---NPGEIAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFR-IAY- 249 (427)
T ss_dssp -------TTCHHHHHHHHTT---STTTEEEEEE-CSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT-TBT-
T ss_pred -------cchHHHHHHHHHh---CCCCeEEEEE-cCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccce-ecc-
Confidence 1378888888754 2235655555 46 333465 4567789999999999999999999998742 122
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc-----ccCCCChHHHHHHHH
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS-----SFGLVSSQTQYLLSR 315 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~ 315 (464)
.... +... ..+.++ +++|.+| .|+.+|.+++ .+.+.+.+.... ..+..++++.+++.+
T Consensus 250 --~~~~-~~~g---------i~PDi~---~~gK~lg-gG~p~~a~~~-~~~i~~~~~~~~~~~~~~T~~gnpla~AAala 312 (427)
T d2gsaa_ 250 --GGVQ-EKFG---------VTPDLT---TLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIK 312 (427)
T ss_dssp --TCHH-HHTT---------CCCSEE---EECGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred --cchH-HhcC---------CCHHHH---hhhhccC-CCcceeeeee-hHHHHHHhcccCCCcCCCCCCCCchhhHHHHH
Confidence 1221 1111 223333 7899998 8899999888 444544433211 112346666666655
Q ss_pred HcC---CchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cCCccEEEEEecCccc-------ccCChhHHHHHHHHH
Q 037587 316 MLS---DKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL-KSNAGLFCWVDMRHLL-------VSNTFEAEKELWKKI 384 (464)
Q Consensus 316 ~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~f~~~~l~~~~-------~~~~~~~~~~l~~~l 384 (464)
.|+ ..+. .+.++++.+.+++. +.+..++.++.+. ...++++ .+.+.... ...+......+...+
T Consensus 313 ~Le~i~~~~l-~~~~~~~g~~l~~~---L~~l~~~~~~~~~v~~~ggm~-~i~~~~~~v~~~~~~~~~d~~~~~~~~~~l 387 (427)
T d2gsaa_ 313 TLELLRQPGT-YEYLDQITKRLSDG---LLAIAQETGHAACGGQVSGMF-GFFFTEGPVHNYEDAKKSDLQKFSRFHRGM 387 (427)
T ss_dssp HHHHHTSTTH-HHHHHHHHHHHHHH---HHHHHHHTTCCCEEEEETTEE-EEESSSCCCCSHHHHTTSCHHHHHHHHHHH
T ss_pred hhHHhhhhhH-HhhhhHHHHHHHHH---HHHHHhhcCCCcEEcccCCeE-EEEEeccCCCCHHHhhcccHHHHHHHHHHH
Confidence 443 4333 33343333333333 3333344454332 2233443 23221110 111112223455566
Q ss_pred HHhcCeEEeCCCCCCCCCCCeEEEEeecCCHHHHHHHHHHHHHHHHh
Q 037587 385 IFEVGLNISPGSSCHCNEPGWFRICFANITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 431 (464)
+ ++||++.|+.. .. +-+++. +++++++++++++++++++
T Consensus 388 l-~~Gv~l~p~~~-----~~-~~~~l~-~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 388 L-EQGIYLAPSQF-----EA-GFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp H-HTTEECCSSTT-----SC-EECCTT-CCHHHHHHHHHHHHHHHTC
T ss_pred H-HCCEEECCCCC-----cc-eeCCCC-CCHHHHHHHHHHHHHHHHh
Confidence 5 67999987532 11 224444 6999999999999999875
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=8.5e-15 Score=146.56 Aligned_cols=327 Identities=13% Similarity=0.146 Sum_probs=190.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEE---------EcCCCCCChhhh
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFL---------LPTPYYPGFDRD 149 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vl---------v~~p~y~~~~~~ 149 (464)
.|.......+|.++++++++ .+.++.++++++++..++.+++++|+.++ .....|......
T Consensus 69 ~Y~~~~~~~~le~~~a~l~G----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (467)
T d2v1pa1 69 AFSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHTC----------CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred hhcCCchHHHHHHHHHHHHC----------CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHH
Confidence 57665667889998888874 45678899999999999999887665443 333333333334
Q ss_pred cccCCCcEEEEEecCCC--------CCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHHhh
Q 037587 150 LKWRPGVEIVPIHCSSS--------NGFRITISALENAYQQAQTLNLKVKGVLITNPSNPL-GTAMTHQELNHLINFSKS 220 (464)
Q Consensus 150 ~~~~~g~~~~~v~~~~~--------~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPt-G~~~s~~~l~~i~~~~~~ 220 (464)
+... |..++.++.+.. ....+|++.+++.+++.. ...++++++.+.+|.. |.+++.+++++|.++|++
T Consensus 139 ~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 139 SQIN-GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHT-TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHHc-CCeeeecccccccccccccccccCCCHHHHHHHHhhcC--ccccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 4445 888888876532 124678999999997642 1246677777776654 678899999999999999
Q ss_pred CCeEEEEeccccccc--cC---CCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHH
Q 037587 221 KRIHIVSDEIYSGTV--FD---SPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA 295 (464)
Q Consensus 221 ~~~~lI~Deay~~~~--~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~ 295 (464)
||+++++|+++.... +. .......++.....++ .....++..|.+|.++. ...|++..+++.+...
T Consensus 216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~d~~s~s~~K~~~~--~~gg~i~~~~~~~~~~ 286 (467)
T d2v1pa1 216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRET-------YKYADMLAMSAKKDAMV--PMGGLLCMKDDSFFDV 286 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHH-------GGGCSEEEEESSSTTCC--SSCEEEEECSGGGHHH
T ss_pred cCCEEEEechhhhccccccccccccccCCcccccchhh-------cccCCEEEecCCCCCCC--CCceeEEecchhhhhH
Confidence 999999999974210 00 0000011222222111 01233455688888753 3457777766544333
Q ss_pred HHHhc----------ccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEec
Q 037587 296 ATKMS----------SFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDM 365 (464)
Q Consensus 296 ~~~~~----------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l 365 (464)
.+... .+...+.....++...+..... .+++++ ..++.+++.+.|.+.+..+.+..+. .+.++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~~l~~~L~~~~~~v~~~~~~-~~~~~~ 360 (467)
T d2v1pa1 287 YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN-LDWLAY----RIAQVQYLVDGLEEIGVVCQQAGGH-AAFVDA 360 (467)
T ss_dssp HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC-HHHHHH----HHHHHHHHHHHHHHTTCCEEEECSS-CEEEEH
T ss_pred HHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhh-HHHHHH----HHHHHHHHHHHHHhcCCcccCCCcc-ceeecc
Confidence 22211 1112222333333322221111 222332 2345677888888888776654443 222222
Q ss_pred Cccc---ccCChhHHHHHHHHHHHhcCeEEeCCCC--------C---CCCCCCeEEEEeec--CCHHHHHHHHHHHHHHH
Q 037587 366 RHLL---VSNTFEAEKELWKKIIFEVGLNISPGSS--------C---HCNEPGWFRICFAN--ITEETLQVALQRIKVFA 429 (464)
Q Consensus 366 ~~~~---~~~~~~~~~~l~~~ll~~~gI~v~pg~~--------f---~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l 429 (464)
.... .... .....+...++.+.||....... . .+.....+|+++.. .|+|+++.++++|++++
T Consensus 361 ~~~~~~~~~~~-~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~ 439 (467)
T d2v1pa1 361 GKLLPHIPADQ-FPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVK 439 (467)
T ss_dssp HHHSTTSCGGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHH
T ss_pred hhhcCCcchhh-hhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 1111 1111 12223556677788885421110 0 01234679998853 48999999999999999
Q ss_pred HhhCc
Q 037587 430 QSCNP 434 (464)
Q Consensus 430 ~~~~~ 434 (464)
++.+.
T Consensus 440 ~~~~~ 444 (467)
T d2v1pa1 440 ENAAN 444 (467)
T ss_dssp HTGGG
T ss_pred HHHHh
Confidence 86653
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=7.8e-14 Score=134.34 Aligned_cols=196 Identities=15% Similarity=0.110 Sum_probs=137.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
.+..++++++..|+..++.+++++||.|++....|.+.... +... |+++..++.. |.+.+++++++
T Consensus 73 ~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~-Gi~~~~~d~~-------d~~~~~~~i~~-- 142 (391)
T d1cl1a_ 73 GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GVTTSWFDPL-------IGADIVKHLQP-- 142 (391)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEECTT-------CGGGGGGTCCT--
T ss_pred CccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhccccc-ccccccccCc-------ccccccccccc--
Confidence 45788999999999999999999999999999999876544 3344 8888877632 56777776654
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhh--CCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCC
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKS--KRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLW 262 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~--~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (464)
++++|++-+|.||+..+.+ +++++++|++ +|+++|+|..++...+- . ...+
T Consensus 143 ----~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~-~------Pl~~------------- 195 (391)
T d1cl1a_ 143 ----NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF-K------ALDF------------- 195 (391)
T ss_dssp ----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS-C------GGGG-------------
T ss_pred ----ccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhh-c------cccc-------------
Confidence 8999999999999999986 4555666644 59999999998743221 1 1112
Q ss_pred CcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhccc-CCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHH
Q 037587 263 SRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSSF-GLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEM 340 (464)
Q Consensus 263 ~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (464)
+..+++.|.+|.++ -...=.|.++.+++............ ..+++.....+..-++. +..+.++..++...
T Consensus 196 GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T-------L~lR~~~~~~nA~~ 268 (391)
T d1cl1a_ 196 GIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRT-------LGVRLRQHHESSLK 268 (391)
T ss_dssp TCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHH
T ss_pred ccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchh-------HHHHHHHHHHHHHH
Confidence 45688999999984 22344577777554443333222222 24667766666665655 33445556667778
Q ss_pred HHHHHHhC
Q 037587 341 LVSGLKVA 348 (464)
Q Consensus 341 l~~~l~~~ 348 (464)
+.+.|+++
T Consensus 269 vA~~L~~h 276 (391)
T d1cl1a_ 269 VAEWLAEH 276 (391)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 88899887
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.61 E-value=5.4e-14 Score=140.05 Aligned_cols=312 Identities=12% Similarity=0.144 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCC-----CCCCcEEEeCChHHHHHHHHHHhcC----------CC---------CeEEEcCC
Q 037587 86 FPDAKKELVKLMARIRGNKVK-----FDPNKLVLTAGSTAANETLMFCLAD----------PG---------DAFLLPTP 141 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~-----~~~~~i~it~G~~~al~~~~~~l~~----------~g---------d~Vlv~~p 141 (464)
..++...+.+++.+..|.+-. .....-++|+|+++++..++.+... +| -.|++.+-
T Consensus 111 ~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~ 190 (476)
T d1js3a_ 111 CTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQ 190 (476)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEeccc
Confidence 467888888888888774321 1123467999999999988765321 11 14778888
Q ss_pred CCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhC
Q 037587 142 YYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSK 221 (464)
Q Consensus 142 ~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~ 221 (464)
+|..+..++..+ |..+..+|+++ ++.+|+++|++.|++..+.+..+-+|+.+..++.||.+ +.+++|.++|+++
T Consensus 191 ~H~Si~ka~~~l-Gl~~~~v~~d~--~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~i---Dpl~~I~~i~~~~ 264 (476)
T d1js3a_ 191 AHSSVERAGLIG-GVKLKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF---DNLLEVGPICHEE 264 (476)
T ss_dssp CCHHHHHHHHHH-TCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CCHHHHHHHHHHT
T ss_pred ccHHHHHHHHhc-CceEEEeccCC--CCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceee---ccHHHHHHHHHhc
Confidence 888888888877 99999999864 67899999999999877777777778888889999999 5688889999999
Q ss_pred CeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHH-HHH--
Q 037587 222 RIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSA-ATK-- 298 (464)
Q Consensus 222 ~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~-~~~-- 298 (464)
++|+.+|.+|+++..... .......-++ ...-+..+++|.++.| .-+|.++.+++..... +..
