Citrus Sinensis ID: 037591

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MEGDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLDIGASVIPPQMIQAENFQFPVGRNYTGNADQLAEFTRMFRGGASSSVNNNFPIQSQMNYPLAGGFTISGLNLNLGGATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTSSAYAADQSLTGYAAEINQANGAAGGSRYMSLEHCMDLDSYWPPY
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEcEEcccccccccccccEEEEcccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHccccccEEEEEcccccccccccccccHcccccEEEccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
megdkkeetlppgfrfhpsdeELITYYLVNKisdasftgraiadvdlnkcepwdlpgkakmgekeWYFFSlrdrkyptgvrtnratntgywkttgkdkeIFNSVTSELVGMKKTLVFyrgraprgektnWVMHEYRIHsksafrtskdeWVVCRVFqksagakkfptnqsravnpaynldigasvippqmiqaenfqfpvgrnytgnadQLAEFTRMfrggasssvnnnfpiqsqmnyplaggftisglnlnlggattqpvlrpmppppphpqamhqeevtcsmmtssayaadqsLTGYAAEINQangaaggsrymslehcmdldsywppy
Flexible Loop (DISEMBL)
megdkkeetlppgfrfhpsDEELITYYLVNKISDASFTGRAIADVDLNKCEpwdlpgkakmgekewyffslrdrkyptgvrtnratntgywkttgkdkeifnsvtselvgmkktlvfyrgraprgektnwvmHEYRIHSksafrtskdewVVCRVFQksagakkfptnqsravnPAYNLDIGASVIPPQMIQAENFQFPVGRNYTGNADQLAEFTRMFRGGASSSVNNNFPIQSQMNYPLAGGFTISGLNLNLGGATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTSSAYAADQSLTGYAAEINQANGAAGGSRYMSLEHCMDldsywppy
Low Complexity Region (SEG)
MEGDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLDIGASVIPPQMIQAENFQFPVGRNYTGNADQLAEFTRMFRGGASSSVNNNFPIQSQMNYPLAGGFTISGLNLNLGGATTQPVLRpmppppphpqamhqEEVTCSMMTSSAYAADQSLTGYAAEINQANGAAGGSRYMSLEHCMDLDSYWPPY
Disordered region (IsUnstruct)
********************EELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKF*****RAVNPAYNLDIGASVIPPQMIQAENFQFPVGRNYTGNADQLAEFTRMFRGG****VNNNFPIQSQMNYPLAGGFTISGLNLNLGG******************************************GYAAEI**********RYMSLEHCMDLDSY****
Disordered Region (DISOPRED)
***********PGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIH***********WVVCRVFQ*****************************************************************************************************************************************************************EHCMDLDSYWPPY
Disordered Region (DISEMBL)
*********LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLDIGASVIPPQMIQAENFQFPVGRNYTGNADQLAEFTRMFRGGASSSVNNNFPIQSQMNYPLAGGFTISGLNLNLGGATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTSSAYAADQSLTGYAAEINQANGAAGGSRYMSLEHCMDLDSYWPPY
Disordered Region (DISPRO)
********TLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSA*************************************************QLAEFTRMFRGGASSSVNNNFPIQSQMNYPLAGGFTISGLNLNLGGATTQPVLRPM****************************************************LEHCMDLDSYWPPY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLDIGASVIPPQMIQAENFQFPVGRNYTGNADQLAEFTRMFRGGASSSVNNNFPIQSQMNYPLAGGFTISGLNLNLGGATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTSSAYAADQSLTGYAAEINQANGAAGGSRYMSLEHCMDLDSYWPPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.462	0.408	0.738	6e-68
Q9FLJ2	336	NAC domain-containing pro	no	no	0.549	0.541	0.630	1e-65
Q9S851	334	Protein CUP-SHAPED COTYLE	no	no	0.483	0.479	0.658	2e-62
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.465	0.496	0.670	5e-61
Q5CD17	396	NAC domain-containing pro	no	no	0.489	0.409	0.576	3e-57
Q93VY3	297	NAC domain-containing pro	no	no	0.483	0.538	0.535	3e-49
D2SMN4	406	NAC transcription factor	N/A	no	0.540	0.440	0.475	7e-49
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.441	0.478	0.605	8e-49
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.444	0.431	0.597	9e-49
Q84TE6	324	NAC domain-containing pro	no	no	0.552	0.564	0.479	6e-48

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score =  258 bits (658), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 116/157 (73%), Positives = 135/157 (85%), Gaps = 4/157 (2%)

Query: 10  LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFF 69
           LPPGFRFHP+DEELIT+YL+ K+ D  F+ RAIA+VDLNKCEPW LPG+AKMGEKEWYFF
Sbjct: 17  LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFF 76

Query: 70  SLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTN 129
           SLRDRKYPTG+RTNRAT  GYWK TGKD+EIF+S T  LVGMKKTLVFY+GRAP+GEK+N
Sbjct: 77  SLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSN 136

Query: 130 WVMHEYRIHSKSAF----RTSKDEWVVCRVFQKSAGA 162
           WVMHEYR+  K ++    R+SKDEWV+ RVFQK+  A
Sbjct: 137 WVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLA 173

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 146/192 (76%), Gaps = 10/192 (5%)

Query: 3   GDKKEET---LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKA 59
           G +KEE    LPPGFRFHP+DEELIT+YL  K+ D SF+ +AI +VDLNK EPW+LP  A
Sbjct: 6   GFQKEEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMA 65

Query: 60  KMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYR 119
           KMGEKEWYFF +RDRKYPTG+RTNRAT  GYWK TGKDKEI+   +  LVGMKKTLVFYR
Sbjct: 66  KMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKS--LVGMKKTLVFYR 123

Query: 120 GRAPRGEKTNWVMHEYRIHSKSAF----RTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNP 175
           GRAP+G+KTNWVMHEYR+  K +     +T+K+EWV+CRVFQKSAG KK P +    +  
Sbjct: 124 GRAPKGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGGKKIPISSLIRIG- 182

Query: 176 AYNLDIGASVIP 187
           +   D   S++P
Sbjct: 183 SLGTDFNPSLLP 194

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 106/161 (65%), Positives = 129/161 (80%), Gaps = 1/161 (0%)

Query: 4   DKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGE 63
           ++ E  LPPGFRFHP+DEELIT+YL +KI     +G  I++VDLN+CEPW+LP  AKMGE
Sbjct: 16  ERNERGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWELPEMAKMGE 75

Query: 64  KEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAP 123
           +EWYF+SLRDRKYPTG+RTNRAT  GYWK TGKDKE+F+    +LVGMKKTLVFY+GRAP
Sbjct: 76  REWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAP 135

Query: 124 RGEKTNWVMHEYRIHSKSAFR-TSKDEWVVCRVFQKSAGAK 163
           RG KT WVMHEYR+ +  + R T K+EWV+CRVF K+   K
Sbjct: 136 RGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNKTGDRK 176

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score =  234 bits (598), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 130/158 (82%), Gaps = 4/158 (2%)

Query: 7   EETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEW 66
           E  +PPGFRFHP+DEELITYYL+ K+ D++F+  AI+ VDLNK EPW+LP KAKMGEKEW
Sbjct: 17  ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKEW 76

Query: 67  YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGE 126
           YFF+LRDRKYPTG+RTNRAT  GYWK TGKD+EI +S T  L+GMKKTLVFY+GRAP+GE
Sbjct: 77  YFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGE 136

Query: 127 KTNWVMHEYRIHSKSAFR----TSKDEWVVCRVFQKSA 160
           K+ WVMHEYR+  K ++     ++KDEWV+C+V  KS 
Sbjct: 137 KSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSG 174

