Citrus Sinensis ID: 037612
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 663 | 2.2.26 [Sep-21-2011] | |||||||
| Q6BTZ4 | 560 | Vacuolar protein 8 OS=Deb | yes | no | 0.232 | 0.275 | 0.291 | 7e-07 | |
| Q59MN0 | 585 | Vacuolar protein 8 OS=Can | N/A | no | 0.232 | 0.263 | 0.285 | 3e-06 | |
| Q757R0 | 568 | Vacuolar protein 8 OS=Ash | yes | no | 0.241 | 0.281 | 0.280 | 7e-06 | |
| Q5EFZ4 | 556 | Vacuolar protein 8 OS=Kom | yes | no | 0.232 | 0.276 | 0.274 | 2e-05 | |
| P39968 | 578 | Vacuolar protein 8 OS=Sac | yes | no | 0.241 | 0.276 | 0.269 | 0.0002 | |
| Q6FJV1 | 582 | Vacuolar protein 8 OS=Can | yes | no | 0.202 | 0.230 | 0.264 | 0.0003 | |
| Q71VM4 | 526 | Importin subunit alpha-1a | no | no | 0.165 | 0.209 | 0.282 | 0.0008 |
| >sp|Q6BTZ4|VAC8_DEBHA Vacuolar protein 8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=VAC8 PE=3 SV=4 | Back alignment and function desciption |
|---|
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 441 ITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQ 500
I +S AL+ A L + VQ N+ AL+ +T E EL + P
Sbjct: 165 IAKSGALIPLAKLAKSKDIRVQRNATGALLNMTHSGENRQELVNAGAVP----------V 214
Query: 501 LFRIIEKADSDLLIPCIKAVGNLA------RTFKATETRMIVPLVKLLDEREAEVSREAS 554
L ++ D+D+ C A+ N+A + TE +++ LV L+D V +A+
Sbjct: 215 LVSLLSNEDADVQYYCTTALSNIAVDEMNRKKLSTTEPKLVSQLVNLMDSPSPRVQCQAT 274
Query: 555 IALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALH 609
+AL A SD S + I+ AGG HLVQL+ Q + L+A+ + I++H
Sbjct: 275 LALRNLA-SD----SGYQVEIVRAGGLPHLVQLLTCNHQPLVLAAVACIRNISIH 324
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Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) |
| >sp|Q59MN0|VAC8_CANAL Vacuolar protein 8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VAC8 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 441 ITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQ 500
I +S AL+ L + VQ N+ AL+ +T E EL + P
Sbjct: 165 IAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSGENRQELVNAGAVP----------V 214
Query: 501 LFRIIEKADSDLLIPCIKAVGNLA------RTFKATETRMIVPLVKLLDEREAEVSREAS 554
L ++ D+D+ C A+ N+A + +TE +++ LV L+D V +A+
Sbjct: 215 LVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQLVHLMDSPSPRVQCQAT 274
Query: 555 IALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALH 609
+AL A SD S + I+ AGG HLVQL+ Q + L+A+ + I++H
Sbjct: 275 LALRNLA-SD----SGYQVEIVRAGGLPHLVQLLTCNHQPLVLAAVACIRNISIH 324
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Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Vacuole inheritance has a role in the regulation of hyphal cell division. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
| >sp|Q757R0|VAC8_ASHGO Vacuolar protein 8 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=VAC8 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 441 ITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQ 500
I S AL+ L + VQ N+ AL+ +T E EL + P
Sbjct: 163 IAHSGALVPLTKLAKSKNIRVQRNATGALLNMTHSGENRKELVDAGAVP----------V 212
Query: 501 LFRIIEKADSDLLIPCIKAVGNLA------RTFKATETRMIVPLVKLLDEREAEVSREAS 554
L ++ +D+D+ C A+ N+A R TE R++ LV L D A V +A+
Sbjct: 213 LVSLLSSSDADVQYYCTTALSNIAVDESNRRKLSQTEPRLVSKLVVLTDSPSARVKCQAT 272
Query: 555 IALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSE 614
+AL A Y I+ AGG HLV+L+ + L+++ + I++H P +E
Sbjct: 273 LALRNLASDTGY-----QLEIVRAGGLSHLVKLIQCNSMPLVLASVACIRNISIH-PLNE 326
Query: 615 DL 616
L
Sbjct: 327 GL 328
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Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) |
| >sp|Q5EFZ4|VAC8_PICPA Vacuolar protein 8 OS=Komagataella pastoris GN=VAC8 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 21/175 (12%)
Query: 441 ITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQ 500
I S AL+ L + VQ N+ AL+ +T E EL + P
Sbjct: 164 IATSGALIPLTKLAKSKDLRVQRNATGALLNMTHSLENRQELVNAGSVP----------I 213
Query: 501 LFRIIEKADSDLLIPCIKAVGNLA------RTFKATETRMIVPLVKLLDEREAEVSREAS 554
L +++ D D+ C A+ N+A + +TE ++I LV+L+D V +A+
Sbjct: 214 LVQLLSSTDPDVQYYCTTALSNIAVDEGNRKKLASTEPKLISQLVQLMDSTSPRVQCQAT 273
Query: 555 IALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALH 609
+AL A NY I+ AGG +LV L+ Q + L+A+ + I++H
Sbjct: 274 LALRNLASDANY-----QLEIVRAGGLPNLVTLLNSTHQPLVLAAVACIRNISIH 323
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Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Pichia pastoris (taxid: 4922) |
| >sp|P39968|VAC8_YEAST Vacuolar protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAC8 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 441 ITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQ 500
I S AL+ L + VQ N+ AL+ +T E EL + P
Sbjct: 163 IATSGALIPLTKLAKSKHIRVQRNATGALLNMTHSEENRKELVNAGAVP----------V 212
Query: 501 LFRIIEKADSDLLIPCIKAVGNLA------RTFKATETRMIVPLVKLLDEREAEVSREAS 554
L ++ D D+ C A+ N+A + TE R++ LV L+D + V +A+
Sbjct: 213 LVSLLSSTDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQAT 272
Query: 555 IALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSE 614
+AL A +Y I+ AGG HLV+L+ + L+++ + I++H P +E
Sbjct: 273 LALRNLASDTSY-----QLEIVRAGGLPHLVKLIQSDSIPLVLASVACIRNISIH-PLNE 326
Query: 615 DL 616
L
Sbjct: 327 GL 328
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Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q6FJV1|VAC8_CANGA Vacuolar protein 8 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=VAC8 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 461 VQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAV 520
VQ N+ AL+ +T E EL + P L ++ D D+ C A+
Sbjct: 183 VQRNATGALLNMTHSEENRRELVNAGAVP----------VLVSLLSSNDPDVQYYCTTAL 232
Query: 521 GNLA------RTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKA 574
N+A + TE R++ LV L+D + V +A++AL A +Y
Sbjct: 233 SNIAVDEANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLASDTSY-----QLE 287
Query: 575 IISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALH 609
I+ AGG HLV L+ + L+++ + I++H
Sbjct: 288 IVRAGGLPHLVNLIQSESVPLILASVACIRNISIH 322
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Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) |
| >sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 185 IIEEGGVGPLLK-LVKEGKPEGQENAARAI-GLLGRDPESVEHMIHSGVCLVFAKILKEG 242
+I+ G V ++ L +E P+ Q AA A+ + E+ + +I G +F K+L
Sbjct: 111 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 170
Query: 243 PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKAT 299
V+ WA+ +AG+ PKC+DL + + L+ L EH+K +++ AT
Sbjct: 171 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL-----NEHTKLSMLRNAT 222
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Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 663 | ||||||
| 255586285 | 655 | conserved hypothetical protein [Ricinus | 0.984 | 0.996 | 0.818 | 0.0 | |
| 224134082 | 659 | predicted protein [Populus trichocarpa] | 0.987 | 0.993 | 0.812 | 0.0 | |
| 356559286 | 668 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.986 | 0.778 | 0.0 | |
| 357483789 | 687 | Vacuolar protein [Medicago truncatula] g | 0.995 | 0.960 | 0.745 | 0.0 | |
| 147826595 | 648 | hypothetical protein VITISV_008543 [Viti | 0.972 | 0.995 | 0.757 | 0.0 | |
| 255574758 | 656 | conserved hypothetical protein [Ricinus | 0.975 | 0.986 | 0.735 | 0.0 | |
| 15239298 | 651 | armadillo repeat only 2 protein [Arabido | 0.974 | 0.992 | 0.737 | 0.0 | |
| 297794395 | 652 | hypothetical protein ARALYDRAFT_920111 [ | 0.974 | 0.990 | 0.743 | 0.0 | |
| 225431126 | 637 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.995 | 0.752 | 0.0 | |
| 356502878 | 644 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.989 | 0.750 | 0.0 |
| >gi|255586285|ref|XP_002533794.1| conserved hypothetical protein [Ricinus communis] gi|223526267|gb|EEF28581.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1096 bits (2835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/665 (81%), Positives = 592/665 (89%), Gaps = 12/665 (1%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYER 60
MAD VKQILA+PIQLADQV+K+ADEA+S KQ+CAELKSKTEKLA LLRQAARAS DLYER
Sbjct: 1 MADLVKQILARPIQLADQVIKSADEASSFKQECAELKSKTEKLATLLRQAARASPDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PTRRII+DTEQVL+KAL+LV K RANG++KRVFTIIPAAAFRKMSSQLENSIGDVSWLLR
Sbjct: 61 PTRRIIEDTEQVLDKALTLVQKCRANGLMKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
Query: 121 VSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDR 180
VSASA++RDDEYLGLPPIAANEPILCLIWEQ+AIL T GSL+ +SDAAASLVSLARDNDR
Sbjct: 121 VSASADERDDEYLGLPPIAANEPILCLIWEQIAILST-GSLDDRSDAAASLVSLARDNDR 179
Query: 181 YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILK 240
YGKLI+EEGGV PLLKLVKEGK EGQENAARAIGLLGRDPESVE+MI +GVC VFAKILK
Sbjct: 180 YGKLILEEGGVLPLLKLVKEGKMEGQENAARAIGLLGRDPESVEYMIQTGVCTVFAKILK 239
Query: 241 EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS-KAT 299
EGPMKVQAVVAWAVSELA NYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAI S KA
Sbjct: 240 EGPMKVQAVVAWAVSELAANYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIASHKAI 299
Query: 300 SIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKV 359
SIHAVV+ASN N+ N NKV+ HS IPHPMGN+TP+Q+HNVVTNTMA
Sbjct: 300 SIHAVVLASN--NSTNVASDMNKVVSAATDDDHSRIPHPMGNQTPNQLHNVVTNTMAANA 357
Query: 360 GTKPVQKQGNVINQGTDVKSNGQD-NNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAY 418
+K Q+ + + G +VKSN N +KQNHQ H S G + KGRELEDPATKA
Sbjct: 358 ASKAPQR---LNSNGANVKSNSNGFNGLKQNHQQNH----SLSGVSLKGRELEDPATKAN 410
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
MKAMAARALWHLAKGNSPICR+ITESRALLCFAVLLEKGPEDVQ++SAMALMEITAVAEK
Sbjct: 411 MKAMAARALWHLAKGNSPICRNITESRALLCFAVLLEKGPEDVQFHSAMALMEITAVAEK 470
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPL 538
DA+LRRSAFKPN+PACKAV+DQL +IIEKADSDLL+PCIKA+GNLARTF+ATETRMI PL
Sbjct: 471 DADLRRSAFKPNSPACKAVIDQLLKIIEKADSDLLLPCIKAIGNLARTFRATETRMIAPL 530
Query: 539 VKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLS 598
VKLLDEREAE+SREASIALTKFAC++NYLH DHSKAII AGGAKHL+QLVYFGE IVQLS
Sbjct: 531 VKLLDEREAEISREASIALTKFACTENYLHFDHSKAIIQAGGAKHLIQLVYFGEHIVQLS 590
Query: 599 ALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQSRG 658
AL+LLCYIA HVPDSE+LAQAEVLTVLEW SKQS +TQDE D LL DAKSRLELYQSRG
Sbjct: 591 ALLLLCYIARHVPDSEELAQAEVLTVLEWASKQSFVTQDEMFDSLLPDAKSRLELYQSRG 650
Query: 659 SRGFH 663
SRGFH
Sbjct: 651 SRGFH 655
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134082|ref|XP_002327751.1| predicted protein [Populus trichocarpa] gi|222836836|gb|EEE75229.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/667 (81%), Positives = 591/667 (88%), Gaps = 12/667 (1%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYER 60
MAD VKQILAKPIQLADQV+K ADEA+S KQ+C ELKSKTEKLA LLRQAARASSDLYER
Sbjct: 1 MADLVKQILAKPIQLADQVIKVADEASSFKQECGELKSKTEKLATLLRQAARASSDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
P RRII+DTEQVL+KAL LVIK RANG++KRVFTIIPAAAFRKM SQLENSIGDVSWLLR
Sbjct: 61 PARRIIEDTEQVLDKALILVIKCRANGLMKRVFTIIPAAAFRKMGSQLENSIGDVSWLLR 120
Query: 121 VSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDR 180
VSASA+DRDDEYLGLPPIAANEPILCLIWEQ+AILYT GS++ +SDAAASLVSLARDNDR
Sbjct: 121 VSASADDRDDEYLGLPPIAANEPILCLIWEQIAILYT-GSVDDRSDAAASLVSLARDNDR 179
Query: 181 YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILK 240
YGKLIIEEGGV PLLKLVKEGK GQENAARAIGLLGRDPESVEHMI +GVC VFAKILK
Sbjct: 180 YGKLIIEEGGVPPLLKLVKEGKLAGQENAARAIGLLGRDPESVEHMIVAGVCSVFAKILK 239
Query: 241 EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATS 300
+GPMKVQ VVAWAVSE A NYPKCQDLFAQHNIIRLLV H+AFETVQEHSKYAIVSKATS
Sbjct: 240 DGPMKVQVVVAWAVSEFAANYPKCQDLFAQHNIIRLLVSHIAFETVQEHSKYAIVSKATS 299
Query: 301 IHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVG 360
IHA+V+ASN N+N NK + DED+ S IP+P +K+P+Q+H VVTNTMAM
Sbjct: 300 IHALVIASN---NSNVTNDVNKQVVDEDQ---SRIPYPTRDKSPNQLHTVVTNTMAMNAA 353
Query: 361 TK-PVQKQGNVINQGTDV---KSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATK 416
TK P+QK G N T V KSNG NN+KQN+Q HQH S G + KGRELEDPATK
Sbjct: 354 TKRPLQKPGANTNGATHVNFAKSNG-SNNLKQNYQPHHQHNHSISGVSVKGRELEDPATK 412
Query: 417 AYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVA 476
A MKA+AARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYN AMALMEITAVA
Sbjct: 413 ANMKAVAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNCAMALMEITAVA 472
Query: 477 EKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV 536
EKDA+LRRSAFKPN+PACKAV+DQ+ +IIEKADS+LL+PCI+A+GNLARTF+ATETRMI
Sbjct: 473 EKDADLRRSAFKPNSPACKAVIDQMLKIIEKADSELLMPCIRAIGNLARTFRATETRMIS 532
Query: 537 PLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQ 596
PLV+LLDEREAEVSREA+IAL KFA +NYLH DHSKAIISAGGAKHL+QLVYFGE IVQ
Sbjct: 533 PLVRLLDEREAEVSREAAIALAKFAGKENYLHLDHSKAIISAGGAKHLIQLVYFGELIVQ 592
Query: 597 LSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656
LSAL LLCYIALHVPDSE+LAQAEVLTVLEW SKQS+M QDE ++ LL +AKSRLELYQS
Sbjct: 593 LSALPLLCYIALHVPDSEELAQAEVLTVLEWASKQSYMVQDEKLEALLPEAKSRLELYQS 652
Query: 657 RGSRGFH 663
RGSRGFH
Sbjct: 653 RGSRGFH 659
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559286|ref|XP_003547931.1| PREDICTED: uncharacterized protein LOC100794693 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/668 (77%), Positives = 580/668 (86%), Gaps = 9/668 (1%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATS-MKQDCAELKSKTEKLAALLRQAARASSDLYE 59
MAD VKQ+LAKPIQLADQV KAA+EA+S KQ+C ELKSKTEKLA LLRQAARASSDLYE
Sbjct: 1 MADIVKQLLAKPIQLADQVAKAAEEASSSFKQECLELKSKTEKLAGLLRQAARASSDLYE 60
Query: 60 RPTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLL 119
RPTRRII DTE VL+KALSL +K RANG++KRVF+IIPAAAFRKMSSQLENSIGDVSWLL
Sbjct: 61 RPTRRIIADTELVLDKALSLTLKCRANGLMKRVFSIIPAAAFRKMSSQLENSIGDVSWLL 120
Query: 120 RVSASAEDR-DDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDN 178
RVSA AEDR D EYLGLPPIAANEPIL LIWEQVAIL+T GSL+ +SDAAASLVSLARDN
Sbjct: 121 RVSAPAEDRADTEYLGLPPIAANEPILGLIWEQVAILHT-GSLDDRSDAAASLVSLARDN 179
Query: 179 DRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKI 238
DRYGKLIIEEGGVGPLLKL+KEGK EGQENAARAIGLLGRDPESVE MIH+GVC VFAK+
Sbjct: 180 DRYGKLIIEEGGVGPLLKLIKEGKKEGQENAARAIGLLGRDPESVELMIHAGVCSVFAKV 239
Query: 239 LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS-K 297
LKEGPMKVQAVVAWAVSELA YP CQDLFAQHNI+RLLV HLAFETVQEHSKYAIVS K
Sbjct: 240 LKEGPMKVQAVVAWAVSELAAKYPTCQDLFAQHNIVRLLVSHLAFETVQEHSKYAIVSNK 299
Query: 298 ATSIHAVVVASNKTNNANANGSN-NKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMA 356
TSIHAVV+ASN + N + S+ K +DE+KQ S + HP+G+++ +QMH VVT+TMA
Sbjct: 300 PTSIHAVVMASNNSGNNSNGNSSVKKDSEDEEKQMQSRMQHPLGDRSTNQMHRVVTSTMA 359
Query: 357 MKVGTKPVQKQGNVINQGT-DVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPAT 415
M K Q+Q N N+GT +++ + N KQNHQS HQ S G N KGRELEDP
Sbjct: 360 MHAANK--QQQPNQGNEGTLNLQGPKVNGNGKQNHQS-HQQSFSYSGINMKGRELEDPEN 416
Query: 416 KAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAV 475
KAYMKAMAARAL LAKGN ICRSITESRALLCFA+LLEKG EDV+YNSA+A+ EITAV
Sbjct: 417 KAYMKAMAARALRQLAKGNVAICRSITESRALLCFAILLEKGSEDVKYNSALAVKEITAV 476
Query: 476 AEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMI 535
AEKDAELRRSAFKPN+PACKAVVDQ+ +IIEK D+ LLIPC+KA+GNLARTF+ATETR+I
Sbjct: 477 AEKDAELRRSAFKPNSPACKAVVDQVLKIIEKEDTKLLIPCVKAIGNLARTFRATETRII 536
Query: 536 VPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIV 595
PLV+LLDEREAEVSREA+I+LTKFA S+NYLH DHSKAIISAGGAKHLVQLVY GEQ V
Sbjct: 537 GPLVRLLDEREAEVSREAAISLTKFASSENYLHLDHSKAIISAGGAKHLVQLVYLGEQTV 596
Query: 596 QLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQ 655
Q+SALVLL YIALHVPDSE+LA+AEVL VLEW SKQ ++TQDET++ LLQ++K RLELYQ
Sbjct: 597 QISALVLLSYIALHVPDSEELARAEVLGVLEWASKQPNVTQDETLEALLQESKGRLELYQ 656
Query: 656 SRGSRGFH 663
SRGSRGF
Sbjct: 657 SRGSRGFQ 664
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357483789|ref|XP_003612181.1| Vacuolar protein [Medicago truncatula] gi|215598344|tpg|DAA06358.1| TPA_inf: ARO1-like protein 1 [Medicago truncatula] gi|355513516|gb|AES95139.1| Vacuolar protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/685 (74%), Positives = 572/685 (83%), Gaps = 25/685 (3%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYER 60
M D VKQILAKPIQLADQV KAADEA+S KQ+C+ELKSKTEKLA LLRQAARASSDLYER
Sbjct: 1 MGDIVKQILAKPIQLADQVTKAADEASSFKQECSELKSKTEKLATLLRQAARASSDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PT+RII++TEQVL+KALSLV+K RANG++KRVFTIIPAAAFRK SS LENSIGDVSWLLR
Sbjct: 61 PTKRIIEETEQVLDKALSLVLKCRANGLMKRVFTIIPAAAFRKTSSHLENSIGDVSWLLR 120
Query: 121 VSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDR 180
VSA A+DR EYLGLPPIAANEPILC IWEQ+A+L+T GS E +SDAAASLVSLAR +DR
Sbjct: 121 VSAPADDRGGEYLGLPPIAANEPILCFIWEQIAMLFT-GSQEVRSDAAASLVSLARGSDR 179
Query: 181 YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILK 240
YGKLIIEEGGVGPLLKL+KEGK +GQENAARAIGLLGRD ESVEHMIH GVC VFAKILK
Sbjct: 180 YGKLIIEEGGVGPLLKLIKEGKADGQENAARAIGLLGRDAESVEHMIHVGVCSVFAKILK 239
Query: 241 EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS-KAT 299
EGPMKVQ VVAWAVSELA NYPKCQ+LFAQHNIIRLLVGHLAFETV+EHSKYAIVS KA
Sbjct: 240 EGPMKVQGVVAWAVSELAANYPKCQELFAQHNIIRLLVGHLAFETVEEHSKYAIVSMKAN 299
Query: 300 SIHAVVVASNKTNNANANGSNNKVIDDED-------KQYHSLIPHPMGNKTPSQMHNVVT 352
SIHA VV ++ NN+++N + K ++ED ++ + HP+G + P +H V+T
Sbjct: 300 SIHAAVVMASNNNNSSSNLNPKKGTENEDGVVVGGGNKHGRVSHHPLGER-PRNLHRVIT 358
Query: 353 NTMAMKVGTKPVQKQGNVINQGTDVKSNGQD--------------NNVKQNHQSQHQHGL 398
+TMA+ +K +GN NQ ++ +N + KQ + + HQ
Sbjct: 359 STMAIHAASKQ-PNEGNEANQNQNILANSNTPNGNGLGNGNGNGNDGGKQGNHNNHQRNY 417
Query: 399 SNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP 458
S+ G N KGRE ED TKA MK MAARALWHLAKGN ICRSITESRALLCF+VLLEKGP
Sbjct: 418 SHSGINMKGRESEDAETKASMKEMAARALWHLAKGNVAICRSITESRALLCFSVLLEKGP 477
Query: 459 EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIK 518
E VQYNSAMALMEITAVAEKDAELR+SAFKPN+PACKAVVDQ+ +IIEKADSDLLIPC+K
Sbjct: 478 EAVQYNSAMALMEITAVAEKDAELRKSAFKPNSPACKAVVDQVLKIIEKADSDLLIPCVK 537
Query: 519 AVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISA 578
A+GNLARTFKATETRMI PLVKLLDEREAEVSREASIAL KFA S+NYLH DHS AIISA
Sbjct: 538 AIGNLARTFKATETRMIGPLVKLLDEREAEVSREASIALRKFAGSENYLHVDHSNAIISA 597
Query: 579 GGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDE 638
GGAKHL+QLVYFGEQ+VQ+ ALVLL YIALHVPDSE+LA AEVL VLEW SKQS M DE
Sbjct: 598 GGAKHLIQLVYFGEQMVQIPALVLLSYIALHVPDSEELALAEVLGVLEWASKQSFMQHDE 657
Query: 639 TVDPLLQDAKSRLELYQSRGSRGFH 663
T++ LLQ+AKSRLELYQSRGSRGFH
Sbjct: 658 TLEELLQEAKSRLELYQSRGSRGFH 682
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147826595|emb|CAN77454.1| hypothetical protein VITISV_008543 [Vitis vinifera] gi|215598266|tpg|DAA06351.1| TPA_inf: ARO1-like protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/659 (75%), Positives = 562/659 (85%), Gaps = 14/659 (2%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYER 60
MAD VK+IL KPIQLADQV+KAA +A+S K +C ELK+KTEKLA LLRQAARASSDLYER
Sbjct: 1 MADMVKEILGKPIQLADQVIKAAGQASSSKLECGELKAKTEKLAQLLRQAARASSDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PTRRIID+T QVL+KALSLV+K RANG++KRVFTIIP A FRKM +QL+N IGDVSWLLR
Sbjct: 61 PTRRIIDETVQVLDKALSLVLKCRANGLMKRVFTIIPIAGFRKMLAQLDNCIGDVSWLLR 120
Query: 121 VSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDR 180
VSAS +DRD+ LGLPPIAANEPILCLIWE +AILYT GSLE +++AAA+LVSLARDN+R
Sbjct: 121 VSASGDDRDNGCLGLPPIAANEPILCLIWEHIAILYT-GSLEDRAEAAAALVSLARDNER 179
Query: 181 YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILK 240
YGKLIIEEGGV PLLKL+KEG+ EGQENAARAIGLLGRDPES+E MIH+G C VFAK+LK
Sbjct: 180 YGKLIIEEGGVVPLLKLMKEGRVEGQENAARAIGLLGRDPESIEQMIHAGACSVFAKVLK 239
Query: 241 EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS-KAT 299
EGPMKVQA VAWAV+EL NYPKCQDLFAQHNIIRLLVGHLAFET+QEHSKYAI + KAT
Sbjct: 240 EGPMKVQAXVAWAVAELTANYPKCQDLFAQHNIIRLLVGHLAFETIQEHSKYAITTNKAT 299
Query: 300 SIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKV 359
SIHAVV+ASN N+NA N D +D + H+ IP P+GN+ P+QM VVTNTMAM
Sbjct: 300 SIHAVVMASN---NSNATALNKGGTDHDDDR-HTQIPRPVGNQNPNQMQKVVTNTMAMNS 355
Query: 360 GTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYM 419
+K Q+ N NQ V S N K NHQ H H S +G KGRELEDPATK M
Sbjct: 356 QSKLSQRLNNGANQTNHVNSE----NAKXNHQ-HHHHTYSGHG--IKGRELEDPATKXEM 408
Query: 420 KAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKD 479
K+MAA ALWHLAKGNS ICR+ITESRALLCFAVLLE+G +V+ +SAMALMEITAVAE+D
Sbjct: 409 KSMAAXALWHLAKGNSHICRNITESRALLCFAVLLEQGIGEVKLHSAMALMEITAVAEQD 468
Query: 480 AELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLV 539
ELRRSAFKPN+PACKAVVDQL +IIEKADS+LLIPC+KA+GNLARTFKATETRMI PLV
Sbjct: 469 TELRRSAFKPNSPACKAVVDQLLQIIEKADSELLIPCVKAIGNLARTFKATETRMISPLV 528
Query: 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSA 599
+LLDEREAE+SREASIALTKFAC+DNYLH+DH KAIISAGGAKHLVQLVYFGEQIVQ+SA
Sbjct: 529 RLLDEREAEISREASIALTKFACTDNYLHTDHCKAIISAGGAKHLVQLVYFGEQIVQISA 588
Query: 600 LVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQS-HMTQDETVDPLLQDAKSRLELYQSR 657
LVLLCYIALHVPDSE+LA A+VLTVLEW SKQ M QDETV+ LL +AK L+LYQS+
Sbjct: 589 LVLLCYIALHVPDSEELAMAQVLTVLEWASKQGWFMVQDETVESLLDEAKKGLKLYQSK 647
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574758|ref|XP_002528287.1| conserved hypothetical protein [Ricinus communis] gi|223532324|gb|EEF34125.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/672 (73%), Positives = 557/672 (82%), Gaps = 25/672 (3%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYER 60
MAD VK+ILA+PIQLADQV K+ADEA S KQDC ELK+KTEKLA LLRQAARAS+DLYER
Sbjct: 1 MADIVKEILARPIQLADQVTKSADEAQSFKQDCLELKAKTEKLATLLRQAARASNDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PTRRIIDDTEQVL+KAL+LVIK RA GI+KR+FTIIP+ AFRK S QLENSIGDVSWLLR
Sbjct: 61 PTRRIIDDTEQVLDKALALVIKCRATGIMKRMFTIIPSGAFRKTSMQLENSIGDVSWLLR 120
Query: 121 VSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDR 180
VSASA DRDDEYLGLPPIAANEPILCLIWEQVAIL+T GSLE +SDAAASLVSLARDNDR
Sbjct: 121 VSASAGDRDDEYLGLPPIAANEPILCLIWEQVAILFT-GSLEERSDAAASLVSLARDNDR 179
Query: 181 YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILK 240
YGKLIIEEGGV PLLKL KEGK EGQENAARAIGLLGRDPESVE ++++GVC VFAKILK
Sbjct: 180 YGKLIIEEGGVPPLLKLAKEGKMEGQENAARAIGLLGRDPESVEQIVNAGVCSVFAKILK 239
Query: 241 EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKAT- 299
EG MKVQ VVAWAVSELA N+PKCQD FAQ+NIIR LV HLAFETVQEHSKY I SK T
Sbjct: 240 EGHMKVQLVVAWAVSELAANHPKCQDHFAQNNIIRFLVSHLAFETVQEHSKYTIASKQTM 299
Query: 300 SIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMK- 358
SIH+V++ASN +N + ED++ S I HPM N TPSQMHNV+TNT+AMK
Sbjct: 300 SIHSVLMASNDSNEKG---------EHEDEK--SKISHPMNNSTPSQMHNVITNTLAMKN 348
Query: 359 ----VGTKPVQKQGNVINQ---GTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELE 411
TKP Q Q N VK N Q+N +Q QH H L+ G + KGRE E
Sbjct: 349 QNPNTITKPNQSQSPTKNMPPLANQVKGN-QNNARQQKGHPQH-HVLT--GTSIKGREFE 404
Query: 412 DPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALME 471
DP TKA MKAMAARALW L GN ICRSITESRALLCFAVLLEKGP+DVQ SAMALME
Sbjct: 405 DPGTKAQMKAMAARALWQLCIGNVTICRSITESRALLCFAVLLEKGPDDVQSYSAMALME 464
Query: 472 ITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE 531
ITAVAE+ ++LRRSAFKP +PA KAVVDQ+ ++IEKADS LL PC+KA+GNLARTF+ATE
Sbjct: 465 ITAVAEQTSDLRRSAFKPTSPAAKAVVDQMLKVIEKADSVLLTPCVKAIGNLARTFRATE 524
Query: 532 TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG 591
TR+I PLVKLLDERE E++ EA+IAL KFA ++N+L +HSKAIISAGGAKHL+QLVYFG
Sbjct: 525 TRIIGPLVKLLDEREPEITMEAAIALNKFAAAENFLCVNHSKAIISAGGAKHLIQLVYFG 584
Query: 592 EQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651
EQ+VQ+ +L+LLCYI+L+ PDSE LA EVL VLEW+SKQ+H+T + T++ LLQDAKSRL
Sbjct: 585 EQMVQIPSLILLCYISLNCPDSEVLANEEVLIVLEWSSKQAHLTHEPTIESLLQDAKSRL 644
Query: 652 ELYQSRGSRGFH 663
ELYQSRGSRGFH
Sbjct: 645 ELYQSRGSRGFH 656
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239298|ref|NP_201421.1| armadillo repeat only 2 protein [Arabidopsis thaliana] gi|10177135|dbj|BAB10425.1| unnamed protein product [Arabidopsis thaliana] gi|22531060|gb|AAM97034.1| putative protein [Arabidopsis thaliana] gi|23198098|gb|AAN15576.1| putative protein [Arabidopsis thaliana] gi|332010793|gb|AED98176.1| armadillo repeat only 2 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/666 (73%), Positives = 557/666 (83%), Gaps = 20/666 (3%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYER 60
MAD VKQILAKPIQL+DQVVKAADEA+S KQ+C ELK+KTEKLA LLRQAARAS+DLYER
Sbjct: 1 MADIVKQILAKPIQLSDQVVKAADEASSFKQECGELKAKTEKLAGLLRQAARASNDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PTRRIIDDTEQ+LEKALSLV+K RANG++KRVFTIIPAAAFRKMS QLENSIGDVSWLLR
Sbjct: 61 PTRRIIDDTEQMLEKALSLVLKCRANGLMKRVFTIIPAAAFRKMSGQLENSIGDVSWLLR 120
Query: 121 VSASAEDRDDE-YLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDND 179
VSA AEDR D YLGLPPIAANEPILCLIWEQ+AILYT GSLE +SDAAASLVSLARDND
Sbjct: 121 VSAPAEDRGDAGYLGLPPIAANEPILCLIWEQIAILYT-GSLEDRSDAAASLVSLARDND 179
Query: 180 RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239
RY KLIIEEGGV PLLKL+KEGKPEGQENAARA+GLLGRDPESVEHMIH G C VF K+L
Sbjct: 180 RYTKLIIEEGGVVPLLKLLKEGKPEGQENAARALGLLGRDPESVEHMIHGGACSVFGKVL 239
Query: 240 KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS--K 297
KEGPMKVQAVVAWA SEL N+PKCQD+FAQHN IRLLVGHLAFETVQEHSKYAI + K
Sbjct: 240 KEGPMKVQAVVAWATSELVSNHPKCQDVFAQHNAIRLLVGHLAFETVQEHSKYAIATNNK 299
Query: 298 ATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAM 357
ATSIH V + + N+ + + K +D++ S IPHP G + P+QMHNVV NTMA+
Sbjct: 300 ATSIHHAVALAKENPNSTSATALPKGLDED----QSSIPHPTGKQMPNQMHNVVVNTMAV 355
Query: 358 KVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKA 417
+ P + N ++Q VK Q ++V+Q HQ+ S+ +K RELED ATK
Sbjct: 356 R-ANPPRKSTSNGVSQSNGVK---QPSSVQQ-----HQNSTSSA---SKTRELEDSATKC 403
Query: 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAE 477
+KAMAARALW LAKGNS IC+SITESRALLCFAVL+EKG E+V+YNSAMALMEITAVAE
Sbjct: 404 QIKAMAARALWKLAKGNSTICKSITESRALLCFAVLIEKGDEEVRYNSAMALMEITAVAE 463
Query: 478 KDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVP 537
+DA+LRRSAFKPN+PACKAVVDQ+ RIIE ADS+LLIPCI+ +GNLARTF+ATETRMI P
Sbjct: 464 QDADLRRSAFKPNSPACKAVVDQVLRIIEIADSELLIPCIRTIGNLARTFRATETRMIGP 523
Query: 538 LVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQL 597
LVKLLDERE EV+ EA+ ALTKFAC+ NYLH DHS+ II AGG KHLVQL YFGE VQ+
Sbjct: 524 LVKLLDEREPEVTGEAAAALTKFACTANYLHKDHSRGIIEAGGGKHLVQLAYFGEGGVQI 583
Query: 598 SALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQSR 657
AL LLCYIAL+VPDSE LA+ EVL VLEW SKQS +TQ E+++ LLQ+AK L+LYQ R
Sbjct: 584 PALELLCYIALNVPDSEQLAKDEVLAVLEWASKQSWVTQLESLEALLQEAKRGLDLYQQR 643
Query: 658 GSRGFH 663
GSRG++
Sbjct: 644 GSRGYN 649
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297794395|ref|XP_002865082.1| hypothetical protein ARALYDRAFT_920111 [Arabidopsis lyrata subsp. lyrata] gi|297310917|gb|EFH41341.1| hypothetical protein ARALYDRAFT_920111 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/667 (74%), Positives = 561/667 (84%), Gaps = 21/667 (3%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYER 60
MAD VKQILAKPIQL+DQVVKAADEA+S KQ+C ELK+KTEKLA LLRQAARAS+DLYER
Sbjct: 1 MADIVKQILAKPIQLSDQVVKAADEASSFKQECGELKAKTEKLAGLLRQAARASNDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PTRRIIDDTEQ+LEKALSLV+K RANG++KRVFTIIPAAAFRKMS+QLENSIGDVSWLLR
Sbjct: 61 PTRRIIDDTEQMLEKALSLVLKCRANGLMKRVFTIIPAAAFRKMSAQLENSIGDVSWLLR 120
Query: 121 VSASAEDRDDE-YLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDND 179
VSA AEDR D YLGLPPIAANEPILCLIWEQ+AILYT GSLE +SDAAASLVSLARDND
Sbjct: 121 VSAPAEDRGDAGYLGLPPIAANEPILCLIWEQIAILYT-GSLEDRSDAAASLVSLARDND 179
Query: 180 RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239
RY KLIIEEGGV PLLKL+KEGKPEGQENAARA+GLLGRDPESVEHMIH G C VF K+L
Sbjct: 180 RYTKLIIEEGGVVPLLKLLKEGKPEGQENAARALGLLGRDPESVEHMIHGGACSVFGKVL 239
Query: 240 KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS--K 297
KEGPMKVQAVVAWA SEL N+PKCQD+FAQHN IRLLVGHLAFETVQEHSKYAI + K
Sbjct: 240 KEGPMKVQAVVAWATSELVSNHPKCQDVFAQHNAIRLLVGHLAFETVQEHSKYAIATTNK 299
Query: 298 ATSIH-AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMA 356
ATSIH AV +A N+ ++ + K +D++ S IPHP G + P+QMHNVV NTMA
Sbjct: 300 ATSIHHAVALAKENPNSTSSAAALPKGLDED----QSSIPHPTGKQMPNQMHNVVVNTMA 355
Query: 357 MKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATK 416
++ P + N ++Q VK + N Q QHQ+ S+ +K RELED ATK
Sbjct: 356 VR-ANPPRKSTSNGVSQSNGVK-------LPSNLQ-QHQNSTSSA---SKTRELEDAATK 403
Query: 417 AYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVA 476
+KAMAARALW LAKGNS IC+SITESRALLCFAVL++KG E+V+YNSAMALMEITAVA
Sbjct: 404 CQIKAMAARALWKLAKGNSTICKSITESRALLCFAVLIDKGNEEVRYNSAMALMEITAVA 463
Query: 477 EKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV 536
E+DA+LRRSAFKPN+PACKAVVDQ+ RIIE ADS+LLIPCI+ +GNLARTF+ATETRMI
Sbjct: 464 EQDADLRRSAFKPNSPACKAVVDQVLRIIEIADSELLIPCIRTIGNLARTFRATETRMIG 523
Query: 537 PLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQ 596
PLVKLLDERE EV+ EA++ALTKFAC+DNYLH DHS+ II AGG KHLVQL YFGE VQ
Sbjct: 524 PLVKLLDEREPEVTVEAAVALTKFACTDNYLHKDHSRGIIEAGGGKHLVQLAYFGESGVQ 583
Query: 597 LSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656
+ AL LLCYIAL+VPDSE LA+ EVL VLEW SKQS +TQ E ++ LL +AKSRL+LYQS
Sbjct: 584 IPALELLCYIALNVPDSEQLAKDEVLAVLEWASKQSWVTQLERLEALLLEAKSRLDLYQS 643
Query: 657 RGSRGFH 663
RGSRGF+
Sbjct: 644 RGSRGFN 650
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431126|ref|XP_002266578.1| PREDICTED: uncharacterized protein LOC100253942 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/659 (75%), Positives = 558/659 (84%), Gaps = 25/659 (3%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYER 60
MAD VK+IL KPIQLADQV+KAA +A+S K +C ELK+KTEKLA LLRQAARASSDLYER
Sbjct: 1 MADMVKEILGKPIQLADQVIKAAGQASSSKPECGELKAKTEKLAQLLRQAARASSDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PTRRIID+T QVL+KALSLV+K RANG++KRVFTIIP A FRKM +QL+N IGDVSWLLR
Sbjct: 61 PTRRIIDETVQVLDKALSLVLKCRANGLMKRVFTIIPNAGFRKMLAQLDNCIGDVSWLLR 120
Query: 121 VSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDR 180
VSAS +DRD+ LGLPPIAANEPILCLIWE +AILYT GSLE +SDAAA+LVSLARDNDR
Sbjct: 121 VSASGDDRDNGCLGLPPIAANEPILCLIWEHIAILYT-GSLEDRSDAAAALVSLARDNDR 179
Query: 181 YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILK 240
YGKLIIEEGGV PLLKL+KEG+ EGQENAARAIGLLGRDPES+E MIH+G C VFAK+LK
Sbjct: 180 YGKLIIEEGGVVPLLKLMKEGRVEGQENAARAIGLLGRDPESIEQMIHAGACSVFAKVLK 239
Query: 241 EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS-KAT 299
EGPMKVQAVVAWAV+EL NYPKCQDLFAQHNIIRLLVGHLAFET+QEHSKYAI + KAT
Sbjct: 240 EGPMKVQAVVAWAVAELTANYPKCQDLFAQHNIIRLLVGHLAFETIQEHSKYAITTNKAT 299
Query: 300 SIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKV 359
SIHAVV+ASN N+NA N D +D + H+ IP P+GN+ P+QM VVTNTMAM
Sbjct: 300 SIHAVVMASN---NSNATALNKGGTDHDDDR-HTQIPRPVGNQNPNQMQKVVTNTMAMNS 355
Query: 360 GTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYM 419
+K Q+ N NQ + H H + G KGRELEDPATKA M
Sbjct: 356 QSKLSQRLNNGANQ------------------TNHHHHHTYSGHGIKGRELEDPATKAEM 397
Query: 420 KAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKD 479
K+MAA+ALWHLAKGNS ICR+ITESRALLCFAVLLE+G +V+ +SAMALMEITAVAE+D
Sbjct: 398 KSMAAKALWHLAKGNSHICRNITESRALLCFAVLLEQGIGEVKLHSAMALMEITAVAEQD 457
Query: 480 AELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLV 539
ELRRSAFKPN+PACKAVVDQL +IIEKADS+LLIPC+KA+GNLARTFKATETRMI PLV
Sbjct: 458 TELRRSAFKPNSPACKAVVDQLLQIIEKADSELLIPCVKAIGNLARTFKATETRMISPLV 517
Query: 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSA 599
+LLDEREAE+SREASIALTKFAC+DNYLH+DH KAIISAGGAKHLVQLVYFGEQIVQ+SA
Sbjct: 518 RLLDEREAEISREASIALTKFACTDNYLHTDHCKAIISAGGAKHLVQLVYFGEQIVQISA 577
Query: 600 LVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQS-HMTQDETVDPLLQDAKSRLELYQSR 657
LVLLCYIALHVPDSE+LA A+VLTVLEW SKQ M QDETV+ LL +AK L+LYQS+
Sbjct: 578 LVLLCYIALHVPDSEELAMAQVLTVLEWASKQGWFMVQDETVESLLDEAKKGLKLYQSK 636
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502878|ref|XP_003520241.1| PREDICTED: uncharacterized protein LOC100808385 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/666 (75%), Positives = 561/666 (84%), Gaps = 29/666 (4%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATS-MKQDCAELKSKTEKLAALLRQAARASSDLYE 59
MAD VKQ+LAKPIQLADQV KAA+EA+S KQ+C ELKSK +KLAALLR AARASSDLYE
Sbjct: 1 MADIVKQLLAKPIQLADQVAKAAEEASSSFKQECLELKSKADKLAALLRLAARASSDLYE 60
Query: 60 RPTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLL 119
RPTRRII DTE VL+KALSL +K RANG++KRVF+IIP AAFRKMSSQLENSIGDVSWLL
Sbjct: 61 RPTRRIIADTELVLDKALSLTLKCRANGLMKRVFSIIPTAAFRKMSSQLENSIGDVSWLL 120
Query: 120 RVSASAEDR-DDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDN 178
RVS AE+R D EYLGLPPIAANEPIL LIWEQVA+L+T GSL+ +SDAAASLVSLARDN
Sbjct: 121 RVSTPAEERADTEYLGLPPIAANEPILGLIWEQVAVLHT-GSLDDRSDAAASLVSLARDN 179
Query: 179 DRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKI 238
DRYGKLIIEEGGVGPLLKL+KEGK EGQENAARAIGLLGRD ESVE MIH+GVC VFAK+
Sbjct: 180 DRYGKLIIEEGGVGPLLKLIKEGKKEGQENAARAIGLLGRDLESVELMIHAGVCSVFAKV 239
Query: 239 LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS-K 297
LKEGPMKVQAVVAWAVSELA YPKCQDLFAQHNI+RLLV HLAFETVQEHSKYAIVS K
Sbjct: 240 LKEGPMKVQAVVAWAVSELAAKYPKCQDLFAQHNIVRLLVSHLAFETVQEHSKYAIVSNK 299
Query: 298 ATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAM 357
TSIHAVV+A++ +N N K +DE+KQ S + HP+G+++ +QMH VVT+TMAM
Sbjct: 300 PTSIHAVVMANSNNSNGN---GARKESEDEEKQMQSRMQHPLGDRSTNQMHRVVTSTMAM 356
Query: 358 KVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKA 417
K Q+ +N G N KQ++ S G N KGRE+EDP KA
Sbjct: 357 HAANKKQQQ----VNGG----------NGKQSY--------SYSGINMKGREIEDPDNKA 394
Query: 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAE 477
YMKAMAARAL LAKGN+ ICRSITESRALLC A+LLEKG EDV YNSA+A+ EITAVAE
Sbjct: 395 YMKAMAARALRQLAKGNAAICRSITESRALLCLAILLEKGTEDVMYNSALAVKEITAVAE 454
Query: 478 KDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVP 537
KDAELRRSAFKPN+PACKAVVDQ+ +IIEK D LLIPC+KA+GNLARTF+ATETR+I P
Sbjct: 455 KDAELRRSAFKPNSPACKAVVDQVLKIIEKEDRKLLIPCVKAIGNLARTFRATETRIIGP 514
Query: 538 LVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQL 597
LV+LLDEREAEVSREA+I+LTK ACS+NYLH DHSKAIISA GAKHLVQLVY GEQ VQ+
Sbjct: 515 LVRLLDEREAEVSREAAISLTKLACSENYLHLDHSKAIISASGAKHLVQLVYLGEQTVQI 574
Query: 598 SALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQSR 657
SALVLL YIALHVPDSE+LA+AEVL VLEW SKQ ++TQD+T++ LLQD+K RLELYQSR
Sbjct: 575 SALVLLSYIALHVPDSEELARAEVLGVLEWASKQPNLTQDQTLEALLQDSKGRLELYQSR 634
Query: 658 GSRGFH 663
GSRGF
Sbjct: 635 GSRGFQ 640
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 663 | ||||||
| TAIR|locus:2156932 | 651 | ARO2 "armadillo repeat only 2" | 0.974 | 0.992 | 0.720 | 4e-241 | |
| TAIR|locus:2116850 | 664 | ARO1 "AT4G34940" [Arabidopsis | 0.986 | 0.984 | 0.679 | 1.1e-229 | |
| TAIR|locus:2135149 | 670 | ARO3 "armadillo repeat only 3" | 0.989 | 0.979 | 0.640 | 7.6e-215 | |
| TAIR|locus:2088832 | 615 | ARO4 "AT3G26600" [Arabidopsis | 0.390 | 0.421 | 0.458 | 6e-97 | |
| SGD|S000000739 | 578 | VAC8 "Phosphorylated and palmi | 0.241 | 0.276 | 0.280 | 1.7e-08 | |
| TAIR|locus:2132238 | 531 | MOS6 "MODIFIER OF SNC1, 6" [Ar | 0.165 | 0.207 | 0.256 | 3.2e-06 | |
| CGD|CAL0001835 | 585 | VAC8 [Candida albicans (taxid: | 0.241 | 0.273 | 0.302 | 4.4e-06 | |
| UNIPROTKB|Q59MN0 | 585 | VAC8 "Vacuolar protein 8" [Can | 0.241 | 0.273 | 0.302 | 4.4e-06 | |
| TAIR|locus:2056529 | 580 | AT2G05810 "AT2G05810" [Arabido | 0.220 | 0.251 | 0.278 | 0.00011 | |
| TAIR|locus:505006475 | 535 | IMPA-2 "importin alpha isoform | 0.164 | 0.203 | 0.279 | 0.00018 |
| TAIR|locus:2156932 ARO2 "armadillo repeat only 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2324 (823.1 bits), Expect = 4.0e-241, P = 4.0e-241
Identities = 480/666 (72%), Positives = 540/666 (81%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKXXXXXXXXXXXSSDLYER 60
MAD VKQILAKPIQL+DQVVKAADEA+S KQ+C ELK+KTEK S+DLYER
Sbjct: 1 MADIVKQILAKPIQLSDQVVKAADEASSFKQECGELKAKTEKLAGLLRQAARASNDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PTRRIIDDTEQ+LEKALSLV+K RANG++KRVFTIIPAAAFRKMS QLENSIGDVSWLLR
Sbjct: 61 PTRRIIDDTEQMLEKALSLVLKCRANGLMKRVFTIIPAAAFRKMSGQLENSIGDVSWLLR 120
Query: 121 VSASAEDRDDE-YLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDND 179
VSA AEDR D YLGLPPIAANEPILCLIWEQ+AILYT GSLE +SDAAASLVSLARDND
Sbjct: 121 VSAPAEDRGDAGYLGLPPIAANEPILCLIWEQIAILYT-GSLEDRSDAAASLVSLARDND 179
Query: 180 RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239
RY KLIIEEGGV PLLKL+KEGKPEGQENAARA+GLLGRDPESVEHMIH G C VF K+L
Sbjct: 180 RYTKLIIEEGGVVPLLKLLKEGKPEGQENAARALGLLGRDPESVEHMIHGGACSVFGKVL 239
Query: 240 KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS--K 297
KEGPMKVQAVVAWA SEL N+PKCQD+FAQHN IRLLVGHLAFETVQEHSKYAI + K
Sbjct: 240 KEGPMKVQAVVAWATSELVSNHPKCQDVFAQHNAIRLLVGHLAFETVQEHSKYAIATNNK 299
Query: 298 ATSIHXXXXXXXXXXXXXXXXXXXXXIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAM 357
ATSIH +D ED+ S IPHP G + P+QMHNVV NTMA+
Sbjct: 300 ATSIHHAVALAKENPNSTSATALPKGLD-EDQ---SSIPHPTGKQMPNQMHNVVVNTMAV 355
Query: 358 KVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKA 417
+ P + N ++Q VK Q ++V+Q HQ+ S+ +K RELED ATK
Sbjct: 356 RANP-PRKSTSNGVSQSNGVK---QPSSVQQ-----HQNSTSSA---SKTRELEDSATKC 403
Query: 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAE 477
+KAMAARALW LAKGNS IC+SITESRALLCFAVL+EKG E+V+YNSAMALMEITAVAE
Sbjct: 404 QIKAMAARALWKLAKGNSTICKSITESRALLCFAVLIEKGDEEVRYNSAMALMEITAVAE 463
Query: 478 KDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVP 537
+DA+LRRSAFKPN+PACKAVVDQ+ RIIE ADS+LLIPCI+ +GNLARTF+ATETRMI P
Sbjct: 464 QDADLRRSAFKPNSPACKAVVDQVLRIIEIADSELLIPCIRTIGNLARTFRATETRMIGP 523
Query: 538 LVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQL 597
LVKLLDERE EV+ EA+ ALTKFAC+ NYLH DHS+ II AGG KHLVQL YFGE VQ+
Sbjct: 524 LVKLLDEREPEVTGEAAAALTKFACTANYLHKDHSRGIIEAGGGKHLVQLAYFGEGGVQI 583
Query: 598 SALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQSR 657
AL LLCYIAL+VPDSE LA+ EVL VLEW SKQS +TQ E+++ LLQ+AK L+LYQ R
Sbjct: 584 PALELLCYIALNVPDSEQLAKDEVLAVLEWASKQSWVTQLESLEALLQEAKRGLDLYQQR 643
Query: 658 GSRGFH 663
GSRG++
Sbjct: 644 GSRGYN 649
|
|
| TAIR|locus:2116850 ARO1 "AT4G34940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2216 (785.1 bits), Expect = 1.1e-229, P = 1.1e-229
Identities = 457/673 (67%), Positives = 534/673 (79%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKXXXXXXXXXXXSSDLYER 60
MAD VKQIL +PIQLADQ+ KA+DEA S +Q+C E+K+KTEK S+DLYER
Sbjct: 1 MADIVKQILVRPIQLADQITKASDEAYSFRQECLEVKAKTEKLAGLLRQAARASNDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PTRRIIDDTEQVL KAL+LV K RA G++KRVFTIIPAAAFRK++ QLENSIGDVSWLLR
Sbjct: 61 PTRRIIDDTEQVLFKALALVEKCRATGLMKRVFTIIPAAAFRKITMQLENSIGDVSWLLR 120
Query: 121 VSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDR 180
VSAS +DRDDEYLGLPPIAANEPILCLIWEQVAIL+T GSL+ +SDAAASLVSLARDNDR
Sbjct: 121 VSASGDDRDDEYLGLPPIAANEPILCLIWEQVAILFT-GSLDDRSDAAASLVSLARDNDR 179
Query: 181 YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILK 240
YG+LIIEEGGV LLKL KEGK EGQENAARAIGLLGRDPESVE ++++GVC VFAKILK
Sbjct: 180 YGRLIIEEGGVPSLLKLAKEGKMEGQENAARAIGLLGRDPESVEQIVNAGVCQVFAKILK 239
Query: 241 EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS-KAT 299
EG MKVQ VVAWAVSELA N+PKCQD FAQ+NIIR LV HLAFETVQEHSKYAIVS K T
Sbjct: 240 EGHMKVQTVVAWAVSELASNHPKCQDHFAQNNIIRFLVSHLAFETVQEHSKYAIVSNKQT 299
Query: 300 --SIHXXXXXXXXXXXXXXXXXXXXXIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAM 357
SIH DE K S I HP+ N+TPSQMH+++ NT+AM
Sbjct: 300 LSSIHTVVMASNTNPADKKENNE----QDETK---SNISHPLSNQTPSQMHSLIANTLAM 352
Query: 358 KVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQS--QHQHG-----LSNYGANTKGREL 410
K G+ P G+ GT+ Q N QNH + G +S G + KGRE
Sbjct: 353 K-GSGPSSGSGSGSGSGTNKNQIKQSNQQHQNHTKGGSNPRGNNPTHVSLMGTSIKGREY 411
Query: 411 EDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALM 470
EDPATKA MKAMAARALW L++GN ICRSITESRALLCFAVLLEKG ++V+ SA+A+M
Sbjct: 412 EDPATKAQMKAMAARALWQLSRGNLQICRSITESRALLCFAVLLEKGDDEVKSYSALAMM 471
Query: 471 EITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT 530
EIT VAE+ ELRRSAFKP +PA KAVV+QL ++IE DLLIPCIK++G+L+RTF+AT
Sbjct: 472 EITDVAEQYPELRRSAFKPTSPAAKAVVEQLLKVIENEILDLLIPCIKSIGSLSRTFRAT 531
Query: 531 ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF 590
ETR+I PLVKLLDEREAE++ EA++AL KF+C++N+L +HSKAII+AGGAKHL+QLVYF
Sbjct: 532 ETRIIGPLVKLLDEREAEIAMEAAVALIKFSCTENFLRDNHSKAIIAAGGAKHLIQLVYF 591
Query: 591 GEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSR 650
GEQ+VQ+ AL+LLCYIAL+VPDSE LAQ EVL VLEW++KQ+H+ + T+D +L +AKSR
Sbjct: 592 GEQMVQVPALMLLCYIALNVPDSETLAQEEVLVVLEWSTKQAHLVEAPTIDEILPEAKSR 651
Query: 651 LELYQSRGSRGFH 663
LELYQSRGSRGFH
Sbjct: 652 LELYQSRGSRGFH 664
|
|
| TAIR|locus:2135149 ARO3 "armadillo repeat only 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2076 (735.8 bits), Expect = 7.6e-215, P = 7.6e-215
Identities = 433/676 (64%), Positives = 515/676 (76%)
Query: 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKXXXXXXXXXXXSSDLYER 60
M D KQIL++PIQLADQVVKA DEAT KQ+CA++KSKTEK SSDLYER
Sbjct: 1 MGDLAKQILSRPIQLADQVVKAGDEATINKQECADIKSKTEKLAALLRQAARASSDLYER 60
Query: 61 PTRRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLR 120
PTRRI+DDTE VLEKAL++V + R +G I R+F IIPAAAFRKM SQLENS+GDVSWLLR
Sbjct: 61 PTRRILDDTENVLEKALTMVQRCRDDGYIMRLFNIIPAAAFRKMISQLENSVGDVSWLLR 120
Query: 121 VSASAEDRDDE---YLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARD 177
VS A + DDE YLGLPPIAANEPILCLIWEQ+A+L T GS E KSDAAASL SLARD
Sbjct: 121 VSTPAGNDDDEGFGYLGLPPIAANEPILCLIWEQIAVLMT-GSPEDKSDAAASLASLARD 179
Query: 178 NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAK 237
NDRY KLI+EEGGV PLLKLVKEGK +GQENAAR IGLLGRDPESVEHMI GVC V +
Sbjct: 180 NDRYVKLIVEEGGVNPLLKLVKEGKIDGQENAARTIGLLGRDPESVEHMIQLGVCSVLSS 239
Query: 238 ILKEGPMKVQAVVAWAVSEL-AGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS 296
ILKEG MKVQAVVAWAVSEL +GN+ KCQ+LFAQ+N+IRLLV HLAFETVQEHSKYA+V+
Sbjct: 240 ILKEGSMKVQAVVAWAVSELVSGNHAKCQELFAQNNVIRLLVSHLAFETVQEHSKYAVVA 299
Query: 297 -KATSIHXXXXXXXXXXXXXXXXXXXXXIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTM 355
+ATS+H +D+D H + PM N QMH++V TM
Sbjct: 300 GRATSMHHAVVMASKISSSKENLPALNEEEDDDN--HIGVSSPMTN----QMHSIVATTM 353
Query: 356 AMK-VGTKPVQKQGNVINQGTDVKSNGQ--DNNVKQNHQSQHQHGLSNYGAN---TKGRE 409
AMK VG+ + G D K + + + + Q + +++ N T+GRE
Sbjct: 354 AMKAVGSGSKSNLSSRFVTGDDDKPPEKIPEKSYSMSSQIKAYGSIAHQSRNASVTRGRE 413
Query: 410 LEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMAL 469
LEDP TK YMKAMAARALW LA GNS ICR ITESRALLCFAVLL+KG E+ +YN+AMA+
Sbjct: 414 LEDPVTKTYMKAMAARALWKLAVGNSSICRVITESRALLCFAVLLDKGDEETKYNTAMAI 473
Query: 470 MEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD--SDLLIPCIKAVGNLARTF 527
MEITAVAE++A+LRRSAF+ +PACKAVVDQLFRI+E AD SDLLIPC++++GNLARTF
Sbjct: 474 MEITAVAEENADLRRSAFRRTSPACKAVVDQLFRIVENADAGSDLLIPCVRSIGNLARTF 533
Query: 528 KATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587
K+ ET MIVPLVKLLD+ E +++ E +IAL KFA DN+L +HS+ II AGG+K LVQL
Sbjct: 534 KSAETHMIVPLVKLLDDGEPDLAAEVAIALAKFATEDNFLGKEHSRTIIEAGGSKLLVQL 593
Query: 588 VYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDA 647
YFGE Q+ A+VLL Y+A++VPDSE LA+ EVLTVLEW+SKQ+++ +DE ++ LL +A
Sbjct: 594 AYFGENGAQIPAMVLLSYVAMNVPDSEQLAKDEVLTVLEWSSKQANVLEDEDMEALLYEA 653
Query: 648 KSRLELYQSRGSRGFH 663
KSRLELYQSRGSRGFH
Sbjct: 654 KSRLELYQSRGSRGFH 669
|
|
| TAIR|locus:2088832 ARO4 "AT3G26600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
Identities = 120/262 (45%), Positives = 167/262 (63%)
Query: 399 SNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP 458
S G K R+ E+P K +K A ALW LA+GN R ITE++ LL A ++EK
Sbjct: 346 SRTGNFKKERDNENPEVKHELKVNCAEALWMLARGNVANSRRITETKGLLSLAKIVEKEV 405
Query: 459 EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLL-IPCI 517
++QYN M LMEITA AE A+LRR+AFK N+PA KAV+DQ+ II+ DS +L IP I
Sbjct: 406 GELQYNCLMTLMEITAAAESSADLRRAAFKTNSPAAKAVIDQMLWIIKDVDSPILKIPAI 465
Query: 518 KAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIIS 577
+++G+LARTF A ETRMI PLV+ L EV+ A I+L KF C +N+L ++HSK II
Sbjct: 466 QSIGSLARTFPARETRMIKPLVEKLGSSNQEVAITAVISLQKFVCPENFLCAEHSKNIIE 525
Query: 578 AGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQD 637
G L++L+ EQ +QL L LLCY++++ + + L QA+VLTVLE + + + Q+
Sbjct: 526 YGAIPLLMKLIRNVEQQMQLQCLALLCYLSVNASNHQQLEQAKVLTVLEGAERLAGL-QN 584
Query: 638 ETVDPLLQDAKSRLELYQSRGS 659
+ L+ A +L LY + GS
Sbjct: 585 MELRELVSKAIYQLSLYNA-GS 605
|
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| SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 51/182 (28%), Positives = 82/182 (45%)
Query: 441 ITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQ 500
I S AL+ L + VQ N+ AL+ +T E EL NA A +V
Sbjct: 163 IATSGALIPLTKLAKSKHIRVQRNATGALLNMTHSEENRKEL------VNAGAVPVLVS- 215
Query: 501 LFRIIEKADSDLLIPCIKAVGNLA------RTFKATETRMIVPLVKLLDEREAEVSREAS 554
++ D D+ C A+ N+A + TE R++ LV L+D + V +A+
Sbjct: 216 ---LLSSTDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQAT 272
Query: 555 IALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSE 614
+AL A +Y I+ AGG HLV+L+ + L+++ + I++H P +E
Sbjct: 273 LALRNLASDTSY-----QLEIVRAGGLPHLVKLIQSDSIPLVLASVACIRNISIH-PLNE 326
Query: 615 DL 616
L
Sbjct: 327 GL 328
|
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| TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 185 IIEEGGVGPLLK-LVKEGKPEGQENAARAI-GLLGRDPESVEHMIHSGVCLVFAKILKEG 242
+++ G V ++K L ++ P+ Q AA A+ + E+ +I SG +F ++L
Sbjct: 114 VVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSA 173
Query: 243 PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKAT 299
V+ WA+ +AG+ PKC+DL + + L+ E++K +++ AT
Sbjct: 174 SEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQF-----NENTKLSMLRNAT 225
|
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| CGD|CAL0001835 VAC8 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 55/182 (30%), Positives = 87/182 (47%)
Query: 441 ITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQ 500
I +S AL+ L + VQ N+ AL+ +T E EL NA A +V
Sbjct: 165 IAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSGENRQEL------VNAGAVPVLVS- 217
Query: 501 LFRIIEKADSDLLIPCIKAVGNLA------RTFKATETRMIVPLVKLLDEREAEVSREAS 554
++ D+D+ C A+ N+A + +TE +++ LV L+D V +A+
Sbjct: 218 ---LLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQLVHLMDSPSPRVQCQAT 274
Query: 555 IALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSE 614
+AL A SD S + I+ AGG HLVQL+ Q + L+A+ + I++H P +E
Sbjct: 275 LALRNLA-SD----SGYQVEIVRAGGLPHLVQLLTCNHQPLVLAAVACIRNISIH-PLNE 328
Query: 615 DL 616
L
Sbjct: 329 AL 330
|
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| UNIPROTKB|Q59MN0 VAC8 "Vacuolar protein 8" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 55/182 (30%), Positives = 87/182 (47%)
Query: 441 ITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQ 500
I +S AL+ L + VQ N+ AL+ +T E EL NA A +V
Sbjct: 165 IAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSGENRQEL------VNAGAVPVLVS- 217
Query: 501 LFRIIEKADSDLLIPCIKAVGNLA------RTFKATETRMIVPLVKLLDEREAEVSREAS 554
++ D+D+ C A+ N+A + +TE +++ LV L+D V +A+
Sbjct: 218 ---LLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQLVHLMDSPSPRVQCQAT 274
Query: 555 IALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSE 614
+AL A SD S + I+ AGG HLVQL+ Q + L+A+ + I++H P +E
Sbjct: 275 LALRNLA-SD----SGYQVEIVRAGGLPHLVQLLTCNHQPLVLAAVACIRNISIH-PLNE 328
Query: 615 DL 616
L
Sbjct: 329 AL 330
|
|
| TAIR|locus:2056529 AT2G05810 "AT2G05810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 42/151 (27%), Positives = 70/151 (46%)
Query: 105 SSQLENSIGDVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHK 164
SS L I D+ LLR S ++ L LPP +++ + + G E K
Sbjct: 118 SSSLSTHISDLDLLLR-SGVLHQQNAIVLSLPPPTSDKDDIAFFIRDLFTRLQIGGAEFK 176
Query: 165 SDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVK-EGKPEGQENAARAIGLL-GRDPES 222
+ SL+ L DN++ ++I +EG VG L+ L+ P +E+A A+ LL +S
Sbjct: 177 KKSLESLLQLLTDNEKSARIIAKEGNVGYLVTLLDLHHHPLIREHALAAVSLLTSSSADS 236
Query: 223 VEHMIHSGVCLVFAKILKEG--PMKVQAVVA 251
+ + G ++L+ G P K +A +A
Sbjct: 237 RKTVFEQGGLGPLLRLLETGSSPFKTRAAIA 267
|
|
| TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 33/118 (27%), Positives = 59/118 (50%)
Query: 185 IIEEGGVGPLLK-LVKEGKPEGQENAARAI-GLLGRDPESVEHMIHSGVCLVFAKILKEG 242
+I+ G V ++ L +E P+ Q AA A+ + E+ + +I G +F ++L
Sbjct: 116 VIDAGVVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQ 175
Query: 243 PMKVQAVVAWAVSELAGNYPKCQDL-FAQHNIIRLLVGHLAFETVQEHSKYAIVSKAT 299
V+ WA+ +AG+ P+C+DL Q +I LL + EH+K +++ AT
Sbjct: 176 SDDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLL------SQLNEHAKLSMLRNAT 227
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | grail3.0057006801 | hypothetical protein (659 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 663 | |||
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-08 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-08 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-05 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 2e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 8e-04 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 184 LIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LLGRDPESVEHMIHSGVCLVFAKILKEG 242
+I+ GG+ L+ L+ Q AA A+ L + ++++ ++ +G ++LK
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 243 PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSI 301
+V WA+ LA + + + + LV + + S I AT
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN------LLDSSNEDIQKNATGA 114
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An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD 219
+ +AA +L +L+ N+ + ++E GG+ L++L+K E + A A+ L
Sbjct: 20 DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79
Query: 220 PESVEH-MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
PE + ++ +G +L +Q A+S LA
Sbjct: 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 537 PLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQ 596
LV LL + V REA+ AL+ + +N D+ +A++ AGG LVQL+ ++ V
Sbjct: 11 ALVSLLSSSDENVQREAAWALSNLSAGNN----DNIQAVVEAGGLPALVQLLKSEDEEVV 66
Query: 597 LSALVLLCYIALHVPDS-EDLAQAEVLTVL 625
+AL L +A D+ + +A + L
Sbjct: 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKL 96
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 170 SLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR----DPESVEH 225
+L +L D + +E GGV L+KL+ G + Q NAA LL R S+
Sbjct: 170 ALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAA---SLLARLMMAFESSISK 226
Query: 226 MIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279
++ +G K+L +G + V+A A A+ L+ + + A I L+
Sbjct: 227 VLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV-----PLVKLLDEREAEVSR 551
+ L ++ +D ++ A+ NL+ ++ LV+LL + EV +
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67
Query: 552 EASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587
A AL A D+ ++ AGG LV L
Sbjct: 68 AALWALRNLAAG----PEDNKLIVLEAGGVPKLVNL 99
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 663 | |||
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 100.0 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.94 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.94 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.93 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.9 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.8 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.75 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.58 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.45 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.44 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.38 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.33 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.26 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.23 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.2 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.19 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.12 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.11 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.04 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.04 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.91 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 98.89 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 98.84 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.59 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.54 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.45 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.43 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.4 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.34 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.3 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.28 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.24 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.21 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.16 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.14 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.01 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.94 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.92 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.9 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.79 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.76 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 97.74 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.73 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.7 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 97.63 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.61 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.6 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.6 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.6 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.51 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.47 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.38 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.24 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.11 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.1 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 96.98 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.88 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.84 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 96.82 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.69 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.63 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 96.55 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 96.46 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.35 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.22 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.19 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 96.13 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.12 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 96.0 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.83 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 95.67 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 95.63 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 95.47 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.33 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.06 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 94.98 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 94.48 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.37 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 94.36 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.34 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 94.14 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 94.01 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 93.85 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 93.38 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 93.32 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 93.28 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 92.49 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 92.28 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 92.26 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 92.03 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 91.84 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 91.53 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 91.47 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 91.26 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 91.18 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 90.8 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 90.23 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 90.06 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 89.93 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 89.72 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 89.5 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 89.13 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 87.24 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 87.2 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 86.86 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 86.62 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 86.61 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 85.92 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 85.63 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 85.54 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 85.14 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 85.12 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 85.07 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 85.03 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 84.76 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 84.51 | |
| PF05659 | 147 | RPW8: Arabidopsis broad-spectrum mildew resistance | 84.48 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 84.19 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 83.22 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 81.74 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 81.14 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 80.22 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 80.22 |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=365.17 Aligned_cols=400 Identities=19% Similarity=0.270 Sum_probs=312.4
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcchHHH
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSLAR-DNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESVEHM 226 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~~~i 226 (663)
..+..+.+ ++...+..|..+++.|.+ ........++..|.||.||.+|+.+ ++..|.+|||||.|+|. +.+....+
T Consensus 70 ~~~~~~~S-~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 70 LMLAALYS-DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 34777788 888888888887777654 2223455666679999999999866 49999999999999995 78999999
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
+++|+||.|+++|.+++.+++++|+|||+|+|++++.+|+.+...|+++||+.++..... ..-++.+.|
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-----------~~~lRn~tW 217 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-----------LSMLRNATW 217 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-----------hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976531 013456677
Q ss_pred hhcccCc-cccCCCCCccccchhhhcccCCCCCCCCC-CCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCc
Q 037612 307 ASNKTNN-ANANGSNNKVIDDEDKQYHSLIPHPMGNK-TPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDN 384 (663)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~ 384 (663)
+.++.|+ ++|.++.- .+ ++.+ |.-.+ ..+.+.+|+.+|+|+.. |.++|.++
T Consensus 218 ~LsNlcrgk~P~P~~~-~v-------~~iL--p~L~~ll~~~D~~Vl~Da~WAls-----------------yLsdg~ne 270 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFD-VV-------APIL--PALLRLLHSTDEEVLTDACWALS-----------------YLTDGSNE 270 (514)
T ss_pred HHHHHHcCCCCCCcHH-HH-------HHHH--HHHHHHHhcCCHHHHHHHHHHHH-----------------HHhcCChH
Confidence 7777665 23322211 01 0000 11111 34457789999999873 67777654
Q ss_pred cccccccccccccccccCCcCCC---CccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-cCChh
Q 037612 385 NVKQNHQSQHQHGLSNYGANTKG---RELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-KGPED 460 (663)
Q Consensus 385 ~~~~~~~~~~~~~~~~~g~~~~~---re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-~~~~~ 460 (663)
.+ +.+...|..++. ....++ +.+.+|.++++|+++|++.++..+...|+++||..||. +....