T Consensus 265 ~~wlHVDAA~Gg~~~~~~--~~~~~~~gi~-----------~aDSit~d~HK~l~~P-~~~g~~l~r~~~~~~~~~~~~~ 330 (476)
T d1js3a_ 265 DIWLHVDAAYAGSAFICP--EFRHLLNGVE-----------FADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDP 330 (476)
T ss_dssp TCEEEEECTTGGGGGGST--TTGGGGTTGG-----------GCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC---
T ss_pred CcEEEEecccchhhhhhc--chhhhhcCCc-----------ccceeeecCccccccC-CcceeecccchHHHHHHHhcCh
Confidence 999999999987643332 2222221121 1224456999998755 4678888766543221 100
Q ss_pred -----h----------cccC---C--CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-cCC
Q 037587 299 -----M----------SSFG---L--VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCL-KSN 356 (464)
Q Consensus 299 -----~----------~~~~---~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~ 356 (464)
. ..+. + ...+...++...+. .+.+++..+..-+..+++.+.+++. ++++. ++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G-----~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~ 405 (476)
T d1js3a_ 331 VYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT 405 (476)
T ss_dssp ---------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC
T ss_pred hhhccccccccccccccccccccchhhHHHHHHHHHHHHh-----HhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCc
Confidence 0 0000 0 11223333333332 3345555555666778888888887 77765 566
Q ss_pred ccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec--CCHHHHHHHHHHHHHHHHh
Q 037587 357 AGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN--ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 357 ~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~ 431 (464)
.+ .+.+++... .....++.+++.++..+.+.+... .+..++|++++. .++++++.+++.|+++.++
T Consensus 406 l~-iV~Fr~~~~-----d~~n~~l~~~l~~~G~~~~s~t~~---~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ 473 (476)
T d1js3a_ 406 LG-LVCFRLKGS-----DGLNEALLERINSARKIHLVPCRL---RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (476)
T ss_dssp SS-EEEEEESSC-----HHHHHHHHHHHHHHTSCBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eE-EEEEEccCC-----hHHHHHHHHHHHhcCCEEEeeeeE---CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 66 455665421 012235667776553355554321 234489999974 5788999999999998765
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.61 E-value=3.4e-14 Score=141.93 Aligned_cols=177 Identities=14% Similarity=-0.009 Sum_probs=106.2
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEE--EEe
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIV--PIH 162 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~--~v~ 162 (464)
-..++++.+|++++ . .+-+++++|++.++..++.++++|||.|+++..+|......+..+.+..++ ..+
T Consensus 67 ~i~eae~~~A~~~g--------a-~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~ 137 (462)
T d1c4ka2 67 PAVAAEKHAARVYN--------A-DKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTN 137 (462)
T ss_dssp HHHHHHHHHHHHTT--------C-SEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEE
T ss_pred HHHHHHHHHHHHhC--------C-CeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeecc
Confidence 35788999999986 2 345666788888998989999999999999999998766544333244433 344
Q ss_pred cCCCCC-cc-----cCHHHHHHHHHH---HhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 163 CSSSNG-FR-----ITISALENAYQQ---AQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 163 ~~~~~~-~~-----~d~~~l~~~i~~---~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
.++.+. .. ++.+.+++.+.. ......++..+++...+|-+|.+.+ +++|+++|+++|+++++|+++..
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~~ 214 (462)
T d1c4ka2 138 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVG 214 (462)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEECTTCC
T ss_pred cccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEechhhc
Confidence 443221 11 222333222110 0012234444555445578999865 67788999999999999999975
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG 279 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G 279 (464)
.....+ ....+........ ....+..+++.|++|++|.++
T Consensus 215 ~~~~~~-~~~~~~~~~g~~~-----~~~~~~D~~~~S~HK~lg~~~ 254 (462)
T d1c4ka2 215 YEQFIP-MMRNSSPLLIDDL-----GPEDPGIIVVQSVHKQQAGFS 254 (462)
T ss_dssp GGGSSG-GGGGGCTTSCCCC-----CTTSCEEEEEECHHHHSSCCT
T ss_pred cccccC-cCCcchhhccccc-----cccCCccEEEEecCccccccc
Confidence 322111 0001111111100 002245788999999997543
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.60 E-value=5.9e-14 Score=132.53 Aligned_cols=207 Identities=17% Similarity=0.266 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEec
Q 037587 88 DAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIHC 163 (464)
Q Consensus 88 ~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~~ 163 (464)
.|.+.+|+..+ .+..++++++..|+..++.+++++||.|++..+.|++.... ++.. |+++..++.
T Consensus 2 aLE~~la~Leg----------~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~-gi~~~~~d~ 70 (331)
T d1pffa_ 2 ALEGKIAKLEH----------AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF-GVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEECT
T ss_pred HHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhc-CeEEEEecc
Confidence 46677777753 45678899999999999999999999999999999765444 4445 999988864
Q ss_pred CCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHH-hhCCeEEEEeccccccccCCCCCC
Q 037587 164 SSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFS-KSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 164 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~-~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
. |++.+++++++ ++++|++.+|.||+..+.+ ++++++++ +++++++|+|..++...+-.+
T Consensus 71 ~-------d~~~~~~~i~~------~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~~p--- 131 (331)
T d1pffa_ 71 A-------VPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTNP--- 131 (331)
T ss_dssp T-------STTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCCG---
T ss_pred c-------chhhHhhhccc------ccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccccc---
Confidence 3 57888887754 8999999999999999976 44455554 567999999999874322211
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHH-hcc-cC-CCChHHHHHHHHHcC
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATK-MSS-FG-LVSSQTQYLLSRMLS 318 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~-~~~-~~-~~s~~~q~~~~~~l~ 318 (464)
..+ +..++++|.+|.++ -...=.|.++++++...+.... ... .+ .+++.....+..-++
T Consensus 132 ----l~~-------------GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~ 194 (331)
T d1pffa_ 132 ----LDL-------------GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTL 194 (331)
T ss_dssp ----GGG-------------TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred ----ccc-------------CCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHH
Confidence 112 44588999999984 3335567777754443332222 222 12 355555555554443
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 319 DKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
. +..+.++..++...+.+.|+++
T Consensus 195 T-------l~~Rm~~~~~nA~~lA~~L~~h 217 (331)
T d1pffa_ 195 T-------LDMRVKRAAENAQKVAEFLHEH 217 (331)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred H-------HHHHHHHHHHHHHHHHHhhhhC
Confidence 3 4555666677888889999887
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=3.7e-14 Score=140.39 Aligned_cols=318 Identities=14% Similarity=0.073 Sum_probs=201.8
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCC-CCcEEEeCChHHHHHHHHHHhc-----------CC-CCeEEEcCCCCCChhhhcc
Q 037587 85 GFPDAKKELVKLMARIRGNKVKFD-PNKLVLTAGSTAANETLMFCLA-----------DP-GDAFLLPTPYYPGFDRDLK 151 (464)
Q Consensus 85 g~~~lr~~ia~~~~~~~~~~~~~~-~~~i~it~G~~~al~~~~~~l~-----------~~-gd~Vlv~~p~y~~~~~~~~ 151 (464)
...++...+.+++.+.++.+.+.. ...=.+|+|+|+++.+++.+.. .+ ...+++....|..+..+++
T Consensus 90 ~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~ 169 (450)
T d1pmma_ 90 QSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFAR 169 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHH
Confidence 346788888888888776322111 1124799999999999887642 11 2357777778888888888
Q ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHH---HHhhCCeEEEEe
Q 037587 152 WRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLIN---FSKSKRIHIVSD 228 (464)
Q Consensus 152 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~---~~~~~~~~lI~D 228 (464)
.. |++++.++.++ .++.+|+++|++.+++ ++.+|+.+.++|.||.+-+.+++..+++ .|+++|+++.+|
T Consensus 170 ~~-gi~~~~v~~~~-~~~~~d~~~L~~~i~~------~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVD 241 (450)
T d1pmma_ 170 YW-DVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHID 241 (450)
T ss_dssp HT-TCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred Hc-CCCceEeeecC-CCCcCcHHHHHHHhhh------CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEee
Confidence 77 99999999875 4589999999998865 7888888999999999988877666654 467789999999
Q ss_pred ccccccc--cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-------
Q 037587 229 EIYSGTV--FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM------- 299 (464)
Q Consensus 229 eay~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~------- 299 (464)
.+|+++. |..+ ... +.. +......+..|.+|.++ ....+||++.+++.........
T Consensus 242 AA~gG~~~p~~~~--~~~----~~~--------~~~~aDSi~~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~ 306 (450)
T d1pmma_ 242 AASGGFLAPFVAP--DIV----WDF--------RLPRVKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGG 306 (450)
T ss_dssp CTTGGGTHHHHCT--TCC----CST--------TSTTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTE
T ss_pred hhhccceeeeech--hhh----hhh--------cccceeEeecChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCC
Confidence 9998653 2222 101 100 12245566789999875 4455899998665432111100
Q ss_pred --cccC-CCCh-----HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC---Ccc-EEEEEecC
Q 037587 300 --SSFG-LVSS-----QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS---NAG-LFCWVDMR 366 (464)
Q Consensus 300 --~~~~-~~s~-----~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~---~~g-~f~~~~l~ 366 (464)
..+. ..+. ..+.+....+. .+.+++..+...+..+++.+.|++. ++++..+ ..+ ..+.+++.
T Consensus 307 ~~~~~~~~~sr~~~~~~~~~~~l~~~G-----~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~ 381 (450)
T d1pmma_ 307 QIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLK 381 (450)
T ss_dssp EEEECCSCCSCBSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEEC
T ss_pred CcCCCcccCccchHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecC
Confidence 0011 1111 11222222222 3345666667777888899999887 4666521 221 23445554
Q ss_pred cccccCChhHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 367 HLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHC--NEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 367 ~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
.... ..+ ...++... |+++|..|.. ..+.. .....+|+.+.. .++++++.+++.|+++++..+.
T Consensus 382 ~~~~-~~~-~~~~l~~~-L~~~Gw~v~~-~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 382 DGED-PGY-TLYDLSER-LRLRGWQVPA-FTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp TTCC-CSS-CHHHHHHH-HHTTTCBCCE-EECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc-CCC-CHHHHHHH-HHHcCCeeec-cCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3211 111 12235444 4678976632 11111 224579999977 7899999999999999987754
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=5.3e-13 Score=131.26 Aligned_cols=347 Identities=13% Similarity=0.049 Sum_probs=193.4
Q ss_pred CCCCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcC
Q 037587 27 NPYDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRG 102 (464)
Q Consensus 27 ~~y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~ 102 (464)
..|..+.+...+||+..+ .+.+. .|.+.++++++.+. ........-..+....+++.+-....
T Consensus 34 G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~-------------~~~~~~~~~~~~~~~~l~~~l~~~~~ 100 (429)
T d1s0aa_ 34 GCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA-------------MSHVMFGGITHAPAIELCRKLVAMTP 100 (429)
T ss_dssp BTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHH-------------CSCCCCSSEECHHHHHHHHHHHHHSC
T ss_pred CCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHh-------------cCCcccCCccchHHHHHHHHHHhhhc
Confidence 345555566788998765 44443 57777777765321 11111111112333444444443322
Q ss_pred CCCCCCCCcEEEeCChHHHHHHHHHHhc-------CCCCeEEEcCCCCCChhhhcccCCC-------------cEEEEEe
Q 037587 103 NKVKFDPNKLVLTAGSTAANETLMFCLA-------DPGDAFLLPTPYYPGFDRDLKWRPG-------------VEIVPIH 162 (464)
Q Consensus 103 ~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~~g-------------~~~~~v~ 162 (464)
..-+.+.+++++++++..+++... .+..+|+...-+|++....+....+ ......|
T Consensus 101 ----~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~ 176 (429)
T d1s0aa_ 101 ----QPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAP 176 (429)
T ss_dssp ----TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEEC
T ss_pred ----cCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCcccccccccc
Confidence 345689999999999998887642 2335788888888764322111101 1122222
Q ss_pred cCC-CCCccc---CHHHHHHHHHHHhhcCCceEEEEEeCC--CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccc
Q 037587 163 CSS-SNGFRI---TISALENAYQQAQTLNLKVKGVLITNP--SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTV 235 (464)
Q Consensus 163 ~~~-~~~~~~---d~~~l~~~i~~~~~~~~~~~~vil~~P--~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~ 235 (464)
... ...... +++.+++.+.+ .+.++.+|++. | ++-.|. ..|++-+++|.++|+++|+++|.||++.++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iaavivE-Pi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfG 252 (429)
T d1s0aa_ 177 APQSRMDGEWDERDMVGFARLMAA---HRHEIAAVIIE-PIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG 252 (429)
T ss_dssp CCCSBC-CCCCGGGGHHHHHHHHH---HTTTEEEEEEC-SSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ccccccccccchhhhhhhhhhhhh---cCCccceeeec-ceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccc
Confidence 111 111112 34455444433 34577666655 5 354554 5688999999999999999999999999742
Q ss_pred cCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh-------cccCCCChH
Q 037587 236 FDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM-------SSFGLVSSQ 308 (464)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~-------~~~~~~s~~ 308 (464)
-.+. . ... +... ..+. +-+++|.++-.++.+|.+++ .+.+.+.+... ...+..+++
T Consensus 253 RtG~--~-~~~-~~~~---------v~PD---i~~~gK~l~gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~gnp~ 315 (429)
T d1s0aa_ 253 RTGK--L-FAC-EHAE---------IAPD---ILCLGKALTGGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPL 315 (429)
T ss_dssp TTSS--S-SGG-GGGT---------CCCS---EEEECGGGGTSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHH
T ss_pred cccc--c-ccc-ccce---------eccc---ccccccccccccccccchhh-HHHHHhccCCCCCcceeecCCCCCCcc
Confidence 2222 1 111 1111 1233 33789999734489999998 55555544321 112235667
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC---C-CeeecCCccEEEEEecCcccccCChhHHHHHHHHH
Q 037587 309 TQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA---G-IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKI 384 (464)
Q Consensus 309 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~l 384 (464)
+.+++.+.|+--+- + ......++.-+++.+.|+++ . +.-.. ..|+++-+++..... ...+...+
T Consensus 316 ~~aaa~a~L~~i~~-~----~~~~~~~~~g~~l~~~L~~l~~~~~v~~vr-g~Gl~~~~e~~~~~~------~~~~~~~~ 383 (429)
T d1s0aa_ 316 ACAAANASLAILES-G----DWQQQVADIEVQLREQLAPARDAEMVADVR-VLGAIGVVETTHPVN------MAALQKFF 383 (429)
T ss_dssp HHHHHHHHHHHHHT-C----HHHHHHHHHHHHHHHHHGGGGGCTTEEEEE-EETTEEEEEESSCBC------HHHHHHHH
T ss_pred cchhhhcccccccc-c----cccchhhHHHHHHHHHHHHhccCCceEEEe-ecccEEEEEecCccc------HHHHHHHH
Confidence 76666665542110 1 11222233334444455433 2 21122 234576677754322 22455665
Q ss_pred HHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 385 IFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 385 l~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+ ++||++.|+ .+.+|++... ++++++++++++|.+++++
T Consensus 384 ~-~~Gl~~~~~-------g~~i~~~Ppl~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 384 V-EQGVWIRPF-------GKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp H-HTTEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred H-HCCcEEEec-------CCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence 5 679998764 2479998765 6999999999999998764
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.58 E-value=8.6e-14 Score=134.31 Aligned_cols=306 Identities=12% Similarity=0.103 Sum_probs=179.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCC----cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcc-----c--CC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPN----KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLK-----W--RP 154 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~----~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~--~~ 154 (464)
.+++.....++..+.++ ++.. ||-.-+ ++.|+..++.+|++|||+|+..++..+++...-. . ..
