Citrus Sinensis ID: 037611

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRAAGGGKKKK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
iataqgktskrvhFERNVirevsgfapyekridvlpkvgkDKRALKLAKRKLCTYERakmkhgemSNVLCRMRaagggkkkk
Flexible Loop (DISEMBL)
iataqgktskrvhfernvirevsgfapyekridvlpkvgkdkralklAKRKLCtyerakmkhgemsnvlcrmraagggkkkk
Low Complexity Region (SEG)
IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDkralklakrklCTYERAKMKHGEMSNVLCRMRAAgggkkkk
Disordered region (IsUnstruct)
************HFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYER*************************
Disordered Region (DISOPRED)
************HFERNVIREVSGFAPYEKRIDVLP**G**KRALKLAKRKLCTYERA************************
Disordered Region (DISEMBL)
**********RVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMR*********
Disordered Region (DISPRO)
*******TSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRAA*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRAAGGGKKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q9M352	112	60S ribosomal protein L36	yes	no	0.902	0.660	0.689	6e-20
Q9LZ57	108	60S ribosomal protein L36	no	no	0.902	0.685	0.675	4e-19
O80929	113	60S ribosomal protein L36	no	no	0.902	0.654	0.675	5e-19
Q9LRB8	101	60S ribosomal protein L36	N/A	no	0.902	0.732	0.567	2e-13
Q4PM12	110	60S ribosomal protein L36	N/A	no	0.939	0.7	0.519	2e-12
P52866	106	60S ribosomal protein L36	N/A	no	0.780	0.603	0.575	3e-12
P49630	115	60S ribosomal protein L36	yes	no	0.756	0.539	0.580	4e-12
Q6DER2	105	60S ribosomal protein L36	yes	no	0.792	0.619	0.553	2e-11
Q66KU4	105	60S ribosomal protein L36	N/A	no	0.792	0.619	0.553	2e-11
Q98TF6	105	60S ribosomal protein L36	yes	no	0.792	0.619	0.553	2e-11

>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 61/74 (82%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKR  F RN+I+EV+G APYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 33  KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query: 65  MSNVLCRMRAAGGG 78
           MS+VL +MR+ GGG
Sbjct: 93  MSSVLRKMRSGGGG 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 60/74 (81%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKR  F RN+I+EV+G APYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 29  KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 88

Query: 65  MSNVLCRMRAAGGG 78
           MS+VL +MR+ G G
Sbjct: 89  MSSVLRKMRSGGAG 102

Arabidopsis thaliana (taxid: 3702)

>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 59/74 (79%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKR  F R +IREV+G APYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 33  KGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query: 65  MSNVLCRMRAAGGG 78
           MS+VL +MR+ GG 
Sbjct: 93  MSSVLRKMRSLGGA 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 54/74 (72%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +G  S+RV   R V+REV+G+APYE+R+  L KVGKDKRALK+ KRKL T+ R K K  E
Sbjct: 27  KGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREE 86

Query: 65  MSNVLCRMRAAGGG 78
           M+ VL +M+AA  G
Sbjct: 87  MAGVLRKMQAASKG 100

Enteromorpha compressa (taxid: 63659)

>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 50/77 (64%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +G  SK   F R++IREV GFAP+E+R   L KV KDKRALK  K++L T+ R K K  E
Sbjct: 30  KGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDE 89

Query: 65  MSNVLCRMRAAGGGKKK 81
           +SNVL   R A   K+K
Sbjct: 90  LSNVLVAQRKAAAHKEK 106

Ixodes scapularis (taxid: 6945)

>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 2/66 (3%)

Query: 5  QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
          +GKTSKR HF RN+IREV+GF PYEKRI  L KVGKDKRALK+ + K+   + +K +  E
Sbjct: 33 KGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVGHSQESKEE--E 90

Query: 65 MSNVLC 70
            +V C
Sbjct: 91 RGDVQC 96

Daucus carota (taxid: 4039)

>sp|P49630|RL36_DROME 60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%)

Query: 14  FERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMR 73
           F R+++REV G APYEKR   L KV KDKRALK  KR+L T+ RAK K  E+SN+L ++R
Sbjct: 49  FMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108

Query: 74  AA 75
            A
Sbjct: 109 KA 110

Drosophila melanogaster (taxid: 7227)

>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 47/65 (72%)

Query: 5  QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
          +G+ +K   F R++IREV GFAPYE+R   L KV KDKRALK  K+++ T+ RAK K  E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREE 89