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score =  222 bits (566), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/182 (57%), Positives = 125/182 (68%), Gaps = 20/182 (10%)

Query: 10  LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFF 69
           LPPGFRFHP+D E+I  YL+ K+ + SFT   I +VDLNKCEPWDLP KAKMGEKEWYFF
Sbjct: 19  LPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLPSKAKMGEKEWYFF 78

Query: 70  SLRDRKYPTGVRTNRATNTGYWKTTGKDKEIF--------------NSVTSELVGMKKTL 115
           S +D KYPTG+RTNRAT  GYWK TGKD+EIF              ++   +LVGMKKTL
Sbjct: 79  SHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTL 138

Query: 116 VFYRGRAPRGEKTNWVMHEYRIHSK------SAFRTSKDEWVVCRVFQKSAGAKKFPTNQ 169
           VFY GRAP+G KTNWVMHE+R+H+       +     KDEWVVC+VF K  G +     Q
Sbjct: 139 VFYMGRAPKGTKTNWVMHEFRLHANLHNHHPNLRLNPKDEWVVCKVFHKKQGDEAINNQQ 198

Query: 170 SR 171
            +
Sbjct: 199 QQ 200

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 119/170 (70%), Gaps = 10/170 (5%)

Query: 9   TLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYF 68
           +LPPGFRF+P+DEEL+  YL  K++   F+ + I D+DL K +PWDLP KA  GEKEWYF
Sbjct: 13  SLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFGEKEWYF 72

Query: 69  FSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKT 128
           FS RDRKYP G R NR   +GYWK TG DK I  +     VG+KK LVFY G+AP+G KT
Sbjct: 73  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--TADGRRVGIKKALVFYAGKAPKGTKT 130

Query: 129 NWVMHEYRI--HSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPA 176
           NW+MHEYR+  HS+S   +  D+WV+CR+++K++G+      Q +AV P 
Sbjct: 131 NWIMHEYRLIEHSRSHGSSKLDDWVLCRIYKKTSGS------QRQAVTPV 174

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  194 bits (493), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 123/200 (61%), Gaps = 21/200 (10%)

Query: 10  LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFF 69
           LPPGFRFHP+DEEL+ +YL  K + A      IA+VDL K +PW+LP KA  GE EWYFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 70  SLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTS---ELVGMKKTLVFYRGRAPRGE 126
           S RDRKYP G R NRA  +GYWK TG DK I  S T    E VG+KK LVFYRG+ PRG 
Sbjct: 95  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 127 KTNWVMHEYRIHSKSAFRTSK------------------DEWVVCRVFQKSAGAKKFPTN 168
           KTNW+MHEYR+   SA  T+                   D+WV+CR+++K++ A     +
Sbjct: 155 KTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTSKAAAAVGD 214

Query: 169 QSRAVNPAYNLDIGASVIPP 188
           + R++    +++   +  PP
Sbjct: 215 EQRSMECEDSVEDAVTAYPP 234

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score =  194 bits (493), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 112/152 (73%), Gaps = 6/152 (3%)

Query: 10  LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMG---EKEW 66
           +PPGFRFHP+DEEL+ YYL  KIS   F    I +VDLNK EPWDL  + K+G   + EW
Sbjct: 8   VPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIGSTPQNEW 67

Query: 67  YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGE 126
           YFFS +DRKYPTG RTNRAT++G+WK TG+DK I NS     +GM+KTLVFY+GRAP G+
Sbjct: 68  YFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKK--IGMRKTLVFYKGRAPHGQ 125

Query: 127 KTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQK 158
           KT+W+MHEYRI         +D WVVCRVF+K
Sbjct: 126 KTDWIMHEYRIEDTED-DPCEDGWVVCRVFKK 156

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  194 bits (493), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 112/154 (72%), Gaps = 7/154 (4%)

Query: 10  LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMG---EKEW 66
           +PPGFRFHP+DEEL+ YYL  KIS   F    I +VDLNK EPWDL  + K+G   + EW
Sbjct: 9   VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEW 68

Query: 67  YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGE 126
           YFFS +DRKYPTG RTNRAT+ G+WK TG+DK I NS     +GM+KTLVFY+GRAP G+
Sbjct: 69  YFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKK--IGMRKTLVFYKGRAPHGQ 126

Query: 127 KTNWVMHEYRIHSKSAFRT--SKDEWVVCRVFQK 158
           KT+W+MHEYR+      +   S+D WVVCRVF K
Sbjct: 127 KTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMK 160

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score =  191 bits (485), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 124/196 (63%), Gaps = 13/196 (6%)

Query: 7   EETLPPGFRFHPSDEELITYYLVNK-ISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKE 65
           E  LPPGFRFHP D+EL+  YL+ + + +       +  VDLNKCEPWD+P  A +G K+
Sbjct: 16  EAKLPPGFRFHPKDDELVCDYLMRRSLHNNHRPPLVLIQVDLNKCEPWDIPKMACVGGKD 75

Query: 66  WYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRG 125
           WYF+S RDRKY TG+RTNRAT TGYWK TGKD+ I      +LVGM+KTLVFY+GRAPRG
Sbjct: 76  WYFYSQRDRKYATGLRTNRATATGYWKATGKDRTILRK--GKLVGMRKTLVFYQGRAPRG 133

Query: 126 EKTNWVMHEYRIHS-----KSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLD 180
            KT+WVMHE+R+         +  + K++WV+CRVF K+        N     +     +
Sbjct: 134 RKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNTEGVICRDNMGSCFD-----E 188

Query: 181 IGASVIPPQMIQAENF 196
             ++ +PP M    NF
Sbjct: 189 TASASLPPLMDPYINF 204

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
225429822	325	PREDICTED: NAC domain-containing protein	0.975	0.993	0.750	1e-142
255574129	379	transcription factor, putative [Ricinus	0.972	0.849	0.779	1e-141
224121396	316	NAC domain protein, IPR003441 [Populus t	0.921	0.965	0.701	1e-131
356509990	339	PREDICTED: NAC domain-containing protein	0.984	0.961	0.671	1e-126
449442026	382	PREDICTED: uncharacterized protein LOC10	0.963	0.835	0.670	1e-122
356518298	338	PREDICTED: NAC domain-containing protein	0.978	0.958	0.649	1e-119
224115596	311	NAC domain protein, IPR003441 [Populus t	0.897	0.954	0.652	1e-118
356554497	429	PREDICTED: NAC domain-containing protein	0.987	0.762	0.636	1e-113
395395203	342	NAC domain-containing protein [Tamarix h	0.945	0.915	0.639	1e-112
357436597	362	NAC domain protein [Medicago truncatula]	0.960	0.878	0.592	1e-104

>gi|225429822|ref|XP_002280812.1| PREDICTED: NAC domain-containing protein 100 [Vitis vinifera] gi|296081784|emb|CBI20789.3| unnamed protein product [Vitis vinifera]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/333 (75%), Positives = 282/333 (84%), Gaps = 10/333 (3%)

Query: 1   MEGDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAK 60
           ME ++KEETLPPGFRFHP+DEELIT YL+NKISDA+FTGRAIADVDLNKCEPW+LPGKAK
Sbjct: 1   MEEERKEETLPPGFRFHPTDEELITCYLINKISDATFTGRAIADVDLNKCEPWELPGKAK 60

Query: 61  MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRG 120
           MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRG
Sbjct: 61  MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRG 120

Query: 121 RAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLD 180
           RAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSA  KK+P+NQSR +NP Y+LD
Sbjct: 121 RAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAAGKKYPSNQSRGMNP-YSLD 179