T Consensus 271 ~i---------q~vi~~gvv~~LV~lL~~~~~----~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ 337 (514)
T KOG0166|consen 271 KI---------QMVIDAGVVPRLVDLLGHSSP----KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKES 337 (514)
T ss_pred HH---------HHHHHccchHHHHHHHcCCCc----ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchh
Confidence 33 334555665555 222222 35789999999999999999999999999999999999 55667
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVK 540 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~ 540 (663)
++++|||+|+||++++. +|+..++. ++.+|+|++
T Consensus 338 ikkEAcW~iSNItAG~~---------------------~qiqaVid-------------------------a~l~p~Li~ 371 (514)
T KOG0166|consen 338 IKKEACWTISNITAGNQ---------------------EQIQAVID-------------------------ANLIPVLIN 371 (514)
T ss_pred HHHHHHHHHHHhhcCCH---------------------HHHHHHHH-------------------------cccHHHHHH
Confidence 99999999999998753 34444553 589999999
Q ss_pred hcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC--------
Q 037612 541 LLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD-------- 612 (663)
Q Consensus 541 LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~-------- 612 (663)
+|+.+++++++||+||++|++++++ +++.+++++.|.|+|||.||...|..+...++.+|.|+- .+++
T Consensus 372 ~l~~~ef~~rKEAawaIsN~ts~g~---~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil-~~~e~~~~~~~n 447 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLTSSGT---PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENIL-KVGEAEKNRGTN 447 (514)
T ss_pred HHhccchHHHHHHHHHHHhhcccCC---HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHH-HHHHHhcccccc
Confidence 9999999999999999999999986 689999999999999999999998888667999998883 3322
Q ss_pred --hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhhcC
Q 037612 613 --SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQSRG 658 (663)
Q Consensus 613 --~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~~~ 658 (663)
...|+++|+ .+..+.+|.|.++++|.+|..+++.|++..
T Consensus 448 ~~~~~IEe~gg-------ldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 448 PLAIMIEEAGG-------LDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHccC-------hhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 223444444 444567899999999999999999999843
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=340.25 Aligned_cols=410 Identities=20% Similarity=0.274 Sum_probs=310.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHh-hcCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcchHHH
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSL-ARDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESVEHM 226 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~L-a~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~~~i 226 (663)
++..-|.+ .+.|.+..|......+ ++++....+.++++|+||.+|++|++. ..-.|.+|+|||.|++. .......+
T Consensus 75 ~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 75 QLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 34667788 8999999998888775 444445688889999999999999654 57799999999999996 56677788
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
|++|+||.|+++|.++..+|++++.|||+|+|++++.+|+.+.+.|++.||+.||.+... | ..-++...|
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~--~--------ismlRn~TW 223 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI--H--------ISMLRNATW 223 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc--h--------HHHHHHhHH
Confidence 899999999999999999999999999999999999999999999999999999975421 1 112344455
Q ss_pred hhcccCc-cccCCCCCccccchhhhcccCCCCCCCCC-CCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCc
Q 037612 307 ASNKTNN-ANANGSNNKVIDDEDKQYHSLIPHPMGNK-TPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDN 384 (663)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~ 384 (663)
+.++.|+ +||.++-. .+. ..+ |+... .-....+++.+++|+.+ |.++|..+
T Consensus 224 tLSNlcRGknP~P~w~-~is-------qal--piL~KLiys~D~evlvDA~WAiS-----------------YlsDg~~E 276 (526)
T COG5064 224 TLSNLCRGKNPPPDWS-NIS-------QAL--PILAKLIYSRDPEVLVDACWAIS-----------------YLSDGPNE 276 (526)
T ss_pred HHHHhhCCCCCCCchH-HHH-------HHH--HHHHHHHhhcCHHHHHHHHHHHH-----------------HhccCcHH
Confidence 5555554 22221111 000 000 11000 11235588999999874 67777643
Q ss_pred cccccccccccccccccCCcCCCCcc-CChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH
Q 037612 385 NVKQNHQSQHQHGLSNYGANTKGREL-EDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY 463 (663)
Q Consensus 385 ~~~~~~~~~~~~~~~~~g~~~~~re~-~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~ 463 (663)
.+. .+-..|+..|.-|. ..|. .+.+.+|.++++|+.+|++.++..|...|++..|..||++....+++
T Consensus 277 ~i~---------avld~g~~~RLvElLs~~s--a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 277 KIQ---------AVLDVGIPGRLVELLSHES--AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred HHH---------HHHhcCCcHHHHHHhcCcc--ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence 222 23334554444221 1222 35699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcc
Q 037612 464 NSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLD 543 (663)
Q Consensus 464 ~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~ 543 (663)
++||+|+||+++.. +|+..+|+ .+.|||||++|+
T Consensus 346 EaCWTiSNITAGnt---------------------eqiqavid-------------------------~nliPpLi~lls 379 (526)
T COG5064 346 EACWTISNITAGNT---------------------EQIQAVID-------------------------ANLIPPLIHLLS 379 (526)
T ss_pred hhheeecccccCCH---------------------HHHHHHHh-------------------------cccchHHHHHHH
Confidence 99999999998753 34444443 579999999999
Q ss_pred cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchh
Q 037612 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLT 623 (663)
Q Consensus 544 ~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~ 623 (663)
..+..+++||+||++|..++++. .++..+++++.|.|+|||.||...+-++-..++.++.|+ +++++..+...-.-+.
T Consensus 380 ~ae~k~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni-Lk~Ge~d~~~~~~nin 457 (526)
T COG5064 380 SAEYKIKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI-LKVGEQDRLRYGKNIN 457 (526)
T ss_pred HHHHHHHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHH-HhhhhHHHHhccCCcc
Confidence 99999999999999999988875 679999999999999999999988776655589999888 6666543322211111
Q ss_pred ---hhhh---ccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 624 ---VLEW---TSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 624 ---~L~~---~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
+... +.+.++-.|+..++.+|.||.+++|.|+.
T Consensus 458 ~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 458 IYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred HHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence 1100 44455677888999999999999999995
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=371.80 Aligned_cols=429 Identities=20% Similarity=0.200 Sum_probs=336.5
Q ss_pred HHHHHHHHHHHHHhhhcCcccccceecccccHHHHHHHHHhh-----hcchHHHHhhccccCCCCc--cccCCCCcccch
Q 037612 70 EQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENS-----IGDVSWLLRVSASAEDRDD--EYLGLPPIAANE 142 (663)
Q Consensus 70 ~~tl~~a~~l~~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~~-----~~~~~~ll~~s~~~~~~~~--~~~~~p~ia~~~ 142 (663)
.+..+++...++.-.+.+...|.+..-..|.+|.|++.|.+. ...+..++++|...+++.. ..+.+||+
T Consensus 29 ~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppL---- 104 (2102)
T PLN03200 29 PQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPL---- 104 (2102)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH----
Confidence 355566666777777777776766543588999999999532 1236678888877655432 24456666
Q ss_pred hhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCC--hhhH-HHHHhcCChHHHHHhhccCC---hHHHHHHHHHHHHh
Q 037612 143 PILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDN--DRYG-KLIIEEGGVGPLLKLVKEGK---PEGQENAARAIGLL 216 (663)
Q Consensus 143 ~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~--~~~~-~~Ive~G~Ip~Lv~LL~sg~---~~~q~~Aa~AL~nL 216 (663)
+.+|+. |+.+.|++||++|++|+.++ |.++ .++++.|+||+|+.+|++|+ ..+++.|+.+|+||
T Consensus 105 ---------V~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 105 ---------LSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred ---------HHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 889999 99999999999999999875 6666 45568999999999999984 34678889999999
Q ss_pred cCCCcchH-HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHh
Q 037612 217 GRDPESVE-HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIV 295 (663)
Q Consensus 217 s~~~~~~~-~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~ 295 (663)
+.+++++. .++++|+||.|+++|+++++..|..|+++|.+++.++++.+..+.+.|+||+||++|++++
T Consensus 175 s~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~---------- 244 (2102)
T PLN03200 175 CGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN---------- 244 (2102)
T ss_pred hcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC----------
Confidence 99888875 5689999999999999999999999999999999877889999999999999999997652
Q ss_pred hhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCc
Q 037612 296 SKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGT 375 (663)
Q Consensus 296 ~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~ 375 (663)
T Consensus 245 -------------------------------------------------------------------------------- 244 (2102)
T PLN03200 245 -------------------------------------------------------------------------------- 244 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh
Q 037612 376 DVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE 455 (663)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~ 455 (663)
+ ..+|+.|++||++|+.++.++.+.|.+.||+++|+.++.
T Consensus 245 ------------------------------------~----~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~ 284 (2102)
T PLN03200 245 ------------------------------------E----VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATV 284 (2102)
T ss_pred ------------------------------------C----hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 0 024888999999999999999999999999999999998
Q ss_pred cCCh---------hHHHHHHHHHHHHhhhhhc-----------c--H---------------------HHHhhhcCC---
Q 037612 456 KGPE---------DVQYNSAMALMEITAVAEK-----------D--A---------------------ELRRSAFKP--- 489 (663)
Q Consensus 456 ~~~~---------~vq~~aa~AL~~i~a~a~~-----------~--~---------------------~~rr~a~~~--- 489 (663)
.... .+|++|+|||.|||.+-.. . . +..+ +|.+
T Consensus 285 sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~-~i~~~~v 363 (2102)
T PLN03200 285 APSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTR-AFDPTVI 363 (2102)
T ss_pred CcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhh-hcccccc
Confidence 6553 4599999999999874211 0 0 0000 1111
Q ss_pred ----------CCchh-H-----------------------hHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----H
Q 037612 490 ----------NAPAC-K-----------------------AVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----T 530 (663)
Q Consensus 490 ----------~~~a~-~-----------------------~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~ 530 (663)
..|.. + .+++.|+.|+...+.+++..++.+|++|+..-.. .
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 10110 1 1345677888888899999999999999965222 2
Q ss_pred hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 531 ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 531 e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
+.++||+||++|.+.+..+++.|+|+|++++.+. .++...|+++|||++|++||+++++.+|..|+++|+|++.+.
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n----denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~ 519 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEV----DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS 519 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc
Confidence 4678999999999999999999999999998543 467779999999999999999999999999999999999887
Q ss_pred CChHH-HHhccchhhhhhccccccccccCCcHHHHHHHHHHH
Q 037612 611 PDSED-LAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651 (663)
Q Consensus 611 ~~~~~-i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~l 651 (663)
++... +.++|+++.|.+-.+.. ++..+.-+..++..|
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKL 557 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHH
Confidence 66555 55889999987543322 234445556665555
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=343.58 Aligned_cols=436 Identities=17% Similarity=0.151 Sum_probs=312.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv 227 (663)
+.+|.+|+. ++.+.|.+++++|.+|+.+++++++.|++.|+||+|+++|++++...|+.|+++|.||+. +++++..|+
T Consensus 407 k~LV~LL~~-~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIi 485 (2102)
T PLN03200 407 KVLVGLITM-ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAIT 485 (2102)
T ss_pred hhhhhhhcc-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346888999 999999999999999998889999999999999999999999999999999999999995 667899999
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
++|+||+|+++|++++.++|++|+|+|+||+.+++++|..+.++|+||+|+++|++|+.+.. +.+.+ .|..+...
T Consensus 486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q-~~Aa~----AL~nLi~~ 560 (2102)
T PLN03200 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQ-EIAAK----TLTKLVRT 560 (2102)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH-HHHHH----HHHHHHhc
Confidence 99999999999999999999999999999999888899999999999999999999864221 11111 22222110
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
. +...+ .+ +..-+....++-...++..-..+.. +........++.. ..+|.
T Consensus 561 ~-----------d~~~I-------~~-Lv~LLlsdd~~~~~~aL~vLgnIls----l~~~~d~~~~g~~-~~ggL----- 611 (2102)
T PLN03200 561 A-----------DAATI-------SQ-LTALLLGDLPESKVHVLDVLGHVLS----VASLEDLVREGSA-ANDAL----- 611 (2102)
T ss_pred c-----------chhHH-------HH-HHHHhcCCChhHHHHHHHHHHHHHh----hcchhHHHHHhhh-ccccH-----
Confidence 0 00000 00 0000000000000111110000000 0000000000000 01121
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
+.. ....+.+++ ..|..|+++|++++.++.++|..+...|++++|+.||++++.++++++||
T Consensus 612 -----~~L---------v~LL~sgs~----~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 612 -----RTL---------IQLLSSSKE----ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred -----HHH---------HHHHcCCCH----HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence 000 011222333 46999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH----hhccHHHHHHhcc
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT----ETRMIVPLVKLLD 543 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~ 543 (663)
||.+++.... .+.+.. + ...++|++|++++++.++++...|..+|++++...... +.++|+|||++|+
T Consensus 674 AL~nL~~~~~--~~q~~~-~-----v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr 745 (2102)
T PLN03200 674 ALAALSRSIK--ENRKVS-Y-----AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR 745 (2102)
T ss_pred HHHHHHhCCC--HHHHHH-H-----HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH
Confidence 9999986432 232221 1 12568999999999999999999999999999977553 3578999999999
Q ss_pred cCCHHHHHHHHHHHHhcccCCCCCChhh-H-HHHHHcCCHHHHHHHHhcCChhH--HHHHHHHHHHHhcCCCC-------
Q 037612 544 EREAEVSREASIALTKFACSDNYLHSDH-S-KAIISAGGAKHLVQLVYFGEQIV--QLSALVLLCYIALHVPD------- 612 (663)
Q Consensus 544 ~~~~~v~~eAa~AL~~la~~~~~~~~~~-~-~~Iv~~ggi~~Lv~LL~~~~~~~--q~~Al~~L~~la~~~~~------- 612 (663)
+++++++++|+|||.+++.... .++ . ..+...|.+.||+.+|...+... -..|+..|.+++.....
T Consensus 746 ~G~~~~k~~Aa~AL~~L~~~~~---~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~ 822 (2102)
T PLN03200 746 EGTLEGKRNAARALAQLLKHFP---VDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPP 822 (2102)
T ss_pred hCChHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCc
Confidence 9999999999999999986652 333 2 57899999999999999875544 23599999999853211
Q ss_pred -hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhh
Q 037612 613 -SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQ 655 (663)
Q Consensus 613 -~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~ 655 (663)
..-++..+.+..|.. -+ .+....++.||+.+|+.+=
T Consensus 823 ~~~~~e~p~~l~~l~~------~l-~~~~p~~~~kai~il~~~~ 859 (2102)
T PLN03200 823 WAVLAEVPSSLEPLVR------CL-AEGHPLVQDKAIEILSRLC 859 (2102)
T ss_pred hhhHHhccCchHHHHH------HH-HcCChHHHHHHHHHHHHHh
Confidence 222333455555531 12 3466678888888887653
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=237.12 Aligned_cols=337 Identities=19% Similarity=0.261 Sum_probs=274.6
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCc
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGV 231 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGa 231 (663)
...|++ .+...+..|..+++|+|.. -+|+-.|++.+|+.+|+.-+-++..+.|.+|+.+|+||+..++||..|...|+
T Consensus 91 l~llqs-~d~~Iq~aa~~alGnlAVn-~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGa 168 (550)
T KOG4224|consen 91 LALLQS-CDKCIQCAAGEALGNLAVN-MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGA 168 (550)
T ss_pred HHHHhC-cchhhhhhhhhhhccceec-cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccc
Confidence 456778 8888889999999999975 66899999999999999999888899999999999999999999999999999
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhccc
Q 037612 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKT 311 (663)
Q Consensus 232 Ip~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~ 311 (663)
+.||+++-++.+..+|.++.++|.||+. +.++|..++..|++|.||+++.+|.. +
T Consensus 169 L~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~--d---------------------- 223 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDL--D---------------------- 223 (550)
T ss_pred hhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCCh--h----------------------
Confidence 9999998889999999999999999995 67999999999999999999987731 0
Q ss_pred CccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccc
Q 037612 312 NNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQ 391 (663)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~ 391 (663)
T Consensus 224 -------------------------------------------------------------------------------- 223 (550)
T KOG4224|consen 224 -------------------------------------------------------------------------------- 223 (550)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhc--cHHHHHHHhhcCChhHHHHHHHHH
Q 037612 392 SQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESR--ALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 392 ~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esg--al~~L~~LL~~~~~~vq~~aa~AL 469 (663)
.|..|..|+.+++. ...+.+...+++ -++.|+.|++++++.+|-.|..||
T Consensus 224 ---------------------------vqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL 275 (550)
T KOG4224|consen 224 ---------------------------VQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL 275 (550)
T ss_pred ---------------------------HHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 13344445555554 234444445544 899999999999999999999999
Q ss_pred HHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh----HhhccHHHHHHhcccC
Q 037612 470 MEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA----TETRMIVPLVKLLDER 545 (663)
Q Consensus 470 ~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~----~e~~~I~pLV~LL~~~ 545 (663)
.+|++..+...++-++ +.++.++++++++...+...-+-.|-|++-..-+ .++|.+.|||++|+-+
T Consensus 276 rnlasdt~Yq~eiv~a----------g~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~ 345 (550)
T KOG4224|consen 276 RNLASDTEYQREIVEA----------GSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG 345 (550)
T ss_pred hhhcccchhhhHHHhc----------CCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC
Confidence 9999888776666653 5678899999876633333333444455543322 4678899999999977
Q ss_pred CHH-HHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhh
Q 037612 546 EAE-VSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTV 624 (663)
Q Consensus 546 ~~~-v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~ 624 (663)
+.+ ++..|.-.|.|+|..- ..+.+.|.+.|+|+.|+.|+..+...+|..--.++..++.+..+.+.+...|++++
T Consensus 346 dnEeiqchAvstLrnLAass----e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~i 421 (550)
T KOG4224|consen 346 DNEEIQCHAVSTLRNLAASS----EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPI 421 (550)
T ss_pred CchhhhhhHHHHHHHHhhhh----hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcce
Confidence 666 9999999999998542 23467899999999999999998877888866778889999999999999999999
Q ss_pred h-hhcccccccccc
Q 037612 625 L-EWTSKQSHMTQD 637 (663)
Q Consensus 625 L-~~~~~~~~~~q~ 637 (663)
| +|...+.+-.+.
T Consensus 422 LIp~t~s~s~Ev~g 435 (550)
T KOG4224|consen 422 LIPWTGSESEEVRG 435 (550)
T ss_pred eecccCccchhhcc
Confidence 8 776665554444
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=235.54 Aligned_cols=318 Identities=23% Similarity=0.276 Sum_probs=271.1
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCc
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGV 231 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGa 231 (663)
+..+.+ ...+.+.+|..+|.||+.- +.||..|...|++.||.+|-++.+...|.+|..+|.||....+|++.+|.+|+
T Consensus 132 i~qmmt-d~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 132 ILQMMT-DGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGG 209 (550)
T ss_pred HHHhcC-CCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence 444556 6789999999999999987 77999999999999999998898999999999999999999999999999999
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCC--cHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhc
Q 037612 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHN--IIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASN 309 (663)
Q Consensus 232 Ip~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g--~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~ 309 (663)
+|.||.+|+++++++|..+..+++|++- +...|..+++.+ .||.||.|+++|.
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s------------------------ 264 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGS------------------------ 264 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCC------------------------
Confidence 9999999999999999999999999996 578899999988 9999999997552
Q ss_pred ccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccc
Q 037612 310 KTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQN 389 (663)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~ 389 (663)
T Consensus 265 -------------------------------------------------------------------------------- 264 (550)
T KOG4224|consen 265 -------------------------------------------------------------------------------- 264 (550)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHH
Q 037612 390 HQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL 469 (663)
.+.|..|+.||.+|+. ....+.+|+++|++|.+++||++.-...--....++
T Consensus 265 ---------------------------~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCI 316 (550)
T KOG4224|consen 265 ---------------------------DKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACI 316 (550)
T ss_pred ---------------------------hHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHH
Confidence 1347788999999997 567889999999999999999998887777888888
Q ss_pred HHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhh-----HhhccHHHHHHhcc
Q 037612 470 MEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKA-----TETRMIVPLVKLLD 543 (663)
Q Consensus 470 ~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~-----~e~~~I~pLV~LL~ 543 (663)
.||+- .+-|..+ .+-.+...+|+++++-+| ++.|..+...|++||.+... .+.|.||.|..|+.
T Consensus 317 rnisi-hplNe~l---------I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 317 RNISI-HPLNEVL---------IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred hhccc-ccCcccc---------eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh
Confidence 88852 2222111 122456678999999888 66999999999999985443 36789999999999
Q ss_pred cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhc
Q 037612 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQA 619 (663)
Q Consensus 544 ~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~ 619 (663)
++.-.++.|-..+++-++-.++ .-.++.+.|-++.|+.++.+.++.++-+|+.+|.|++.++.+-..+.++
T Consensus 387 D~pvsvqseisac~a~Lal~d~-----~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 387 DGPVSVQSEISACIAQLALNDN-----DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred cCChhHHHHHHHHHHHHHhccc-----cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence 9999999998888888875543 2457999999999999999888888999999999999998886655544
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=238.80 Aligned_cols=333 Identities=18% Similarity=0.252 Sum_probs=256.8
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHhcCCC--cchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 191 VGPLLKLVKEGKPEGQENAARAIGLLGRDP--ESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 191 Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~--~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
.+..+..+.|++...|..|..++..|-... .....++..|.||.||+.|.. .++.+|..|||||.|+|....+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 788999999999888999999998887533 345566667999999999975 45999999999999999988777788
Q ss_pred HHhCCcHHHHHHHhccCcc--chhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCc
Q 037612 268 FAQHNIIRLLVGHLAFETV--QEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPS 345 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~--~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~ 345 (663)
+++.|++|.++.||.+... ++..-| +..+.. + ...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavW--------------ALgNIa---------------------------g--ds~ 184 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVW--------------ALGNIA---------------------------G--DSP 184 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHH--------------HHhccc---------------------------c--CCh
Confidence 9999999999999997742 332222 211100 0 011
Q ss_pred cchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHH
Q 037612 346 QMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAAR 425 (663)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~ 425 (663)
+..+.|.+.+++. |+...+.. .++ ..+...+++
T Consensus 185 ~~Rd~vl~~g~l~----------------------------------pLl~~l~~----------~~~---~~~lRn~tW 217 (514)
T KOG0166|consen 185 DCRDYVLSCGALD----------------------------------PLLRLLNK----------SDK---LSMLRNATW 217 (514)
T ss_pred HHHHHHHhhcchH----------------------------------HHHHHhcc----------ccc---hHHHHHHHH
Confidence 2333443333322 11111110 111 358999999
Q ss_pred HHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh
Q 037612 426 ALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII 505 (663)
Q Consensus 426 AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll 505 (663)
+|.||++|..........+.+++.|.+||.+.|++|..+++|||++++++.......-- --++++.|+.++
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi---------~~gvv~~LV~lL 288 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI---------DAGVVPRLVDLL 288 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH---------HccchHHHHHHH
Confidence 99999999865666667788999999999999999999999999999977643322111 136889999999
Q ss_pred hhcCcchhhHHHHHHHHhhhchhh-----HhhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcC
Q 037612 506 EKADSDLLIPCIKAVGNLARTFKA-----TETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSKAIISAG 579 (663)
Q Consensus 506 ~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~g 579 (663)
.+.++.++.||.+++||+++.... ...+.+|.|-.+|. +.+..+++||+|+++|++.+ + .+|..+++++|
T Consensus 289 ~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG-~---~~qiqaVida~ 364 (514)
T KOG0166|consen 289 GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG-N---QEQIQAVIDAN 364 (514)
T ss_pred cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC-C---HHHHHHHHHcc
Confidence 999999999999999999875443 34688999999998 55666999999999999864 3 68999999999
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC-C-hHHHHhccchhhhh
Q 037612 580 GAKHLVQLVYFGEQIVQLSALVLLCYIALHVP-D-SEDLAQAEVLTVLE 626 (663)
Q Consensus 580 gi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~-~-~~~i~~~~vl~~L~ 626 (663)
-+|.|+.+|..++-..|..|+++++|++.... + -.-|++.|+++.|-
T Consensus 365 l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plc 413 (514)
T KOG0166|consen 365 LIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLC 413 (514)
T ss_pred cHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhh
Confidence 99999999999999899999999999974443 3 24488999999986
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-23 Score=212.22 Aligned_cols=335 Identities=16% Similarity=0.193 Sum_probs=251.6
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcC--CCcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHH
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGR--DPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQD 266 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~--~~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~ 266 (663)
-+|.|..-|-|++.+.|-.|..-...+-. +..-...++++|+||.||+++.+ ...-.|-.|||+|.|+|+.....-.
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 46889998999888888888777666553 44557889999999999999954 4556778899999999986544446
Q ss_pred HHHhCCcHHHHHHHhccCcc--chhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCC
Q 037612 267 LFAQHNIIRLLVGHLAFETV--QEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTP 344 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~--~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 344 (663)
.+++.|++|.++.||.++.. .+.+ ||+..+.. + ..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQa--------------vWALGNiA------G-----------------------DS 188 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQA--------------VWALGNIA------G-----------------------DS 188 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHH--------------HHHhcccc------C-----------------------Cc
Confidence 77899999999999987742 2322 33322211 0 01
Q ss_pred ccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHH
Q 037612 345 SQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAA 424 (663)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa 424 (663)
..|...|..++++. |+.-.+- ...++ ..|.+.+.
T Consensus 189 ~~~RD~vL~~gale----------------------------------plL~ll~----------ss~~~--ismlRn~T 222 (526)
T COG5064 189 EGCRDYVLQCGALE----------------------------------PLLGLLL----------SSAIH--ISMLRNAT 222 (526)
T ss_pred hhHHHHHHhcCchH----------------------------------HHHHHHH----------hccch--HHHHHHhH
Confidence 12333333333222 1110000 11222 36899999
Q ss_pred HHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHH
Q 037612 425 RALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRI 504 (663)
Q Consensus 425 ~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~l 504 (663)
++|.||++|.-..-..-.-+.+++.|.+|+.+.++++-..|+|||++|+.++.+..+ +.+.. +....|+++
T Consensus 223 WtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~---avld~------g~~~RLvEl 293 (526)
T COG5064 223 WTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQ---AVLDV------GIPGRLVEL 293 (526)
T ss_pred HHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHH---HHHhc------CCcHHHHHH
Confidence 999999999766666667788999999999999999999999999999988754322 11221 233569999
Q ss_pred hhhcCcchhhHHHHHHHHhhhchhhH-----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcC
Q 037612 505 IEKADSDLLIPCIKAVGNLARTFKAT-----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAG 579 (663)
Q Consensus 505 l~~~~~~l~~~a~~aLg~La~~~~~~-----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~g 579 (663)
+.+++..++.|+++++||+.+..... ..|.++.+-.+|++..+.+++||+|.++|++.+. .+|..++++++
T Consensus 294 Ls~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn----teqiqavid~n 369 (526)
T COG5064 294 LSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN----TEQIQAVIDAN 369 (526)
T ss_pred hcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC----HHHHHHHHhcc
Confidence 99999999999999999998754432 3577888999999999999999999999997653 69999999999
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCCh----HHHHhccchhhhh
Q 037612 580 GAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDS----EDLAQAEVLTVLE 626 (663)
Q Consensus 580 gi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~----~~i~~~~vl~~L~ 626 (663)
-||||+.||.+-+-+++..|.|++.|...+..++ .-++..|++..|.
T Consensus 370 liPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc 420 (526)
T COG5064 370 LIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC 420 (526)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence 9999999999999889999999999987555443 3467788888875
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-16 Score=183.22 Aligned_cols=344 Identities=20% Similarity=0.235 Sum_probs=264.1
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcC
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSG 230 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG 230 (663)
|+..|+. ++.+....+...|..|+-. .+|+..+.+.|+||+|++++.+++...+..|.+.|+|||.+++.+..|++.|
T Consensus 295 Lv~~Ldr-~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~G 372 (708)
T PF05804_consen 295 LVKCLDR-ENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLG 372 (708)
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCC
Confidence 5888999 9999999999999999875 6799999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcc
Q 037612 231 VCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNK 310 (663)
Q Consensus 231 aIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~ 310 (663)
.||.|+.+|.++ ..+..+...|.+|+. ++++|..|...++||.|+.+|-++...
T Consensus 373 lIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~----------------------- 426 (708)
T PF05804_consen 373 LIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEE----------------------- 426 (708)
T ss_pred CcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCc-----------------------
Confidence 999999999865 456778899999997 579999999999999999987533100
Q ss_pred cCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccc
Q 037612 311 TNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNH 390 (663)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~ 390 (663)
T Consensus 427 -------------------------------------------------------------------------------- 426 (708)
T PF05804_consen 427 -------------------------------------------------------------------------------- 426 (708)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHH
Q 037612 391 QSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALM 470 (663)
Q Consensus 391 ~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~ 470 (663)
+.+..+...+.|||. +..|+..+.+.++++.|++..-+....+-. ..|.
T Consensus 427 ---------------------------~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl---KlIR 475 (708)
T PF05804_consen 427 ---------------------------EVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPLLL---KLIR 475 (708)
T ss_pred ---------------------------cccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHHHH---HHHH
Confidence 001123456677886 779999999999999999776655543322 3555
Q ss_pred HHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhc-hh----hHhhccHHHHHHhcc-
Q 037612 471 EITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLART-FK----ATETRMIVPLVKLLD- 543 (663)
Q Consensus 471 ~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~-~~----~~e~~~I~pLV~LL~- 543 (663)
||+. ++...+. .|.+ .|..|++++..++ +++...|+..|+||.-. +. -.+.+.+|-|.++|.
T Consensus 476 NiS~---h~~~~k~-~f~~-------~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~ 544 (708)
T PF05804_consen 476 NISQ---HDGPLKE-LFVD-------FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP 544 (708)
T ss_pred HHHh---cCchHHH-HHHH-------HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC
Confidence 6643 3323332 3432 5677888888765 78999999999999743 11 134578999999995
Q ss_pred -cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCChHHHHh-c
Q 037612 544 -EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG--EQIVQLSALVLLCYIALHVPDSEDLAQ-A 619 (663)
Q Consensus 544 -~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~--~~~~q~~Al~~L~~la~~~~~~~~i~~-~ 619 (663)
..++++.-|++..++++++++ +-+..+++.|-++.|+.||... |...+..-+.+...+..|...++.|.+ .
T Consensus 545 g~~~dDl~LE~Vi~~gtla~d~-----~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~ 619 (708)
T PF05804_consen 545 GASEDDLLLEVVILLGTLASDP-----ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKET 619 (708)
T ss_pred CCCChHHHHHHHHHHHHHHCCH-----HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhcc
Confidence 446789999999999998764 3456788999999999999876 344566677788888899888888755 4
Q ss_pred cchhhhhhccccccccccC--CcHHHHHHHHHHHHhhh
Q 037612 620 EVLTVLEWTSKQSHMTQDE--TVDPLLQDAKSRLELYQ 655 (663)
Q Consensus 620 ~vl~~L~~~~~~~~~~q~~--~~~~l~~~a~~~le~~~ 655 (663)
++..-|. ..+++. .++.....++-++..|.
T Consensus 620 ~~~~yli------dL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 620 EIPAYLI------DLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred chHHHHH------HHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 5555554 233332 56666666666665554
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-16 Score=177.57 Aligned_cols=308 Identities=19% Similarity=0.178 Sum_probs=237.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChh
Q 037612 166 DAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMK 245 (663)
Q Consensus 166 ~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~ 245 (663)
-+...|.|||.+ +.+...+.+.|+|++|+++|++++.+....+++.|.+||.+.+|+..|.+.|+|++|++++.+++.+
T Consensus 268 v~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 268 VAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 344569999975 7788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCcccc
Q 037612 246 VQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVID 325 (663)
Q Consensus 246 vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~ 325 (663)
++..+.+.|.||+- +++.|..+++.|.||.|+.+|..++.
T Consensus 347 l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~~--------------------------------------- 386 (708)
T PF05804_consen 347 LVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPNF--------------------------------------- 386 (708)
T ss_pred HHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCch---------------------------------------
Confidence 99999999999996 67999999999999999999975421
Q ss_pred chhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcC
Q 037612 326 DEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANT 405 (663)
Q Consensus 326 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 405 (663)
T Consensus 387 -------------------------------------------------------------------------------- 386 (708)
T PF05804_consen 387 -------------------------------------------------------------------------------- 386 (708)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc-CChhHHHHHHHHHHHHhhhhhccHHHHh
Q 037612 406 KGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-GPEDVQYNSAMALMEITAVAEKDAELRR 484 (663)
Q Consensus 406 ~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-~~~~vq~~aa~AL~~i~a~a~~~~~~rr 484 (663)
+..|...|++|+. ++.....++.+++++.++++|-. +.+.++.++...+.|++.... |.++-
T Consensus 387 --------------~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm- 449 (708)
T PF05804_consen 387 --------------REVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLM- 449 (708)
T ss_pred --------------HHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHH-
Confidence 1123456777776 55666678888899999987654 567788888888888875543 33211
Q ss_pred hhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhh---ccHHHHHHhccc-CCHHHHHHHHHHHHhc
Q 037612 485 SAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATET---RMIVPLVKLLDE-REAEVSREASIALTKF 560 (663)
Q Consensus 485 ~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~---~~I~pLV~LL~~-~~~~v~~eAa~AL~~l 560 (663)
. . .++.+.|++..-+..+.+.. +-|-|++..-...+. ..|+||++++.+ .+++...|+...|+|+
T Consensus 450 --~-~-----g~gL~~L~~ra~~~~D~lLl---KlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 450 --C-E-----GNGLQSLMKRALKTRDPLLL---KLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred --H-h-----cCcHHHHHHHHHhcccHHHH---HHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 1 0 23566666444443333332 344566665433332 358999999865 4778888999999999
Q ss_pred ccCCCCCChhhHHHHH-HcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhh
Q 037612 561 ACSDNYLHSDHSKAII-SAGGAKHLVQLVYFG--EQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEW 627 (663)
Q Consensus 561 a~~~~~~~~~~~~~Iv-~~ggi~~Lv~LL~~~--~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~ 627 (663)
+..+ .++..++ +.+-+|.|..+|..| ++.++..++.++..++....-...+++.|+++.|..
T Consensus 519 ~~~~-----ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~ 583 (708)
T PF05804_consen 519 TIPD-----LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIE 583 (708)
T ss_pred ccCC-----cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHH
Confidence 8654 2355544 679999999999866 333777889999989877666788999999999853
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=156.08 Aligned_cols=378 Identities=18% Similarity=0.180 Sum_probs=239.8
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC---CCcc
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR---DPES 222 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~---~~~~ 222 (663)
+.+-+-|.+|.. .....+.+||..|--++..+.+-|..+.+.||||.||.||++.+.++|.+|++||.||.- +++|
T Consensus 233 ~~lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 344556889988 889999999999999999988889999999999999999999999999999999999993 3469
Q ss_pred hHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhH
Q 037612 223 VEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSI 301 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl 301 (663)
+-.|.+.++||.++++|+. +|.++++.++..|.||+++ +.....++.. ++..|-.-+-. .|+.|- .
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~----P~Sgw~---~---- 378 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVII----PHSGWE---E---- 378 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcc----cccccC---C----
Confidence 9999999999999999986 8999999999999999975 4666665543 33444332211 111110 0
Q ss_pred HHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccC
Q 037612 302 HAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNG 381 (663)
Q Consensus 302 ~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g 381 (663)
++.. +..+ ....+.+ +++=+.++-..+-..+. ......|
T Consensus 379 -----------------~~~~-~~~~---~~~vf~n-----~tgcLRNlSs~~~eaR~---------------~mr~c~G 417 (717)
T KOG1048|consen 379 -----------------EPAP-RKAE---DSTVFRN-----VTGCLRNLSSAGQEARE---------------QMRECDG 417 (717)
T ss_pred -----------------CCcc-cccc---cceeeeh-----hhhhhccccchhHHHHH---------------HHhhccc
Confidence 0000 0000 0000000 00000000000000000 0001112
Q ss_pred C-CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCCh-------------------------
Q 037612 382 Q-DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNS------------------------- 435 (663)
Q Consensus 382 ~-~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~------------------------- 435 (663)
. +..+. -+++.+.. .+. | .+-.++|..-|.||+.-..
T Consensus 418 LIdaL~~-----~iq~~i~~-------~~~-d----~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~ 480 (717)
T KOG1048|consen 418 LIDALLF-----SIQTAIQK-------SDL-D----SKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAE 480 (717)
T ss_pred hHHHHHH-----HHHHHHHh-------ccc-c----chhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCccc
Confidence 1 11000 00000000 000 1 1224445555555544111
Q ss_pred -------------hhhHH--Hh-------------hhccHHHHHHHh-hcCChhHHHHHHHHHHHHhhhhhccHHHHhhh
Q 037612 436 -------------PICRS--IT-------------ESRALLCFAVLL-EKGPEDVQYNSAMALMEITAVAEKDAELRRSA 486 (663)
Q Consensus 436 -------------~~~~~--I~-------------esgal~~L~~LL-~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a 486 (663)
.+|.. |. ..-.+.+-..|| ++.+....+.+|.||-|++++.-.-++.-+.+
T Consensus 481 ~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~ 560 (717)
T KOG1048|consen 481 SVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGA 560 (717)
T ss_pred ccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhh
Confidence 01000 00 011222323344 35677999999999999998765555544443
Q ss_pred cCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh---hccHHHHHHhcccC------CHHHHHHHHHHH
Q 037612 487 FKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE---TRMIVPLVKLLDER------EAEVSREASIAL 557 (663)
Q Consensus 487 ~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e---~~~I~pLV~LL~~~------~~~v~~eAa~AL 557 (663)
|-+. +-+.++|+++++.+++.+...++.+|.||+++.++++ +.+||-||+.|-.. +.++...+...|
T Consensus 561 v~~k----ekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl 636 (717)
T KOG1048|consen 561 VFRK----EKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTL 636 (717)
T ss_pred hhhh----ccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhH
Confidence 3121 2256889999999999999999999999999999876 56899999999433 367888899999
Q ss_pred HhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHH
Q 037612 558 TKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLL 603 (663)
Q Consensus 558 ~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L 603 (663)
.|+.... .++.+.+.+.+|++-|+.+.++. +++.-..|-..|
T Consensus 637 ~niv~~~----~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL 679 (717)
T KOG1048|consen 637 NNIVRKN----VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVL 679 (717)
T ss_pred HHHHHHh----HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHH
Confidence 9997543 68899999999999999998775 554444344444
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=145.73 Aligned_cols=296 Identities=19% Similarity=0.209 Sum_probs=219.4
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCC--hhHHH
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNY--PKCQD 266 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~--~~~r~ 266 (663)
-+|--+.+|.+.++..|-+|+.=|..++ ++.+.+..+-+-|+|+.||.+|.+...+||.+|+|||.||.-.. .++.-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 5888999999999999999999999999 57788899999999999999999999999999999999999543 34889
Q ss_pred HHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCcc
Q 037612 267 LFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQ 346 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~ 346 (663)
.|.+.++||.|+++|+.-.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~------------------------------------------------------------- 332 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQ------------------------------------------------------------- 332 (717)
T ss_pred hhhhcCChHHHHHHHHhhc-------------------------------------------------------------
Confidence 9999999999999997310
Q ss_pred chhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHH
Q 037612 347 MHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARA 426 (663)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~A 426 (663)
|. ++++..+..
T Consensus 333 -----------------------------------------------------------------D~----ev~e~iTg~ 343 (717)
T KOG1048|consen 333 -----------------------------------------------------------------DD----EVRELITGI 343 (717)
T ss_pred -----------------------------------------------------------------ch----HHHHHHHHH
Confidence 11 134555577
Q ss_pred HHHHhcCChhhhHHHhhhccHHHHHHHh--------------hcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCc
Q 037612 427 LWHLAKGNSPICRSITESRALLCFAVLL--------------EKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAP 492 (663)
Q Consensus 427 L~~La~gn~~~~~~I~esgal~~L~~LL--------------~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~ 492 (663)
||||+. ++..+..|.++. +..|-..+ +-.+.++-+|++.+|.|+++..+ +-||. |..
T Consensus 344 LWNLSS-~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~---eaR~~-mr~--- 414 (717)
T KOG1048|consen 344 LWNLSS-NDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQ---EAREQ-MRE--- 414 (717)
T ss_pred Hhcccc-hhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhH---HHHHH-Hhh---
Confidence 777775 456666655543 33222211 11235778899999999976332 33442 222
Q ss_pred hhHhHHHHHHHHhh----hcC--cchhhHHHHHHHHhhhchh-------------------------------h--Hh--
Q 037612 493 ACKAVVDQLFRIIE----KAD--SDLLIPCIKAVGNLARTFK-------------------------------A--TE-- 531 (663)
Q Consensus 493 a~~~vv~qL~~ll~----~~~--~~l~~~a~~aLg~La~~~~-------------------------------~--~e-- 531 (663)
|.+.|+.|+-.++ ..+ +.--+.|++-+-||+--.. . ..
T Consensus 415 -c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~ 493 (717)
T KOG1048|consen 415 -CDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSD 493 (717)
T ss_pred -ccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhch
Confidence 4667777776665 333 4455888888888765221 0 00
Q ss_pred --------------h-c--------cHHHHHHhc-ccCCHHHHHHHHHHHHhcccCCCCCChhhHH-HH-HHcCCHHHHH
Q 037612 532 --------------T-R--------MIVPLVKLL-DEREAEVSREASIALTKFACSDNYLHSDHSK-AI-ISAGGAKHLV 585 (663)
Q Consensus 532 --------------~-~--------~I~pLV~LL-~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~-~I-v~~ggi~~Lv 585 (663)
. | +|.|-..|| .+.++.+.+.++.||=|++.+.. ...++.. .+ .++.|.++|+
T Consensus 494 ~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~-~~~~~~~~~v~~kekgl~~l~ 572 (717)
T KOG1048|consen 494 DNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW-TWSEYMRGAVFRKEKGLPPLV 572 (717)
T ss_pred hcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC-cchhHHHhhhhhhccCccHHH
Confidence 0 1 366655556 47788999999999999975543 3455555 34 7899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhh
Q 037612 586 QLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEW 627 (663)
Q Consensus 586 ~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~ 627 (663)
.||+.+++.+...+..+|.|++.+.-+.+.|. .++|+-|.-
T Consensus 573 ~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~ 613 (717)
T KOG1048|consen 573 ELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVR 613 (717)
T ss_pred HHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHH
Confidence 99999999888889999999999999999998 777887754
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-12 Score=130.96 Aligned_cols=249 Identities=16% Similarity=0.149 Sum_probs=180.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHc
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHS 229 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~a 229 (663)
+|+..|.. .+..+|..|+.+|..+-. ...++.+.+++++.++..+..|+++|+.|...+.. ..
T Consensus 27 ~L~~~L~d-~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~ 89 (280)
T PRK09687 27 ELFRLLDD-HNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QD 89 (280)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hH
Confidence 34777778 888889898888887631 23577888888888889999999999988753322 22
Q ss_pred CchHHHHHh-hccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 230 GVCLVFAKI-LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 230 GaIp~Lv~l-L~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
-+++.|..+ ++++++.|+..|+.+|+++....+.. -+.++..|.. ..
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---------~~~a~~~l~~--------------------~~--- 137 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---------SPKIVEQSQI--------------------TA--- 137 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---------chHHHHHHHH--------------------Hh---
Confidence 366788877 57778889999999998885321100 0111111100 00
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
T Consensus 138 -------------------------------------------------------------------------------- 137 (280)
T PRK09687 138 -------------------------------------------------------------------------------- 137 (280)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMA 468 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~A 468 (663)
. -+++ .++..|++||+++. ...+++.|..+|+..+.+|+..|+++
T Consensus 138 ----------~----------D~~~----~VR~~a~~aLg~~~-----------~~~ai~~L~~~L~d~~~~VR~~A~~a 182 (280)
T PRK09687 138 ----------F----------DKST----NVRFAVAFALSVIN-----------DEAAIPLLINLLKDPNGDVRNWAAFA 182 (280)
T ss_pred ----------h----------CCCH----HHHHHHHHHHhccC-----------CHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 0 0122 24778888986442 23478999999999999999999999
Q ss_pred HHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHH
Q 037612 469 LMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAE 548 (663)
Q Consensus 469 L~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~ 548 (663)
|..+.. ++ ..+++.|+.++.+.+++++..|+.+||.+.. ..+||+|++.|+.++
T Consensus 183 Lg~~~~---~~---------------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------~~av~~Li~~L~~~~-- 236 (280)
T PRK09687 183 LNSNKY---DN---------------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD------KRVLSVLIKELKKGT-- 236 (280)
T ss_pred HhcCCC---CC---------------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC------hhHHHHHHHHHcCCc--
Confidence 987621 11 2467889999999999999999999998652 468999999998766
Q ss_pred HHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHh-cCChhHHHHHHHHH
Q 037612 549 VSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVY-FGEQIVQLSALVLL 603 (663)
Q Consensus 549 v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~-~~~~~~q~~Al~~L 603 (663)
++.+|+.||+++.+. ..++.|.+++. ++|+.++..|.++|
T Consensus 237 ~~~~a~~ALg~ig~~---------------~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 237 VGDLIIEAAGELGDK---------------TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhcCCH---------------hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 688999999999632 27899999997 78888888888776
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=127.00 Aligned_cols=235 Identities=18% Similarity=0.184 Sum_probs=175.9
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHH
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~ 269 (663)
-+++|+.+|.+.+..++..|+++|..+.. .-+++.+..+++++++.++..++++|+.|.... ..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----
Confidence 48899999999999999999999988763 446788899999999999999999999996422 11
Q ss_pred hCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchh
Q 037612 270 QHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHN 349 (663)
Q Consensus 270 ~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~ 349 (663)
...+++.|..++..+
T Consensus 88 ~~~a~~~L~~l~~~D----------------------------------------------------------------- 102 (280)
T PRK09687 88 QDNVFNILNNLALED----------------------------------------------------------------- 102 (280)
T ss_pred hHHHHHHHHHHHhcC-----------------------------------------------------------------
Confidence 112345554443211
Q ss_pred hHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHH
Q 037612 350 VVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWH 429 (663)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~ 429 (663)
+|+ .++..|+.+|++
T Consensus 103 -------------------------------------------------------------~d~----~VR~~A~~aLG~ 117 (280)
T PRK09687 103 -------------------------------------------------------------KSA----CVRASAINATGH 117 (280)
T ss_pred -------------------------------------------------------------CCH----HHHHHHHHHHhc
Confidence 122 247778888887
Q ss_pred HhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC
Q 037612 430 LAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD 509 (663)
Q Consensus 430 La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~ 509 (663)
+..+... ....++..|..++...+..|++.+++||.+|. + ..+++.|+.++++.+
T Consensus 118 ~~~~~~~-----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----~---------------~~ai~~L~~~L~d~~ 172 (280)
T PRK09687 118 RCKKNPL-----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----D---------------EAAIPLLINLLKDPN 172 (280)
T ss_pred ccccccc-----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----C---------------HHHHHHHHHHhcCCC
Confidence 7543211 12234556777788889999999999997662 1 236789999999999
Q ss_pred cchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHh
Q 037612 510 SDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVY 589 (663)
Q Consensus 510 ~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~ 589 (663)
+++...++.+||.+... ...++++|+.+|.+.+.+|+.+|+++|+++.. ..++++|+..|.
T Consensus 173 ~~VR~~A~~aLg~~~~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------------~~av~~Li~~L~ 233 (280)
T PRK09687 173 GDVRNWAAFALNSNKYD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------------KRVLSVLIKELK 233 (280)
T ss_pred HHHHHHHHHHHhcCCCC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------------hhHHHHHHHHHc
Confidence 99999999999988321 12589999999999999999999999999742 238999999999
Q ss_pred cCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhh
Q 037612 590 FGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLE 626 (663)
Q Consensus 590 ~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~ 626 (663)
.++ +...|+.+|..+ ++ ...+|.|.
T Consensus 234 ~~~--~~~~a~~ALg~i----g~------~~a~p~L~ 258 (280)
T PRK09687 234 KGT--VGDLIIEAAGEL----GD------KTLLPVLD 258 (280)
T ss_pred CCc--hHHHHHHHHHhc----CC------HhHHHHHH
Confidence 876 456788888655 22 35678887
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=119.80 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=159.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
+..++..|+...++..++.|..+|++.+.. +.+++.|.+.|||+.+..+|.++++.+++.|.+||.|||.+.+|+..|-
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 356788998625889999999999998764 7899999999999999999999999999999999999999999999874
Q ss_pred HcCchHHHHHhhccC--ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 228 HSGVCLVFAKILKEG--PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~--~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
. .|+.+.+...+. +..+|..+..+|.||+.. ++++..++. .||.|+.||.+|+.
T Consensus 93 ~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~~--~i~~ll~LL~~G~~------------------- 148 (254)
T PF04826_consen 93 M--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLAN--YIPDLLSLLSSGSE------------------- 148 (254)
T ss_pred H--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHHh--hHHHHHHHHHcCCh-------------------
Confidence 4 577777766553 578899999999999864 566777754 78999998876630
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
T Consensus 149 -------------------------------------------------------------------------------- 148 (254)
T PF04826_consen 149 -------------------------------------------------------------------------------- 148 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-ChhHHHH
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG-PEDVQYN 464 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~-~~~vq~~ 464 (663)
+.|..+.+.|+||+. |+.+.+.+....++..|+.|+.+. +.++-.+
T Consensus 149 --------------------------------~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~ 195 (254)
T PF04826_consen 149 --------------------------------KTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLR 195 (254)
T ss_pred --------------------------------HHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHH
Confidence 136667789999997 788999999999999999999975 6788889
Q ss_pred HHHHHHHHhhh
Q 037612 465 SAMALMEITAV 475 (663)
Q Consensus 465 aa~AL~~i~a~ 475 (663)
+.+-+-||...
T Consensus 196 ~l~~~~ni~~~ 206 (254)
T PF04826_consen 196 VLTFFENINEN 206 (254)
T ss_pred HHHHHHHHHHh
Confidence 88888888533
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-09 Score=112.97 Aligned_cols=317 Identities=18% Similarity=0.168 Sum_probs=213.1
Q ss_pred hhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc--CChHHHHHHHHHHHHhc-CC
Q 037612 143 PILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE--GKPEGQENAARAIGLLG-RD 219 (663)
Q Consensus 143 ~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s--g~~~~q~~Aa~AL~nLs-~~ 219 (663)
++.+..|.+ .++|+...-.++..+|.++....+. +.+.-|...+|++|.. .+.++-......+..=+ ++
T Consensus 107 ~~~it~~~l----a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 107 DALITLLEL----AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred chhhhHHHH----hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 444566652 3327777778888899888765444 5567889999999863 34555555555555555 57
Q ss_pred CcchHHHHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHH----------HHHHhCCcHHHHHHHhccCccch
Q 037612 220 PESVEHMIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQ----------DLFAQHNIIRLLVGHLAFETVQE 288 (663)
Q Consensus 220 ~~~~~~iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r----------~~i~~~g~I~~LV~LL~sgt~~~ 288 (663)
.-||+.+++.|+.+.+.+.|. .|..++.....|++..|.-+ +++| ..|+++|+...|++.|..+-
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~--- 254 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGI--- 254 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccC---
Confidence 889999999999999997774 46667888899999999863 3443 34555566666666554331
Q ss_pred hhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccc
Q 037612 289 HSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQG 368 (663)
Q Consensus 289 ~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (663)
T Consensus 255 -------------------------------------------------------------------------------- 254 (461)
T KOG4199|consen 255 -------------------------------------------------------------------------------- 254 (461)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHH
Q 037612 369 NVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALL 448 (663)
Q Consensus 369 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~ 448 (663)
||. .-..+..+|..||- +.+.|++|.|+||+.
T Consensus 255 -------------------------------------------dp~----~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~ 286 (461)
T KOG4199|consen 255 -------------------------------------------DPD----SLVSLSTTLKALAV-RDEICKSIAESGGLD 286 (461)
T ss_pred -------------------------------------------Ccc----HHHHHHHHHHHHHH-HHHHHHHHHHccCHH
Confidence 111 12234456677776 679999999999999
Q ss_pred HHHHHhhcC-ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhch
Q 037612 449 CFAVLLEKG-PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTF 527 (663)
Q Consensus 449 ~L~~LL~~~-~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~ 527 (663)
.|++++.+. ....++-+=.+++-+.+.++++ .++ .
T Consensus 287 tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-------------------------------svK-------------s 322 (461)
T KOG4199|consen 287 TLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-------------------------------SVK-------------S 322 (461)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-------------------------------chH-------------H
Confidence 999999874 3344432222222222222221 111 0
Q ss_pred hhHhhccHHHHHHhc--ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChh--HHHHHHHHH
Q 037612 528 KATETRMIVPLVKLL--DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI--VQLSALVLL 603 (663)
Q Consensus 528 ~~~e~~~I~pLV~LL--~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~--~q~~Al~~L 603 (663)
.-.+.++.+-++.++ -..+|.|-.++..+++-++-. .++|+..+++.||...-|+-++..... +|.+|.+++
T Consensus 323 ~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~I 398 (461)
T KOG4199|consen 323 TIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMI 398 (461)
T ss_pred HHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 113467888888887 356788888888888888744 379999999999999999988866433 688899999
Q ss_pred HHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHH
Q 037612 604 CYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651 (663)
Q Consensus 604 ~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~l 651 (663)
.|++.+..+..++.=+.++..|.. .-+..|++.++-+..|+.-|
T Consensus 399 RNiv~rs~~~~~~~l~~GiE~Li~----~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 399 RNIVVRSAENRTILLANGIEKLIR----TAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHhhhhccchHHhccHHHHHH----HHHhcCccHHHHHHHHHHhc
Confidence 999988777655444444555542 23345677777777777655
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.6e-11 Score=105.80 Aligned_cols=110 Identities=23% Similarity=0.280 Sum_probs=101.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~~~~iv 227 (663)
..++..|+. ++.+.|..|+++|.+++..++.++..+++.|++|.|+++|.++++.+++.|+++|+||+.+. .....++
T Consensus 10 ~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 345888899 99999999999999999988889999999999999999999999999999999999999765 6677788
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
+.|+++.|+++|.+++.++++.++|+|.+|+.
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999973
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-08 Score=115.92 Aligned_cols=335 Identities=16% Similarity=0.183 Sum_probs=245.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHH
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
+...+...|++ .+...|..++..|.+++.+++.....+.+.+.++.++.+|.+++..+.+.|+.+|.+|+.++..-..+
T Consensus 78 ~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 78 YQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 33445778889 99999999999999999887777788889999999999999999999999999999999999888899
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
++.+.++.|.+++...+..++-++-+.+.+++..+++....+.+.|.++.++..|+++.
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD--------------------- 215 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD--------------------- 215 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc---------------------
Confidence 99999999999999878889999999999999999999999999999999988876421
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
T Consensus 216 -------------------------------------------------------------------------------- 215 (503)
T PF10508_consen 216 -------------------------------------------------------------------------------- 215 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH---
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY--- 463 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~--- 463 (663)
. -+|.+|...|..||. +..+...+.+.|.+.-|..++.....+-+.
T Consensus 216 --------------------------i----Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 216 --------------------------I----LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred --------------------------H----HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccch
Confidence 0 135667777888887 677788888899999999888754433211
Q ss_pred --HHHH-HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhh--------
Q 037612 464 --NSAM-ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATET-------- 532 (663)
Q Consensus 464 --~aa~-AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~-------- 532 (663)
...+ ...+++.. +....-. .....++.|.+++++.|+..+..|..++|.++.+....+.
T Consensus 265 ~l~g~~~f~g~la~~--~~~~v~~--------~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~ 334 (503)
T PF10508_consen 265 LLPGRMKFFGNLARV--SPQEVLE--------LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA 334 (503)
T ss_pred hhhhHHHHHHHHHhc--ChHHHHH--------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence 1111 11222221 1111110 0123556677888888999999999999999987655331
Q ss_pred --ccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH-------HcCCHH-HHHHHHhcCChhHHHHHHHH
Q 037612 533 --RMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII-------SAGGAK-HLVQLVYFGEQIVQLSALVL 602 (663)
Q Consensus 533 --~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv-------~~ggi~-~Lv~LL~~~~~~~q~~Al~~ 602 (663)
.++...-....++..+++..+..||+++-..+.....++...+. ..+... .++.+++.+=+.++..++..
T Consensus 335 ~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~ 414 (503)
T PF10508_consen 335 MKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRL 414 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHH
Confidence 23555555567888899999999999995333211122221222 233344 56777877745588989999
Q ss_pred HHHHhcCCCChHHHHhc-cchhh
Q 037612 603 LCYIALHVPDSEDLAQA-EVLTV 624 (663)
Q Consensus 603 L~~la~~~~~~~~i~~~-~vl~~ 624 (663)
|..++.+.--.++|... |.+.-
T Consensus 415 l~~l~~~~Wg~~~i~~~~gfie~ 437 (503)
T PF10508_consen 415 LQALAAQPWGQREICSSPGFIEY 437 (503)
T ss_pred HHHHhcCHHHHHHHHhCccHHhh
Confidence 99998776555554444 44333
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=104.22 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=94.9
Q ss_pred HHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCCh
Q 037612 184 LIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYP 262 (663)
Q Consensus 184 ~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~ 262 (663)
.+++.|+|++|+++|+++++..++.|+++|.+++.+ ++....+++.|++|.|+++|+++++.++..++|+|+||+.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999976 8899999999999999999999999999999999999998887
Q ss_pred hHHHHHHhCCcHHHHHHHhccC
Q 037612 263 KCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 263 ~~r~~i~~~g~I~~LV~LL~sg 284 (663)
..+..+.+.|+++.|+++|..+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC
Confidence 8889999999999999999876
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=113.70 Aligned_cols=216 Identities=17% Similarity=0.206 Sum_probs=161.6
Q ss_pred HHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh
Q 037612 185 IIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 185 Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
+.+.+.+..|+.+|+.. ++.+|+.|..+++|.+.++.++..|.+.|+++.+..+|.++++.+++.|.++|.||+.+ .+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 46778899999999965 69999999999999999999999999999999999999999999999999999999974 56
Q ss_pred HHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCC
Q 037612 264 CQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKT 343 (663)
Q Consensus 264 ~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~ 343 (663)
++..+.. .|+.+++.+.+..
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~---------------------------------------------------------- 106 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSP---------------------------------------------------------- 106 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCC----------------------------------------------------------
Confidence 6666532 2333333221110
Q ss_pred CccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHH
Q 037612 344 PSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMA 423 (663)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~A 423 (663)
-|. .+|..+
T Consensus 107 -------------------------------------------------------------------lns----~~Q~ag 115 (254)
T PF04826_consen 107 -------------------------------------------------------------------LNS----EVQLAG 115 (254)
T ss_pred -------------------------------------------------------------------CCC----HHHHHH
Confidence 011 246678
Q ss_pred HHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHH
Q 037612 424 ARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFR 503 (663)
Q Consensus 424 a~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ 503 (663)
.++|.+|+.-+ ..+..+ .+.+++|..||.+|++.+|.++...|++++. |++..|..+... +...++.
T Consensus 116 LrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~----np~~~~~Ll~~q------~~~~~~~ 182 (254)
T PF04826_consen 116 LRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE----NPDMTRELLSAQ------VLSSFLS 182 (254)
T ss_pred HHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc----CHHHHHHHHhcc------chhHHHH
Confidence 88999998643 334444 3479999999999999999999999999963 566666554432 5667888
Q ss_pred Hhhhc-CcchhhHHHHHHHHhhhchhhHh------hccHHHHHHhcccC
Q 037612 504 IIEKA-DSDLLIPCIKAVGNLARTFKATE------TRMIVPLVKLLDER 545 (663)
Q Consensus 504 ll~~~-~~~l~~~a~~aLg~La~~~~~~e------~~~I~pLV~LL~~~ 545 (663)
++... +.++...++.-..||...+.... ..--.+|.-++.+.
T Consensus 183 Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~ 231 (254)
T PF04826_consen 183 LFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGES 231 (254)
T ss_pred HHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccH
Confidence 88876 46788888888899987666431 22345566555443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.7e-09 Score=125.14 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=31.0
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
.++.|+..|++.++.+++.|+.+|..+. ..++++.|+++|++.++.|+..|+.+|..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELV 680 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555442 1234555555555555555555555555553
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-08 Score=108.62 Aligned_cols=356 Identities=16% Similarity=0.168 Sum_probs=218.4
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----ChHHHH---HHHHHHHHhc-CCCcch
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG----KPEGQE---NAARAIGLLG-RDPESV 223 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg----~~~~q~---~Aa~AL~nLs-~~~~~~ 223 (663)
.....+ .+.|.-++..++|+|++.+|+++|..+.+.||-..++++|++- ++.--+ -+-..|.|-. .+++.+
T Consensus 93 rq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~ 171 (604)
T KOG4500|consen 93 RQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELR 171 (604)
T ss_pred HhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHH
Confidence 445566 6788999999999999999999999999999988888888753 232222 3334555555 457789
Q ss_pred HHHHHcCchHHHHHhhccC----------------------------------------------ChhHHHHHHHHHHHH
Q 037612 224 EHMIHSGVCLVFAKILKEG----------------------------------------------PMKVQAVVAWAVSEL 257 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~----------------------------------------------~~~vq~~Aa~aL~nL 257 (663)
.++++.|+++.|+.++.-+ .++..++.-..+...
T Consensus 172 aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ 251 (604)
T KOG4500|consen 172 AQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKA 251 (604)
T ss_pred HHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHH
Confidence 9999999999777665321 122333334444444
Q ss_pred hcCChhHHHHHHhCCcHHHHHHHhcc-CccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCC
Q 037612 258 AGNYPKCQDLFAQHNIIRLLVGHLAF-ETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIP 336 (663)
Q Consensus 258 A~~~~~~r~~i~~~g~I~~LV~LL~s-gt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 336 (663)
+.+ +...-.+++.|.+..+++|++. .+. +.++...++......... ++
T Consensus 252 aen-d~Vkl~la~~gl~e~~~~lv~~~k~~---------t~k~d~~~l~k~~~el~v---------ll------------ 300 (604)
T KOG4500|consen 252 AEN-DLVKLSLAQNGLLEDSIDLVRNMKDF---------TKKTDMLNLFKRIAELDV---------LL------------ 300 (604)
T ss_pred hcC-cceeeehhhcchHHHHHHHHHhcccc---------cchHHHHHHHHhhhhHhh---------hh------------
Confidence 432 2444455666666666666653 111 111111112111110000 00
Q ss_pred CCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHH
Q 037612 337 HPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATK 416 (663)
Q Consensus 337 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~ 416 (663)
.+|+ .-|+.+-. ++ . ..+++.+ - -.+.|
T Consensus 301 -ltGD---eSMq~L~~---------------------------~p---~--------~l~~~~s--w----~~S~d---- 328 (604)
T KOG4500|consen 301 -LTGD---ESMQKLHA---------------------------DP---Q--------FLDFLES--W----FRSDD---- 328 (604)
T ss_pred -hcCc---hHHHHHhc---------------------------Cc---H--------HHHHHHH--H----hcCCc----
Confidence 0000 00111110 00 0 0000000 0 00011
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-----cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCC
Q 037612 417 AYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-----KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNA 491 (663)
Q Consensus 417 ~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-----~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~ 491 (663)
..+..+++-|++|||+ ++++|...++.+-+--|..+|. .|+.++|+.+..||.|+. -|-..|+.|-+
T Consensus 329 ~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~-----IPv~nka~~~~-- 400 (604)
T KOG4500|consen 329 SNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM-----IPVSNKAHFAP-- 400 (604)
T ss_pred hhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc-----ccCCchhhccc--
Confidence 2478999999999998 7899999999999888887775 466789999999999885 22233444544
Q ss_pred chhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh---------hccHHHHHHhcccCCHH-HHHHHHHHHHhcc
Q 037612 492 PACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE---------TRMIVPLVKLLDEREAE-VSREASIALTKFA 561 (663)
Q Consensus 492 ~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e---------~~~I~pLV~LL~~~~~~-v~~eAa~AL~~la 561 (663)
.||++.++..++...|-+.---. |.+.-+..+.| ...+..||+--.+.|+. |..|.-+-|.-|.