Query: 65 MSNVL 69
          +SNVL
Sbjct: 90 LSNVL 94

Xenopus tropicalis (taxid: 8364)

>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 47/65 (72%)

Query: 5  QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
          +G+ +K   F R++IREV GFAPYE+R   L KV KDKRALK  K+++ T+ RAK K  E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREE 89

Query: 65 MSNVL 69
          +SNVL
Sbjct: 90 LSNVL 94

Xenopus laevis (taxid: 8355)

>sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 47/65 (72%)

Query: 5  QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
          +G+ +K   F R++IREV GFAPYE+R   L KV KDKRALK  K+++ T+ RAK K  E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query: 65 MSNVL 69
          +SNVL
Sbjct: 90 LSNVL 94

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
197312875	110	ribosomal protein L36 [Rheum australe]	0.951	0.709	0.756	3e-23
413968432	108	ribosomal protein L36 [Solanum tuberosum	0.951	0.722	0.743	6e-23
356574026	110	PREDICTED: 60S ribosomal protein L36-3 [	0.951	0.709	0.756	9e-23
356535863	110	PREDICTED: 60S ribosomal protein L36-3-l	0.951	0.709	0.756	9e-23
374096129	110	60S ribosomal protein L36 [Wolffia austr	0.951	0.709	0.769	9e-23
224116904	110	predicted protein [Populus trichocarpa]	0.951	0.709	0.756	1e-22
388518253	111	unknown [Medicago truncatula]	0.987	0.729	0.731	2e-22
388500776	110	unknown [Lotus japonicus]	0.951	0.709	0.743	3e-22
357443981	147	60S ribosomal protein L36 [Medicago trun	0.951	0.530	0.743	4e-22
357443979	111	60S ribosomal protein L36 [Medicago trun	0.951	0.702	0.759	4e-22

>gi|197312875|gb|ACH63218.1| ribosomal protein L36 [Rheum australe]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 68/78 (87%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKRVHF RN+IREV+GFAPYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 33  KGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 92

Query: 65  MSNVLCRMRAAGGGKKKK 82
           MSNVL +MR+AGG +KKK
Sbjct: 93  MSNVLRKMRSAGGAEKKK 110

Source: Rheum australe

Species: Rheum australe

Genus: Rheum

Family: Polygonaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413968432|gb|AFW90553.1| ribosomal protein L36 [Solanum tuberosum]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 68/78 (87%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKR+HF RN+IREV+GFAPYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 31  KGKTSKRIHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 90

Query: 65  MSNVLCRMRAAGGGKKKK 82
           MS+VL +MRA GGG+KKK
Sbjct: 91  MSSVLRKMRATGGGEKKK 108

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574026|ref|XP_003555154.1| PREDICTED: 60S ribosomal protein L36-3 [Glycine max]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 66/78 (84%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKRVHF RN+IREV+GFAPYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 33  KGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 92

Query: 65  MSNVLCRMRAAGGGKKKK 82
           MSNVL +MRA G G KKK
Sbjct: 93  MSNVLRKMRAGGAGDKKK 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535863|ref|XP_003536462.1| PREDICTED: 60S ribosomal protein L36-3-like [Glycine max]

 Score =  110 bits (275), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 66/78 (84%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKRVHF RN+IREV+GFAPYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 33  KGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 92

Query: 65  MSNVLCRMRAAGGGKKKK 82
           MSNVL +MRA G G KKK
Sbjct: 93  MSNVLRKMRAGGAGDKKK 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374096129|gb|AEY84977.1| 60S ribosomal protein L36 [Wolffia australiana]

 Score =  110 bits (275), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 67/78 (85%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKRVHF RNVIREV+GFAPYEKRI  L KVGKDKRALKLAKRKL T++RAK K  E
Sbjct: 33  KGKTSKRVHFVRNVIREVAGFAPYEKRITELLKVGKDKRALKLAKRKLGTHKRAKKKREE 92

Query: 65  MSNVLCRMRAAGGGKKKK 82
           M+NVL +MRAAG  +KKK
Sbjct: 93  MANVLRKMRAAGVSEKKK 110

Source: Wolffia australiana

Species: Wolffia australiana

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116904|ref|XP_002317423.1| predicted protein [Populus trichocarpa] gi|222860488|gb|EEE98035.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 68/78 (87%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKRV F R++IREV+GFAPYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 33  KGKTSKRVQFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query: 65  MSNVLCRMRAAGGGKKKK 82
           MSNVL +MRAAGGG+KKK
Sbjct: 93  MSNVLRKMRAAGGGEKKK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518253|gb|AFK47188.1| unknown [Medicago truncatula]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 69/82 (84%), Gaps = 1/82 (1%)