T Consensus 71 iD~iE~la~~ra~~lF~----~~~a~w~vNVqp~S-Gs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~ 145 (463)
T d2a7va1 71 VDEIELLCQRRALEAFD----LDPAQWGVNVQPYS-GSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT 145 (463)
T ss_dssp CTHHHHHHHHHHHHHTT----CCTTTEEEECCCSS-HHHHHHHHHHHHCCSCEECCC-----------------------
T ss_pred HHHHHHHHHHHHHHHhC----CCchhccCCccccc-cHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccce
Confidence 45555544555555555 5555 455544 5567778888999999999999888776643210 0 01
Q ss_pred C--cEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEecccc
Q 037587 155 G--VEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYS 232 (464)
Q Consensus 155 g--~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~ 232 (464)
| .+.+.+.++++ ...+|.+++++.+++. +|++|++.....|- .++ .+++.++|.+.|.+++.|-++.
T Consensus 146 g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~-----kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~ 214 (463)
T d2a7va1 146 SIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHI 214 (463)
T ss_dssp --------CCBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGG
T ss_pred eeEeeeeeeeccCC-CCcCcHHHHHHHHhhc-----CCceEEeccccccc--ccC---HHHHHHHhhcccceEEechhhh
Confidence 2 24445555543 4568999999999886 89987776544443 344 5556666668899999999996
Q ss_pred ccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCH--------------HHHHHHHH
Q 037587 233 GTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE--------------RVVSAATK 298 (464)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~--------------~~~~~~~~ 298 (464)
.....+. .+++.... ..++..|.+|+| +|-|-|.|.+.++ .+.+.+..
T Consensus 215 aGLIA~g--~~~sP~~~--------------aDvvt~tTHKTl--rGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (463)
T d2a7va1 215 SGLVAAK--VIPSPFKH--------------ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINF 276 (463)
T ss_dssp HHHHHTT--SSCCGGGT--------------CSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHH
T ss_pred hHHhhhh--hhcChhhh--------------hhhhhchhhhhh--cCCCceEEEEcccccccccccCccchhHHHHHhhh
Confidence 5444443 33443332 236788999998 7889999988542 33444443
Q ss_pred hcccC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCccEEEEEecCcc-cccCChh
Q 037587 299 MSSFG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-SNAGLFCWVDMRHL-LVSNTFE 375 (464)
Q Consensus 299 ~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~f~~~~l~~~-~~~~~~~ 375 (464)
..-++ ..++....+++.+..-.+......++..+++.++.+.|.+.|.+.|+++.. ...+..+++++... .+.
T Consensus 277 avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~G---- 352 (463)
T d2a7va1 277 AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDG---- 352 (463)
T ss_dssp HHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCH----
T ss_pred hcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCceeeeeccccCCCH----
Confidence 32222 222221111111111011111223444555666788899999999998874 34456778898542 222
Q ss_pred HHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHHhhC
Q 037587 376 AEKELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFAN-----ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 376 ~~~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..+...|++.||.+. |+.. .+..++.+||+... ..++++.++.+.|.++++..+
T Consensus 353 ---~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~~~~ 415 (463)
T d2a7va1 353 ---ARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGL 415 (463)
T ss_dssp ---HHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhccCccCCccCCCCC-CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 245667788999985 5543 22235679999854 357899999999988876433
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.58 E-value=8e-13 Score=127.28 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=138.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhh----cccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRD----LKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
.+..++++++..|+..++.+++++||.|++.+..|++.... +... |+++..++.. |++.+++++++
T Consensus 74 ~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~-gi~~~~~d~~-------d~~~~~~~i~~-- 143 (394)
T d1e5ea_ 74 TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF-GIQVDFINTA-------IPGEVKKHMKP-- 143 (394)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEECTT-------STTHHHHHCCT--
T ss_pred CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhcc-ceeeeccCCC-------CHHHHHHhhcc--
Confidence 45678889999999999999999999999999999765433 3445 8898888753 56788887754
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHh-hCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCC
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSK-SKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWS 263 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~-~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (464)
++++|++..|.||+..+.+ ++++++.+. ++|+++|+|..++...+- ...++ +
T Consensus 144 ----~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~-------~Pl~~-------------G 196 (394)
T d1e5ea_ 144 ----NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT-------NPVDF-------------G 196 (394)
T ss_dssp ----TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC-------CGGGG-------------T
T ss_pred ----cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccC-------Cchhc-------------C
Confidence 8999999999999999975 555666554 468999999988642221 11122 4
Q ss_pred cEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHH-hcc-cC-CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHH
Q 037587 264 RIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATK-MSS-FG-LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKE 339 (464)
Q Consensus 264 ~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~-~~~-~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 339 (464)
..|+++|.+|.++ -..+=.|.++++++.+...... ... .+ .+++.....+..-++. +..+.++..++..
T Consensus 197 aDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T-------L~lRm~r~~~nA~ 269 (394)
T d1e5ea_ 197 VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST-------LNIRMKAESENAM 269 (394)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHH
T ss_pred CCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh-------HHHHHHHHHHHHH
Confidence 5688999999984 3345567777754433332211 222 22 3667777777766665 3445566667788
Q ss_pred HHHHHHHhC
Q 037587 340 MLVSGLKVA 348 (464)
Q Consensus 340 ~l~~~l~~~ 348 (464)
.+.+.|+++
T Consensus 270 ~lA~~L~~h 278 (394)
T d1e5ea_ 270 KVAEYLKSH 278 (394)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 889999887
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.58 E-value=6.6e-13 Score=130.96 Aligned_cols=364 Identities=12% Similarity=0.083 Sum_probs=194.3
Q ss_pred CCCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+. .|.+.+++.++.+. .. |-......+.+..+|+.+-+...
T Consensus 33 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~-------------~~-~~~~~~~~~~~~~la~~L~~~~~- 97 (431)
T d1zoda1 33 SFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK-------------LD-HLFSEMLSRPVVDLATRLANITP- 97 (431)
T ss_dssp TEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH-------------CC-CCCTTCCCHHHHHHHHHHHHHSC-
T ss_pred CEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhh-------------cc-ccccccccHHHHHHHHHHHHhCC-
Confidence 35555566789999764 44454 47777777765321 11 11111223444566776655432
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChhhhcccCC-----------CcEEEEEecCCC--C-
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCL--ADPGDAFLLPTPYYPGFDRDLKWRP-----------GVEIVPIHCSSS--N- 167 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~~-----------g~~~~~v~~~~~--~- 167 (464)
-..+.++++++++||+..+++.. ....+.|+...-+|++....+.... ......++.... .
T Consensus 98 ---~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (431)
T d1zoda1 98 ---PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPR 174 (431)
T ss_dssp ---TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCC
T ss_pred ---cccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccc
Confidence 13478999999999999998874 2234778888888876543321110 011222221110 0
Q ss_pred ----CcccCHHHHHHHHHHHhhcC-CceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCC
Q 037587 168 ----GFRITISALENAYQQAQTLN-LKVKGVLITNP-SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPS 240 (464)
Q Consensus 168 ----~~~~d~~~l~~~i~~~~~~~-~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~ 240 (464)
....+.+.++.........+ .++.+ ++.-| ..-.|. ..|++-+++|.++|+++|+++|.||++.++.-.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iAa-vi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~- 252 (431)
T d1zoda1 175 FERNGAYDYLAELDYAFDLIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT- 252 (431)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-
T ss_pred cccccchhhhhhHHHHHHHHHHhccccccc-eeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc-
Confidence 01112333333333222222 35555 44456 223444 46888899999999999999999999997422222
Q ss_pred CCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhc---ccCCCChHHHHHHHHHc
Q 037587 241 SSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMS---SFGLVSSQTQYLLSRML 317 (464)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~---~~~~~s~~~q~~~~~~l 317 (464)
.+ . .+... ..+. +-+++|.+| .|+.++.+++.++.......... ..+..++++.+++.+.+
T Consensus 253 -~~-~-~~~~g---------v~PD---i~~~gK~l~-gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l 316 (431)
T d1zoda1 253 -MF-A-CQRDG---------VTPD---ILTLSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVL 316 (431)
T ss_dssp -SS-T-HHHHT---------CCCS---EEEECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHH
T ss_pred -cc-c-cccCC---------CCcc---hhccccccc-cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHH
Confidence 11 1 11111 1123 337899998 88888888885443333222211 12235566666665554
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCccccc--CChhHHHHHHHHHHHhcCeEEeCC
Q 037587 318 SDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVS--NTFEAEKELWKKIIFEVGLNISPG 395 (464)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~l~~~ll~~~gI~v~pg 395 (464)
+--.- ++..++..+.-+...+.+.+.+.++++....-.-|+++-+++...... .......++...++ ++|+.+...
T Consensus 317 ~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~-~~Gl~~~~~ 394 (431)
T d1zoda1 317 DVVQR-DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIV 394 (431)
T ss_dssp HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEE
T ss_pred HHhhh-hhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHH-HhCcccCee
Confidence 42111 112222222222233334455555554332223345655655321111 11112234556665 678864211
Q ss_pred CCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 396 SSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 396 ~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
. .....+.+|++.+. ++++++++++++|.+++++
T Consensus 395 ~--~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 395 Q--LPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp C--CTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred e--ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 11135679998876 7999999999999999986
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.9e-13 Score=133.47 Aligned_cols=336 Identities=13% Similarity=0.091 Sum_probs=192.5
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+ ..|.+.+++.++.+. ......+....-...+.+.+++..
T Consensus 33 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~----------~~~~~~~~~~~~~~~~~~~~~~~~------ 96 (404)
T d2byla1 33 IYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDK----------LTLTSRAFYNNVLGEYEEYITKLF------ 96 (404)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT----------CCCCCTTEEESSHHHHHHHHHHHH------
T ss_pred CEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhh----------CCCcccccccchHHHHHHhhhhcc------
Confidence 34445556788998865 3333 346677776664221 111111111111223333333332
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc----------CCCCeEEEcCCCCCChhhhcccCCC------------cEEEEE
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA----------DPGDAFLLPTPYYPGFDRDLKWRPG------------VEIVPI 161 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~----------~~gd~Vlv~~p~y~~~~~~~~~~~g------------~~~~~v 161 (464)
..+.+.+++++++++..+++... .....++...-+|.+.........+ -.+..+
T Consensus 97 ----~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~ 172 (404)
T d2byla1 97 ----NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDII 172 (404)
T ss_dssp ----TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEE
T ss_pred ----cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEe
Confidence 35789999999999999998752 1224677666666543222111101 112333
Q ss_pred ecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCC-CCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCC
Q 037587 162 HCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNP-SNPLG-TAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSP 239 (464)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG-~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~ 239 (464)
|. .|++++++.+.. +++.+|++ .| ....| ...+++.+++|.++|+++|+++|.||+..++ +..