T Consensus 401 ---aGvteaIL~~lk~~~ppv~fkll---gTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lI 474 (604)
T KOG4500|consen 401 ---AGVTEAILLQLKLASPPVTFKLL---GTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLI 474 (604)
T ss_pred ---cchHHHHHHHHHhcCCcchHHHH---HHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence 57888888888887765543332 33322222211 12466777776666665 8888888888775
Q ss_pred cCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 562 CSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 562 ~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
-...| .+-...|.+.|||+++|.++....-..|..|+.+||.++
T Consensus 475 kHs~~--kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 475 KHSKY--KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred HhhHh--hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 32211 244567889999999999998887778999999999875
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-07 Score=98.03 Aligned_cols=363 Identities=17% Similarity=0.144 Sum_probs=229.9
Q ss_pred hhhhhHHHHHHHHHHHHHH----hhhcCcccccceecccccHHHHHHHHHh-hhcchHHHHhhccccCCCCccccCCCCc
Q 037612 64 RIIDDTEQVLEKALSLVIK----YRANGIIKRVFTIIPAAAFRKMSSQLEN-SIGDVSWLLRVSASAEDRDDEYLGLPPI 138 (663)
Q Consensus 64 ~l~~~~~~tl~~a~~l~~~----C~~~~~~~r~~~i~~~~~l~~l~~~L~~-~~~~~~~ll~~s~~~~~~~~~~~~~p~i 138 (663)
.|-..+++.+++.+.++.+ |++ |.--|+.. ..+|+.+-++..|.. ..++...+++.-.... ...-+-|.+
T Consensus 67 ~i~e~i~~~~~E~s~ll~~l~d~ck~-~~A~r~la-~~~ga~~~~it~~~la~~~~~~~l~ksL~al~---~lt~~qpdl 141 (461)
T KOG4199|consen 67 KIKEHIGQKLEETTELLEQLADECKK-SLAHRVLA-GKNGAHDALITLLELAESPNESVLKKSLEAIN---SLTHKQPDL 141 (461)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhh-hHHHHHHh-ccCCCcchhhhHHHHhhCCchhHHHHHHHHHH---HhhcCCcch
Confidence 3444466777777776552 332 33334332 367899998888864 2344444433111000 011133444
Q ss_pred ccchhhHhHHHHHHHHhccC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh-hccCChHHHHHHHHHHHHh
Q 037612 139 AANEPILCLIWEQVAILYTA-GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKL-VKEGKPEGQENAARAIGLL 216 (663)
Q Consensus 139 a~~~~i~~~v~~li~~L~~~-G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~L-L~sg~~~~q~~Aa~AL~nL 216 (663)
...+++.-. +..|... .+.+.-......+.--+-.++.||+.+++.+..|.+..- ...|..+.-+++.||+.-|
T Consensus 142 ~da~g~~vv----v~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l 217 (461)
T KOG4199|consen 142 FDAEAMAVV----LKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRAL 217 (461)
T ss_pred hccccHHHH----HHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence 444444333 3333220 333333333344444445568999999999999988844 4567778999999999999
Q ss_pred cCCCc----------chHHHHHcCchHHHHHhhccC-ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 217 GRDPE----------SVEHMIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 217 s~~~~----------~~~~iv~aGaIp~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
..+++ +.+.|+..|+...|++.|+-+ +|++......+|..||-. .+.-..|.+.|++..|+.++.+.+
T Consensus 218 ~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n 296 (461)
T KOG4199|consen 218 LTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSN 296 (461)
T ss_pred cCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhc
Confidence 98765 456789999999999999874 588999999999999975 577788899999999999997532
Q ss_pred cchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCccc
Q 037612 286 VQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQ 365 (663)
Q Consensus 286 ~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~ 365 (663)
.++. +
T Consensus 297 ~~~~------------r--------------------------------------------------------------- 301 (461)
T KOG4199|consen 297 EQGN------------R--------------------------------------------------------------- 301 (461)
T ss_pred hhhH------------H---------------------------------------------------------------
Confidence 1110 0
Q ss_pred ccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhc
Q 037612 366 KQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESR 445 (663)
Q Consensus 366 ~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esg 445 (663)
.+...+...|..|| |++++-..|++.|
T Consensus 302 ----------------------------------------------------~l~k~~lslLralA-G~DsvKs~IV~~g 328 (461)
T KOG4199|consen 302 ----------------------------------------------------TLAKTCLSLLRALA-GSDSVKSTIVEKG 328 (461)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHh-CCCchHHHHHHhc
Confidence 01222334455555 8999999999999
Q ss_pred cHHHHHHHhhc--CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHh
Q 037612 446 ALLCFAVLLEK--GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523 (663)
Q Consensus 446 al~~L~~LL~~--~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~L 523 (663)
|++-++.|+.. .++.|-..+..+++-||-- .||.-+.+|
T Consensus 329 g~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR---~pdhsa~~i------------------------------------ 369 (461)
T KOG4199|consen 329 GLDKIITLALRHSDDPLVIQEVMAIISILCLR---SPDHSAKAI------------------------------------ 369 (461)
T ss_pred ChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc---CcchHHHHH------------------------------------
Confidence 99999998874 3455555555555555411 112111111
Q ss_pred hhchhhHhhccHHHHHHhcc--cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 037612 524 ARTFKATETRMIVPLVKLLD--EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALV 601 (663)
Q Consensus 524 a~~~~~~e~~~I~pLV~LL~--~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 601 (663)
|+|+-...|+.+. -....++++|+|.+.|++..+ .+++ .+.=..||+.|++.-+...+.....|-.
T Consensus 370 -------e~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs----~~~~-~~~l~~GiE~Li~~A~~~h~tce~~aka 437 (461)
T KOG4199|consen 370 -------EAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS----AENR-TILLANGIEKLIRTAKANHETCEAAAKA 437 (461)
T ss_pred -------hcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh----hhcc-chHHhccHHHHHHHHHhcCccHHHHHHH
Confidence 1222222344442 224568999999999998543 2344 4555678999999888776656555777
Q ss_pred HHHHHhcCCCChHH
Q 037612 602 LLCYIALHVPDSED 615 (663)
Q Consensus 602 ~L~~la~~~~~~~~ 615 (663)
+|.-+-.++..+|+
T Consensus 438 ALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 438 ALRDLGCDVYLREE 451 (461)
T ss_pred HHHhcCcchhhHHH
Confidence 78777677766655
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-07 Score=105.19 Aligned_cols=309 Identities=17% Similarity=0.189 Sum_probs=225.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcc-hHHHHHc
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPES-VEHMIHS 229 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~-~~~iv~a 229 (663)
++..|++ .+.+.-..++..|..+...- .-..+ ..+..+.|...|.++++.++..++++|.++..+.+. ...+.+.
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~--~~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSAL--SPDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 5778888 77777788888888876532 23333 467889999999999999999999999999986655 5666789
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhc
Q 037612 230 GVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASN 309 (663)
Q Consensus 230 GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~ 309 (663)
+.++.++.+|.+++.++.+.|+.+|.+|+.+.++ .+.+...+.++.|..++...+
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~------------------------ 173 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSS------------------------ 173 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccC------------------------
Confidence 9999999999999999999999999999986544 445557777777777664321
Q ss_pred ccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccc
Q 037612 310 KTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQN 389 (663)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~ 389 (663)
T Consensus 174 -------------------------------------------------------------------------------- 173 (503)
T PF10508_consen 174 -------------------------------------------------------------------------------- 173 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHH
Q 037612 390 HQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL 469 (663)
+ ..+.++-..+.+++..++..-..+.++|.+..++..|++.|.=+|.++...|
T Consensus 174 -----------------------~----~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 174 -----------------------D----IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred -----------------------H----HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 0 0122344556777777888888888999999999999998889999999999
Q ss_pred HHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC--c---chhhHHH-HHHHHhhhchhhHh----hccHHHHH
Q 037612 470 MEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD--S---DLLIPCI-KAVGNLARTFKATE----TRMIVPLV 539 (663)
Q Consensus 470 ~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~--~---~l~~~a~-~aLg~La~~~~~~e----~~~I~pLV 539 (663)
.+++.. .++ .+... -.++++.|..++...+ + .+.+|+. +..|+++...+..- ...+..|.
T Consensus 227 ~~La~~-~~g---~~yL~------~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~ 296 (503)
T PF10508_consen 227 SELAET-PHG---LQYLE------QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLF 296 (503)
T ss_pred HHHHcC-hhH---HHHHH------hCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 999762 222 22111 1468899999987654 2 3456665 67788888522211 13456667
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHH-HHcC-CHHHHHHH----HhcCChhHHHHHHHHHHHHhcCC
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAI-ISAG-GAKHLVQL----VYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~I-v~~g-gi~~Lv~L----L~~~~~~~q~~Al~~L~~la~~~ 610 (663)
+++++.++..+.-|..+|+.++++ .++-..+ ...| .++..+.- .+.+...++..++.+|.++....
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst-----~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGST-----VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG 368 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCC-----HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence 777889999999999999999865 3555566 4433 44555443 44455558999999999995333
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-08 Score=120.34 Aligned_cols=273 Identities=16% Similarity=0.105 Sum_probs=196.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
+-.|+..|+. .+...|..|+..|..+. ..+.++.|+.+|+..++.++..|+.+|..+.....
T Consensus 623 ~~~L~~~L~D-~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------ 684 (897)
T PRK13800 623 VAELAPYLAD-PDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------ 684 (897)
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------
Confidence 4567889999 99999999999999863 23579999999998899999999999988853221
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
..+.|...|.+.++.|+..|+.+|..+...+ ...|+..|+.... .+ ....+.+|...
T Consensus 685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~------~V--R~~Av~aL~~~ 741 (897)
T PRK13800 685 ---PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDH------RV--RIEAVRALVSV 741 (897)
T ss_pred ---chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCH------HH--HHHHHHHHhcc
Confidence 2368889999999999999999999875321 3456777765431 01 00011111100
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
.. . ..
T Consensus 742 ~~-----------------~---------------------~~------------------------------------- 746 (897)
T PRK13800 742 DD-----------------V---------------------ES------------------------------------- 746 (897)
T ss_pred cC-----------------c---------------------HH-------------------------------------
Confidence 00 0 00
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
+. ....-+++ .++..|+.+|+.+..+ +..+++.|..++...++.|+..|+.
T Consensus 747 ------l~----------~~l~D~~~----~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~ 797 (897)
T PRK13800 747 ------VA----------GAATDENR----EVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLVRAAALA 797 (897)
T ss_pred ------HH----------HHhcCCCH----HHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHH
Confidence 00 00011234 4689999999887653 2234778999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
+|.++... ..+++.|+..+++.++.+...++.+||.+.. ...+++|+.+|++.+.
T Consensus 798 aLg~~g~~-------------------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 798 ALAELGCP-------------------PDDVAAATAALRASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHhcCCc-------------------chhHHHHHHHhcCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCH
Confidence 99776311 1234557788888888999999999997752 3468999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLC 604 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 604 (663)
.|+++|++||+++..+ + ...+.|..+|...++.++..|..+|.
T Consensus 853 ~VR~~A~~aL~~~~~~-----~---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 853 DVRKAAVLALTRWPGD-----P---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHHhccCCC-----H---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999999997311 1 13678889999999988888888873
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-08 Score=105.40 Aligned_cols=334 Identities=15% Similarity=0.135 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHH
Q 037612 161 LEHKSDAAASLVSLARDNDR----YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVF 235 (663)
Q Consensus 161 ~e~k~~AA~~L~~La~~~~~----~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~L 235 (663)
...+..++.++...+.. +. +++.-+++|.+.+|.+...|++.++.+.--+||+|++. ++++|..+.+.||-..+
T Consensus 56 ~tv~~~qssC~A~~sk~-ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv 134 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKN-EVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV 134 (604)
T ss_pred chhhhhhHHHHHHHhhh-HHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence 34444555556655532 32 34444668899999999999989999999999999996 78999999999998889
Q ss_pred HHhhcc---CC----hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 236 AKILKE---GP----MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 236 v~lL~s---~~----~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
+++|+. .+ .+.-..+.+.|.|-.-++.+.|..+++.|+++.|+.++.-+- ++. .+|.-+.++
T Consensus 135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~----------qNa-a~~e~ll~~ 203 (604)
T KOG4500|consen 135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDW----------QNA-ALTEKLLAP 203 (604)
T ss_pred HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhccc----------ccH-HHHHHHHhc
Confidence 998864 22 245566778888988888899999999999999999987552 110 111111110
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
.- + |-+.+. .|-+. + . .++++..
T Consensus 204 f~------------------------------n-----lls~~~-e~~~~--------------~----~---~d~sl~~ 226 (604)
T KOG4500|consen 204 FF------------------------------N-----LLSFVC-EMLYP--------------F----C---KDCSLVF 226 (604)
T ss_pred cc------------------------------c-----HHHHHH-Hhhhh--------------h----h---ccchHHH
Confidence 00 0 000000 00000 0 0 0000000
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMA 468 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~A 468 (663)
.+.+.+ ++.- -+| ..+|.-.-|...+. |+..+....+.|-+.|+..|++.-...-++.=+.+
T Consensus 227 ----~l~~ll------~~~v-~~d------~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~ 288 (604)
T KOG4500|consen 227 ----MLLQLL------PSMV-RED------IDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLN 288 (604)
T ss_pred ----HHHHHH------HHhh-ccc------hhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHH
Confidence 000000 0000 011 34556666666665 88999999999999999999998554444444444
Q ss_pred HHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchh-hHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 469 LMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLL-IPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 469 L~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~-~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
++... . .+.-++-.+|+..+ ..+ ......-++.-+++.+.
T Consensus 289 l~k~~------------------------~-el~vllltGDeSMq~L~~--------------~p~~l~~~~sw~~S~d~ 329 (604)
T KOG4500|consen 289 LFKRI------------------------A-ELDVLLLTGDESMQKLHA--------------DPQFLDFLESWFRSDDS 329 (604)
T ss_pred HHHhh------------------------h-hHhhhhhcCchHHHHHhc--------------CcHHHHHHHHHhcCCch
Confidence 43221 1 12334444443322 111 01256777888899999
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-----CChhHHHHHHHHHHHHhcCCCChHHHHhccch
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-----GEQIVQLSALVLLCYIALHVPDSEDLAQAEVL 622 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-----~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl 622 (663)
+..-.++.|++||+-.+ +|+..+++.|-+..|+.+|-- |+...|-.++.+|.|++..+++...++++|+.
T Consensus 330 ~l~t~g~LaigNfaR~D-----~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvt 404 (604)
T KOG4500|consen 330 NLITMGSLAIGNFARRD-----DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVT 404 (604)
T ss_pred hHHHHHHHHHHhhhccc-----hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchH
Confidence 99999999999999654 789999999999999998653 34446777999999999999999999999876
Q ss_pred hhh
Q 037612 623 TVL 625 (663)
Q Consensus 623 ~~L 625 (663)
...
T Consensus 405 eaI 407 (604)
T KOG4500|consen 405 EAI 407 (604)
T ss_pred HHH
Confidence 654
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-07 Score=112.13 Aligned_cols=337 Identities=14% Similarity=0.137 Sum_probs=231.6
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC---ChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG---KPEGQENAARAIGLLGR-DPESVEHMIHSGVCLV 234 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg---~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~ 234 (663)
-+...+++.++.++.++.. ++........|.+|-||++|--. +.+.++.|-.||.||-. +++.++.=-+.-+++.
T Consensus 206 l~t~D~ee~ar~fLemSss-~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~l 284 (2195)
T KOG2122|consen 206 LGTDDEEEMARTFLEMSSS-PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHL 284 (2195)
T ss_pred cccCCHHHHHHHHHHhccC-chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHH
Confidence 3446778888999999875 66677888999999999999744 35788899999999995 5555544444445555
Q ss_pred HHH----------hhccCC-------hhHHH-HHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhh
Q 037612 235 FAK----------ILKEGP-------MKVQA-VVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS 296 (663)
Q Consensus 235 Lv~----------lL~s~~-------~~vq~-~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~ 296 (663)
|=+ .|..+. .+-+- .|..+|..++= ++|+|..+-+.|++..+-+||... |
T Consensus 285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vD----h------- 352 (2195)
T KOG2122|consen 285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVD----H------- 352 (2195)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHH----H-------
Confidence 442 232221 12233 56677777774 689999999999999999988422 1
Q ss_pred hhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcc
Q 037612 297 KATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTD 376 (663)
Q Consensus 297 ~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~ 376 (663)
.+| + |.
T Consensus 353 ---~mh----------------g------------------p~------------------------------------- 358 (2195)
T KOG2122|consen 353 ---EMH----------------G------------------PE------------------------------------- 358 (2195)
T ss_pred ---Hhc----------------C------------------CC-------------------------------------
Confidence 000 0 00
Q ss_pred ccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhh-hccHHHHHHHhh
Q 037612 377 VKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITE-SRALLCFAVLLE 455 (663)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~e-sgal~~L~~LL~ 455 (663)
..|+.- ..++..|+.||-||-+|...|-...-- .|-+.|++.-|.
T Consensus 359 ---------------------------------tnd~~~-~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~ 404 (2195)
T KOG2122|consen 359 ---------------------------------TNDGEC-NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI 404 (2195)
T ss_pred ---------------------------------CCcHHH-HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHh
Confidence 001111 247889999999999998887665544 555669999999
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHH-hhhcCcchhhHHHHHHHHhhh-------ch
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRI-IEKADSDLLIPCIKAVGNLAR-------TF 527 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~l-l~~~~~~l~~~a~~aLg~La~-------~~ 527 (663)
+..++++.--|..|.|++=-|..|-. .+|.+ -+-|.-|... ++...+.-+.....|||||+. .|
T Consensus 405 s~peeL~QV~AsvLRNLSWRAD~nmK---kvLrE-----~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 405 SAPEELLQVYASVLRNLSWRADSNMK---KVLRE-----TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred cChHHHHHHHHHHHHhccccccccHH---HHHHh-----hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 99989999899999999755544411 12222 1234444433 333334455677889999976 35
Q ss_pred hhHhhccHHHHHHhcc----cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 528 KATETRMIVPLVKLLD----EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 528 ~~~e~~~I~pLV~LL~----~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
|+++ |.+..||.+|. ...-.+-+.|..-|.|..+-- ..+.+|...+-+.+++.-|.+.|++.+-.++-+++.+|
T Consensus 477 CaVD-GALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I-At~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 477 CAVD-GALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI-ATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hccc-chHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh-hccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 5444 78999999994 334445555666665543110 01346666788999999999999999887888899999
Q ss_pred HHHh-cCCCChHHHHhccchhhhh
Q 037612 604 CYIA-LHVPDSEDLAQAEVLTVLE 626 (663)
Q Consensus 604 ~~la-~~~~~~~~i~~~~vl~~L~ 626 (663)
|||. .+..+++.|-+.|.++.|.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLr 578 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLR 578 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHH
Confidence 9996 5556678899999999986
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.8e-08 Score=114.88 Aligned_cols=272 Identities=15% Similarity=0.181 Sum_probs=190.0
Q ss_pred HHHHHHHH-HHHHhhcCChhhHHHHHhcCChHHHHHhhccC------------ChHHHHHHHHHHHHhc-CCCcchHHHH
Q 037612 162 EHKSDAAA-SLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG------------KPEGQENAARAIGLLG-RDPESVEHMI 227 (663)
Q Consensus 162 e~k~~AA~-~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg------------~~~~q~~Aa~AL~nLs-~~~~~~~~iv 227 (663)
+-+..||. +|.-++ -+++||...-|.|++..+-+||..+ ...+++.|..||.||. ++-.||..+-
T Consensus 312 ~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred chhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 44554444 444444 5699999999999999888887432 1357899999999999 5667888777
Q ss_pred -HcCchHHHHHhhccCChhHHHHHHHHHHHHhcC-ChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 228 -HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN-YPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 228 -~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~-~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
..|.+..+|..|.+..++++...|..|.||+=. +.+....+.+.|-+-.|+.--
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~a------------------------ 446 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACA------------------------ 446 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHH------------------------
Confidence 589999999999999889999999999999832 335666666666555443311
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
++. .
T Consensus 447 ---------------------------------------------------l~~-------------------~------ 450 (2195)
T KOG2122|consen 447 ---------------------------------------------------LRN-------------------K------ 450 (2195)
T ss_pred ---------------------------------------------------HHh-------------------c------
Confidence 000 0
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhh-hccHHHHHHHhhcCCh----h
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITE-SRALLCFAVLLEKGPE----D 460 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~e-sgal~~L~~LL~~~~~----~ 460 (663)
+|+ + ...-.-|||||+.+...|-..|-. .|+|..|+.+|..... .
T Consensus 451 ----------------------kEs-T-------LKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLa 500 (2195)
T KOG2122|consen 451 ----------------------KES-T-------LKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLA 500 (2195)
T ss_pred ----------------------ccc-h-------HHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhh
Confidence 000 0 112346999999999888888766 7888888888875431 2
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVK 540 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~ 540 (663)
+-+++-.-|.|.+..--.+.+.|+ ..++.+.|.-|++
T Consensus 501 IIEsaGGILRNVSS~IAt~E~yRQ-------------------------------------------ILR~~NCLq~LLQ 537 (2195)
T KOG2122|consen 501 IIESAGGILRNVSSLIATCEDYRQ-------------------------------------------ILRRHNCLQTLLQ 537 (2195)
T ss_pred hhhcCccHHHHHHhHhhccchHHH-------------------------------------------HHHHhhHHHHHHH
Confidence 333333333333211111111111 1124567888999
Q ss_pred hcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 541 LLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 541 LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
+|.+...-|--+++.+|+||..- +++.+.+|.+.|++..|-+|+.+...++-+-++.+|-|+..+-|
T Consensus 538 ~LKS~SLTiVSNaCGTLWNLSAR----~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 538 HLKSHSLTIVSNACGTLWNLSAR----SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HhhhcceEEeecchhhhhhhhcC----CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99988888889999999999643 36788999999999999999999988776778888999865553
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=98.14 Aligned_cols=336 Identities=20% Similarity=0.235 Sum_probs=211.0
Q ss_pred hhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHh-cCCC
Q 037612 142 EPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLL-GRDP 220 (663)
Q Consensus 142 ~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nL-s~~~ 220 (663)
+-+..++..+...|.+ .++..|..|+.++..+...++. .+-.. .++.|.++|.+.++.++..|..++..+ ..++
T Consensus 110 ~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 184 (526)
T PF01602_consen 110 EMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDD 184 (526)
T ss_dssp HHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHH
T ss_pred chhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcc
Confidence 3344455666777888 8999999999999998876443 22233 689999999888899999999999999 1111
Q ss_pred cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhh
Q 037612 221 ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATS 300 (663)
Q Consensus 221 ~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~s 300 (663)
... . .-...++.|.+++...++-.|......|..++...+..... ...++.+..+|++. ..++.- ..
T Consensus 185 ~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~------~~~V~~--e~ 251 (526)
T PF01602_consen 185 SYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS------SPSVVY--EA 251 (526)
T ss_dssp HHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH------HHHHHH--HH
T ss_pred hhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc------ccHHHH--HH
Confidence 111 1 11223444555556788888888989898888755554422 34677888888632 122210 01
Q ss_pred HHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccccc
Q 037612 301 IHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSN 380 (663)
Q Consensus 301 l~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~ 380 (663)
++.+...... . .+++...-
T Consensus 252 ~~~i~~l~~~----------~---------------------------~~~~~~~~------------------------ 270 (526)
T PF01602_consen 252 IRLIIKLSPS----------P---------------------------ELLQKAIN------------------------ 270 (526)
T ss_dssp HHHHHHHSSS----------H---------------------------HHHHHHHH------------------------
T ss_pred HHHHHHhhcc----------h---------------------------HHHHhhHH------------------------
Confidence 1221111000 0 00000000
Q ss_pred CCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChh
Q 037612 381 GQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPED 460 (663)
Q Consensus 381 g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~ 460 (663)
++...+. ..|+. ++-.+..+|..++..+ ...+. ..-..+..+....+..
T Consensus 271 ------------~L~~lL~----------s~~~n----vr~~~L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~ 319 (526)
T PF01602_consen 271 ------------PLIKLLS----------SSDPN----VRYIALDSLSQLAQSN---PPAVF--NQSLILFFLLYDDDPS 319 (526)
T ss_dssp ------------HHHHHHT----------SSSHH----HHHHHHHHHHHHCCHC---HHHHG--THHHHHHHHHCSSSHH
T ss_pred ------------HHHHHhh----------cccch----hehhHHHHHHHhhccc---chhhh--hhhhhhheecCCCChh
Confidence 1111111 12443 5888999999998865 22222 2222333444478889
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh-hcCcchhhHHHHHHHHhhhchhhHhhccHHHHH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE-KADSDLLIPCIKAVGNLARTFKATETRMIVPLV 539 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~-~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV 539 (663)
++..+...|+.++... | .+.+++.|...+. ..+++++..++.+|+.++..+.......+..++
T Consensus 320 Ir~~~l~lL~~l~~~~--n--------------~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~ 383 (526)
T PF01602_consen 320 IRKKALDLLYKLANES--N--------------VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLL 383 (526)
T ss_dssp HHHHHHHHHHHH--HH--H--------------HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHH
T ss_pred HHHHHHHHHhhccccc--c--------------hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHH
Confidence 9999999999886321 2 1347788888884 447789999999999999998766667899999
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCC
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~~~~q~~Al~~L~~la~~~~~ 612 (663)
++|......+..++...+.++.... ++....+ ++.|+.++.. .++.+...++|.++-.+...++
T Consensus 384 ~ll~~~~~~~~~~~~~~i~~ll~~~----~~~~~~~-----l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 384 KLLEISGDYVSNEIINVIRDLLSNN----PELREKI-----LKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHCTGGGCHCHHHHHHHHHHHHS----TTTHHHH-----HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HhhhhccccccchHHHHHHHHhhcC----hhhhHHH-----HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 9998887888889999998887442 2222332 7788888775 4555666688888766555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-05 Score=89.13 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=84.3
Q ss_pred HHHHHhccCC--CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 150 EQVAILYTAG--SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 150 ~li~~L~~~G--~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
++...+.. . +.+.|.++...|..+...+... .-+.+..++++.+.+...++-+--++..+...+.....+
T Consensus 8 el~~~~~~-~~~~~~~~~~~l~kli~~~~~G~~~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l- 79 (526)
T PF01602_consen 8 ELAKILNS-FKIDISKKKEALKKLIYLMMLGYDI------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL- 79 (526)
T ss_dssp HHHHHHHC-SSTHHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-
T ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHHHcCCCC------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-
Confidence 34455556 6 7778888888888876543321 268999999999888999998888888888654443333
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccC
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
++..|.+=|.++++.++..|..+|++++ +++.... .++.+..+|.+.
T Consensus 80 ---~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~ 126 (526)
T PF01602_consen 80 ---IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDP 126 (526)
T ss_dssp ---HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSS
T ss_pred ---HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCC
Confidence 7788888899999999999999999998 3454433 346666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.3e-07 Score=83.14 Aligned_cols=133 Identities=14% Similarity=0.027 Sum_probs=115.9
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV 223 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~ 223 (663)
-+.++..||.-.+..-+.|.|++-.+.|.|.|-+ +-|+..+.+..++..+|..|.+.+....+.+..+|+|+|.++.|+
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 3567788888888745889999999999999986 889999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHh
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHL 281 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL 281 (663)
..|++++++|..+..|+++...+.-.++.++..|+-..-..|+.+.. |+.|..+
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 99999999999999999999888889999999998655556666654 4444444
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-07 Score=69.13 Aligned_cols=41 Identities=41% Similarity=0.633 Sum_probs=38.6
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC
Q 037612 178 NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR 218 (663)
Q Consensus 178 ~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~ 218 (663)
++++++.|++.|+||+|++||+++++.+|++|+|||+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-05 Score=84.75 Aligned_cols=126 Identities=33% Similarity=0.374 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAK 237 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~ 237 (663)
-+.+.|+.|...|..+..+ -.|..-++..||.+||+.+|++++..+++.|+|+|+..+. +|.....+++.|+.+.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 4889999999999999854 6788999999999999999999999999999999999995 7999999999999999999
Q ss_pred hhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 238 ILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 238 lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
.|.+ ++..++..|-.|++.|-.+++..++.|...++...|...|.+++
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~ 222 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN 222 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence 9976 45678899999999999999999999999999999999887653
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.5e-05 Score=86.76 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=101.8
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhc-CCCcchHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLAR-DNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLG-RDPESVEH 225 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs-~~~~~~~~ 225 (663)
..|+.-|+..++...+.+|+..|..+.. .|++.-..+--.-.||.||.||+.. +.+++-.|++||++|+ .-|.....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 4456667763466666788777766433 3343222222234699999999966 5999999999999999 48999999
Q ss_pred HHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhcc
Q 037612 226 MIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAF 283 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~s 283 (663)
+|++|+||.|++-|.. .-++|-+++..||-.|+..++ .++.+.|+|-..+..|++
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDF 305 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDF 305 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHH
Confidence 9999999999988866 568999999999999997543 457799999988888864
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00012 Score=80.16 Aligned_cols=133 Identities=19% Similarity=0.153 Sum_probs=107.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
|.-||..|.. .+.+.-.--..-|--|+-. ++|+....+.|.|..|++|.....++.......-|+|||-+...+..||
T Consensus 306 V~mLVKaLdr-~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 306 VAMLVKALDR-SNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred HHHHHHHHcc-cchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHh
Confidence 3345666666 5544444444445555544 6689999999999999999999999999999999999999999999999
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
..|-+|.|+.+|.+.+- ...|...|..++. ++..+..++....|+.|...+-+|+
T Consensus 384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~ 438 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGT 438 (791)
T ss_pred hccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999987642 3567788888887 4689999999999999998776665
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.5e-07 Score=66.51 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=38.5
Q ss_pred CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 219 DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 219 ~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
+++++..+++.|+||+|+++|+++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00023 Score=78.94 Aligned_cols=131 Identities=15% Similarity=0.014 Sum_probs=99.3
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHcC
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHSG 230 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG 230 (663)
+..|+. ++.-....|+..|..+...+..+.......-...-|...|+++ +...+.-|+.+|..|...++.|..+.+.+
T Consensus 107 l~lL~~-~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 107 FNLLNR-QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHcC-CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 557777 8888888999988888764332211111111234566677765 47889999999999999999999999999
Q ss_pred chHHHHHhhccC--ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccC
Q 037612 231 VCLVFAKILKEG--PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 231 aIp~Lv~lL~s~--~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
++++|+.+|+.. ...++-++.-++.-|+= +++......+.+.|+.|+++++..
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s 240 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKES 240 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhh
Confidence 999999999763 45778889988988885 445666777889999999999754
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00031 Score=83.98 Aligned_cols=367 Identities=16% Similarity=0.145 Sum_probs=211.6
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChH----HHHHhhccCChHHHHHHHHHHHHhcCCC-c
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVG----PLLKLVKEGKPEGQENAARAIGLLGRDP-E 221 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip----~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~ 221 (663)
++.+++...++ ++...|+-|...|.++...-. +. ..+-++ -|.+.+..++..++..|++|+...+... .
T Consensus 119 ll~~L~q~~~S-~~~~~rE~al~il~s~~~~~~-~~----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 119 LLQFLFQSTKS-PNPSLRESALLILSSLPETFG-NT----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred HHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhc-cc----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc
Confidence 46667888999 999999999999999865311 11 123334 4444555555559999999999999533 3
Q ss_pred chHHHHH-cCchHHHHHhhc----cCChhHHHHHHHHHHHHhcCChhHHH-HHHhCCcHHHHHHHhccCccchhhhHHHh
Q 037612 222 SVEHMIH-SGVCLVFAKILK----EGPMKVQAVVAWAVSELAGNYPKCQD-LFAQHNIIRLLVGHLAFETVQEHSKYAIV 295 (663)
Q Consensus 222 ~~~~iv~-aGaIp~Lv~lL~----s~~~~vq~~Aa~aL~nLA~~~~~~r~-~i~~~g~I~~LV~LL~sgt~~~~s~~~v~ 295 (663)
++...-. .--+|.++.+|. .++.+.-..+-.+|-.|+...|..-. .+. .+|..-.++.++....+..+.
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~--- 267 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRH--- 267 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHH---
Confidence 4333333 335676777774 46666667788888888876655422 221 133333333332221111110
Q ss_pred hhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCc
Q 037612 296 SKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGT 375 (663)
Q Consensus 296 ~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~ 375 (663)
.+|.-++..... +|.+.. ..+.-.+.++...+.+.+ .+.....
T Consensus 268 ---~ALe~ivs~~e~---------------------Ap~~~k----~~~~~~~~lv~~~l~~mt---------e~~~D~e 310 (1075)
T KOG2171|consen 268 ---LALEFLVSLSEY---------------------APAMCK----KLALLGHTLVPVLLAMMT---------EEEDDDE 310 (1075)
T ss_pred ---HHHHHHHHHHHh---------------------hHHHhh----hchhhhccHHHHHHHhcC---------Ccccchh
Confidence 122211111100 000000 000011233333333331 0111122
Q ss_pred cccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh
Q 037612 376 DVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE 455 (663)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~ 455 (663)
|.+++-.++ -+.++| ...|.++|-.+|.+=.... +-.-.+..+..+|.
T Consensus 311 w~~~d~~de-----------------------d~~~~~------~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~ 358 (1075)
T KOG2171|consen 311 WSNEDDLDE-----------------------DDEETP------YRAAEQALDRLALHLGGKQ---VLPPLFEALEAMLQ 358 (1075)
T ss_pred hcccccccc-----------------------ccccCc------HHHHHHHHHHHHhcCChhh---ehHHHHHHHHHHhc
Confidence 222222110 112334 5577888888887543322 22333446667888
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-----
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT----- 530 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~----- 530 (663)
+.+-.-+..+.+||+-|+.|.. +.-+.-+ -.+++-++..+.++.+.++..|+-|||-++++|...
T Consensus 359 S~~w~~R~AaL~Als~i~EGc~---~~m~~~l-------~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 359 STEWKERHAALLALSVIAEGCS---DVMIGNL-------PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred CCCHHHHHHHHHHHHHHHcccH---HHHHHHH-------HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 9998999999999988876654 2222111 124555666777778999999999999999988752
Q ss_pred hhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH-----HHhcCChhHHHHHHHHHH
Q 037612 531 ETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ-----LVYFGEQIVQLSALVLLC 604 (663)
Q Consensus 531 e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~-----LL~~~~~~~q~~Al~~L~ 604 (663)
..+++|.|+..|+ ..++.|+..|+-||.||...- .+.+++ .-++.|++ |+.++.+.+|+.++.++.
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-------~~~~l~-pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-------DKSILE-PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-------cHHHHH-HHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2468889999995 557799999999999996321 223332 22333333 455668888999999998
Q ss_pred HHhcCCC
Q 037612 605 YIALHVP 611 (663)
Q Consensus 605 ~la~~~~ 611 (663)
-.|.-.+
T Consensus 501 svA~AA~ 507 (1075)
T KOG2171|consen 501 SVADAAQ 507 (1075)
T ss_pred HHHHHHh
Confidence 7764443
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00012 Score=78.28 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=122.5
Q ss_pred CChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHH
Q 037612 201 GKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGH 280 (663)
Q Consensus 201 g~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~L 280 (663)
-+++-++.|.--|..+..+-+|...++..|+..+++..|++.+..+++.|||.|+..+.++|..|..+.+.|+.+.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 35788888888888888888999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcC
Q 037612 281 LAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVG 360 (663)
Q Consensus 281 L~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~ 360 (663)
|.+.+.
T Consensus 175 ls~~~~-------------------------------------------------------------------------- 180 (342)
T KOG2160|consen 175 LSSDDP-------------------------------------------------------------------------- 180 (342)
T ss_pred HccCCC--------------------------------------------------------------------------
Confidence 864310
Q ss_pred CCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHH
Q 037612 361 TKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRS 440 (663)
Q Consensus 361 ~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~ 440 (663)
...+..|..|+..|-+++..-+..
T Consensus 181 --------------------------------------------------------~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 181 --------------------------------------------------------NTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred --------------------------------------------------------chHHHHHHHHHHHHHhcCcHHHHH
Confidence 012566778999999999999999
Q ss_pred HhhhccHHHHHHHhhcCC--hhHHHHHHHHHHHHhh
Q 037612 441 ITESRALLCFAVLLEKGP--EDVQYNSAMALMEITA 474 (663)
Q Consensus 441 I~esgal~~L~~LL~~~~--~~vq~~aa~AL~~i~a 474 (663)
+....|..+|...|++++ ...|..++.-+..+..
T Consensus 205 fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999954 4556677777766653
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0016 Score=72.51 Aligned_cols=321 Identities=12% Similarity=0.104 Sum_probs=196.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-----CChHHHHHhhccCChHHHHHHHHHHHHhcCC-C
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEE-----GGVGPLLKLVKEGKPEGQENAARAIGLLGRD-P 220 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-----G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~ 220 (663)
++.-++.+|+.....+.......-+..|..+++.....+.+. ....|++++|..++..++..|...|..|... +
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence 444456666653566666666666666776665545555553 4678999999988889999999999999842 3
Q ss_pred cchHHHHHcCchHHHHHhhccC-ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhh
Q 037612 221 ESVEHMIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKAT 299 (663)
Q Consensus 221 ~~~~~iv~aGaIp~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~ 299 (663)
.+.......-.+..|...|+++ +.+.+..++.+|..|.. .+++|..|.+.+++++|+.+|+..+..
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~------------ 200 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLG------------ 200 (429)
T ss_pred cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhcccc------------
Confidence 2211111111334566666654 46778888899999986 579999999999999999999642100
Q ss_pred hHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccc
Q 037612 300 SIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKS 379 (663)
Q Consensus 300 sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~ 379 (663)
T Consensus 201 -------------------------------------------------------------------------------- 200 (429)
T cd00256 201 -------------------------------------------------------------------------------- 200 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc-CC
Q 037612 380 NGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-GP 458 (663)
Q Consensus 380 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-~~ 458 (663)
.+++=.+..++|-|+... .......+.+.++.|+.+++. ..
T Consensus 201 -------------------------------------~Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~K 242 (429)
T cd00256 201 -------------------------------------FQLQYQSIFCIWLLTFNP-HAAEVLKRLSLIQDLSDILKESTK 242 (429)
T ss_pred -------------------------------------HHHHHHHHHHHHHHhccH-HHHHhhccccHHHHHHHHHHhhhh
Confidence 012333445667776632 333444556677777777774 35
Q ss_pred hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc--CcchhhHHHHHHHHh-hh------chh-
Q 037612 459 EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA--DSDLLIPCIKAVGNL-AR------TFK- 528 (663)
Q Consensus 459 ~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~--~~~l~~~a~~aLg~L-a~------~~~- 528 (663)
+.|-.-+..+|.|+...+... +-++. +.+ -+....+.+++..+... +|+-...-+..|... .. +|.
T Consensus 243 EKvvRv~l~~l~Nll~~~~~~-~~~~~-~~~--~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~ 318 (429)
T cd00256 243 EKVIRIVLAIFRNLISKRVDR-EVKKT-AAL--QMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDE 318 (429)
T ss_pred HHHHHHHHHHHHHHhhccccc-chhhh-HHH--HHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 667777778888876433211 00000 000 00010123444444433 232222222222111 11 111
Q ss_pred ------------------------------hHhhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH
Q 037612 529 ------------------------------ATETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSKAIIS 577 (663)
Q Consensus 529 ------------------------------~~e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~ 577 (663)
..+-.++.-|+++|+ +.++.+..-|+.=++.|+- .+|.....+-+
T Consensus 319 Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr----~~P~gr~i~~~ 394 (429)
T cd00256 319 YKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVR----HYPRGKDVVEQ 394 (429)
T ss_pred HHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHH----HCccHHHHHHH
Confidence 011136899999995 5566666668888888873 24555666777
Q ss_pred cCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 578 AGGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 578 ~ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
.||=..+++|+.++++.++-+|+-++--+
T Consensus 395 lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 395 LGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 89988999999999999999999888655
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00015 Score=79.17 Aligned_cols=275 Identities=21% Similarity=0.215 Sum_probs=186.2
Q ss_pred hHHHHHhcCChHHHHHhhccCCh--HHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHH
Q 037612 181 YGKLIIEEGGVGPLLKLVKEGKP--EGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSEL 257 (663)
Q Consensus 181 ~~~~Ive~G~Ip~Lv~LL~sg~~--~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nL 257 (663)
-.+.|...|++..|++++.+++. .++.+|++.|-.+.. .+|+..|+.-| ...++.+-+. .+++++..++..|.+|
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 46678888999999999999874 457888888877653 57888888877 5666555544 4678889999999999
Q ss_pred hcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCC
Q 037612 258 AGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPH 337 (663)
Q Consensus 258 A~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 337 (663)
=.++++.-..+++.|++...+.-.+
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~r------------------------------------------------------- 274 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCR------------------------------------------------------- 274 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecc-------------------------------------------------------
Confidence 8777665555555555332111000
Q ss_pred CCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHH
Q 037612 338 PMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKA 417 (663)
Q Consensus 338 p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~ 417 (663)
| .||.
T Consensus 275 ----------------------------------------------------------------------R--t~P~--- 279 (832)
T KOG3678|consen 275 ----------------------------------------------------------------------R--TDPA--- 279 (832)
T ss_pred ----------------------------------------------------------------------c--CCHH---
Confidence 0 1343
Q ss_pred HHHHHHHHHHHHHhc-CChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHh
Q 037612 418 YMKAMAARALWHLAK-GNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKA 496 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~-gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~ 496 (663)
+...||.||+|++- |.-+.++.|++.++-.-|.-|--+.++-.+++||.|+.-|+.+-|-.++.||+. .-+
T Consensus 280 -lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~-------Tla 351 (832)
T KOG3678|consen 280 -LLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSG-------TLA 351 (832)
T ss_pred -HHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhcc-------chh
Confidence 47788899998874 456778889999999888888888888899999999999988877778888751 234
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-hhc---cHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhH
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-ETR---MIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHS 572 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-e~~---~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~ 572 (663)
.|++++..++.+ ..|++.... +.+ -+.-||-+|++.--+.+.-+++-|+--|.-.. -...-
T Consensus 352 LVEPlva~~DP~-------------~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs--~Q~K~ 416 (832)
T KOG3678|consen 352 LVEPLVASLDPG-------------RFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS--LQGKT 416 (832)
T ss_pred hhhhhhhccCcc-------------hhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH--hccch
Confidence 677776665432 233332221 112 37888888887766666666665544432211 01223
Q ss_pred HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 573 KAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 573 ~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
+..-+-|+|..|-.+..+++...-.-|-.+|..+-..+
T Consensus 417 kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 417 KVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence 56778899999999998887743333555665443333
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0096 Score=70.81 Aligned_cols=307 Identities=16% Similarity=0.164 Sum_probs=184.9
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV 223 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~ 223 (663)
....+..+..-|+. .++..|-.|.++|.++-. +... +-.++++.++|...++-+++.|+.|+..|-... .
T Consensus 103 alLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~--~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--p 172 (746)
T PTZ00429 103 ALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRV--SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--M 172 (746)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc--HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--c
Confidence 34455666777788 888999999888888743 2222 235788999998889999999999999997522 2
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHA 303 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~ 303 (663)
..+.+.|.++-|.++|.+.++.|+..|..+|..+...++..... ..+.+.-|+..|..-+ + | ....-|+.
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~--E---W---~Qi~IL~l 242 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECN--E---W---GQLYILEL 242 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCC--h---H---HHHHHHHH
Confidence 34557789999999999999999999999999998765543222 2334555666554322 1 1 11111121
Q ss_pred HHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCC
Q 037612 304 VVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQD 383 (663)
Q Consensus 304 lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~ 383 (663)
+.. .. |... .....++....
T Consensus 243 L~~-y~----------------------------P~~~---~e~~~il~~l~---------------------------- 262 (746)
T PTZ00429 243 LAA-QR----------------------------PSDK---ESAETLLTRVL---------------------------- 262 (746)
T ss_pred HHh-cC----------------------------CCCc---HHHHHHHHHHH----------------------------
Confidence 111 00 1000 00011110000
Q ss_pred ccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH
Q 037612 384 NNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY 463 (663)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~ 463 (663)
++ .. ...+. +.-.|++++.++............-.+.-.+|+.|+ ++++++|+
T Consensus 263 ---------~~------------Lq-~~N~A----VVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqy 315 (746)
T PTZ00429 263 ---------PR------------MS-HQNPA----VVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQY 315 (746)
T ss_pred ---------HH------------hc-CCCHH----HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHH
Confidence 00 00 01222 466788888888753211111111122235677774 56778999
Q ss_pred HHHHHHHHHhhhhhccHHHHhh---hc--CCCCch------------------hHhHHHHHHHHhhhcCcchhhHHHHHH
Q 037612 464 NSAMALMEITAVAEKDAELRRS---AF--KPNAPA------------------CKAVVDQLFRIIEKADSDLLIPCIKAV 520 (663)
Q Consensus 464 ~aa~AL~~i~a~a~~~~~~rr~---a~--~~~~~a------------------~~~vv~qL~~ll~~~~~~l~~~a~~aL 520 (663)
-+...|..|.. ..+.+-.. .| +.+.|. +..+++.|..-+.+.|.+....+++||
T Consensus 316 vaLr~I~~i~~---~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAI 392 (746)
T PTZ00429 316 IVCKNIHALLV---IFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAI 392 (746)
T ss_pred HHHHHHHHHHH---HCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 88777765542 22222111 11 122221 122555666666666788999999999
Q ss_pred HHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 521 GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 521 g~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
|.+|..+...-...|..|+++|+.+... ..+++.++.++.
T Consensus 393 g~lA~k~~~~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~Il 432 (746)
T PTZ00429 393 ASLAIKVDSVAPDCANLLLQIVDRRPEL-LPQVVTAAKDIV 432 (746)
T ss_pred HHHHHhChHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHH
Confidence 9999998877778899999999776553 446777776663
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0022 Score=71.32 Aligned_cols=142 Identities=15% Similarity=0.013 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
+++.|+++|+.+-.. .+++.|...+.+.+++|+..|++++..+- . ...+
T Consensus 163 Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG--~------------------~~A~ 211 (410)
T TIGR02270 163 VRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAG--S------------------RLAW 211 (410)
T ss_pred HHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcC--C------------------HhHH
Confidence 578888888765542 35666778889999999999999986551 1 1234
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHc
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISA 578 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ 578 (663)
+.|..+....+..+......+++.. ...+++..|..++++.. ++..+++||+.+...
T Consensus 212 ~~l~~~~~~~g~~~~~~l~~~lal~------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------------- 268 (410)
T TIGR02270 212 GVCRRFQVLEGGPHRQRLLVLLAVA------GGPDAQAWLRELLQAAA--TRREALRAVGLVGDV--------------- 268 (410)
T ss_pred HHHHHHHhccCccHHHHHHHHHHhC------CchhHHHHHHHHhcChh--hHHHHHHHHHHcCCc---------------
Confidence 5555544444433332222333322 12367899999997644 899999999988533
Q ss_pred CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHH
Q 037612 579 GGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDL 616 (663)
Q Consensus 579 ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i 616 (663)
..+++|+.++.... +...|..+++.|+.=.-..+.+
T Consensus 269 ~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~l~~~~l 304 (410)
T TIGR02270 269 EAAPWCLEAMREPP--WARLAGEAFSLITGMDVALEEL 304 (410)
T ss_pred chHHHHHHHhcCcH--HHHHHHHHHHHhhCCCcchhhh
Confidence 27888988885333 5556888888886544443433
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0032 Score=71.68 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=89.4
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC--hHHHHHHHHHHHHhc-CCCcchHHHH
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK--PEGQENAARAIGLLG-RDPESVEHMI 227 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~--~~~q~~Aa~AL~nLs-~~~~~~~~iv 227 (663)
.+.+|.. -+++....|..-.-|++-.++.++..+++.|++|.|..++...+ ++.+..-+..+..+. ++.+....+.
T Consensus 14 ~l~~L~~-~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLH-LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhc-CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 3567777 78888899988888888877888888999999999999998654 666644444444444 5788899999
Q ss_pred HcCchHHHHHhhccCC-hhHHHHHHHHHHHHhcCC
Q 037612 228 HSGVCLVFAKILKEGP-MKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~-~~vq~~Aa~aL~nLA~~~ 261 (663)
+.+.++.|.++|.+.+ ..+.+...+.+.++-..+
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 9999999999999888 788889999999997644
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00028 Score=75.56 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHh------cCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCch
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIE------EGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVC 232 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive------~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaI 232 (663)
.+.+.......-+..|..+++...+.+.+ .....||++++.+++..++..|+..|..|......+..-...+.+
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 67788888888888888887766666655 226889999999999999999999999999755544444347788
Q ss_pred HHHHHhhcc----CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 233 LVFAKILKE----GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 233 p~Lv~lL~s----~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
+.+++.|++ .+.+++..++.+|.+|.. .+++|..+.+.|++++|+.+|+... .+
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~--~~------------------- 206 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQA--TN------------------- 206 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhc--cc-------------------
Confidence 999999875 345677899999999995 6899999999999999999985110 00
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
. +.
T Consensus 207 ~----------------------------------------------------------------------~~------- 209 (312)
T PF03224_consen 207 S----------------------------------------------------------------------NS------- 209 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C----------------------------------------------------------------------CC-------
Confidence 0 00
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc-CChhHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-GPEDVQYNSAM 467 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-~~~~vq~~aa~ 467 (663)
...+++=.+..++|.|+. +......+...+.++.|+.+++. ..+.|-.-+.+
T Consensus 210 --------------------------~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 210 --------------------------SGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred --------------------------CchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHH
Confidence 003567778899999998 67888889999999999999985 46788889999
Q ss_pred HHHHHhhhh
Q 037612 468 ALMEITAVA 476 (663)
Q Consensus 468 AL~~i~a~a 476 (663)
++.|+...+
T Consensus 263 ~l~Nl~~~~ 271 (312)
T PF03224_consen 263 ILRNLLSKA 271 (312)
T ss_dssp HHHHTTSSS
T ss_pred HHHHHHhcc
Confidence 999986544
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.8e-05 Score=56.14 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=36.8
Q ss_pred hhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC
Q 037612 179 DRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR 218 (663)
Q Consensus 179 ~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~ 218 (663)
+.++..+++.|+||+|++||+++++.+++.|+|+|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4488999999999999999999899999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.016 Score=68.89 Aligned_cols=295 Identities=13% Similarity=0.054 Sum_probs=187.9
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhh-cCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLA-RDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La-~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
+.++-..|++ ++...|.+|...+..+. .+.|. ....+-.++++.+.+...++-.--.|.+.+........+
T Consensus 34 ~~ELr~~L~s-~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL 105 (746)
T PTZ00429 34 GAELQNDLNG-TDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL 105 (746)
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH
Confidence 3455677788 88888888887666554 43221 235777888898989999998888888887633332333
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
+|..|.+=|.++++.++..|..+|+++-. ++. ++.++.-++.+ +
T Consensus 106 ----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i---------~e~l~~~lkk~--------------------L- 149 (746)
T PTZ00429 106 ----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSV---------LEYTLEPLRRA--------------------V- 149 (746)
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHH---------HHHHHHHHHHH--------------------h-
Confidence 67888888999999999999888888753 222 22222222100 0
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
.
T Consensus 150 --~----------------------------------------------------------------------------- 150 (746)
T PTZ00429 150 --A----------------------------------------------------------------------------- 150 (746)
T ss_pred --c-----------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHH
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSA 466 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa 466 (663)
-.+| +++..||-|+.++-..+++ .+.+.+-+..|..+|...++.|+.+|.
T Consensus 151 -----------------------D~~p----YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl 200 (746)
T PTZ00429 151 -----------------------DPDP----YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAA 200 (746)
T ss_pred -----------------------CCCH----HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHH
Confidence 0122 3577888888888765543 234566677888999999999999999
Q ss_pred HHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCC
Q 037612 467 MALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDERE 546 (663)
Q Consensus 467 ~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~ 546 (663)
.+|++|....... +. ..+..+..|+..|..-++-.+......|......-...-..+|.-+...|++.+
T Consensus 201 ~aL~eI~~~~~~~--l~---------l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N 269 (746)
T PTZ00429 201 AIVCEVNDYGSEK--IE---------SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQN 269 (746)
T ss_pred HHHHHHHHhCchh--hH---------HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999996322111 11 123345667777766666666666666533211111111357888888899999
Q ss_pred HHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 547 AEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 547 ~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
+-|.-+|+.++.++...-+ ++..+.+. ..-.+||+.|+. +++.+|--++..+..++...+
T Consensus 270 ~AVVl~Aik~il~l~~~~~---~~~~~~~~-~rl~~pLv~L~s-s~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 270 PAVVMGAIKVVANLASRCS---QELIERCT-VRVNTALLTLSR-RDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred HHHHHHHHHHHHHhcCcCC---HHHHHHHH-HHHHHHHHHhhC-CCccHHHHHHHHHHHHHHHCH
Confidence 9999999999999974311 12122211 112267888854 455577777766655554443
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0069 Score=69.98 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=94.6
Q ss_pred chhhHhHHHHHHH-HhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC
Q 037612 141 NEPILCLIWEQVA-ILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD 219 (663)
Q Consensus 141 ~~~i~~~v~~li~-~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~ 219 (663)
.|.|.+.||.+|. -+++ .+.+.|..|+.+++++....+..+..=+..+++|.+++++...+...+.-++|+|+.++.+
T Consensus 358 ~D~Iv~~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 358 GDDIVPHVLPFIEENIQN-PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred cccchhhhHHHHHHhcCC-cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 7888889999998 8899 9999999999999999877666666556689999999999966788889999999999953
Q ss_pred -Ccc-hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcC
Q 037612 220 -PES-VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN 260 (663)
Q Consensus 220 -~~~-~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~ 260 (663)
++- -...-..+.++.|++=|.+. |.+-.+++|++.+|+..
T Consensus 437 l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 437 LPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEA 478 (859)
T ss_pred chhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHH
Confidence 322 22233455666666666654 78899999999999953
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=78.38 Aligned_cols=140 Identities=23% Similarity=0.231 Sum_probs=105.0
Q ss_pred hhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh------ccC-ChHHHHHHHHHHH
Q 037612 142 EPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLV------KEG-KPEGQENAARAIG 214 (663)
Q Consensus 142 ~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL------~sg-~~~~q~~Aa~AL~ 214 (663)
+.+..++.-+-..+++ .+.+...-|+.+|.+|.+. +.+|..+.+.|++++|+++| .+. ....|.++..+++
T Consensus 146 ~~l~~ll~~L~~~l~~-~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSS-SDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHH-TT-H-HHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 3344444333334445 5556668889999999875 88999999999999999999 333 3789999999999
Q ss_pred HhcCCCcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChh-HHHHHHhCCcHHHHHHHhccC
Q 037612 215 LLGRDPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPK-CQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 215 nLs~~~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~-~r~~i~~~g~I~~LV~LL~sg 284 (663)
.||-+++....+.+.+.||.|+++++. ..+.+-..+.+++.||....++ +...+...|+ ++++..|...
T Consensus 224 lLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~-l~~l~~L~~r 294 (312)
T PF03224_consen 224 LLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL-LKTLQNLSER 294 (312)
T ss_dssp HHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H-HHHHHHHHSS
T ss_pred HHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH-HHHHHHHhcC
Confidence 999999999999999999999999976 5688999999999999976543 6666667666 5555656544
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0018 Score=75.31 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=171.1
Q ss_pred hHHHHHhhccC-ChHHHHHHHHHHHHhc--CCCcchHHHHHcCchHHHHHhhccC-ChhHHHHHHHHHHHHhcCChhHHH
Q 037612 191 VGPLLKLVKEG-KPEGQENAARAIGLLG--RDPESVEHMIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQD 266 (663)
Q Consensus 191 Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs--~~~~~~~~iv~aGaIp~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~~~r~ 266 (663)
+..|+.=|... ++..|-.|+.=|+.+- ++.+.-.-+--.-.||.||.+|+.. ..+++-.|+.||.||+..-|..-.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 44555555544 7888888888887655 3555554444566899999999874 589999999999999998899999
Q ss_pred HHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCcc
Q 037612 267 LFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQ 346 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~ 346 (663)
.++++++||.|++=|.. | +
T Consensus 249 ~vV~~~aIPvl~~kL~~----------I-e-------------------------------------------------- 267 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLT----------I-E-------------------------------------------------- 267 (1051)
T ss_pred eeecccchHHHHHhhhh----------h-h--------------------------------------------------
Confidence 99999999999885521 0 0
Q ss_pred chhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHH
Q 037612 347 MHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARA 426 (663)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~A 426 (663)
+-| +-+.+..|
T Consensus 268 ---------------------------------------------------------------yiD------vAEQ~LqA 278 (1051)
T KOG0168|consen 268 ---------------------------------------------------------------YID------VAEQSLQA 278 (1051)
T ss_pred ---------------------------------------------------------------hhH------HHHHHHHH
Confidence 001 23445677
Q ss_pred HHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh
Q 037612 427 LWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE 506 (663)
Q Consensus 427 L~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~ 506 (663)
|-.+++-+ -+.|..+|+|...+..|+.-...+|..|.....|+|..-. -..|+. |+
T Consensus 279 LE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~------sd~f~~-------v~-------- 334 (1051)
T KOG0168|consen 279 LEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR------SDEFHF-------VM-------- 334 (1051)
T ss_pred HHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CccchH-------HH--------
Confidence 88888754 3556889999988888888888999988888777763321 112332 11
Q ss_pred hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH
Q 037612 507 KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ 586 (663)
Q Consensus 507 ~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~ 586 (663)
..+|.|-.+|+..+..+-+.++.+++.++++- .+.++--..+...|=|.-..+
T Consensus 335 --------------------------ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f-~h~~~kLdql~s~dLi~~~~q 387 (1051)
T KOG0168|consen 335 --------------------------EALPLLTPLLSYQDKKPIESVCICLTRIADGF-QHGPDKLDQLCSHDLITNIQQ 387 (1051)
T ss_pred --------------------------HHHHHHHHHHhhccchhHHHHHHHHHHHHHhc-ccChHHHHHHhchhHHHHHHH
Confidence 25777778888888888888888888776442 122333446777777777777
Q ss_pred HHhcCCh----hHHHHHHHHHHHHhcCCCCh-HHHHhccchhhhh
Q 037612 587 LVYFGEQ----IVQLSALVLLCYIALHVPDS-EDLAQAEVLTVLE 626 (663)
Q Consensus 587 LL~~~~~----~~q~~Al~~L~~la~~~~~~-~~i~~~~vl~~L~ 626 (663)
||....+ .+..--+.+|.-++.+.+.. +.+.+-++-..|.
T Consensus 388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~ 432 (1051)
T KOG0168|consen 388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLK 432 (1051)
T ss_pred HHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHH
Confidence 7765522 22333444555555665553 3344555444443
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0089 Score=65.95 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=102.0
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhH
Q 037612 167 AAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKV 246 (663)
Q Consensus 167 AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~v 246 (663)
|..-|.|||.+ -+.-....+...|.-||+.|+-.+.+.-.-...-|..||...+|+..|.+.|.|.-|+++..+.++++
T Consensus 283 a~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL 361 (791)
T KOG1222|consen 283 AVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDL 361 (791)
T ss_pred HHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHH
Confidence 44567788864 44444556778899999999988888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 247 QAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 247 q~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
.......|+||+= +...|..++..|.+|-|+.+|.+++
T Consensus 362 ~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 362 RKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDT 399 (791)
T ss_pred HHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCcc
Confidence 9999999999996 4578888889999999999999876
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.037 Score=64.40 Aligned_cols=131 Identities=21% Similarity=0.232 Sum_probs=98.6
Q ss_pred HHHHHHHHhccCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCCCc--
Q 037612 147 LIWEQVAILYTAG-SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRDPE-- 221 (663)
Q Consensus 147 ~v~~li~~L~~~G-~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~~~-- 221 (663)
.|-.|+.|+.+ . -.+.|++|+..|-.+++ +||..++ +-|.+||+..|+.+ +++.-..+.-++.++-.+++
T Consensus 23 TI~kLcDRves-sTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 23 TIEKLCDRVES-STLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HHHHHHHHHhh-ccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 34556778877 5 47999999999999985 5888887 56799999999976 58999999999999997653
Q ss_pred -----ch----------HH-HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhc-CChhHHHHHHh-CCcHHHHHHHhc
Q 037612 222 -----SV----------EH-MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAG-NYPKCQDLFAQ-HNIIRLLVGHLA 282 (663)
Q Consensus 222 -----~~----------~~-iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~-~~~~~r~~i~~-~g~I~~LV~LL~ 282 (663)
.+ .. |-..+-|..|+..+..-+..|+-.+...|.+|-. ..++.|+.+.. .-+|..||.+|+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 11 3356778888888888888888888888777743 45677766543 456777777774
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00027 Score=60.36 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=70.3
Q ss_pred HHHHHHHh-hcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 037612 447 LLCFAVLL-EKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR 525 (663)
Q Consensus 447 l~~L~~LL-~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~ 525 (663)
|+.|.+.| +++++.+|..++++|.++. + ..+++.|.+++++.++.++..++.+||.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----D---------------PEAIPALIELLKDEDPMVRRAAARALGRIG- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----H---------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----C---------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-
Confidence 46788888 7888999999999987541 1 236788999999988999999999999884
Q ss_pred chhhHhhccHHHHHHhccc-CCHHHHHHHHHHHH
Q 037612 526 TFKATETRMIVPLVKLLDE-REAEVSREASIALT 558 (663)
Q Consensus 526 ~~~~~e~~~I~pLV~LL~~-~~~~v~~eAa~AL~ 558 (663)
....++.|+++|.+ .+..++.+|+.||+
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 24589999999965 46667899999985
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0048 Score=68.58 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=61.9
Q ss_pred HHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCC------------CC
Q 037612 500 QLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDN------------YL 567 (663)
Q Consensus 500 qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~------------~~ 567 (663)
.|..++++.++.+...++++||.|.. ...+|+|...+++.++.|+..|+++|..+...+- ..
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~ 224 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPR------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGP 224 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCcc
Confidence 44444555555555555555554432 2234555555555555555555555544421100 00
Q ss_pred ChhhHHHHHHc----CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHH
Q 037612 568 HSDHSKAIISA----GGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPL 643 (663)
Q Consensus 568 ~~~~~~~Iv~~----ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l 643 (663)
...-...+... ..++.|.+|++.+. ++..++.+|..+ + ....++.|. ..+.++.+..+
T Consensus 225 ~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~l----g------~p~av~~L~------~~l~d~~~aR~ 286 (410)
T TIGR02270 225 HRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLV----G------DVEAAPWCL------EAMREPPWARL 286 (410)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHc----C------CcchHHHHH------HHhcCcHHHHH
Confidence 00000011111 24566777776543 677788888654 2 233455555 33334457777
Q ss_pred HHHHHHHH
Q 037612 644 LQDAKSRL 651 (663)
Q Consensus 644 ~~~a~~~l 651 (663)
+.++..++
T Consensus 287 A~eA~~~I 294 (410)
T TIGR02270 287 AGEAFSLI 294 (410)
T ss_pred HHHHHHHh
Confidence 77777665
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00011 Score=53.71 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=36.7
Q ss_pred CcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 220 PESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 220 ~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
++++..+++.|+|++|+++|++++++++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 458899999999999999999999999999999999997
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00031 Score=59.96 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=67.3
Q ss_pred HHHHHHHh-hhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 498 VDQLFRII-EKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 498 v~qL~~ll-~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
++.|++.+ ++.++.++..++.+||.+. ....+|+|+++|++.++.|+.+|+++|+++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------
Confidence 46678878 6777899999999998543 23579999999999999999999999999842
Q ss_pred HcCCHHHHHHHHhcCC-hhHHHHHHHHH
Q 037612 577 SAGGAKHLVQLVYFGE-QIVQLSALVLL 603 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~-~~~q~~Al~~L 603 (663)
...++.|++++...+ ..++..|+.+|
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 238899999998864 44577777776
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.016 Score=69.94 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=86.4
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHc
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHS 229 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~a 229 (663)
+=.+|++ .+...|..|..+|..++.+..+.-.-.. .-.++-.+..|..+++++|-.|..|++.+|.+ .....+-..+
T Consensus 353 l~~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 353 LEAMLQS-TEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 3457888 8999999999999999877654433322 23677778888888999999999999999975 4445555566
Q ss_pred CchHHHHHhhcc-CChhHHHHHHHHHHHHhcCCh
Q 037612 230 GVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYP 262 (663)
Q Consensus 230 GaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~ 262 (663)
-.+|.|+..+.+ +.++|+..||.|+-|++...+
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 678899999977 568999999999999997543
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.037 Score=59.40 Aligned_cols=226 Identities=25% Similarity=0.279 Sum_probs=162.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
+..++..+.. .+...|..|+..|+.+.. .-.+|+|.++|.+.++.++..|+.+|+.+-.