Query: 2   ATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMK 61
           ++ +GKTSKRVHF RN+IREV+GFAPYEKRI  L KVGKDKRALK+AKRKL T++RAK K
Sbjct: 30  SSRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 89

Query: 62  HGEMSNVLCRMRAAGG-GKKKK 82
             EMSNVL +MRA GG G KKK
Sbjct: 90  REEMSNVLRKMRAGGGAGDKKK 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500776|gb|AFK38454.1| unknown [Lotus japonicus]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 66/78 (84%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKRVHF R++IREV+GFAPYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 33  KGKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query: 65  MSNVLCRMRAAGGGKKKK 82
           MSNVL +MRA G G KKK
Sbjct: 93  MSNVLRKMRAGGAGDKKK 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443981|ref|XP_003592268.1| 60S ribosomal protein L36 [Medicago truncatula] gi|355481316|gb|AES62519.1| 60S ribosomal protein L36 [Medicago truncatula]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 65/78 (83%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKRVHF RN+IREV+GFAPYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 69  KGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 128

Query: 65  MSNVLCRMRAAGGGKKKK 82
           MSNVL +MRA GG   KK
Sbjct: 129 MSNVLRKMRAGGGAGDKK 146

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443979|ref|XP_003592267.1| 60S ribosomal protein L36 [Medicago truncatula] gi|355481315|gb|AES62518.1| 60S ribosomal protein L36 [Medicago truncatula] gi|388508142|gb|AFK42137.1| unknown [Medicago truncatula]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 67/79 (84%), Gaps = 1/79 (1%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
           +GKTSKRVHF RN+IREV+GFAPYEKRI  L KVGKDKRALK+AKRKL T++RAK K  E
Sbjct: 33  KGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 92

Query: 65  MSNVLCRMRAAGG-GKKKK 82
           MSNVL +MRA GG G KKK
Sbjct: 93  MSNVLRKMRAGGGAGDKKK 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2040756	113	AT2G37600 [Arabidopsis thalian	0.853	0.619	0.542	1.2e-12
TAIR|locus:2084395	112	AT3G53740 [Arabidopsis thalian	0.853	0.625	0.542	1.2e-12
TAIR|locus:2181758	108	AT5G02450 [Arabidopsis thalian	0.853	0.648	0.542	1.2e-12
UNIPROTKB|Q98TF6	105	RPL36 "60S ribosomal protein L	0.865	0.676	0.464	6.6e-10
UNIPROTKB|Q3T171	105	RPL36 "60S ribosomal protein L	0.865	0.676	0.464	6.6e-10
UNIPROTKB|Q9Y3U8	105	RPL36 "60S ribosomal protein L	0.865	0.676	0.464	6.6e-10
UNIPROTKB|F2Z5K6	105	RPL36 "Uncharacterized protein	0.865	0.676	0.464	6.6e-10
RGD|2320900	106	LOC100361060 "ribosomal protei	0.865	0.669	0.464	6.6e-10
RGD|2322117	105	LOC100360439 "ribosomal protei	0.865	0.676	0.464	6.6e-10
RGD|2319728	104	LOC100361644 "ribosomal protei	0.865	0.682	0.450	1.4e-09

TAIR|locus:2040756 AT2G37600 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 38/70 (54%), Positives = 46/70 (65%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +GKTSKR  F R +IREV+G APYEKRI  L KVGKD            T++RAK K  E
Sbjct:    33 KGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query:    65 MSNVLCRMRA 74
             MS+VL +MR+
Sbjct:    93 MSSVLRKMRS 102

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2084395 AT3G53740 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 38/70 (54%), Positives = 47/70 (67%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +GKTSKR  F RN+I+EV+G APYEKRI  L KVGKD            T++RAK K  E
Sbjct:    33 KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query:    65 MSNVLCRMRA 74
             MS+VL +MR+
Sbjct:    93 MSSVLRKMRS 102

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2181758 AT5G02450 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 38/70 (54%), Positives = 47/70 (67%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +GKTSKR  F RN+I+EV+G APYEKRI  L KVGKD            T++RAK K  E
Sbjct:    29 KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 88