Query: 181 IGASVIPPQMIQAENFQFPVGRNYTGNADQLAEFTRMFRGGASSSVNNNFPIQSQMNYPL 240
           IG SV+PP M+QA++ QFP+GRNY  NA +LAE TR+ RGG++  +  N PIQSQ+NYPL
Sbjct: 180 IGPSVMPPPMLQADSSQFPMGRNYVSNA-ELAELTRVLRGGSTGGL--NLPIQSQLNYPL 236

Query: 241 AGG-FTISGLNLNLGGATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTSSAYAADQSLTGY 299
            GG FTISGLNLNLGG +TQPVLRP   P P         +T  M+TS +   DQ  TGY
Sbjct: 237 GGGCFTISGLNLNLGGTSTQPVLRPNSLPQPMQMNQQDHMMTSPMLTSGSIPTDQ--TGY 294

Query: 300 AAEINQANGAAGGSRYMSL-EHCMDLDSYWPPY 331
            AE+N  NG    SR+M++ +HC+DLD+YWPPY
Sbjct: 295 GAEVNNGNGH--NSRFMNMVDHCVDLDNYWPPY 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574129|ref|XP_002527980.1| transcription factor, putative [Ricinus communis] gi|223532606|gb|EEF34392.1| transcription factor, putative [Ricinus communis]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/336 (77%), Positives = 287/336 (85%), Gaps = 14/336 (4%)

Query: 1   MEGDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAK 60
           ME D K+ +LPPGFRFHP+DEELITYYL+NKISDA+FTGRAIADVDLNK EPWDLPGKAK
Sbjct: 53  MEEDAKDGSLPPGFRFHPTDEELITYYLINKISDANFTGRAIADVDLNKSEPWDLPGKAK 112

Query: 61  MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRG 120
           MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRG
Sbjct: 113 MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRG 172

Query: 121 RAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLD 180
           RAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKK+P NQSRAVNP Y+LD
Sbjct: 173 RAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKYPPNQSRAVNP-YSLD 231

Query: 181 IGASVIPPQMIQ-AENFQFPVGRNYTGNADQLAEFTRMFR-GGASSSVNNNFPIQSQMNY 238
           +G S IP QM+Q AEN+QFPVGRNY   A +LAE TR FR GG+S+SV  N P+QSQMNY
Sbjct: 232 MGPSSIPAQMMQAAENYQFPVGRNYMSQA-ELAELTRAFRAGGSSTSV--NLPLQSQMNY 288

Query: 239 PL---AGGFTISGLNLNLGGATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTSSAYAADQS 295
           P+   AG FTISGLNLNLGGA TQP+ RPM P P  P AM+Q++V  SMMTS+  +    
Sbjct: 289 PVGAGAGCFTISGLNLNLGGAATQPIFRPMQPNP--PPAMNQQDVASSMMTSNT-SFAAE 345

Query: 296 LTGYAAEINQANGAAGGSRYMSLEHCMDLDSYWPPY 331
             GY AE+N AN  A  SR+M +EHCMDLD+YWP Y
Sbjct: 346 AAGYGAEMNNAN--APSSRFMGVEHCMDLDNYWPSY 379

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121396|ref|XP_002330817.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222872619|gb|EEF09750.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/342 (70%), Positives = 267/342 (78%), Gaps = 37/342 (10%)

Query: 1   MEGDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAK 60
           MEGD K+ETLPPGFRFHP+DEELITYYL +KISDA F+ RAI DVDLNKCEPWDLPGKAK
Sbjct: 1   MEGDAKDETLPPGFRFHPTDEELITYYLQSKISDADFSCRAIGDVDLNKCEPWDLPGKAK 60

Query: 61  MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRG 120
           MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTS+LVGMKKTLVFYRG
Sbjct: 61  MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSQLVGMKKTLVFYRG 120

Query: 121 RAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLD 180
           RAPRGEKTNWVMHEYR HSK+AFR SKDEWVVCRVFQKSAG KK+P+NQSRA NP YNL+
Sbjct: 121 RAPRGEKTNWVMHEYRFHSKAAFRASKDEWVVCRVFQKSAGVKKYPSNQSRAANP-YNLE 179

Query: 181 IGASVIPPQMIQ-AENFQFPVGRNY-TGNADQLAEFTRMFRGGASSSVNNNFPIQSQMNY 238
           IG SVIP QM+Q AENFQ P+GRNY   NA+  AE TR+FR G S+ +  N P+QS +N 
Sbjct: 180 IGPSVIPSQMMQAAENFQLPIGRNYMMSNAELQAELTRVFRAGGSTGI--NLPMQSPLNN 237

Query: 239 PLA---------GGFTISGLNLNLGGATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTSSA 289
             +         G FTISGLNLNLGGA +QP+LRPM PP      M+Q            
Sbjct: 238 TYSVGGGGPGGGGCFTISGLNLNLGGAASQPMLRPMAPP-----VMNQ------------ 280

Query: 290 YAADQSLTGYAAEINQANGAAGGSRYMSLEHCMDLDSYWPPY 331
               Q    Y AE+N ANG A  +R+M +E CMDL++YWPPY
Sbjct: 281 ----QDAAAYGAEMNTANGHA--NRFMGMEQCMDLENYWPPY 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509990|ref|XP_003523724.1| PREDICTED: NAC domain-containing protein 100-like [Glycine max]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/344 (67%), Positives = 276/344 (80%), Gaps = 18/344 (5%)

Query: 1   MEGDK-KEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKA 59
           MEG + KE TLPPGFRFHP+DEEL+T YLVNKISD++FTGRAI DVDLNKCEPW+LPGKA
Sbjct: 1   MEGTRAKEGTLPPGFRFHPTDEELVTCYLVNKISDSNFTGRAITDVDLNKCEPWELPGKA 60

Query: 60  KMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYR 119
           KMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS TSEL+GMKKTLVFY+
Sbjct: 61  KMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSETSELIGMKKTLVFYK 120

Query: 120 GRAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKF-PTNQSRAVNPAYN 178
           GRAPRGEK+NWVMHEYRIHSKS++RT++DEWVVCRVF+KS GAKK+  +N +R VNP Y+
Sbjct: 121 GRAPRGEKSNWVMHEYRIHSKSSYRTNRDEWVVCRVFKKSGGAKKYHSSNHARTVNP-YS 179

Query: 179 LDIGASVIPPQMIQAEN--FQFPVGRNYTGNADQLAEFTRMFRGGASSSVNNNFPIQSQM 236
           L+IG S++PP M+Q  +    F  GRNY  N+ +LAE  R+ RGG S+S + N PIQSQ+
Sbjct: 180 LEIGPSIMPPPMMQLGDPSAHFLYGRNYM-NSAELAELARVLRGGGSTS-SVNLPIQSQL 237

Query: 237 NYPLA-----GGFTISGLNLNLGG---ATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTSS 288
           +YP +     GGF ISGLNLNLGG   ATTQP+LRPM P PP        +V  SMMT+S
Sbjct: 238 SYPTSSSAGGGGFIISGLNLNLGGGATATTQPILRPMQPSPPVHTMAQVLDVNSSMMTTS 297

Query: 289 AYAADQSLTGYAAEINQANGAAGGSRYMSLE-HCMDLDSYWPPY 331
           +  A+ ++ GY  E++  N  + G+RYM ++ HCMDLD+YWP Y
Sbjct: 298 SLGAENNV-GYGTEVSN-NMNSHGNRYMGMDHHCMDLDNYWPSY 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442026|ref|XP_004138783.1| PREDICTED: uncharacterized protein LOC101210422 [Cucumis sativus] gi|449499300|ref|XP_004160780.1| PREDICTED: uncharacterized protein LOC101229150 [Cucumis sativus]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/337 (67%), Positives = 264/337 (78%), Gaps = 18/337 (5%)