T Consensus 45 ~~~~~~~l~~-~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 45 ADELLKLLED-EDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 3444667777 788899999888666532 2369999999999999999999997776643
Q ss_pred HcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 228 HSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 228 ~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
.-++++|+++|. +++..++..++++|+.+-.. .++.+|+.++....... +.+
T Consensus 104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~--------------a~~- 156 (335)
T COG1413 104 -PEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGS--------------AAA- 156 (335)
T ss_pred -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhh--------------hhh-
Confidence 237899999998 58889999999999998632 13788888886542000 000
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
+
T Consensus 157 -------------------------------------------------~------------------------------ 157 (335)
T COG1413 157 -------------------------------------------------A------------------------------ 157 (335)
T ss_pred -------------------------------------------------h------------------------------
Confidence 0
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHH
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSA 466 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa 466 (663)
.++.. ..++..++.+|+.+-. ..+++.+..+++.....++..++
T Consensus 158 ------------------------~~~~~-~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa 201 (335)
T COG1413 158 ------------------------LDAAL-LDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAA 201 (335)
T ss_pred ------------------------ccchH-HHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHH
Confidence 00000 1357777888865443 34677889999999999999999
Q ss_pred HHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCC
Q 037612 467 MALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDERE 546 (663)
Q Consensus 467 ~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~ 546 (663)
.+|..+.... ...++.+...+...+..+...++.+||.+.. ...+.+|+..+.+.+
T Consensus 202 ~aL~~~~~~~------------------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~------~~~~~~l~~~l~~~~ 257 (335)
T COG1413 202 SALGQLGSEN------------------VEAADLLVKALSDESLEVRKAALLALGEIGD------EEAVDALAKALEDED 257 (335)
T ss_pred HHHHHhhcch------------------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc------chhHHHHHHHHhccc
Confidence 9998774321 1245667788887778888888888876542 356889999999999
Q ss_pred HHHHHHHHHHHHhc
Q 037612 547 AEVSREASIALTKF 560 (663)
Q Consensus 547 ~~v~~eAa~AL~~l 560 (663)
..+...+..++..+
T Consensus 258 ~~~~~~~~~~~~~~ 271 (335)
T COG1413 258 VILALLAAAALGAL 271 (335)
T ss_pred hHHHHHHHHHhccc
Confidence 98888888877633
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.11 Score=60.90 Aligned_cols=303 Identities=19% Similarity=0.211 Sum_probs=192.9
Q ss_pred CCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHH
Q 037612 134 GLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAI 213 (663)
Q Consensus 134 ~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL 213 (663)
.+..|.+.|-++.+.-+...+|+. .+.-.|..|+-++..+-+..++.. +-.+++.-++|.+.+..+--.+..-+
T Consensus 130 alg~i~s~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~-----e~f~~~~~~lL~ek~hGVL~~~l~l~ 203 (866)
T KOG1062|consen 130 ALGNICSPEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLV-----EHFVIAFRKLLCEKHHGVLIAGLHLI 203 (866)
T ss_pred HhhccCCHHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHH-----HHhhHHHHHHHhhcCCceeeeHHHHH
Confidence 344567777777777776778888 899999999998888776544422 23477788888877766666677777
Q ss_pred HHhcC-CCcchHHHHHcCchHHHHHhhcc---------------CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHH
Q 037612 214 GLLGR-DPESVEHMIHSGVCLVFAKILKE---------------GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLL 277 (663)
Q Consensus 214 ~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s---------------~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~L 277 (663)
+.|+. +++.-...-+ .++.||..|+. .+|=+|.+....|.-|-.++++.-+.+-. .|
T Consensus 204 ~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iL 276 (866)
T KOG1062|consen 204 TELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----IL 276 (866)
T ss_pred HHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HH
Confidence 77774 4544444433 77888888752 13456666666666666555555444321 11
Q ss_pred HHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhh
Q 037612 278 VGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAM 357 (663)
Q Consensus 278 V~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~ 357 (663)
-+.......-.+..++| ..+.|.+=|.+
T Consensus 277 aqvatntdsskN~GnAI----------------------------------------------------LYE~V~TI~~I 304 (866)
T KOG1062|consen 277 AQVATNTDSSKNAGNAI----------------------------------------------------LYECVRTIMDI 304 (866)
T ss_pred HHHHhcccccccchhHH----------------------------------------------------HHHHHHHHHhc
Confidence 11111100000000110 11122111111
Q ss_pred hcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhh
Q 037612 358 KVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPI 437 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~ 437 (663)
. ++ ..++.-|+..|++|-.+.+.|
T Consensus 305 ~----------------------------------------------------~~----~~LrvlainiLgkFL~n~d~N 328 (866)
T KOG1062|consen 305 R----------------------------------------------------SN----SGLRVLAINILGKFLLNRDNN 328 (866)
T ss_pred c----------------------------------------------------CC----chHHHHHHHHHHHHhcCCccc
Confidence 1 01 236888999999999988888
Q ss_pred hHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcC-----CCCchhHhHHHHHHHHhhhcCcch
Q 037612 438 CRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFK-----PNAPACKAVVDQLFRIIEKADSDL 512 (663)
Q Consensus 438 ~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~-----~~~~a~~~vv~qL~~ll~~~~~~l 512 (663)
.+ --|+-.|.+++.....-||.+= +++.+| ...-++-+||.||. .|+.=.+..++.|+..+.+.++++
T Consensus 329 ir----YvaLn~L~r~V~~d~~avqrHr-~tIleC--L~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~ 401 (866)
T KOG1062|consen 329 IR----YVALNMLLRVVQQDPTAVQRHR-STILEC--LKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDF 401 (866)
T ss_pred ee----eeehhhHHhhhcCCcHHHHHHH-HHHHHH--hcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHH
Confidence 54 4577788888887776666654 344333 33345666665543 444445668888999999999999
Q ss_pred hhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCC
Q 037612 513 LIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSD 564 (663)
Q Consensus 513 ~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~ 564 (663)
+..|+.-+..++..|.-....-|..+.+.|...-..|+..+...|..+..++
T Consensus 402 k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 402 KADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 9999999999999998766667888888887777777777777776665433
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00059 Score=53.62 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHH
Q 037612 203 PEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSEL 257 (663)
Q Consensus 203 ~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nL 257 (663)
+.++..|+++|++++........-....++|.|+.+|++.+++|+..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999997665555556677999999999999999999999999976
|
... |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.041 Score=59.06 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHH
Q 037612 460 DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLV 539 (663)
Q Consensus 460 ~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV 539 (663)
.++..++.+|.++-. ...++.+...+...+..++..++.+|+.+...- ..+.+.++
T Consensus 164 ~~r~~a~~~l~~~~~--------------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~ 219 (335)
T COG1413 164 DVRAAAAEALGELGD--------------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLV 219 (335)
T ss_pred HHHHHHHHHHHHcCC--------------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHH
Confidence 567777777765521 124567888898888889999999998876432 13568889
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHH
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQL 597 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~ 597 (663)
..++..+..++..++.+|+..-.. ..+.+|+..+...+.....
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~~~~---------------~~~~~l~~~l~~~~~~~~~ 262 (335)
T COG1413 220 KALSDESLEVRKAALLALGEIGDE---------------EAVDALAKALEDEDVILAL 262 (335)
T ss_pred HHhcCCCHHHHHHHHHHhcccCcc---------------hhHHHHHHHHhccchHHHH
Confidence 999999999999999999988422 2456667767666554433
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.18 Score=55.35 Aligned_cols=131 Identities=17% Similarity=0.079 Sum_probs=95.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcC-ChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHc
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEG-GVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHS 229 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G-~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~a 229 (663)
+.+|.. ++.-.-..+++.+.-++..... +..-.+-. -..-|-.++.++ ++...--|+++|..+...++.|-.++.+
T Consensus 120 l~ll~r-~d~~iv~~~~~Ils~la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~a 197 (442)
T KOG2759|consen 120 LNLLNR-QDTFIVEMSFRILSKLACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIA 197 (442)
T ss_pred HHHHhc-CChHHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeec
Confidence 667777 7666666677777777654321 11000111 133455566664 5778888999999999999999999999
Q ss_pred CchHHHHHhhcc--CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 230 GVCLVFAKILKE--GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 230 GaIp~Lv~lL~s--~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
.++..++..|.+ ....+|-+..-++.-|+=+ |...+.+...+.|+.|+++++..+
T Consensus 198 dg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~ 254 (442)
T KOG2759|consen 198 DGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKEST 254 (442)
T ss_pred CcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHH
Confidence 999999999943 3577888999999999864 555577788999999999998654
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.4 Score=56.33 Aligned_cols=267 Identities=17% Similarity=0.197 Sum_probs=170.3
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcc
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPES 222 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~ 222 (663)
...++..+..-|++ ++.-+.--|..+|++++.. +-.| ...|-..+||+..++-+++.|+-|+..+=. .++.
T Consensus 105 llLltNslknDL~s-~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNS-SNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred HHHHHHHHHhhccC-CCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 33344555667777 7777778888899998752 3222 346777788888899999999999888874 4554
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
.+. .++...++|.+.+..|...+..-+..|+..+++.-..+.. .++-||..|+.=+
T Consensus 177 ~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~----------------- 232 (866)
T KOG1062|consen 177 VEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLT----------------- 232 (866)
T ss_pred HHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHh-----------------
Confidence 443 5778889998888788788888888888877777777766 7788887775210
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
. ... . .++...|+
T Consensus 233 ------~-~~y----s--------------------------------------------------------peydv~gi 245 (866)
T KOG1062|consen 233 ------N-SGY----S--------------------------------------------------------PEYDVHGI 245 (866)
T ss_pred ------c-CCC----C--------------------------------------------------------CccCccCC
Confidence 0 000 0 01111111
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCC----
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP---- 458 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~---- 458 (663)
.||- +|.+..+-|.=|-+|+......+.+ -|.+..++.+
T Consensus 246 ----------------------------~dPF----LQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN 288 (866)
T KOG1062|consen 246 ----------------------------SDPF----LQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKN 288 (866)
T ss_pred ----------------------------CchH----HHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhccccccc
Confidence 2553 3556666666555554444332221 2334443222
Q ss_pred --hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHH
Q 037612 459 --EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV 536 (663)
Q Consensus 459 --~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~ 536 (663)
--+-|+|..+||.|- .++.+|- ..++-|=+++...|-.+++-+..+|.-+-..-...-.+-=.
T Consensus 289 ~GnAILYE~V~TI~~I~----~~~~Lrv-----------lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 289 AGNAILYECVRTIMDIR----SNSGLRV-----------LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred chhHHHHHHHHHHHhcc----CCchHHH-----------HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 278899999999883 3556664 35677778888888888888887777665533322112334
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 537 PLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 537 pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
.++..|++.|.-++++|..-+..+.
T Consensus 354 tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 5677777888888887776666665
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.15 Score=59.57 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=105.8
Q ss_pred HHHhccCC--CHHHHHHHHHHHHHhhcCCh------hhH-----------HHHHhcCChHHHHHhhccCChHHHHHHHHH
Q 037612 152 VAILYTAG--SLEHKSDAAASLVSLARDND------RYG-----------KLIIEEGGVGPLLKLVKEGKPEGQENAARA 212 (663)
Q Consensus 152 i~~L~~~G--~~e~k~~AA~~L~~La~~~~------~~~-----------~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~A 212 (663)
|..|+. . +.|.-..+..++.++...+| ..+ ..|-..+-|..|+..++..+-.++..|..-
T Consensus 67 i~vL~~-D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqL 145 (970)
T KOG0946|consen 67 IQVLQR-DYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQL 145 (970)
T ss_pred HHHHhh-ccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHH
Confidence 888887 4 67777888889988877653 111 123456789999999999999999999999
Q ss_pred HHHhcCC--CcchHHHH-HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhcc
Q 037612 213 IGLLGRD--PESVEHMI-HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAF 283 (663)
Q Consensus 213 L~nLs~~--~~~~~~iv-~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~s 283 (663)
|.+|-.+ .+-+..+. .=-||+.|+.+|.+..+-++-.+.--|..|+.+++..|..++-+++...|..+++.
T Consensus 146 lsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 146 LSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred HHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 9998854 44555555 45699999999999888899999999999999999999999999999988888863
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.043 Score=60.04 Aligned_cols=267 Identities=17% Similarity=0.128 Sum_probs=166.0
Q ss_pred hhHhHHHHHHHHhccCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCC
Q 037612 143 PILCLIWEQVAILYTAG-SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRD 219 (663)
Q Consensus 143 ~i~~~v~~li~~L~~~G-~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~ 219 (663)
....+...+...|+. + +.+-..-|+.+|-.+.+. +++|-.++.++|+..|+..|.++ +...|.....+++-|+-+
T Consensus 153 e~~~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn 230 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQS-STNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN 230 (442)
T ss_pred HHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC
Confidence 334445555667777 6 556677888899999987 77999999999999999999543 578999999999999999
Q ss_pred CcchHHHHHcCchHHHHHhhccC-ChhHHHHHHHHHHHHhcCCh------hHHHHHHhCCcHHHHHHHhccCcc-chhhh
Q 037612 220 PESVEHMIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYP------KCQDLFAQHNIIRLLVGHLAFETV-QEHSK 291 (663)
Q Consensus 220 ~~~~~~iv~aGaIp~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~------~~r~~i~~~g~I~~LV~LL~sgt~-~~~s~ 291 (663)
+.-.+.+-..+-|+.|++++++. .+.|-..+..++.|+....+ +....++.. -+++-+++|..+.. .++-.
T Consensus 231 ~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~ 309 (442)
T KOG2759|consen 231 PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLV 309 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHH
Confidence 99889998899999999999874 47788888999999987553 222344444 45677777764421 11100
Q ss_pred HHHh---hhh-hhHHHHHHhhcccCccccCCCCCccccch--hhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCccc
Q 037612 292 YAIV---SKA-TSIHAVVVASNKTNNANANGSNNKVIDDE--DKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQ 365 (663)
Q Consensus 292 ~~v~---~~~-~sl~~lv~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~ 365 (663)
..+- +.. .+.+.+--. |+ .|...+.+ + |+ |++
T Consensus 310 ~di~~L~e~L~~svq~LsSF------------------DeY~sEl~sG~L-~----WS-------------------P~H 347 (442)
T KOG2759|consen 310 DDIEFLTEKLKNSVQDLSSF------------------DEYKSELRSGRL-E----WS-------------------PVH 347 (442)
T ss_pred HHHHHHHHHHHHHHHhhccH------------------HHHHHHHHhCCc-C----CC-------------------ccc
Confidence 0000 000 011111000 00 00000000 0 00 111
Q ss_pred ccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhc
Q 037612 366 KQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESR 445 (663)
Q Consensus 366 ~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esg 445 (663)
+..+-=+++.....+ +|+.+..++.. -..-..||-. -+.|+.=++.+.+..++--..+..-|
T Consensus 348 k~e~FW~eNa~rlne---------nnyellkiL~~-----lLe~s~Dp~i----L~VAc~DIge~Vr~yP~gk~vv~k~g 409 (442)
T KOG2759|consen 348 KSEKFWRENADRLNE---------NNYELLKILIK-----LLETSNDPII----LCVACHDIGEYVRHYPEGKAVVEKYG 409 (442)
T ss_pred cccchHHHhHHHHhh---------ccHHHHHHHHH-----HHhcCCCCce----eehhhhhHHHHHHhCchHhHHHHHhc
Confidence 100000000000000 11111111100 0011235543 56788889999999999999999999
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHH
Q 037612 446 ALLCFAVLLEKGPEDVQYNSAMALMEI 472 (663)
Q Consensus 446 al~~L~~LL~~~~~~vq~~aa~AL~~i 472 (663)
|-.-++.|+...+++|+++|..|+..|
T Consensus 410 gKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 410 GKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 999999999999999999999887654
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.017 Score=66.06 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=102.5
Q ss_pred ccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC
Q 037612 139 AANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR 218 (663)
Q Consensus 139 a~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~ 218 (663)
..++.+.++ |.+|.. |+.-.+.-+..+|.|+..+-..+|...++.|||..|.+++.+.+...+.++.|+|.++.-
T Consensus 416 ~~~dv~~pl----vqll~d-p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 416 KRNDVAQPL----VQLLMD-PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred ccchhHHHH----HHHhhC-cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 445555555 667788 888899999999999988777789999999999999999999999999999999999996
Q ss_pred CCcchH--HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHh
Q 037612 219 DPESVE--HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQ 270 (663)
Q Consensus 219 ~~~~~~--~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~ 270 (663)
+.++.. ..-..=.-.-++.+.+++++.||+++-..|.||..+..+.-+.+.+
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 554433 3334444556777888999999999999999999876566555544
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.003 Score=49.54 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHh
Q 037612 162 EHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLL 216 (663)
Q Consensus 162 e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nL 216 (663)
..|..|+++|++++...+..-+. .-...+|.|+.+|+++++.++..|++||++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57899999999998765554443 3467899999999988899999999999986
|
... |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.026 Score=62.19 Aligned_cols=176 Identities=13% Similarity=0.214 Sum_probs=131.1
Q ss_pred hhhHHHhhhccHHHHHHHhhcCCh--hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cch
Q 037612 436 PICRSITESRALLCFAVLLEKGPE--DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDL 512 (663)
Q Consensus 436 ~~~~~I~esgal~~L~~LL~~~~~--~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l 512 (663)
..|..|-..|++.-|.+++...+. .|+.+|+.-|-+|.. +++...+-| .....++.+-+... +++
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~-----------~~~~~Il~lAK~~e~~e~ 238 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVAR-----------IGLGVILNLAKEREPVEL 238 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhh-----------ccchhhhhhhhhcCcHHH
Confidence 468999999999999999998765 568899999988863 333222222 11223444444333 567
Q ss_pred hhHHHHHHHHhhhchh-----hHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHH
Q 037612 513 LIPCIKAVGNLARTFK-----ATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587 (663)
Q Consensus 513 ~~~a~~aLg~La~~~~-----~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~L 587 (663)
......-|+++-.... -.++++|..++.-.+..++.+.+.++.||+|++-.+ +.+..+.|++....+-|.-|
T Consensus 239 aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~---~~a~qrrmveKr~~EWLF~L 315 (832)
T KOG3678|consen 239 ARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG---GQAVQRRMVEKRAAEWLFPL 315 (832)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc---hhHHHHHHHHhhhhhhhhhh
Confidence 7666666777644322 245788888888888999999999999999998544 35778899999999999988
Q ss_pred HhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhh
Q 037612 588 VYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLE 626 (663)
Q Consensus 588 L~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~ 626 (663)
-.+.|+....+|..+.|.++.|-.-..++.+.|.+.+.|
T Consensus 316 A~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVE 354 (832)
T KOG3678|consen 316 AFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVE 354 (832)
T ss_pred hcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhh
Confidence 877788778899999999988877777777788776654
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.028 Score=64.90 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=107.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChh---hHHHHHhcCChHHHHHhhccCC-------hHHHHHHHHHHHHhc
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDR---YGKLIIEEGGVGPLLKLVKEGK-------PEGQENAARAIGLLG 217 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~---~~~~Ive~G~Ip~Lv~LL~sg~-------~~~q~~Aa~AL~nLs 217 (663)
+.+-+.+|+. .+++.|.-+..-+-.+...++. .++.|.++=|..=|-+||+++. ...+.-|...|...+
T Consensus 7 l~~c~~lL~~-~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLLKS-ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHhcc-CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4455789999 8888888888888888776663 3456888778888999999843 346677888888888
Q ss_pred CCCcch--HHHHHcCchHHHHHhhccCCh-hHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 218 RDPESV--EHMIHSGVCLVFAKILKEGPM-KVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 218 ~~~~~~--~~iv~aGaIp~Lv~lL~s~~~-~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
.+++.. ..++ +-||.|++++.+++. ++...+..+|..++. +++.+..+.+.|+|+.|++.+.++.
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~~ 153 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQS 153 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhCc
Confidence 876653 4454 479999999988776 899999999999995 6899999999999999999988753
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.091 Score=62.92 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHh
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG-PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKA 496 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~-~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~ 496 (663)
+.|++||..|..+..|-..-|+.-.+.+-+.-+..+|+.+ .+=++..+|.+|.-|= ++..+.|=+.-. -.
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW---~d~~~Arw~G~r------~~ 642 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW---EDYDEARWSGRR------DN 642 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hhcchhhhcccc------cc
Confidence 4799999999999999888888888888777666777775 5778888888887663 223333322111 12
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhc----hhh-----------------HhhccHH----HHHHhcccCCHHHHH
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLART----FKA-----------------TETRMIV----PLVKLLDEREAEVSR 551 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~----~~~-----------------~e~~~I~----pLV~LL~~~~~~v~~ 551 (663)
..+-|..++.+.-+++...++-|||.+-++ |.. .|+ .|+ +|+.+++.+.+-|+.
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~-~i~~~~~~ll~~vsdgsplvr~ 721 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIED-LIIKGLMSLLALVSDGSPLVRT 721 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHH-HHHhhHHHHHHHHhccchHHHH
Confidence 456788888888899999999999998776 332 111 233 899999999999999
Q ss_pred HHHHHHHhcccCCCCCChhhHHHHH
Q 037612 552 EASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 552 eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
|.+.+|+.|+.+ |..|.+..+
T Consensus 722 ev~v~ls~~~~g----~~~~~~~va 742 (1387)
T KOG1517|consen 722 EVVVALSHFVVG----YVSHLKVVA 742 (1387)
T ss_pred HHHHHHHHHHHh----hHHHhHHHh
Confidence 999999999855 345554443
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.018 Score=51.65 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhcc--CChhHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 037612 206 QENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKE--GPMKVQAVVAWAVSELAGNYPKCQDLFAQHN 272 (663)
Q Consensus 206 q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s--~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g 272 (663)
+..-...|+||+ .++.++..+.+.|+||.+...+.- ..|-+++.|.+||.||+.+++++|+.|.+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 455678899999 478999999999999999998853 5689999999999999999999999987644
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.73 Score=53.30 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=109.1
Q ss_pred cHHHHHHHHHhhh-----cchHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHh
Q 037612 100 AFRKMSSQLENSI-----GDVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSL 174 (663)
Q Consensus 100 ~l~~l~~~L~~~~-----~~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~L 174 (663)
.+|.|...|++.. |...+|-+++-..... +..-+.+.|+.+++-.++...++ .++..|..|..++-..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~------lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQF------LDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQF 201 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHH------HhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhhe
Confidence 4566666665532 3466665544321111 00112378888888888888899 9999999998887665
Q ss_pred hcCChhhHHHHHhcC-ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHH
Q 037612 175 ARDNDRYGKLIIEEG-GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253 (663)
Q Consensus 175 a~~~~~~~~~Ive~G-~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~a 253 (663)
.-. .....+...+ -+..|-.|-...+++++++-..+|..|-.....+-.=--.+.|.-+++.-++.+.+|--.|++-
T Consensus 202 i~~--~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEF 279 (885)
T KOG2023|consen 202 III--QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEF 279 (885)
T ss_pred eec--CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHH
Confidence 432 2233333322 4555666655557999999999999888533222222234667777777788888999999999
Q ss_pred HHHHhcCChhHHHHHHhC--CcHHHHHHH
Q 037612 254 VSELAGNYPKCQDLFAQH--NIIRLLVGH 280 (663)
Q Consensus 254 L~nLA~~~~~~r~~i~~~--g~I~~LV~L 280 (663)
...+|.+ |-+++.+... ..||.|++=
T Consensus 280 wla~aeq-pi~~~~L~p~l~kliPvLl~~ 307 (885)
T KOG2023|consen 280 WLALAEQ-PICKEVLQPYLDKLIPVLLSG 307 (885)
T ss_pred HHHHhcC-cCcHHHHHHHHHHHHHHHHcc
Confidence 9999975 5777766542 345555543
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.14 Score=60.55 Aligned_cols=152 Identities=19% Similarity=0.179 Sum_probs=114.9
Q ss_pred HHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHH
Q 037612 425 RALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRI 504 (663)
Q Consensus 425 ~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~l 504 (663)
+.+.++..|++ . +--++-.++...+.+.++|+-.=.=|..+ ++.+|+.. .-+++++++=
T Consensus 42 ~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~y---ak~~P~~~-----------lLavNti~kD 100 (757)
T COG5096 42 KIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERY---AKLKPELA-----------LLAVNTIQKD 100 (757)
T ss_pred HHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hccCHHHH-----------HHHHHHHHhh
Confidence 57788888876 2 12345666777788889998655555444 34445433 3467888888
Q ss_pred hhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHH
Q 037612 505 IEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHL 584 (663)
Q Consensus 505 l~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~L 584 (663)
++++++.++..|++.++.|-..--. ..+++|+.++|.++.++|++.|+.|+.++=.-+ -+...+.|-+.++
T Consensus 101 l~d~N~~iR~~AlR~ls~l~~~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-------~~l~~~~g~~~~l 171 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLRVKELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-------KDLYHELGLIDIL 171 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcChHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-------HhhhhcccHHHHH
Confidence 9999999999999999877432111 347999999999999999999999999994222 2356788899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHH
Q 037612 585 VQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 585 v~LL~~~~~~~q~~Al~~L~~l 606 (663)
..|+...+|.+...|+.+|..+
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 172 KELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHh
Confidence 9999999998888899999766
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.018 Score=51.70 Aligned_cols=65 Identities=28% Similarity=0.291 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc--CChHHHHHHHHHHHHhc-CCCcchHHHHH
Q 037612 164 KSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE--GKPEGQENAARAIGLLG-RDPESVEHMIH 228 (663)
Q Consensus 164 k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s--g~~~~q~~Aa~AL~nLs-~~~~~~~~iv~ 228 (663)
|..-...|++|+..+..+++.|.+.||||.+++.-.- .+|-++|.|.+||.||+ .+++|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5667788999999999999999999999999998653 36999999999999999 57888888765
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.49 Score=50.23 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=86.8
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHH-HhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLI-IEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~I-ve~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
-+++..|+. -++..|..|...|..|... . .+... .+.-.++.|.+|+....+ -+.|++||.|+|.++.-+..++
T Consensus 6 ~elv~ll~~-~sP~v~~~AV~~l~~lt~~-~-~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHS-LSPPVRKAAVEHLLGLTGR-G-LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHhcc-CChHHHHHHHHHHhhcccc-c-hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 456888899 9999999999999998764 1 12211 123357888899876555 7789999999999999999998
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHH
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLF 268 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i 268 (663)
.. .+..++..+.++....-...+..|+||+..+.......
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll 120 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALL 120 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHH
Confidence 88 78888888877755666778889999998665555443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.51 Score=55.32 Aligned_cols=95 Identities=22% Similarity=0.192 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL 239 (663)
+...|.-|.++++.+-. ++... -...||.++|+.+++-.++.|+..+.++ +..+.+...+.|.++.|-.++
T Consensus 99 np~iR~lAlrtm~~l~v--~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll 169 (734)
T KOG1061|consen 99 NPLIRALALRTMGCLRV--DKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLL 169 (734)
T ss_pred CHHHHHHHhhceeeEee--hHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHh
Confidence 44555555555555432 11111 2477999999999999999888777665 456778888999999999999
Q ss_pred ccCChhHHHHHHHHHHHHhcCChh
Q 037612 240 KEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 240 ~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
.+.++.|..+|..+|..+...+++
T Consensus 170 ~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 170 SDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred cCCCchHHHHHHHHHHHHHHhCCC
Confidence 998999999999999999876543
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.13 Score=59.52 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=101.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-c---c---hhhHHHHH
Q 037612 447 LLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-S---D---LLIPCIKA 519 (663)
Q Consensus 447 l~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~---~---l~~~a~~a 519 (663)
+.-..++|+..+++.|.-+..-+-.+....+.+...+|..|+- -..+-|-||++.+. + . .+.-++.-
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a------ig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEA------IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh------cChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 4455678888885555554444445544444344445545532 23567889999854 1 2 22223333
Q ss_pred HHHhhhchhhH-h---hccHHHHHHhcccCCH-HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChh
Q 037612 520 VGNLARTFKAT-E---TRMIVPLVKLLDEREA-EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594 (663)
Q Consensus 520 Lg~La~~~~~~-e---~~~I~pLV~LL~~~~~-~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~ 594 (663)
|.+.++..... . ..-||.|++.+.+.+. .+..++...|..+++. ++..+++++.|+++.|++.+..+..
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-----~~G~~aLl~~g~v~~L~ei~~~~~~- 154 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-----PEGAKALLESGAVPALCEIIPNQSF- 154 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-----cHhHHHHHhcCCHHHHHHHHHhCcc-
Confidence 33333321111 1 2459999999987777 9999999999999843 5889999999999999999988544
Q ss_pred HHHHHHHHHHHHhcCCC
Q 037612 595 VQLSALVLLCYIALHVP 611 (663)
Q Consensus 595 ~q~~Al~~L~~la~~~~ 611 (663)
.+..|+.+|.++....+
T Consensus 155 ~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLG 171 (543)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 66779999988865544
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.017 Score=54.31 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=83.9
Q ss_pred CChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 189 GGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 189 G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
+-+..||.-.... +.+.|+.-..-|.|.+-+|.|-..+.+..++..+|.-|...+..+.+.+.++|+|++. ++.+...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHH
Confidence 4466777777654 5889998888888999999999999999999999999999999999999999999997 6788899
Q ss_pred HHhCCcHHHHHHHhccC
Q 037612 268 FAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sg 284 (663)
|.+.+++|..+..|++.
T Consensus 95 I~ea~g~plii~~lssp 111 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSP 111 (173)
T ss_pred HHHhcCCceEEeecCCC
Confidence 99999999999888765
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.7 Score=51.00 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=88.0
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHH
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEH 225 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~ 225 (663)
..+.-++..|+.-|+...+.-|...+.-+. .+..+...+++.|.+-.|+.||-| -|..++.+..+|+.|+.+++....
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~ke 1848 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKE 1848 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHH
Confidence 333444555555255556666666665554 567788899999999999999976 578899999999999999999999
Q ss_pred HHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcC
Q 037612 226 MIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGN 260 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~ 260 (663)
-.+.|++--+..++. +.++.++.++|..++.|..+
T Consensus 1849 A~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1849 ALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 999999888887774 46688889999999999863
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.6 Score=50.15 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=86.8
Q ss_pred HHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhh------hc-CCC-----
Q 037612 423 AARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRS------AF-KPN----- 490 (663)
Q Consensus 423 Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~------a~-~~~----- 490 (663)
+...|+.++. ....+.+...+..+|++...|-...+++|+.+-.+|-.++..-+ |+++.+- ++ +|+
T Consensus 274 slellg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~dI~~~ip~Lld~l~dp~~~~~e 351 (569)
T KOG1242|consen 274 SLELLGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPDIQKIIPTLLDALADPSCYTPE 351 (569)
T ss_pred HHHHHHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhcCcccchHH
Confidence 3334444443 23334445556678888888888888888888888888876654 6666651 01 111
Q ss_pred ---------------CchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--h----ccHHHHHHhcccCCHHH
Q 037612 491 ---------------APACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--T----RMIVPLVKLLDEREAEV 549 (663)
Q Consensus 491 ---------------~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~----~~I~pLV~LL~~~~~~v 549 (663)
.|.-.-.++-|.+=+...+...+..++..+||+++-..... . ..+|.|=..+....|++
T Consensus 352 ~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 352 CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH
Confidence 12222244545577777777888899999999998663322 1 23444444556779999
Q ss_pred HHHHHHHHHhc
Q 037612 550 SREASIALTKF 560 (663)
Q Consensus 550 ~~eAa~AL~~l 560 (663)
+..+++||+.+
T Consensus 432 R~vaarAL~~l 442 (569)
T KOG1242|consen 432 RAVAARALGAL 442 (569)
T ss_pred HHHHHHHHHHH
Confidence 99999999766
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.42 Score=48.27 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhcCC--hhhhHHHhh--hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchh
Q 037612 419 MKAMAARALWHLAKGN--SPICRSITE--SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPAC 494 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn--~~~~~~I~e--sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~ 494 (663)
-+..|..-|-.+..|+ ......+.+ ...+.++...+.+....+-..|+.++..++..-.+. |. |-+
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-------~~---~~~ 92 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-------FE---PYA 92 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-------GH---HHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-------HH---HHH
Confidence 4677888888888877 222222222 133457777777778889999999999887544322 22 334
Q ss_pred HhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhcc-HHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHH
Q 037612 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRM-IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSK 573 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~-I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~ 573 (663)
...++.|++.+.+....+...|..+|-.+...... ..++ ++.+...+.+.++.++.+++..|..+...-. ....
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~----~~~~ 167 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSY-SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG----SDSS 167 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---------G
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc----chHh
Confidence 56788888888877777888898889888775441 1234 6777777899999999999998888753211 0011
Q ss_pred HHHH----cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChH
Q 037612 574 AIIS----AGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSE 614 (663)
Q Consensus 574 ~Iv~----~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~ 614 (663)
.+-. ..-++.++.++..+++.+...|-.+++.+..+.|++.
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 1111 2345677788889999898889999998877777654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.48 Score=55.13 Aligned_cols=224 Identities=15% Similarity=0.189 Sum_probs=143.7
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHH
Q 037612 191 VGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269 (663)
Q Consensus 191 Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~ 269 (663)
-+-++.||.+..+-+++.|...|+.+.. .|+ ++ .-.+|-|++=|.++|+.|+..|+..++.||..+|.+--.+
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Al--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---AL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 4567889998889999999999999984 443 33 2368999999999999999999999999998777653332
Q ss_pred hCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchh
Q 037612 270 QHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHN 349 (663)
Q Consensus 270 ~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~ 349 (663)
-|.+-.||...+ ..|.. |+ +.+. +
T Consensus 220 ----AP~ffkllttSs----NNWmL------IK-iiKL----------------F------------------------- 243 (877)
T KOG1059|consen 220 ----APLFYKLLVTSS----NNWVL------IK-LLKL----------------F------------------------- 243 (877)
T ss_pred ----cHHHHHHHhccC----CCeeh------HH-HHHH----------------H-------------------------
Confidence 366677775332 01111 00 0000 0
Q ss_pred hHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHH
Q 037612 350 VVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWH 429 (663)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~ 429 (663)
+++. |+ | |-
T Consensus 244 -----~aLt----------------------------------pl----------------E-PR--------------- 252 (877)
T KOG1059|consen 244 -----AALT----------------------------------PL----------------E-PR--------------- 252 (877)
T ss_pred -----hhcc----------------------------------cc----------------C-ch---------------
Confidence 0000 00 0 00
Q ss_pred HhcCChhhhHHHhhhccHHHHHHHhhcCC-hhHHHHHHHHHHH--HhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh
Q 037612 430 LAKGNSPICRSITESRALLCFAVLLEKGP-EDVQYNSAMALME--ITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE 506 (663)
Q Consensus 430 La~gn~~~~~~I~esgal~~L~~LL~~~~-~~vq~~aa~AL~~--i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~ 506 (663)
.-..-+++|..|+++.. ..+-|+|.-++-. +.++-.++. ..++..|.-|--+++
T Consensus 253 ------------LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~-----------asiqLCvqKLr~fie 309 (877)
T KOG1059|consen 253 ------------LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHS-----------ASIQLCVQKLRIFIE 309 (877)
T ss_pred ------------hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcH-----------HHHHHHHHHHhhhhh
Confidence 00123556666666654 3677777666532 222211121 223456777888999
Q ss_pred hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 507 KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 507 ~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
+.|+.+++-++-|++-++.+....-..--.-++++|++.|+-++-+|..-|..+.+. +|.+.|+
T Consensus 310 dsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIV 373 (877)
T KOG1059|consen 310 DSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIV 373 (877)
T ss_pred cCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHH
Confidence 999999999999999998876542222234568889999999999988888877644 3455555
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.48 E-value=6.3 Score=42.46 Aligned_cols=126 Identities=16% Similarity=0.106 Sum_probs=97.8
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCChhh----HHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcC
Q 037612 155 LYTAGSLEHKSDAAASLVSLARDNDRY----GKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSG 230 (663)
Q Consensus 155 L~~~G~~e~k~~AA~~L~~La~~~~~~----~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG 230 (663)
|.. .+..+|.-|+..++.+..++|.| ...++..|..|.++.++...+.++-+.|...|..|+..++--..|++..
T Consensus 91 Lia-ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSe 169 (524)
T KOG4413|consen 91 LIA-DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESE 169 (524)
T ss_pred ccC-CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccc
Confidence 334 57789999999999988777744 3456688999999999988889999999999999999999999999888
Q ss_pred chHHHHHh---hccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc
Q 037612 231 VCLVFAKI---LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 231 aIp~Lv~l---L~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~ 282 (663)
-..++-.. .++. .-++..+-..+-.+.+.+++.-..+-..|.+..|..=|.
T Consensus 170 llDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElk 223 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK 223 (524)
T ss_pred cCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc
Confidence 77765433 2333 345667777777887778888888888887666655554
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.37 E-value=8.2 Score=45.59 Aligned_cols=111 Identities=24% Similarity=0.139 Sum_probs=81.0
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhh---HHHHHhcCChHHHHHhhccCChHHH---HHHHHHHHHhcCCC
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRY---GKLIIEEGGVGPLLKLVKEGKPEGQ---ENAARAIGLLGRDP 220 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~---~~~Ive~G~Ip~Lv~LL~sg~~~~q---~~Aa~AL~nLs~~~ 220 (663)
++-..+.+|++ .+..+|++||..+.+++.. -++ -+.....|.| |.+.|.+..+++- -.|..|+.|.-+-.
T Consensus 800 i~stiL~rLnn-ksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 800 ICSTILWRLNN-KSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHhcC-CChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 44556779999 9999999999999999853 111 2334445544 7778877777654 45666666665333
Q ss_pred cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh
Q 037612 221 ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 221 ~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
.-..-| .|.+|.|.-+|++.+..||++....++.+|..+++
T Consensus 876 km~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 876 KMTPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred ccCCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 333333 57899999999999999999999999999987766
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.36 E-value=12 Score=44.00 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--hccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHH
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--TRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSK 573 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~ 573 (663)
.++||-.+|.+..+.+.+-+..++.-|+..-.+.+ +.-...++..|. ++|.-+++.|+.-|..+|- .+|.+
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD------~~Nak 403 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD------VSNAK 403 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc------hhhHH
Confidence 57889999999999999999888888877644433 123777888898 9999999999999999973 36688
Q ss_pred HHHHcCCHHHHHHHHhcCChhHHHH
Q 037612 574 AIISAGGAKHLVQLVYFGEQIVQLS 598 (663)
Q Consensus 574 ~Iv~~ggi~~Lv~LL~~~~~~~q~~ 598 (663)
.|++ -|.+.|.+-|..+++.
T Consensus 404 ~IV~-----elLqYL~tAd~siree 423 (938)
T KOG1077|consen 404 QIVA-----ELLQYLETADYSIREE 423 (938)
T ss_pred HHHH-----HHHHHHhhcchHHHHH
Confidence 8875 5778777777655554
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.84 Score=46.08 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=68.6
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCC--hhhHHHHHhc--CChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCc
Q 037612 156 YTAGSLEHKSDAAASLVSLARDN--DRYGKLIIEE--GGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGV 231 (663)
Q Consensus 156 ~~~G~~e~k~~AA~~L~~La~~~--~~~~~~Ive~--G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGa 231 (663)
.. .+.+.|.+|...|..+...+ ..+...+++. ..++.++..+.+....+...|..++..|+..-...-.-.-.-.
T Consensus 17 ~~-~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SE-SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T--SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 45 68899999999999998766 2334444321 5667888888877778899999999999954333232234458
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHhcCC
Q 037612 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 232 Ip~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~ 261 (663)
+|+|++.+.++...+++.|..+|..+..+.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHC
Confidence 899999999998899999999999999754
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.17 Score=56.28 Aligned_cols=228 Identities=18% Similarity=0.129 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
++..|.|++.-+.-+...-+..++...+.......|.+..-.+|..++|++.+|++.=-.+.- .+.|.+++..-
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~P------s~~s~~eR~sg 480 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMP------TPDSFQERFSG 480 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCC------CchHHHHHHHH
Confidence 577788888665554433444444444444444555555668999999999999743221100 01123344433
Q ss_pred HHHHHHhhhc-----C-cchhhHHHHHHHHhhhchhhHh--------hc-cHHHHHHhcccCCHHHHHHHHHHHHhcccC
Q 037612 499 DQLFRIIEKA-----D-SDLLIPCIKAVGNLARTFKATE--------TR-MIVPLVKLLDEREAEVSREASIALTKFACS 563 (663)
Q Consensus 499 ~qL~~ll~~~-----~-~~l~~~a~~aLg~La~~~~~~e--------~~-~I~pLV~LL~~~~~~v~~eAa~AL~~la~~ 563 (663)
..|.+++... + +.++..+.++|||+..-....+ .+ ++..+-..+-...++|+=+|+.|++|+-.+
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 4444555432 2 6789999999999988655332 12 233333334577889999999999999876
Q ss_pred CCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCChH--HHHhccchhhhhhccccc---ccccc
Q 037612 564 DNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLLCYIALHVPDSE--DLAQAEVLTVLEWTSKQS---HMTQD 637 (663)
Q Consensus 564 ~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L~~la~~~~~~~--~i~~~~vl~~L~~~~~~~---~~~q~ 637 (663)
+...-.+.-.+ --..+.|++|+... +-++.+.|+.+|.--....++.. .+.=...+..|.|..+.. +-...
T Consensus 561 ~a~~lq~~~wA---~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~aLi~s~~~v~f~eY~~~ 637 (728)
T KOG4535|consen 561 PALPLQTAPWA---SQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTALQKSEDTIDFLEYKYC 637 (728)
T ss_pred ccccccCCCch---HHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64321111111 12457788988764 55677788888854443333322 222223344444433322 11111
Q ss_pred CCcHHHHHHHHHHHHhhh
Q 037612 638 ETVDPLLQDAKSRLELYQ 655 (663)
Q Consensus 638 ~~~~~l~~~a~~~le~~~ 655 (663)
.....-++.|+++++..-
T Consensus 638 Dsl~~q~c~av~hll~la 655 (728)
T KOG4535|consen 638 DSLRTQICQALIHLLSLA 655 (728)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 233445677777777643
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.01 E-value=6.4 Score=45.20 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=85.0
Q ss_pred hhhHhHHHHHHH-HhccCCCHHHHHHHHHHHHHhhcCChh-hHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC
Q 037612 142 EPILCLIWEQVA-ILYTAGSLEHKSDAAASLVSLARDNDR-YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD 219 (663)
Q Consensus 142 ~~i~~~v~~li~-~L~~~G~~e~k~~AA~~L~~La~~~~~-~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~ 219 (663)
+-|.--||.+|. -+++ .+...|+.|+.+++++..+.++ .+..++ ..++|.+..++......++..++||++.|+.+
T Consensus 361 d~i~~pVl~FvEqni~~-~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 361 DKIMRPVLGFVEQNIRS-ESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHhHHHHHHHHHHhccC-chhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 344444777777 6788 8999999999999999865433 233333 56888999888766688999999999999852
Q ss_pred CcchHHHHHcCchHHHHHhhccC---ChhHHHHHHHHHHHHhcCChh
Q 037612 220 PESVEHMIHSGVCLVFAKILKEG---PMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 220 ~~~~~~iv~aGaIp~Lv~lL~s~---~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
....|-..|-+++.+.-+.-| .|.+-.+..|+.-||+.+-++
T Consensus 439 --va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~ 483 (858)
T COG5215 439 --VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAK 483 (858)
T ss_pred --HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhh
Confidence 233344566667666655433 467778899999999975433
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=4.2 Score=42.57 Aligned_cols=55 Identities=29% Similarity=0.265 Sum_probs=42.5
Q ss_pred cHHHHHHhc--ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 534 MIVPLVKLL--DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 534 ~I~pLV~LL--~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
.||-|.+.| .+.++.|+.||+.||+..+.. .+++.|...+...++.+.+....+|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---------------~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADE---------------DCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---------------HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 599999998 366889999999999988733 3677888888888886766544444
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.38 E-value=6.1 Score=46.60 Aligned_cols=182 Identities=18% Similarity=0.177 Sum_probs=112.8
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHh
Q 037612 444 SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523 (663)
Q Consensus 444 sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~L 523 (663)
++.+|.|-.+|++....||.|+..-+.-|+....+-...|.= ....=.|++++.+..-+....+..++|++
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW---------MRIcfeLlelLkahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW---------MRICFELLELLKAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 345778888899999999999999998887544322111110 11223478888888889999999999999
Q ss_pred hhchhhHhhccHHHHHHhcc--cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 037612 524 ARTFKATETRMIVPLVKLLD--EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALV 601 (663)
Q Consensus 524 a~~~~~~e~~~I~pLV~LL~--~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 601 (663)
|+.....+ ++..|++=|. ++...|....++|+..-.|+. ...+|.|++=-+.++..+|--.+-
T Consensus 953 akaIGPqd--VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------------FtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen 953 AKAIGPQD--VLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------------FTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred HHhcCHHH--HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------------hhhhHHHHhhccCchhHHHHhHHH
Confidence 96444333 3333333332 222223333444443333433 236788888788888888888888
Q ss_pred HHHHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHh
Q 037612 602 LLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLEL 653 (663)
Q Consensus 602 ~L~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~ 653 (663)
+||.+-.-.++...=.=..+.|.|+-+ .+-.|+..++++..+..|+.+
T Consensus 1018 alsf~FeyigemskdYiyav~PlleDA----lmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1018 ALSFMFEYIGEMSKDYIYAVTPLLEDA----LMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHHHhhhHHHHhhHHHHHh----hccccHHHHHHHHHHHHHHhc
Confidence 888774333332221113456666633 333456677888888888876
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.32 E-value=3.7 Score=47.38 Aligned_cols=115 Identities=22% Similarity=0.173 Sum_probs=81.4
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh--hhHHHHHhcCChHHHHHhhccCChHHHH---HHHHHHHHhcC
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDND--RYGKLIIEEGGVGPLLKLVKEGKPEGQE---NAARAIGLLGR 218 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~--~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~---~Aa~AL~nLs~ 218 (663)
..++|...+.+|++ .++.+|++||...++|+..=. .--+.+...|.| |.+-|.+..++.-- +|..++.+.-.
T Consensus 602 l~~ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 602 LSMIVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred hHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 34567788889999 999999999999999874311 002333344444 56666666676554 44455544444
Q ss_pred CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh
Q 037612 219 DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 219 ~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
...-+.-| .|.+|.|.-+|++....++++....++.++.++|+
T Consensus 679 ~~~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe 721 (975)
T COG5181 679 FRSMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPE 721 (975)
T ss_pred ccccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc
Confidence 33333334 68999999999999999999999999999987776
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=6 Score=46.13 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=46.1
Q ss_pred cchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccC
Q 037612 510 SDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACS 563 (663)
Q Consensus 510 ~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~ 563 (663)
-++.+.++.+++.||.+.+.-..+.+--||+++.+...+|+..|..+|..++..
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999876654456799999999999999999999999998743
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.1 Score=51.94 Aligned_cols=112 Identities=11% Similarity=0.106 Sum_probs=75.0
Q ss_pred hHhHHHH-HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-C--
Q 037612 144 ILCLIWE-QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-D-- 219 (663)
Q Consensus 144 i~~~v~~-li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~-- 219 (663)
.+-.+|. ++..... ++..+|..|+..|..|..... --+. .....+++|+..+..++..|...++-.+. .
T Consensus 195 d~~~~~~~l~~~~~~-~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 195 DREHAARGLIYLEHD-QDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred cHHHHHHHHHHHhcC-CCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 3445555 5556566 788888888888888765322 1122 35678889988888888888666655552 2
Q ss_pred ---C-cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh
Q 037612 220 ---P-ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 220 ---~-~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
. .+..++++ .+...+.+.+++.+-.|+..|+.+|+.+-..+++
T Consensus 268 ~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 268 PLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred cccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 1 12333433 3677777888888889999999999988765433
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.16 Score=35.22 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred cHHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 534 MIVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 534 ~I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
++|.++++|++.+++|+..|+.+|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999986
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.61 Score=54.67 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=104.6
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHh
Q 037612 444 SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523 (663)
Q Consensus 444 sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~L 523 (663)
+.-.+.+++...+.+-++|+-+=-=|++.+. ..|+... ..+..+++=.+++++.+..-|++..|++
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~---~~P~~a~-----------~avnt~~kD~~d~np~iR~lAlrtm~~l 113 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAK---GKPDLAI-----------LAVNTFLKDCEDPNPLIRALALRTMGCL 113 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhc---cCchHHH-----------hhhhhhhccCCCCCHHHHHHHhhceeeE
Confidence 4456677777788888888877666776653 2444332 3344444444445566777777766665
Q ss_pred hhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 524 ARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 524 a~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
- +...-...+.||.+.|.+.++++++-|+....++-. .+.....+.|=+..|..|+...++.+..+|+.+|
T Consensus 114 ~--v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-------~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL 184 (734)
T KOG1061|consen 114 R--VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-------IDPDLVEDSGLVDALKDLLSDSNPMVVANALAAL 184 (734)
T ss_pred e--ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc-------CChhhccccchhHHHHHHhcCCCchHHHHHHHHH
Confidence 3 333334579999999999999999999999999943 2344566788889999999988988888999999
Q ss_pred HHHhcCCCC
Q 037612 604 CYIALHVPD 612 (663)
Q Consensus 604 ~~la~~~~~ 612 (663)
..+....++
T Consensus 185 ~eI~e~~~~ 193 (734)
T KOG1061|consen 185 SEIHESHPS 193 (734)
T ss_pred HHHHHhCCC
Confidence 999755543
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.03 E-value=24 Score=40.83 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL 239 (663)
..+.|..|..+.-.+.+.-+.+... -.+|+++.=+.+..-+.+..++..|+.|+......-...-...||.+.+.|
T Consensus 229 ~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 229 INKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred chhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH
Confidence 4556666655555544322222111 136666666655567889999999999997777777777788999999999
Q ss_pred ccCChhHHHHHHHHHHHHhcC--ChhHHHHHHhCCcHHHHHHHhccC
Q 037612 240 KEGPMKVQAVVAWAVSELAGN--YPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 240 ~s~~~~vq~~Aa~aL~nLA~~--~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
.+.++++++.+-.+|-++... +++.+. .+|.|++-+...
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l~dp 345 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDALADP 345 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHhcCc
Confidence 999999999999999999862 333322 347777766533
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.5 Score=49.62 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=106.1
Q ss_pred CCCCcccchhhHhHHHHHHH--------HhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----
Q 037612 134 GLPPIAANEPILCLIWEQVA--------ILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG---- 201 (663)
Q Consensus 134 ~~p~ia~~~~i~~~v~~li~--------~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg---- 201 (663)
++.++...+.+..+++ .+ .... .+.+....|..+|.|+.-.++..|...++.|+.+.|++.|+..
T Consensus 14 ~~~~l~~~~~l~~L~~--~a~l~~~~~~~~~~-~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~ 90 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLK--HAGLSESDEDEFES-PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS 90 (446)
T ss_pred cchhhccHHHHHHHHH--hcCCcccccccccC-CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence 4446666666655544 22 2334 5778899999999999998999999999999999999999987
Q ss_pred -ChHHHHHHHHHHHHhcC-CCcchHHHHH-cCchHHHHHhhccC-----------------ChhHHHHHHHHHHHHhcCC
Q 037612 202 -KPEGQENAARAIGLLGR-DPESVEHMIH-SGVCLVFAKILKEG-----------------PMKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 202 -~~~~q~~Aa~AL~nLs~-~~~~~~~iv~-aGaIp~Lv~lL~s~-----------------~~~vq~~Aa~aL~nLA~~~ 261 (663)
+.+.+....+-|+-++. ..+.+..+++ .+++..+++.|... +......+...++|+..+.
T Consensus 91 ~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~ 170 (446)
T PF10165_consen 91 QPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY 170 (446)
T ss_pred CChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 68899999999999995 5677777775 48999888877410 2234556677889998655
Q ss_pred hhHHHHHHhCCcHHHHHHHhc
Q 037612 262 PKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 262 ~~~r~~i~~~g~I~~LV~LL~ 282 (663)
+.... =.....++.|+.+|.
T Consensus 171 ~~~~~-~~~~~~~~~l~~il~ 190 (446)
T PF10165_consen 171 PKSVP-EEFSPSIPHLVSILR 190 (446)
T ss_pred Ccccc-hhhhHHHHHHHHHHH
Confidence 44333 123456788877765
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.66 Score=45.55 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=71.9
Q ss_pred cchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCH-HHHHHHH
Q 037612 510 SDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGA-KHLVQLV 588 (663)
Q Consensus 510 ~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi-~~Lv~LL 588 (663)
+.++..++.++|-|+.-+++.-...+|.+...|++.++.|++.|...|+++...+ +... .|-+ ..++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik~--------k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIKV--------KGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-ceee--------hhhhhHHHHHHH
Confidence 4566778889999988888766678999999999999999999999999998654 2221 2223 6777788
Q ss_pred hcCChhHHHHHHHHHHHHhcC
Q 037612 589 YFGEQIVQLSALVLLCYIALH 609 (663)
Q Consensus 589 ~~~~~~~q~~Al~~L~~la~~ 609 (663)
...++.++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 888888888899888888655
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.27 Score=34.02 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=25.6
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 232 CLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 232 Ip~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
+|.|+++|++++++|+..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999985
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.26 E-value=7.2 Score=47.20 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC
Q 037612 512 LLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG 591 (663)
Q Consensus 512 l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~ 591 (663)
...-.++.||-|.-.-+ ...+|.|=..++++.+..+.-+.-|+ +|.-++. +.-.+ .....-|.-...+++.+
T Consensus 948 tR~vvAECLGkL~l~ep---esLlpkL~~~~~S~a~~~rs~vvsav-Kfsisd~---p~~id-~~lk~~ig~fl~~~~dp 1019 (1233)
T KOG1824|consen 948 TRNVVAECLGKLVLIEP---ESLLPKLKLLLRSEASNTRSSVVSAV-KFSISDQ---PQPID-PLLKQQIGDFLKLLRDP 1019 (1233)
T ss_pred hHHHHHHHhhhHHhCCh---HHHHHHHHHHhcCCCcchhhhhhhee-eeeecCC---CCccC-HHHHHHHHHHHHHHhCC
Confidence 33444444554443221 13577777777777776666555554 4543331 11122 33445667788899999
Q ss_pred ChhHHHHHHHHHHHHhcCCCC
Q 037612 592 EQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 592 ~~~~q~~Al~~L~~la~~~~~ 612 (663)
|..+...|+.++--.+.|-|.
T Consensus 1020 Dl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 1020 DLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred chhHHHHHHHHHHHHHccCHh
Confidence 998877799988777666665
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.18 E-value=7.5 Score=44.99 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=83.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchh
Q 037612 449 CFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK 528 (663)
Q Consensus 449 ~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~ 528 (663)
-|+.+|++.+.+++.+|.-++..|+..- -| +.|.+.|+.=++..+-.+.....-||+-.|..-.
T Consensus 734 eLvd~Lks~nKeiRR~A~~tfG~Is~ai-----------GP-----qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg 797 (975)
T COG5181 734 ELVDSLKSWNKEIRRNATETFGCISRAI-----------GP-----QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG 797 (975)
T ss_pred HHHHHHHHhhHHHHHhhhhhhhhHHhhc-----------CH-----HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC
Confidence 5778889999999999999999886332 12 3456666666655544444444445555553200
Q ss_pred hHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH-HHhcCChhHHHHHHHHHHHHh
Q 037612 529 ATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ-LVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 529 ~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~-LL~~~~~~~q~~Al~~L~~la 607 (663)
. -.++|.|..=-...+..|+.-...|++-+- .|.+...-+++. .|.||+. -|...|+.-..-|...+..++
T Consensus 798 p--fsVlP~lm~dY~TPe~nVQnGvLkam~fmF---eyig~~s~dYvy---~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 798 P--FSVLPTLMSDYETPEANVQNGVLKAMCFMF---EYIGQASLDYVY---SITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred c--hhhHHHHHhcccCchhHHHHhHHHHHHHHH---HHHHHHHHHHHH---HhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 0 125777766667777788887888877663 121211122343 3555553 455556643334777777777
Q ss_pred cCCCC
Q 037612 608 LHVPD 612 (663)
Q Consensus 608 ~~~~~ 612 (663)
+|.+-
T Consensus 870 Lnc~g 874 (975)
T COG5181 870 LNCPG 874 (975)
T ss_pred cCCCC
Confidence 77654
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.6 Score=51.52 Aligned_cols=151 Identities=23% Similarity=0.339 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHh----hhcCCCCchh
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRR----SAFKPNAPAC 494 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr----~a~~~~~~a~ 494 (663)
+.-.+|.+.|++|-.+ . ......+|++||++.. ++|+- .|.+|+-....++.+.. +.|...+-..
T Consensus 303 VVmA~aql~y~lAP~~-~------~~~i~kaLvrLLrs~~-~vqyv---vL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~ 371 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKN-Q------VTKIAKALVRLLRSNR-EVQYV---VLQNIATISIKRPTLFEPHLKSFFVRSSDPT 371 (968)
T ss_pred HHHHHHhHHHhhCCHH-H------HHHHHHHHHHHHhcCC-cchhh---hHHHHHHHHhcchhhhhhhhhceEeecCCHH
Confidence 3567889999999643 2 2334678999998755 66663 34444433443443321 1222111100
Q ss_pred --H-----------------hHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHH
Q 037612 495 --K-----------------AVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASI 555 (663)
Q Consensus 495 --~-----------------~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~ 555 (663)
| -+...++.-|.+.|-++-..+++|||-+|........-.+..||.||++.+..|-.+|+.
T Consensus 372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~ 451 (968)
T KOG1060|consen 372 QVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVV 451 (968)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHH
Confidence 1 122334445555555677899999999998888777788999999999999999999999
Q ss_pred HHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHh
Q 037612 556 ALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVY 589 (663)
Q Consensus 556 AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~ 589 (663)
.+-.+...+- .+|-+. |..|.+|+.
T Consensus 452 vIk~Llq~~p---~~h~~i------i~~La~lld 476 (968)
T KOG1060|consen 452 VIKRLLQKDP---AEHLEI------LFQLARLLD 476 (968)
T ss_pred HHHHHHhhCh---HHHHHH------HHHHHHHhh
Confidence 9999975442 344333 335556553
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.1 Score=39.87 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=50.4
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH--HcCchHHHHHhhccCChhHHHHHHHHHHHH
Q 037612 189 GGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI--HSGVCLVFAKILKEGPMKVQAVVAWAVSEL 257 (663)
Q Consensus 189 G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv--~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nL 257 (663)
-.|||++.++...+.+++..|..+|+||+... +..+. =......|.+++.+.++.||..| +.|-+|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 36899999999999999999999999999633 23333 24577788888888888886544 666554
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.06 E-value=8.1 Score=47.21 Aligned_cols=187 Identities=13% Similarity=0.087 Sum_probs=135.6
Q ss_pred hcCcccccceecccccHHHHHHHHHhhhcchHHHHhhccccCCCC-ccccCCCCcccchhhHhHHHHHHHHhccCCCHHH
Q 037612 85 ANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLRVSASAEDRD-DEYLGLPPIAANEPILCLIWEQVAILYTAGSLEH 163 (663)
Q Consensus 85 ~~~~~~r~~~i~~~~~l~~l~~~L~~~~~~~~~ll~~s~~~~~~~-~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~ 163 (663)
++|...|. |..-+|-+++-|-+..+.+-+|.=++.-.+-+. +... |-.=+|-++ .+.+||+ ...|-
T Consensus 462 d~gse~r~----PPeQLPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~L-----aLsVGIFPY---VLKLLQS-~a~EL 528 (1387)
T KOG1517|consen 462 DYGSESRT----PPEQLPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDL-----ALSVGIFPY---VLKLLQS-SAREL 528 (1387)
T ss_pred HhccccCC----ChHhcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhh-----hhccchHHH---HHHHhcc-chHhh
Confidence 44555554 788888888888777777666543443333221 1111 111123333 3678899 88888
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CC--hHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHHhh
Q 037612 164 KSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE-GK--PEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKIL 239 (663)
Q Consensus 164 k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s-g~--~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~lL 239 (663)
|---+..=..+...++.++..+++++|=.-++..|.. +. ++.+--||..|..+.. ++-....-.+.+.|..-.+.|
T Consensus 529 rpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~l 608 (1387)
T KOG1517|consen 529 RPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHL 608 (1387)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHh
Confidence 8655444444333457888889999998889999987 33 4788899999999995 567788888999999999999
Q ss_pred ccC-ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccC
Q 037612 240 KEG-PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 240 ~s~-~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
.++ .+-++.-.+-+|+.|=.+.+++|=...+.++..-|+.+|+..
T Consensus 609 nd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~ 654 (1387)
T KOG1517|consen 609 NDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP 654 (1387)
T ss_pred cCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc
Confidence 886 578888899999999999999999889999999999999754
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.3 Score=50.11 Aligned_cols=113 Identities=20% Similarity=0.222 Sum_probs=87.2
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHhh---------c-cCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHH
Q 037612 169 ASLVSLARDNDRYGKLIIEEGGVGPLLKLV---------K-EGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAK 237 (663)
Q Consensus 169 ~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL---------~-sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~ 237 (663)
.+|.-|+++ +.+..-|....++..|+++- . ..+..+..+|.++|.|+-- ++.-++..++.|..+.+++
T Consensus 3 ~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 3 ETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 455666665 44566666666677776665 2 3357899999999999995 6677888889999999999
Q ss_pred hhccC-----ChhHHHHHHHHHHHHhcCChhHHHHHHh-CCcHHHHHHHhc
Q 037612 238 ILKEG-----PMKVQAVVAWAVSELAGNYPKCQDLFAQ-HNIIRLLVGHLA 282 (663)
Q Consensus 238 lL~s~-----~~~vq~~Aa~aL~nLA~~~~~~r~~i~~-~g~I~~LV~LL~ 282 (663)
.|+.. +.+++-.....|+-++...+..+..+.+ .+++..|+..|.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~ 132 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALE 132 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHH
Confidence 99876 6888888999999998777777755554 588888888775
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=89.72 E-value=16 Score=40.51 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=48.8
Q ss_pred cchHHHHH-cCchHHHHHhhccCC---hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc
Q 037612 221 ESVEHMIH-SGVCLVFAKILKEGP---MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 221 ~~~~~iv~-aGaIp~Lv~lL~s~~---~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~ 282 (663)
+.-+-+++ .--...|-.+++... +.+-..|+..+..+-.++|.+-..+.+.|.++.+++-+.
T Consensus 96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 33444666 445666777777643 678889999999999999999999999999999988776
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=89.50 E-value=3.3 Score=40.21 Aligned_cols=111 Identities=21% Similarity=0.174 Sum_probs=89.0
Q ss_pred HHHHhcCChHHHHHhhccCCh------HHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccC--ChhHHHHHHHHH
Q 037612 183 KLIIEEGGVGPLLKLVKEGKP------EGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEG--PMKVQAVVAWAV 254 (663)
Q Consensus 183 ~~Ive~G~Ip~Lv~LL~sg~~------~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~--~~~vq~~Aa~aL 254 (663)
...+..||++.|++++++|+. +....+..|...|--+....+..++.-.|.-.+...... +..+...+...|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 456778999999999999873 566778888888887777778888888888888888754 478889999999
Q ss_pred HHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHH
Q 037612 255 SELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAI 294 (663)
Q Consensus 255 ~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v 294 (663)
-++..+++.....+.++=-++.|+.+|... .++.+.+++
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~nai 123 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAI 123 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHH
Confidence 999988888788888887899999999874 344444433
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.9 Score=36.48 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 037612 206 QENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHN 272 (663)
Q Consensus 206 q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g 272 (663)
.+.|.||+++++..+..-..+-+.+.|+.++++-.+ +...++.-+-.+|+-++. ..+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 578999999999988888888889999999999964 668999999999999996 567777776665
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=87.24 E-value=3.3 Score=40.64 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCch-HHHHHh
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVC-LVFAKI 238 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaI-p~Lv~l 238 (663)
++..|.++..+++.|+.--+. ++ +..+|.+...|+++++.+++.|..+|..|-..+-.+.. |-+ ..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 356889999999999864332 33 46799999999999999999999999999864333222 344 778888
Q ss_pred hccCChhHHHHHHHHHHHHhcC
Q 037612 239 LKEGPMKVQAVVAWAVSELAGN 260 (663)
Q Consensus 239 L~s~~~~vq~~Aa~aL~nLA~~ 260 (663)
|.+.+++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999864
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=87.20 E-value=1.7 Score=40.22 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=56.8
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhc
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLG 217 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs 217 (663)
-+++.|+.+|....+...-.-|+.=|+.+++.-+.-|..|-+.|+=..+.+|+.+++++++.+|..|+..|-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 456778888854135556667888899999988887887778899999999999999999999999998764
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=86.86 E-value=5.5 Score=38.44 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=83.1
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-----
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT----- 530 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~----- 530 (663)
...++++..+..++..+-..+. .+ |+ +.+-+.+-..+.+++.+-...++.++..|=......
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~--~~-----~~------~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAR--EE-----FK------EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHH--HH-----HH------HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred CCCHhHHHHHHHHHHHHHHHhH--HH-----HH------HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456777777777765521111 11 11 223445556666666666666666666653332221
Q ss_pred -hhccHHHHHHhcc--cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-Chh-HHHHHHHHHHH
Q 037612 531 -ETRMIVPLVKLLD--EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQI-VQLSALVLLCY 605 (663)
Q Consensus 531 -e~~~I~pLV~LL~--~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~-~q~~Al~~L~~ 605 (663)
..+.++-++.+.+ ..+..++..++.+|..-|.+ +.++..+...|++.|-.+++.+ ++. +++.|+..||-
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d------~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACID------KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS------HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 2467888888888 77888888888888776644 4577777788999999999644 565 68888888874
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=86.62 E-value=4.9 Score=42.11 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHH
Q 037612 203 PEGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGH 280 (663)
Q Consensus 203 ~~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~L 280 (663)
......|...|..++ .++..+....+..++..|+++|. +..+.++..+..+|..+--++|.+...|.+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 344667888999998 58999999999999999999994 4668888888888888777788999999999999999999
Q ss_pred hccCcc
Q 037612 281 LAFETV 286 (663)
Q Consensus 281 L~sgt~ 286 (663)
+++...
T Consensus 185 lk~~~~ 190 (257)
T PF08045_consen 185 LKSKST 190 (257)
T ss_pred Hccccc
Confidence 997754
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.61 E-value=46 Score=35.09 Aligned_cols=61 Identities=28% Similarity=0.448 Sum_probs=44.0
Q ss_pred cCChHHHHHhhccCC--hHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 188 EGGVGPLLKLVKEGK--PEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~--~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
+.+||.|+..|...+ +-++..|+.||+++. +++ .++.|-+..+++...|++-+..|+..+-
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 346889998887543 677888999998877 433 3455666666777788887777777775
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.92 E-value=85 Score=37.47 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=100.7
Q ss_pred cCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHH
Q 037612 133 LGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARA 212 (663)
Q Consensus 133 ~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~A 212 (663)
.|+..|..-+-.+-+..|++.+|.+ ..+-.|..|.-.|+.+- -.|-+.+. ..+|.|++=|+.+++.+|-.|+..
T Consensus 131 ~GLS~fvTpdLARDLa~Dv~tLL~s-skpYvRKkAIl~lykvF---LkYPeAlr--~~FprL~EkLeDpDp~V~SAAV~V 204 (877)
T KOG1059|consen 131 SGLSCIVTPDLARDLADDVFTLLNS-SKPYVRKKAILLLYKVF---LKYPEALR--PCFPRLVEKLEDPDPSVVSAAVSV 204 (877)
T ss_pred cccccccCchhhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHH---HhhhHhHh--hhHHHHHHhccCCCchHHHHHHHH
Confidence 3555666666677788899999999 88899999988888765 34555553 689999999999999999999999
Q ss_pred HHHhcC-CCcchHHHHHcCchHHHHHhhccCC-hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhcc
Q 037612 213 IGLLGR-DPESVEHMIHSGVCLVFAKILKEGP-MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAF 283 (663)
Q Consensus 213 L~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s~~-~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~s 283 (663)
++.||. +|.|--.+ -|.|.++|-+.+ -=+.....-..++|+--.|.-.. -.|+||.+|+.+
T Consensus 205 ICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~s 267 (877)
T KOG1059|consen 205 ICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMES 267 (877)
T ss_pred HHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHh
Confidence 999994 88887655 488999996543 22333444455666655555433 367999999965
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=85.63 E-value=4.2 Score=36.19 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=47.1
Q ss_pred HhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh----hccHHHHHHhcccCCHHHHHHH
Q 037612 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE----TRMIVPLVKLLDEREAEVSREA 553 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e----~~~I~pLV~LL~~~~~~v~~eA 553 (663)
+..+++++..+.+.|..+...+|++|.++++.+...- ..+..-|.+++.+.++.|+..|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 3478889999999999999999999999998766421 2467777888888888887665
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=85.54 E-value=5.8 Score=43.82 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHh
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKI 238 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~l 238 (663)
.....|++|..-+..+...... .+. +-.|.+..+|.+.+..++..+.-+..+|..|+. -+.+.++++||+.+|++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~-~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l--~~P~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKG-PKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELAL--LNPELVAECGGIRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCC-ccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh--hCHHHHHHcCCHHHHHHH
Confidence 3567888887766666544211 111 246788999999998889999999999999996 456678899999999999
Q ss_pred hccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHH
Q 037612 239 LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279 (663)
Q Consensus 239 L~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~ 279 (663)
+-+|..++.+..+.++.++-. +|..|..+...--+..|+.