Query:    65 MSNVLCRMRA 74
             MS+VL +MR+
Sbjct:    89 MSSVLRKMRS 98

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q98TF6 RPL36 "60S ribosomal protein L36" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/71 (46%), Positives = 41/71 (57%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +G+ +K   F R++IREV GFAPYE+R   L KV KD            T+ RAK K  E
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query:    65 MSNVLCRMRAA 75
             +SNVL  MR A
Sbjct:    90 LSNVLAAMRKA 100

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|Q3T171 RPL36 "60S ribosomal protein L36" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/71 (46%), Positives = 41/71 (57%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +G+ +K   F R++IREV GFAPYE+R   L KV KD            T+ RAK K  E
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query:    65 MSNVLCRMRAA 75
             +SNVL  MR A
Sbjct:    90 LSNVLAAMRKA 100

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9Y3U8 RPL36 "60S ribosomal protein L36" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/71 (46%), Positives = 41/71 (57%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +G+ +K   F R++IREV GFAPYE+R   L KV KD            T+ RAK K  E
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query:    65 MSNVLCRMRAA 75
             +SNVL  MR A
Sbjct:    90 LSNVLAAMRKA 100

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5K6 RPL36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/71 (46%), Positives = 41/71 (57%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +G+ +K   F R++IREV GFAPYE+R   L KV KD            T+ RAK K  E
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query:    65 MSNVLCRMRAA 75
             +SNVL  MR A
Sbjct:    90 LSNVLAAMRKA 100

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|2320900 LOC100361060 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/71 (46%), Positives = 41/71 (57%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +G+ +K   F R++IREV GFAPYE+R   L KV KD            T+ RAK K  E
Sbjct:    31 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 90

Query:    65 MSNVLCRMRAA 75
             +SNVL  MR A
Sbjct:    91 LSNVLAAMRKA 101

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2322117 LOC100360439 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/71 (46%), Positives = 41/71 (57%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +G+ +K   F R++IREV GFAPYE+R   L KV KD            T+ RAK K  E
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKKVGTHIRAKRKREE 89

Query:    65 MSNVLCRMRAA 75
             +SNVL  MR A
Sbjct:    90 LSNVLAAMRKA 100

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2319728 LOC100361644 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/71 (45%), Positives = 41/71 (57%)

Query:     5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
             +G+ +K   F R++IREV GFAPY++R   L KV KD            T+ RAK K  E
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYQRRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query:    65 MSNVLCRMRAA 75
             +SNVL  MR A
Sbjct:    90 LSNVLAAMRKA 100

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Q415	RL36_DANRE	No assigned EC number	0.5384	0.7926	0.6190	yes	no
Q3T171	RL36_BOVIN	No assigned EC number	0.5538	0.7926	0.6190	yes	no
Q9Y3U8	RL36_HUMAN	No assigned EC number	0.5538	0.7926	0.6190	yes	no
P39032	RL36_RAT	No assigned EC number	0.5384	0.7926	0.6190	yes	no
Q6DER2	RL36_XENTR	No assigned EC number	0.5538	0.7926	0.6190	yes	no
Q98TF6	RL36_CHICK	No assigned EC number	0.5538	0.7926	0.6190	yes	no
Q5RAZ9	RL36_PONAB	No assigned EC number	0.5538	0.7926	0.6190	yes	no
Q9M352	RL362_ARATH	No assigned EC number	0.6891	0.9024	0.6607	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XI0796	hypothetical protein (111 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	ABP1	auxin binding protein (152 aa)							•		0.702
	eugene3.00011799	RecName- Full=60S ribosomal protein L6; (232 aa)				•	•	•	•		0.606
	estExt_fgenesh4_pg.C_LG_IX0938	RecName- Full=60S ribosomal protein L6; (232 aa)				•	•	•	•		0.589
	eugene3.00002480	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•				0.508
	estExt_fgenesh4_pm.C_LG_XVII0043	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•				0.508
	estExt_Genewise1_v1.C_LG_XIII3119	SubName- Full=Putative uncharacterized protein; (131 aa)				•		•			0.495
	eugene3.00190574	SubName- Full=Putative uncharacterized protein; (132 aa)				•		•			0.495
	estExt_fgenesh4_pm.C_LG_IX0111	SubName- Full=Putative uncharacterized protein; (113 aa)				•	•	•			0.484
	estExt_fgenesh4_pg.C_LG_VII0552	SubName- Full=Putative uncharacterized protein; (146 aa)				•	•		•		0.479
	fgenesh4_pm.C_LG_III000548	RecName- Full=Ribosomal protein S27; (86 aa)				•		•			0.478