T Consensus 173 p~-------~d~~~l~~~l~~-----~~iAavii-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGf--gR~ 237 (404)
T d2byla1 173 PY-------NDLPALERALQD-----PNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGL--ART 237 (404)
T ss_dssp CT-------TCHHHHHHHHTS-----TTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT--TTT
T ss_pred cc-------cCHHHHHHhcCC-----CCeEEEEE-CCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccc--ccc
Confidence 32 267888888753 36665555 56 34456 4567788999999999999999999999874 322
Q ss_pred CCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhc--ccCCCChHHHHHHHHH
Q 037587 240 SSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMS--SFGLVSSQTQYLLSRM 316 (464)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~ 316 (464)
+ .+... +... ..+. +-+|+|.+| .| +.+|.+++ ++.+.+.+.... ..+..++++.+++.+.
T Consensus 238 G-~~~a~-~~~g---------v~PD---i~~~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~ 301 (404)
T d2byla1 238 G-RWLAV-DYEN---------VRPD---IVLLGKALS-GGLYPVSAVLC-DDDIMLTIKPGEHFSTYGGNPLGCRVAIAA 301 (404)
T ss_dssp S-SSSGG-GGGT---------CCCS---EEEECGGGG-TTSSCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHH
T ss_pred c-ccchh-hhcC---------CCCC---EEEECchhh-CCCccceeeee-chhhhhccCCCCCCcCCCcCHHHHHHHHHH
Confidence 1 11111 1111 1122 238999998 66 89999998 455544332222 1123567777777666
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCC---CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEe
Q 037587 317 LSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAG---IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNIS 393 (464)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~ 393 (464)
|+.-+ + +...+..++.-.++.+.|.++. +.-.. .-|++.-+.+...... ...++..+++ ++||++.
T Consensus 302 L~~i~--~---~~l~~~~~~~g~~l~~~l~~l~~~~i~~vR-g~Gl~~~i~~~~~~~~----~~~~~~~~l~-~~Gvl~~ 370 (404)
T d2byla1 302 LEVLE--E---ENLAENADKLGIILRNELMKLPSDVVTAVR-GKGLLNAIVIKETKDW----DAWKVCLRLR-DNGLLAK 370 (404)
T ss_dssp HHHHH--H---TTHHHHHHHHHHHHHHHHHTSCTTTEEEEE-EETTEEEEEECCCSSC----CHHHHHHHHH-HTTEECE
T ss_pred HHHHH--h---cCchhhhhHhhHHHHHHHHhhccccceeee-ecccEEEEEEecCCch----hHHHHHHHHH-hCCeEEe
Confidence 65321 1 1122333344455666666542 11122 2345655666432211 1234667765 6799998
Q ss_pred CCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 394 PGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 394 pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
|.. .+.+|++... ++++++++++++|++++++
T Consensus 371 ~~~------~~~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 371 PTH------GDIIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EEE------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCC------CCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 632 3579998765 6899999999999999875
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=7.8e-13 Score=127.92 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=134.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHh
Q 037587 109 PNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRPGVEIVPIHCSSSNGFRITISALENAYQQAQ 184 (464)
Q Consensus 109 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 184 (464)
.+..++++++..|+..++.+++++||.|++....|++....+ ... |+++..++.+. ..+..+..++
T Consensus 73 ~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~-gi~~~~~d~~~------~~~~~~~~~~--- 142 (421)
T d2ctza1 73 GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL-GIEVRFTSREE------RPEEFLALTD--- 142 (421)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHT-TCEEEECCTTC------CHHHHHHHCC---
T ss_pred CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhc-cccceeccccc------CcchhccccC---
Confidence 456788999999999999999999999999999997765543 344 88888765321 2344444443
Q ss_pred hcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCc
Q 037587 185 TLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSR 264 (464)
Q Consensus 185 ~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (464)
+++++|++-+|.|||..+. ++++|+++|+++|+++|+|..++..-+... + ..+ +.
T Consensus 143 ---~~t~li~~EtpsNP~l~v~---Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~-----P-l~~-------------Ga 197 (421)
T d2ctza1 143 ---EKTRAWWVESIGNPALNIP---DLEALAQAAREKGVALIVDNTFGMGGYLLR-----P-LAW-------------GA 197 (421)
T ss_dssp ---TTEEEEEEESSCTTTCCCC---CHHHHHHHHHHHTCEEEEECGGGGGGTSCC-----G-GGG-------------TC
T ss_pred ---CCceEEEEcCCCcceeEec---chHHHHHHHHhcCCceEecccccccceecc-----c-ccc-------------CC
Confidence 3899999999999999996 578888899999999999999862111111 1 112 55
Q ss_pred EEEEcCCCcCCCC-CccEEEEEEecCHH-------------------------------HHHHH-HHhcccC-CCChHHH
Q 037587 265 IHIVYSLSKDFSM-PGFRVGMIYSNNER-------------------------------VVSAA-TKMSSFG-LVSSQTQ 310 (464)
Q Consensus 265 vi~l~S~SK~~g~-~GlRiG~l~~~~~~-------------------------------~~~~~-~~~~~~~-~~s~~~q 310 (464)
.++++|.+|.++= ..+=.|.++..++. +.+.. ..+...+ .+++...
T Consensus 198 DiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a 277 (421)
T d2ctza1 198 ALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEA 277 (421)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHH
T ss_pred cEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHH
Confidence 6889999999952 33445666653221 11111 0111222 3677777
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
..+..-++. +.-+.++..++...+.+.|+++
T Consensus 278 ~l~~rgl~T-------L~lRm~~~~~nA~~vA~~L~~h 308 (421)
T d2ctza1 278 WVVLLGMET-------LSLRAERHVENTLHLAHWLLEQ 308 (421)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCCcc-------hhhHHHHHHHHHHHHHhhhccC
Confidence 777766665 3344555666777888899887
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=1.8e-13 Score=132.86 Aligned_cols=332 Identities=14% Similarity=0.092 Sum_probs=196.6
Q ss_pred CCCCCCCCCceEEeecc--ccccc--HHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQLS--FDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.+...+||+..+ .+.+. .|.+.+++.++.+ .....+.. -..+.+..+++.+.....
T Consensus 29 ~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~-------------~~~~~~~~-~~~~~~~~la~~l~~~~~- 93 (387)
T d1vefa1 29 ARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAE-------------TLMAMPQT-LPTPMRGEFYRTLTAILP- 93 (387)
T ss_dssp TEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHH-------------HCCCCCTT-SCCHHHHHHHHHHHHTSC-
T ss_pred CEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHH-------------hhcccccc-cCCchHHHHHHHhhhhcc-
Confidence 35555567789998653 44453 4677777666422 22222211 124666677766654321
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChhhhcccCCC------------cEEEEEecCCCCCc
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA--DPGDAFLLPTPYYPGFDRDLKWRPG------------VEIVPIHCSSSNGF 169 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~ 169 (464)
-..+.+.+++++++++..+++... ....+|+....+|++....+....| ..+..+|.
T Consensus 94 ---~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~------ 164 (387)
T d1vefa1 94 ---PELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY------ 164 (387)
T ss_dssp ---TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT------
T ss_pred ---ccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC------
Confidence 223579999999999999988742 2346888888888765433222212 12333442
Q ss_pred ccCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCC-CCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchh
Q 037587 170 RITISALENAYQQAQTLNLKVKGVLITNP-SNPLGT-AMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIM 247 (464)
Q Consensus 170 ~~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~-~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~ 247 (464)
.|++.|++.+.+ ++.+|++ .| ....|. ..+++-++++.++|+++|+++|.||+..++.-.+. . ...
T Consensus 165 -~d~~~l~~~~~~------~iAavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~--~--~~~ 232 (387)
T d1vefa1 165 -NDVEALKRAVDE------ETAAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--R--FAF 232 (387)
T ss_dssp -TCHHHHHHHCCT------TEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S--STH
T ss_pred -CCHHHHHHhcCC------CeEEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC--C--ccc
Confidence 267888877653 6766555 56 334565 46788899999999999999999999987422222 1 111
Q ss_pred hhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHh--cccCCCChHHHHHHHHHcCCchhhHH
Q 037587 248 EAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKM--SSFGLVSSQTQYLLSRMLSDKKFTCN 325 (464)
Q Consensus 248 ~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~ 325 (464)
+... ..+. +-+++|.+| .|+.++.+++..+ +...+... ...++.++++.+++.+.|+--+ +
T Consensus 233 ~~~~---------v~PD---i~~~gK~l~-gG~~~~~~~~~~~-~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~--~- 295 (387)
T d1vefa1 233 EHFG---------IVPD---ILTLAKALG-GGVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE--R- 295 (387)
T ss_dssp HHHT---------CCCS---EEEECGGGG-TTSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH--H-
T ss_pred ccCC---------cCCc---eeeecccCC-CCcccccccccee-eeeccccCCccccCCCCcchhhhcccchhhcc--c-
Confidence 1111 1123 337899998 8888888887443 33322211 1122356777777666654221 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---CeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 037587 326 YMKENRKRLRKRKEMLVSGLKVAG---IRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNE 402 (464)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~~g---~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~ 402 (464)
....+.+++.-+++.+.|+++. +.-.. .-|++.-+++.... . .....++.++|+++.+..
T Consensus 296 --~~~~~~v~~~g~~l~~~L~~l~~~~v~~vr-g~Gl~~~ie~~~~~-------~-~~~~~~~~~~g~l~~~~g------ 358 (387)
T d1vefa1 296 --TRLWERAAELGPWFMEKLRAIPSPKIREVR-GMGLMVGLELKEKA-------A-PYIARLEKEHRVLALQAG------ 358 (387)
T ss_dssp --HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE-EETTEEEEEESSCS-------H-HHHHHHHHHHCEECEESS------
T ss_pred --ccccchHhhhhHHHHHHHHhcCCCceEEEe-ecceEEEEEEeCCc-------h-HHHHHHHHHCCCeEEecC------
Confidence 1123334445556666776542 11112 22456667775321 1 233444456788876532
Q ss_pred CCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 403 PGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 403 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
++.+|++.+. ++++++++++++|++++
T Consensus 359 ~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 359 PTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 4578998765 79999999999999876
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.56 E-value=5.6e-13 Score=130.26 Aligned_cols=346 Identities=14% Similarity=0.093 Sum_probs=188.0
Q ss_pred CCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCCC
Q 037587 29 YDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGNK 104 (464)
Q Consensus 29 y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 104 (464)
|..+.+...+||+..+ ...+ ..|.+.+++.+.. .... |..........+.+++.+.+..
T Consensus 32 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~-------------~~~~-~~~~~~~~~~~~~~~~~~~~~~--- 94 (404)
T d1z7da1 32 FVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQA-------------KNLT-ICSRAFFSVPLGICERYLTNLL--- 94 (404)
T ss_dssp EEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHH-------------TTCS-CCCTTSEEHHHHHHHHHHHHHH---
T ss_pred EEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHH-------------HhCC-CcccccchHHHHHHHHhhhhcc---
Confidence 4444556788998765 3334 3566777666542 1111 1111122334445555555432
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhc----------CCCCeEEEcCCCCCChhhhcccCCCcEEE---EEecCCCCCcc-
Q 037587 105 VKFDPNKLVLTAGSTAANETLMFCLA----------DPGDAFLLPTPYYPGFDRDLKWRPGVEIV---PIHCSSSNGFR- 170 (464)
Q Consensus 105 ~~~~~~~i~it~G~~~al~~~~~~l~----------~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~---~v~~~~~~~~~- 170 (464)
..+.+.++++++++...+++... .....++....+|++.........+.... ..|..+ ..+.
T Consensus 95 ---~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 170 (404)
T d1z7da1 95 ---GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAP-QFSKV 170 (404)
T ss_dssp ---TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEE
T ss_pred ---ccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCc-ccccc
Confidence 35678899999999998887642 12246777777776554332221111111 111100 0111
Q ss_pred --cCHHHHHHHHHHHhhcCCceEEEEEeCC-CCCCCCC-CCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccch
Q 037587 171 --ITISALENAYQQAQTLNLKVKGVLITNP-SNPLGTA-MTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISI 246 (464)
Q Consensus 171 --~d~~~l~~~i~~~~~~~~~~~~vil~~P-~NPtG~~-~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~ 246 (464)
-+.+.++..+. ..++.+|++ -| ....|.. .+++-+++|.++|+++|+++|.||+..++ +..+ .+..