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~a 195 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLA 195 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHH
Confidence 998877788889999999984 7899988765444555444
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.14 E-value=2 Score=48.77 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=90.9
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhh
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDH 571 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~ 571 (663)
+++.|++++..++..+..++..++-|..--|.+. ++++|..|+.++.+.+...+....|.|..+.-+ +.++
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn----cq~~ 507 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN----CQKN 507 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc----Ccch
Confidence 7788999999988888889989998988888774 467899999999999999999999999988522 2333
Q ss_pred HH-HHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 572 SK-AIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 572 ~~-~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
.+ .....-|+..++.+-..++-++|..-+-.|.|+..+..
T Consensus 508 ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 508 EKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred hhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccc
Confidence 33 35667789999999888888899999999999976543
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=85.12 E-value=6.7 Score=38.19 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=73.1
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhcc---------CChHHHHHHHHHHHHhcCCC
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLAR-DNDRYGKLIIEEGGVGPLLKLVKE---------GKPEGQENAARAIGLLGRDP 220 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~G~Ip~Lv~LL~s---------g~~~~q~~Aa~AL~nLs~~~ 220 (663)
+|..|+. +.... .-...|...-+ .+....+..++.||+..|+++|.. .+...+.....||..|..+.
T Consensus 71 ~i~~L~~-~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~ 147 (187)
T PF06371_consen 71 YIKKLKS-RPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK 147 (187)
T ss_dssp HHHHHTT-T--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHc-cCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH
Confidence 4677777 65443 22222222222 233445667789999999999953 12478889999999999887
Q ss_pred cchHHHH-HcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 221 ESVEHMI-HSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 221 ~~~~~iv-~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
.....++ ..++|..|+..|.+.+..++..+...|+.++
T Consensus 148 ~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 148 YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 7777776 5899999999999999999999999998876
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=85.07 E-value=1.9 Score=39.92 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=53.5
Q ss_pred hccHHHHHHhc-ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 532 TRMIVPLVKLL-DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 532 ~~~I~pLV~LL-~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
-.++.-|+++| .+.++.+..-|+.=|+.|+.. +++....|-+.||-..+++|+.++++.++..|+.++--+.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~----~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH----YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHH----ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35799999999 455666666788888999743 4565555666777777789999999999999999886553
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.03 E-value=84 Score=36.63 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=79.0
Q ss_pred HhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-Hh
Q 037612 453 LLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-TE 531 (663)
Q Consensus 453 LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-~e 531 (663)
|+..|.-+.|.+..-||+.+ -+..|+.+. ...+.|...|+ |-+....+++-||-|.+.-+. .+
T Consensus 421 L~~eGg~eFK~~~Vdaisd~---~~~~p~skE-----------raLe~LC~fIE--Dcey~~I~vrIL~iLG~EgP~a~~ 484 (898)
T COG5240 421 LLQEGGLEFKKYMVDAISDA---MENDPDSKE-----------RALEVLCTFIE--DCEYHQITVRILGILGREGPRAKT 484 (898)
T ss_pred HHhcccchHHHHHHHHHHHH---HhhCchHHH-----------HHHHHHHHHHh--hcchhHHHHHHHHHhcccCCCCCC
Confidence 34455568888888887654 344555443 23455667775 344455566777777764332 22
Q ss_pred -hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 532 -TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 532 -~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
.+.|..+..-+-=.+.-|+..|..||++|+-+-+-. ....-..-.|-+.|...|..+...|..+|-++
T Consensus 485 P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~-------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 485 PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV-------VSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc-------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 234555554443355668888999999998543311 11122233556677777777888888888777
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.76 E-value=2.1 Score=48.64 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCc--chHHHHHcCchHHHHHhhccCC
Q 037612 166 DAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE--SVEHMIHSGVCLVFAKILKEGP 243 (663)
Q Consensus 166 ~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~--~~~~iv~aGaIp~Lv~lL~s~~ 243 (663)
-+...+.|+...-..-+.-..+.|.|..|++++.+-+...|.+..|.|.++--+.+ .+-.....-++..++++..++.
T Consensus 450 ~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc 529 (743)
T COG5369 450 PDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC 529 (743)
T ss_pred cchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc
Confidence 33444555444333446677888999999999998889999999999999995443 3556677788999999999999
Q ss_pred hhHHHHHHHHHHHHhcC
Q 037612 244 MKVQAVVAWAVSELAGN 260 (663)
Q Consensus 244 ~~vq~~Aa~aL~nLA~~ 260 (663)
-.||++.-..|.|+..+
T Consensus 530 ~~vq~q~lQilrNftc~ 546 (743)
T COG5369 530 FKVQHQVLQILRNFTCD 546 (743)
T ss_pred cccHHHHHHHHHhcccc
Confidence 99999999999999874
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=84.51 E-value=2 Score=41.50 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=71.6
Q ss_pred HhccCCCHHHHHHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHhhc--cCChHHHHHHHHHHHHhcCCCcchHHHHHcC
Q 037612 154 ILYTAGSLEHKSDAAASLVSLARDNDRYGKLII-EEGGVGPLLKLVK--EGKPEGQENAARAIGLLGRDPESVEHMIHSG 230 (663)
Q Consensus 154 ~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Iv-e~G~Ip~Lv~LL~--sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG 230 (663)
++.. ++.+.+..+..+|..|=-..+.-...|. .+|.++.++.+.. +.+...|..++.+| +-|..+++++..+...
T Consensus 51 ~~~~-~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell-~aAc~d~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDE-GEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELL-SAACIDKSCRTFISKN 128 (157)
T ss_dssp HHCC-HHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHH-HHHTTSHHHHHCCHHH
T ss_pred HHcc-ccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHH-HHHHccHHHHHHHHHH
Confidence 4455 5666788887777777655555555554 6788999999998 55677777777776 5566667777777777
Q ss_pred chHHHHHhhcc-CChh-HHHHHHHHHHH
Q 037612 231 VCLVFAKILKE-GPMK-VQAVVAWAVSE 256 (663)
Q Consensus 231 aIp~Lv~lL~s-~~~~-vq~~Aa~aL~n 256 (663)
+++.|-++++. .+.. ++..|+-+|..
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 89999999964 4455 78888877764
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots | Back alignment and domain information |
|---|
Probab=84.48 E-value=4 Score=39.19 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=65.2
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhcC
Q 037612 14 QLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYERPTRRIIDDTEQVLEKALSLVIKYRANG 87 (663)
Q Consensus 14 ~l~~~v~~~~~~~~~f~~~~~~i~~k~~~l~~~L~~~~~~~~~~~~~p~~~l~~~~~~tl~~a~~l~~~C~~~~ 87 (663)
+|.+.|+.++..+..|+.-...+.+-++.|.-...+.-... +.-++|-++.+....++++++..|+.+|.+.+
T Consensus 17 eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~-~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~ 89 (147)
T PF05659_consen 17 ELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLN-VELDRPRQEEIERLKELLEKGKELVEKCSKVR 89 (147)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHh-hhcCCchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 56788999999999999999999999999998888877776 67788879999999999999999999998765
|
Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif []. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.19 E-value=16 Score=42.85 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=112.5
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 037612 446 ALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR 525 (663)
Q Consensus 446 al~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~ 525 (663)
.++.|+.+|.+.+...++-|-.||..|+... ++.-.+.+- +.| ....++.+++++++.++.+...++ +|+-.
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs---a~~lds~~~-~rp-l~~mipkfl~f~~h~spkiRs~A~---~cvNq 200 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDS---AQFLDSDVL-TRP-LNIMIPKFLQFFKHPSPKIRSHAV---GCVNQ 200 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhh---HHHHhhhcc-cCc-hHHhHHHHHHHHhCCChhHHHHHH---hhhhh
Confidence 5789999999999999999999999998443 343333232 223 346788899999999888876654 44432
Q ss_pred ch-------hhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH-cCCHHHHHHHHhcCChhHHH
Q 037612 526 TF-------KATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIIS-AGGAKHLVQLVYFGEQIVQL 597 (663)
Q Consensus 526 ~~-------~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~-~ggi~~Lv~LL~~~~~~~q~ 597 (663)
-. -..-...+.-|..|-.+.+++|++..+.||.-+.-. +++ +.+-. .+-|+.+.+.-+..++.+-.
T Consensus 201 ~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev----r~d--kl~phl~~IveyML~~tqd~dE~VAL 274 (885)
T KOG2023|consen 201 FIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV----RPD--KLVPHLDNIVEYMLQRTQDVDENVAL 274 (885)
T ss_pred eeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh----cHH--hcccchHHHHHHHHHHccCcchhHHH
Confidence 11 111123577788888999999999999999888521 111 11111 12344566666666776777
Q ss_pred HHHHHHHHHhcCCCChHHHHhc---cchhhhhhccccc
Q 037612 598 SALVLLCYIALHVPDSEDLAQA---EVLTVLEWTSKQS 632 (663)
Q Consensus 598 ~Al~~L~~la~~~~~~~~i~~~---~vl~~L~~~~~~~ 632 (663)
.|.....-+|.+. .-+++.+. ..+|+|..+..+.
T Consensus 275 EACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ys 311 (885)
T KOG2023|consen 275 EACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYS 311 (885)
T ss_pred HHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccc
Confidence 7888777776655 54444433 5788886544443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=83.22 E-value=21 Score=38.46 Aligned_cols=132 Identities=25% Similarity=0.263 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhc--CChhhhHHHhhhccHHHHHHHhhcCCh--hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhH
Q 037612 420 KAMAARALWHLAK--GNSPICRSITESRALLCFAVLLEKGPE--DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACK 495 (663)
Q Consensus 420 k~~Aa~AL~~La~--gn~~~~~~I~esgal~~L~~LL~~~~~--~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~ 495 (663)
+.-|++++.-|+- |.......|.+ ...+.|.+.+..+.. .++..|+.||.-++-....+.+--.. +.
T Consensus 103 ~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~--------~~ 173 (309)
T PF05004_consen 103 QALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE--------LM 173 (309)
T ss_pred HHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH--------HH
Confidence 4455555544443 43345555554 356788888887654 45556677777665444333221110 00
Q ss_pred hHHHHHHHHh-hhc-----------CcchhhHHHHHHHHhhhchhhH--h---hccHHHHHHhcccCCHHHHHHHHHHHH
Q 037612 496 AVVDQLFRII-EKA-----------DSDLLIPCIKAVGNLARTFKAT--E---TRMIVPLVKLLDEREAEVSREASIALT 558 (663)
Q Consensus 496 ~vv~qL~~ll-~~~-----------~~~l~~~a~~aLg~La~~~~~~--e---~~~I~pLV~LL~~~~~~v~~eAa~AL~ 558 (663)
...+-++.+. .+. ++.+...|+.+-+-|.++.... . ...+|.|+.+|++.+.+|+..|..+|+
T Consensus 174 ~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiA 253 (309)
T PF05004_consen 174 ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIA 253 (309)
T ss_pred HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1222222211 111 1357788888888888776652 1 347999999999999999999998887
Q ss_pred hc
Q 037612 559 KF 560 (663)
Q Consensus 559 ~l 560 (663)
=+
T Consensus 254 ll 255 (309)
T PF05004_consen 254 LL 255 (309)
T ss_pred HH
Confidence 55
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=81.74 E-value=10 Score=40.31 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=81.1
Q ss_pred hHHHHHH-HHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-C-Ccc
Q 037612 146 CLIWEQV-AILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-D-PES 222 (663)
Q Consensus 146 ~~v~~li-~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~-~~~ 222 (663)
.++..+| .-+++ .+...|+.|..+|+-.+--+.+.. ...++.+...++.++..++..|..+|+.|.. + .+.
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455555 47788 899999999999999887644221 2347889999988889999999999999984 2 122
Q ss_pred hHH-------HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 223 VEH-------MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 223 ~~~-------iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
-.. .-....+..|.+.|.+.+++++..++..++.|--
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 111 2234577888888888888999999999999764
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=81.14 E-value=84 Score=33.81 Aligned_cols=115 Identities=24% Similarity=0.271 Sum_probs=79.1
Q ss_pred chhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCChHHHHHhhccCChHHHHHHHHHHHHhcC
Q 037612 141 NEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIE--EGGVGPLLKLVKEGKPEGQENAARAIGLLGR 218 (663)
Q Consensus 141 ~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive--~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~ 218 (663)
.+.+.--+.+.|..|.. .+...|+.|...|..+....- ..+.|-+ .-.+..+.+.++.|+..-+.-|+.++.-|+.
T Consensus 38 ~~~~e~~L~~~Id~l~e-K~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~l 115 (309)
T PF05004_consen 38 QEDLEDKLKEAIDLLTE-KSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLAL 115 (309)
T ss_pred hhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Confidence 44444445677888888 888999999999999875422 2223321 2368899999999987777788888888874
Q ss_pred C---CcchHHHHHcCchHHHHHhhccCChh--HHHHHHHHHHHHh
Q 037612 219 D---PESVEHMIHSGVCLVFAKILKEGPMK--VQAVVAWAVSELA 258 (663)
Q Consensus 219 ~---~~~~~~iv~aGaIp~Lv~lL~s~~~~--vq~~Aa~aL~nLA 258 (663)
. .+....+++ ...|+|.+++.+++.. ++..++.+|+-++
T Consensus 116 tlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~ 159 (309)
T PF05004_consen 116 TLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICT 159 (309)
T ss_pred hcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 3 355566665 4899999999887543 4444554555544
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.22 E-value=1.4e+02 Score=35.73 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=69.9
Q ss_pred ccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCC
Q 037612 533 RMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 533 ~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~~~~q~~Al~~L~~la~~~~ 611 (663)
+.+..|-++|++++..++--|...++++++.+ ++...+..- ...++..|+. .|.-+...|+++|.-+ ..+.
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~------~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~m-cD~~ 400 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSE------FSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAM-CDVS 400 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhcc------chHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHH-hchh
Confidence 45666677888898888888888999998764 233333333 6677888884 4665677799988766 6777
Q ss_pred ChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhh
Q 037612 612 DSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQ 655 (663)
Q Consensus 612 ~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~ 655 (663)
|.+.|++ +.+.-|+-+.- . --+++.-|+-..-|.|-
T Consensus 401 Nak~IV~-elLqYL~tAd~-s------ireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 401 NAKQIVA-ELLQYLETADY-S------IREEIVLKVAILAEKYA 436 (938)
T ss_pred hHHHHHH-HHHHHHhhcch-H------HHHHHHHHHHHHHHHhc
Confidence 7777773 44555552111 1 12456666666666664
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=80.22 E-value=6.8 Score=45.38 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=44.7
Q ss_pred cCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHH
Q 037612 508 ADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587 (663)
Q Consensus 508 ~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~L 587 (663)
+++..+.-|+.=|.--...|+..+...|-.+++|..+.+..|+..|...|-.+|.+. +++...|+ ..|+||
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kva-----DvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVA-----DVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHH-----HHHHHH
Confidence 345555556555555566677666677777777777777778888888877776442 35555544 367777
Q ss_pred HhcCCh
Q 037612 588 VYFGEQ 593 (663)
Q Consensus 588 L~~~~~ 593 (663)
|.+.++
T Consensus 105 L~tdd~ 110 (556)
T PF05918_consen 105 LQTDDP 110 (556)
T ss_dssp TT---H
T ss_pred HhcccH
Confidence 776654
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 663 | ||||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 1e-06 | ||
| 2yns_A | 490 | Rimp_alpha_b54nls Length = 490 | 5e-05 | ||
| 4b8j_A | 528 | Rimp_alpha1a Length = 528 | 5e-05 |
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
| >pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 | Back alignment and structure |
|
| >pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 5e-24
Identities = 71/491 (14%), Positives = 152/491 (30%), Gaps = 53/491 (10%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
V + +E A +L +L+ + I + GG+ L+K++ A
Sbjct: 62 VRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 120
Query: 212 AIG-LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQ 270
+ LL + + +G +L + +K A+ + LA + + +
Sbjct: 121 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 180
Query: 271 HNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQ 330
+ LV + + ++ ++ + + V+ + S+NK E
Sbjct: 181 SGGPQALVNIM-----RTYTYEKLLWTTSRVLKVL----------SVCSSNKPAIVEAGG 225
Query: 331 YHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ-- 388
+L H + + + + N + + + ++ + + N V
Sbjct: 226 MQALGLH-LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 284
Query: 389 --------NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGN---SPI 437
N+ G R + + + A AL HL +
Sbjct: 285 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 344
Query: 438 CRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITA--------VAEKDA-----ELRR 484
++ L LL + + L+ A + E+ A +L
Sbjct: 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404
Query: 485 SAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLART----FKATETRMIVPLVK 540
A + Q + +++ C A+ LAR I V+
Sbjct: 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 464
Query: 541 LLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSAL 600
LL + R A+ L + A + ++AI + G L +L++ + V A
Sbjct: 465 LLYSPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 519
Query: 601 VLLCYIALHVP 611
+L ++ P
Sbjct: 520 AVLFRMSEDKP 530
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 7e-13
Identities = 53/408 (12%), Positives = 110/408 (26%), Gaps = 36/408 (8%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
V I+ T + + L L+ I+E GG+ L + + +N
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246
Query: 212 AIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQH 271
+ L + G+ ++L + V A +S L N K + + Q
Sbjct: 247 TLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 304
Query: 272 NIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQY 331
I LV + +E A+ + T+ +
Sbjct: 305 GGIEALVRTVLRAGDREDIT---------EPAICALRHLTSRHQEAEMAQNAVRLHY--- 352
Query: 332 HSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQ 391
+P + P ++ T+ + + + + + Q
Sbjct: 353 --GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR------LVQLLV 404
Query: 392 SQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFA 451
HQ ++ + + AL LA+ + I + F
Sbjct: 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFV 463
Query: 452 VLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSD 511
LL E++Q +A L E+ D E + A L ++ +
Sbjct: 464 QLLYSPIENIQRVAAGVLCELAQ----DKEAAEAIEAEGA------TAPLTELLHSRNEG 513
Query: 512 LLIPCIKAVGNLARTFKATETRMIV--PLVKLLDEREAEVSREASIAL 557
+ + ++ + + L + A + L
Sbjct: 514 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGL 561
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 31/219 (14%), Positives = 72/219 (32%), Gaps = 22/219 (10%)
Query: 415 TKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITA 474
T + +R L L+ S +I E+ + + L + + N L ++
Sbjct: 195 TYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253
Query: 475 VAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLA-----RTFKA 529
A + ++ L +++ D +++ + NL
Sbjct: 254 AAT------------KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301
Query: 530 TETRMIVPLVKLLDER--EAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587
+ I LV+ + +++ A AL S + A+ G +V+L
Sbjct: 302 CQVGGIEALVRTVLRAGDREDITEPAICALRHL-TSRHQEAEMAQNAVRLHYGLPVVVKL 360
Query: 588 VYFG-EQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625
++ + + + L+ +AL + L + + L
Sbjct: 361 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 399
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 5e-12
Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 3/139 (2%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK-PEGQENAARAIGLLG 217
+ AA + L++ ++ V +++ ++ E A + L
Sbjct: 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 85
Query: 218 RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLL 277
E + + SG K+L V + L + + ++ +
Sbjct: 86 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 145
Query: 278 VGHLAFET--VQEHSKYAI 294
V L + +
Sbjct: 146 VALLNKTNVKFLAITTDCL 164
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 20/224 (8%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
+ A L +L ++ + L LL K + L + A
Sbjct: 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL---AYG 170
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLART----FKATETRM 534
+ E + P +A+V+ + LL + + L+ E
Sbjct: 171 NQESKLIILASGGP--QALVNIMR---TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 225
Query: 535 IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594
+ L L + + + L L +K G LVQL+ +
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLR-------NLSDAATKQEGMEGLLGTLVQLLGSDDIN 278
Query: 595 VQLSALVLLCYIALHVPD-SEDLAQAEVLTVLEWTSKQSHMTQD 637
V A +L + + + Q + L T ++ +D
Sbjct: 279 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 30/231 (12%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG--PEDVQYNSAMALMEITAVA 476
+ AA L +L N + + + + + ED+ + AL +T+
Sbjct: 279 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 338
Query: 477 EKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIP-CIKAVGNLART----FKATE 531
++ + + + + +++ LI + + NLA E
Sbjct: 339 QEAEMAQNAVRLHYG------LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 392
Query: 532 TRMIVPLVKLLDEREAEVSREASIALTKFACSDNY-----------------LHSDHSKA 574
I LV+LL + R S+ T+ + +
Sbjct: 393 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 452
Query: 575 IISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625
I VQL+Y + +Q A +LC +A +E + L
Sbjct: 453 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 503
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 27/214 (12%), Positives = 73/214 (34%), Gaps = 21/214 (9%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPE-DVQYNSAMALMEITAVAE 477
+ AA + L+K + + + + ++ + + +A L ++
Sbjct: 30 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS---- 85
Query: 478 KDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR-----TFKATET 532
E + FK + L +++ +L I + NL
Sbjct: 86 HHREGLLAIFKSGG------IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 139
Query: 533 RMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGE 592
+ +V LL++ + + L A + + I+++GG + LV ++
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ----ESKLIILASGGPQALVNIMRTYT 195
Query: 593 -QIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625
+ + + +L +++ + + +A + L
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 229
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 30/241 (12%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
+ L +L+ + L LL +V +A L +T
Sbjct: 240 LVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC---N 293
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLI--PCIKAVGNLARTFKATETRM-- 534
+ + + + ++ L R + +A I P I A+ +L + E
Sbjct: 294 NYKNKMMVCQVGG------IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 347
Query: 535 ------IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLV 588
+ +VKLL +A++ L + L + + G LVQL+
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA----LCPANHAPLREQGAIPRLVQLL 403
Query: 589 YFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSK----QSHMTQDETVDPLL 644
Q Q + + L ++ + + T+ +
Sbjct: 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 463
Query: 645 Q 645
Q
Sbjct: 464 Q 464
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 1/185 (0%)
Query: 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD 219
E +L LARD +I + ++L+ Q AA + L +D
Sbjct: 429 MEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
Query: 220 PESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279
E+ E + G ++L V A + ++ + P+ + L
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 547
Query: 280 HLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPM 339
+ + + ++ G + + H + H
Sbjct: 548 TEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMGGHHP 607
Query: 340 GNKTP 344
G P
Sbjct: 608 GADYP 612
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 5/114 (4%)
Query: 185 IIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSG--VCLVFAKILKEG 242
+ + L KL+ + AA + L + S ++ S V + +
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 243 PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA--FETVQEHSKYAI 294
++ A + L+ + + + I LV L ++V ++ +
Sbjct: 70 DVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 24/184 (13%)
Query: 441 ITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQ 500
+RA+ LL + V +A+ + +++ + RS +V
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP---------QMVSA 60
Query: 501 LFRIIEKA-DSDLLIPCIKAVGNLARTFKATETRMIV-------PLVKLLDEREAEVSRE 552
+ R ++ D + + NL+ E + + LVK+L V
Sbjct: 61 IVRTMQNTNDVETARCTAGTLHNLSHH---REGLLAIFKSGGIPALVKMLGSPVDSVLFY 117
Query: 553 ASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612
A L A+ AGG + +V L+ L +A +
Sbjct: 118 AITTLHNLLLHQ----EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173
Query: 613 SEDL 616
S+ +
Sbjct: 174 SKLI 177
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 81.5 bits (200), Expect = 3e-16
Identities = 68/442 (15%), Positives = 139/442 (31%), Gaps = 27/442 (6%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+A+L KS+AAA L L ND+ + + G+ L+ L+ K E A
Sbjct: 54 IAMLGF-RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACG 112
Query: 212 AIGLL--GRDPESVEHMIHSGVCLVFAKILKEGP-MKVQAVVAWAVSELAGNYPKCQDLF 268
A+ + GRD ++ + + ++L++ M + V+ + L+ + ++
Sbjct: 113 ALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV 172
Query: 269 AQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTN---NANANGSNNKVID 325
+ + L + + K I V +N N ++ S +
Sbjct: 173 D--HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKL 230
Query: 326 DEDKQYHSLIPHPMGNKTPSQMHN--VVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQD 383
E + + + + + +V N + + + + +
Sbjct: 231 RECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVA 290
Query: 384 NNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSP----ICR 439
NN + ++ L L + + +A A+ +L G I
Sbjct: 291 NNTGTSPARGYEL-LFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS 349
Query: 440 SITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVD 499
++ + +AL A LL E V ++ AL + A + + A
Sbjct: 350 ALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQ 409
Query: 500 QLFRIIEKADSDLLIPCIKAVGNLARTFKAT-----ETRMIVPLVKLL--DEREAEVSRE 552
D +I + + + ET+ I LV + R + R
Sbjct: 410 NSSWNFS---EDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRA 466
Query: 553 ASIALTKFACSDNYLHSDHSKA 574
A++ L L K
Sbjct: 467 AALVLQTI-WGYKELRKPLEKE 487
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-16
Identities = 22/143 (15%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Query: 155 LYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG 214
L ++ + + +A +L ++A + + +I+ G + L++L+ + + A A+
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 215 -LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNI 273
+ E ++ +I +G ++L ++ WA+S +A + + +
Sbjct: 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 223
Query: 274 IRLLVGHLAFET--VQEHSKYAI 294
+ L + E +Q+ ++ A+
Sbjct: 224 LEKLEQLQSHENEKIQKEAQEAL 246
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-15
Identities = 40/193 (20%), Positives = 78/193 (40%), Gaps = 20/193 (10%)
Query: 423 AARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAEL 482
A AL ++A G + +++ ++ AL LL E + + AL I + E
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQ 130
Query: 483 RRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV------ 536
++ A + L +++ + +L + A+ N+A + + ++
Sbjct: 131 IQAVIDAGA------LPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALP 183
Query: 537 PLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQ 596
LV+LL ++ +EA AL+ A N + +A+ AG + L QL + +Q
Sbjct: 184 ALVQLLSSPNEQILQEALWALSNIASGGN----EQKQAVKEAGALEKLEQLQSHENEKIQ 239
Query: 597 LSALVLLCYIALH 609
A L + H
Sbjct: 240 KEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 1/124 (0%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LLG 217
++ + A + D + + +I+ G + L++L+ + + A A+ +
Sbjct: 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83
Query: 218 RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLL 277
E ++ +I +G ++L ++ WA+S +A + + L
Sbjct: 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143
Query: 278 VGHL 281
V L
Sbjct: 144 VQLL 147
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 23/216 (10%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
+ A R + + +++ ++ AL LL E + + AL I A
Sbjct: 28 EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI---ASG 84
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV-- 536
E ++ A + L +++ + +L + A+ N+A E V
Sbjct: 85 GNEQIQAVIDAGA------LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVID 136
Query: 537 -----PLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG 591
LV+LL ++ +EA AL+ A ++ +A+I AG LVQL+
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQIQAVIDAGALPALVQLLSSP 192
Query: 592 EQIVQLSALVLLCYIALHVPDSEDL-AQAEVLTVLE 626
+ + AL L IA + + +A L LE
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 20/116 (17%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 167 AAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LLGRDPESVEH 225
A +L ++A + + +I+ G + L++L+ + + A A+ + E ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHL 281
+I +G ++L ++ WA+S +A + + LV L
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 8e-10
Identities = 15/103 (14%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LLG 217
+ + +A +L ++A + + +I+ G + L++L+ + + A A+ +
Sbjct: 150 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209
Query: 218 RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN 260
E + + +G ++ K+Q A+ +L +
Sbjct: 210 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 11/60 (18%), Positives = 27/60 (45%)
Query: 157 TAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLL 216
++ + + +A +L ++A + + + E G + L +L + Q+ A A+ L
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 535 IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594
+ + + L+ + + A+ ++ N + +A+I AG LVQL+ +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGN----EQIQAVIDAGALPALVQLLSSPNEQ 69
Query: 595 VQLSALVLLCYIALH 609
+ AL L IA
Sbjct: 70 ILQEALWALSNIASG 84
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
+ A AL ++A G + +++ ++ AL LL E + + AL I + +
Sbjct: 154 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 213
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLA 524
+ + A +++L ++ + + +A+ L
Sbjct: 214 QKQAVKEA---------GALEKLEQLQSHENEKIQKEAQEALEKLQ 250
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 1e-15
Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LLG 217
+ A L +A + + +I+ G + L++L+ + + A A+ +
Sbjct: 24 PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83
Query: 218 RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLL 277
E ++ +I +G ++L ++ WA+S +A + + L
Sbjct: 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143
Query: 278 VGHL 281
V L
Sbjct: 144 VQLL 147
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 21/139 (15%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LLG 217
+ + +A +L ++A + + +I+ G + L++L+ + + A A+ +
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125
Query: 218 RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLL 277
E ++ +I +G ++L ++ WA+S +A + + + + L
Sbjct: 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Query: 278 VGHLAFET--VQEHSKYAI 294
+ E +Q+ ++ A+
Sbjct: 186 EQLQSHENEKIQKEAQEAL 204
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-13
Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 18/195 (9%)
Query: 420 KAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKD 479
A R L +A G + +++ ++ AL LL E + + AL I +
Sbjct: 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS---GG 85
Query: 480 AELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRM 534
E ++ A + L +++ + +L + A+ N+A +
Sbjct: 86 NEQIQAVIDAGA------LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 535 IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594
+ LV+LL ++ +EA AL+ A N + +A+ AG + L QL +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGN----EQKQAVKEAGALEKLEQLQSHENEK 195
Query: 595 VQLSALVLLCYIALH 609
+Q A L + H
Sbjct: 196 IQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 21/181 (11%)
Query: 453 LLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDL 512
L + ++ L + +A E ++ +A A A+V L + +
Sbjct: 20 QLNSPDQQELQSALRKL---SQIASGGNEQIQAVI--DAGALPALVQLL----SSPNEQI 70
Query: 513 LIPCIKAVGNLARTFKATETRMIV------PLVKLLDEREAEVSREASIALTKFACSDNY 566
L + A+ N+A + + + ++ LV+LL ++ +EA AL+ A
Sbjct: 71 LQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-- 127
Query: 567 LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDS-EDLAQAEVLTVL 625
++ +A+I AG LVQL+ + + AL L IA + + + +A L L
Sbjct: 128 --NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Query: 626 E 626
E
Sbjct: 186 E 186
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 6e-08
Identities = 15/103 (14%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LLG 217
+ + +A +L ++A + + +I+ G + L++L+ + + A A+ +
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167
Query: 218 RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN 260
E + + +G ++ K+Q A+ +L +
Sbjct: 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-07
Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 185 IIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKILKEGP 243
+ +++ + + ++A R + + E ++ +I +G ++L
Sbjct: 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 244 MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHL 281
++ WA+S +A + + LV L
Sbjct: 68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 496 AVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV-------PLVKLLDEREAE 548
+ + Q+ + + D L ++ + +A E V LV+LL +
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQ 69
Query: 549 VSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIAL 608
+ +EA AL+ A ++ +A+I AG LVQL+ + + AL L IA
Sbjct: 70 ILQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125
Query: 609 HVPDS-EDLAQAEVLTVL 625
+ + + A L L
Sbjct: 126 GGNEQIQAVIDAGALPAL 143
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
V +L ++ + + +A +L ++A + + + E G + L +L + Q+ A
Sbjct: 144 VQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202
Query: 212 AIGLL 216
A+ L
Sbjct: 203 ALEKL 207
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 2e-15
Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 19/213 (8%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
++ AA AL ++A G S + + ++ A+ F LL G +V+ + AL + A
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV---AGD 203
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK-----ATETR 533
+ R + NA ++ + + L+ + NL R K + ++
Sbjct: 204 STDYRDYVLQCNA------MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257
Query: 534 MIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQ 593
+ L KL+ + E +A A++ + + +A+I K LV+L+
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQ----EAIQAVIDVRIPKRLVELLSHEST 313
Query: 594 IVQLSALVLLCYIALHVPD-SEDLAQAEVLTVL 625
+VQ AL + I ++ + A VL L
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPAL 346
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 1/128 (0%)
Query: 155 LYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG 214
L GS+E K A +L ++A D+ Y +++ + P+L L KP A +
Sbjct: 181 LLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240
Query: 215 LLGRDPESVEHMIHSGVCL-VFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNI 273
L R + L AK++ + WA+S L+ + I
Sbjct: 241 NLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRI 300
Query: 274 IRLLVGHL 281
+ LV L
Sbjct: 301 PKRLVELL 308
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 9e-11
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 135 LPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPL 194
P + L +A L + E DA ++ L+ + +I+ L
Sbjct: 249 QPDWSVVSQAL----PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304
Query: 195 LKLVKEGKPEGQENAARAIG-LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
++L+ Q A RA+G ++ + + +I++GV +L ++ W
Sbjct: 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 364
Query: 254 VSELAGNYPKCQDLFAQHNIIRLLVGHL--AFETVQEHSKYAI 294
+S + + N+I LV L A ++ + +AI
Sbjct: 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 407
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 159 GSLEHKSDAAASLVSLA-RDNDRYGKLIIEEGGVGPLLKLVKEGK-PEGQENAARAIGLL 216
++ + A + R++ ++I+ G V L++ ++E + Q AA A+ +
Sbjct: 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 158
Query: 217 -GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIR 275
+ ++ + +F ++L G ++V+ WA+ +AG+ +D Q N +
Sbjct: 159 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 218
Query: 276 LLVGHLAFETV 286
++G
Sbjct: 219 PILGLFNSNKP 229
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 8e-07
Identities = 31/203 (15%), Positives = 70/203 (34%), Gaps = 25/203 (12%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
++ A RA+ ++ GN + + + L +LL E+++ + + ITA +
Sbjct: 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-------- 530
+ A ++ L +++E A+ A+ N +
Sbjct: 375 QIQ---------AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLV 425
Query: 531 ETRMIVPLVKLLDEREAEVSREASIALTKFACS-------DNYLHSDHSKAIISAGGAKH 583
I PL LL+ + + AL ++++ I AGG +
Sbjct: 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485
Query: 584 LVQLVYFG-EQIVQLSALVLLCY 605
+ ++I + + ++ Y
Sbjct: 486 IFNCQQNENDKIYEKAYKIIETY 508
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 5e-15
Identities = 49/463 (10%), Positives = 131/463 (28%), Gaps = 36/463 (7%)
Query: 158 AGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LL 216
+ ++++ A + ++ + + + GG+ L+ L++ Q+ AA A+ L+
Sbjct: 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72
Query: 217 GRDPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNII- 274
R + +L+ G ++Q + + L+ ++L A +
Sbjct: 73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVL 132
Query: 275 --RLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYH 332
R+++ + + +V +A N + + + + + +
Sbjct: 133 ADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS----SADAGRQTMRNYSGLID 188
Query: 333 SLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQS 392
SL+ + N + + + M V + + N + +
Sbjct: 189 SLM-AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSST 247
Query: 393 QHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAV 452
S+ N L +
Sbjct: 248 GCFSNKSDKMMNNN----------------YDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291
Query: 453 LLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDL 512
+ + + A AL +TA + + L + +SD+
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL----QSGNSDV 347
Query: 513 LIPCIKAVGNLAR---TFKATETRMIVPLVKLL--DEREAEVSREASIALTKFACSDNYL 567
+ + N++R + ++ + +LL S + + +
Sbjct: 348 VRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS 407
Query: 568 HSDHSKAIISAGGAKHLVQLVYFGE-QIVQLSALVLLCYIALH 609
+K S+ +++ L +A +LL +
Sbjct: 408 QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-05
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 535 IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594
I V+ L ++ + + + D + + GG LV L+ Q
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE----SAKQQVYQLGGICKLVDLLRSPNQN 59
Query: 595 VQLSALVLLCYIALHVPDSEDLAQAE 620
VQ +A L + ++ + +
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQ 85
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 6e-15
Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 24/218 (11%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
++ +A AL ++A G S +++ + A+ F LL + + AL I A
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI---AGD 173
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKA-----VGNLARTFKATETR 533
+ R K A +D L ++ D L + NL R
Sbjct: 174 GSAFRDLVIKHGA------IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227
Query: 534 MIV-----PLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLV 588
V LV+LL + EV ++ A++ N + + ++ G LV+L+
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN----ERIEMVVKKGVVPQLVKLL 283
Query: 589 YFGEQIVQLSALVLLCYIALHVPD-SEDLAQAEVLTVL 625
E + AL + I + ++ + A L V
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF 321
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 5/145 (3%)
Query: 135 LPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPL 194
PP+ A E IL + L E +D+ ++ L + ++++++G V L
Sbjct: 224 APPLDAVEQILPTLVR----LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279
Query: 195 LKLVKEGKPEGQENAARAIG-LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
+KL+ + A RAIG ++ E + +I +G VF +L +Q W
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339
Query: 254 VSELAGNYPKCQDLFAQHNIIRLLV 278
+S + H ++ LV
Sbjct: 340 MSNITAGRQDQIQQVVNHGLVPFLV 364
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 159 GSLEHKSDAAASLVSLA-RDNDRYGKLIIEEGGVGPLLK-LVKEGKPEGQENAARAIGLL 216
+LE + A + L R+ II G + + L K Q +A A+ +
Sbjct: 69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI 128
Query: 217 GR-DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIR 275
E + ++ G F +L + WA+ +AG+ +DL +H I
Sbjct: 129 ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID 188
Query: 276 LLVGHLAFETVQEHS 290
L+ LA + +
Sbjct: 189 PLLALLAVPDLSTLA 203
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 4e-09
Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 18/208 (8%)
Query: 423 AARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAEL 482
A RA+ ++ G + + ++ AL F LL ++Q + + ITA + +
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 483 RRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR------TFKATETRMIV 536
+ +V L ++ KAD A+ N +I
Sbjct: 354 VVNH---------GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 404
Query: 537 PLVKLLDEREAEVSREASIALTKFACSDNYLHSD--HSKAIISAGGAKHLVQLVYF-GEQ 593
PL+ LL ++ ++ + A++ + L S I GG + L E
Sbjct: 405 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 464
Query: 594 IVQLSALVLLCYIALHVPDSEDLAQAEV 621
+ + S ++ Y ++ + +++
Sbjct: 465 VYKASLNLIEKYFSVEEEEDQNVVPETT 492
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 8e-07
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
V+ L + ++A +L ++A K +++ G + + L+ E A
Sbjct: 106 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 165
Query: 212 AIG-LLGRDPESVEHMIHSGVCLVFAKILKEG-----PMKVQAVVAWAVSELAGNYPKCQ 265
A+G + G + +I G +L + W +S L N
Sbjct: 166 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225
Query: 266 DLFAQHNIIRLLVGHL 281
L A I+ LV L
Sbjct: 226 PLDAVEQILPTLVRLL 241
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 1e-14
Identities = 50/214 (23%), Positives = 84/214 (39%), Gaps = 20/214 (9%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
++ +A L ++A GNS R + ++ A+ F LL EDVQ + AL I A
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI---AGD 137
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADS-DLLIPCIKAVGNLARTFK-----ATET 532
R N + L ++ K + + + A+ NL R A +
Sbjct: 138 STMCRDYVLDCNI------LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191
Query: 533 RMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGE 592
+ L LL + +V +A AL+ + N D +A+I AG + LV+L+ +
Sbjct: 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPN----DKIQAVIDAGVCRRLVELLMHND 247
Query: 593 QIVQLSALVLLCYIALHVPD-SEDLAQAEVLTVL 625
V AL + I ++ + L L
Sbjct: 248 YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 5/147 (3%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
P A P L ++ L + +DA +L L+ + + +I+ G L+
Sbjct: 185 PEFAKVSPCLNVLSW----LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240
Query: 196 KLVKEGKPEGQENAARAIG-LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAV 254
+L+ + A RA+G ++ D + +++ +L ++ W +
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300
Query: 255 SELAGNYPKCQDLFAQHNIIRLLVGHL 281
S + NI L+ L
Sbjct: 301 SNITAGNRAQIQTVIDANIFPALISIL 327
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 18/206 (8%)
Query: 409 ELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMA 468
+L + M A AL +L +G SP S L + LL DV ++ A
Sbjct: 156 QLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWA 215
Query: 469 LMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLA---- 524
L ++ + A V +L ++ D ++ P ++AVGN+
Sbjct: 216 LSYLSDGPNDKIQAVIDA---------GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD 266
Query: 525 -RTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKH 583
+T + L+ LL + + +EA ++ + + +I A
Sbjct: 267 IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN----RAQIQTVIDANIFPA 322
Query: 584 LVQLVYFGEQIVQLSALVLLCYIALH 609
L+ ++ E + A +
Sbjct: 323 LISILQTAEFRTRKEAAWAITNATSG 348
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 7/162 (4%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+ + L +A +L +L R + + L L+ + +A
Sbjct: 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214
Query: 212 AIG-LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQ 270
A+ L + ++ +I +GVC ++L KV + AV + +
Sbjct: 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274
Query: 271 HNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTN 312
+ ++ L+ L K +I +A + + A N+
Sbjct: 275 CSALQSLLHLL------SSPKESIKKEACWTISNITAGNRAQ 310
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 4/139 (2%)
Query: 159 GSLEHKSDAAASLVSLAR--DNDRYGKLIIEEGGVGPLLKLVKEGK-PEGQENAARAIGL 215
S E + A L N ++I G V ++ +K + Q +A +
Sbjct: 32 KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTN 91
Query: 216 LGR-DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNII 274
+ + +I +G +F ++L VQ WA+ +AG+ C+D NI+
Sbjct: 92 IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNIL 151
Query: 275 RLLVGHLAFETVQEHSKYA 293
L+ + + ++ A
Sbjct: 152 PPLLQLFSKQNRLTMTRNA 170
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 52/361 (14%), Positives = 121/361 (33%), Gaps = 44/361 (12%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
V L + + ++A L ++A N +++I+ G V ++L+ + QE A
Sbjct: 70 VEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVW 129
Query: 212 AIG-LLGRDPESVEHMIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQDLFA 269
A+G + G ++++ + ++ + + + WA+S L +
Sbjct: 130 ALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK 189
Query: 270 QHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDK 329
+ +L L S +++ A S ++ N VID
Sbjct: 190 VSPCLNVLSWLL------FVSDTDVLADACW-----ALSYLSDGPNDKI--QAVID---- 232
Query: 330 QYHSLIPHPMGNKTPSQMHNVVTN---TMAMKVGTKPVQKQGNVINQGT-----DVKSNG 381
+ + + + VV+ + V +Q Q ++N + S+
Sbjct: 233 ---AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ-VILNCSALQSLLHLLSSP 288
Query: 382 QDNNVKQ----------NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLA 431
+++ K+ +++Q Q + L+ + +A A + +
Sbjct: 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA--ITNAT 346
Query: 432 KGNSP-ICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPN 490
G S + + E + LL + + L I + E++A+ + P
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPY 406
Query: 491 A 491
Sbjct: 407 C 407
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 7/154 (4%)
Query: 155 LYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG 214
L ++ K +A ++ ++ N + +I+ L+ +++ + ++ AA AI
Sbjct: 284 LLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343
Query: 215 LL--GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQH- 271
G E +++++ G +L K+ V + + +
Sbjct: 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI 403
Query: 272 NIIRLLV----GHLAFETVQEHSKYAIVSKATSI 301
N L+ G E +Q H I KA +
Sbjct: 404 NPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 22/198 (11%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
+ + A RA+ ++ G+ + I AL LL E ++ + + ITA
Sbjct: 250 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA---G 306
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV-- 536
+ ++ N L I++ A+ A+ N A + + +V
Sbjct: 307 NRAQIQTVIDANI------FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL 360
Query: 537 ----PLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKA-------IISAGGAKHLV 585
PL LL ++++ + A L + I A G +
Sbjct: 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIE 420
Query: 586 QLVYFGEQIVQLSALVLL 603
L Q + A L+
Sbjct: 421 FLQSHENQEIYQKAFDLI 438
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 9e-06
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 185 IIEEGGVGP-LLKLVKEGKPEGQENAARAIGLL---GRDPESVEHMIHSGVCLVFAKILK 240
+ G + +++++ PE Q +A + L +P E + GV F + LK
Sbjct: 15 MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK 74
Query: 241 EGP-MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA--FETVQEHSKYAI 294
+Q AW ++ +A + Q + + + L+ FE VQE + +A+
Sbjct: 75 RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWAL 131
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 3e-14
Identities = 52/408 (12%), Positives = 109/408 (26%), Gaps = 36/408 (8%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
V I+ T + E + ++ + I+E GG+ L + + +N
Sbjct: 324 VNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 382
Query: 212 AIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQH 271
+ L + G+ ++L + V A +S L N K + + Q
Sbjct: 383 TLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440
Query: 272 NIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQY 331
I LV + ++ + I A + T+ +
Sbjct: 441 GGIEALVRTV----LRAGDREDITEPAICA-----LRHLTSRHQDAEMAQNAVRLHY--- 488
Query: 332 HSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQ 391
+P + P ++ T+ + N + V+
Sbjct: 489 --GLPVVVKLLHPPSHWPLIKATVGLIRNLA-----LCPANHAPLREQGAIPRLVQL-LV 540
Query: 392 SQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFA 451
HQ ++ + + AL LA+ I + F
Sbjct: 541 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH-NRIVIRGLNTIPLFV 599
Query: 452 VLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSD 511
LL E++Q +A L E+ D E + A L ++ +
Sbjct: 600 QLLYSPIENIQRVAAGVLCELAQ----DKEAAEAIEAEGA------TAPLTELLHSRNEG 649
Query: 512 LLIPCIKAVGNLARTFKATETRMIVP--LVKLLDEREAEVSREASIAL 557
+ + ++ + + L + + L
Sbjct: 650 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 3e-13
Identities = 19/165 (11%), Positives = 56/165 (33%), Gaps = 8/165 (4%)
Query: 138 IAANEPILCLIWEQVAI-----LYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVG 192
++ + L I++ I + + A +L +L + + GG+
Sbjct: 220 LSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQ 279
Query: 193 PLLKLVKEGKPEGQENAARAIGLL-GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVA 251
++ L+ + + + +L + ES ++ SG I++ +
Sbjct: 280 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339
Query: 252 WAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET--VQEHSKYAI 294
V ++ + + ++ L HL + + ++ + +
Sbjct: 340 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 14/139 (10%), Positives = 38/139 (27%), Gaps = 3/139 (2%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK-PEGQENAARAIGLLG 217
+ AA + L++ ++ V +++ ++ E + + L
Sbjct: 162 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS 221
Query: 218 RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLL 277
E + + SG +L V + L + + ++ +
Sbjct: 222 HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281
Query: 278 VGHLAFET--VQEHSKYAI 294
V L + +
Sbjct: 282 VALLNKTNVKFLAITTDCL 300
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 1e-10
Identities = 30/198 (15%), Positives = 56/198 (28%), Gaps = 19/198 (9%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
+ A L +L ++ + L LL K + L + A
Sbjct: 250 VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL---AYG 306
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR----TFKATETRM 534
+ E + P +A+V+ + LL + + L+ E
Sbjct: 307 NQESKLIILASGGP--QALVNIMRT---YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 361
Query: 535 IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594
+ L L + + + L L +K G LVQL+ +
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLR-------NLSDAATKQEGMEGLLGTLVQLLGSDDIN 414
Query: 595 VQLSALVLLCYIALHVPD 612
V A +L + +
Sbjct: 415 VVTCAAGILSNLTCNNYK 432
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 36/232 (15%), Positives = 68/232 (29%), Gaps = 30/232 (12%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRAL--LCFAVLLEKGPEDVQYNSAMALMEITAVA 476
+ AA L +L N + + + L VL ED+ + AL +T+
Sbjct: 415 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474
Query: 477 EKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRM-- 534
+ + + + + +++ LI + A +
Sbjct: 475 QDAEMAQNAVRLHYG------LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 528
Query: 535 ---IVPLVKLLDEREAEVSREASIALTKFACSDNY-----------------LHSDHSKA 574
I LV+LL + R S+ T+ + +
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV 588
Query: 575 IISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLE 626
I VQL+Y + +Q A +LC +A +E + L
Sbjct: 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 640
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 4e-10
Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 30/241 (12%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
+ L +L+ + L LL +V +A L +T
Sbjct: 376 LVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC---N 429
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLI--PCIKAVGNLARTFKATETRM-- 534
+ + + + ++ L R + +A I P I A+ +L + E
Sbjct: 430 NYKNKMMVCQVGG------IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483
Query: 535 ------IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLV 588
+ +VKLL +A++ L + L + + G LVQL+
Sbjct: 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA----LCPANHAPLREQGAIPRLVQLL 539
Query: 589 YFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSK----QSHMTQDETVDPLL 644
Q Q + + L ++ + + T+ +
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFV 599
Query: 645 Q 645
Q
Sbjct: 600 Q 600
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 26/237 (10%)
Query: 410 LEDPATKAYMKAMAARALWHLAKG---NSPICRSITESRALLCFAVLLEKGPEDVQYNSA 466
+ + + A AL HL ++ L LL +
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509
Query: 467 MALMEITA--------VAEKDA-----ELRRSAFKPNAPACKAVVDQLFRIIEKADSDLL 513
+ L+ A + E+ A +L A + Q + +++
Sbjct: 510 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569
Query: 514 IPCIKAVGNLART----FKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHS 569
C A+ LAR I V+LL + R A+ L + A
Sbjct: 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-----DK 624
Query: 570 DHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP-DSEDLAQAEVLTVL 625
+ ++AI + G L +L++ + V A +L ++ P D + E+ + L
Sbjct: 625 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 681
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 5e-09
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 1/178 (0%)
Query: 167 AAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHM 226
+L LARD +I + ++L+ Q AA + L +D E+ E +
Sbjct: 572 CTGALHILARDIH-NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 630
Query: 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETV 286
G ++L V A + ++ + P+ + L
Sbjct: 631 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWN 690
Query: 287 QEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTP 344
+ + + ++ G + + H + H G P
Sbjct: 691 ETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMDPMMEHEMAGHHPGPDYP 748
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 17/185 (9%)
Query: 435 SPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPAC 494
+ + + + P +VQ + + M AV + A
Sbjct: 95 AAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRA--- 151
Query: 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLA-----RTFKATETRMIVPLVKLL-DEREAE 548
+ +L +++ D ++ V L+ R +M+ +V+ + + + E
Sbjct: 152 ---IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 208
Query: 549 VSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIAL 608
+R S L + + AI +GG LV ++ V A+ L + L
Sbjct: 209 TARCTSGTLHNLSHHR-----EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263
Query: 609 HVPDS 613
H +
Sbjct: 264 HQEGA 268
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 16/139 (11%), Positives = 46/139 (33%), Gaps = 3/139 (2%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLL-G 217
A +L +L + + GG+ ++ L+ + + + +L
Sbjct: 113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172
Query: 218 RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLL 277
+ ES ++ SG I++ + V ++ + + ++ L
Sbjct: 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 232
Query: 278 VGHLAFET--VQEHSKYAI 294
HL + + ++ + +
Sbjct: 233 GLHLTDPSQRLVQNCLWTL 251
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 3/139 (2%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK-PEGQENAARAIGLLG 217
+ AA + L++ ++ V +++ ++ E A + L
Sbjct: 29 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 88
Query: 218 RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLL 277
E + + SG K+L V + L + + ++ +
Sbjct: 89 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148
Query: 278 VGHLAFET--VQEHSKYAI 294
V L + +
Sbjct: 149 VALLNKTNVKFLAITTDCL 167
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 30/198 (15%), Positives = 56/198 (28%), Gaps = 19/198 (9%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
+ A L +L ++ + L LL K + L + A
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL---AYG 173
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLART----FKATETRM 534
+ E + P +A+V+ + LL + + L+ E
Sbjct: 174 NQESKLIILASGGP--QALVNIMR---TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228
Query: 535 IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594
+ L L + + + L L +K G LVQL+ +
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLR-------NLSDAATKQEGMEGLLGTLVQLLGSDDIN 281
Query: 595 VQLSALVLLCYIALHVPD 612
V A +L + +
Sbjct: 282 VVTCAAGILSNLTCNNYK 299
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 3/130 (2%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
V I+ T + + L L+ + I+E GG+ L + + +N
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249
Query: 212 AIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQH 271
+ L + G+ ++L + V A +S L N K + + Q
Sbjct: 250 TLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307
Query: 272 NIIRLLVGHL 281
I LV +
Sbjct: 308 GGIEALVRTV 317
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 8e-11
Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 19/202 (9%)
Query: 423 AARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAEL 482
A L +L+ + +I +S + +L + V + + L + E
Sbjct: 80 TAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 483 RRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRM-----IVP 537
R A + ++ ++ K + L + LA + ++ +
Sbjct: 139 VRLA---------GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 189
Query: 538 LVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQL 597
LV ++ E + + K S + AI+ AGG + L + Q +
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVLSV----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245
Query: 598 SALVLLCYIALHVPDSEDLAQA 619
+ L L ++ E +
Sbjct: 246 NCLWTLRNLSDAATKQEGMEGL 267
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 8e-11
Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 30/232 (12%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG--PEDVQYNSAMALMEITAVA 476
+ AA L +L N + + + + + ED+ + AL +T+
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341
Query: 477 EKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRM-- 534
++ + + + + +++ LI + A +
Sbjct: 342 QEAEMAQNAVRLHYG------LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 535 ---IVPLVKLLDEREAEVSREASIALTKFACSDNY-----------------LHSDHSKA 574
I LV+LL + R S+ T+ + +
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455
Query: 575 IISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLE 626
I VQL+Y + +Q A +LC +A +E + L
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 507
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 21/213 (9%)
Query: 420 KAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPE-DVQYNSAMALMEITAVAEK 478
AA + L+K + + + + ++ + + +A L ++
Sbjct: 34 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS----H 89
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR-----TFKATETR 533
E + FK + L +++ +L I + NL
Sbjct: 90 HREGLLAIFKSGG------IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 143
Query: 534 MIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGE- 592
+ +V LL++ + + L A + + I+++GG + LV ++
Sbjct: 144 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQ----ESKLIILASGGPQALVNIMRTYTY 199
Query: 593 QIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625
+ + + +L +++ + + +A + L
Sbjct: 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 232
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 25/182 (13%)
Query: 137 PIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLK 196
+A N L V L S A L+ + E+G + L++
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 404
Query: 197 LVKEGKPEGQ----------------------ENAARAIGLLGRDPESVEHMIHSGVCLV 234
L+ + Q E A+ +L RD + + +
Sbjct: 405 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464
Query: 235 FAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAF--ETVQEHSKY 292
F ++L +Q V A + ELA + + + L L E V ++
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 523
Query: 293 AI 294
+
Sbjct: 524 VL 525
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 25/218 (11%)
Query: 410 LEDPATKAYMKAMAARALWHLAKGNS---PICRSITESRALLCFAVLLEKGPEDVQYNSA 466
+ + + A AL HL + ++ L LL +
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376
Query: 467 MALMEITAVAEKD-------------AELRRSAFKPNAPACKAVVDQLFRIIEKADSDLL 513
+ L+ A+ + +L A + Q + +++
Sbjct: 377 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436
Query: 514 IPCIKAVGNLART----FKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHS 569
C A+ LAR I V+LL + R A+ L + A
Sbjct: 437 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-----DK 491
Query: 570 DHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607
+ ++AI + G L +L++ + V A +L ++
Sbjct: 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 36/241 (14%), Positives = 71/241 (29%), Gaps = 30/241 (12%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK 478
+ L +L+ + + L LL +V +A L +T
Sbjct: 243 LVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC---N 296
Query: 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLI--PCIKAVGNLARTFKATETRM-- 534
+ + + + ++ L R + +A I P I A+ +L + E
Sbjct: 297 NYKNKMMVCQVGG------IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 350
Query: 535 ------IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLV 588
+ +VKLL +A++ L + L + + G LVQL+
Sbjct: 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA----LCPANHAPLREQGAIPRLVQLL 406
Query: 589 YFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSH----MTQDETVDPLL 644
Q Q + + L ++ H + T+ +
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 466
Query: 645 Q 645
Q
Sbjct: 467 Q 467
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 162 EHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE 221
E +L LARD +I + ++L+ Q AA + L +D E
Sbjct: 434 EIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 492
Query: 222 SVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
+ E + G ++L V A + ++
Sbjct: 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 8/128 (6%)
Query: 171 LVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSG 230
+V+L D + + L KL+ + AA + L + S ++ S
Sbjct: 2 VVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 231 --VCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA--FETV 286
V + + ++ A + L+ + + + I LV L ++V
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSV 117
Query: 287 QEHSKYAI 294
++ +
Sbjct: 118 LFYAITTL 125
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 27/199 (13%)
Query: 426 ALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRS 485
A+ +L + +RA+ LL + V +A+ + +++ + RS
Sbjct: 1 AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 486 AFKPNAPACKAVVDQLFRIIEKA-DSDLLIPCIKAVGNLARTFKATETRMIV-------P 537
+V + R ++ D + + NL+ E + +
Sbjct: 58 P---------QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REGLLAIFKSGGIPA 105
Query: 538 LVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQL 597
LVK+L V A L A+ AGG + +V L+
Sbjct: 106 LVKMLGSPVDSVLFYAITTLHNLLLHQ----EGAKMAVRLAGGLQKMVALLNKTNVKFLA 161
Query: 598 SALVLLCYIALHVPDSEDL 616
L +A +S+ +
Sbjct: 162 ITTDCLQILAYGNQESKLI 180
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 9/147 (6%)
Query: 154 ILYTAGSLEHKSDAAASLVSLARDND---RYGKLIIEEGGVGPLLKLVKEGKPEGQENAA 210
+L + A +L L + + G+ ++KL+ A
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376
Query: 211 RA-IGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269
I L P + + G ++L Q + ++ +
Sbjct: 377 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ-----FVEGVR 431
Query: 270 QHNIIRLLVGHLAFETVQEHSKYAIVS 296
I+ G L H++ I
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRG 458
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 1e-10
Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 4/147 (2%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLV-KEGKPEGQENAA 210
V AG+ + AA + + +++ + ++ G + LL+L+ ++ + A
Sbjct: 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146
Query: 211 RAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269
AI L R+ + + V + +++ K++ A+ + L +P+ +
Sbjct: 147 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206
Query: 270 QHNIIRLLVGHLA--FETVQEHSKYAI 294
+++ LV + EH A+
Sbjct: 207 SMGMVQQLVALVRTEHSPFHEHVLGAL 233
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-09
Identities = 16/116 (13%), Positives = 42/116 (36%), Gaps = 1/116 (0%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+ +L + A ++ L R+ + + G L++ +++ + + +A
Sbjct: 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAF 189
Query: 212 AIG-LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQD 266
+ LL PE + G+ +++ V A+ L ++P+
Sbjct: 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 245
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 21/158 (13%), Positives = 48/158 (30%), Gaps = 15/158 (9%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP-EDVQYNSAMALMEITAVAE 477
++ AA+ + ++ + I + AL LL++ + V+ + A I+ +
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFA---ISCLVR 154
Query: 478 KDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLART-----FKATET 532
+ + + L R +++ L + + NL
Sbjct: 155 EQEAGLLQFLRLDG------FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208
Query: 533 RMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSD 570
M+ LV L+ + AL +
Sbjct: 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRE 246
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 19/213 (8%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESR-ALLCFAVLLEKGPEDVQYNSAMALMEITAVAE 477
++ A AL +L G+ ++ + + L+ ED+Q A L ++ A+
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 478 KDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV- 536
++ + + + KA+++ + L + A+ NL+ + +
Sbjct: 160 VNS---KKTLR-EVGSVKALMECALEV---KKESTLKSVLSALWNLSAHCTENKADICAV 212
Query: 537 -----PLVKLL----DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587
LV L + L + S + DH + + + L+Q
Sbjct: 213 DGALAFLVGTLTYRSQTNTLAIIESGGGIL-RNVSSLIATNEDHRQILRENNCLQTLLQH 271
Query: 588 VYFGEQIVQLSALVLLCYIALHVPDSEDLAQAE 620
+ + +A L ++ P ++
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 304
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 9/163 (5%)
Query: 104 MSSQLENSIGDVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEH 163
+ + E+++ V L ++ + I A + L + + +L
Sbjct: 180 LEVKKESTLKSVLSALWNLSAHCTEN-----KADICAVDGALAFLVGTLTYRSQTNTLAI 234
Query: 164 KSDAAA---SLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LLGRD 219
++ SL N+ + +++ E + LL+ +K NA + L R+
Sbjct: 235 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 294
Query: 220 PESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYP 262
P+ E + G + ++ + A A+ L N P
Sbjct: 295 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 10/187 (5%)
Query: 134 GLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLII-EEGGVG 192
GL IA +L + E + S+ + A +L +L + + +G +
Sbjct: 74 GLQAIAE---LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 130
Query: 193 PLLKLVKEGKPEGQENAARAIGLL--GRDPESVEHMIHSGVCLVFAKILKEGP-MKVQAV 249
L+ +K + Q+ A + L D S + + G + E
Sbjct: 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 190
Query: 250 VAWAVSELAGNYPKCQDLFAQ-HNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308
V A+ L+ + + + + LVG L + + + + AI+ I V +
Sbjct: 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS--QTNTLAIIESGGGILRNVSSL 248
Query: 309 NKTNNAN 315
TN +
Sbjct: 249 IATNEDH 255
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 15/154 (9%), Positives = 46/154 (29%), Gaps = 11/154 (7%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRY-GKLIIEEGGVGPLLKLVKEGKPEGQ---- 206
+ ++L +L+ + +G + L+ +
Sbjct: 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 235
Query: 207 ENAARAI----GLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYP 262
E+ + L+ + + + + + + LK + + + + L+ P
Sbjct: 236 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP 295
Query: 263 KCQDLFAQHNIIRLLVGHLAF--ETVQEHSKYAI 294
K Q+ + +L + + + S A+
Sbjct: 296 KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 84 RANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLRVSASAEDRDDEYLGLPPIAANEP 143
+G + + + + + +E+ +LR +S ++++ + + N
Sbjct: 211 AVDGALAFLVGTLTYRSQTNTLAIIESG----GGILRNVSSLIATNEDHRQI--LRENNC 264
Query: 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKP 203
+ L+ + SL S+A +L +L+ N + + + + G V L L+
Sbjct: 265 LQTLLQ-----HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 319
Query: 204 EGQENAARAIGLLGRDPESVE 224
+A A+ L + +
Sbjct: 320 MIAMGSAAALRNLMANRPAKY 340
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 6e-07
Identities = 24/211 (11%), Positives = 65/211 (30%), Gaps = 18/211 (8%)
Query: 419 MKAMAARALWHLAKGNSPICRS-ITESRALLCFAVLLEKGP-EDVQYNSAMALMEITAVA 476
++ + A L +L+ + + E ++ + E + AL ++A
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202
Query: 477 EKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETR--- 533
++ ++ A +V L + ++ + N++ E
Sbjct: 203 TEN----KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258
Query: 534 -----MIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLV 588
+ L++ L + A L + + +A+ G L L+
Sbjct: 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN----PKDQEALWDMGAVSMLKNLI 314
Query: 589 YFGEQIVQLSALVLLCYIALHVPDSEDLAQA 619
+ +++ + + L + + P A
Sbjct: 315 HSKHKMIAMGSAAALRNLMANRPAKYKDANI 345
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 15/138 (10%)
Query: 158 AGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVK-----------EGKPEGQ 206
A A L+ L+ D + + + E GG+ + +L++ +
Sbjct: 43 APVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR 101
Query: 207 ENAARAIG-LLGRDPESVEHMIHSGVCL-VFAKILKEGPMKVQAVVAWAVSELA-GNYPK 263
A A+ L D + + C+ LK +Q V+A + L+
Sbjct: 102 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN 161
Query: 264 CQDLFAQHNIIRLLVGHL 281
+ + ++ L+
Sbjct: 162 SKKTLREVGSVKALMECA 179
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 14/120 (11%)
Query: 184 LIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGP 243
E G+ + A + L D E M G A++L+
Sbjct: 27 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDC 86
Query: 244 -----------MKVQAVVAWAVSELA-GNYPKCQDLFAQHNIIRLLVGHLA--FETVQEH 289
+ ++ A++ L G+ L + +R LV L E +Q+
Sbjct: 87 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 146
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 18/183 (9%)
Query: 409 ELEDPATKAYMKAMAARALWHLAKGNSPICRSI-TESRALLCFAVLL----EKGPEDVQY 463
E K ALW+L+ + I AL L + +
Sbjct: 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236
Query: 464 NSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523
+ L ++++ + + R+ + N + L + ++ ++ + NL
Sbjct: 237 SGGGILRNVSSLIATNEDHRQILRENNC------LQTLLQHLKSHSLTIVSNACGTLWNL 290
Query: 524 ARTFKATETRM-----IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISA 578
+ + + + L L+ + ++ ++ AL N I+S
Sbjct: 291 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL--RNLMANRPAKYKDANIMSP 348
Query: 579 GGA 581
G +
Sbjct: 349 GSS 351
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 5e-09
Identities = 31/212 (14%), Positives = 75/212 (35%), Gaps = 17/212 (8%)
Query: 419 MKAMAARALWHLAKGNSPICRSITESR-ALLCFAVLLEKGPEDVQYNSAMALMEITAVAE 477
++ A AL +L G+ ++ + + L+ ED+Q A L ++ A+
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275
Query: 478 KDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRM--- 534
++ + + + KA+++ +E L + A+ NL+ + +
Sbjct: 276 VNS---KKTLR-EVGSVKALMECA---LEVKKESTLKSVLSALWNLSAHCTENKADICAV 328
Query: 535 ---IVPLVKLL---DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLV 588
+ LV L + E+ + + S + DH + + + L+Q +
Sbjct: 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388
Query: 589 YFGEQIVQLSALVLLCYIALHVPDSEDLAQAE 620
+ +A L ++ P ++
Sbjct: 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDM 420
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 167 AAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LLGRDPESVEH 225
++ SL N+ + +++ E + LL+ +K NA + L R+P+ E
Sbjct: 357 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 416
Query: 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYP 262
+ G + ++ + A A+ L N P
Sbjct: 417 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 10/173 (5%)
Query: 134 GLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLII-EEGGVG 192
GL IA +L + E + S+ + A +L +L + + +G +
Sbjct: 190 GLQAIAE---LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246
Query: 193 PLLKLVKEGKPEGQENAARAIGLL--GRDPESVEHMIHSGVCLVFAKILKEGP-MKVQAV 249
L+ +K + Q+ A + L D S + + G + E
Sbjct: 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 306
Query: 250 VAWAVSELAGNYP-KCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSI 301
V A+ L+ + D+ A + LVG L + + + + AI+ I
Sbjct: 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS--QTNTLAIIESGGGI 357
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-07
Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 11/133 (8%)
Query: 84 RANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLRVSASAEDRDDEYLGLPPIAANEP 143
+G + + + + + I +LR +S ++++ + + N
Sbjct: 327 AVDGALAFLVGTLTYRS----QTNTLAIIESGGGILRNVSSLIATNEDHRQI--LRENNC 380
Query: 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKP 203
+ L + L + SL S+A +L +L+ N + + + + G V L L+
Sbjct: 381 LQTL----LQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 435
Query: 204 EGQENAARAIGLL 216
+A A+ L
Sbjct: 436 MIAMGSAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 15/154 (9%), Positives = 45/154 (29%), Gaps = 11/154 (7%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRY-GKLIIEEGGVGPLLKLVKEGKPEGQENAA 210
+ ++L +L+ + +G + L+ +
Sbjct: 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351
Query: 211 RAIG--------LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYP 262
+ G L+ + + + + + + LK + + + + L+ P
Sbjct: 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP 411
Query: 263 KCQDLFAQHNIIRLLVGHLAFET--VQEHSKYAI 294
K Q+ + +L + + + S A+
Sbjct: 412 KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 23/203 (11%), Positives = 64/203 (31%), Gaps = 18/203 (8%)
Query: 419 MKAMAARALWHLAKGNSPICRS-ITESRALLCFAVLLEKGP-EDVQYNSAMALMEITAVA 476
++ + A L +L+ + + E ++ + E + AL ++A
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318
Query: 477 EKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRM-- 534
++ ++ A +V L + ++ + N++ E
Sbjct: 319 TEN----KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374
Query: 535 ------IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLV 588
+ L++ L + A L + + +A+ G L L+
Sbjct: 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN----PKDQEALWDMGAVSMLKNLI 430
Query: 589 YFGEQIVQLSALVLLCYIALHVP 611
+ +++ + + L + + P
Sbjct: 431 HSKHKMIAMGSAAALRNLMANRP 453
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 7e-04
Identities = 37/256 (14%), Positives = 84/256 (32%), Gaps = 56/256 (21%)
Query: 94 TIIPAAAFRKMSSQLENSIGDVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQ-- 151
++P + +++S L + V LL + + D+DD L +++++ + +
Sbjct: 13 GLVPRGSHMRLTSHLGTKVEMVYSLLSMLGT-HDKDDMSRTLLAMSSSQDSCISMRQSGC 71
Query: 152 ----VAILY-----------TAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLK 196
+ +L+ + GS E ++ A+A+L ++ + E + L +
Sbjct: 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQ 131
Query: 197 L------------------------VKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVC 232
+ + A + L D E M G
Sbjct: 132 IRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGL 191
Query: 233 LVFAKILKEGP-----------MKVQAVVAWAVSELA-GNYPKCQDLFAQHNIIRLLVGH 280
A++L+ + ++ A++ L G+ L + +R LV
Sbjct: 192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251
Query: 281 LAF--ETVQEHSKYAI 294
L E +Q+ +
Sbjct: 252 LKSESEDLQQVIASVL 267
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 1e-08
Identities = 23/141 (16%), Positives = 57/141 (40%), Gaps = 2/141 (1%)
Query: 140 ANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVK 199
+ + L +I + +L + ++ +L +LA N+ + II+E GV + +
Sbjct: 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM 633
Query: 200 EGKPEGQENAARAIGLLGRDPESVEHMIHSGVCL-VFAKILKEGPMKVQAVVAWAVSELA 258
E AA+ + L + ++ + + A + ++ + A A++ +
Sbjct: 634 EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693
Query: 259 GNYPK-CQDLFAQHNIIRLLV 278
K C+ + A + + +L
Sbjct: 694 SVSVKCCEKILAIASWLDILH 714
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 7e-07
Identities = 30/236 (12%), Positives = 75/236 (31%), Gaps = 23/236 (9%)
Query: 420 KAMAARALWHLAKGNSP--ICRSITESRALLCFAVLLEKGPEDVQ-YNSAMALMEITAVA 476
K A +AL + +P + LL++ ++ + S MAL + ++
Sbjct: 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612
Query: 477 EKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLA-----RTFKATE 531
E + ++ + + L + + NL
Sbjct: 613 ESVRQRIIKEQGV---------SKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663
Query: 532 TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKH-LVQLVYF 590
+ L L ++ + E + + AL + I++ L L+
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSV----KCCEKILAIASWLDILHTLIAN 719
Query: 591 GEQIVQLSALVLLCYIALHVPD-SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQ 645
VQ +V++ + + ++ L + +++ +L + T+ + + Q
Sbjct: 720 PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQ 775
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 8e-06
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 2/114 (1%)
Query: 183 KLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEG 242
++ EG L L K QE AR + + E ++ G ++ EG
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG 548
Query: 243 PMKVQAVVAWAVSELA--GNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAI 294
K + A++ + N ++IR L+ L + + ++
Sbjct: 549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 5e-07
Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 3/163 (1%)
Query: 164 KSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLL-GRDPES 222
S AA + K + + G+ LL+L+K + Q A+ L D ++
Sbjct: 27 ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86
Query: 223 VEHMIHSGVCLVFAKILKEGP-MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHL 281
+ ++LK+ ++ + + + L+ N + ++ L +
Sbjct: 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM-ITEALLTLTENII 145
Query: 282 AFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVI 324
+ Y + + N ++ G++ +
Sbjct: 146 IPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 9e-05
Identities = 17/157 (10%), Positives = 47/157 (29%), Gaps = 17/157 (10%)
Query: 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLG 217
+ + + +L +L +++ + E GV LL+++K+ E ++ + L
Sbjct: 64 QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123
Query: 218 RDPESVEHMIHSGVCLVFAKILKEG---------------PMKVQAVVAWAVSELAGNYP 262
+ + MI + + I+ + V + ++
Sbjct: 124 SNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGA 183
Query: 263 KCQDLFAQH-NIIRLLVGHLAFETVQEHSKYAIVSKA 298
+ + +I LV ++
Sbjct: 184 DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENC 220
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 4e-06
Identities = 77/513 (15%), Positives = 140/513 (27%), Gaps = 161/513 (31%)
Query: 3 DKVKQILAKPIQLADQVVKAADEATSMKQ--DCAELKSKTEK----------------LA 44
D K IL+K + D ++ + D + + L SK E+ L
Sbjct: 40 DMPKSILSK--EEIDHIIMSKDAVSGTLRLFWT--LLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 45 ALLRQAARASS---DLYERPTRRIIDDTE-------------QVLEKAL------SLVIK 82
+ ++ R S +Y R+ +D + L +AL V+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 83 YRANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWL-LRVSASAEDR-----------DD 130
G K Q + + WL L+ S E D
Sbjct: 156 DGVLGSGKTWVA---LDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 131 EYLGLPPIAANEPIL-------------------CLI-----WE---------QVAILYT 157
+ ++N + CL+ IL T
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 158 AG----------------SLEHKS-----DAAASLVSLARDNDRYGKLIIEEGGVGPL-L 195
SL+H S D SL+ D R L E P L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRL 330
Query: 196 KLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGV--------------CLVF---AKI 238
++ E ++ A + + + +I S + VF A I
Sbjct: 331 SIIAESI---RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 239 LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLV-GHLAFETVQEHSKY----A 293
P + +++ W + LV T+ S Y
Sbjct: 388 ----PTILLSLI-WFDVI-----KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 294 IVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTN 353
+ ++H +V + N S++ + D+ ++S I H + N + +
Sbjct: 438 KLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 354 T------MAMKV--GTKPVQKQGNVINQGTDVK 378
+ K+ + G+++N +K
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 72/407 (17%), Positives = 121/407 (29%), Gaps = 131/407 (32%)
Query: 3 DKVKQILAKP------IQLAD----QVVKAADEATSMKQDCAELKSKTEKLAALL--RQA 50
+++++L + L + + A + L K LL R
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----------LSCKI-----LLTTRFK 275
Query: 51 ARASSDLYERPTRRIIDDTEQVLEK--ALSLVIKY----------RANGIIKRVFTIIPA 98
T +D L SL++KY R +II A
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-A 334
Query: 99 AAFRKMSSQLEN----------SIGDVSWLLRVSASAEDRDD-EYLGLPPIAANEP--IL 145
+ R + +N +I + S L V AE R + L + P +A+ P +L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEG 205
LIW V I + +K SL + + I P + L + K E
Sbjct: 393 SLIWFDV-IKSDVMVVVNKL-HKYSL--VEKQPKESTISI-------PSIYLELKVKLEN 441
Query: 206 QENAARAI-----GLLGRDPESVE--------------HMI---HSGVCLVF-------- 235
+ R+I D + + H+ H +F
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 236 ---AKILKEGPMKVQAVVAWAVSELAGNYPKCQDL--FAQHNII-------RLLVGHLAF 283
KI + AW S Q L + + I RL+ L F
Sbjct: 502 FLEQKIRHDST-------AWNAS--GSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDF 551
Query: 284 ETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQ 330
+ + + I SK T + + +A + A + ++ KQ
Sbjct: 552 --LPKIEENLICSKYTDL--LRIALMAEDEA--------IFEEAHKQ 586
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 663 | |||
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.98 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.98 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.97 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.97 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.97 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.97 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.96 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.96 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.96 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.95 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.94 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.94 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.93 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.91 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.91 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.91 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.9 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.89 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.89 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.87 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.87 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.52 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.52 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.43 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.4 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.29 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.26 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.25 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.25 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.25 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.23 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.18 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.16 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.1 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.08 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.02 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.99 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.98 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.85 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.83 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.8 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.77 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.63 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.6 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.52 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.25 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.2 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.94 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.93 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.91 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.83 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.75 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.68 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.51 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.26 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.17 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.15 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.12 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.0 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 96.99 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.83 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 96.6 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.41 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.35 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.3 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.11 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 95.26 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 94.99 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.23 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 89.58 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 89.26 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 88.27 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 88.02 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 82.44 |
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-40 Score=368.26 Aligned_cols=406 Identities=15% Similarity=0.176 Sum_probs=316.4
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhh-cCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcch
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLA-RDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESV 223 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La-~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~ 223 (663)
-+.++|..|++ ++.+.+..|+.+++.|. .+.....+.|++.|+||+||+||++. ++.+|++|+|||+||+. +++++
T Consensus 58 ~i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 58 SVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 35677999999 99999999999999754 44344578999999999999999855 58999999999999984 77899
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHA 303 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~ 303 (663)
..|+++|+||+|+++|+++++++++.|+|+|+||+.+++++|+.+.+.|++++|+.+|.+......... .+..