Query: 6   KEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKE 65
           K++TLPPGFRFHPSDEELIT+YL+NKISDA+FTGRAI DVDLNK EPW+LPGKAKMGEKE
Sbjct: 53  KDQTLPPGFRFHPSDEELITFYLLNKISDANFTGRAITDVDLNKFEPWELPGKAKMGEKE 112

Query: 66  WYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRG 125
           WYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS TSEL+GMKKTLVFY+GRAPRG
Sbjct: 113 WYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSNTSELIGMKKTLVFYKGRAPRG 172

Query: 126 EKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLDIGASV 185
           EKTNWVMHEYR+HSK+AFRT+KDEWVVCRVFQKS GAKK+P NQSRAVNP  NL+I +S+
Sbjct: 173 EKTNWVMHEYRLHSKTAFRTAKDEWVVCRVFQKSPGAKKYPPNQSRAVNPYVNLEIPSSL 232

Query: 186 IPPQMIQAEN---FQFPVGRNYTGNADQLAEFTRMFRGGASSSVNN------NFPIQSQM 236
           +PP ++Q  +    Q+  GRNY   + +LAE  R+ R G S   N       N  +Q Q 
Sbjct: 233 LPPPIMQLGDPSATQYGYGRNYI-TSTELAELNRVLRTGGSGGSNGGSTQGINLSMQPQF 291

Query: 237 NYPLAGG-FTISGLNLNLGGATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTSSAYAADQS 295
           NYP  GG FTISGLNLNLGG  +QPVLR +PPPP        +++  SMM S+       
Sbjct: 292 NYPNTGGCFTISGLNLNLGGGISQPVLRQVPPPPVATTMTIGQDIASSMMASTITPE--- 348

Query: 296 LTGYAAEINQANGAAGGS-RYMSLEHCMDLDSYWPPY 331
            T Y AEIN  N A+G S R+M+++HCMDL++YWP +
Sbjct: 349 -TAYGAEIN--NNASGHSNRFMNMDHCMDLENYWPTW 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518298|ref|XP_003527816.1| PREDICTED: NAC domain-containing protein 100-like [Glycine max]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/345 (64%), Positives = 267/345 (77%), Gaps = 21/345 (6%)

Query: 1   MEGDK-KEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKA 59
           MEG + KEETLPPGFRFHP+DEEL+T YLVNKISD++FTGRAI DVDLNKCEPW+LPGKA
Sbjct: 1   MEGTRAKEETLPPGFRFHPTDEELVTCYLVNKISDSNFTGRAITDVDLNKCEPWELPGKA 60

Query: 60  KMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYR 119
           KMGEKEWYFFSLRDRKYPTGVRTNRATN GYWKTTGKDKEIFNS TSEL+GMKKTLVFY+
Sbjct: 61  KMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFNSETSELIGMKKTLVFYK 120

Query: 120 GRAPRGEKTNWVMHEYRIHSKSAFRTSK-DEWVVCRVFQKSAGAKKFP-TNQSRAVNPAY 177
           GRAPRGEK+NWVMHEYRIHSKS++RT++ DEWVVCRVF+KS  AKK+P +N +RAVNP Y
Sbjct: 121 GRAPRGEKSNWVMHEYRIHSKSSYRTNRQDEWVVCRVFKKSGNAKKYPSSNHARAVNP-Y 179

Query: 178 NLDIGASVIPPQMIQAEN--FQFPVGRNYTGNADQLAEFTRMFRGGASSSVNNNFPIQSQ 235
           +L+I  +++PP M+Q  +    F  GRNY  N+ +LAE  R+ RGG S+S + N PIQS 
Sbjct: 180 SLEIEPNILPPLMMQLGDPGAHFLYGRNYM-NSAELAELARVLRGGGSTS-SVNLPIQSH 237

Query: 236 MNYPLA----GGFTIS----GLNLNLGGATTQPVLRPMPPPPPHPQAMHQE-EVTCSMMT 286
           ++YP +    GGFTIS     L      ATTQP+LRPM P P     M Q  +   SMMT
Sbjct: 238 LSYPTSSSTGGGFTISGLNLNLGGGGATATTQPILRPMQPSPAPVHTMAQVLDANSSMMT 297

Query: 287 SSAYAADQSLTGYAAEINQANGAAGGSRYMSLEHCMDLDSYWPPY 331
           +S+  A+    GY AE++  N    G+RYM ++HCMDLD+YWP Y
Sbjct: 298 TSSLGAEN--VGYGAEMSNLN--LHGNRYMGVDHCMDLDNYWPSY 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115596|ref|XP_002332095.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222874915|gb|EEF12046.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/345 (65%), Positives = 261/345 (75%), Gaps = 48/345 (13%)

Query: 1   MEGDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAK 60
           MEGD KEETLPPGFRFHP+DEELITYYL NKISDA F+ RAI DVDLNK           
Sbjct: 1   MEGDAKEETLPPGFRFHPTDEELITYYLQNKISDADFSCRAIGDVDLNK----------- 49

Query: 61  MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRG 120
                       DRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTS+LVGMKKTLVFYRG
Sbjct: 50  ------------DRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSQLVGMKKTLVFYRG 97

Query: 121 RAPRGEKTNWVMHEYRIHSKSAFRTSK-----DEWVVCRVFQKSAGAKKFPTNQSRAVNP 175
           RAPRGEKTNWVMHEYR+H+K+ FR SK     DEWVVCR+FQKSAGAKK+P+NQSRA NP
Sbjct: 98  RAPRGEKTNWVMHEYRVHAKAGFRASKMWIQQDEWVVCRIFQKSAGAKKYPSNQSRAGNP 157

Query: 176 AYNLDIGASVIPPQMIQ-AENFQFPVGRNY-TGNADQLAEFTRMFRGGASSSVNNNFPIQ 233
            YNL+IG SV+P QM+Q A+NFQ P+GRNY   NA+  AE  R+FR G S+ +  N P+Q
Sbjct: 158 LYNLEIGPSVMPSQMMQAADNFQLPIGRNYMMSNAELQAELARVFRAGGSTGI--NLPMQ 215

Query: 234 SQMN--YPLAGG----FTISGLNLNLGGATTQPVLRPMPPPPPHPQAMHQEEVTCSMMTS 287
           S +N  Y + GG    FT+SGLNLNLGGAT+QPVLRPMPPP      M+Q +VT SMMTS
Sbjct: 216 SPLNNSYSVGGGAGGCFTVSGLNLNLGGATSQPVLRPMPPP-----VMNQHDVTPSMMTS 270

Query: 288 -SAYAADQSLTGYAAEINQANGAAGGSRYMSLEHCMDLDSYWPPY 331
            S+YA +Q+   Y AE+N ANG +  +R+M ++ CMDL++YWP Y
Sbjct: 271 TSSYAVEQA--AYGAEMNNANGPS--NRFMGMQQCMDLENYWPAY 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554497|ref|XP_003545582.1| PREDICTED: NAC domain-containing protein 21/22-like [Glycine max]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/360 (63%), Positives = 273/360 (75%), Gaps = 33/360 (9%)

Query: 1   MEGD-KKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKA 59
           MEG+ +KEETLPPGFRFHP+DEELI+YYL NKISD++FTG+AIADVDLNKCEPW+LP KA
Sbjct: 74  MEGNHEKEETLPPGFRFHPTDEELISYYLTNKISDSNFTGKAIADVDLNKCEPWELPEKA 133

Query: 60  KMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYR 119
           KMG+KEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEI NS TSELVGMKKTLVFY+
Sbjct: 134 KMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSATSELVGMKKTLVFYK 193

Query: 120 GRAPRGEKTNWVMHEYRIHSK-SAFRTSKDEWVVCRVFQKSAGAKKFPTNQS-RAVN-PA 176
           GRAPRGEK+NWVMHEYRIHSK S+FRT+KDEWVVCRVF+KSAGAKKFP++   RA+N   
Sbjct: 194 GRAPRGEKSNWVMHEYRIHSKSSSFRTNKDEWVVCRVFRKSAGAKKFPSSSHIRALNLNP 253

Query: 177 YNLDIGASVIPPQMIQ-----AENFQFPVGRNYTGNADQLAEFTRMFRGGASSSV---NN 228
           ++L++G S++PP  +      A    F  GRNY  N  ++AE TR+ RGG  ++V   N 
Sbjct: 254 FSLEVGPSIMPPPPMMHLADPAAAAHFLYGRNYMMNPSEVAEVTRVLRGGGPTNVNVMNM 313

Query: 229 NFPIQ-SQMNYPLAG----GFTISGLNLNLGG--ATT-----QPVLR----PMPPPPPHP 272
           N P+Q S +N P+AG    GFTISGLNLNLGG  ATT     Q +LR    P  P P H 
Sbjct: 314 NLPMQYSHLNNPVAGGGGEGFTISGLNLNLGGTVATTTAQAQQSLLRPMMPPPQPSPAHT 373

Query: 273 QAMHQEEVTCSMMT-SSAYAADQSLTGYAAEINQANGAAGGSRYMSLEHCMDLDSYWPPY 331
            A    + + +M+T + A AAD    GY  E+  AN  + G+RYM ++HCMDLD+YWP Y
Sbjct: 374 IAQVHHDFSSNMVTPNIALAADN--VGYGGEVASAN--SHGNRYMGMDHCMDLDNYWPSY 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395395203|gb|AFN55276.1| NAC domain-containing protein [Tamarix hispida]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/344 (63%), Positives = 257/344 (74%), Gaps = 31/344 (9%)

Query: 6   KEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKE 65
           K+ETLPPGFRFHPSDEELITYYL+NKISDA+F+ RAI DVDLNKCEPWDLPGKAKMGEKE
Sbjct: 12  KDETLPPGFRFHPSDEELITYYLLNKISDAAFSCRAIGDVDLNKCEPWDLPGKAKMGEKE 71

Query: 66  WYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTS-----ELVGMKKTLVFYRG 120
           WYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS TS     E++GMKKTLVFY+G
Sbjct: 72  WYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSNTSEMIGIEMIGMKKTLVFYKG 131

Query: 121 RAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLD 180
           RAPRGEK+NWVMHEYR+HSKSA+R +KDEWVVCRVFQKSAGAKK+PT+QSRA+N A NLD
Sbjct: 132 RAPRGEKSNWVMHEYRVHSKSAYRAAKDEWVVCRVFQKSAGAKKYPTSQSRAINGAINLD 191

Query: 181 I-GASVIPPQMIQAENFQFPV--GRNYTGNADQLAEFTR-MFRGGASSSVNNNFP-IQSQ 235
           + G +++P  M+Q +  Q+P    RNY  N  +LAE +R ++R     S + N   IQ Q
Sbjct: 192 MAGPNLLPQPMMQLDPSQYPNFGARNYMSNV-ELAELSRAVYRTSTHGSTSTNLHNIQPQ 250

Query: 236 MNYPLAG-GFTISGLNLNLGG--ATTQP-VLRPMPPPPPHPQAM---HQEEVTCSMMTSS 288
            N+P+ G  FTIS LNLNL G  A  QP V+RPMPPPP   Q      Q+++T S+M  S
Sbjct: 251 FNFPIGGQCFTISDLNLNLSGTHAAAQPTVMRPMPPPPTATQVAAINQQQDMTSSIMPIS 310

Query: 289 AYAADQSLTGYAA-EINQANGAAGGSRYMSLEHCMDLDSYWPPY 331
               D    GY A ++N ANGA  G         ++ D YWP Y
Sbjct: 311 TIGLDN---GYGALDMNNANGANYG---------VEFDYYWPTY 342

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436597|ref|XP_003588574.1| NAC domain protein [Medicago truncatula] gi|355477622|gb|AES58825.1| NAC domain protein [Medicago truncatula]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/356 (59%), Positives = 251/356 (70%), Gaps = 38/356 (10%)

Query: 1   MEGDK-KEETLPPGFRFHPSDEELITYYLVNKISDA-SFTGRAIADVDLNKCEPWDLPGK 58
           MEG++ KEETLPPGFRFHP+DEELITYYLVNKISD+ +FT +AI DVDLNKCEPW+LPGK
Sbjct: 17  MEGNREKEETLPPGFRFHPTDEELITYYLVNKISDSVNFTCKAIGDVDLNKCEPWELPGK 76

Query: 59  AKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFY 118
           AKMG KEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFY
Sbjct: 77  AKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFY 136

Query: 119 RGRAPRGEKTNWVMHEYRIHSKSAFRTSK-DEWVVCRVFQKSAGAKKFP---TNQSRAVN 174
           +GRAPRGEKTNWVMHEYRIHSKS+ RT+K DEWVV RVF+KSAGAKK+P   +N +RAV 
Sbjct: 137 KGRAPRGEKTNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSSSNLTRAVM 196

Query: 175 PAYNLDIGA-------SVIPPQMIQ------AENFQFPVGRNYTGNADQLAEFTRMFRGG 221
             YN+++         ++ PP M+Q      A +FQ   GRNY    + L     M + G
Sbjct: 197 NPYNINLEVGPPSFNNNMTPPTMMQHLGLDSATHFQL-YGRNYINTGEVLRAGVPMHQYG 255

Query: 222 ASSSVNNNFPIQSQMNYPLAG-GFTISGLNLNLGGAT-TQPVLRPMPPPPPHPQAMHQEE 279
           +  S +           PL G GFTISGLNLNLGG+T +Q +LRPMP       A     
Sbjct: 256 SHLSSS-----------PLGGEGFTISGLNLNLGGSTSSQTILRPMPSTTHTMAADFNSN 304

Query: 280 VTCSMMTSSAYAADQSLTGYAAEINQANGA--AGGSRYM---SLEHCMDLDSYWPP 330
           +     +++  AA+ +        +Q N A    G+RY    +++HC+DLD YWPP
Sbjct: 305 MMTGANSNTLVAAENNNNLGFGGGDQVNNANPNHGNRYNMQGTMDHCVDLDHYWPP 360

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2061082	316	NAC038 "NAC domain containing	0.758	0.794	0.623	7.1e-90
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.510	0.538	0.720	3.5e-68
TAIR|locus:2154684	375	CUC2 "CUP-SHAPED COTYLEDON 2"	0.468	0.413	0.726	9.7e-64
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.549	0.541	0.640	3.3e-63
TAIR|locus:2011736	334	CUC3 "CUP SHAPED COTYLEDON3" [	0.483	0.479	0.658	4.8e-62
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.540	0.544	0.634	1e-61
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.706	0.821	0.526	8.1e-60
TAIR|locus:2095958	338	NAC046 "NAC domain containing	0.700	0.686	0.522	1.7e-59
TAIR|locus:2083656	310	CUC1 "CUP-SHAPED COTYLEDON1" [	0.543	0.580	0.587	3.2e-58
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.471	0.465	0.664	4.6e-57

TAIR|locus:2061082 NAC038 "NAC domain containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
 Identities = 169/271 (62%), Positives = 202/271 (74%)

Query:     5 KKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEK 64
             K+EE LPPGFRFHP+DEELI+YYLVNKI+D +FTG+AIADVDLNK EPW+LP KAKMG K
Sbjct:    11 KEEEALPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDLNKSEPWELPEKAKMGGK 70

Query:    65 EWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPR 124
             EWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS TSELVGMKKTLVFYRGRAPR
Sbjct:    71 EWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKTLVFYRGRAPR 130