T Consensus 171 ~~~~~~~l~~~~~-----~~~iAavi~-EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGf--gRtG-~~~~- 240 (404)
T d1z7da1 171 PYDDLEALEEELK-----DPNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGL--GRTG-KLLC- 240 (404)
T ss_dssp CTTCHHHHHHHHT-----STTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT--TTTS-SSSG-
T ss_pred ccchHHHHHHHhc-----CCCEEEEEE-EEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCC--Cccc-cccc-
Confidence 14555555543 236665555 56 4556765 46667999999999999999999999874 3221 1111
Q ss_pred hhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCc-cEEEEEEecCHHHHHHHHHhcc--cCCCChHHHHHHHHHcCCchhh
Q 037587 247 MEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPG-FRVGMIYSNNERVVSAATKMSS--FGLVSSQTQYLLSRMLSDKKFT 323 (464)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~G-lRiG~l~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~ 323 (464)
.+... ..+.++ +++|.+| .| +.+|.+++ ++.+.+.+..... .+..++++.+++.+.|+--.-
T Consensus 241 ~e~~g---------v~PDiv---t~gK~l~-gG~~p~~~v~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~- 305 (404)
T d1z7da1 241 VHHYN---------VKPDVI---LLGKALS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN- 305 (404)
T ss_dssp GGGGT---------CCCSEE---EECGGGG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred ccccC---------CCCCEE---EEccccc-CCCCCcccccc-hHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-
Confidence 11111 112333 8999998 55 88999998 4445443332211 123567777777776653111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 037587 324 CNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEP 403 (464)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~ 403 (464)
+...+...+.-....+.+.+.++++++......-|+++.+.+..... ...++...++ ++||++.|.. .
T Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-----~~~~~~~~l~-~~Gl~~~~~~------~ 373 (404)
T d1z7da1 306 EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV-----NVLDICLKLK-ENGLITRDVH------D 373 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTC-----CHHHHHHHHH-HTTEECCEET------T
T ss_pred chhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-----cHHHHHHHHH-hCCeEEecCC------C
Confidence 12233333333334445556666655422212234566677754211 1224556665 6799987642 4
Q ss_pred CeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 404 GWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 404 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
+.+|++.+. ++++++++++++|++++++.
T Consensus 374 ~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 374 KTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 569998765 69999999999999999875
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.55 E-value=3.3e-12 Score=123.51 Aligned_cols=303 Identities=15% Similarity=0.103 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC----cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhccc-----C----
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPN----KLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKW-----R---- 153 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~----~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-----~---- 153 (464)
+++.....+...+.++ .+++ +|-. .+++.|...++.+|++|||+|+..+...+++...-.. .
T Consensus 76 D~iE~la~~ra~~lF~----~~~~~~~anVqp-~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~ 150 (470)
T d1rv3a_ 76 DELETLCQKRALQAYG----LDPQCWGVNVQP-YSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATS 150 (470)
T ss_dssp HHHHHHHHHHHHHHTT----CCTTTEEEECCC-SSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred HHHHHHHHHHHHHHhC----CChhhccccccc-cCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCccccc
Confidence 3344334455555555 3332 3333 4566777788889999999999998887766543211 1
Q ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccc
Q 037587 154 PGVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSG 233 (464)
Q Consensus 154 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~ 233 (464)
...+.+.++++++ ...+|.+++++..++. +|++|++..-.+|- .++ .+++.++|.+.|.+++.|-++..
T Consensus 151 ~~~~~~~y~v~~~-~~~IDyd~l~~~a~~~-----kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~a 219 (470)
T d1rv3a_ 151 IFFESMAYKVNPD-TGYIDYDRLEENARLF-----HPKLIIAGTSCYSR--NLD---YGRLRKIADENGAYLMADMAHIS 219 (470)
T ss_dssp HHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECTTTH
T ss_pred ceeEeeEEEEecc-cCcccHHHHHHHHHhh-----CcceEeechhhccc--cCC---HHHHHHHHhccCCeEEecchhhh
Confidence 0246778888764 4569999999998875 89987776444442 344 55566667788999999999965
Q ss_pred cccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCH--------------HHHHHHHHh
Q 037587 234 TVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNE--------------RVVSAATKM 299 (464)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~--------------~~~~~~~~~ 299 (464)
....+. .+++.... ..++..|.+|+| +|-|-|.|.+.++ .+.+.+...
T Consensus 220 GLIA~g--~~~sPl~~--------------aDvvt~tTHKtl--rGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~a 281 (470)
T d1rv3a_ 220 GLVVAG--VVPSPFEH--------------CHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA 281 (470)
T ss_dssp HHHHHT--SSCCGGGT--------------CSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHH
T ss_pred hhcccc--ccCChhhe--------------eeeeeeehhhhc--cCCcceEEEEccccccccccccchhHHHHHHHHhhh
Confidence 433333 23343322 236789999998 7888899987542 245545443
Q ss_pred cccCC-CCh-HHHH-HHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeec-CCccEEEEEecCcc-cccCCh
Q 037587 300 SSFGL-VSS-QTQY-LLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLK-SNAGLFCWVDMRHL-LVSNTF 374 (464)
Q Consensus 300 ~~~~~-~s~-~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~f~~~~l~~~-~~~~~~ 374 (464)
.-++. .++ ..+. +.+.++... ......+..+++.++.+.|.+.|.+.|+++.. ...+..+++++... .+.
T Consensus 282 vFPg~qggph~~~IAa~Ava~~ea--~~~~fk~Ya~qvv~NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g--- 356 (470)
T d1rv3a_ 282 VFPGLQGGPHNHAIAGVAVALKQA--MTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDG--- 356 (470)
T ss_dssp HTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCH---
T ss_pred cCccccccchhhHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHhCCceeccCCCCCceEEEeecccCCcH---
Confidence 32221 222 1111 111112110 01123444555666778899999999998874 34456778888542 121
Q ss_pred hHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEeec-----CCHHHHHHHHHHHHHHHHhhC
Q 037587 375 EAEKELWKKIIFEVGLNIS----PGSSCHCNEPGWFRICFAN-----ITEETLQVALQRIKVFAQSCN 433 (464)
Q Consensus 375 ~~~~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~~ 433 (464)
..+..+|++.||.+. |+.. .+..++.+||+... ..++++.++.+.|.++++-.+
T Consensus 357 ----~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~~~~ 419 (470)
T d1rv3a_ 357 ----GRAEKVLEACSIACNKNTCPGDK-SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTV 419 (470)
T ss_dssp ----HHHHHHHHHTTEECEEECCSSCS-CTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCcEECCCcCCCCC-CCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 246677888999874 5543 22235679999844 367999999999988886443
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.55 E-value=2.4e-13 Score=132.16 Aligned_cols=291 Identities=13% Similarity=0.153 Sum_probs=182.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~ 164 (464)
..++.+.+|++++ ...++.++++|.|+.+++.++ +++||+|+++..+|......+... |++++.++.+
T Consensus 36 v~~fE~~~a~~~g----------~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~~~-g~~p~~~d~~ 104 (384)
T d1b9ha_ 36 VNSFEREFAAHHG----------AAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRL-GAVTVPVDVD 104 (384)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccccccccc-cccccccccc
Confidence 4778888888864 446889999999999999987 689999999999999888887776 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccc-cCCCCCCc
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTV-FDSPSSSF 243 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~-~~~~~~~~ 243 (464)
+ ..+.+|++.+++.+.. ++++|+++ +..|... ++.++.++|+++++++|+|.+++... +.+.
T Consensus 105 ~-~~~~~d~~~~~~~i~~------~tk~i~~~---~~~g~~~---d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~---- 167 (384)
T d1b9ha_ 105 A-ATYNLDPEAVAAAVTP------RTKVIMPV---HMAGLMA---DMDALAKISADTGVPLLQDAAHAHGARWQGK---- 167 (384)
T ss_dssp T-TTCCBCHHHHHHHCCT------TEEEECCB---CGGGCCC---CHHHHHHHHHHHTCCBCEECTTCTTCEETTE----
T ss_pred c-cccccchhhhcccccc------cccccccc---ccccccc---ccccchhhhhhhhhhhhhhhceecccccCCE----
Confidence 4 4678999999987654 88887665 5566654 57778889999999999999997432 1111
Q ss_pred cchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHHHHHHHHhccc-------------------CC
Q 037587 244 ISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERVVSAATKMSSF-------------------GL 304 (464)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~-------------------~~ 304 (464)
.+... .+-.++-.+.+|.++ .| .-|.++++++.+.+.++.+... ..
T Consensus 168 -~~g~~------------g~~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~r 232 (384)
T d1b9ha_ 168 -RVGEL------------DSIATFSFQNGKLMT-AG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMR 232 (384)
T ss_dssp -EGGGS------------SSCEEEECCTTSSSC-SS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCB
T ss_pred -ecCcc------------cccceeccccccccc-cc-ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 11111 122333344588875 33 3688888777776655443211 11
Q ss_pred CChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec----C--CccEEEEEecCcccccCChhHH
Q 037587 305 VSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK----S--NAGLFCWVDMRHLLVSNTFEAE 377 (464)
Q Consensus 305 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~----~--~~g~f~~~~l~~~~~~~~~~~~ 377 (464)
++.+..+++...|+.- ++.++ .-++..+++.+.|.+. ++.... . ...++..+.++.... ..-
T Consensus 233 ms~l~Aaig~~qL~~l---d~~~~----~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~R 301 (384)
T d1b9ha_ 233 LNEFSASVLRAQLARL---DEQIA----VRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE----ERR 301 (384)
T ss_dssp CBHHHHHHHHHHHTTH---HHHHH----HHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH----HHH
T ss_pred cccchhhhhhhhhhhc---ccchh----hhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc----ccH
Confidence 3334333344444331 33333 2234555667777765 443221 1 111233344442111 111
Q ss_pred HHHHHHHHHhcCeEEeCCCC----------CCCCC-----------------CCeEEEEeec-CC-HHHHHHHHHHHHHH
Q 037587 378 KELWKKIIFEVGLNISPGSS----------CHCNE-----------------PGWFRICFAN-IT-EETLQVALQRIKVF 428 (464)
Q Consensus 378 ~~l~~~ll~~~gI~v~pg~~----------f~~~~-----------------~~~~Ris~~~-~~-~e~l~~~l~~l~~~ 428 (464)
.++...| +++||..++... ++... ...+.|-+.. ++ +++++..++.|+++
T Consensus 302 d~l~~~L-~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~ 380 (384)
T d1b9ha_ 302 NALVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADA 380 (384)
T ss_dssp HHHHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHH
Confidence 2466665 578998875421 00000 1246666654 55 57999999999999
Q ss_pred HHh
Q 037587 429 AQS 431 (464)
Q Consensus 429 l~~ 431 (464)
+++
T Consensus 381 l~~ 383 (384)
T d1b9ha_ 381 VAR 383 (384)
T ss_dssp HHH
T ss_pred Hhh
Confidence 875
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=1.4e-12 Score=125.34 Aligned_cols=216 Identities=16% Similarity=0.188 Sum_probs=140.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhc----ccCC
Q 037587 79 LFQDYHGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDL----KWRP 154 (464)
Q Consensus 79 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~~ 154 (464)
.|... | ..-++.+.+.+....+ .+..++++++..++..+ ..++.+||.|++....|++....+ ...
T Consensus 48 ~YsR~-g-nPT~~~lE~~la~LE~------~~~a~~~sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~- 117 (393)
T d1n8pa_ 48 EYSRS-Q-NPNRENLERAVAALEN------AQYGLAFSSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAH- 117 (393)
T ss_dssp CBTTT-C-CHHHHHHHHHHHHHTT------CSEEEEESCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTT-
T ss_pred eeeCC-C-ChHHHHHHHHHHHHhC------CceEEEecCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcc-
Confidence 46543 3 3444455555543322 34567777778888765 467789999999999998765443 333
Q ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHh----hCCeEEEEecc
Q 037587 155 GVEIVPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSK----SKRIHIVSDEI 230 (464)
Q Consensus 155 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~----~~~~~lI~Dea 230 (464)
|.++..++ .+.+++++.++ +++++|++-.|.||+..+.+. ++++++|+ ++|+++|+|..