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~-------~~~~ 209 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-------YLRN 209 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH-------HHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH-------HHHH
Confidence 999999999999999999999999999999999999899999999999999999999987643221110 1111
Q ss_pred HHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCC
Q 037612 304 VVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQD 383 (663)
Q Consensus 304 lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~ 383 (663)
+.++..+.+. +.... .....+ ..++.
T Consensus 210 a~~~L~nl~~---~~~~~------------------------~~~~~~--~~~lp------------------------- 235 (510)
T 3ul1_B 210 LTWTLSNLCR---NKNPA------------------------PPLDAV--EQILP------------------------- 235 (510)
T ss_dssp HHHHHHHHHC---CCSSC------------------------CCHHHH--HHHHH-------------------------
T ss_pred HHHHHHHHhh---cccch------------------------hHHHHH--HhHHH-------------------------
Confidence 2222111110 00000 000000 00000
Q ss_pred ccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH
Q 037612 384 NNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY 463 (663)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~ 463 (663)
.+. +....+|++ ++..|+++|++|+.++......+.+.|+++.|+.+|.+.+..++.
T Consensus 236 ---------~L~----------~LL~~~~~~----v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 292 (510)
T 3ul1_B 236 ---------TLV----------RLLHHNDPE----VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292 (510)
T ss_dssp ---------HHH----------HHTTCSCHH----HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred ---------HHH----------HHHhcCCHH----HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhh
Confidence 000 011123543 588999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----HhhccHHHH
Q 037612 464 NSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRMIVPL 538 (663)
Q Consensus 464 ~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pL 538 (663)
.++++|++|+...+ +.++..+ -.++++.|+.++.+.+++++..++.+|++|+..... .+.++||+|
T Consensus 293 ~al~aL~nl~~~~~---~~~~~i~------~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~L 363 (510)
T 3ul1_B 293 PALRAIGNIVTGTD---EQTQKVI------DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363 (510)
T ss_dssp HHHHHHHHHTTSCH---HHHHHHH------HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhhcCCH---HHHHHHh------hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHH
Confidence 99999999975543 3333221 135677888999999999999999999999875333 346899999
Q ss_pred HHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc---CCCChH-
Q 037612 539 VKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIAL---HVPDSE- 614 (663)
Q Consensus 539 V~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~---~~~~~~- 614 (663)
+.+|.+++++++++|+|||+|++++++ .++...+++.|+|++|+.||+++++.++..++.+|.++.. +.++.+
T Consensus 364 v~lL~~~~~~v~~~Aa~aL~Nl~~~~~---~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~ 440 (510)
T 3ul1_B 364 VGVLSKADFKTQKEAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK 440 (510)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHCC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHccCC---HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHH
Confidence 999999999999999999999998764 6788899999999999999999999888889999988852 334433
Q ss_pred ---HHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 615 ---DLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 615 ---~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
.|.+.|++..++ .+|.|.++++|.+|..++|.|++
T Consensus 441 ~~~~iee~ggl~~ie-------~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 441 LSIMIEECGGLDKIE-------ALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHTTHHHHHH-------HGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCcHHHHH-------HHHcCCCHHHHHHHHHHHHHHCC
Confidence 355667766665 56888999999999999999986
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=359.76 Aligned_cols=405 Identities=15% Similarity=0.171 Sum_probs=315.3
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhh-cCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcchH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLA-RDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESVE 224 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La-~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~~ 224 (663)
+.+++..+++ ++.+.+..|+..++.|. .++....+.|++.|+||+||++|+.+ ++..|..|+|+|+||+. +++++.
T Consensus 78 l~~lv~~l~s-~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4456889999 99999999999998864 44444578899999999999999865 58999999999999996 567889
Q ss_pred HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHH
Q 037612 225 HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAV 304 (663)
Q Consensus 225 ~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~l 304 (663)
.++++|+||+|+++|+++++++++.|+|+|+||+.+++++|+.+.+.|++++|+.+|........... .+..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~-------~~~~a 229 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-------YLRNL 229 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH-------HHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH-------HHHHH
Confidence 99999999999999999999999999999999999899999999999999999999987642221110 11222
Q ss_pred HHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCc
Q 037612 305 VVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDN 384 (663)
Q Consensus 305 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~ 384 (663)
.++..+.+. +..+. .....+ ..++.
T Consensus 230 ~~~L~nl~~---~~~~~------------------------~~~~~~--~~~lp-------------------------- 254 (529)
T 3tpo_A 230 TWTLSNLCR---NKNPA------------------------PPLDAV--EQILP-------------------------- 254 (529)
T ss_dssp HHHHHHHHC---CCTTC------------------------CCHHHH--HHHHH--------------------------
T ss_pred HHHHHHHHh---cccch------------------------hhHHHH--hhHHH--------------------------
Confidence 222222111 00000 000000 00000
Q ss_pred cccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHH
Q 037612 385 NVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYN 464 (663)
Q Consensus 385 ~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~ 464 (663)
.+. +....+|++ ++..|++||.+++.++......+.+.|+++.|+.+|.+.+..++..
T Consensus 255 --------~L~----------~LL~~~~~~----v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 312 (529)
T 3tpo_A 255 --------TLV----------RLLHHNDPE----VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312 (529)
T ss_dssp --------HHH----------HHTTSSCHH----HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred --------HHH----------HHhcCCcHH----HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence 000 011124554 5889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----HhhccHHHHH
Q 037612 465 SAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRMIVPLV 539 (663)
Q Consensus 465 aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pLV 539 (663)
++++|++|+.+. ++.+.... -.++++.|+.++.+.+++++..|+.+|++|+..... .+.++||+|+
T Consensus 313 a~~aL~nl~~~~---~~~~~~i~------~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv 383 (529)
T 3tpo_A 313 ALRAIGNIVTGT---DEQTQKVI------DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383 (529)
T ss_dssp HHHHHHHHTTSC---HHHHHHHH------HTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccc---hHHHHHHh------hcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence 999999997543 33333221 135778899999999999999999999999875332 3468999999
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc---CCCChH--
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIAL---HVPDSE-- 614 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~---~~~~~~-- 614 (663)
.+|.+++++++++|+|||+|++++++ .++...+++.|+|++|+.||.++++.++..++.+|.++.. ..++.+
T Consensus 384 ~lL~~~~~~v~~~A~~aL~nl~~~~~---~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~ 460 (529)
T 3tpo_A 384 GVLSKADFKTQKAAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL 460 (529)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHH
Confidence 99999999999999999999997663 6888999999999999999999999888889999988842 333332
Q ss_pred --HHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 615 --DLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 615 --~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
.|.+.|++..++ .+|+|.++++|.+|..++|.|++
T Consensus 461 ~~~iee~ggl~~ie-------~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 461 SIMIEECGGLDKIE-------ALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHTTCHHHHT-------GGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCcHHHHH-------HHHcCCCHHHHHHHHHHHHHHCC
Confidence 355667766665 56889999999999999999986
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=354.43 Aligned_cols=404 Identities=15% Similarity=0.141 Sum_probs=309.1
Q ss_pred ccccHHHHHHHHHhhhc-----chHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCC--CHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSIG-----DVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAG--SLEHKSDAAA 169 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~~-----~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G--~~e~k~~AA~ 169 (663)
..+ ++.|..+|.+... .+..|.+++...++ ....|++ ..+.+..++..++..|.+ + +.+.+.+|++
T Consensus 329 ~~g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~----d~~~~~~-~~g~i~~Lv~~l~~lL~~-~~~d~~v~~~Ave 401 (810)
T 3now_A 329 EQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ----DAAIRPF-GDGAALKLAEACRRFLIK-PGKDKDIRRWAAD 401 (810)
T ss_dssp HHH-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT----TTSCCSS-TTTHHHHHHHHHHHHHHC-SSCCSSHHHHHHH
T ss_pred HcC-cHHHHHHHcCCCHHHHHHHHHHHHHhcccccc----Cccccch-hhccHHHHHHHHHHHhcC-CCCCHHHHHHHHH
Confidence 444 5888888854321 13334444322110 1123343 346677788888999998 7 8899999999
Q ss_pred HHHHhhcCChhhHHHHH-hcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCc---------------------------
Q 037612 170 SLVSLARDNDRYGKLII-EEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE--------------------------- 221 (663)
Q Consensus 170 ~L~~La~~~~~~~~~Iv-e~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~--------------------------- 221 (663)
+|.+|+.+ +..+..++ +.|+||+||+||+++++.+|..|+|+|.||+.+.+
T Consensus 402 aLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 402 GLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 99999976 44555555 68999999999999999999999999999997432
Q ss_pred ---ch---HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHh
Q 037612 222 ---SV---EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIV 295 (663)
Q Consensus 222 ---~~---~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~ 295 (663)
++ +.|+++|+||+|+++|+++++++|++|+|+|+|||. ++++|..+.+.|+||+|+.+|++|+.
T Consensus 481 ~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~--------- 550 (810)
T 3now_A 481 VDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTE--------- 550 (810)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCH---------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCH---------
Confidence 22 789999999999999999999999999999999996 57899999999999999999976530
Q ss_pred hhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCc
Q 037612 296 SKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGT 375 (663)
Q Consensus 296 ~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~ 375 (663)
T Consensus 551 -------------------------------------------------------------------------------- 550 (810)
T 3now_A 551 -------------------------------------------------------------------------------- 550 (810)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC-ChhhhHH-HhhhccHHHHHHH
Q 037612 376 DVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG-NSPICRS-ITESRALLCFAVL 453 (663)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g-n~~~~~~-I~esgal~~L~~L 453 (663)
..|..|++||.+|+.+ ++...-. ....+++++|+.|
T Consensus 551 ------------------------------------------~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~L 588 (810)
T 3now_A 551 ------------------------------------------KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNL 588 (810)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHT
T ss_pred ------------------------------------------HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHH
Confidence 1367889999999874 3332110 0124699999999
Q ss_pred hhcCCh-hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH--
Q 037612 454 LEKGPE-DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-- 530 (663)
Q Consensus 454 L~~~~~-~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-- 530 (663)
|.++.. ..+++|+|||.||+...+ +.++.+.. .++++.|+.++.+.++.++.+|+.+|+||+......
T Consensus 589 L~~~~~~l~~~eAl~AL~NLa~~~d---~~~~~Ii~------aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 589 LQQDCTALENFESLMALTNLASMNE---SVRQRIIK------EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp TSTTSCHHHHHHHHHHHHHHTTSCH---HHHHHHHH------TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhcCCH---HHHHHHHH------cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 997644 556899999999986643 44443221 357899999999999999999999999999864432
Q ss_pred --h-hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH-cCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 531 --E-TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIIS-AGGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 531 --e-~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~-~ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
+ .+.+++||.||++.+..++++|+|||++++++. .+++++|++ .||+++|++||.+++..+|..|+++|+|+
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s----~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS----VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM 735 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC----HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 2 478999999999999999999999999998642 577889999 99999999999999999999999999999
Q ss_pred hcCCCC-hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhh
Q 037612 607 ALHVPD-SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELY 654 (663)
Q Consensus 607 a~~~~~-~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~ 654 (663)
+.+.++ ...|.++|+++.|..-.+.. -..++.+-+.+.+++..+..|
T Consensus 736 ~~~s~e~~~~l~e~G~i~~L~~LL~~~-d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 736 INAGEEIAKKLFETDIMELLSGLGQLP-DDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HTTCHHHHHHHHTSTHHHHHTTSCCCT-TSTTHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHhCc-ccCcHHHHHHHHHHHHHHHhC
Confidence 875543 56799999999998322211 011223444455555544443
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=336.88 Aligned_cols=377 Identities=13% Similarity=0.146 Sum_probs=295.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv 227 (663)
..++..|++ ++.+.|..|+++|.+|+..++.++..|++.|+||+||++|+++++..|+.|+++|.||+.+ ++++..|+
T Consensus 5 ~~lv~~L~s-~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 5 PKAVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345889999 9999999999999999988788888999999999999999999999999999999999975 89999999
Q ss_pred HcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 228 HSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 228 ~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
++|+||+|+++|+ ++++++++.++|+|+||+.+ ++.|..+.+ |+||+|+.+|.... +.+ +
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~----s~~---~---------- 144 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF----SGW---C---------- 144 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH----HTC---C----------
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc----ccc---c----------
Confidence 9999999999999 88999999999999999986 789998999 99999999995210 000 0
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
. +
T Consensus 145 --------------------~-----------------------------------------------------~----- 146 (457)
T 1xm9_A 145 --------------------D-----------------------------------------------------G----- 146 (457)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------c-----------------------------------------------------C-----
Confidence 0 0
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhh-ccHHHHHHHhhc------CCh
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITES-RALLCFAVLLEK------GPE 459 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~es-gal~~L~~LL~~------~~~ 459 (663)
...+.+|..++ .+...|++||+||+.+ +.+...+.+. |++++|+.+|++ .+.
T Consensus 147 ----------------~~~~~~e~~~~----~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 205 (457)
T 1xm9_A 147 ----------------NSNMSREVVDP----EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD 205 (457)
T ss_dssp -----------------------CCCH----HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC
T ss_pred ----------------ccchhcccccH----HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCch
Confidence 00011122233 3688999999999987 8899999997 999999999986 356
Q ss_pred hHHHHHHHHHHHHhhhhh----ccHH-H----H--------hhhcCCC------------------------CchhHhHH
Q 037612 460 DVQYNSAMALMEITAVAE----KDAE-L----R--------RSAFKPN------------------------APACKAVV 498 (663)
Q Consensus 460 ~vq~~aa~AL~~i~a~a~----~~~~-~----r--------r~a~~~~------------------------~~a~~~vv 498 (663)
.++.+|+++|.+++...+ .... + | ...|... .-.-.+++
T Consensus 206 ~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 285 (457)
T 1xm9_A 206 KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI 285 (457)
T ss_dssp TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHH
T ss_pred HHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchH
Confidence 788999999999862110 0000 0 0 0011000 00113468
Q ss_pred HHHHHHhhhcC-cchhhHHHHHHHHhhhch---h--h-----HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCC
Q 037612 499 DQLFRIIEKAD-SDLLIPCIKAVGNLARTF---K--A-----TETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYL 567 (663)
Q Consensus 499 ~qL~~ll~~~~-~~l~~~a~~aLg~La~~~---~--~-----~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~ 567 (663)
+.|+.++.+.+ +++++.|+.+|+||+..- . . .+.++||+||++|.+++++++++|+|+|.|++.+.
T Consensus 286 ~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--- 362 (457)
T 1xm9_A 286 RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--- 362 (457)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG---
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH---
Confidence 88999998765 889999999999998631 1 1 13689999999999999999999999999998542
Q ss_pred ChhhHHHHHHcCCHHHHHHHHhcCCh------hHHHHHHHHHHHHhcCCCC-hHHHHhccchhhhhhccccccccccCCc
Q 037612 568 HSDHSKAIISAGGAKHLVQLVYFGEQ------IVQLSALVLLCYIALHVPD-SEDLAQAEVLTVLEWTSKQSHMTQDETV 640 (663)
Q Consensus 568 ~~~~~~~Iv~~ggi~~Lv~LL~~~~~------~~q~~Al~~L~~la~~~~~-~~~i~~~~vl~~L~~~~~~~~~~q~~~~ 640 (663)
+.+.++..|+|++||+||..+++ .++..++.+|+++..+.++ ...+.++|+++.|+ .+..++..
T Consensus 363 ---~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~------~L~~~~~~ 433 (457)
T 1xm9_A 363 ---LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII------NLCRSSAS 433 (457)
T ss_dssp ---GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH------HHHHCTTC
T ss_pred ---HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH------HHHcCCCc
Confidence 34456667999999999998753 4677899999999766555 45688999999998 44444347
Q ss_pred HHHHHHHHHHHHhhhh
Q 037612 641 DPLLQDAKSRLELYQS 656 (663)
Q Consensus 641 ~~l~~~a~~~le~~~~ 656 (663)
+.++.+|...|+.|..
T Consensus 434 ~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 434 PKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8899999999999876
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=334.43 Aligned_cols=381 Identities=17% Similarity=0.107 Sum_probs=283.3
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC--CCcchHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR--DPESVEHM 226 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~--~~~~~~~i 226 (663)
..+|..|++ ++.+.|.+||++|.+|+..++.+|..|++.|+||+||+||++++..+|++|+|||.||+. +++|+..|
T Consensus 51 ~~LV~~L~s-~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 51 PEVIAMLGF-RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 344889999 999999999999999998889999999999999999999999999999999999999997 48999999
Q ss_pred HHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc---cCccchhhhHHHhhhhhhHH
Q 037612 227 IHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~---sgt~~~~s~~~v~~~~~sl~ 302 (663)
+++|+||+||++|++ ++.+++++++++|.||+. +++++..|++ ++||+||.||. +|........ .+ +
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~----~k--~- 200 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED----CK--P- 200 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------------
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccc----cc--c-
Confidence 999999999999997 578999999999999997 5788888886 57999999983 2211000000 00 0
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
.......++.++.+... |+. ....
T Consensus 201 ----------------------------------------~~~~d~~V~~nAa~~L~---------NLs-------~~~~ 224 (584)
T 3l6x_A 201 ----------------------------------------RHIEWESVLTNTAGCLR---------NVS-------SERS 224 (584)
T ss_dssp -----------------------------------------CCCCHHHHHHHHHHHH---------HHT-------SSCH
T ss_pred ----------------------------------------cccccHHHHHHHHHHHH---------HHh-------cCCH
Confidence 00001122222222110 000 0000
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHH------------HHHHHHHHHHHHHHhcCChhh-------------
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATK------------AYMKAMAARALWHLAKGNSPI------------- 437 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~------------~~lk~~Aa~AL~~La~gn~~~------------- 437 (663)
...+.....+|.+ ++-+. .+.++.|..+|+||+.+....
T Consensus 225 ---------~~R~~i~~~~Gli-------~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 225 ---------EARRKLRECDGLV-------DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp ---------HHHHHHHHSTTHH-------HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred ---------HHHHHHHHcCCcH-------HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 0011111112221 22221 146678999999999862111
Q ss_pred ------------hHHHhhhccHHHHHHHhh-cCChhHHHHHHHHHHHHhhhhhcc-HHHHhhhcCCCCchhHhHHHHHHH
Q 037612 438 ------------CRSITESRALLCFAVLLE-KGPEDVQYNSAMALMEITAVAEKD-AELRRSAFKPNAPACKAVVDQLFR 503 (663)
Q Consensus 438 ------------~~~I~esgal~~L~~LL~-~~~~~vq~~aa~AL~~i~a~a~~~-~~~rr~a~~~~~~a~~~vv~qL~~ 503 (663)
...+.+.++++.|+.||+ +.+++++++|+|||+++|++.... ..+|+ ++.. ..+++.|++
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~-~v~~-----~~glp~Lv~ 362 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS-ALRQ-----EKALSAIAD 362 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH-HHTS-----HHHHHHHHH
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH-HHHH-----cCcHHHHHH
Confidence 112234567788999996 567999999999999998764222 23332 2221 357899999
Q ss_pred HhhhcCcchhhHHHHHHHHhhhchhhH---hhccHHHHHHhcccC--------CHHHHHHHHHHHHhcccCCCCCChhhH
Q 037612 504 IIEKADSDLLIPCIKAVGNLARTFKAT---ETRMIVPLVKLLDER--------EAEVSREASIALTKFACSDNYLHSDHS 572 (663)
Q Consensus 504 ll~~~~~~l~~~a~~aLg~La~~~~~~---e~~~I~pLV~LL~~~--------~~~v~~eAa~AL~~la~~~~~~~~~~~ 572 (663)
|+.+++++++..++.+|+||+....+. +.++||+||++|..+ ..++...|+++|.|+++++ +++.
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~----~~~~ 438 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN----LEAA 438 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC----HHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC----HHHH
Confidence 999999999999999999999875543 368999999999766 4788999999999998654 6889
Q ss_pred HHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCChHHHHhccc
Q 037612 573 KAIISAGGAKHLVQLVYFG--EQIVQLSALVLLCYIALHVPDSEDLAQAEV 621 (663)
Q Consensus 573 ~~Iv~~ggi~~Lv~LL~~~--~~~~q~~Al~~L~~la~~~~~~~~i~~~~v 621 (663)
+.|+++|||++|++||+++ ++.++..|..+||++..|.+.+..+.++|.
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 9999999999999999987 777888999999999998888888887653
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=322.77 Aligned_cols=412 Identities=14% Similarity=0.114 Sum_probs=278.6
Q ss_pred cHHHHHHHHHhhhcc-----hHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHh
Q 037612 100 AFRKMSSQLENSIGD-----VSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSL 174 (663)
Q Consensus 100 ~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~L 174 (663)
+++.++..|.+...+ ...|-+++...++... .+...+.+.. ++..|++ ++.+.+..|+++|.+|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~------~i~~~g~i~~----Lv~lL~s-~~~~~~~~A~~aL~nL 71 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ------QVYQLGGICK----LVDLLRS-PNQNVQQAAAGALRNL 71 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHH------HHHHTTHHHH----HHHHTTS-SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH------HHHHcCCHHH----HHHHHcC-CCHHHHHHHHHHHHHH
Confidence 578889999764332 3444455532221000 1112223332 3889999 9999999999999999
Q ss_pred hcCChhhHHHHHhcCChHHHHHhhc-cCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh--------ccC---
Q 037612 175 ARDNDRYGKLIIEEGGVGPLLKLVK-EGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL--------KEG--- 242 (663)
Q Consensus 175 a~~~~~~~~~Ive~G~Ip~Lv~LL~-sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL--------~s~--- 242 (663)
+.++++++..|++.|+||+|+++|+ ++++..|+.|+|+|+||+.+++++..|++ |+||+|+++| +++
T Consensus 72 a~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~ 150 (457)
T 1xm9_A 72 VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNM 150 (457)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC------
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccch
Confidence 9988999999999999999999999 88999999999999999999999999999 9999999999 333
Q ss_pred -----ChhHHHHHHHHHHHHhcCChhHHHHHHhC-CcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCcccc
Q 037612 243 -----PMKVQAVVAWAVSELAGNYPKCQDLFAQH-NIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANA 316 (663)
Q Consensus 243 -----~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~-g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~ 316 (663)
+++++..|+|+|+||+.+ ++++..+.+. |+||+|+.+|+++....+.. .+ .....+.+..+.+.
T Consensus 151 ~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~-----~~-~~e~a~~~L~nLs~--- 220 (457)
T 1xm9_A 151 SREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCD-----DK-SVENCMCVLHNLSY--- 220 (457)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTT-----CT-THHHHHHHHHHHTT---
T ss_pred hcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCc-----hH-HHHHHHHHHHhccc---
Confidence 345666999999999986 8999999997 99999999998642100000 00 00000000000000
Q ss_pred CCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccc
Q 037612 317 NGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQH 396 (663)
Q Consensus 317 ~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~ 396 (663)
. . ..+ ...+.. ......+....
T Consensus 221 ~---~---~~~--------------------------------------------------~~~~~~-~~~~~~~~~~~- 242 (457)
T 1xm9_A 221 R---L---DAE--------------------------------------------------VPTRYR-QLEYNARNAYT- 242 (457)
T ss_dssp T---H---HHH--------------------------------------------------SCCHHH-HHHHTC------
T ss_pred c---h---hcc--------------------------------------------------Ccchhh-hcccccccccc-
Confidence 0 0 000 000000 00000000000
Q ss_pred cccccCCcCCCCccCChhHHHHHHHHHHHHHHHHh----cCChhhhHHHhhhccHHHHHHHhhcC-ChhHHHHHHHHHHH
Q 037612 397 GLSNYGANTKGRELEDPATKAYMKAMAARALWHLA----KGNSPICRSITESRALLCFAVLLEKG-PEDVQYNSAMALME 471 (663)
Q Consensus 397 ~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La----~gn~~~~~~I~esgal~~L~~LL~~~-~~~vq~~aa~AL~~ 471 (663)
.....|..... . .+.+.. -+.+. ..++.....+.+.+++++|+.||++. ++++++.|+|||++
T Consensus 243 ~~~~~~~~~~~------~--~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~n 310 (457)
T 1xm9_A 243 EKSSTGCFSNK------S--DKMMNN----NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310 (457)
T ss_dssp -----------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cccccchhhcc------c--hhhhhc----cccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 00000000000 0 000000 00011 12334556677899999999999865 68999999999999
Q ss_pred Hhhhhhcc-HHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH---hhccHHHHHHhcccCC-
Q 037612 472 ITAVAEKD-AELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT---ETRMIVPLVKLLDERE- 546 (663)
Q Consensus 472 i~a~a~~~-~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~---e~~~I~pLV~LL~~~~- 546 (663)
||++.... ..+.|.++.. .++++.|++++.+++++++..++.+|.+|+...... +.++|||||++|...+
T Consensus 311 l~~~~~~~~~~~~~~~v~~-----~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~ 385 (457)
T 1xm9_A 311 LTASKGLMSSGMSQLIGLK-----EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTG 385 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTT-----SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCS
T ss_pred hccCcCcchHHHHHHHHHH-----cCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCC
Confidence 99775433 2343333322 246899999999999999999999999999876554 3579999999998764
Q ss_pred -----HHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCC
Q 037612 547 -----AEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 547 -----~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L~~la~~~~~ 612 (663)
+++...+.++|.|+..++ .++...|.+.||+++|++|++++ ++.++..|.++|.++..|.+-
T Consensus 386 ~~~~~~~v~~~~l~~l~ni~~~~----~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 386 NTSNSEDILSSACYTVRNLMASQ----PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp CSTTHHHHHHHHHHHHHHHHTTC----THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred CCCCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence 468889999999997654 47888999999999999999999 888888999999998766554
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=317.71 Aligned_cols=311 Identities=15% Similarity=0.140 Sum_probs=258.0
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCh----------HHHHHhhccCC--hH-----HH-------HHHHHHHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGV----------GPLLKLVKEGK--PE-----GQ-------ENAARAIG 214 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~I----------p~Lv~LL~sg~--~~-----~q-------~~Aa~AL~ 214 (663)
|+.+.+.+|+|+|.|++..++...+...+.|++ +.++++|.+.. .+ .. ..|+|+|+
T Consensus 94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 173 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHH
Confidence 347999999999999999888878888888888 77888887642 22 33 39999999
Q ss_pred HhcCCCcchHHHHHcCchHHHHHhhcc-----------CChhHHHHHHHHHHHHhcCChhHHHHHHh-CCcHHHHHHHhc
Q 037612 215 LLGRDPESVEHMIHSGVCLVFAKILKE-----------GPMKVQAVVAWAVSELAGNYPKCQDLFAQ-HNIIRLLVGHLA 282 (663)
Q Consensus 215 nLs~~~~~~~~iv~aGaIp~Lv~lL~s-----------~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~-~g~I~~LV~LL~ 282 (663)
||+.++++|..|++.|++++|+++|.. .++.+|..|+|+|.||+.+++..+..+.. .|+||+||.||+
T Consensus 174 nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~ 253 (458)
T 3nmz_A 174 KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253 (458)
T ss_dssp HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh
Confidence 999999999999999999999999952 23678999999999999877778887765 566999999997
Q ss_pred cCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCC
Q 037612 283 FETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTK 362 (663)
Q Consensus 283 sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~ 362 (663)
+++
T Consensus 254 s~~----------------------------------------------------------------------------- 256 (458)
T 3nmz_A 254 SES----------------------------------------------------------------------------- 256 (458)
T ss_dssp CSC-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 542
Q ss_pred cccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC-ChhhhHHH
Q 037612 363 PVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG-NSPICRSI 441 (663)
Q Consensus 363 ~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g-n~~~~~~I 441 (663)
+ .++..|++||++|+.+ ++.+...|
T Consensus 257 --------------------------------------------------~----~v~~~A~~aL~nLs~~~~~~~k~~I 282 (458)
T 3nmz_A 257 --------------------------------------------------E----DLQQVIASVLRNLSWRADVNSKKTL 282 (458)
T ss_dssp --------------------------------------------------H----HHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred --------------------------------------------------H----HHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 1 2477899999999996 67888999
Q ss_pred hhhccHHHHHHH-hhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcc----hhhHH
Q 037612 442 TESRALLCFAVL-LEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSD----LLIPC 516 (663)
Q Consensus 442 ~esgal~~L~~L-L~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~----l~~~a 516 (663)
.+.|+++.|+.+ +++++.+++++++.|||+|+... .+.+..+. ...++++.|++++.+.++. ++..+
T Consensus 283 ~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~---~~nk~~I~-----~~~Gal~~Lv~LL~~~~~~~~~~v~~~A 354 (458)
T 3nmz_A 283 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHC---TENKADIC-----AVDGALAFLVGTLTYRSQTNTLAIIESG 354 (458)
T ss_dssp HHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC---HHHHHHHH-----HSTTHHHHHHHHTTCCCSSSTTHHHHHH
T ss_pred HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCC---HHHHHHHH-----HhcCcHHHHHHHhcCCCCcchHHHHHHH
Confidence 999999999997 56678899999999999998632 22232211 0246899999999987653 88999
Q ss_pred HHHHHHhhh----chhh----HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHH
Q 037612 517 IKAVGNLAR----TFKA----TETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLV 588 (663)
Q Consensus 517 ~~aLg~La~----~~~~----~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL 588 (663)
+.+|.||+. +... .+.++||+||.+|.+++++++++|+|||+|++.+. +++..+|++.|||++|+.||
T Consensus 355 ~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~----~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 355 GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN----PKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC----HHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHH
Confidence 999999985 3333 34689999999999999999999999999998543 58888999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHhcCCCC
Q 037612 589 YFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 589 ~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
+++++.++..|+++|.+|+.+.+.
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred hCCCHHHHHHHHHHHHHHHcCCHh
Confidence 999998999999999999877654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=309.47 Aligned_cols=401 Identities=18% Similarity=0.211 Sum_probs=315.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCC-hHHHHHHHHHHHHhcCC-CcchH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEGK-PEGQENAARAIGLLGRD-PESVE 224 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg~-~~~q~~Aa~AL~nLs~~-~~~~~ 224 (663)
+..++..|++ ++.+.+..|+++|.+++..++ .++..+++.|+||+|+++|++++ +..|+.|+|+|++|+.+ ++++.
T Consensus 76 l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 4455889999 999999999999999976543 67888999999999999999887 99999999999999974 78999
Q ss_pred HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHH
Q 037612 225 HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAV 304 (663)
Q Consensus 225 ~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~l 304 (663)
.+++.|+||+|+++|++++++++..|+|+|++|+.+++..+..+.+.|++++|+.+|........... ...++
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~-------a~~~L 227 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRN-------ATWTL 227 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHH-------HHHHH
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHH-------HHHHH
Confidence 99999999999999999999999999999999999888999999999999999999953321111111 11111
Q ss_pred HHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCc
Q 037612 305 VVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDN 384 (663)
Q Consensus 305 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~ 384 (663)
....... +.. ....+ .++. +
T Consensus 228 ~~L~~~~-------~~~-------------------------~~~~~---------------------------~~~l-~ 247 (528)
T 4b8j_A 228 SNFCRGK-------PQP-------------------------SFEQT---------------------------RPAL-P 247 (528)
T ss_dssp HHHHCSS-------SCC-------------------------CHHHH---------------------------TTHH-H
T ss_pred HHHHcCC-------CCC-------------------------cHHHH---------------------------HHHH-H
Confidence 1110000 000 00000 0000 0
Q ss_pred cccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHH
Q 037612 385 NVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYN 464 (663)
Q Consensus 385 ~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~ 464 (663)
.+...+ ..+|+ .++..|+++|++|+.++......+.+.|+++.|+.+|.+++++++..
T Consensus 248 --------~L~~lL----------~~~~~----~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~ 305 (528)
T 4b8j_A 248 --------ALARLI----------HSNDE----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIP 305 (528)
T ss_dssp --------HHHHHT----------TCCCH----HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred --------HHHHHH----------CCCCH----HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHH
Confidence 000001 11344 35889999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc-CcchhhHHHHHHHHhhhchhh-----HhhccHHHH
Q 037612 465 SAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA-DSDLLIPCIKAVGNLARTFKA-----TETRMIVPL 538 (663)
Q Consensus 465 aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~-~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pL 538 (663)
|+++|.+|+... .+.++..+. .++++.|+.++.+. ++.++..|+.+|++|+..... .+.++||+|
T Consensus 306 a~~~L~nl~~~~---~~~~~~~~~------~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 306 ALRTVGNIVTGD---DAQTQCIID------HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL 376 (528)
T ss_dssp HHHHHHHHTTSC---HHHHHHHHT------TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHH------hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Confidence 999999998543 344443332 35789999999998 889999999999999874322 245899999
Q ss_pred HHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC------
Q 037612 539 VKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD------ 612 (663)
Q Consensus 539 V~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~------ 612 (663)
+++|.+.+++++++|+|||+|++..++ +++...+++.|++++|+.+|..+++.++..++.+|+++....+.
T Consensus 377 ~~lL~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~ 453 (528)
T 4b8j_A 377 VNLLQTAEFDIKKEAAWAISNATSGGS---HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA 453 (528)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999997643 57888999999999999999999998899999999999754322
Q ss_pred ------hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhhc
Q 037612 613 ------SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQSR 657 (663)
Q Consensus 613 ------~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~~ 657 (663)
...+.+.|++..++ ..+.+.+++++.+|...++.|++.
T Consensus 454 ~~~~~~~~~i~~~~~~~~l~-------~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 454 GDVNVFSQMIDEAEGLEKIE-------NLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp CSCCHHHHHHHHTTHHHHHH-------HGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred ccccHHHHHHHHCCcHHHHH-------HHHcCCCHHHHHHHHHHHHHHCCC
Confidence 44567777777776 235678889999999999999873
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=307.00 Aligned_cols=274 Identities=15% Similarity=0.158 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-----------CChHHHHHHHHHHHHhcCCCc-chHHHHH
Q 037612 161 LEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE-----------GKPEGQENAARAIGLLGRDPE-SVEHMIH 228 (663)
Q Consensus 161 ~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s-----------g~~~~q~~Aa~AL~nLs~~~~-~~~~iv~ 228 (663)
.+.+.+|+++|.+++.+ +++|+.|++.|++++|+.||.+ .++..|++|+|+|.||+.+++ ++..|..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666899999999976 8899999999999999999953 236799999999999997654 7777765
Q ss_pred c-CchHHHHHhhccCChhHHHHHHHHHHHHhcC-ChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 229 S-GVCLVFAKILKEGPMKVQAVVAWAVSELAGN-YPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 229 a-GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~-~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
. |+||+||++|+++++++++.|+|+|.||+.. ++++|..+.+.|+||+||++|....
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--------------------- 183 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--------------------- 183 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---------------------
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---------------------
Confidence 5 5599999999999999999999999999974 5789999999999999999863210
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
T Consensus 184 -------------------------------------------------------------------------------- 183 (354)
T 3nmw_A 184 -------------------------------------------------------------------------------- 183 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHh-hhccHHHHHHHhhcCCh----hH
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSIT-ESRALLCFAVLLEKGPE----DV 461 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~-esgal~~L~~LL~~~~~----~v 461 (663)
++ .+++.|+.|||+|+.+++.++..|. +.|++++|+.+|+++++ ++
T Consensus 184 -------------------------~~----~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v 234 (354)
T 3nmw_A 184 -------------------------KE----STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 234 (354)
T ss_dssp -------------------------CH----HHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHH
T ss_pred -------------------------CH----HHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHH
Confidence 11 2467889999999998889988888 79999999999998765 59
Q ss_pred HHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHh
Q 037612 462 QYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKL 541 (663)
Q Consensus 462 q~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~L 541 (663)
+++|+|+|++|+.....+++.|+. + .+.++||+||++
T Consensus 235 ~~~A~~aL~nLs~~~a~~~~~~~~------------------i-------------------------~~~g~i~~Lv~l 271 (354)
T 3nmw_A 235 IESGGGILRNVSSLIATNEDHRQI------------------L-------------------------RENNCLQTLLQH 271 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH------------------H-------------------------HTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCHHHHHH------------------H-------------------------HHcCCHHHHHHH
Confidence 999999999998511112333321 1 135789999999
Q ss_pred cccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 542 LDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 542 L~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
|++++.+++++|+|||+|++.+. +++...|++.|+|++|++||+++++.++..|+++|++|+.+.++
T Consensus 272 L~~~~~~v~~~A~~aL~nLa~~~----~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 272 LKSHSLTIVSNACGTLWNLSARN----PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSC----HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HcCCChHHHHHHHHHHHHHhCCC----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998543 57888999999999999999999998999999999999987665
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=305.36 Aligned_cols=363 Identities=16% Similarity=0.140 Sum_probs=276.9
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc------------CChHHHHHHHHHHHHhc-
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE------------GKPEGQENAARAIGLLG- 217 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s------------g~~~~q~~Aa~AL~nLs- 217 (663)
++..|.+ .+.+ +....|.++... ++.+..+++.|+||.||++|+. +++..|.+|+|||.||+
T Consensus 37 l~~~~~~-~~~~---~~~~~ll~~~~~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~ 111 (458)
T 3nmz_A 37 LLSMLGT-HDKD---DMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH 111 (458)
T ss_dssp ---------CCH---HHHHHHHHHHSS-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCHH---HHHHHHHHHHcC-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc
Confidence 3555555 4433 478899999875 5578899999999999999996 34799999999999999
Q ss_pred CCCcchHHHHHcCch----------HHHHHhhccCC--hh-----HHH-------HHHHHHHHHhcCChhHHHHHHhCCc
Q 037612 218 RDPESVEHMIHSGVC----------LVFAKILKEGP--MK-----VQA-------VVAWAVSELAGNYPKCQDLFAQHNI 273 (663)
Q Consensus 218 ~~~~~~~~iv~aGaI----------p~Lv~lL~s~~--~~-----vq~-------~Aa~aL~nLA~~~~~~r~~i~~~g~ 273 (663)
++++.+....+.|++ +.++++|++.. ++ +++ +|+|+|.||+. ++++|+.+.+.|+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~ 190 (458)
T 3nmz_A 112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGG 190 (458)
T ss_dssp HSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTH
T ss_pred cCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCC
Confidence 578999999999999 88888887652 33 444 99999999986 5899999999999
Q ss_pred HHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHh
Q 037612 274 IRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTN 353 (663)
Q Consensus 274 I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 353 (663)
+++|+.||..+. . . +
T Consensus 191 l~~Lv~LL~~~~----~---~-----------~----------------------------------------------- 205 (458)
T 3nmz_A 191 LQAIAELLQVDC----E---M-----------Y----------------------------------------------- 205 (458)
T ss_dssp HHHHHHHHHHHH----H---H-----------S-----------------------------------------------
T ss_pred HHHHHHHHhhhh----c---c-----------c-----------------------------------------------
Confidence 999999996421 0 0 0
Q ss_pred hhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC
Q 037612 354 TMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG 433 (663)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g 433 (663)
+. . .+. ....++..|+++|.||+.+
T Consensus 206 ---------------------------~~----~-----------------------~~~-~~~~l~~~Aa~aL~nLa~~ 230 (458)
T 3nmz_A 206 ---------------------------GL----T-----------------------NDH-YSITLRRYAGMALTNLTFG 230 (458)
T ss_dssp ---------------------------TT----C-----------------------CCH-HHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------cc----c-----------------------cCC-CCHHHHHHHHHHHHHHhCC
Confidence 00 0 000 0124799999999999999
Q ss_pred ChhhhHHHhh-hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh-hhcCcc
Q 037612 434 NSPICRSITE-SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII-EKADSD 511 (663)
Q Consensus 434 n~~~~~~I~e-sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll-~~~~~~ 511 (663)
+..+...|.+ .|+++.|+.||+++++++|.+|+|||++|+... +.+.|.... -.++++.|++++ .+++++
T Consensus 231 ~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~--~~~~k~~I~------~~GaI~~LV~lLl~s~~~~ 302 (458)
T 3nmz_A 231 DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA--DVNSKKTLR------EVGSVKALMECALEVKKES 302 (458)
T ss_dssp CHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC--CHHHHHHHH------HTTHHHHHHHHHTTCCSHH
T ss_pred CcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC--CHHHHHHHH------HcCCHHHHHHHHhcCCCHH
Confidence 8878777754 566999999999999999999999999997541 233343211 136899999975 456788
Q ss_pred hhhHHHHHHHHhhh-chhhH-----hhccHHHHHHhcccCCH----HHHHHHHHHHHhccc--CCCCCChhhHHHHHHcC
Q 037612 512 LLIPCIKAVGNLAR-TFKAT-----ETRMIVPLVKLLDEREA----EVSREASIALTKFAC--SDNYLHSDHSKAIISAG 579 (663)
Q Consensus 512 l~~~a~~aLg~La~-~~~~~-----e~~~I~pLV~LL~~~~~----~v~~eAa~AL~~la~--~~~~~~~~~~~~Iv~~g 579 (663)
++.+++.+||||+. .-.++ +.++||+||++|...++ +++++|+|+|.|++. .+ .+++...|++.|
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~G 379 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENN 379 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHcc
Confidence 99999999999998 32321 46899999999976654 599999999999985 12 257788899999
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhc-CCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhh
Q 037612 580 GAKHLVQLVYFGEQIVQLSALVLLCYIAL-HVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELY 654 (663)
Q Consensus 580 gi~~Lv~LL~~~~~~~q~~Al~~L~~la~-~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~ 654 (663)
++++|++||++++..+|..|+++|+|++. +..+...|.++|+++.|..-.. . .++.++.-+..|+..|-.+
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~-s---~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-S---KHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT-C---SSHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh-C---CCHHHHHHHHHHHHHHHcC
Confidence 99999999999998899999999999995 4455677999999999983221 1 2445666777777776543
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=323.59 Aligned_cols=312 Identities=16% Similarity=0.164 Sum_probs=263.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-----------------------------hhH---HHHHhcCChHHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDND-----------------------------RYG---KLIIEEGGVGPLLK 196 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-----------------------------~~~---~~Ive~G~Ip~Lv~ 196 (663)
..||.+|++ ++...+..|+++|.||+.++| .++ +.|++.|+||+|+.
T Consensus 424 p~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~ 502 (810)
T 3now_A 424 HALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCA 502 (810)
T ss_dssp HHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHH
Confidence 345888999 999999999999999998653 123 78899999999999
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcC-ChhHHHHH---HhCC
Q 037612 197 LVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN-YPKCQDLF---AQHN 272 (663)
Q Consensus 197 LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~-~~~~r~~i---~~~g 272 (663)
||+++++.+|+.|+|+|+||+.+++++..|+++|+||+|+.+|+++++.+|+.|+|||+||+.+ +++ ..+ ...|
T Consensus 503 LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~--~~~~~~~~~~ 580 (810)
T 3now_A 503 LAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE--VSFSGQRSLD 580 (810)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH--HHTTTHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh--hhhcchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999863 332 211 1136
Q ss_pred cHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHH
Q 037612 273 IIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVT 352 (663)
Q Consensus 273 ~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 352 (663)
+||||+.||.++.
T Consensus 581 aIppLv~LL~~~~------------------------------------------------------------------- 593 (810)
T 3now_A 581 VIRPLLNLLQQDC------------------------------------------------------------------- 593 (810)
T ss_dssp THHHHHHTTSTTS-------------------------------------------------------------------
T ss_pred HHHHHHHHhCCCC-------------------------------------------------------------------
Confidence 9999999996331
Q ss_pred hhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhc
Q 037612 353 NTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAK 432 (663)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~ 432 (663)
+ ...+..|++||.||+.
T Consensus 594 -----------------------------------------------------------~----~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 594 -----------------------------------------------------------T----ALENFESLMALTNLAS 610 (810)
T ss_dssp -----------------------------------------------------------C----HHHHHHHHHHHHHHTT
T ss_pred -----------------------------------------------------------c----HHHHHHHHHHHHHHhc
Confidence 0 0125568899999999
Q ss_pred CChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcch
Q 037612 433 GNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDL 512 (663)
Q Consensus 433 gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l 512 (663)
+++.++..|.+.|+++.|+.||.++++.+|..|+++|+||+... +.+.. |..+ .++++.|+.++++.+.++
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~----~~~~~-~v~~----~g~l~~Lv~LL~s~d~~v 681 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE----DVIKM-FEGN----NDRVKFLALLCEDEDEET 681 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH----HHHHH-HHSS----SSHHHHHHHGGGCSSHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----HHHHH-HHhc----cCcHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999997543 44443 3322 257889999999999999
Q ss_pred hhHHHHHHHHhhhc-hhh----Hh-hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH
Q 037612 513 LIPCIKAVGNLART-FKA----TE-TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ 586 (663)
Q Consensus 513 ~~~a~~aLg~La~~-~~~----~e-~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~ 586 (663)
+..++.||++|+.. ... .+ .++|||||+||++++++++++|+|||.|+++++ .++.++|+++||+++|+.
T Consensus 682 q~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s----~e~~~~l~e~G~i~~L~~ 757 (810)
T 3now_A 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG----EEIAKKLFETDIMELLSG 757 (810)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC----HHHHHHHHTSTHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC----HHHHHHHHHCCCHHHHHH
Confidence 99999999999873 221 23 689999999999999999999999999998753 578899999999999999
Q ss_pred HHhcC---ChhHHHHHHHHHHHH
Q 037612 587 LVYFG---EQIVQLSALVLLCYI 606 (663)
Q Consensus 587 LL~~~---~~~~q~~Al~~L~~l 606 (663)
||+.+ ++.+...|+.+|.++
T Consensus 758 LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 758 LGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp SCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHhCcccCcHHHHHHHHHHHHHH
Confidence 99866 455666699999777
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=295.64 Aligned_cols=404 Identities=17% Similarity=0.188 Sum_probs=314.0
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcCC-Ccc
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARD-NDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGRD-PES 222 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~-~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~-~~~ 222 (663)
..+..++..|++ ++.+.+..|+.+|.++... ++.++..+++.|+||+|+++|+++ ++.+|+.|+|+|.+|+.+ +++
T Consensus 87 ~~i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 345667889999 9999999999999998654 245678889999999999999997 799999999999999974 678
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
+..+++.|++|+|+++|+++++++++.|+|+|++|+.++++.+..+.+.|++++|+.+|.+... .-... ++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~v~~~-------a~~ 237 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIRT-------ATW 237 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH-HHHHH-------HHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCH-HHHHH-------HHH
Confidence 8899999999999999999999999999999999998888999999999999999999986421 10011 111
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
++........ +.. . .... ..++.
T Consensus 238 ~L~~L~~~~~------~~~------------------------~-~~~~--~~~l~------------------------ 260 (530)
T 1wa5_B 238 TLSNLCRGKK------PQP------------------------D-WSVV--SQALP------------------------ 260 (530)
T ss_dssp HHHHHHCCSS------SCC------------------------C-HHHH--GGGHH------------------------
T ss_pred HHHHHhCCCC------CCC------------------------c-HHHH--HhHHH------------------------
Confidence 1111111000 000 0 0000 00000
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHH
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQ 462 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq 462 (663)
.+...+ ..+|+ .++..|+++|++|+.+++.....+.+.|+++.|+.+|.+.+.+++
T Consensus 261 ----------~L~~lL----------~~~d~----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~ 316 (530)
T 1wa5_B 261 ----------TLAKLI----------YSMDT----ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316 (530)
T ss_dssp ----------HHHHHT----------TCCCH----HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred ----------HHHHHH----------cCCCH----HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhH
Confidence 011111 11344 468999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----HhhccHHH
Q 037612 463 YNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRMIVP 537 (663)
Q Consensus 463 ~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~p 537 (663)
..|+++|++|+... ++..+..+. .++++.|+.++.+.++.++..++.+|++|+..... .+.+++|+
T Consensus 317 ~~a~~~L~~l~~~~---~~~~~~~~~------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~ 387 (530)
T 1wa5_B 317 TPALRAVGNIVTGN---DLQTQVVIN------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 387 (530)
T ss_dssp HHHHHHHHHHTTSC---HHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHH------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 99999999997543 233332221 35889999999999899999999999999864322 24689999
Q ss_pred HHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC-----
Q 037612 538 LVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD----- 612 (663)
Q Consensus 538 LV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~----- 612 (663)
|+++|++.+++++++|+|||++++.+++. .+++...+++.|++++|+.+|..+++.++..++.+|.++....+.
T Consensus 388 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~ 466 (530)
T 1wa5_B 388 LVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR 466 (530)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 99999999999999999999999876421 126788999999999999999999998999999999999754432
Q ss_pred -------hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 613 -------SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 613 -------~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
...+.+.|++..|+ . ++.+....++.+|...++.|+.
T Consensus 467 ~~~~~~~~~~l~~~g~~~~L~------~-L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 467 GLNINENADFIEKAGGMEKIF------N-CQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp TCSSCHHHHHHHHTTHHHHHH------G-GGGCSCHHHHHHHHHHHHHHSS
T ss_pred cccccHHHHHHHHcCcHHHHH------H-HHcCCCHHHHHHHHHHHHHHCC
Confidence 24477788888887 3 2455778899999999999886
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=299.88 Aligned_cols=481 Identities=16% Similarity=0.119 Sum_probs=320.0
Q ss_pred ccccHHHHHHHHHhhhc-----chHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCC-CHHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSIG-----DVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAG-SLEHKSDAAAS 170 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~~-----~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G-~~e~k~~AA~~ 170 (663)
..+.++.++.+|..... .+..|.+++....++. .+.... ..+..++..|+. + +.+.+..|+.+
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~-------~~~~~~---~~i~~Lv~~L~~-~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-------AIMRSP---QMVSAIVRTMQN-TNDVETARCTAGT 83 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHH-------HHHTCH---HHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHH-------HHHhCc---chHHHHHHHHhc-CCCHHHHHHHHHH
Confidence 56789999999864221 1444545554322110 000110 123345778887 7 88999999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHHHHHhhccCChhHHHH
Q 037612 171 LVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAV 249 (663)
Q Consensus 171 L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~ 249 (663)
|.+|+.+ +.++..|++.|+||+|+++|+++++.+|+.|+++|.||+.+ +.++..+++.|++|.|+++|++++++++..
T Consensus 84 L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 162 (529)
T 1jdh_A 84 LHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162 (529)
T ss_dssp HHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 9999876 66999999999999999999999999999999999999975 677888889999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhh
Q 037612 250 VAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDK 329 (663)
Q Consensus 250 Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~ 329 (663)
++.+|.+|+..+++.+..+.+.|+++.|+.+|++++... ..+.. ...+...... +.+...+.
T Consensus 163 ~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~-~~~~a------~~~L~~l~~~-------~~~~~~~~---- 224 (529)
T 1jdh_A 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK-LLWTT------SRVLKVLSVC-------SSNKPAIV---- 224 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH-HHHHH------HHHHHHHTTS-------TTHHHHHH----
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHH-HHHHH------HHHHHHHhcC-------cccHHHHH----
Confidence 999999999878899999999999999999998764211 11111 1111100000 00000000
Q ss_pred hcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCc
Q 037612 330 QYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRE 409 (663)
Q Consensus 330 ~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re 409 (663)
....+. ++-.-......++...+.+... ++...... ..+.. .+ ++ .+... ..
T Consensus 225 -~~g~~~-~L~~ll~~~~~~~~~~a~~~L~---------~l~~~~~~--~~~~~-~~-i~---~L~~l----------l~ 276 (529)
T 1jdh_A 225 -EAGGMQ-ALGLHLTDPSQRLVQNCLWTLR---------NLSDAATK--QEGME-GL-LG---TLVQL----------LG 276 (529)
T ss_dssp -HTTHHH-HHHTTTTSSCHHHHHHHHHHHH---------HHHTTCTT--CSCCH-HH-HH---HHHHH----------TT
T ss_pred -HCCCHH-HHHHHHhCCChHHHHHHHHHHH---------HHhcCChh--hHHHH-hH-HH---HHHHH----------Hc
Confidence 000000 0000000011233334443331 01000000 00000 00 00 01111 12
Q ss_pred cCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC--ChhHHHHHHHHHHHHhhhhhccHHHHhhhc
Q 037612 410 LEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG--PEDVQYNSAMALMEITAVAEKDAELRRSAF 487 (663)
Q Consensus 410 ~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~--~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~ 487 (663)
.+|++ ++..|+++|++|+.++..++..+.+.|+++.|+.+|.+. ++++++.++++|++|+....++...|+...
T Consensus 277 ~~~~~----v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~ 352 (529)
T 1jdh_A 277 SDDIN----VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352 (529)
T ss_dssp CSCHH----HHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred CCCHH----HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 24554 588999999999999999999999999999999999863 379999999999999765433333444322
Q ss_pred CCCCchhHhHHHHHHHHhhhcCc-chhhHHHHHHHHhhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHHHh--c
Q 037612 488 KPNAPACKAVVDQLFRIIEKADS-DLLIPCIKAVGNLARTFKAT----ETRMIVPLVKLLDEREAEVSREASIALTK--F 560 (663)
Q Consensus 488 ~~~~~a~~~vv~qL~~ll~~~~~-~l~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~--l 560 (663)
. .++++.|++++.+.++ .++..++.+|++++...... +.++||+|+++|++.+++++++|+|+++| +
T Consensus 353 ~------~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~ 426 (529)
T 1jdh_A 353 L------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426 (529)
T ss_dssp H------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------C
T ss_pred H------cCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhh
Confidence 1 3468999999998874 89999999999999764443 35789999999999999999999999888 3
Q ss_pred ccCCCC---------------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhh
Q 037612 561 ACSDNY---------------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625 (663)
Q Consensus 561 a~~~~~---------------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L 625 (663)
..+++. .++++...|.+.|++++|+.++.++++.++..|+.+|++++.+.+....+.+.|+++.|
T Consensus 427 ~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L 506 (529)
T 1jdh_A 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506 (529)
T ss_dssp BTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred hccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH
Confidence 322110 02355567999999999999999999989999999999998665556778899999999
Q ss_pred hhccccccccccCCcHHHHHHHHHHHH
Q 037612 626 EWTSKQSHMTQDETVDPLLQDAKSRLE 652 (663)
Q Consensus 626 ~~~~~~~~~~q~~~~~~l~~~a~~~le 652 (663)
+ .. +++...+++..|...|+
T Consensus 507 ~------~l-~~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 507 T------EL-LHSRNEGVATYAAAVLF 526 (529)
T ss_dssp H------HG-GGCSSHHHHHHHHHHHH
T ss_pred H------HH-hcCCCHHHHHHHHHHHH
Confidence 8 22 23355666666665554
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=297.93 Aligned_cols=360 Identities=19% Similarity=0.252 Sum_probs=287.3
Q ss_pred eecccccHHHHHHHHHhhhc-----chHH-HHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHH
Q 037612 94 TIIPAAAFRKMSSQLENSIG-----DVSW-LLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDA 167 (663)
Q Consensus 94 ~i~~~~~l~~l~~~L~~~~~-----~~~~-ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~A 167 (663)
.|+..|.+|+|+..|..... ...| |-+++........ .+...+.+.. |+.+|++ ++.+.|+.|
T Consensus 114 ~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~------~vv~~Gaip~----Lv~LL~s-~~~~v~e~A 182 (529)
T 3tpo_A 114 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK------AVVDGGAIPA----FISLLAS-PHAHISEQA 182 (529)
T ss_dssp HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH------HHHHTTHHHH----HHHHTTC-SCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH------HHHHCCCHHH----HHHHHcC-CCHHHHHHH
Confidence 34588999999999964321 1334 4455543211100 0112222222 3789999 999999999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-----hHHHHHHHHHHHHhcCCCcc-hHHHHHcCchHHHHHhhcc
Q 037612 168 AASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK-----PEGQENAARAIGLLGRDPES-VEHMIHSGVCLVFAKILKE 241 (663)
Q Consensus 168 A~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~-----~~~q~~Aa~AL~nLs~~~~~-~~~iv~aGaIp~Lv~lL~s 241 (663)
+++|++|+.+++.+|..|++.|++++|+.+|...+ ...+++++|+|.|++.+... .......|++|.|+++|.+
T Consensus 183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~ 262 (529)
T 3tpo_A 183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH 262 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC
Confidence 99999999998999999999999999999998654 34688999999999986544 3444557899999999999
Q ss_pred CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCC
Q 037612 242 GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNN 321 (663)
Q Consensus 242 ~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~ 321 (663)
++++++..++|+|++|+.++++....+.+.|++|.||.+|.++.