Query:   125 GEKTNWVMHEYRIHSKSAFRTSK-DEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNLDIGA 183
             GEKT WVMHEYR+HSKS++RTSK DEWVVCRVF+K+   KK+ +  S + +  +N    A
Sbjct:   131 GEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKKYISTSSSSTSHHHNNHTRA 190

Query:   184 SVIPPQM----IQAENFQFP----------VGRNYTGNADQLAEFTRMFRGGASSSVNNN 229
             S++          ++  Q P          + ++   NA  LAE +R+FR   S++++++
Sbjct:   191 SILSTNNNNPNYSSDLLQLPPHLQPHPSLNINQSLMANAVHLAELSRVFRASTSTTMDSS 250

Query:   230 FPIQSQMNYPLAGGFTISGLNLNLGGATTQP 260
                Q  MNY       +SGLNLNLGGA  QP
Sbjct:   251 H--QQLMNYT---HMPVSGLNLNLGGALVQP 276

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 124/172 (72%), Positives = 142/172 (82%)

Query:     7 EETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEW 66
             EE LPPGFRFHP+DEELIT+YL  K+SD  FTG+A+ DVDLNKCEPWDLP KA MGEKEW
Sbjct:     2 EENLPPGFRFHPTDEELITHYLCRKVSDIGFTGKAVVDVDLNKCEPWDLPAKASMGEKEW 61

Query:    67 YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGE 126
             YFFS RDRKYPTG+RTNRAT  GYWKTTGKDKEI+ S    LVGMKKTLVFY+GRAP+GE
Sbjct:    62 YFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYRS--GVLVGMKKTLVFYKGRAPKGE 119

Query:   127 KTNWVMHEYRIHSKSAFR-TSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAY 177
             K+NWVMHEYR+ SK  F  T+K+EWVVCRVF+KS  AKK    Q ++  P++
Sbjct:   120 KSNWVMHEYRLESKQPFNPTNKEEWVVCRVFEKSTAAKKAQEQQPQSSQPSF 171

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2154684 CUC2 "CUP-SHAPED COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 117/161 (72%), Positives = 137/161 (85%)

Query:     3 GDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMG 62
             GD   + LPPGFRFHP+DEELIT+YL+ K+ D  F+ RAIA+VDLNKCEPW LPG+AKMG
Sbjct:    12 GDS--QYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMG 69

Query:    63 EKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRA 122
             EKEWYFFSLRDRKYPTG+RTNRAT  GYWK TGKD+EIF+S T  LVGMKKTLVFY+GRA
Sbjct:    70 EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRA 129

Query:   123 PRGEKTNWVMHEYRIHSKSAF----RTSKDEWVVCRVFQKS 159
             P+GEK+NWVMHEYR+  K ++    R+SKDEWV+ RVFQK+
Sbjct:   130 PKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKT 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IMP

GO:0048504 "regulation of timing of organ formation" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 123/192 (64%), Positives = 146/192 (76%)

Query:     3 GDKKEET---LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKA 59
             G +KEE    LPPGFRFHP+DEELIT+YL  K+ D SF+ +AI +VDLNK EPW+LP  A
Sbjct:     6 GFQKEEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMA 65

Query:    60 KMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYR 119
             KMGEKEWYFF +RDRKYPTG+RTNRAT  GYWK TGKDKEI+      LVGMKKTLVFYR
Sbjct:    66 KMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRG--KSLVGMKKTLVFYR 123

Query:   120 GRAPRGEKTNWVMHEYRIHSK-SAF---RTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNP 175
             GRAP+G+KTNWVMHEYR+  K SA    +T+K+EWV+CRVFQKSAG KK P +    +  
Sbjct:   124 GRAPKGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGGKKIPISSLIRIG- 182

Query:   176 AYNLDIGASVIP 187
             +   D   S++P
Sbjct:   183 SLGTDFNPSLLP 194

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011736 CUC3 "CUP SHAPED COTYLEDON3" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 106/161 (65%), Positives = 129/161 (80%)

Query:     4 DKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGE 63
             ++ E  LPPGFRFHP+DEELIT+YL +KI     +G  I++VDLN+CEPW+LP  AKMGE
Sbjct:    16 ERNERGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWELPEMAKMGE 75

Query:    64 KEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAP 123
             +EWYF+SLRDRKYPTG+RTNRAT  GYWK TGKDKE+F+    +LVGMKKTLVFY+GRAP
Sbjct:    76 REWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAP 135

Query:   124 RGEKTNWVMHEYRIHSKSAFR-TSKDEWVVCRVFQKSAGAK 163
             RG KT WVMHEYR+ +  + R T K+EWV+CRVF K+   K
Sbjct:   136 RGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNKTGDRK 176

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010014 "meristem initiation" evidence=IGI;RCA;TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 120/189 (63%), Positives = 145/189 (76%)

Query:     4 DKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGE 63
             D ++  LPPGFRFHP+DEELIT+YL  K+ D  F+ +AI +VDLNK EPW+LP KAK+GE
Sbjct:    11 DDEQMDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEPWELPYKAKIGE 70

Query:    64 KEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAP 123
             KEWYFF +RDRKYPTG+RTNRAT  GYWK TGKDKEIF      LVGMKKTLVFYRGRAP
Sbjct:    71 KEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRG--KSLVGMKKTLVFYRGRAP 128

Query:   124 RGEKTNWVMHEYRIHSK-SAF---RTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPAYNL 179
             +G+KTNWVMHEYR+  K SA    +T+K+EWV+CRVF K+AG KK P +    +  +Y  
Sbjct:   129 KGQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVICRVFHKTAGGKKIPISTLIRIG-SYGT 187

Query:   180 DIGASVIPP 188
               G+S +PP
Sbjct:   188 --GSS-LPP 193

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 130/247 (52%), Positives = 160/247 (64%)

Query:     1 MEGDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAK 60
             M  D++   LPPGFRFHP+DEELIT+YL  K+ +  F+  AI +VDLNK EPWDLP KAK
Sbjct:    11 MVEDEEHIDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAK 70

Query:    61 MGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRG 120
             MGEKEWYFF +RDRKYPTG+RTNRAT  GYWK TGKDKEIF      LVGMKKTLVFY+G
Sbjct:    71 MGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKG--KSLVGMKKTLVFYKG 128

Query:   121 RAPRGEKTNWVMHEYRIHSKSAF----RTSKDEWVVCRVFQKSAGAKKFPTNQSRAVNPA 176
             RAP+G KTNWVMHEYR+  K       +T+K+EWV+CRVFQK A   K P +    ++P 
Sbjct:   129 RAPKGVKTNWVMHEYRLEGKYCIENLPQTAKNEWVICRVFQKRADGTKVPMSM---LDPH 185

Query:   177 YNLDIGASVIPPQMIQAENFQFPVGRNY-TGNADQLAEFTRMFRGGASS--SVNNNFPIQ 233
              N    A  +P  M  ++   F    ++ T  +DQ  E  R+         S+  + P+ 
Sbjct:   186 INRMEPAG-LPSLMDCSQRDSFTGSSSHVTCFSDQETEDKRLVHESKDGFGSLFYSDPLF 244

Query:   234 SQMNYPL 240
              Q NY L
Sbjct:   245 LQDNYSL 251

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2095958 NAC046 "NAC domain containing protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 128/245 (52%), Positives = 165/245 (67%)

Query:     3 GDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMG 62
             GD++   LPPGFRFHP+DEE+IT+YL  K+ +  FT  AI   DLNK EPWDLP  AKMG
Sbjct:    13 GDQEVVDLPPGFRFHPTDEEIITHYLKEKVFNIRFTAAAIGQADLNKNEPWDLPKIAKMG 72