T Consensus 118 gi~~~~~~--------~~~~~~~~~i~------~~t~lv~~EspsNP~l~v~Di---~~ia~~a~~~~~~~g~~lvVDnT 180 (393)
T d1n8pa_ 118 GVETSFTN--------DLLNDLPQLIK------ENTKLVWIETPTNPTLKVTDI---QKVADLIKKHAAGQDVILVVDNT 180 (393)
T ss_dssp CSCCEEES--------SHHHHHHHHSC------SSEEEEEECSSCTTTCCCCCH---HHHHHHHHHHTTTTTCEEEEECT
T ss_pred cceeEEee--------cchHHHHHHhh------hhcceeEecCcchhhhhccch---hhhhhhhhhhcccCCceEEEecC
Confidence 77666553 13466777664 389999999999999999865 45555555 67999999999
Q ss_pred ccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCC-CCccEEEEEEecCHHHHHHHHHhcc-cC-CCCh
Q 037587 231 YSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFS-MPGFRVGMIYSNNERVVSAATKMSS-FG-LVSS 307 (464)
Q Consensus 231 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g-~~GlRiG~l~~~~~~~~~~~~~~~~-~~-~~s~ 307 (464)
++...+-.+ ..+ +..|++.|.+|.++ -..+=.|.++..++.+.+.++.... ++ .+++
T Consensus 181 ~atP~~~~P-------l~~-------------GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p 240 (393)
T d1n8pa_ 181 FLSPYISNP-------LNF-------------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP 240 (393)
T ss_dssp TTHHHHCCG-------GGG-------------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCH
T ss_pred ccCcccCCc-------hhh-------------CCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCCh
Confidence 874322111 112 45688999999984 3446678887767766555544332 23 3567
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037587 308 QTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA 348 (464)
Q Consensus 308 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 348 (464)
.....+..-++.- ..+.++..++...+.+.|+.+
T Consensus 241 ~~a~ll~rgl~Tl-------~lR~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 241 FDAWLTHRGLKTL-------HLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhCCcch-------hhHHHHHHHHHHHHHHHHHhc
Confidence 7777776666653 334445556667788888654
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.46 E-value=4e-12 Score=126.07 Aligned_cols=353 Identities=12% Similarity=0.078 Sum_probs=189.1
Q ss_pred CCCCCCCCCceEEeecc--cccc--cHHHHHHHHHhhhhhHHhhhcccccccccccCCCCCCcHHHHHHHHHHHHHHcCC
Q 037587 28 PYDQLHNPSGIIQMGLA--ENQL--SFDLLESWLASNQEAVELKRNGESLFRELALFQDYHGFPDAKKELVKLMARIRGN 103 (464)
Q Consensus 28 ~y~~~~~~~~~i~l~~~--~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 103 (464)
.|..+.....+|||..+ .+.+ ..|.+.+++.+..+.... .....+.. .....+.+.+++.+.....
T Consensus 45 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--------~~~~~~~~-~~~~~~a~~lae~l~~~~~- 114 (461)
T d1ohwa_ 45 NYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTF--------INRPALGI-LPPENFVEKLRESLLSVAP- 114 (461)
T ss_dssp TEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHH--------HCCCCTTT-SCBTTHHHHHHHTGGGGCC-
T ss_pred CEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhh--------cccccccc-cchHHHHHHHHHHHHhhhc-
Confidence 35555567788998654 3334 346677777664322100 00111111 1234566777777654322
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhc----------------------------CCCCeEEEcCCCCCChhhhcccCCC
Q 037587 104 KVKFDPNKLVLTAGSTAANETLMFCLA----------------------------DPGDAFLLPTPYYPGFDRDLKWRPG 155 (464)
Q Consensus 104 ~~~~~~~~i~it~G~~~al~~~~~~l~----------------------------~~gd~Vlv~~p~y~~~~~~~~~~~g 155 (464)
-..+.+++++++++++..+++... .+...|+...-+|++....+....|
T Consensus 115 ---~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg 191 (461)
T d1ohwa_ 115 ---KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTH 191 (461)
T ss_dssp ---TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCC
T ss_pred ---cCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccC
Confidence 234689999999999999887641 2235788888888875332221112
Q ss_pred c-------------EEEEEecCCCC-C---------cccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCC-CCCHHHH
Q 037587 156 V-------------EIVPIHCSSSN-G---------FRITISALENAYQQAQTLNLKVKGVLITNPSNPLGT-AMTHQEL 211 (464)
Q Consensus 156 ~-------------~~~~v~~~~~~-~---------~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~-~~s~~~l 211 (464)
- ...+.+..... . ...+.+.+++.+........++.+|++..-....|. ..|.+-+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl 271 (461)
T d1ohwa_ 192 SKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFF 271 (461)
T ss_dssp SCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHH
T ss_pred CcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHH
Confidence 1 11111100000 0 011245556665544444556766555433444554 5678889
Q ss_pred HHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHH
Q 037587 212 NHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNER 291 (464)
Q Consensus 212 ~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~ 291 (464)
++|.++|++||+++|.||++.++.-.+. +.....+ . . +..+.+ -+++|.++ .| +.... ..
T Consensus 272 ~~lr~lc~~~gillI~DEV~tG~gRtG~---~~~~e~~-g-i------~~~PDi---v~~gK~l~-~g----~~~~~-~~ 331 (461)
T d1ohwa_ 272 RKLRDISRKHGCAFLVDEVQTGGGSTGK---FWAHEHW-G-L------DDPADV---MTFSKKMM-TG----GFFHK-EE 331 (461)
T ss_dssp HHHHHHHHHTTCEEEEECTTTCSSTTSS---SSGGGGG-C-C------SSCCSE---EEECGGGS-SE----EEEEC-GG
T ss_pred HHHHHHHHhhCcceeccccccccccccc---ccccccc-c-c------ccCchh---hhhhhccc-cc----ccccc-cc
Confidence 9999999999999999999987422222 1221111 0 0 001222 38899886 43 34331 11
Q ss_pred HHHH-HHHhcccCCCChHHHHHHHHHcCC---chhhHHHHHHHHHHHHHHHHHHHHHHHhC-C-CeeecCCccEEEEEec
Q 037587 292 VVSA-ATKMSSFGLVSSQTQYLLSRMLSD---KKFTCNYMKENRKRLRKRKEMLVSGLKVA-G-IRCLKSNAGLFCWVDM 365 (464)
Q Consensus 292 ~~~~-~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g-~~~~~~~~g~f~~~~l 365 (464)
+... .......+..++++.+++.+.|+- .++ .++.++.-+.+.++. .+...++ . +.-.... |+++-+++
T Consensus 332 ~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l-~~~~~~~g~~l~~~l---~~l~~~~~~~i~~vrG~-Gl~~~ie~ 406 (461)
T d1ohwa_ 332 FRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDL-LSNAAHAGKVLLTGL---LDLQARYPQFISRVRGR-GTFCSFDT 406 (461)
T ss_dssp GSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHH---HHHHHHCTTTCEEEEEE-TTEEEEEC
T ss_pred cccccccccccccccccccchhhcccchhhhhhhH-HHHHHHHHHHHHHHH---HHHHhhCCCceEEeeee-eEEEEEEc
Confidence 1110 001111223556666666655542 222 223333333333332 2222222 1 2212223 56777888
Q ss_pred CcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 366 RHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
+.. ....+++..++ ++||++.+.. +..+||.... +++++++.++++|.+++.+
T Consensus 407 ~~~------~~~~~i~~~~~-~~Gll~~~~~------~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 407 PDE------SIRNKLISIAR-NKGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp SSH------HHHHHHHHHHH-HTTEECEEET------TTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCH------HHHHHHHHHHH-HCCeEEeeCC------CCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 642 22235666665 6799998742 4579998765 7999999999999999875
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.41 E-value=2.5e-11 Score=117.24 Aligned_cols=172 Identities=15% Similarity=0.123 Sum_probs=120.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecC
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCL-ADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCS 164 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~ 164 (464)
...+.+.++++++ ...++.++++|.|+.+++.++ +++||+|++|..+|......+... |++++.++++
T Consensus 23 ~~~fE~~~~~~~~----------~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~~-g~~pv~~Di~ 91 (374)
T d1o69a_ 23 VNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL-KAKPVFIDCD 91 (374)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT-TCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhhc-cceeEecccc
Confidence 4788888888875 346889999999999999998 788999999999999888888777 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCcc
Q 037587 165 SSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFI 244 (464)
Q Consensus 165 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~ 244 (464)
+. .+..+.+..+.. . ...+++++|++++. .|... +++++.++|+++|++||+|.+++ ++..- .-.
T Consensus 92 ~~-~~~~~~~~~~~~-~---~~~~~~~aii~~~~---~G~~~---d~~~i~~~~~~~~i~vIED~a~a---~g~~~-~~~ 156 (374)
T d1o69a_ 92 ET-YNIDVDLLKLAI-K---ECEKKPKALILTHL---YGNAA---KMDEIVEICKENDIVLIEDAAEA---LGSFY-KNK 156 (374)
T ss_dssp TT-SSBCHHHHHHHH-H---HCSSCCCEEEEECG---GGCCC---CHHHHHHHHHHTTCEEEEECTTC---TTCEE-TTE
T ss_pred cc-cccccccccccc-h---hccccccccccccc---ccchh---hhHHHHHHhhccCcchhhhhhhh---hcceE-CCe
Confidence 42 233333333221 1 12457888888754 56554 57778889999999999999998 33210 001
Q ss_pred chhhhhhccCcCCCCCCCCcEEEEcCC--CcCCCCCccEEEEEEecCHHHHHHHHHh
Q 037587 245 SIMEAVMDRNIDESDDLWSRIHIVYSL--SKDFSMPGFRVGMIYSNNERVVSAATKM 299 (464)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~vi~l~S~--SK~~g~~GlRiG~l~~~~~~~~~~~~~~ 299 (464)
.+.. -..+.+.|| +|.++..| -|.+++.++.+.+.++.+
T Consensus 157 ~~G~--------------~gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~ 197 (374)
T d1o69a_ 157 ALGT--------------FGEFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFY 197 (374)
T ss_dssp ETTS--------------SSSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHH
T ss_pred ecCC--------------CCceEEEeccCcccccccc--ceeehhhhHHHHHhhccc
Confidence 1111 113445566 58886443 488888888877766554
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.40 E-value=2.6e-11 Score=117.03 Aligned_cols=290 Identities=12% Similarity=0.062 Sum_probs=176.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCC--CeEEEcCCCCCChhhhcccCCCcEEEEEe
Q 037587 86 FPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-DPG--DAFLLPTPYYPGFDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 86 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~g--d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~ 162 (464)
..++.+.++++++ ...++.++++|.|+.+++.++- .+| |.|+++.-+|......+... |++++.++
T Consensus 33 v~~fE~~~~~~~g----------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~~-G~~pv~vD 101 (371)
T d2fnua1 33 SLLFEEALCEFLG----------VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYTPVFAG 101 (371)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCEEEECC
T ss_pred HHHHHHHHHHHHC----------cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeecc-Cccccccc
Confidence 4778888888875 3468899999999999999974 344 47999999999877777766 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
++++. .++.+.+++.+. +++++|+++ +..|...+ ++++.++|+++++++|+|.+++....-..
T Consensus 102 i~~~~--~~~~~~~~~~~~------~~t~avi~v---h~~G~~~~---~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~--- 164 (371)
T d2fnua1 102 IKNDG--NIDELALEKLIN------ERTKAIVSV---DYAGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQN--- 164 (371)
T ss_dssp BCTTS--SBCGGGSGGGCC------TTEEEEEEE---CGGGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETT---
T ss_pred ccccc--cccchhhhhhcc------chhhccccc---cccccccc---cccccccccccchhhccchhhccCceecc---
Confidence 87543 345566665543 489999887 45677654 66778888899999999999984321111
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCC--CcCCCCCccEEEEEEecCHHHHHHHHHhcccC-----------------
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSL--SKDFSMPGFRVGMIYSNNERVVSAATKMSSFG----------------- 303 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~--SK~~g~~GlRiG~l~~~~~~~~~~~~~~~~~~----------------- 303 (464)
..... -..+.+.|| +|.++..+ -|.++++++.+.+.++.....+
T Consensus 165 -~~~G~--------------~g~~~~~Sf~~~K~l~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n 227 (371)
T d2fnua1 165 -KKVGG--------------FALASVFSFHAIKPITTAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHN 227 (371)
T ss_dssp -EETTS--------------SSSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCB
T ss_pred -ccCCc--------------ccccccccccccccccccc--ceEEEeechhhhhhccccccccccccccccccccccccc
Confidence 11110 112234455 89886332 6889998888877766543221
Q ss_pred -CCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecC----Ccc-EEEEEecCcccccCChhH
Q 037587 304 -LVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKS----NAG-LFCWVDMRHLLVSNTFEA 376 (464)
Q Consensus 304 -~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g-~f~~~~l~~~~~~~~~~~ 376 (464)
.++.+..+.+..-|+.- +++++. | ++....+.+.|.+. ++....+ ... +...+.+..... ..