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~------------------------------------ 306 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE------------------------------------ 306 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC------------------------------------
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC------------------------------------
Confidence 99999999999999999888888899999999999999996431
Q ss_pred ccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccccccccccccc
Q 037612 322 KVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNY 401 (663)
Q Consensus 322 ~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (663)
T Consensus 307 -------------------------------------------------------------------------------- 306 (529)
T 3tpo_A 307 -------------------------------------------------------------------------------- 306 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHH
Q 037612 402 GANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAE 481 (663)
Q Consensus 402 g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~ 481 (663)
..++..|+++|++++.+++.++..+.+.|++++|+.||+++++++|++|+|+|++|+++.. +
T Consensus 307 ---------------~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~---~ 368 (529)
T 3tpo_A 307 ---------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ---D 368 (529)
T ss_dssp ---------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH---H
T ss_pred ---------------hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH---H
Confidence 1246778999999999999999999999999999999999999999999999999987644 3
Q ss_pred HHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchh------hHhhccHHHHHHhcccCCHHHHHHHHH
Q 037612 482 LRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK------ATETRMIVPLVKLLDEREAEVSREASI 555 (663)
Q Consensus 482 ~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~------~~e~~~I~pLV~LL~~~~~~v~~eAa~ 555 (663)
.+...+ ..++++.|+.++.+++.+++..|+.+|+|++.... -.+.|+|+||++||+..++++...+.+
T Consensus 369 ~~~~v~------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~ 442 (529)
T 3tpo_A 369 QIQQVV------NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD 442 (529)
T ss_dssp HHHHHH------HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHH------hcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHH
Confidence 333211 14688999999999999999999999999986422 135789999999999999999999999
Q ss_pred HHHhcccCCCCC-Chhh-HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 037612 556 ALTKFACSDNYL-HSDH-SKAIISAGGAKHLVQLVYFGEQIVQLSALVLLC 604 (663)
Q Consensus 556 AL~~la~~~~~~-~~~~-~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 604 (663)
||.|+..-+... +.+. +..|.+.||+..|-.|..+.++.+...|...|-
T Consensus 443 aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 443 AISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999986321111 1222 345889999999999999888878888888884
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=301.14 Aligned_cols=303 Identities=16% Similarity=0.153 Sum_probs=248.0
Q ss_pred HhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcC-Chh
Q 037612 186 IEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN-YPK 263 (663)
Q Consensus 186 ve~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~-~~~ 263 (663)
.+.+.||+||++|+++++..|++|+++|.+|+. +++++..|++.|+||+||++|+++++++|+.|+|+|.||+.+ +++
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 357899999999999999999999999999995 789999999999999999999999999999999999999974 589
Q ss_pred HHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCC
Q 037612 264 CQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKT 343 (663)
Q Consensus 264 ~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~ 343 (663)
++..|++.|+||+||.+|+++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~---------------------------------------------------------- 146 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKAR---------------------------------------------------------- 146 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHcCCC----------------------------------------------------------
Confidence 9999999999999999997531
Q ss_pred CccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHH
Q 037612 344 PSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMA 423 (663)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~A 423 (663)
+ ..+++.|
T Consensus 147 --------------------------------------------------------------------~----~~~~e~a 154 (584)
T 3l6x_A 147 --------------------------------------------------------------------D----MDLTEVI 154 (584)
T ss_dssp --------------------------------------------------------------------S----HHHHHHH
T ss_pred --------------------------------------------------------------------C----HHHHHHH
Confidence 0 1247789
Q ss_pred HHHHHHHhcCChhhhHHHhhhccHHHHHHHhh------------------cCChhHHHHHHHHHHHHhhhhhccHHHHhh
Q 037612 424 ARALWHLAKGNSPICRSITESRALLCFAVLLE------------------KGPEDVQYNSAMALMEITAVAEKDAELRRS 485 (663)
Q Consensus 424 a~AL~~La~gn~~~~~~I~esgal~~L~~LL~------------------~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~ 485 (663)
+.|||+|+. ++.+...|.+ +++++|++||. ..+++++++|+++|.|++...+ +.|+.
T Consensus 155 a~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~---~~R~~ 229 (584)
T 3l6x_A 155 TGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS---EARRK 229 (584)
T ss_dssp HHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCH---HHHHH
T ss_pred HHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCH---HHHHH
Confidence 999999997 7889888885 68999999882 2257999999999999986433 34443
Q ss_pred hcCCCCchhHhHHHHHHHHhhh------cCcchhhHHHHHHHHhhhchhh------------------------------
Q 037612 486 AFKPNAPACKAVVDQLFRIIEK------ADSDLLIPCIKAVGNLARTFKA------------------------------ 529 (663)
Q Consensus 486 a~~~~~~a~~~vv~qL~~ll~~------~~~~l~~~a~~aLg~La~~~~~------------------------------ 529 (663)
+.. +.++++.|+.++++ .+...+..|+.+|.||+.....
T Consensus 230 i~~-----~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L 304 (584)
T 3l6x_A 230 LRE-----CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELL 304 (584)
T ss_dssp HHH-----STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGG
T ss_pred HHH-----cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHH
Confidence 211 25678899999986 3467889999999999865210
Q ss_pred HhhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhh-HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 530 TETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDH-SKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 530 ~e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~-~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
.+.++|++|+.+|. ..++++++.|++||.|++.+... .... ...|.+.||+++|+.||.++++.++..|+++|.||+
T Consensus 305 ~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~-~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs 383 (584)
T 3l6x_A 305 FQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT-YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383 (584)
T ss_dssp GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH-HHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc-ccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 01245889999995 56899999999999999765421 1122 234566899999999999999989999999999999
Q ss_pred cCCCChHHHHhccchhhhhhccc
Q 037612 608 LHVPDSEDLAQAEVLTVLEWTSK 630 (663)
Q Consensus 608 ~~~~~~~~i~~~~vl~~L~~~~~ 630 (663)
.+..+...| ..|++|.|..-..
T Consensus 384 ~~~~~~~~I-~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 384 VDARNKELI-GKHAIPNLVKNLP 405 (584)
T ss_dssp TTCSCHHHH-HHHHHHHHHHTSS
T ss_pred CChhHHHHH-HhCCHHHHHHHhc
Confidence 988877766 6789999985333
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-31 Score=296.46 Aligned_cols=381 Identities=19% Similarity=0.226 Sum_probs=295.6
Q ss_pred HHHHHHHHHHHHhhhcCcccccceecccccHHHHHHHHHhhh-cc----hHH-HHhhccccC-CCC--ccccCCCCcccc
Q 037612 71 QVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSI-GD----VSW-LLRVSASAE-DRD--DEYLGLPPIAAN 141 (663)
Q Consensus 71 ~tl~~a~~l~~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~~~-~~----~~~-ll~~s~~~~-~~~--~~~~~~p~ia~~ 141 (663)
+..-+|..-+|++-.....--.=.|+..|.+|+|+.+|.... .+ ..| |-|++.... +.. ...+++|+
T Consensus 72 ~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~---- 147 (510)
T 3ul1_B 72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA---- 147 (510)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH----
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH----
Confidence 334456666776632111111113568899999999996432 11 333 445543221 111 11222333
Q ss_pred hhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-----hHHHHHHHHHHHHh
Q 037612 142 EPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK-----PEGQENAARAIGLL 216 (663)
Q Consensus 142 ~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~-----~~~q~~Aa~AL~nL 216 (663)
|+.+|++ ++.+.|++|+++|++|+.+++.+|..+++.|++++|+.+|.+.+ ...+++++|+|.|+
T Consensus 148 ---------Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 148 ---------FISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp ---------HHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 3889999 99999999999999999998999999999999999999998754 34688999999999
Q ss_pred cCCCcch-HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHh
Q 037612 217 GRDPESV-EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIV 295 (663)
Q Consensus 217 s~~~~~~-~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~ 295 (663)
+.+.... ......|++|.|+++|.+++++++..++|+|++|+.++++....+.+.|++|.|+.+|.++.
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---------- 287 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---------- 287 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC----------
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC----------
Confidence 9865443 34445789999999999999999999999999999888888889999999999999996431
Q ss_pred hhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCc
Q 037612 296 SKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGT 375 (663)
Q Consensus 296 ~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~ 375 (663)
T Consensus 288 -------------------------------------------------------------------------------- 287 (510)
T 3ul1_B 288 -------------------------------------------------------------------------------- 287 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh
Q 037612 376 DVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE 455 (663)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~ 455 (663)
..++..|+++|++++.+++.++..+.+.|++++|+.||+
T Consensus 288 -----------------------------------------~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~ 326 (510)
T 3ul1_B 288 -----------------------------------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326 (510)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT
T ss_pred -----------------------------------------hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc
Confidence 124677899999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh------
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA------ 529 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~------ 529 (663)
++++++|++|+|+|++|+++.. +.++..+ ..++++.|++++.+++.+++..|+.+|+|++.....
T Consensus 327 ~~~~~v~~~A~~aL~nl~a~~~---~~~~~v~------~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 327 NPKTNIQKEATWTMSNITAGRQ---DQIQQVV------NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCH---HHHHHHH------HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCcH---HHHHHHH------hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999986643 3333221 146889999999999999999999999999874322
Q ss_pred HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCC-Chh-hHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHH
Q 037612 530 TETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYL-HSD-HSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCY 605 (663)
Q Consensus 530 ~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~-~~~-~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ 605 (663)
.+.++|+||+++|+..++++...+.++|.|+...+... +.+ -+..|.+.||++.|-.|..+.++.+...|...|-.
T Consensus 398 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999986321111 112 23458899999999999888888788888888843
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-30 Score=279.76 Aligned_cols=401 Identities=17% Similarity=0.192 Sum_probs=307.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhc-CChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcch
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLAR-DNDRYGKLIIEE-GGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESV 223 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~-G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~ 223 (663)
+..++..|++ ++.+.|..|+..|..+.. ..+...+.+++. |++|.|+++|+++ ++..|..|+++|.+++. ++++.
T Consensus 22 l~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHS-SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3445888899 999999999999999764 222334556777 9999999999998 79999999999999997 46788
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHA 303 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~ 303 (663)
..+++.|++|.|+++|+++++++++.|+|+|++|+.++++.+..+.+.|++++|+.+|.+.....-... ++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~-------a~~~ 173 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN-------AVWA 173 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHH-------HHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHH-------HHHH
Confidence 889999999999999999999999999999999999888999999999999999999985321111111 1111
Q ss_pred HHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCC
Q 037612 304 VVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQD 383 (663)
Q Consensus 304 lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~ 383 (663)
+........ +.. . ...+ .++.
T Consensus 174 L~~l~~~~~------~~~-------------------~------~~~~---------------------------~~~l- 194 (450)
T 2jdq_A 174 LSNLCRGKS------PPP-------------------E------FAKV---------------------------SPCL- 194 (450)
T ss_dssp HHHHHCCSS------SCC-------------------C------GGGT---------------------------GGGH-
T ss_pred HHHHhCCCC------CCC-------------------C------HHHH---------------------------HHHH-
Confidence 111111000 000 0 0000 0000
Q ss_pred ccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH
Q 037612 384 NNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY 463 (663)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~ 463 (663)
+ .+...+. .+|+ .++..|+++|.+|+.+...+...+.+.|+++.|+.+|.+.+++++.
T Consensus 195 ~--------~L~~~l~----------~~~~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 252 (450)
T 2jdq_A 195 N--------VLSWLLF----------VSDT----DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252 (450)
T ss_dssp H--------HHHHHTT----------CCCH----HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHH
T ss_pred H--------HHHHHHc----------cCCH----HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHH
Confidence 0 0111111 1344 4588999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----HhhccHHHH
Q 037612 464 NSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRMIVPL 538 (663)
Q Consensus 464 ~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pL 538 (663)
.++++|.+|+... ++.++..+. .++++.|++++.+.++.++..++.+|++|+..... .+.+++|+|
T Consensus 253 ~a~~~L~~l~~~~---~~~~~~~~~------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 323 (450)
T 2jdq_A 253 PALRAVGNIVTGD---DIQTQVILN------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323 (450)
T ss_dssp HHHHHHHHHTTSC---HHHHHHHHT------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhhCC---hHHHHHHHH------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 9999999997543 333332222 25889999999998899999999999999964322 235899999
Q ss_pred HHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC------
Q 037612 539 VKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD------ 612 (663)
Q Consensus 539 V~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~------ 612 (663)
+++|.+.+++++++|+|+|++++.+.+ +++.+.+++.|++++|+++|..+++.++..|+.+|.+++...+.
T Consensus 324 ~~~l~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 400 (450)
T 2jdq_A 324 ISILQTAEFRTRKEAAWAITNATSGGS---AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG 400 (450)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence 999999999999999999999986542 57788899999999999999999988999999999999754432
Q ss_pred ------hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 613 ------SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 613 ------~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
...+.+.|+++.|+ . ++++....++..|...++.|+.
T Consensus 401 ~~~~~~~~~l~~~g~~~~l~------~-l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 401 TGINPYCALIEEAYGLDKIE------F-LQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp SCCCHHHHHHHHHHCHHHHH------H-HHCHHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHcCcHHHHH------H-HHcCCCHHHHHHHHHHHHHHCC
Confidence 24566777777776 2 3445677899999999999986
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=284.30 Aligned_cols=331 Identities=15% Similarity=0.155 Sum_probs=283.5
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
-.++.+|+. ++.+.|..|+..|.+|+.+ +.++..+++. |+|++|+++|+++ ++..++.|+.+|.+|+.+++++..+
T Consensus 20 ~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 20 PELTKLLND-EDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHTC-SCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 334788999 9999999999999999976 5677777754 8999999999876 7899999999999999998999999
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
++.|+||+|+++|++++++++..|+++|.+|+.++++.+..+.+.|+||+|+.+|++++
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------------------- 156 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--------------------- 156 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC---------------------
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC---------------------
Confidence 99999999999999999999999999999999877788999999999999999996431
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
T Consensus 157 -------------------------------------------------------------------------------- 156 (529)
T 1jdh_A 157 -------------------------------------------------------------------------------- 156 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCCh-hHHHHH
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPE-DVQYNS 465 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~-~vq~~a 465 (663)
.+.+..++.+|++++.+++.++..+.+.|+++.|+.+|++++. ..+..+
T Consensus 157 ------------------------------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a 206 (529)
T 1jdh_A 157 ------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206 (529)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHH
Confidence 0135667889999999999999999999999999999998765 566778
Q ss_pred HHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--hccHHHHHHhcc
Q 037612 466 AMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--TRMIVPLVKLLD 543 (663)
Q Consensus 466 a~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~~~I~pLV~LL~ 543 (663)
+.+|++++...+....+.+ .++++.|++++.+.+++++..++.+|++|++.....+ .++||+|+++|.
T Consensus 207 ~~~L~~l~~~~~~~~~~~~----------~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~ 276 (529)
T 1jdh_A 207 SRVLKVLSVCSSNKPAIVE----------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG 276 (529)
T ss_dssp HHHHHHHTTSTTHHHHHHH----------TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT
T ss_pred HHHHHHHhcCcccHHHHHH----------CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHc
Confidence 8999999854432222222 3588999999999889999999999999998754432 468999999999
Q ss_pred cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-C-hhHHHHHHHHHHHHhcCCCCh----HHHH
Q 037612 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-E-QIVQLSALVLLCYIALHVPDS----EDLA 617 (663)
Q Consensus 544 ~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~-~~~q~~Al~~L~~la~~~~~~----~~i~ 617 (663)
+.+++++..|+|+|++++.++ .++...+.+.||+++|+++|... + +.++..|+.+|+|++.+.++. ..+.
T Consensus 277 ~~~~~v~~~a~~~L~~L~~~~----~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~ 352 (529)
T 1jdh_A 277 SDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 999999999999999998653 57788999999999999999863 2 568899999999998876663 4788
Q ss_pred hccchhhhh
Q 037612 618 QAEVLTVLE 626 (663)
Q Consensus 618 ~~~vl~~L~ 626 (663)
+.|+++.|.
T Consensus 353 ~~~~i~~L~ 361 (529)
T 1jdh_A 353 LHYGLPVVV 361 (529)
T ss_dssp HTTCHHHHH
T ss_pred HcCChhHHH
Confidence 899999987
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=289.30 Aligned_cols=463 Identities=16% Similarity=0.119 Sum_probs=309.2
Q ss_pred ccccHHHHHHHHHhhhc-----chHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCC-CHHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSIG-----DVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAG-SLEHKSDAAAS 170 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~~-----~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G-~~e~k~~AA~~ 170 (663)
..+.++.|+.+|..... .+..|.+++....++. .+.... ..+..++..|+. + +.+.+..|+.+
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~-------~i~~~~---~~i~~Lv~~L~~-~~~~~~~~~A~~~ 80 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-------AIMRSP---QMVSAIVRTMQN-TNDVETARCTAGT 80 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHH-------HHTTCH---HHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHH-------HHHhcc---ChHHHHHHHHhc-CCCHHHHHHHHHH
Confidence 67889999999964221 2445555554322110 011111 123445788887 7 89999999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHHHHHhhccCChhHHHH
Q 037612 171 LVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAV 249 (663)
Q Consensus 171 L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~ 249 (663)
|.+|+.. +.++..|++.|+||+|+++|+++++.+|+.|+++|.||+.+ +..+..+++.|+||.|+++|++++++++..
T Consensus 81 L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~ 159 (644)
T 2z6h_A 81 LHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159 (644)
T ss_dssp HHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHH
Confidence 9999986 56999999999999999999999999999999999999965 677888889999999999999999888888
Q ss_pred HHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhh
Q 037612 250 VAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDK 329 (663)
Q Consensus 250 Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~ 329 (663)
++.+|.+|+..+++.+..+.+.|+|+.|+.+|++++. +...+. ....+...... +.+...+...+
T Consensus 160 a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~------a~~~L~nLs~~-------~~~~~~l~~~g- 224 (644)
T 2z6h_A 160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWT------TSRVLKVLSVC-------SSNKPAIVEAG- 224 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHH------HHHHHHHHTTC-------TTHHHHHHHTT-
T ss_pred HHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh-HHHHHH------HHHHHHHHhcC-------cccHHHHHHCC-
Confidence 8999999997778999999999999999999987742 111111 11111111000 00000000000
Q ss_pred hcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCc
Q 037612 330 QYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRE 409 (663)
Q Consensus 330 ~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re 409 (663)
.. +.+..-+.. ....+...+++... ++...... ..+....+. .+.. ...
T Consensus 225 ~l-~~L~~ll~~----~~~~~~~~a~~~L~---------nL~~~~~~--~~~~~~~i~-----~Lv~----------lL~ 273 (644)
T 2z6h_A 225 GM-QALGLHLTD----PSQRLVQNCLWTLR---------NLSDAATK--QEGMEGLLG-----TLVQ----------LLG 273 (644)
T ss_dssp HH-HHHHTTTTC----SCHHHHHHHHHHHH---------HHGGGCTT--CCSCHHHHH-----HHHH----------HTT
T ss_pred CH-HHHHHHHhc----CCHHHHHHHHHHHH---------HHhhcchh--hhhhhhHHH-----HHHH----------HHc
Confidence 00 000000000 11223333333321 01000000 000000000 0110 111
Q ss_pred cCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-C-hhHHHHHHHHHHHHhhhhhccHHHHhhhc
Q 037612 410 LEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG-P-EDVQYNSAMALMEITAVAEKDAELRRSAF 487 (663)
Q Consensus 410 ~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~-~-~~vq~~aa~AL~~i~a~a~~~~~~rr~a~ 487 (663)
.+|+ +++..|+++|++|+.++..++..+.+.|+++.|+.+|.+. + ++++..|+++|.+|+.....+...|...+
T Consensus 274 ~~d~----~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~ 349 (644)
T 2z6h_A 274 SDDI----NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 349 (644)
T ss_dssp CSCH----HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred CCCH----HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 2354 4589999999999999999999999999999999999873 3 79999999999999754332222332211
Q ss_pred CCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHHHh--c
Q 037612 488 KPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKAT----ETRMIVPLVKLLDEREAEVSREASIALTK--F 560 (663)
Q Consensus 488 ~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~--l 560 (663)
. .++++.|++++.+.+ +.++..++.+|+||+...... +.++||+|+++|.+.+++++++|+|+++| +
T Consensus 350 ~------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~ 423 (644)
T 2z6h_A 350 L------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423 (644)
T ss_dssp H------TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------
T ss_pred H------ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchh
Confidence 1 347899999999876 589999999999999764442 46899999999988777777666666655 3
Q ss_pred ccCCCC---------------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhh
Q 037612 561 ACSDNY---------------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625 (663)
Q Consensus 561 a~~~~~---------------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L 625 (663)
+.+.+. .+.++...+.+.|++++|++||.++++.+|..|+.+|++++.+.+....|.+.|+++.|
T Consensus 424 ~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L 503 (644)
T 2z6h_A 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 503 (644)
T ss_dssp CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHH
Confidence 322110 01244457889999999999999999989999999999998765567778999999998
Q ss_pred hh
Q 037612 626 EW 627 (663)
Q Consensus 626 ~~ 627 (663)
..
T Consensus 504 ~~ 505 (644)
T 2z6h_A 504 TE 505 (644)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=289.18 Aligned_cols=479 Identities=15% Similarity=0.115 Sum_probs=320.4
Q ss_pred ccccHHHHHHHHHhhhc-----chHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCC-CHHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSIG-----DVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAG-SLEHKSDAAAS 170 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~~-----~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G-~~e~k~~AA~~ 170 (663)
..+.++.|+.+|..... .+..|.+++....++. .+.... ..+..++..|+. + +.+.|.+|+.+
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~-------~i~~~~---~~i~~Lv~~L~~-~~d~~vr~~Aa~a 216 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-------AIMRSP---QMVSAIVRTMQN-TNDVETARCTSGT 216 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH-------HHTTCH---HHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH-------HHHhcc---ChHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 47899999999964221 2455555554332110 011111 123445778887 7 89999999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHHHHHhhccCChhHHHH
Q 037612 171 LVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAV 249 (663)
Q Consensus 171 L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~ 249 (663)
|.+|+.. +.++..|++.|+||+|+++|+++++.+|+.|+++|.||+.+ +.++..+++.|+||.|+++|++++.+++..
T Consensus 217 L~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~ 295 (780)
T 2z6g_A 217 LHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 295 (780)
T ss_dssp HHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 9999876 67799999999999999999999999999999999999975 677778889999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhh
Q 037612 250 VAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDK 329 (663)
Q Consensus 250 Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~ 329 (663)
++.+|.+|+..+++.+..+.+.|+++.|+.+|+.++.......+. ..+..+. .. . .+...+.
T Consensus 296 a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~----~aL~~Ls---~~-~------~~~~~i~---- 357 (780)
T 2z6g_A 296 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS----RVLKVLS---VC-S------SNKPAIV---- 357 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHH----HHHHHHH---TS-T------THHHHHH----
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH----HHHHHhh---cC-h------HHHHHHH----
Confidence 999999999878899999999999999999999775311110000 0111110 00 0 0000000
Q ss_pred hcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCc
Q 037612 330 QYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRE 409 (663)
Q Consensus 330 ~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re 409 (663)
....+. ++..-.......++..+.+... ++...... ..+.. .+. + .+... ..
T Consensus 358 -~~g~l~-~Ll~lL~~~~~~~~~~a~~~L~---------~L~~~~~~--~~~~~-~~i-~---~Lv~l----------L~ 409 (780)
T 2z6g_A 358 -EAGGMQ-ALGLHLTDPSQRLVQNCLWTLR---------NLSDAATK--QEGME-GLL-G---TLVQL----------LG 409 (780)
T ss_dssp -HTTHHH-HHGGGTTCSCHHHHHHHHHHHH---------HHHTTCTT--CSCCH-HHH-H---HHHHH----------TT
T ss_pred -HhchHH-HHHHHHcCCchHHHHHHHHHHH---------HHhccchh--hhhhh-hHH-H---HHHHH----------Hc
Confidence 000000 0000000011223333333221 01000000 00000 000 0 01111 11
Q ss_pred cCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc-CC-hhHHHHHHHHHHHHhhhhhccHHHHhhhc
Q 037612 410 LEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-GP-EDVQYNSAMALMEITAVAEKDAELRRSAF 487 (663)
Q Consensus 410 ~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-~~-~~vq~~aa~AL~~i~a~a~~~~~~rr~a~ 487 (663)
.+|+. ++..|+++|++|+.++..++..+.+.|+++.|+.+|.. ++ ++++..|+++|.+|+....++...|....
T Consensus 410 ~~d~~----vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~ 485 (780)
T 2z6g_A 410 SDDIN----VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR 485 (780)
T ss_dssp CSCHH----HHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHH
T ss_pred CCCHH----HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 24554 58999999999999999999999999999999999986 33 49999999999999754332222232211
Q ss_pred CCCCchhHhHHHHHHHHhhhcCc-chhhHHHHHHHHhhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHH-----
Q 037612 488 KPNAPACKAVVDQLFRIIEKADS-DLLIPCIKAVGNLARTFKAT----ETRMIVPLVKLLDEREAEVSREASIAL----- 557 (663)
Q Consensus 488 ~~~~~a~~~vv~qL~~ll~~~~~-~l~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL----- 557 (663)
..++++.|++++.+.++ .++..|+.+|+||+...... +.++||+|+++|.+.+++++++|+|++
T Consensus 486 ------~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~ 559 (780)
T 2z6g_A 486 ------LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559 (780)
T ss_dssp ------HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CC
T ss_pred ------HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchh
Confidence 13468899999998875 89999999999999765543 468899999999887766665555554
Q ss_pred -----------------HhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhcc
Q 037612 558 -----------------TKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAE 620 (663)
Q Consensus 558 -----------------~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~ 620 (663)
.+++.+ +++...|.+.|++++|+.||+++++.++..|+.+|++++.+.+..+.|.+.|
T Consensus 560 ~~~~~~~~v~~~a~~aL~~La~~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g 634 (780)
T 2z6g_A 560 VEGVRMEEIVEACTGALHILARD-----IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG 634 (780)
T ss_dssp STTCCHHHHHHHHHHHHHHHTTS-----HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred hcccChHHHHHHHHHHHHHHhcC-----hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCC
Confidence 455422 3455678899999999999999999899999999999987766677899999
Q ss_pred chhhhhhccccccccccCCcHHHHHHHHHHHH
Q 037612 621 VLTVLEWTSKQSHMTQDETVDPLLQDAKSRLE 652 (663)
Q Consensus 621 vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le 652 (663)
+++.|...... .++.++..+..|+.++.
T Consensus 635 ~i~~L~~Ll~~----~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 635 ATAPLTELLHS----RNEGVATYAAAVLFRMS 662 (780)
T ss_dssp CHHHHHHGGGC----SCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC----CCHHHHHHHHHHHHHHH
Confidence 99999732211 23344444455554443
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=283.41 Aligned_cols=330 Identities=15% Similarity=0.158 Sum_probs=283.3
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHH
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIH 228 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~ 228 (663)
++.+|+. ++...|..|+.+|.+|+.++ .++..+++. |+|++|+++|+++ ++..|+.|+.+|.+|+.+++++..+++
T Consensus 19 Lv~lL~~-~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~ 96 (644)
T 2z6h_A 19 LTKLLND-EDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK 96 (644)
T ss_dssp HHHHHTC-SCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 4788999 99999999999999999874 578777754 8999999999976 789999999999999999899999999
Q ss_pred cCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 229 SGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 229 aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
.|+||.|+++|+++++.++..|+++|.||+..+++.+..+.+.|+||+|+.+|++++
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~----------------------- 153 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----------------------- 153 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-----------------------
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-----------------------
Confidence 999999999999999999999999999999877788899999999999999996431
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
T Consensus 154 -------------------------------------------------------------------------------- 153 (644)
T 2z6h_A 154 -------------------------------------------------------------------------------- 153 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCC-hhHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP-EDVQYNSAM 467 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~-~~vq~~aa~ 467 (663)
.+++..++.+|++|+.+++.++..+.+.|+++.|+.+|++.+ ..++..++.
T Consensus 154 ----------------------------~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~ 205 (644)
T 2z6h_A 154 ----------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 205 (644)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHH
Confidence 023566788999999999999999999999999999999875 578899999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--hccHHHHHHhcccC
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--TRMIVPLVKLLDER 545 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~~~I~pLV~LL~~~ 545 (663)
+|++++...+....+.+ .++++.|++++.+.++.++..++.+|++|++.....+ .++||+|+++|.+.
T Consensus 206 ~L~nLs~~~~~~~~l~~----------~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~ 275 (644)
T 2z6h_A 206 VLKVLSVCSSNKPAIVE----------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD 275 (644)
T ss_dssp HHHHHTTCTTHHHHHHH----------TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCS
T ss_pred HHHHHhcCcccHHHHHH----------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCC
Confidence 99999854432222222 3578999999999889999999999999998654322 46899999999999
Q ss_pred CHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-C-hhHHHHHHHHHHHHhcCCCCh----HHHHhc
Q 037612 546 EAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-E-QIVQLSALVLLCYIALHVPDS----EDLAQA 619 (663)
Q Consensus 546 ~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~-~~~q~~Al~~L~~la~~~~~~----~~i~~~ 619 (663)
+++++..|+|+|++++.+. .++...+.+.||++.|+++|... + +.++..|+.+|+|++.+.++. ..+...
T Consensus 276 d~~v~~~a~~aL~~L~~~~----~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~ 351 (644)
T 2z6h_A 276 DINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 351 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCC----HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence 9999999999999998653 46788899999999999999874 3 568999999999998776653 347778
Q ss_pred cchhhhhh
Q 037612 620 EVLTVLEW 627 (663)
Q Consensus 620 ~vl~~L~~ 627 (663)
++++.|..
T Consensus 352 ~~l~~L~~ 359 (644)
T 2z6h_A 352 YGLPVVVK 359 (644)
T ss_dssp THHHHHHH
T ss_pred cChHHHHH
Confidence 99999873
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-28 Score=272.18 Aligned_cols=362 Identities=16% Similarity=0.180 Sum_probs=290.7
Q ss_pred ecccccHHHHHHHHHhhh-cc-----hHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHH
Q 037612 95 IIPAAAFRKMSSQLENSI-GD-----VSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAA 168 (663)
Q Consensus 95 i~~~~~l~~l~~~L~~~~-~~-----~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA 168 (663)
++..+.++.|+..|.... .+ +..|-+++........ .+...+. +-.++..|+. ++.+.|..|+
T Consensus 113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~------~~~~~g~----i~~L~~lL~~-~~~~v~~~a~ 181 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK------VVIDHGA----VPIFVKLLGS-SSDDVREQAV 181 (528)
T ss_dssp HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH------HHHHTTH----HHHHHHHTTC-SCHHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH------HHHhCCc----HHHHHHHhcC-CCHHHHHHHH
Confidence 346799999999996543 21 2333344432110000 0011122 2334788999 9999999999
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHhh-ccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHH
Q 037612 169 ASLVSLARDNDRYGKLIIEEGGVGPLLKLV-KEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQ 247 (663)
Q Consensus 169 ~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL-~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq 247 (663)
++|++|+.+++.++..+.+.|+||+|+.+| .+.++..++.|+|+|.+|+.+.......+..|++|.|+++|.+++++++
T Consensus 182 ~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 261 (528)
T 4b8j_A 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVL 261 (528)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999998888999999999999999999 4567999999999999999876666667779999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccch
Q 037612 248 AVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDE 327 (663)
Q Consensus 248 ~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~ 327 (663)
..++|+|++|+...++....+.+.|++|.|+.+|.++.
T Consensus 262 ~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~------------------------------------------ 299 (528)
T 4b8j_A 262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS------------------------------------------ 299 (528)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC------------------------------------------
Confidence 99999999999877777788889999999999996431
Q ss_pred hhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCC
Q 037612 328 DKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKG 407 (663)
Q Consensus 328 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (663)
T Consensus 300 -------------------------------------------------------------------------------- 299 (528)
T 4b8j_A 300 -------------------------------------------------------------------------------- 299 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-ChhHHHHHHHHHHHHhhhhhccHHHHhhh
Q 037612 408 RELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG-PEDVQYNSAMALMEITAVAEKDAELRRSA 486 (663)
Q Consensus 408 re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~-~~~vq~~aa~AL~~i~a~a~~~~~~rr~a 486 (663)
..++..|+++|++|+.+++..+..+.+.|+++.|+.+|.++ ++.++++|+|+|++|+.+ +.+..+..
T Consensus 300 ---------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~---~~~~~~~~ 367 (528)
T 4b8j_A 300 ---------PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG---NKDQIQAV 367 (528)
T ss_dssp ---------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS---CHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 02467789999999999999999999999999999999999 999999999999999864 33333322
Q ss_pred cCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhch--hh----HhhccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 487 FKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTF--KA----TETRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 487 ~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~--~~----~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
+. .++++.|++++.+++++++..++.+|++++... .. .+.++|++|+.+|.+.+++++..|.++|.++
T Consensus 368 ~~------~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 368 IN------AGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI 441 (528)
T ss_dssp HH------TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HH------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 21 357899999999999999999999999998762 11 2468999999999999999999999999999
Q ss_pred ccCCCC-------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 561 ACSDNY-------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 561 a~~~~~-------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
...+.. ........|.+.||+..|..|.+++++.++..|..+|..+.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 442 LKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 743210 00124667899999999999999998888888999887773
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-28 Score=269.28 Aligned_cols=363 Identities=18% Similarity=0.212 Sum_probs=291.3
Q ss_pred cccccHHHHHHHHHhh-hcc-----hHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHH
Q 037612 96 IPAAAFRKMSSQLENS-IGD-----VSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAA 169 (663)
Q Consensus 96 ~~~~~l~~l~~~L~~~-~~~-----~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~ 169 (663)
+..+.++.++..|... ..+ +..|-+++........ .+...+. +..++..|+. ++.+.|..|++
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~------~~~~~g~----i~~Lv~lL~~-~~~~vr~~A~~ 195 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK------VVVDADA----VPLFIQLLYT-GSVEVKEQAIW 195 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH------HHHHTTC----HHHHHHHHHH-CCHHHHHHHHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH------HHHHCCC----HHHHHHHHcC-CCHHHHHHHHH
Confidence 4678999999999654 221 2233333332110000 0001111 2334778899 99999999999
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cchHHHHHcCchHHHHHhhccCChhHHH
Q 037612 170 SLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ESVEHMIHSGVCLVFAKILKEGPMKVQA 248 (663)
Q Consensus 170 ~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~~~~iv~aGaIp~Lv~lL~s~~~~vq~ 248 (663)
+|++|+.+++.++..+++.|++|+|+.+|.+.++.++..|+|+|.+|+.+. .........|++|.|+++|.++++.++.
T Consensus 196 aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~ 275 (530)
T 1wa5_B 196 ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 275 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHH
T ss_pred HHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHH
Confidence 999999988889999999999999999999988999999999999999765 6666777899999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchh
Q 037612 249 VVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDED 328 (663)
Q Consensus 249 ~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~ 328 (663)
.++|+|.+|+...++....+.+.|++|.|+.+|.++.
T Consensus 276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~------------------------------------------- 312 (530)
T 1wa5_B 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES------------------------------------------- 312 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC-------------------------------------------
Confidence 9999999999877788888889999999999986321
Q ss_pred hhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCC
Q 037612 329 KQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGR 408 (663)
Q Consensus 329 ~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~r 408 (663)
T Consensus 313 -------------------------------------------------------------------------------- 312 (530)
T 1wa5_B 313 -------------------------------------------------------------------------------- 312 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcC
Q 037612 409 ELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFK 488 (663)
Q Consensus 409 e~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~ 488 (663)
+ .++..|+++|++|+.+++.....+.+.|+++.|+.+|.+++..++..|+|+|++|+.+. ++..+..+.
T Consensus 313 ----~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~---~~~~~~~~~ 381 (530)
T 1wa5_B 313 ----T----LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN---TEQIQAVID 381 (530)
T ss_dssp ----H----HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHH
T ss_pred ----h----hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 0 24667889999999999999999999999999999999999999999999999998643 343333221
Q ss_pred CCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh--------HhhccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 489 PNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA--------TETRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 489 ~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~--------~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
.++++.|+.++.+++++++..++.+|++++..... .+.++||+|+.+|.+.+++++..|.++|.++
T Consensus 382 ------~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 382 ------ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455 (530)
T ss_dssp ------TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999875321 2468999999999999999999999999999
Q ss_pred ccCCCC-------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 037612 561 ACSDNY-------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALH 609 (663)
Q Consensus 561 a~~~~~-------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~ 609 (663)
+..... .....+..|.+.||++.|..|+.++++.++..|..+|.++-..
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 456 LKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 743210 0113456799999999999999999998999999999887543
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=269.50 Aligned_cols=232 Identities=13% Similarity=0.144 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHhhccCChHHHHHHHHHHHHhcCC--CcchHHHHHcCchHHHH
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLKLVKEGKPEGQENAARAIGLLGRD--PESVEHMIHSGVCLVFA 236 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~~~~iv~aGaIp~Lv 236 (663)
+.+.|.+|+++|.+|+..++.++..|.+. |+||+||++|+++++.+|+.|+|+|.||+.. ++++..|+++|+||+||
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46789999999999999888788888655 4599999999999999999999999999974 57899999999999999
Q ss_pred Hhh-ccCChhHHHHHHHHHHHHhcCChhHHHHHH-hCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCcc
Q 037612 237 KIL-KEGPMKVQAVVAWAVSELAGNYPKCQDLFA-QHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNA 314 (663)
Q Consensus 237 ~lL-~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~-~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~ 314 (663)
++| +++++++++.|+++|.||+..+++.+..+. ..|+||+||.+|++++..
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~--------------------------- 229 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT--------------------------- 229 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS---------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc---------------------------
Confidence 975 678899999999999999986677787777 799999999999754200
Q ss_pred ccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccc
Q 037612 315 NANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQH 394 (663)
Q Consensus 315 ~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~ 394 (663)
T Consensus 230 -------------------------------------------------------------------------------- 229 (354)
T 3nmw_A 230 -------------------------------------------------------------------------------- 229 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhc---CChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHH
Q 037612 395 QHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAK---GNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALME 471 (663)
Q Consensus 395 ~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~---gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~ 471 (663)
.+ .+++..|+.+|++|+. +++.+...+.+.|++++|+.+|++++.++|++|+|||++
T Consensus 230 ----------------~~----~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 289 (354)
T 3nmw_A 230 ----------------NT----LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289 (354)
T ss_dssp ----------------SC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------------cc----HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 00 0247789999999997 899999999999999999999999999999999999999
Q ss_pred HhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHH
Q 037612 472 ITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSR 551 (663)
Q Consensus 472 i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~ 551 (663)
|+.. +++.++. ++ +.|+||||++||+++++.+++
T Consensus 290 La~~---~~~~~~~------------------i~-------------------------~~G~i~~Lv~LL~s~~~~i~~ 323 (354)
T 3nmw_A 290 LSAR---NPKDQEA------------------LW-------------------------DMGAVSMLKNLIHSKHKMIAM 323 (354)
T ss_dssp HTSS---CHHHHHH------------------HH-------------------------HTTHHHHHHTTTTCSSHHHHH
T ss_pred HhCC---CHHHHHH------------------HH-------------------------HCCCHHHHHHHHhCCCHHHHH
Confidence 9743 2333321 11 358999999999999999999
Q ss_pred HHHHHHHhcccCC
Q 037612 552 EASIALTKFACSD 564 (663)
Q Consensus 552 eAa~AL~~la~~~ 564 (663)
+|++||.|++.+.
T Consensus 324 ~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 324 GSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998653
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=258.66 Aligned_cols=317 Identities=19% Similarity=0.148 Sum_probs=267.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CChHHHHHHHHHHHHhcCC--CcchHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE-GKPEGQENAARAIGLLGRD--PESVEH 225 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s-g~~~~q~~Aa~AL~nLs~~--~~~~~~ 225 (663)
..++..|+. ++.+.|..|+++|++++.+++.++..+++.|++|+|+++|++ .+...++.|+++|++|+.+ +..+..
T Consensus 110 ~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 188 (450)
T 2jdq_A 110 PIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFA 188 (450)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGG
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 345788999 999999999999999999888899999999999999999996 5799999999999999965 344444
Q ss_pred HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
++ .|++|.|+++|+++++.++..++|+|.+|+.+.++.+..+.+.|++|+|+.+|.++.
T Consensus 189 ~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------------------- 247 (450)
T 2jdq_A 189 KV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-------------------- 247 (450)
T ss_dssp GT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC--------------------
T ss_pred HH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc--------------------
Confidence 44 899999999999999999999999999999877788888889999999999885321
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
T Consensus 248 -------------------------------------------------------------------------------- 247 (450)
T 2jdq_A 248 -------------------------------------------------------------------------------- 247 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHH
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNS 465 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~a 465 (663)
+ .++..|+++|++++.+++..+..+.+.|+++.|+.+|+++++.++..|
T Consensus 248 ---------------------------~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a 296 (450)
T 2jdq_A 248 ---------------------------Y----KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296 (450)
T ss_dssp ---------------------------H----HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHH
T ss_pred ---------------------------h----hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHH
Confidence 1 246778899999999999888889999999999999999999999999
Q ss_pred HHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchh--h----HhhccHHHHH
Q 037612 466 AMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK--A----TETRMIVPLV 539 (663)
Q Consensus 466 a~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~--~----~e~~~I~pLV 539 (663)
+|+|++|+.+. ++..+..+. .++++.|++++.+++++++..++.+|++++.... . .+.+++|+|+
T Consensus 297 ~~~L~~l~~~~---~~~~~~~~~------~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~ 367 (450)
T 2jdq_A 297 CWTISNITAGN---RAQIQTVID------ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLC 367 (450)
T ss_dssp HHHHHHHTTSC---HHHHHHHHH------TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHcCC---HHHHHHHHH------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH
Confidence 99999998643 333332221 3578999999999999999999999999987521 1 2458999999
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCC-------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNY-------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~-------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
++|++.++++++.|++||.+++..+.. .-......+.+.||++.|..|+++++..++..|+.+|.++-
T Consensus 368 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 368 DLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999843210 00123567889999999999999888878888999998874
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=281.52 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=284.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEH 225 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~ 225 (663)
+-.++..|+. ++...|.+|+.+|++|+.. +.++..+++. |+|++|+++|+++ ++..+++|+++|.+|+.+++++..
T Consensus 152 ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~ 229 (780)
T 2z6g_A 152 IPELTKLLND-EDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229 (780)
T ss_dssp HHHHHHHHHC-SCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 3445778888 9999999999999999976 5677888754 8999999999876 799999999999999999999999
Q ss_pred HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
|++.|+||.|+++|+++++.++..|+++|.||+...++.+..+.+.|+|++|+.+|.++.
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~-------------------- 289 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------- 289 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------------------
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC--------------------
Confidence 999999999999999999999999999999999877889999999999999999996431
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
T Consensus 290 -------------------------------------------------------------------------------- 289 (780)
T 2z6g_A 290 -------------------------------------------------------------------------------- 289 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCCh-hHHHH
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPE-DVQYN 464 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~-~vq~~ 464 (663)
.+++..|+.+|++|+.++..++..+.+.|+++.|+.+|++++. ..+..
T Consensus 290 -------------------------------~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~ 338 (780)
T 2z6g_A 290 -------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 338 (780)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 0135567789999999999999999999999999999998765 56678
Q ss_pred HHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH--hhccHHHHHHhc
Q 037612 465 SAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT--ETRMIVPLVKLL 542 (663)
Q Consensus 465 aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~--e~~~I~pLV~LL 542 (663)
++.+|++++...+....+.+ .++++.|+.++.+.++.++..|+.+|.+|+...... ..++||+|+++|
T Consensus 339 a~~aL~~Ls~~~~~~~~i~~----------~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL 408 (780)
T 2z6g_A 339 TSRVLKVLSVCSSNKPAIVE----------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 408 (780)
T ss_dssp HHHHHHHHHTSTTHHHHHHH----------TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred HHHHHHHhhcChHHHHHHHH----------hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH
Confidence 89999999865433233222 468899999999988889999999999999765432 246899999999
Q ss_pred ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-CC-hhHHHHHHHHHHHHhcCCCCh----HHH
Q 037612 543 DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GE-QIVQLSALVLLCYIALHVPDS----EDL 616 (663)
Q Consensus 543 ~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~-~~~q~~Al~~L~~la~~~~~~----~~i 616 (663)
.+.+++++..|+++|++++.+. .++...+++.||+++|+++|.. ++ +.++..|+.+|++|+.+.++. ..+
T Consensus 409 ~~~d~~vr~~A~~aL~~L~~~~----~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v 484 (780)
T 2z6g_A 409 GSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHTSSC----HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCC----HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 9999999999999999998653 4678889999999999999986 33 258899999999998766663 467
Q ss_pred Hhccchhhhhh
Q 037612 617 AQAEVLTVLEW 627 (663)
Q Consensus 617 ~~~~vl~~L~~ 627 (663)
..+++++.|..
T Consensus 485 ~~~~~l~~L~~ 495 (780)
T 2z6g_A 485 RLHYGLPVVVK 495 (780)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCCHHHHHH
Confidence 88899999874
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-26 Score=225.28 Aligned_cols=243 Identities=27% Similarity=0.314 Sum_probs=215.0
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 189 GGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 189 G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
|+||.|+++|+++++..|..|+++|.+|+.+. +++..+++.|+++.|+++|++++++++..++++|.+|+.++++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999755 59999999999999999999999999999999999999877999999
Q ss_pred HHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccc
Q 037612 268 FAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQM 347 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~ 347 (663)
+.+.|++++|+.+|++++
T Consensus 82 ~~~~~~i~~l~~ll~~~~-------------------------------------------------------------- 99 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTD-------------------------------------------------------------- 99 (252)
T ss_dssp HHHTTHHHHHHHHTTCSS--------------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHcCCC--------------------------------------------------------------
Confidence 999999999999996431
Q ss_pred hhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHH
Q 037612 348 HNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARAL 427 (663)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL 427 (663)
+ .++..|+++|
T Consensus 100 -----------------------------------------------------------------~----~v~~~a~~~L 110 (252)
T 4hxt_A 100 -----------------------------------------------------------------S----EVQKEAARAL 110 (252)
T ss_dssp -----------------------------------------------------------------H----HHHHHHHHHH
T ss_pred -----------------------------------------------------------------H----HHHHHHHHHH
Confidence 1 2477899999
Q ss_pred HHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhh
Q 037612 428 WHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEK 507 (663)
Q Consensus 428 ~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~ 507 (663)
++|+.+++.++..+.+.|+++.|+.+|++++++++..++++|++|+...+ +.++ .++
T Consensus 111 ~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~------------------~~~-- 167 (252)
T 4hxt_A 111 ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---EAIK------------------AIV-- 167 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHH------------------HHH--
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHH------------------HHH--
Confidence 99999999999999999999999999999999999999999999975432 2211 011
Q ss_pred cCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHH
Q 037612 508 ADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587 (663)
Q Consensus 508 ~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~L 587 (663)
+.+++|+|+++|++.+++++..|+++|.+++... +++...+.+.|+++.|+++
T Consensus 168 -----------------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~l~~~~~i~~L~~l 220 (252)
T 4hxt_A 168 -----------------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASGP----TSAIKAIVDAGGVEVLQKL 220 (252)
T ss_dssp -----------------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB----HHHHHHHHHTTHHHHHHHG
T ss_pred -----------------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHH
Confidence 2478999999999999999999999999998642 5777889999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 588 VYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 588 L~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
+.++++.+|..|+++|++++.+.+.
T Consensus 221 l~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 221 LTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 9999998999999999999876654
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=223.44 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=212.0
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv 227 (663)
..++..|+. ++.+.|..|+++|.+++..++.++..+++.|+||+|+++|+++++..++.|+++|.||+.+ ++++..++
T Consensus 5 ~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 5 EKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 445889999 9999999999999999998888999999999999999999999999999999999999986 88999999
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
+.|+++.|+++|++++++++..++++|.+|+..+++.+..+.+.|+++.|+.+|++++
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---------------------- 141 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD---------------------- 141 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC----------------------
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC----------------------
Confidence 9999999999999999999999999999999778899999999999999999996431
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
T Consensus 142 -------------------------------------------------------------------------------- 141 (252)
T 4hxt_A 142 -------------------------------------------------------------------------------- 141 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
+ .++..|+++|++|+.+++.+...+.+.|+++.|+.+|++++++++..+++
T Consensus 142 -------------------------~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 192 (252)
T 4hxt_A 142 -------------------------S----EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 192 (252)
T ss_dssp -------------------------H----HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred -------------------------H----HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 1 24777899999999999999899999999999999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
+|++|+.. +++.++. ++ +.+++++|+++|++.++
T Consensus 193 ~L~~l~~~---~~~~~~~------------------l~-------------------------~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 193 ALANIASG---PTSAIKA------------------IV-------------------------DAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp HHHHHTTS---BHHHHHH------------------HH-------------------------HTTHHHHHHHGGGCSCH
T ss_pred HHHHHHcC---CHHHHHH------------------HH-------------------------HCCCHHHHHHHHCCCcH
Confidence 99999753 2232221 11 24789999999999999
Q ss_pred HHHHHHHHHHHhcccCC
Q 037612 548 EVSREASIALTKFACSD 564 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~ 564 (663)
+++++|+++|.|++...
T Consensus 227 ~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999998554
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=226.83 Aligned_cols=236 Identities=18% Similarity=0.247 Sum_probs=205.6
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv 227 (663)
.+++..|++ ++.+.+..|+++|.++...++.+++.+++.|+||+|+++|+++++..++.|+++|.||+. +++++..++
T Consensus 15 ~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 15 PQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345889999 999999999999988666567889999999999999999999999999999999999996 789999999
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
+.|++|.|+++|++++++++..|+|+|+||+.+++.....+.+.|+||.|+.+|+++.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---------------------- 151 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN---------------------- 151 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC----------------------
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC----------------------
Confidence 9999999999999999999999999999999865444488999999999999996431
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
T Consensus 152 -------------------------------------------------------------------------------- 151 (252)
T 4db8_A 152 -------------------------------------------------------------------------------- 151 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
+ .++..|+++|++|+.+++.+...+.+.|+++.|+.+|++++++++.++++
T Consensus 152 -------------------------~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 202 (252)
T 4db8_A 152 -------------------------E----QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 202 (252)
T ss_dssp -------------------------H----HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHH
T ss_pred -------------------------H----HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
Confidence 1 24778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
+|.+|+.. +++.++. ++ +.+++++|+++|.+.++
T Consensus 203 ~L~~l~~~---~~~~~~~------------------~~-------------------------~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 203 ALSNIASG---GNEQKQA------------------VK-------------------------EAGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHHHTTS---CHHHHHH------------------HH-------------------------HTTHHHHHHTTTTCSSS
T ss_pred HHHHHhcC---CHHHHHH------------------HH-------------------------HCCcHHHHHHHhCCCCH
Confidence 99999743 2232220 11 24789999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 037612 548 EVSREASIALTKFAC 562 (663)
Q Consensus 548 ~v~~eAa~AL~~la~ 562 (663)
+++++|+++|.|+++
T Consensus 237 ~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 237 KIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999973
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=221.15 Aligned_cols=241 Identities=20% Similarity=0.247 Sum_probs=208.8
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHH
Q 037612 188 EGGVGPLLKLVKEGKPEGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQD 266 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~ 266 (663)
....++++++|.++++..|..|+++|.++. .+++++..+++.|+||.|+++|++++++++..|+++|.+|+..+++.+.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 346999999999999999999999997755 5778899999999999999999999999999999999999987899999
Q ss_pred HHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCcc
Q 037612 267 LFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQ 346 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~ 346 (663)
.+.+.|++|+|+.+|++++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~------------------------------------------------------------- 109 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPN------------------------------------------------------------- 109 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSC-------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHcCCC-------------------------------------------------------------
Confidence 9999999999999996431
Q ss_pred chhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHH
Q 037612 347 MHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARA 426 (663)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~A 426 (663)
+ .++..|+++
T Consensus 110 ------------------------------------------------------------------~----~v~~~a~~~ 119 (252)
T 4db8_A 110 ------------------------------------------------------------------E----QILQEALWA 119 (252)
T ss_dssp ------------------------------------------------------------------H----HHHHHHHHH
T ss_pred ------------------------------------------------------------------H----HHHHHHHHH
Confidence 1 247788999
Q ss_pred HHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh
Q 037612 427 LWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE 506 (663)
Q Consensus 427 L~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~ 506 (663)
|++|+.+....+..+.+.|+++.|+.+|++++++++.+++|+|++|+... ++.++ .++
T Consensus 120 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~------------------~~~- 177 (252)
T 4db8_A 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQIQ------------------AVI- 177 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---HHHHH------------------HHH-
T ss_pred HHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC---hHHHH------------------HHH-
Confidence 99999977666689999999999999999999999999999999997543 22111 011
Q ss_pred hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH
Q 037612 507 KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ 586 (663)
Q Consensus 507 ~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~ 586 (663)
+.++||+|+++|++.+++++..|+++|++++... +++...+++.|++++|++
T Consensus 178 ------------------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~g~i~~L~~ 229 (252)
T 4db8_A 178 ------------------------DAGALPALVQLLSSPNEQILQEALWALSNIASGG----NEQKQAVKEAGALEKLEQ 229 (252)
T ss_dssp ------------------------HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHT
T ss_pred ------------------------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCcHHHHHH
Confidence 2579999999999999999999999999998543 577788999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHhcC
Q 037612 587 LVYFGEQIVQLSALVLLCYIALH 609 (663)
Q Consensus 587 LL~~~~~~~q~~Al~~L~~la~~ 609 (663)
++..+++.++..|+++|++++.|
T Consensus 230 ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 230 LQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp TTTCSSSHHHHTHHHHHHTTC--
T ss_pred HhCCCCHHHHHHHHHHHHHHhcC
Confidence 99999998999999999998643
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-23 Score=236.51 Aligned_cols=326 Identities=14% Similarity=0.125 Sum_probs=257.6
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHhhcc-CChHHHHHHHHHHHHhcCCCc
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIE-EGGVGPLLKLVKE-GKPEGQENAARAIGLLGRDPE 221 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive-~G~Ip~Lv~LL~s-g~~~~q~~Aa~AL~nLs~~~~ 221 (663)
+.-+...++..|.. ++.+.+.+|.+.|.+|+.+ +..|+.+++ .|.+..|+++|++ ++...+..++..|.||+.+.+
T Consensus 332 i~~La~~~~~~L~~-~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~ 409 (778)
T 3opb_A 332 LKQLSEIFINAISR-RIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE 409 (778)
T ss_dssp HHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCc
Confidence 34455666777777 7777799999999999876 455777765 4669999999995 678899999999999996432
Q ss_pred ---------------------------------------chHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCCh
Q 037612 222 ---------------------------------------SVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYP 262 (663)
Q Consensus 222 ---------------------------------------~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~ 262 (663)
++..++++|+||+|+.+++++++.+|+.++|+|.||+. ++
T Consensus 410 ~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~ 488 (778)
T 3opb_A 410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SK 488 (778)
T ss_dssp CCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SG
T ss_pred ccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CH
Confidence 46678899999999999999999999999999999996 58
Q ss_pred hHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCC
Q 037612 263 KCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNK 342 (663)
Q Consensus 263 ~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~ 342 (663)
++|..+++.|++++|+.+|.+++..+
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~------------------------------------------------------ 514 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIG------------------------------------------------------ 514 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---C------------------------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcc------------------------------------------------------
Confidence 99999999999999999997653000
Q ss_pred CCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHH
Q 037612 343 TPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAM 422 (663)
Q Consensus 343 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~ 422 (663)
+ ..|..
T Consensus 515 ---------------------------------------------------------------------~-----~~k~~ 520 (778)
T 3opb_A 515 ---------------------------------------------------------------------E-----PIRIL 520 (778)
T ss_dssp ---------------------------------------------------------------------C-----HHHHH
T ss_pred ---------------------------------------------------------------------h-----HHHHH
Confidence 0 13678
Q ss_pred HHHHHHHHhc-CChhhhHHH-hhhccHHHHHHHhhc--CCh------------hHHHHHHHHHHHHhhhhhcc-HHHHhh
Q 037612 423 AARALWHLAK-GNSPICRSI-TESRALLCFAVLLEK--GPE------------DVQYNSAMALMEITAVAEKD-AELRRS 485 (663)
Q Consensus 423 Aa~AL~~La~-gn~~~~~~I-~esgal~~L~~LL~~--~~~------------~vq~~aa~AL~~i~a~a~~~-~~~rr~ 485 (663)
|+.||.++.. .|+.+.-.- .-.+++++|+.||.. +.. -.+++|++||.||+....++ .++|+.
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 8889988884 333331100 013899999999983 221 23889999999998765322 346664
Q ss_pred hcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-------h----hccHHHHHHhcccCCHHHHHHHH
Q 037612 486 AFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-------E----TRMIVPLVKLLDEREAEVSREAS 554 (663)
Q Consensus 486 a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-------e----~~~I~pLV~LL~~~~~~v~~eAa 554 (663)
+++. +++++.|..++.+.++.++..|+..|.||+...... + .+.+++||.|+++.+.+++++|+
T Consensus 601 Ii~~-----~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAa 675 (778)
T 3opb_A 601 IVST-----KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVA 675 (778)
T ss_dssp HHHS-----HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHh-----cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHH
Confidence 3322 368899999999888899999999999998654321 1 12489999999999999999999
Q ss_pred HHHHhcccCCCCCChhhHHHHHHc-CCHHHHHHHHhc--CChhHHHHHHHHHHHHhcC
Q 037612 555 IALTKFACSDNYLHSDHSKAIISA-GGAKHLVQLVYF--GEQIVQLSALVLLCYIALH 609 (663)
Q Consensus 555 ~AL~~la~~~~~~~~~~~~~Iv~~-ggi~~Lv~LL~~--~~~~~q~~Al~~L~~la~~ 609 (663)
|||++++++. +..++.|++. +|+++|+.++.. +++.+|.+++.+++||+.-
T Consensus 676 gALAnLts~~----~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 676 AIFANIATTI----PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHC----HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCC----hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 9999997543 4567889998 899999999999 7888999999999999863
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-24 Score=214.88 Aligned_cols=206 Identities=13% Similarity=0.095 Sum_probs=171.5
Q ss_pred HHHHHHHHhccCCCH--HHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcch
Q 037612 147 LIWEQVAILYTAGSL--EHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESV 223 (663)
Q Consensus 147 ~v~~li~~L~~~G~~--e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~ 223 (663)
.+..+|..|++ ++. +.+..|+++|.+|+..++.+|..|++.|+||+||++|+++++.+|+.|+|||.||+. +++|+
T Consensus 9 ~i~~lV~lL~s-~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEA-DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCS-SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCC-CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34556999999 987 889999999999998889999999999999999999999999999999999999997 68999
Q ss_pred HHHHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc---cCccchhhhHHHhhhhh
Q 037612 224 EHMIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVSKAT 299 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~---sgt~~~~s~~~v~~~~~ 299 (663)
..|+++|+||+|+++|+ +++.+++++|+.+|.||+. .++++..|.++ +||+|+.++. +|....
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~----------- 154 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEG----------- 154 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGG-----------
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCccc-----------
Confidence 99999999999999998 5789999999999999997 46778888774 7999998874 121000
Q ss_pred hHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccc
Q 037612 300 SIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKS 379 (663)
Q Consensus 300 sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~ 379 (663)
T Consensus 155 -------------------------------------------------------------------------------- 154 (233)
T 3tt9_A 155 -------------------------------------------------------------------------------- 154 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhh-ccHHHHHHHhhcC-
Q 037612 380 NGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITES-RALLCFAVLLEKG- 457 (663)
Q Consensus 380 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~es-gal~~L~~LL~~~- 457 (663)
...+.....|+ .++.+|+.+|+||+.++.++.+.|.+. |.+++|+.+++.+
T Consensus 155 -----------------------~~~~~~~~~~~----~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~ 207 (233)
T 3tt9_A 155 -----------------------DYPKANGLLDF----DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI 207 (233)
T ss_dssp -----------------------GCCCCCTTCCH----HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred -----------------------ccccccccchH----HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhh
Confidence 00001111244 359999999999999888999999876 5579999999853
Q ss_pred -----ChhHHHHHHHHHHHHh
Q 037612 458 -----PEDVQYNSAMALMEIT 473 (663)
Q Consensus 458 -----~~~vq~~aa~AL~~i~ 473 (663)
+...+++|+.+|.|++
T Consensus 208 ~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 208 ADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HTTCTTCHHHHHHHHHHHHHC
T ss_pred hcccchhHHHHHHHHHHHHHH
Confidence 4578999999999986
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-23 Score=200.40 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=177.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhc-CCCcchHHHHHc
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLG-RDPESVEHMIHS 229 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs-~~~~~~~~iv~a 229 (663)
++.+|++ ++.+.|..|+++|.+++..++.++..+++.|+||+|+++|+++++..++.|+++|+||+ .+++++..+++.
T Consensus 17 l~~LL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 17 MVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 4778899 99999999999999999888999999999999999999999999999999999999999 477889999999
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhc
Q 037612 230 GVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASN 309 (663)
Q Consensus 230 GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~ 309 (663)
|++|.|+++|+++++.++..|+|+|+||+.++++.+..+.+.|+||+|+.+|++++
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~------------------------ 151 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------------------------ 151 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC------------------------
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC------------------------
Confidence 99999999999999999999999999999888888888999999999999996431
Q ss_pred ccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccc
Q 037612 310 KTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQN 389 (663)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~ 389 (663)
T Consensus 152 -------------------------------------------------------------------------------- 151 (210)
T 4db6_A 152 -------------------------------------------------------------------------------- 151 (210)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHH
Q 037612 390 HQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL 469 (663)
..++..|+.+|++|+.++..++..+.+.|+++.|+.+++++++++|++|+++|
T Consensus 152 ---------------------------~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL 204 (210)
T 4db6_A 152 ---------------------------EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204 (210)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 12477889999999999899999999999999999999999999999999999
Q ss_pred HHHh
Q 037612 470 MEIT 473 (663)
Q Consensus 470 ~~i~ 473 (663)
.+++
T Consensus 205 ~~l~ 208 (210)
T 4db6_A 205 EKLQ 208 (210)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 9885
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=195.24 Aligned_cols=199 Identities=18% Similarity=0.253 Sum_probs=173.9
Q ss_pred hcCChHHHHHhhccCChHHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHH
Q 037612 187 EEGGVGPLLKLVKEGKPEGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQ 265 (663)
Q Consensus 187 e~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r 265 (663)
..|+.|+|+.||+++++..|..|+++|.+|+ .+++++..+++.|+||.|+++|++++++++..|+|+|+||+.++++.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 4688999999999999999999999999999 577889999999999999999999999999999999999998788999
Q ss_pred HHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCc
Q 037612 266 DLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPS 345 (663)
Q Consensus 266 ~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~ 345 (663)
..+.+.|+||+|+.+|+++.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~------------------------------------------------------------ 109 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPN------------------------------------------------------------ 109 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSC------------------------------------------------------------
T ss_pred HHHHHCCCHHHHHHHHcCCc------------------------------------------------------------
Confidence 99999999999999996431
Q ss_pred cchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHH
Q 037612 346 QMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAAR 425 (663)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~ 425 (663)
+ .++..|++
T Consensus 110 -------------------------------------------------------------------~----~v~~~a~~ 118 (210)
T 4db6_A 110 -------------------------------------------------------------------E----QILQEALW 118 (210)
T ss_dssp -------------------------------------------------------------------H----HHHHHHHH
T ss_pred -------------------------------------------------------------------H----HHHHHHHH
Confidence 1 24778999
Q ss_pred HHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh
Q 037612 426 ALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII 505 (663)
Q Consensus 426 AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll 505 (663)
+|++|+.++...+..+.+.|+++.|+.+|++++.+++.+|+++|++++... ++.++. +
T Consensus 119 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~~------------------~- 176 (210)
T 4db6_A 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQKQA------------------V- 176 (210)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC---HHHHHH------------------H-
T ss_pred HHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---cHHHHH------------------H-
Confidence 999999999999999999999999999999999999999999999997542 222220 1
Q ss_pred hhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhccc
Q 037612 506 EKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFAC 562 (663)
Q Consensus 506 ~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~ 562 (663)
.+.++|++|+++|++.+++++++|+++|.++++
T Consensus 177 ------------------------~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 177 ------------------------KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp ------------------------HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred ------------------------HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 125789999999999999999999999999973
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-23 Score=207.71 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=161.6
Q ss_pred ChHHHHHhhccCCh--HHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHH
Q 037612 190 GVGPLLKLVKEGKP--EGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQD 266 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~--~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~ 266 (663)
.||+||++|.++++ ..|..|+++|.+|+ .+++++..|++.|+||+||++|+++++++|+.|+|+|.||+..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 59999999999987 89999999999999 5788999999999999999999999999999999999999987889999
Q ss_pred HHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCcc
Q 037612 267 LFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQ 346 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~ 346 (663)
.|.+.|+||+||.+|++..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~------------------------------------------------------------- 107 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTR------------------------------------------------------------- 107 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHccCC-------------------------------------------------------------
Confidence 9999999999999996310
Q ss_pred chhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHH
Q 037612 347 MHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARA 426 (663)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~A 426 (663)
+ ..+++.|+.|
T Consensus 108 -----------------------------------------------------------------~----~~~~e~a~~a 118 (233)
T 3tt9_A 108 -----------------------------------------------------------------D----LETKKQITGL 118 (233)
T ss_dssp -----------------------------------------------------------------C----HHHHHHHHHH
T ss_pred -----------------------------------------------------------------C----HHHHHHHHHH
Confidence 1 1247889999
Q ss_pred HHHHhcCChhhhHHHhhhccHHHHHHHhh---c-------------CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCC
Q 037612 427 LWHLAKGNSPICRSITESRALLCFAVLLE---K-------------GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPN 490 (663)
Q Consensus 427 L~~La~gn~~~~~~I~esgal~~L~~LL~---~-------------~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~ 490 (663)
||+|+. ++.+...|.+ +++++|+.++. + .++++++||+.+|++++.. +++.|+..-.
T Consensus 119 L~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~---~~~~R~~~r~-- 191 (233)
T 3tt9_A 119 LWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA---GADGRKAMRR-- 191 (233)
T ss_dssp HHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS---CHHHHHHHHT--
T ss_pred HHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcC---CHHHHHHHHH--
Confidence 999996 6788888887 57999998763 1 2569999999999999764 3344553211
Q ss_pred CchhHhHHHHHHHHhhhc------CcchhhHHHHHHHHhhh
Q 037612 491 APACKAVVDQLFRIIEKA------DSDLLIPCIKAVGNLAR 525 (663)
Q Consensus 491 ~~a~~~vv~qL~~ll~~~------~~~l~~~a~~aLg~La~ 525 (663)
+.++|+.|+.+++.. ++..++.|+++|.||+.
T Consensus 192 ---~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 192 ---CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp ---STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred ---CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 246788888888763 34567888888888864
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=210.06 Aligned_cols=233 Identities=14% Similarity=0.140 Sum_probs=181.6
Q ss_pred CChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHH-hhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHH
Q 037612 201 GKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAK-ILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279 (663)
Q Consensus 201 g~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~-lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~ 279 (663)
++.+.+..|+..|.+++.+.+|...+++.|++|+|+. +|+++++++++.|+|+|++++.+++++|+.+.+.|++|+|+.
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3567899999999999999899999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhc
Q 037612 280 HLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKV 359 (663)
Q Consensus 280 LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~ 359 (663)
+|++++
T Consensus 132 LL~~~~-------------------------------------------------------------------------- 137 (296)
T 1xqr_A 132 LLDRDA-------------------------------------------------------------------------- 137 (296)
T ss_dssp HHHHCS--------------------------------------------------------------------------
T ss_pred HHccCC--------------------------------------------------------------------------
Confidence 996321
Q ss_pred CCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhH
Q 037612 360 GTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICR 439 (663)
Q Consensus 360 ~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~ 439 (663)
+ ..+++.|++||++|++|+.....