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
pfam01158	95	pfam01158, Ribosomal_L36e, Ribosomal protein L36e	6e-21
PTZ00196	98	PTZ00196, PTZ00196, 60S ribosomal protein L36; Pro	3e-15
COG5051	97	COG5051, RPL36A, Ribosomal protein L36E [Translati	5e-09

>gnl|CDD|201631 pfam01158, Ribosomal_L36e, Ribosomal protein L36e

 Score = 78.4 bits (194), Expect = 6e-21
 Identities = 45/70 (64%), Positives = 53/70 (75%)

Query: 6  GKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEM 65
          GK SKR  F R++IREV+GFAPYEKR+  L KVGKDKRALK AK++L T+ RAK K  E+
Sbjct: 26 GKLSKRTKFVRDIIREVAGFAPYEKRVIELLKVGKDKRALKFAKKRLGTHRRAKRKREEL 85

Query: 66 SNVLCRMRAA 75
          SNVL   R A
Sbjct: 86 SNVLAAQRKA 95

Length = 95

>gnl|CDD|185509 PTZ00196, PTZ00196, 60S ribosomal protein L36; Provisional

 Score = 63.9 bits (156), Expect = 3e-15
 Identities = 37/70 (52%), Positives = 47/70 (67%)

Query: 6  GKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEM 65
          G  SKR    ++VIREV GF+PYE+R+  L KVGKDKRALK AK++L T++RAK K  E+
Sbjct: 29 GLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKRAKAKRDEI 88

Query: 66 SNVLCRMRAA 75
             L   R  
Sbjct: 89 QEALRAQRKK 98

Length = 98

>gnl|CDD|227384 COG5051, RPL36A, Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

 Score = 48.0 bits (114), Expect = 5e-09
 Identities = 29/65 (44%), Positives = 49/65 (75%)

Query: 5  QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
          +G+ SKR  F R+++RE++G +PYE+R+  L +  +DKRA KLAK++L + +RAK K  E
Sbjct: 30 KGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAKAKVEE 89

Query: 65 MSNVL 69
          +++V+
Sbjct: 90 LTSVI 94

Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PF01158	98	Ribosomal_L36e: Ribosomal protein L36e; InterPro:	100.0
PTZ00196	98	60S ribosomal protein L36; Provisional	100.0
KOG3452	102	consensus 60S ribosomal protein L36 [Translation,	100.0
COG5051	97	RPL36A Ribosomal protein L36E [Translation, riboso	99.95

>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=6.1e-43  Score=235.88  Aligned_cols=74  Identities=59%  Similarity=0.798  Sum_probs=70.9

Q ss_pred             ccccCcCcchhHHHHHHHHHhhccchhhhhhhhhccccchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Q 037611            2 ATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRAA   75 (82)
Q Consensus         2 ~~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~ELlk~~kdKrALKf~KKrlGth~RAKrK~eel~~vl~~~Rk~   75 (82)
                      |+++|.+|+|++||||||+|||||||||+++||||++|+||+||||+|+|||||+|||+|+|||+|||++||++
T Consensus        25 s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~RAKrKrEel~~vl~~~rk~   98 (98)
T PF01158_consen   25 SRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIRAKRKREELSNVLAAMRKA   98 (98)
T ss_dssp             TTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.

>PTZ00196 60S ribosomal protein L36; Provisional

Probab=100.00  E-value=1.3e-42  Score=234.69  Aligned_cols=73  Identities=51%  Similarity=0.715  Sum_probs=71.9

Q ss_pred             ccccCcCcchhHHHHHHHHHhhccchhhhhhhhhccccchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037611            2 ATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRA   74 (82)
Q Consensus         2 ~~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~ELlk~~kdKrALKf~KKrlGth~RAKrK~eel~~vl~~~Rk   74 (82)
                      |+++|.+|+|++||||||+|||||||||+|+||||++|+||+||||+|+|||||+|||+|+|||++||++||+
T Consensus        25 s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~RaK~Kreel~~vl~~~rk   97 (98)
T PTZ00196         25 SKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKRAKAKRDEIQEALRAQRK   97 (98)
T ss_pred             ccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999997