Query:    63 EKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRA 122
             EKE+YFF  RDRKYPTG+RTNRAT +GYWK TGKDKEIF      LVGMKKTLVFY GRA
Sbjct:    73 EKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKGC-LVGMKKTLVFYTGRA 131

Query:   123 PRGEKTNWVMHEYRIHSKSAF----RTSKDEWVVCRVFQKSAGAKKFPTN-QSRAVNPAY 177
             P+GEKTNWVMHEYR+  K ++    +T++DEWVVCRVF K+A +    T  Q   ++   
Sbjct:   132 PKGEKTNWVMHEYRLDGKYSYHNLPKTARDEWVVCRVFHKNAPSTTITTTKQLSRIDSLD 191

Query:   178 NLD--IGASVIPPQMIQAENFQFPVGRNYTGNADQLAEFTRMFRGGASSSVNNNF-PIQS 234
             N+D  +  S +PP +I    F    G +++G A Q  +   +     ++ V+N + P Q+
Sbjct:   192 NIDHLLDFSSLPP-LIDP-GFLGQPGPSFSG-ARQQHDLKPVLHHPTTAPVDNTYLPTQA 248

Query:   235 QMNYP 239
              +N+P
Sbjct:   249 -LNFP 252

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2083656 CUC1 "CUP-SHAPED COTYLEDON1" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 111/189 (58%), Positives = 143/189 (75%)

Query:     7 EETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEW 66
             E  +PPGFRFHP+DEELITYYL+ K+ D++F+  AI+ VDLNK EPW+LP KAKMGEKEW
Sbjct:    17 ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKEW 76

Query:    67 YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGE 126
             YFF+LRDRKYPTG+RTNRAT  GYWK TGKD+EI +S T  L+GMKKTLVFY+GRAP+GE
Sbjct:    77 YFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGE 136

Query:   127 KTNWVMHEYRIHSKSAFR----TSKDEWVVCRVFQKSAGAKK----FPTNQSRAVNPAYN 178
             K+ WVMHEYR+  K ++     ++KDEWV+C+V  KS    +      ++ S AV   ++
Sbjct:   137 KSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSGVVSRETNLISSSSSSAVTGEFS 196

Query:   179 LDIGASVIP 187
                G+++ P
Sbjct:   197 -SAGSAIAP 204

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048467 "gynoecium development" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI;IMP

GO:0010014 "meristem initiation" evidence=IGI;IMP

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 107/161 (66%), Positives = 129/161 (80%)

Query:     3 GDKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMG 62
             G ++   LPPGFRFHP+DEE+IT YL  K+ ++ FT  A+ + DLNKCEPWDLP +AKMG
Sbjct:    14 GGEELVDLPPGFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEPWDLPKRAKMG 73

Query:    63 EKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRA 122
             EKE+YFF  RDRKYPTG+RTNRAT +GYWK TGKDKEIF      LVGMKKTLVFYRGRA
Sbjct:    74 EKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGC-LVGMKKTLVFYRGRA 132

Query:   123 PRGEKTNWVMHEYRIHSKSAF----RTSKDEWVVCRVFQKS 159
             P+GEKTNWVMHEYR+  K ++    ++++DEWVVCRVF K+
Sbjct:   133 PKGEKTNWVMHEYRLEGKYSYYNLPKSARDEWVVCRVFHKN 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032355001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (325 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	3e-79

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  237 bits (607), Expect = 3e-79
 Identities = 86/130 (66%), Positives = 100/130 (76%), Gaps = 3/130 (2%)

Query: 10  LPPGFRFHPSDEELITYYLVNKISDASFT-GRAIADVDLNKCEPWDLPG-KAKMGEKEWY 67
           LPPGFRFHP+DEEL+ YYL  K+          I +VD+ K EPWDLP  KAK G++EWY
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 68  FFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEK 127
           FFS RDRKYP G RTNRAT +GYWK TGKDK +  S   E+VGMKKTLVFY+GRAP+GEK
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVL-SKGGEVVGMKKTLVFYKGRAPKGEK 119

Query: 128 TNWVMHEYRI 137
           T+WVMHEYR+
Sbjct: 120 TDWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=6.2e-44  Score=301.98  Aligned_cols=128  Identities=55%  Similarity=1.070  Sum_probs=97.5

Q ss_pred             CCCcceECCCHHHHHHHHHHHhhcCCCCCc-cceeccCCCCCCCCCCCCcccCCCeeEEEEeecCCcCCCCCccccccCC
Q 037591           10 LPPGFRFHPSDEELITYYLVNKISDASFTG-RAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNT   88 (331)
Q Consensus        10 LPpGfRF~PTDEELI~~YL~~Ki~g~p~~~-~~I~dvDly~~ePWdLP~~~~~ge~eWYFFs~r~rk~~~G~R~nRat~~   88 (331)
                      |||||||+|||+|||.+||++|+.|.+++. .+|+++|||++|||+||.....++++||||+++++++.+|.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999998766 7899999999999999954445678999999999999999999999999


Q ss_pred             CceeecCCCeeEEeCCCCeEEeEEEEEEEeecCCCCCCccCeEEEEEEeC
Q 037591           89 GYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIH  138 (331)
Q Consensus        89 GyWKatGk~k~I~~~~~g~vIG~KKtLvFY~gr~pkg~KT~WvMhEY~L~  138 (331)
                      |+||.+|+.+.|.+. ++.+||+||+|+||.++.+++.||+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999975 7899999999999999889999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		9e-47
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		9e-47
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		8e-42

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  184 bits (466), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
Query: 9   TLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYF 68
           +LPPGFRF+P+DEEL+  YL  K +   F+ + IA++DL K +PW LP KA  GEKEWYF
Sbjct: 19  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 78
Query: 69  FSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKT 128
           FS RDRKYP G R NR   +GYWK TG DK I  S   + VG+KK LVFY G+AP+G KT
Sbjct: 79  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKGTKT 136
Query: 129 NWVMHEYRI--HSKSAFRTSKDEWVVCRVFQKSAGAKK 164
           NW+MHEYR+   S+    T  D+WV+CR+++K + A+K
Sbjct: 137 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  183 bits (465), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
Query: 9   TLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYF 68
           +LPPGFRF+P+DEEL+  YL  K +   F+ + IA++DL K +PW LP KA  GEKEWYF
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 75
Query: 69  FSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKT 128
           FS RDRKYP G R NR   +GYWK TG DK I  S   + VG+KK LVFY G+AP+G KT
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKGTKT 133
Query: 129 NWVMHEYRI--HSKSAFRTSKDEWVVCRVFQKSAGAKK 164
           NW+MHEYR+   S+    T  D+WV+CR+++K + A+K
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 101/160 (63%), Gaps = 9/160 (5%)
Query: 7   EETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEW 66
           E  LPPGFRFHP+D+EL+ +YL  K +        IA+VDL K +PWDLP +A  G +EW
Sbjct: 12  ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREW 71
Query: 67  YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGE 126
           YFF+ RDRKYP G R NRA   GYWK TG DK +  +     +G+KK LVFY G+APRG 
Sbjct: 72  YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKALVFYAGKAPRGV 129
Query: 127 KTNWVMHEYRIHSKSAFRTSK-------DEWVVCRVFQKS 159
           KT+W+MHEYR+                 D+WV+CR++ K 
Sbjct: 130 KTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
1ut7_A	171	No apical meristem protein; transcription regulati	1e-105
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-102

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  303 bits (777), Expect = e-105
 Identities = 86/160 (53%), Positives = 111/160 (69%), Gaps = 4/160 (2%)

Query: 7   EETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEW 66
           + +LPPGFRF+P+DEEL+  YL  K +   F+ + IA++DL K +PW LP KA  GEKEW
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEW 73