T Consensus 228 ~r~sel~Aaigl~qL~~l---~~~~~~-R---~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~ 296 (371)
T d2fnua1 228 FRLNEIQSALGLSQLKKA---PFLMQK-R---EEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF----TC 296 (371)
T ss_dssp CCCCHHHHHHHHHHHTTH---HHHHHH-H---HHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG----GG
T ss_pred ccccchhhhhhhhhhhhc---cchhhh-h---hhhhhhhcccccccccccccccccccccccccccccccccch----hH
Confidence 13333333344444432 333332 2 23334456667665 3333211 111 112223332111 11
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCC----------CCC---------CCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 377 EKELWKKIIFEVGLNISPGSSCH----------CNE---------PGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 377 ~~~l~~~ll~~~gI~v~pg~~f~----------~~~---------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
..++...| +++||.+++....- ... ...+.|-+.. +++++++..++.|.+++++.
T Consensus 297 r~~~~~~L-~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 297 KKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp HHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 12455555 57899987643210 001 1246665543 68999999999999998863
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.1e-10 Score=111.62 Aligned_cols=290 Identities=12% Similarity=0.048 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC-CcEEEeCChHHHHHHHHH-HhcCCCCeEEEcCCCCCCh--hhhcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDP-NKLVLTAGSTAANETLMF-CLADPGDAFLLPTPYYPGF--DRDLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~-~l~~~gd~Vlv~~p~y~~~--~~~~~~~~g~~~~~v~ 162 (464)
.+.|+.|+++++ ++. ..|++++|++++...+.. .+..+++.+++..-.+... ....+.. |..++.+.
T Consensus 49 ~~~r~~l~~l~~--------~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 119 (360)
T d1bjna_ 49 EEAEKDFRDLLN--------VPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKY-CTPNVFDA 119 (360)
T ss_dssp HHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTT-SEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHhhc-Cccceeec
Confidence 456666666664 433 368888887776665544 4667778888776655332 2223333 66655554
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
.+... .++.+.++..+ ..+++++++++.+|-||...+... + .+..+++.+++|.+.+ +... +
T Consensus 120 ~~~~~--~~~~~~~~~~~------~~~~~~v~v~~~~~~t~~~~~~~~---i--~~~~~~~~v~vDa~~~---~~~~--~ 181 (360)
T d1bjna_ 120 KVTVD--GLRAVKPMREW------QLSDNAAYMHYCPNETIDGIAIDE---T--PDFGADVVVAADFSST---ILSR--P 181 (360)
T ss_dssp EEEET--TEEEECCGGGC------CCCSSCSCEEECSEETTTTEECCC---C--CCCCTTCCEEEECTTT---TTSS--C
T ss_pred cccCC--Ccchhhhhhhh------ccCCceeEEEecccccccCccccc---e--ecccccceeeeeeecc---ccce--e
Confidence 43222 12333333332 236777777778898988765433 2 2456688899998776 3322 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH------------HHHHHHhcccCCCChHHH
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV------------VSAATKMSSFGLVSSQTQ 310 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~------------~~~~~~~~~~~~~s~~~q 310 (464)
.+. .+..+++.|.+|.+++++.-.+++.. +... .........+........
T Consensus 182 -vd~---------------~~~dv~~~ss~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (360)
T d1bjna_ 182 -IDV---------------SRYGVIYAGAQKNIGPAGLTIVIVRE-DLLGKANIACPSILDYSILNDNGSMFNTPPTFAW 244 (360)
T ss_dssp -CCG---------------GGCSEEEEETTTTTSSTTCEEEEEEG-GGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHH
T ss_pred -eee---------------ccceeEEEEcccccccCCCceeEeee-hhhhhccccCCcchhhHHHHhhhhhccccccchH
Confidence 111 13345678999998866544443333 2111 011111111222222221
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeee-cC---CccEEEEEecCcccccCChhHHHHHHHHHHH
Q 037587 311 YLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCL-KS---NAGLFCWVDMRHLLVSNTFEAEKELWKKIIF 386 (464)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~---~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~ 386 (464)
..+..+... ...........+...+....+...+...+.... +. .....+.+.++.... ..++.. +++
T Consensus 245 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~------~~~~~~-~l~ 316 (360)
T d1bjna_ 245 YLSGLVFKW-LKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSAL------DKLFLE-ESF 316 (360)
T ss_dssp HHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGG------HHHHHH-HHH
T ss_pred HHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCccc------HHHHHH-HHH
Confidence 111111110 000112233333444444444555555433222 11 112245556664321 223444 457
Q ss_pred hcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhh
Q 037587 387 EVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 387 ~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
++||.++.|... -+.||||+.. .++|+++.+++.|+++.+++
T Consensus 317 ~~Gi~~~~G~~~----~g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 317 AAGLHALKGHRV----VGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp HTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCEeecCCCc----cCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 889999887432 2349999977 79999999999999988765
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.18 E-value=7.5e-11 Score=113.20 Aligned_cols=272 Identities=14% Similarity=0.126 Sum_probs=145.6
Q ss_pred cEEEeCChHHHH-HHHHHHhcCCCCeEEEcCCCCC-C-hhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC
Q 037587 111 KLVLTAGSTAAN-ETLMFCLADPGDAFLLPTPYYP-G-FDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 111 ~i~it~G~~~al-~~~~~~l~~~gd~Vlv~~p~y~-~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
.|++++|++.+. ..+...+..+|+++++..-... . +...+... |..+..+..+..+ .++++.+++.+.
T Consensus 68 ~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~~~------ 138 (361)
T d2c0ra1 68 KVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLI-GDTHVAASSEASN--YMTLPKLQEIQL------ 138 (361)
T ss_dssp EEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHH-SCEEEEEECGGGT--TCSCCCGGGCCC------
T ss_pred EEEEECCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhhhc-Cceeeeecccccc--ccchhhhhhhcc------
Confidence 688877765555 5666677888998887654332 1 22334444 8888877765432 345566655432
Q ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCCCCCCcEEE
Q 037587 188 LKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESDDLWSRIHI 267 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 267 (464)
..+.+.+ +|.||...+.. ++.++|+++|+++++|.+.+ ++.. + .++.+ ..+.
T Consensus 139 -~~~~~~v---~~~tg~~~~~~---~i~~~~~~~~al~~vDavss---~g~~--~-id~~~---------------~di~ 190 (361)
T d2c0ra1 139 -QDNAAYL---HLTSNETIEGA---QFKAFPDTGSVPLIGDMSSD---ILSR--P-FDLNQ---------------FGLV 190 (361)
T ss_dssp -CTTEEEE---EEESEETTTTE---ECSSCCCCTTSCEEEECTTT---TTSS--C-CCGGG---------------CSEE
T ss_pred -cCcceEE---EEecccceecc---eEEEeeccCCceEEEEeecc---cccc--c-ccccc---------------ceeE
Confidence 2222333 46788887644 56778999999999999997 4433 1 22211 2244
Q ss_pred EcCCCcCCCCCccEEEEEEecCHH------------HHHHHHHhcccCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q 037587 268 VYSLSKDFSMPGFRVGMIYSNNER------------VVSAATKMSSFGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLR 335 (464)
Q Consensus 268 l~S~SK~~g~~GlRiG~l~~~~~~------------~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 335 (464)
+.|.+|.++++|.-.+++.. ... ...............+.....+....... .............+
T Consensus 191 ~~s~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 268 (361)
T d2c0ra1 191 YAGAQKNLGPSGVTVVIVRE-DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI-EERGGLEGVQQANR 268 (361)
T ss_dssp EEETTTTTCCSSCEEEEEEG-GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH-HHTTHHHHHHHHHH
T ss_pred EEecccccccccCcEEEEEh-HHhhhCccccccccccccccccccccccccceeeehhhhHHHhh-hhccchHHHHHHHH
Confidence 56789999877754443332 110 01111111112222222111111111100 00111222333334
Q ss_pred HHHHHHHHHHHhCC-C-eeec---CCccEEEEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEe
Q 037587 336 KRKEMLVSGLKVAG-I-RCLK---SNAGLFCWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICF 410 (464)
Q Consensus 336 ~~~~~l~~~l~~~g-~-~~~~---~~~g~f~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~ 410 (464)
..+..+.......+ . .... ..+..-+.+.+++.. ...++. ..|+++||.+++|... -+.|||++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~------~~~~~~-~~L~~~GI~~~~G~~~----~g~~RIs~ 337 (361)
T d2c0ra1 269 KKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE------LEKEFV-KASEQEGFVGLKGHRS----VGGLRASI 337 (361)
T ss_dssp HHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH------HHHHHH-HHHHHTTEESCBCCTT----TCSEEEEC
T ss_pred HHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcc------cHHHHH-HHHHHCCCEEecCCCc----CCeEEEEe
Confidence 44444444444432 1 1111 112234556666432 222444 4557889999988532 12499999
Q ss_pred ec-CCHHHHHHHHHHHHHHHHhh
Q 037587 411 AN-ITEETLQVALQRIKVFAQSC 432 (464)
Q Consensus 411 ~~-~~~e~l~~~l~~l~~~l~~~ 432 (464)
.. ++.|+++.+++.|+++.++.
T Consensus 338 ~~~~~~edv~~Lv~~l~~~~~~~ 360 (361)
T d2c0ra1 338 YNAVPYESCEALVQFMEHFKRSR 360 (361)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc
Confidence 76 79999999999999987754
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.97 E-value=3.1e-09 Score=101.36 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC-cEEEeCChHHHHHHHHHH-hcCCCCeEEEcCCCCCC--hhhhcccCCCcEEEEEe
Q 037587 87 PDAKKELVKLMARIRGNKVKFDPN-KLVLTAGSTAANETLMFC-LADPGDAFLLPTPYYPG--FDRDLKWRPGVEIVPIH 162 (464)
Q Consensus 87 ~~lr~~ia~~~~~~~~~~~~~~~~-~i~it~G~~~al~~~~~~-l~~~gd~Vlv~~p~y~~--~~~~~~~~~g~~~~~v~ 162 (464)
.+.|+.|+++++ ++.+ .|++++|++++...+... +..+++.+++....+.. +...+... +..++...
T Consensus 51 ~~~r~~l~~l~~--------~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~-~~~~~~~~ 121 (360)
T d1w23a_ 51 EQAQNLLRELLQ--------IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLL-GETHIAAS 121 (360)
T ss_dssp HHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTT-SEEEEEEE
T ss_pred HHHHHHHHHHhC--------CCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHh-hhcceeec
Confidence 456777777775 4444 688889988777755544 55677888877654432 12223333 66555555
Q ss_pred cCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCC
Q 037587 163 CSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSS 242 (464)
Q Consensus 163 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~ 242 (464)
...... ..++.++.... ....+.+ +|-||...+ ++++.++|+++|+++|+|.+.+ ++.. +
T Consensus 122 ~~~~~~--~~~~~~~~~~~-------~~~~~~~---~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs---~g~~--~ 181 (360)
T d1w23a_ 122 TKANSY--QSIPDFSEFQL-------NENDAYL---HITSNNTIY---GTQYQNFPEINHAPLIADMSSD---ILSR--P 181 (360)
T ss_dssp CGGGTS--CSCCCGGGCCC-------CTTEEEE---EEESEETTT---TEECSSCCCCCSSCEEEECTTT---TTSS--C
T ss_pred cccccc--cchhhhhhccc-------cccccee---EecCCcccc---ceeeeeccccceeeEEeecccc---cccc--c
Confidence 432111 22333332211 2222233 466888866 4567788999999999999998 4333 1
Q ss_pred ccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCCccEEEEEEecCHHH------------HHHHHHhcccCCCChHHH
Q 037587 243 FISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMPGFRVGMIYSNNERV------------VSAATKMSSFGLVSSQTQ 310 (464)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~GlRiG~l~~~~~~~------------~~~~~~~~~~~~~s~~~q 310 (464)
..+. .++. .+.+++|.++++|. .|+++..+... ..................
T Consensus 182 -id~~-------------~~~v--d~~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (360)
T d1w23a_ 182 -LKVN-------------QFGM--IYAGAQKNLGPSGV-TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSI 244 (360)
T ss_dssp -CCGG-------------GCSE--EEEETTTTTSCTTC-EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHH
T ss_pred -cccc-------------cccc--eEEeeccccccCCc-ceeeEechhhhcccccCCcchhhhhhhhhhhhcccccceee
Confidence 2221 1233 34466677665553 44444321110 000111111122222211
Q ss_pred HH----HHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeec----CCccEEEEEecCcccccCChhHHHHHH
Q 037587 311 YL----LSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLK----SNAGLFCWVDMRHLLVSNTFEAEKELW 381 (464)
Q Consensus 311 ~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~----~~~g~f~~~~l~~~~~~~~~~~~~~l~ 381 (464)
.+ +..++.... .....+..+............. ...... ..+..-+.+.++.. ....++.