>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.1e-41  Score=226.85  Aligned_cols=77  Identities=57%  Similarity=0.773  Sum_probs=74.5

Q ss_pred             CccccCcCcchhHHHHHHHHHhhccchhhhhhhhhccccchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc
Q 037611            1 IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRAAGG   77 (82)
Q Consensus         1 ~~~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~ELlk~~kdKrALKf~KKrlGth~RAKrK~eel~~vl~~~Rk~~a   77 (82)
                      .|+++|.+|+||+||+|||+|||||||||+++||||++|+||+|+||+|+|||||+|||+|+|||+|||++||++++
T Consensus        26 ~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~RAk~KrEELsnvl~~~rk~~~  102 (102)
T KOG3452|consen   26 QSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHKRAKRKREELSNVLAAMRKAHA  102 (102)
T ss_pred             cCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999764

>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=2.4e-28  Score=164.51  Aligned_cols=71  Identities=41%  Similarity=0.665  Sum_probs=68.7

Q ss_pred             CccccCcCcchhHHHHHHHHHhhccchhhhhhhhhccccchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037611            1 IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCR   71 (82)
Q Consensus         1 ~~~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~ELlk~~kdKrALKf~KKrlGth~RAKrK~eel~~vl~~   71 (82)
                      +|+++|.+|+|+.||+++++|++||+|||+++||||++|.|++|.|++|||||||+||+.|.|||.++|++
T Consensus        26 ps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRAkaKvEel~~~i~~   96 (97)
T COG5051          26 PSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAKAKVEELTSVIQS   96 (97)
T ss_pred             cchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence            47789999999999999999999999999999999999999999999999999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
3izr_k	112	Localization Of The Large Subunit Ribosomal Protein		7e-16
4a18_Q	104	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-06
3izs_k	100	Localization Of The Large Subunit Ribosomal Protein		1e-05

>pdb|3IZR|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 112

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 50/71 (70%)
Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKMKHGE 64
           +GK +KRVHF RN+IREV+GFAPYEKRI  L KVGKD            T++RAK K  E
Sbjct: 33  KGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 92
Query: 65  MSNVLCRMRAA 75
           MS+VL +MR+A
Sbjct: 93  MSSVLRKMRSA 103

>pdb|4A18|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 104

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 5  QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVG--KDXXXXXXXXXXXC-TYERAKMK 61
          +GK  KRV   R VIREV+GFAPYEKRI  L K G  KD             T+ RAK+K
Sbjct: 31 KGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVK 90

>pdb|3IZS|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 1  IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDXXXXXXXXXXXCTYERAKM 60
          I+  +G  S R  F R+++RE++G +PYE+R+  L +   +            ++ RAK 
Sbjct: 26 ISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKA 85
Query: 61 KHGEMSNVLCRMR 73
          K  EM+N++   R
Sbjct: 86 KVEEMNNIIAASR 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	1e-15
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	1e-14
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	2e-12

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q Length = 104

 Score = 56.5 bits (136), Expect = 2e-12
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 5   QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGK---DKRALKLAKRKLCTYERAKMK 61
           +GK  KRV   R VIREV+GFAPYEKRI  L K G     K+A K+A+++L T+ RAK+K
Sbjct: 31  KGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVK 90

Query: 62  HGEMSNVLCRMR 73
              +   +   R
Sbjct: 91  KALLEEAVRAQR 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	100.0
3izc_k	100	60S ribosomal protein RPL36 (L36E); eukaryotic rib	100.0
3iz5_k	112	60S ribosomal protein L36 (L36E); eukaryotic ribos	100.0

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q

Probab=100.00  E-value=4.8e-43  Score=237.90  Aligned_cols=73  Identities=47%  Similarity=0.665  Sum_probs=71.8

Q ss_pred             ccccCcCcchhHHHHHHHHHhhccchhhhhhhhhccccc---hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037611            2 ATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGK---DKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRA   74 (82)
Q Consensus         2 ~~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~ELlk~~k---dKrALKf~KKrlGth~RAKrK~eel~~vl~~~Rk   74 (82)
                      |+++|.+|||++||||||+|||||||||+|+||||++|+   |||||||+|+|||||+|||+|+|||+|||++||+
T Consensus        28 s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RAKrKreel~~vl~~~Rk  103 (104)
T 4a18_Q           28 VQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAVRAQRK  103 (104)
T ss_dssp             TTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence            678999999999999999999999999999999999999   9999999999999999999999999999999996

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00