Query: 67  YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGE 126
           YFFS RDRKYP G R NR   +GYWK TG DK I      + VG+KK LVFY G+AP+G 
Sbjct: 74  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGT 131

Query: 127 KTNWVMHEYRIHSKSAFRTS--KDEWVVCRVFQKSAGAKK 164
           KTNW+MHEYR+   S    S   D+WV+CR+++K + A+K
Sbjct: 132 KTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  297 bits (762), Expect = e-102
 Identities = 82/172 (47%), Positives = 105/172 (61%), Gaps = 10/172 (5%)

Query: 1   MEGDKKEET-LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKA 59
            E D + E  LPPGFRFHP+D+EL+ +YL  K +        IA+VDL K +PWDLP +A
Sbjct: 5   RERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERA 64

Query: 60  KMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYR 119
             G +EWYFF+ RDRKYP G R NRA   GYWK TG DK +        +G+KK LVFY 
Sbjct: 65  LFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYA 122

Query: 120 GRAPRGEKTNWVMHEYRIHSKSAFRTSK-------DEWVVCRVFQKSAGAKK 164
           G+APRG KT+W+MHEYR+                 D+WV+CR++ K    +K
Sbjct: 123 GKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.1e-57  Score=406.55  Aligned_cols=156  Identities=51%  Similarity=1.017  Sum_probs=137.1

Q ss_pred             CCCCCCCCCcceECCCHHHHHHHHHHHhhcCCCCCccceeccCCCCCCCCCCCCcccCCCeeEEEEeecCCcCCCCCccc
Q 037591            4 DKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTN   83 (331)
Q Consensus         4 ~~~~~~LPpGfRF~PTDEELI~~YL~~Ki~g~p~~~~~I~dvDly~~ePWdLP~~~~~ge~eWYFFs~r~rk~~~G~R~n   83 (331)
                      .+.+..|||||||||||||||.|||++|+.|.+++..+|.++|||++|||+||+.+..++++||||+++++||++|.|++
T Consensus         9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n   88 (174)
T 3ulx_A            9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN   88 (174)
T ss_dssp             CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred             cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence            45678999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             cccCCCceeecCCCeeEEeCCCCeEEeEEEEEEEeecCCCCCCccCeEEEEEEeCCCCCcC-------CCCCcEEEEEEE
Q 037591           84 RATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFR-------TSKDEWVVCRVF  156 (331)
Q Consensus        84 Rat~~GyWKatGk~k~I~~~~~g~vIG~KKtLvFY~gr~pkg~KT~WvMhEY~L~~~~~~~-------~~~~e~VLCRVf  156 (331)
                      |+|++||||+||+++.|..  .|.+||+||+|+||.|++|++.||+|+||||+|.......       ...++|||||||
T Consensus        89 R~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf  166 (174)
T 3ulx_A           89 RAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY  166 (174)
T ss_dssp             EEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEE
T ss_pred             eecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEE
Confidence            9999999999999999976  4799999999999999999999999999999998753211       124899999999


Q ss_pred             EcCCC
Q 037591          157 QKSAG  161 (331)
Q Consensus       157 ~K~~~  161 (331)
                      +|++.
T Consensus       167 ~K~~~  171 (174)
T 3ulx_A          167 NKKNE  171 (174)
T ss_dssp             ESCC-
T ss_pred             EcCCC
Confidence            99864

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=9.3e-57  Score=399.63  Aligned_cols=157  Identities=54%  Similarity=1.025  Sum_probs=133.3

Q ss_pred             CCCCCCCCcceECCCHHHHHHHHHHHhhcCCCCCccceeccCCCCCCCCCCCCcccCCCeeEEEEeecCCcCCCCCcccc
Q 037591            5 KKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNR   84 (331)
Q Consensus         5 ~~~~~LPpGfRF~PTDEELI~~YL~~Ki~g~p~~~~~I~dvDly~~ePWdLP~~~~~ge~eWYFFs~r~rk~~~G~R~nR   84 (331)
                      ..+..|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++++||||+++++||++|.|++|
T Consensus        12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R   91 (171)
T 1ut7_A           12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR   91 (171)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred             ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence            34578999999999999999999999999999999999999999999999999988899999999999999999999999


Q ss_pred             ccCCCceeecCCCeeEEeCCCCeEEeEEEEEEEeecCCCCCCccCeEEEEEEeCCCCCcC--CCCCcEEEEEEEEcCCCC
Q 037591           85 ATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFR--TSKDEWVVCRVFQKSAGA  162 (331)
Q Consensus        85 at~~GyWKatGk~k~I~~~~~g~vIG~KKtLvFY~gr~pkg~KT~WvMhEY~L~~~~~~~--~~~~e~VLCRVf~K~~~~  162 (331)
                      +|++||||+||+++.|..  .+.+||+||+|+||+|++|++.||+|+||||+|...+...  ...++|||||||+|+...
T Consensus        92 ~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~  169 (171)
T 1ut7_A           92 VAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA  169 (171)
T ss_dssp             EETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred             cCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence            999999999999999986  4699999999999999999999999999999998764211  234899999999998754


Q ss_pred             C
Q 037591          163 K  163 (331)
Q Consensus       163 k  163 (331)
                      +
T Consensus       170 ~  170 (171)
T 1ut7_A          170 Q  170 (171)
T ss_dssp             -
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-71

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  217 bits (555), Expect = 1e-71
 Identities = 85/151 (56%), Positives = 106/151 (70%), Gaps = 4/151 (2%)

Query: 10  LPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFF 69
           LPPGFRF+P+DEEL+  YL  K +   F+ + IA++DL K +PW LP KA  GEKEWYFF
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 76

Query: 70  SLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTN 129
           S RDRKYP G R NR   +GYWK TG DK I  S   + VG+KK LVFY G+AP+G KTN
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKGTKTN 134

Query: 130 WVMHEYRIHSKSAFRTS--KDEWVVCRVFQK 158
           W+MHEYR+   S    S   D+WV+CR+++K
Sbjct: 135 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-53  Score=372.99  Aligned_cols=153  Identities=55%  Similarity=1.040  Sum_probs=132.1

Q ss_pred             CCCCCCCCcceECCCHHHHHHHHHHHhhcCCCCCccceeccCCCCCCCCCCCCcccCCCeeEEEEeecCCcCCCCCcccc
Q 037591            5 KKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNR   84 (331)
Q Consensus         5 ~~~~~LPpGfRF~PTDEELI~~YL~~Ki~g~p~~~~~I~dvDly~~ePWdLP~~~~~ge~eWYFFs~r~rk~~~G~R~nR   84 (331)
                      ..+..|||||||+|||||||.|||++||.|.+++..+|+++|||++|||+||+....++++||||+++.+++++|.|.+|
T Consensus        12 ~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R   91 (166)
T d1ut7a_          12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR   91 (166)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred             cccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCcccc
Confidence            45689999999999999999999999999999999999999999999999999888889999999999999999999999


Q ss_pred             ccCCCceeecCCCeeEEeCCCCeEEeEEEEEEEeecCCCCCCccCeEEEEEEeCCCCCcC--CCCCcEEEEEEEEcC
Q 037591           85 ATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFR--TSKDEWVVCRVFQKS  159 (331)
Q Consensus        85 at~~GyWKatGk~k~I~~~~~g~vIG~KKtLvFY~gr~pkg~KT~WvMhEY~L~~~~~~~--~~~~e~VLCRVf~K~  159 (331)
                      ++++|+||++|+++.|.+  +|.+||+||+|+||+++++++.||+|+||||+|.+.....  ...++|||||||+|+
T Consensus        92 ~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          92 VAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             EETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             ccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            999999999999998875  6899999999999999999999999999999998764322  234789999999985