T Consensus 245 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~------~~~~~~~ 313 (360)
T d1w23a_ 245 YMLRNVLDWIKDLGG-----AEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------ELNQQFL 313 (360)
T ss_dssp HHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH------HHHHHHH
T ss_pred echhHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCC------ccHHHHH
Confidence 11 112222221 1111122222222233333322 122111 11122455566532 2223455
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHh
Q 037587 382 KKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQS 431 (464)
Q Consensus 382 ~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 431 (464)
. .+.++||.++.|..+. +.+|+|+.. ++.|+++.+++.|+++.++
T Consensus 314 ~-~l~~~GI~~~~G~~~~----ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 314 A-KAKEQGFVGLNGHRSV----GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp H-HHHHTTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHCCCeeeeCCCcc----CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 4 4568899998875432 349999865 6899999999999999875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=2.7e-08 Score=96.18 Aligned_cols=290 Identities=15% Similarity=0.166 Sum_probs=166.5
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCChhhh----cccCCCcEE
Q 037587 84 HGFPDAKKELVKLMARIRGNKVKFDPNKLVLTAGSTAANETLMFCLA-DPGDAFLLPTPYYPGFDRD----LKWRPGVEI 158 (464)
Q Consensus 84 ~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~----~~~~~g~~~ 158 (464)
+|..++--.+..++.+..| .+.-+.-.-.|++.....++.+.. ...+++++..-+++.+... +... |.++
T Consensus 104 QG~Lq~l~e~q~~l~eltG----md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~-g~~v 178 (437)
T d1wyua1 104 QGVLQATFEYQTMIAELAG----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAV-GAKL 178 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHT----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHT-TCEE
T ss_pred HHHHHHHHHHHHHHHHhhC----CCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccc-eeeE
Confidence 3544554555555555555 555566677888877776655532 2457899999888766543 3334 9999
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCC
Q 037587 159 VPIHCSSSNGFRITISALENAYQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDS 238 (464)
Q Consensus 159 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~ 238 (464)
+.++.+..+ .+.+++ +.++.+|++++| |-.|.. ++++++++++++.|.+++.|- .- .....
T Consensus 179 v~v~~~~~~---~~~~~~----------~~~~Aavmi~~P-nt~G~~---ed~~~i~~~~h~~G~l~~~~a-d~-~al~~ 239 (437)
T d1wyua1 179 LTLPLEGGR---TPLPEV----------GEEVGAVVVQNP-NFLGAL---EDLGPFAEAAHGAGALFVAVA-DP-LSLGV 239 (437)
T ss_dssp EEECCBTTB---CCCCCC----------CTTEEEEEEESS-CTTSBC---CCHHHHHHHHHHTTCEEEEEC-CT-TGGGT
T ss_pred Eeeeccccc---chhhhh----------ccceeEEEEccc-cccccc---cchHHHHHHhhhccceEEeee-ch-hhhhc
Confidence 999876322 222222 238899999999 557887 468889999999998777653 32 11221
Q ss_pred CCCCccchhhhhhccCcCCCCCCCCcEEEEcCCCcCCCCC----ccEEEEEEecCHHHHHHH------------------
Q 037587 239 PSSSFISIMEAVMDRNIDESDDLWSRIHIVYSLSKDFSMP----GFRVGMIYSNNERVVSAA------------------ 296 (464)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~l~S~SK~~g~~----GlRiG~l~~~~~~~~~~~------------------ 296 (464)
- .+..++ +-.+++++ +|.||.| |--.|++.+..+. .+.+
T Consensus 240 l----~~Pg~~-------------GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l-~r~lPgrivg~s~d~~G~~~~~ 300 (437)
T d1wyua1 240 L----KPPGAY-------------GADIAVGD-GQSLGLPMGFGGPHFGFLATKKAF-VRQLPGRLVSETVDVEGRRGFI 300 (437)
T ss_dssp B----CCHHHH-------------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGG-GGGCCSCCEEEEEBTTSCEEEE
T ss_pred c----cccccc-------------ccceEeec-cceeccccCCCcCccccccccchh-hccccccccccccccCCcccce
Confidence 1 122222 33455555 5555432 3446777774332 2111
Q ss_pred ----------HHh--cc-cCCCChHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCccEE--
Q 037587 297 ----------TKM--SS-FGLVSSQTQYLLSRMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVA-GIRCLKSNAGLF-- 360 (464)
Q Consensus 297 ----------~~~--~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~f-- 360 (464)
++. .+ .++...+....+...+.... .+-+++.-+....+..++.+.|.+. |+.+..+.. +|
T Consensus 301 l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG--~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~-~f~e 377 (437)
T d1wyua1 301 LTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-FFNE 377 (437)
T ss_dssp ECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-BCSE
T ss_pred eecccccccccccccccchhhHHHHHHHHHHHHhhhcC--cccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCC-eeeE
Confidence 111 11 11112222222222222111 3446666667777888899999886 777654332 23
Q ss_pred EEEecCcccccCChhHHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHH
Q 037587 361 CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNISPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFA 429 (464)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 429 (464)
+.++++. ...++.++|+ ++|+.. |...|....++.+.|+++- .+++++++++++|++++
T Consensus 378 f~v~~~~--------~~~~i~k~L~-d~G~~~-~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 378 FALALPK--------DPEAVRRALA-ERGFHG-ATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp EEEECSS--------CHHHHHHHHH-HTTCCC-CEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEECCC--------CHHHHHHHHH-hCCCCC-CcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 2344442 1235667765 679863 1112222235789999976 68999999999998864
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=6.4e-08 Score=94.67 Aligned_cols=287 Identities=13% Similarity=0.064 Sum_probs=162.9
Q ss_pred CCCCcEEEeCChHHHHHHHHHHh---cCCC----CeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHH
Q 037587 107 FDPNKLVLTAGSTAANETLMFCL---ADPG----DAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENA 179 (464)
Q Consensus 107 ~~~~~i~it~G~~~al~~~~~~l---~~~g----d~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 179 (464)
.+..|.-+-.|++.+-..++.+. .+.| ..+++..+.+...........+..++.++.+. ....+.+.+...
T Consensus 121 MdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 198 (471)
T d1wyub1 121 MDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRE 198 (471)
T ss_dssp CSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHH
T ss_pred CCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeecccccc--cccccchhhhhh
Confidence 45455556677776655554432 1122 34555666665554444433377888887653 345677777765
Q ss_pred HHHHhhcCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhCCeEEEEeccccccccCCCCCCccchhhhhhccCcCCCC
Q 037587 180 YQQAQTLNLKVKGVLITNPSNPLGTAMTHQELNHLINFSKSKRIHIVSDEIYSGTVFDSPSSSFISIMEAVMDRNIDESD 259 (464)
Q Consensus 180 i~~~~~~~~~~~~vil~~P~NPtG~~~s~~~l~~i~~~~~~~~~~lI~Deay~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 259 (464)
.. .++.++++.+|++.-+.. +..+++.+++++.+..+++|-+-......-. +..+.
T Consensus 199 ~~------~~~a~v~v~~p~~~g~~e---~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~-----~p~~~---------- 254 (471)
T d1wyub1 199 LG------PHVAALMLTNPNTLGLFE---RRILEISRLCKEAGVQLYYDGANLNAIMGWA-----RPGDM---------- 254 (471)
T ss_dssp CS------TTEEEEEECSSCTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC-----CHHHH----------
T ss_pred hh------ccccceeeccCCCccccc---chhhhhHHHHHhccccccccccchhhhhhcc-----ccCcc----------
Confidence 43 378889999995554433 3466778888888877777755433212111 11111
Q ss_pred CCCCcEEEEcCCCcCCCC----CccEEEEEEecCHHHHHHHH-H---------------hcc----c-CCCChHHHHHHH
Q 037587 260 DLWSRIHIVYSLSKDFSM----PGFRVGMIYSNNERVVSAAT-K---------------MSS----F-GLVSSQTQYLLS 314 (464)
Q Consensus 260 ~~~~~vi~l~S~SK~~g~----~GlRiG~l~~~~~~~~~~~~-~---------------~~~----~-~~~s~~~q~~~~ 314 (464)
...+++...++.||. .|--+|++.+.++.+ +.+. + -+. . ++.+.+...++.
T Consensus 255 ---g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~-R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~ 330 (471)
T d1wyub1 255 ---GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA-PYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAW 330 (471)
T ss_dssp ---TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG-GGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHH
T ss_pred ---cccccccccccccccccccccccccceeehhhhh-ccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHH
Confidence 222334455555543 345578888754432 2211 0 000 0 111222222222
Q ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccEE--EEEecCcccccCChhHHHHHHHHHHHhcCeEE
Q 037587 315 RMLSDKKFTCNYMKENRKRLRKRKEMLVSGLKVAGIRCLKSNAGLF--CWVDMRHLLVSNTFEAEKELWKKIIFEVGLNI 392 (464)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~f--~~~~l~~~~~~~~~~~~~~l~~~ll~~~gI~v 392 (464)
..+.-. -.+-+++..+..-.+..++.+.|+..|+++... +.+| +.++++.... ..++.++|+ ++|+.-
T Consensus 331 vYlsll--G~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~-~~ff~EFvv~~~~~~~------~~~i~k~L~-~~G~~~ 400 (471)
T d1wyub1 331 AYIRTL--GLEGLKKAAALAVLNARYLKELLKEKGYRVPYD-GPSMHEFVAQPPEGFR------ALDLAKGLL-ELGFHP 400 (471)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSC-SSCCSCEEEBCSTTCC------HHHHHHHHH-HTTCCC
T ss_pred HHHHHh--CchhHHHHHHHHHHHHHHHHHHHhhcCceeccC-cceeeEEeecCCCCCC------HHHHHHHHH-HcCCCC
Confidence 222221 145677777888888899999998888876432 2222 2345553222 234677776 568853
Q ss_pred eCCCCCCCCCCCeEEEEeec-CCHHHHHHHHHHHHHHHHhhCc
Q 037587 393 SPGSSCHCNEPGWFRICFAN-ITEETLQVALQRIKVFAQSCNP 434 (464)
Q Consensus 393 ~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 434 (464)
+...|.....+.+-|+++- .++++++.++++|++++++.++
T Consensus 401 -~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~~ 442 (471)
T d1wyub1 401 -PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPKE 442 (471)
T ss_dssp -CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCHH
T ss_pred -CcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 3334443346678899876 6899999999999999987764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.66 E-value=2.6 Score=35.51 Aligned_cols=101 Identities=9% Similarity=0.122 Sum_probs=60.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
+...++||.|++..=..+...|.+.|..|++.+-.-.......+.. +.+.+..++. |.+.+++.+++..+.-
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-~~~~~~~Dv~-------~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-GAHPVVMDVA-------DPASVERGFAEALAHL 75 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-TCEEEECCTT-------CHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCeEEEEecC-------CHHHHHHHHHHHHHhc
Confidence 3345667777666666666778889988888754333333344444 6555444332 5677777777665544
Q ss_pred CceEEEEEeCCC-CCCCC--CCCHHHHHHHHHH
Q 037587 188 LKVKGVLITNPS-NPLGT--AMTHQELNHLINF 217 (464)
Q Consensus 188 ~~~~~vil~~P~-NPtG~--~~s~~~l~~i~~~ 217 (464)
.+++. +++|.. ++.+. -++.++++++++.
T Consensus 76 g~iDi-lVnnAG~~~~~~~~~~~~~~~~~~~~v 107 (242)
T d1ulsa_ 76 GRLDG-VVHYAGITRDNFHWKMPLEDWELVLRV 107 (242)
T ss_dssp SSCCE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCceE-EEECCcccccCchhhCcchhhhccccc
Confidence 56774 555542 22222 3677888888775
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=80.50 E-value=2.7 Score=35.38 Aligned_cols=104 Identities=10% Similarity=0.092 Sum_probs=63.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChhhhcccCCCcEEEEEecCCCCCcccCHHHHHHHHHHHhhcC
Q 037587 108 DPNKLVLTAGSTAANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRPGVEIVPIHCSSSNGFRITISALENAYQQAQTLN 187 (464)
Q Consensus 108 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 187 (464)
+...++||.|+...=..+...|++.|-.|++..-.-.......... |.++..+..|-. +.+.+++.++......
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dls-----~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-EAEAIAVVADVS-----DPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-CSSEEEEECCTT-----SHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCceEEEEecCC-----CHHHHHHHHHHHHHHh
Confidence 4456778777776667777888899998888754333333444555 777887877632 5677777777665554
Q ss_pred CceEEEEEeCCCCCCCC--CCCHHHHHHHHHH
Q 037587 188 LKVKGVLITNPSNPLGT--AMTHQELNHLINF 217 (464)
Q Consensus 188 ~~~~~vil~~P~NPtG~--~~s~~~l~~i~~~ 217 (464)
.++..++.+-..++.+. -++.+++.+..+.
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~ 109 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRV 109 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHH
T ss_pred CCccEeccccccccccchhhhhcccccccccc
Confidence 57775444322333332 3466666666554
|