T Consensus 138 ----------------------------------------------------~----~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 138 ----------------------------------------------------C----DTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp ----------------------------------------------------C----HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------------------------------C----HHHHHHHHHHHHHHHcCCcHHHH
Confidence 0 02356677777777766543322
Q ss_pred HHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHH
Q 037612 440 SITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKA 519 (663)
Q Consensus 440 ~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~a 519 (663)
.+.+
T Consensus 162 ~~~~---------------------------------------------------------------------------- 165 (296)
T 1xqr_A 162 QFLR---------------------------------------------------------------------------- 165 (296)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred HHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 037612 520 VGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSA 599 (663)
Q Consensus 520 Lg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~A 599 (663)
.++||+|+++|+++++.++++|+|||++++.+. +++...+++.|++++|+.||.++++.+|+.|
T Consensus 166 ------------~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~----~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~a 229 (296)
T 1xqr_A 166 ------------LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH----PEHKGTLCSMGMVQQLVALVRTEHSPFHEHV 229 (296)
T ss_dssp ------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHH
T ss_pred ------------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC----hHHHHHHHHcCCHHHHHHHHcCCChhHHHHH
Confidence 357788888888888888888888888887653 4778899999999999999999999899999
Q ss_pred HHHHHHHhcCCCChHHHHhcc---chhhhhhccccccccccC-CcHHHHHHHHHHHHhhhhcC
Q 037612 600 LVLLCYIALHVPDSEDLAQAE---VLTVLEWTSKQSHMTQDE-TVDPLLQDAKSRLELYQSRG 658 (663)
Q Consensus 600 l~~L~~la~~~~~~~~i~~~~---vl~~L~~~~~~~~~~q~~-~~~~l~~~a~~~le~~~~~~ 658 (663)
+.+|++|+...+........+ ....|+.. ....|.+ +.+++|.++..+++.|++..
T Consensus 230 l~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~---~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 230 LGALCSLVTDFPQGVRECREPELGLEELLRHR---CQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH---HHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhCChhHHHHHhccHHHHHHHHHHH---HHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999987643322222222 23344422 3445644 58999999999999999743
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=205.12 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-hhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLK-LVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFA 236 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~-LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv 236 (663)
++.+.|..|+..|.++... ..|...+++.|++|+||. +|+++++.+|+.|+|+|+|++. ++.++..+++.|++|+|+
T Consensus 52 ~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 52 ADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 4568999999999999864 668999999999999999 9999999999999999999996 567899999999999999
Q ss_pred Hhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccc
Q 037612 237 KILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNAN 315 (663)
Q Consensus 237 ~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~ 315 (663)
++|++ .++.+++.|+|||+||+.+++..++.|.+.|+||+|+.+|+++.
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d------------------------------ 180 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV------------------------------ 180 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC------------------------------
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC------------------------------
Confidence 99986 47899999999999999888888889999999999999996431
Q ss_pred cCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccccccc
Q 037612 316 ANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQ 395 (663)
Q Consensus 316 ~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~ 395 (663)
T Consensus 181 -------------------------------------------------------------------------------- 180 (296)
T 1xqr_A 181 -------------------------------------------------------------------------------- 180 (296)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 037612 396 HGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAV 475 (663)
Q Consensus 396 ~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~ 475 (663)
.++|..|++||.+|+.+++..+..+.+.|++++|+.||.+++.++++.+++||.+|..+
T Consensus 181 ---------------------~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 181 ---------------------QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 12577899999999999999999999999999999999999999999999999999866
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-21 Score=219.23 Aligned_cols=294 Identities=12% Similarity=0.110 Sum_probs=224.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh--------------------------------------hhHHHHHhc
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDND--------------------------------------RYGKLIIEE 188 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~--------------------------------------~~~~~Ive~ 188 (663)
.+..|+.+++..++...-..++..|.||+...+ .+++.+.+.
T Consensus 377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea 456 (778)
T 3opb_A 377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT 456 (778)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence 345567777731555667778888888865322 167888999
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChh---HHHHHHHHHHHHhcCChhHH
Q 037612 189 GGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMK---VQAVVAWAVSELAGNYPKCQ 265 (663)
Q Consensus 189 G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~---vq~~Aa~aL~nLA~~~~~~r 265 (663)
|+||+|+.+++++++..|+.|+|+|.|||.++++|..+++.|++++|+++|.+++.. ++..|+.||++|+... +..
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~-np~ 535 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT-NPG 535 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-CHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-CHH
Confidence 999999999999999999999999999999999999999999999999999998654 8999999999999532 222
Q ss_pred HHHHh---CCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCC
Q 037612 266 DLFAQ---HNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNK 342 (663)
Q Consensus 266 ~~i~~---~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~ 342 (663)
..|.. .|+||||++||..++.... . ++
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~--~-------~l----------------------------------------- 565 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLPRSTPVDD--N-------PL----------------------------------------- 565 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSCCSSSCSS--C-------C------------------------------------------
T ss_pred HHcCCCccccchHHHHHHcCCCCCccc--c-------cc-----------------------------------------
Confidence 33421 3999999999974320000 0 00
Q ss_pred CCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHH
Q 037612 343 TPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAM 422 (663)
Q Consensus 343 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~ 422 (663)
. .++.-+ ...+..
T Consensus 566 ------------------------------------~---------------------------~~~~~~----~l~~fe 578 (778)
T 3opb_A 566 ------------------------------------H---------------------------NDEQIK----LTDNYE 578 (778)
T ss_dssp -----------------------------------------------------------------CCCCC----HHHHHH
T ss_pred ------------------------------------c---------------------------cccccc----HHHHHH
Confidence 0 000000 124778
Q ss_pred HHHHHHHHhcCC----hhhhHHHhh-hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHH-hhhcCCCCchhHh
Q 037612 423 AARALWHLAKGN----SPICRSITE-SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELR-RSAFKPNAPACKA 496 (663)
Q Consensus 423 Aa~AL~~La~gn----~~~~~~I~e-sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~r-r~a~~~~~~a~~~ 496 (663)
|+.||.|||..+ .+.+..|.+ .|++++|..||.+++..+|..|+++|+|++...+ .+ +..|....|.+..
T Consensus 579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e----~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL----TIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG----GTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH----HHHHHHHhhcCchhhc
Confidence 999999999976 245777887 4999999999999999999999999999986433 22 2245444555555
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh--H---h-hccHHHHHHhccc--CCHHHHHHHHHHHHhccc
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA--T---E-TRMIVPLVKLLDE--REAEVSREASIALTKFAC 562 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~--~---e-~~~I~pLV~LL~~--~~~~v~~eAa~AL~~la~ 562 (663)
-++.|+.++..+|++++..|+.||++++..+.. . + .++|.+|+++|.+ .+++++..++.+|.|+++
T Consensus 655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999754433 1 2 4799999999998 899999999999999985
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-12 Score=132.58 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=178.5
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIH 228 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~ 228 (663)
..++..|.. ++...|..|+++|+.+.. .+.+++|+++|++.++..+..|+++|+.+...+.....
T Consensus 26 ~~L~~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~--- 90 (280)
T 1oyz_A 26 DELFRLLDD-HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN--- 90 (280)
T ss_dssp HHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH---
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH---
Confidence 345778888 899999999999998751 24689999999988899999999999998754332211
Q ss_pred cCchHHHHH-hhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 229 SGVCLVFAK-ILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 229 aGaIp~Lv~-lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
.++.|.+ +++++++.++..++++|+++...++... ..+++.|+.+|.+.
T Consensus 91 --l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~----------------------- 140 (280)
T 1oyz_A 91 --VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDK----------------------- 140 (280)
T ss_dssp --HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCS-----------------------
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCC-----------------------
Confidence 3344442 4567888999999999999974332211 12344444444321
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
T Consensus 141 -------------------------------------------------------------------------------- 140 (280)
T 1oyz_A 141 -------------------------------------------------------------------------------- 140 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
++ .++..|+.+|+++.. ..+++.|..+|+..+++|+..+++
T Consensus 141 ------------------------~~----~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~ 181 (280)
T 1oyz_A 141 ------------------------ST----NVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAF 181 (280)
T ss_dssp ------------------------CH----HHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHH
T ss_pred ------------------------CH----HHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 246678888876532 347889999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
+|..+... + ..+++.|+.++++.++.++..++.+||.+. ....+++|+.+|.+.+
T Consensus 182 aL~~~~~~---~---------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~------~~~~~~~L~~~l~d~~- 236 (280)
T 1oyz_A 182 AININKYD---N---------------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK------DKRVLSVLCDELKKNT- 236 (280)
T ss_dssp HHHHHTCC---C---------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT------CGGGHHHHHHHHTSSS-
T ss_pred HHHhhccC---c---------------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC------CHhhHHHHHHHhcCcc-
Confidence 99877311 1 235678888998888899999999999886 3468999999997654
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHH
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLL 603 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L 603 (663)
++..|++||+++.. ...++.|..++... ++.....++..|
T Consensus 237 -vr~~a~~aL~~i~~---------------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 237 -VYDDIIEAAGELGD---------------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp -CCHHHHHHHHHHCC---------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCc---------------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 89999999999842 14688899988754 444444455554
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-13 Score=135.18 Aligned_cols=259 Identities=15% Similarity=0.115 Sum_probs=192.1
Q ss_pred HHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhH
Q 037612 185 IIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKC 264 (663)
Q Consensus 185 Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~ 264 (663)
+.+.+.++.|+.+|+++++..+..|+++|+++.. .++++.|+++|+++++.++..|+++|+.+....
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--- 85 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--- 85 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---
Confidence 3456789999999999999999999999999972 357899999999999999999999999987432
Q ss_pred HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCC
Q 037612 265 QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTP 344 (663)
Q Consensus 265 r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 344 (663)
..++.++.+|..- +. .
T Consensus 86 -------~~~~~l~~~L~~~-------------------~~---~----------------------------------- 101 (280)
T 1oyz_A 86 -------KCEDNVFNILNNM-------------------AL---N----------------------------------- 101 (280)
T ss_dssp -------TTHHHHHHHHHHH-------------------HH---H-----------------------------------
T ss_pred -------ccchHHHHHHHHH-------------------Hh---c-----------------------------------
Confidence 1244455544210 00 0
Q ss_pred ccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHH
Q 037612 345 SQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAA 424 (663)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa 424 (663)
-+|+ .++..|+
T Consensus 102 -----------------------------------------------------------------d~~~----~vr~~a~ 112 (280)
T 1oyz_A 102 -----------------------------------------------------------------DKSA----CVRATAI 112 (280)
T ss_dssp -----------------------------------------------------------------CSCH----HHHHHHH
T ss_pred -----------------------------------------------------------------CCCH----HHHHHHH
Confidence 0122 2578899
Q ss_pred HHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHH
Q 037612 425 RALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRI 504 (663)
Q Consensus 425 ~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~l 504 (663)
.+|+++..+++.. ....++.|..+|.+.++.++..++++|.++.. ..+++.|+++
T Consensus 113 ~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------------------~~~~~~L~~~ 167 (280)
T 1oyz_A 113 ESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND--------------------KATIPLLINL 167 (280)
T ss_dssp HHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------------------CCHHHHHHH
T ss_pred HHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Confidence 9999887654322 23568899999999999999999999986631 1257889999
Q ss_pred hhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHH
Q 037612 505 IEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHL 584 (663)
Q Consensus 505 l~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~L 584 (663)
+.+.++.++..++.+||.+... ....+++|+.+|++.++.|+.+|+++|+++.. ...++.|
T Consensus 168 l~d~~~~vr~~a~~aL~~~~~~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---------------~~~~~~L 228 (280)
T 1oyz_A 168 LKDPNGDVRNWAAFAININKYD----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---------------KRVLSVL 228 (280)
T ss_dssp HTCSSHHHHHHHHHHHHHHTCC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---------------GGGHHHH
T ss_pred HcCCCHHHHHHHHHHHHhhccC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---------------HhhHHHH
Confidence 9998899999999999988522 23579999999999999999999999999852 2378999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHH
Q 037612 585 VQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651 (663)
Q Consensus 585 v~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~l 651 (663)
+.+|..++ ++..|+.+|..+. + ..+++.|. ...+++...++..++...|
T Consensus 229 ~~~l~d~~--vr~~a~~aL~~i~----~------~~~~~~L~------~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 229 CDELKKNT--VYDDIIEAAGELG----D------KTLLPVLD------TMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHTSSS--CCHHHHHHHHHHC----C------GGGHHHHH------HHHTTSSCCHHHHHHHHHH
T ss_pred HHHhcCcc--HHHHHHHHHHhcC----c------hhhhHHHH------HHHhcCCCcHHHHHHHHHh
Confidence 99998755 6667888887762 1 35677776 3333334445555555544
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-12 Score=141.39 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=210.9
Q ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcC-CCc--
Q 037612 148 IWEQVAILYTAG-SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGR-DPE-- 221 (663)
Q Consensus 148 v~~li~~L~~~G-~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~-~~~-- 221 (663)
|..|+.+|++ + -.+.|+.|...|.++++ +|+..++ .+|+|+|+..|+.+ +.+.-+.+..+|.++-. +++
T Consensus 23 I~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk---~y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 23 IQKLCDRVAS-STLLDDRRNAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHH-CCSHHHHHHHHHHHHHTTT---TTTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHhh-ccchhHHHHHHHHHHHHHH---HhHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 4456889999 6 58999999999999985 3666665 78999999999975 57888889999988764 222
Q ss_pred ---------------chHHH-HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh-HHHHHHh-CCcHHHHHHHhcc
Q 037612 222 ---------------SVEHM-IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK-CQDLFAQ-HNIIRLLVGHLAF 283 (663)
Q Consensus 222 ---------------~~~~i-v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~-~r~~i~~-~g~I~~LV~LL~s 283 (663)
+...+ -+.+.|+.|+.+|++.+..++-.+...|..|+.+.++ .|+.|.. .++|+.||.+|..
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 11223 3678999999999999999999999999999987776 8988885 5999999999963
Q ss_pred CccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCc
Q 037612 284 ETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKP 363 (663)
Q Consensus 284 gt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~ 363 (663)
..
T Consensus 178 ~r------------------------------------------------------------------------------ 179 (651)
T 3grl_A 178 SR------------------------------------------------------------------------------ 179 (651)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred ch------------------------------------------------------------------------------
Confidence 21
Q ss_pred ccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhh
Q 037612 364 VQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITE 443 (663)
Q Consensus 364 ~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~e 443 (663)
..++..|...|.+|+++|..+++.+.-
T Consensus 180 -----------------------------------------------------E~iRneallLL~~Lt~~n~~iQklVAF 206 (651)
T 3grl_A 180 -----------------------------------------------------EVIRNDGVLLLQALTRSNGAIQKIVAF 206 (651)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 124556778889999999999999999
Q ss_pred hccHHHHHHHhhcCCh----hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHH
Q 037612 444 SRALLCFAVLLEKGPE----DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKA 519 (663)
Q Consensus 444 sgal~~L~~LL~~~~~----~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~a 519 (663)
.|+++.|..+++.+.+ .+...|...|.++... |+-.++ .|.
T Consensus 207 EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~---N~sNQ~-~Fr------------------------------- 251 (651)
T 3grl_A 207 ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN---NNSNQN-FFK------------------------------- 251 (651)
T ss_dssp TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT---CHHHHH-HHH-------------------------------
T ss_pred hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc---CHHHHH-HHH-------------------------------
Confidence 9999999999997554 7777888888777654 333332 122
Q ss_pred HHHhhhchhhHhhccHHHHHHhcccCCHH------HHHH---HHHHHHhcccCCCCC--ChhhHHHHHHcCCHHHHHHHH
Q 037612 520 VGNLARTFKATETRMIVPLVKLLDEREAE------VSRE---ASIALTKFACSDNYL--HSDHSKAIISAGGAKHLVQLV 588 (663)
Q Consensus 520 Lg~La~~~~~~e~~~I~pLV~LL~~~~~~------v~~e---Aa~AL~~la~~~~~~--~~~~~~~Iv~~ggi~~Lv~LL 588 (663)
|++.||+|..+|..+++. ...+ +...+.-|.++++.. ...|++++.+.|++++|++|+
T Consensus 252 -----------Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll 320 (651)
T 3grl_A 252 -----------EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL 320 (651)
T ss_dssp -----------HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred -----------HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Confidence 344555555555322211 1112 222233334443321 357899999999999999998
Q ss_pred hcC--ChhHHHHHHHHHHHHhcCC-CChHHHHhcc
Q 037612 589 YFG--EQIVQLSALVLLCYIALHV-PDSEDLAQAE 620 (663)
Q Consensus 589 ~~~--~~~~q~~Al~~L~~la~~~-~~~~~i~~~~ 620 (663)
.++ ...++..|+.++..+..+. .+++.+++..
T Consensus 321 ~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 321 MATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 875 4446778999998887544 4466677543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-11 Score=133.73 Aligned_cols=328 Identities=15% Similarity=0.161 Sum_probs=230.9
Q ss_pred HHHhccCC--CHHHHHHHHHHHHHhhcCChh-----------------hHHHH-HhcCChHHHHHhhccCChHHHHHHHH
Q 037612 152 VAILYTAG--SLEHKSDAAASLVSLARDNDR-----------------YGKLI-IEEGGVGPLLKLVKEGKPEGQENAAR 211 (663)
Q Consensus 152 i~~L~~~G--~~e~k~~AA~~L~~La~~~~~-----------------~~~~I-ve~G~Ip~Lv~LL~sg~~~~q~~Aa~ 211 (663)
+..|+. . +.|.-..+..+|.++...++. +.+.+ -+.+.|+.|+.+|++.+-..+.++..
T Consensus 66 i~~L~~-d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alq 144 (651)
T 3grl_A 66 IHVLQT-DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVK 144 (651)
T ss_dssp HHHHHS-CTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHhc-ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHH
Confidence 777776 4 555666677788776554332 22233 35678999999999999999999999
Q ss_pred HHHHhcCC-Cc-chHHHHHc-CchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccch
Q 037612 212 AIGLLGRD-PE-SVEHMIHS-GVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQE 288 (663)
Q Consensus 212 AL~nLs~~-~~-~~~~iv~a-GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~ 288 (663)
.|..|+.+ ++ +...|..+ +|||.||.+|.+..+.++..+...|.+|+.++++.|..++-+|+++.|+.+++.+..
T Consensus 145 lL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~-- 222 (651)
T 3grl_A 145 LLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN-- 222 (651)
T ss_dssp HHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG--
T ss_pred HHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC--
Confidence 99999953 44 68888866 999999999999999999999999999999999999999999999999999974310
Q ss_pred hhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccc
Q 037612 289 HSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQG 368 (663)
Q Consensus 289 ~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (663)
T Consensus 223 -------------------------------------------------------------------------------- 222 (651)
T 3grl_A 223 -------------------------------------------------------------------------------- 222 (651)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHH
Q 037612 369 NVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALL 448 (663)
Q Consensus 369 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~ 448 (663)
.+| | .+..-|...|.+|.++|+.|+..+-|.+.++
T Consensus 223 ----------~~G--------------------g---------------ivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 223 ----------SDG--------------------G---------------IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp ----------GGS--------------------H---------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred ----------Ccc--------------------c---------------hhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 001 0 1345577889999999999999999999999
Q ss_pred HHHHHhhcCCh-----hHHHHHHHHHHHHh----hh-hh--ccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC--cchhh
Q 037612 449 CFAVLLEKGPE-----DVQYNSAMALMEIT----AV-AE--KDAELRRSAFKPNAPACKAVVDQLFRIIEKAD--SDLLI 514 (663)
Q Consensus 449 ~L~~LL~~~~~-----~vq~~aa~AL~~i~----a~-a~--~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~--~~l~~ 514 (663)
.|..||+.+.+ +++..-++++.+|- .. +. .+...+++.++ .+++.+|++++.... ..++.
T Consensus 258 ~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~------~g~l~~Ll~ll~~~~~p~~i~~ 331 (651)
T 3grl_A 258 RMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ------CGLLQQLCTILMATGVPADILT 331 (651)
T ss_dssp GGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------TTHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH------CCCHHHHHHHHccCCCCHHHHH
Confidence 99999986543 23333333333332 11 11 12334443222 357889999988753 56889
Q ss_pred HHHHHHHHhhhchhhHhhc----------cHHHHHHh----c-ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHc-
Q 037612 515 PCIKAVGNLARTFKATETR----------MIVPLVKL----L-DEREAEVSREASIALTKFACSDNYLHSDHSKAIISA- 578 (663)
Q Consensus 515 ~a~~aLg~La~~~~~~e~~----------~I~pLV~L----L-~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~- 578 (663)
.++.++|.+.+.....+.. ..|.++.+ + +...++++.+|+.++..+..+ +.+.+..|+..
T Consensus 332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~----N~~~Q~~i~~~l 407 (651)
T 3grl_A 332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK----NQKGQGEIVSTL 407 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC----CHHHHHHHHHhc
Confidence 9999999998865543211 13445554 4 345689999999999888644 34556666643
Q ss_pred -----CC----H---HHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHH
Q 037612 579 -----GG----A---KHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLA 617 (663)
Q Consensus 579 -----gg----i---~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~ 617 (663)
+| + ..|+.-+-+.|+-.---|..+|.++..+.+..++.+
T Consensus 408 lp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~ 458 (651)
T 3grl_A 408 LPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQL 458 (651)
T ss_dssp SSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 21 1 234555556677332348888888877766655543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=113.71 Aligned_cols=187 Identities=21% Similarity=0.210 Sum_probs=151.3
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 188 EGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
.+.++.|+++|+++++..+..|+.+|..+.. ..+++.|+++|.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4679999999999999999999999998764 3689999999999999999999999999852
Q ss_pred HHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccc
Q 037612 268 FAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQM 347 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~ 347 (663)
.++++.|+.+|.+.
T Consensus 80 ---~~~~~~L~~~l~~~--------------------------------------------------------------- 93 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDE--------------------------------------------------------------- 93 (211)
T ss_dssp ---GGGHHHHHHHTTCS---------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHcCC---------------------------------------------------------------
Confidence 24667777766422
Q ss_pred hhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHH
Q 037612 348 HNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARAL 427 (663)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL 427 (663)
|+ .++..|+.+|
T Consensus 94 ----------------------------------------------------------------~~----~vr~~a~~aL 105 (211)
T 3ltm_A 94 ----------------------------------------------------------------DG----WVRQSAAVAL 105 (211)
T ss_dssp ----------------------------------------------------------------SH----HHHHHHHHHH
T ss_pred ----------------------------------------------------------------CH----HHHHHHHHHH
Confidence 11 2466778888
Q ss_pred HHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhh
Q 037612 428 WHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEK 507 (663)
Q Consensus 428 ~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~ 507 (663)
+++.. ..+++.|..+|++.++.|+..++++|.++.. ...++.|.+++++
T Consensus 106 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d 154 (211)
T 3ltm_A 106 GQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------------ERAVEPLIKALKD 154 (211)
T ss_dssp HHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC
T ss_pred HHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHcC
Confidence 77642 3578899999999999999999999987731 1256788899988
Q ss_pred cCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccC
Q 037612 508 ADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACS 563 (663)
Q Consensus 508 ~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~ 563 (663)
.++.++..++.+|+.+.. ..+++.|..+|++.++.|+..|..+|.++...
T Consensus 155 ~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 889999999999998853 45799999999999999999999999999744
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-10 Score=111.13 Aligned_cols=185 Identities=22% Similarity=0.217 Sum_probs=151.1
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 188 EGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
.+..+.++++|+++++..+..|+++|..+.. .++++.|+++|.++++.++..++++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4678999999999999999999999998764 3689999999999999999999999998853
Q ss_pred HHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccc
Q 037612 268 FAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQM 347 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~ 347 (663)
..+++.|+.+|.+.
T Consensus 75 ---~~~~~~L~~~l~d~--------------------------------------------------------------- 88 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDE--------------------------------------------------------------- 88 (201)
T ss_dssp ---GGGHHHHHHHTTCS---------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHcCC---------------------------------------------------------------
Confidence 14667777766421
Q ss_pred hhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHH
Q 037612 348 HNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARAL 427 (663)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL 427 (663)
|+ .++..|+++|
T Consensus 89 ----------------------------------------------------------------~~----~vr~~a~~aL 100 (201)
T 3ltj_A 89 ----------------------------------------------------------------DG----WVRQSAAVAL 100 (201)
T ss_dssp ----------------------------------------------------------------SH----HHHHHHHHHH
T ss_pred ----------------------------------------------------------------CH----HHHHHHHHHH
Confidence 11 2466788888
Q ss_pred HHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhh
Q 037612 428 WHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEK 507 (663)
Q Consensus 428 ~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~ 507 (663)
+++.. ..+++.|..+|++.++.|+..++++|..+.. ...++.|.+++.+
T Consensus 101 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d 149 (201)
T 3ltj_A 101 GQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------------ERAVEPLIKALKD 149 (201)
T ss_dssp HHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------------------GGGHHHHHHHTTC
T ss_pred HHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHcC
Confidence 77642 3478889999999999999999999987731 1256788899998
Q ss_pred cCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 508 ADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 508 ~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
.++.++..++.+|+.+.. ...++.|..+|++.++.|+..|..+|.++.
T Consensus 150 ~~~~vr~~A~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp SSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 888999999999998842 357999999999999999999999999884
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.5e-10 Score=123.38 Aligned_cols=335 Identities=13% Similarity=0.083 Sum_probs=222.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC--CcchHHHHHc
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD--PESVEHMIHS 229 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~~~~iv~a 229 (663)
...++. .+...|..|+.+|+.++...+. .......+|.|+.+++..++.++..|+.+|..++.. ++.+....-.
T Consensus 248 ~~~~~d-~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 248 RQAAED-KSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHTC-SSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHccC-CCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 345566 7788899999999988753111 122345689999999988899999999999999853 2322223345
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhc
Q 037612 230 GVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASN 309 (663)
Q Consensus 230 GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~ 309 (663)
..+|.+.+++++.++.++..++++|..++..-+. . ......+|.|..+|+.+.
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~p~l~~~l~d~~------------------------ 376 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDEC------------------------ 376 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSC------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h-HHHHHHHHHHHHHhCCCc------------------------
Confidence 6789999999999999999999999999852111 1 112235566666665321
Q ss_pred ccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccc
Q 037612 310 KTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQN 389 (663)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~ 389 (663)
T Consensus 377 -------------------------------------------------------------------------------- 376 (588)
T 1b3u_A 377 -------------------------------------------------------------------------------- 376 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHH
Q 037612 390 HQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL 469 (663)
+ .++..|..+|..+....... ......++.|..+++..+..++..++.+|
T Consensus 377 -----------------------~----~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l 426 (588)
T 1b3u_A 377 -----------------------P----EVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYM 426 (588)
T ss_dssp -----------------------H----HHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred -----------------------h----HHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 0 11222223333322211000 01123466777777777888999999998
Q ss_pred HHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--hccHHHHHHhcccCCH
Q 037612 470 MEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--TRMIVPLVKLLDEREA 547 (663)
Q Consensus 470 ~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~~~I~pLV~LL~~~~~ 547 (663)
..++..-+. ..|. ..+++.+++++.+.+..++..++.+++.++..+.... ..++|.|++++++.+.
T Consensus 427 ~~l~~~~~~------~~~~------~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~ 494 (588)
T 1b3u_A 427 PLLAGQLGV------EFFD------EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY 494 (588)
T ss_dssp HHHHHHHCG------GGCC------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH
T ss_pred HHHHHHcCH------HHHH------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCH
Confidence 887643221 1111 2467778888887778899999999999988776532 3689999999988999
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhh
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEW 627 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~ 627 (663)
.++..++++++.++.. ......-..-++.|++++..+++.++..++.+|+.++...+. ......++|.|..
T Consensus 495 ~~R~~a~~~l~~l~~~-------~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~ 565 (588)
T 1b3u_A 495 LHRMTTLFCINVLSEV-------CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEK 565 (588)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHH
Confidence 9999999999998621 011123345778888999888888888899999999766553 2333566677653
Q ss_pred ccccccccccCCcHHHHHHHHHHHH
Q 037612 628 TSKQSHMTQDETVDPLLQDAKSRLE 652 (663)
Q Consensus 628 ~~~~~~~~q~~~~~~l~~~a~~~le 652 (663)
. ..-.++.++..+++|+..++
T Consensus 566 l----~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 566 L----TQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp H----TTCSSHHHHHHHHHHHHHTT
T ss_pred H----cCCCchhHHHHHHHHHHHhh
Confidence 1 11235577778888877654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.25 E-value=7.5e-10 Score=126.14 Aligned_cols=320 Identities=15% Similarity=0.132 Sum_probs=204.6
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCc-c
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE-S 222 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~-~ 222 (663)
...++-.+...|.. .+...|..|+.+|..+...+++ .+.+.+.+|.|.++|.+.++.++..|+++|..++.+.. .
T Consensus 119 ~~~l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 119 TEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 34445556778888 9999999999999999876543 33345789999999998899999999999999997543 2
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
.......+.++.|++.|.+.++-.|.....+|.+++..++... ...++.+..+|++.
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~------------------ 251 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHA------------------ 251 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSS------------------
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCC------------------
Confidence 1111223456777877777777777777777777764332211 11233333333211
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
T Consensus 252 -------------------------------------------------------------------------------- 251 (591)
T 2vgl_B 252 -------------------------------------------------------------------------------- 251 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC---ChhhhHHHhhhccHHHHHHHhhcCCh
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG---NSPICRSITESRALLCFAVLLEKGPE 459 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g---n~~~~~~I~esgal~~L~~LL~~~~~ 459 (663)
++. +...|++++..+... ++.....+ -.+..++|+.|+. .++
T Consensus 252 -----------------------------~~~----V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~ 296 (591)
T 2vgl_B 252 -----------------------------NSA----VVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEP 296 (591)
T ss_dssp -----------------------------TTH----HHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCH
T ss_pred -----------------------------ChH----HHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCc
Confidence 111 234455555554421 11111111 1233455555554 566
Q ss_pred hHHHHHHHHHHHHhhhh---------------hccHHHHhhhcC-----CCCchhHhHHHHHHHHhhhcCcchhhHHHHH
Q 037612 460 DVQYNSAMALMEITAVA---------------EKDAELRRSAFK-----PNAPACKAVVDQLFRIIEKADSDLLIPCIKA 519 (663)
Q Consensus 460 ~vq~~aa~AL~~i~a~a---------------~~~~~~rr~a~~-----~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~a 519 (663)
++|+-+..+|..|.... .++..+|+.++. .+..-...+++.|...+++.|++++..++.+
T Consensus 297 ~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~a 376 (591)
T 2vgl_B 297 EVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRA 376 (591)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777777776665320 112334443322 1222235577888888888889999999999
Q ss_pred HHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-CChhHHHH
Q 037612 520 VGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLS 598 (663)
Q Consensus 520 Lg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~~~~q~~ 598 (663)
|+.++..|.......++.|+++|+.....+..++..++.++..... +. ...+++.|+..+.. .++.+...
T Consensus 377 I~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p----~~-----~~~~v~~L~~~l~~~~~~~~~~~ 447 (591)
T 2vgl_B 377 IGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP----NK-----YESIIATLCENLDSLDEPDARAA 447 (591)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC----SS-----CCTTHHHHHHTTTTCCSHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc----ch-----HHHHHHHHHHHHHhccCHHHHHH
Confidence 9999999876667899999999999999999999999988853211 10 24567788887763 45555556
Q ss_pred HHHHHHHHhcCCCChH
Q 037612 599 ALVLLCYIALHVPDSE 614 (663)
Q Consensus 599 Al~~L~~la~~~~~~~ 614 (663)
++|+|+-.+.+.++..
T Consensus 448 ~~wilGey~~~~~~~~ 463 (591)
T 2vgl_B 448 MIWIVGEYAERIDNAD 463 (591)
T ss_dssp HHHHHHTTCTTCTTHH
T ss_pred HHHHHHcccccccCHH
Confidence 7777776655554433
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=136.98 Aligned_cols=314 Identities=13% Similarity=0.077 Sum_probs=202.5
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHH-H---HhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcc
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKL-I---IEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPES 222 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~-I---ve~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~ 222 (663)
++-.++..+++ ++...|+.|..+|+.++.+.+..-.. . .-...+|+|++++++.++.++..|+++|.++......
T Consensus 129 ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 129 LLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp HHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 45566888899 99999999999999998643321110 0 0124689999999988899999999999988754332
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
...-.-...++.|.+++.+++++++..++++|.+|+...++.-....+ +.++.++.++....
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~----------------- 269 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQD----------------- 269 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSS-----------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCc-----------------
Confidence 211112357889999999999999999999999999755443111111 24444444443211
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
T Consensus 270 -------------------------------------------------------------------------------- 269 (852)
T 4fdd_A 270 -------------------------------------------------------------------------------- 269 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhh---hccHHHHHHHh-----
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITE---SRALLCFAVLL----- 454 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~e---sgal~~L~~LL----- 454 (663)
+ .++..|+..+..++... .++.... ...++.+...+
T Consensus 270 ------------------------------~----~vr~~a~e~l~~l~~~~--~~~~~~~~~~~~l~p~ll~~l~~~e~ 313 (852)
T 4fdd_A 270 ------------------------------E----NVALEACEFWLTLAEQP--ICKDVLVRHLPKLIPVLVNGMKYSDI 313 (852)
T ss_dssp ------------------------------H----HHHHHHHHHHHHHTTST--THHHHHTTTHHHHHHHHHHHTSCCHH
T ss_pred ------------------------------H----HHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHHcCCcHh
Confidence 1 11233333333333211 1111111 11223333333
Q ss_pred -----hc------------CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHH
Q 037612 455 -----EK------------GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCI 517 (663)
Q Consensus 455 -----~~------------~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~ 517 (663)
+. ..-.+++.++.+|..++..... .....+++.+..++.+.+..++..++
T Consensus 314 d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-------------~~~~~l~~~l~~~l~~~~~~~R~aa~ 380 (852)
T 4fdd_A 314 DIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-------------ELLPHILPLLKELLFHHEWVVKESGI 380 (852)
T ss_dssp HHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-------------HHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 11 1225788899999888654321 11234667777888888889999999
Q ss_pred HHHHHhhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCCh
Q 037612 518 KAVGNLARTFKAT----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQ 593 (663)
Q Consensus 518 ~aLg~La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~ 593 (663)
.+||+++...... -..++|.|+.+|++.++.|+..|+|+|++++..-. .......-.+-++.|+..|..+++
T Consensus 381 ~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~----~~~~~~~~~~ll~~L~~~L~d~~~ 456 (852)
T 4fdd_A 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV----SQPPDTYLKPLMTELLKRILDSNK 456 (852)
T ss_dssp HHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH----HSCTTTTHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHhCCCH
Confidence 9999999865432 13579999999999999999999999999974210 000000112456788888888888
Q ss_pred hHHHHHHHHHHHHhcCCCC
Q 037612 594 IVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 594 ~~q~~Al~~L~~la~~~~~ 612 (663)
.+|..|+.+|.+++.+.+.
T Consensus 457 ~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 457 RVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 8999999999999765543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-10 Score=110.37 Aligned_cols=141 Identities=22% Similarity=0.222 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
++..|+.+|+++.. ..+++.|..+|++.++.++..++++|..+.. ...+
T Consensus 66 vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------------------~~~~ 114 (211)
T 3ltm_A 66 VRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAV 114 (211)
T ss_dssp HHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGH
T ss_pred HHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHH
Confidence 36677788877642 4578899999999999999999999987731 1256
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHc
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISA 578 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ 578 (663)
+.|++++.+.++.++..++.+||.+.. ...+++|+.+|++.++.|+..|+++|.++.. .
T Consensus 115 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~ 173 (211)
T 3ltm_A 115 EPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------E 173 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------H
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------h
Confidence 789999998899999999999999853 3589999999999999999999999999942 2
Q ss_pred CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 579 GGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 579 ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
..++.|..++..+++.++..|..+|+++..+.+
T Consensus 174 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 174 RVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 257789999999999899999999988854443
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=121.19 Aligned_cols=206 Identities=13% Similarity=0.097 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
++..++.+|..++..-.. .......++.|..+++..+++|+..++.+|..+....... .. ...++
T Consensus 340 vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~-----------~~~~l 404 (588)
T 1b3u_A 340 VKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-QL-----------SQSLL 404 (588)
T ss_dssp HHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-HH-----------HHHHH
T ss_pred HHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-HH-----------HHHHH
Confidence 467777777777642111 1123346778889999989999999999998886443211 11 13467
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhH--hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKAT--ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~--e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
+.|..++++.+..++..++.+|+.++..+... ...++|.++.+|.+.+..|++.|+.+|++++..- ..+ ..
T Consensus 405 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~---~~~----~~ 477 (588)
T 1b3u_A 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF---GKE----WA 477 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHH----HH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---Cch----hH
Confidence 77888888777788999999999998865542 1357899999999999999999999999997321 111 11
Q ss_pred HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHH
Q 037612 577 SAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLE 652 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le 652 (663)
-..-++.|+.++..++..++..++.++..++...+. +.....+++.|....+. .++.++.-+.+++..+-
T Consensus 478 ~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d----~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITTKHMLPTVLRMAGD----PVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHTHHHHHHGGGC----SCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhCCC----CCchHHHHHHHHHHHHH
Confidence 234677788888777776777799999888654332 12234566666522111 12356666666666654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-09 Score=105.64 Aligned_cols=136 Identities=23% Similarity=0.245 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
++..|+.+|+.+.. ..+++.|..+|.+.++.++..++++|.++.. ...+
T Consensus 61 vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~ 109 (201)
T 3ltj_A 61 VRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAV 109 (201)
T ss_dssp HHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGH
T ss_pred HHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHH
Confidence 35667778876542 3578899999999999999999999987631 1256
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHc
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISA 578 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ 578 (663)
+.|++++.+.++.++..++.+||.+.. ...++.|+.+|++.++.|+..|+++|+++.. .
T Consensus 110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------------~ 168 (201)
T 3ltj_A 110 EPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------E 168 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------H
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------h
Confidence 788899998889999999999999863 4689999999999999999999999999941 1
Q ss_pred CCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 579 GGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 579 ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
..++.|..++..+++.++..|..+|..+
T Consensus 169 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 169 RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2678899999999998888899999766
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.9e-08 Score=112.73 Aligned_cols=305 Identities=16% Similarity=0.145 Sum_probs=222.9
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcc
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPES 222 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~ 222 (663)
+...+..+..-|++ .+...|..|..+|+++.. ++ +. ...+|++.++|++.++.+++.|+.|+.+|.. +++.
T Consensus 105 ~~l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~ 176 (618)
T 1w63_A 105 HLLMTNCIKNDLNH-STQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL 176 (618)
T ss_dssp HHHHHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 34555667778899 999999999999999973 32 22 3578999999999999999999999999995 5543
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
.. +.++.+.++|.+.++.|+..|+++|..++..+++....+. ..+|.|+.+|..-
T Consensus 177 v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~------------------ 231 (618)
T 1w63_A 177 ME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNL------------------ 231 (618)
T ss_dssp GG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHH------------------
T ss_pred HH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHH------------------
Confidence 32 6888999999999999999999999999976655433332 5788888877521
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
+. ...+ .++..+|.
T Consensus 232 --~~--~~~~--------------------------------------------------------------~~~~~~~~ 245 (618)
T 1w63_A 232 --IM--SGYS--------------------------------------------------------------PEHDVSGI 245 (618)
T ss_dssp --HH--SCCC--------------------------------------------------------------TTTCSSSS
T ss_pred --Hc--CCCC--------------------------------------------------------------ccccccCC
Confidence 00 0000 00111111
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc------
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK------ 456 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~------ 456 (663)
.+|- ++....++|..++..++... ...+..|..+++.
T Consensus 246 ----------------------------~~~~----~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 246 ----------------------------SDPF----LQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKN 288 (618)
T ss_dssp ----------------------------SCHH----HHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSST
T ss_pred ----------------------------CCCh----HHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccc
Confidence 1332 46667888888887665432 2345566666642
Q ss_pred CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHH
Q 037612 457 GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV 536 (663)
Q Consensus 457 ~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~ 536 (663)
....+.+.|+.+++.+.. +++++. .+++.|.+++.+.+++++..+..+|+.++...+..=....+
T Consensus 289 ~~~aV~~ea~~~i~~l~~----~~~l~~-----------~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~ 353 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKS----ESGLRV-----------LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS 353 (618)
T ss_dssp HHHHHHHHHHHHHHHSCC----CHHHHH-----------HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred hHHHHHHHHHHHHHhcCC----CHHHHH-----------HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 234899999999988742 233332 35678999999999999999999999998765543335678
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 537 PLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 537 pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
.++.+|.+.+..+++.|...|.++++..| ...| ++.|...+...+...+..++.+++.++.+-
T Consensus 354 ~i~~~l~d~d~~Ir~~alelL~~l~~~~n------v~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 354 TIVDCLKDLDVSIKRRAMELSFALVNGNN------IRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHCCSSS------THHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHccCCChhHHHHHHHHHHHHccccc------HHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999986544 3344 367888887777778888999999998765
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-09 Score=125.12 Aligned_cols=303 Identities=15% Similarity=0.138 Sum_probs=196.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHH
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEH 225 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~ 225 (663)
.+..+...|+. .+...|..|..+|+++. +++... ..+|++.++|.+.++.+++.|+.||.++.. +++.
T Consensus 87 ~~n~l~kdL~~-~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~--- 155 (591)
T 2vgl_B 87 AVNSFVKDCED-PNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM--- 155 (591)
T ss_dssp THHHHGGGSSS-SSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---
Confidence 34445567788 89999999999999885 233232 347899999999899999999999999985 4442
Q ss_pred HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
+.+.+.++.|.++|.+.++.|+..|+++|..++..+++.+..-...+.++.|+..|...+ .|
T Consensus 156 ~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~-----~~------------- 217 (591)
T 2vgl_B 156 VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT-----EW------------- 217 (591)
T ss_dssp HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC-----HH-------------
T ss_pred cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC-----ch-------------
Confidence 334688999999999999999999999999999766532100001122344444443211 01
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
T Consensus 218 -------------------------------------------------------------------------------- 217 (591)
T 2vgl_B 218 -------------------------------------------------------------------------------- 217 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHH
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNS 465 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~a 465 (663)
.+....++|.+++..++.. ....+..+..+|++.++.|+++|
T Consensus 218 ---------------------------------~q~~il~~l~~l~~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ea 259 (591)
T 2vgl_B 218 ---------------------------------GQIFILDCLSNYNPKDDRE-----AQSICERVTPRLSHANSAVVLSA 259 (591)
T ss_dssp ---------------------------------HHHHHHHHHHTSCCCSHHH-----HHHHHHHHTTCSCSSTTHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHhCCCChHH-----HHHHHHHHHHHHcCCChHHHHHH
Confidence 0111122222222111111 12346677778888899999999
Q ss_pred HHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh----------------
Q 037612 466 AMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA---------------- 529 (663)
Q Consensus 466 a~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~---------------- 529 (663)
+++++++...-.++++..+. ....+...|+.++. .+++++..++.+|+.+....+.
T Consensus 260 ~~~i~~l~~~~~~~~~~~~~-------~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~ 331 (591)
T 2vgl_B 260 VKVLMKFLELLPKDSDYYNM-------LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDP 331 (591)
T ss_dssp HHHHHHSCCSCCBTTBSHHH-------HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSC
T ss_pred HHHHHHHhhccCCCHHHHHH-------HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCCh
Confidence 99999875321112221110 11234556666654 6788999999999888752110
Q ss_pred ----H-----------h---hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC
Q 037612 530 ----T-----------E---TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG 591 (663)
Q Consensus 530 ----~-----------e---~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~ 591 (663)
. + ..+++.|...+.+.+.++++++++++++++..- +... ...++.|++++...
T Consensus 332 ~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~----~~~~-----~~~v~~Ll~ll~~~ 402 (591)
T 2vgl_B 332 IYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV----EQSA-----ERCVSTLLDLIQTK 402 (591)
T ss_dssp HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC----HHHH-----HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC----hhHH-----HHHHHHHHHHHccc
Confidence 0 0 124666667777889999999999999997431 2222 23568999999887
Q ss_pred ChhHHHHHHHHHHHHhcCCCCh
Q 037612 592 EQIVQLSALVLLCYIALHVPDS 613 (663)
Q Consensus 592 ~~~~q~~Al~~L~~la~~~~~~ 613 (663)
...+...++..+..+..+.++.
T Consensus 403 ~~~v~~e~i~~l~~ii~~~p~~ 424 (591)
T 2vgl_B 403 VNYVVQEAIVVIRDIFRKYPNK 424 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSS
T ss_pred chHHHHHHHHHHHHHHHHCcch
Confidence 6666666888898887766653
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=120.79 Aligned_cols=315 Identities=14% Similarity=0.071 Sum_probs=209.2
Q ss_pred hHhHHH-HHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-Cc
Q 037612 144 ILCLIW-EQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PE 221 (663)
Q Consensus 144 i~~~v~-~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~ 221 (663)
.+..++ .++..|.. .+...|..++.++..+++.+... . -.+.+|.|++++.++++..++.|..+|+.++.+ ++
T Consensus 87 ~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~~-~---wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGELQ-N---WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTTT-T---CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCcc-c---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 334443 34556777 88899999999999998753210 0 135699999999999999999999999999953 22
Q ss_pred chHH-H---HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhh
Q 037612 222 SVEH-M---IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSK 297 (663)
Q Consensus 222 ~~~~-i---v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~ 297 (663)
.-.. . .-...+|.|++++++.+++++..|+++|.++....++..... -...++.|+.++..
T Consensus 162 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~~d-------------- 226 (852)
T 4fdd_A 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALAGD-------------- 226 (852)
T ss_dssp HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHHTC--------------
T ss_pred HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcCC--------------
Confidence 1110 0 013478889999999999999999999988775432110000 00111111111110
Q ss_pred hhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccc
Q 037612 298 ATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDV 377 (663)
Q Consensus 298 ~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~ 377 (663)
T Consensus 227 -------------------------------------------------------------------------------- 226 (852)
T 4fdd_A 227 -------------------------------------------------------------------------------- 226 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC
Q 037612 378 KSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG 457 (663)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~ 457 (663)
+|+ .++..|+.+|..++...+..-....+ +.+..+..++.+.
T Consensus 227 ---------------------------------~~~----~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~ 268 (852)
T 4fdd_A 227 ---------------------------------EEP----EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQ 268 (852)
T ss_dssp ---------------------------------CCH----HHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCS
T ss_pred ---------------------------------CCH----HHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCC
Confidence 122 34778888898888765544332222 3566777888888
Q ss_pred ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh-----------hh--c---------CcchhhH
Q 037612 458 PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII-----------EK--A---------DSDLLIP 515 (663)
Q Consensus 458 ~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll-----------~~--~---------~~~l~~~ 515 (663)
+++++..|+..+..++.... .++ .++ |....+++.|+..+ .+ . +-.+...
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~----~~~-~~~---~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~ 340 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPI----CKD-VLV---RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKC 340 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTT----HHH-HHT---TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHH
T ss_pred cHHHHHHHHHHHHHHhcchh----HHH-HHH---HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHH
Confidence 89999999999988764321 122 122 34456677777766 22 1 1135778
Q ss_pred HHHHHHHhhhchhhH-hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChh
Q 037612 516 CIKAVGNLARTFKAT-ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594 (663)
Q Consensus 516 a~~aLg~La~~~~~~-e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~ 594 (663)
++.+|+.|+..+... -..++|.|..+|++.+..++..|+++|++++.+. .+.... .-.+.++.|+.++..+++.
T Consensus 341 a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~----~~~~~~-~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 341 SAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC----MQGMIP-YLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT----HHHHGG-GHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc----hHHHHH-HHHHHHHHHHHHcCCCCHH
Confidence 999999999877632 1246777777888899999999999999998542 222221 1245688999999999988
Q ss_pred HHHHHHHHHHHHhcC
Q 037612 595 VQLSALVLLCYIALH 609 (663)
Q Consensus 595 ~q~~Al~~L~~la~~ 609 (663)
++..|+++|.+++..
T Consensus 416 Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 416 VRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888899999988753
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.99 E-value=9.4e-09 Score=119.33 Aligned_cols=221 Identities=13% Similarity=0.145 Sum_probs=155.3
Q ss_pred hcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHH-HhhccCChhHHHHHHHHHHHHhcC-ChhH
Q 037612 187 EEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFA-KILKEGPMKVQAVVAWAVSELAGN-YPKC 264 (663)
Q Consensus 187 e~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv-~lL~s~~~~vq~~Aa~aL~nLA~~-~~~~ 264 (663)
....|.||++.|+++++..|..|++||.||+.+++.++.+...|+|++++ .+|.+.+.+|+..|+++|.||+.. +++.
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 34578899999999999999999999999999999999999999998765 568888999999999999999964 5788
Q ss_pred HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCC
Q 037612 265 QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTP 344 (663)
Q Consensus 265 r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 344 (663)
...+.+.|++++|..+|+... . ++.+ ... .. .
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~---~----------~~~~----~~~---------~~-----~----------------- 143 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVL---E----------TLTT----SEP---------PF-----S----------------- 143 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHH---H----------HHHC----BTT---------BG-----G-----------------
T ss_pred HHHHHHcChHHHHHHHHHhhH---H----------HHhh----hcc---------cc-----c-----------------
Confidence 899999999999999997421 0 0000 000 00 0
Q ss_pred ccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHH
Q 037612 345 SQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAA 424 (663)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa 424 (663)
.+.. +...........+.
T Consensus 144 -~~~~-------------------------------------------------------------~~~~~~~~~~~~~l 161 (684)
T 4gmo_A 144 -KLLK-------------------------------------------------------------AQQRLVWDITGSLL 161 (684)
T ss_dssp -GSCH-------------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred -cccH-------------------------------------------------------------HHHHHHHHHHHHHH
Confidence 0000 00000012345577
Q ss_pred HHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC---ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHH
Q 037612 425 RALWHLAKGNSPICRSITESRALLCFAVLLEKG---PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQL 501 (663)
Q Consensus 425 ~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~---~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL 501 (663)
.+||+||.++......|...++++.|+.+|... ..+++..++.+|+.++. +|+++.+. +..+ +. ..+...+
T Consensus 162 ~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~---dn~~~~~~-i~~~-~~-~~~~~~l 235 (684)
T 4gmo_A 162 VLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSE---DNLKVGQA-ITDD-QE-THVYDVL 235 (684)
T ss_dssp HHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHT---TCHHHHHH-HHTC-CS-SCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhc---cCHHHHHH-HHhc-ch-HHHHHHH
Confidence 899999999999999999999999999998643 35899999999998864 45555543 2221 10 0122233
Q ss_pred HHHhhhcCcchhhHHHHHHHHhh
Q 037612 502 FRIIEKADSDLLIPCIKAVGNLA 524 (663)
Q Consensus 502 ~~ll~~~~~~l~~~a~~aLg~La 524 (663)
+. +.+.++..+..++..|.|+.
T Consensus 236 l~-~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 236 LK-LATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HH-HHHSSCTTHHHHHHHHHHHH
T ss_pred HH-HhcCCcHHHHHHHHHHHhHh
Confidence 33 33444555666777777764
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-09 Score=124.30 Aligned_cols=129 Identities=14% Similarity=0.173 Sum_probs=107.3
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-hhccCChHHHHHHHHHHHHhcC--CCcchHHHHH
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLK-LVKEGKPEGQENAARAIGLLGR--DPESVEHMIH 228 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~-LL~sg~~~~q~~Aa~AL~nLs~--~~~~~~~iv~ 228 (663)
+..|++ ++.+.|..|+++|.+|+. ++.+++.+..+|+|++++. +|...+..+++.|++||.||+. .++.+..+++
T Consensus 40 l~~L~S-~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~ 117 (684)
T 4gmo_A 40 LKDLKS-PDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYR 117 (684)
T ss_dssp HHHHSS-SCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHcCC-CCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHH
Confidence 667899 999999999999999996 5889999999999998765 6766789999999999999995 4677899999
Q ss_pred cCchHHHHHhhccCC---------------------hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc
Q 037612 229 SGVCLVFAKILKEGP---------------------MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 229 aGaIp~Lv~lL~s~~---------------------~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~ 282 (663)
.|++++|..+|++.. .++..++..+|.+|+..+.+....+...+.|+.|+.+|.
T Consensus 118 ~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 118 LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 999999999996421 123445677888888777777778888888888888773
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-07 Score=107.25 Aligned_cols=332 Identities=12% Similarity=0.110 Sum_probs=219.0
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cc
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ES 222 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~ 222 (663)
+..++..+...|.. .+...|..|+.+|..+...+++. + .+.++.|..+|...++.++..|+++|..++... +.
T Consensus 140 ~~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~----v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 140 CRDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPEL----M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGG----G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHH----H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 34456667778888 99999999999999998765542 2 268899999999888999999999999999643 22
Q ss_pred hHHHHHcCchHHHHHhhcc---------------CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccc
Q 037612 223 VEHMIHSGVCLVFAKILKE---------------GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQ 287 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s---------------~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~ 287 (663)
...+ ...+|.|+++|++ .++-.|.....+|..++..+++... ..++.|-.++......
T Consensus 214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETS 286 (618)
T ss_dssp HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCS
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccc
Confidence 2222 2678999998864 3688899999999999977665432 3456666665422111
Q ss_pred hhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCccccc
Q 037612 288 EHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQ 367 (663)
Q Consensus 288 ~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 367 (663)
.|...++.. .+++++...... ..+...+. .
T Consensus 287 ~~~~~aV~~--ea~~~i~~l~~~-------------------------------------~~l~~~a~--~--------- 316 (618)
T 1w63_A 287 KNVGNAILY--ETVLTIMDIKSE-------------------------------------SGLRVLAI--N--------- 316 (618)
T ss_dssp STHHHHHHH--HHHHHHHHSCCC-------------------------------------HHHHHHHH--H---------
T ss_pred cchHHHHHH--HHHHHHHhcCCC-------------------------------------HHHHHHHH--H---------
Confidence 122222210 011211110000 00000000 0
Q ss_pred ccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccH
Q 037612 368 GNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRAL 447 (663)
Q Consensus 368 ~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal 447 (663)
.+..++. ..|+. +|..|..+|..++..++.. + ....
T Consensus 317 -------------------------~L~~~L~----------~~d~~----vr~~aL~~L~~i~~~~p~~---~--~~~~ 352 (618)
T 1w63_A 317 -------------------------ILGRFLL----------NNDKN----IRYVALTSLLKTVQTDHNA---V--QRHR 352 (618)
T ss_dssp -------------------------HHHHHHT----------CSSTT----THHHHHHHHHHHHHHHHHH---H--GGGH
T ss_pred -------------------------HHHHHHh----------CCCCc----hHHHHHHHHHHHHhhCHHH---H--HHHH
Confidence 0111111 13454 4888999999888754322 1 2244
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhch
Q 037612 448 LCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTF 527 (663)
Q Consensus 448 ~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~ 527 (663)
..+...|...+.+++..+...|..++. ++| ...+++.|+..+.+.+++++..++.+||.+|..|
T Consensus 353 ~~i~~~l~d~d~~Ir~~alelL~~l~~--~~n--------------v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 353 STIVDCLKDLDVSIKRRAMELSFALVN--GNN--------------IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHCC--SSS--------------THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHcc--ccc--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 567777888899999999999988853 222 1346788999999989999999999999999988
Q ss_pred hhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC---ChhHHHHHHHHHH
Q 037612 528 KATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG---EQIVQLSALVLLC 604 (663)
Q Consensus 528 ~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~---~~~~q~~Al~~L~ 604 (663)
...-...|+.|+++|+.....+..++..++..+.... ++.... .++.|+.++... ++..+ .++|+|+
T Consensus 417 ~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~----p~l~~~-----~v~~L~~~l~~~~~~~~~~~-~~~wilG 486 (618)
T 1w63_A 417 APSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS----VEMHAY-----TVQRLYKAILGDYSQQPLVQ-VAAWCIG 486 (618)
T ss_dssp CCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS----CSTHHH-----HHHHHHHHHHHCCSCSHHHH-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC----hhHHHH-----HHHHHHHHHhcccccHHHHH-HHHHHHh
Confidence 6544568999999998887778888888888876432 222233 356789888852 44334 4788887
Q ss_pred HHhc
Q 037612 605 YIAL 608 (663)
Q Consensus 605 ~la~ 608 (663)
-.+.
T Consensus 487 Ey~~ 490 (618)
T 1w63_A 487 EYGD 490 (618)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6653
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.5e-08 Score=104.32 Aligned_cols=316 Identities=12% Similarity=0.055 Sum_probs=197.5
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCC--CcchHHH
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRD--PESVEHM 226 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~--~~~~~~i 226 (663)
++..|.. .+... ..++.+|..++........ -.+.+|.|+..+.++ ++..++.|..+|..|+.+ ++.-...
T Consensus 95 ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 169 (462)
T 1ibr_B 95 VLQTLGT-ETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK 169 (462)
T ss_dssp HHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG
T ss_pred HHHHhCC-CCchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH
Confidence 5666777 66666 7788889888865211000 136799999999998 889999999999999952 2211111
Q ss_pred HHcCchHHHHHhhccC--ChhHHHHHHHHHHHHhcCChhHHHHHHhC----CcHHHHHHHhccCccchhhhHHHhhhhhh
Q 037612 227 IHSGVCLVFAKILKEG--PMKVQAVVAWAVSELAGNYPKCQDLFAQH----NIIRLLVGHLAFETVQEHSKYAIVSKATS 300 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~--~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~----g~I~~LV~LL~sgt~~~~s~~~v~~~~~s 300 (663)
+ ...++.|++.|++. ++.++..|++++.++...-. ..+... -.++.|..++.+
T Consensus 170 ~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~----------------- 228 (462)
T 1ibr_B 170 S-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK---ANFDKESERHFIMQVVCEATQC----------------- 228 (462)
T ss_dssp H-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH---HHHTSHHHHHHHHHHHHHHTTC-----------------
T ss_pred H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhcCC-----------------
Confidence 1 24788899999887 78999999999999864211 000000 001111111000
Q ss_pred HHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccccc
Q 037612 301 IHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSN 380 (663)
Q Consensus 301 l~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~ 380 (663)
T Consensus 229 -------------------------------------------------------------------------------- 228 (462)
T 1ibr_B 229 -------------------------------------------------------------------------------- 228 (462)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChh
Q 037612 381 GQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPED 460 (663)
Q Consensus 381 g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~ 460 (663)
+|+ .++..++++|..++...+..-........++.+...++..+++
T Consensus 229 ------------------------------~~~----~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 274 (462)
T 1ibr_B 229 ------------------------------PDT----RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274 (462)
T ss_dssp ------------------------------SSH----HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHH
T ss_pred ------------------------------CCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 122 2466677777777754332211111114455666677788899
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHh-----------hhcCCCCchhHhHHHHHHHHhhhcC-------cchhhHHHHHHHH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRR-----------SAFKPNAPACKAVVDQLFRIIEKAD-------SDLLIPCIKAVGN 522 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr-----------~a~~~~~~a~~~vv~qL~~ll~~~~-------~~l~~~a~~aLg~ 522 (663)
++..+...+..++....+..+... ..++.-.+....+++.|++.+...+ ..+...++.+|+.
T Consensus 275 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~ 354 (462)
T 1ibr_B 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 999999998888644210000000 0000001122456677777775432 3577889999999
Q ss_pred hhhchhhH-hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 037612 523 LARTFKAT-ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALV 601 (663)
Q Consensus 523 La~~~~~~-e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 601 (663)
|+..+... -..++|.+...|++.+..++..|..+|+.++.+.. .+...... ...+++|+.+|..+++.++..|++
T Consensus 355 l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~ 430 (462)
T 1ibr_B 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAW 430 (462)
T ss_dssp HHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99887631 12356777778889999999999999999985421 11111111 457889999999999989999999
Q ss_pred HHHHHhcCC
Q 037612 602 LLCYIALHV 610 (663)
Q Consensus 602 ~L~~la~~~ 610 (663)
+|+.++...
T Consensus 431 ~l~~~~~~~ 439 (462)
T 1ibr_B 431 TVGRICELL 439 (462)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHhc
Confidence 999986443
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.4e-07 Score=105.93 Aligned_cols=316 Identities=16% Similarity=0.160 Sum_probs=199.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch--
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV-- 223 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~-- 223 (663)
++..+...|+. .+...|..|+.+|+.++.... ..-...+ ...+|.|++.++..++.++..++++|+.++..-...
T Consensus 370 l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 34445567778 889999999999999996532 2112222 247899999999888999999999999999531100
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh-----HHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhh
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK-----CQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKA 298 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~-----~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~ 298 (663)
..-.-...+|.|++.|++. +.++..++++|.+++....+ ....+ ...++.|+.++....
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d------------- 511 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRID------------- 511 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSC-------------
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcC-------------
Confidence 0001234688899999876 89999999999999853110 00000 011222222221100
Q ss_pred hhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccc
Q 037612 299 TSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVK 378 (663)
Q Consensus 299 ~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~ 378 (663)
T Consensus 512 -------------------------------------------------------------------------------- 511 (861)
T 2bpt_A 512 -------------------------------------------------------------------------------- 511 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-
Q 037612 379 SNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG- 457 (663)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~- 457 (663)
.++ .++..|..+|..++......+..... ..++.+...|...
T Consensus 512 --------------------------------~~~----~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~ 554 (861)
T 2bpt_A 512 --------------------------------NEF----NARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTM 554 (861)
T ss_dssp --------------------------------CGG----GHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHT
T ss_pred --------------------------------cch----HHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHH
Confidence 001 13556667777766644433322222 2344455444421
Q ss_pred --------------ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCc-chhhHHHHHHHH
Q 037612 458 --------------PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADS-DLLIPCIKAVGN 522 (663)
Q Consensus 458 --------------~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~-~l~~~a~~aLg~ 522 (663)
..+++..++.+|..|....+. + |. |....+++.++.+++..+. .++..++.+++.
T Consensus 555 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~-----~~---~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 555 SVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--S-----VE---PVADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--G-----TG---GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--h-----hH---HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHH
Confidence 346788899999988755432 1 11 3445677888888888766 889999999999
Q ss_pred hhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCC--hhHH
Q 037612 523 LARTFKAT----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGE--QIVQ 596 (663)
Q Consensus 523 La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~--~~~q 596 (663)
++..+... -..++|.|+..|+..+++++..|..+++.++..- .++..-. -..-++.|+..+..++ +.++
T Consensus 625 l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~----~~~~~~~-~~~l~~~l~~~l~~~~~~~~vr 699 (861)
T 2bpt_A 625 LAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL----EEDFRRY-SDAMMNVLAQMISNPNARRELK 699 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT----GGGGHHH-HHHHHHHHHHHHHCTTCCTTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----chhccch-HHHHHHHHHHHhCCccccHhhh
Confidence 98765431 1357999999998888999999999998886321 1111111 1234566777777653 5577
Q ss_pred HHHHHHHHHHhcCCCC
Q 037612 597 LSALVLLCYIALHVPD 612 (663)
Q Consensus 597 ~~Al~~L~~la~~~~~ 612 (663)
..++.++..++.+.++
T Consensus 700 ~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 700 PAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhh
Confidence 7899999888876554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-07 Score=99.04 Aligned_cols=289 Identities=10% Similarity=0.039 Sum_probs=170.3
Q ss_pred HHHHHHHHhccCC--CHHHHHHHHHHHHHhhcCC-hhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCCCc
Q 037612 147 LIWEQVAILYTAG--SLEHKSDAAASLVSLARDN-DRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRDPE 221 (663)
Q Consensus 147 ~v~~li~~L~~~G--~~e~k~~AA~~L~~La~~~-~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~~~ 221 (663)
++-.++..++. + +...|..|..+|..++... ...-.... ...++.|+.+|+.. ++.++..|++++.++...-+
T Consensus 129 ll~~L~~~l~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 129 LIPQLVANVTN-PNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45667888888 8 8999999999999998642 11111111 23688899999887 68999999999999764321
Q ss_pred -ch-HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhH-HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhh
Q 037612 222 -SV-EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKC-QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKA 298 (663)
Q Consensus 222 -~~-~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~-r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~ 298 (663)
+- ......-.++.|.+.+.+++++++..++++|..++...++. +..+ ..+.++.++..++... +.-+... .
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~--~~v~~~a---~ 280 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDI--DEVALQG---I 280 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSS--HHHHHHH---H
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCc--hHHHHHH---H
Confidence 11 01111124677777788888999999999999999754332 1111 1155666666554321 0000000 0
Q ss_pred hhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccc
Q 037612 299 TSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVK 378 (663)
Q Consensus 299 ~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~ 378 (663)
..+..+..... ...-.. + +..
T Consensus 281 ~~l~~~~~~~~-------------------------------------------~~~~~~--------------~--~~~ 301 (462)
T 1ibr_B 281 EFWSNVCDEEM-------------------------------------------DLAIEA--------------S--EAA 301 (462)
T ss_dssp HHHHHHHHHHH-------------------------------------------HHHHHH--------------C--CTT
T ss_pred HHHHHHHHHHH-------------------------------------------HHHHhc--------------c--ccc
Confidence 01111110000 000000 0 000
Q ss_pred ccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-
Q 037612 379 SNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG- 457 (663)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~- 457 (663)
.++. +..+.... . .+. . -...++.+...+...
T Consensus 302 ~~~~----------------------~~~~~~~~-~----~~~----~----------------~~~l~p~l~~~l~~~d 334 (462)
T 1ibr_B 302 EQGR----------------------PPEHTSKF-Y----AKG----A----------------LQYLVPILTQTLTKQD 334 (462)
T ss_dssp CSSS----------------------CSSCCCCC-H----HHH----H----------------HHHHHHHHHHHTTCCC
T ss_pred ccCC----------------------CccchhHH-H----HHH----H----------------hhhccHHHHHHHHhcc
Confidence 0000 00000000 0 000 0 012344455555432
Q ss_pred ------ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh--
Q 037612 458 ------PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-- 529 (663)
Q Consensus 458 ------~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-- 529 (663)
+..++..|+.+|..++..-.. .....+++.+...+.+.+..++..++.+||+++.....
T Consensus 335 ~d~~~~~~~~r~~a~~~L~~l~~~~~~-------------~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~ 401 (462)
T 1ibr_B 335 ENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (462)
T ss_dssp SSCCTTCCSHHHHHHHHHHHHHHHTTT-------------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred cccccccchHHHHHHHHHHHHHHhccH-------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH
Confidence 347899999999988754321 11234666777788877888999999999999975431
Q ss_pred ---HhhccHHHHHHhcccCCHHHHHHHHHHHHhccc
Q 037612 530 ---TETRMIVPLVKLLDEREAEVSREASIALTKFAC 562 (663)
Q Consensus 530 ---~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~ 562 (663)
.-..++|+|+.+|.+.++.|+..|+|+|++++.
T Consensus 402 ~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 114589999999999999999999999999973
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-06 Score=97.23 Aligned_cols=330 Identities=11% Similarity=0.050 Sum_probs=193.3
Q ss_pred HHHHHHHHhccCC--CHHHHHHHHHHHHHhhcCChhhHHHHH--hcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCC-
Q 037612 147 LIWEQVAILYTAG--SLEHKSDAAASLVSLARDNDRYGKLII--EEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRD- 219 (663)
Q Consensus 147 ~v~~li~~L~~~G--~~e~k~~AA~~L~~La~~~~~~~~~Iv--e~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~- 219 (663)
++..++..+.. + +...|..|..+|..++..-.. ..+. -...++.|+.+|..+ +...+..|..+|.++...
T Consensus 129 ll~~l~~~l~~-~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 129 LIPQLVANVTN-PNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556778888 8 889999999999999854211 1111 124577888888876 578999999999998853
Q ss_pred Ccc-hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhh
Q 037612 220 PES-VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKA 298 (663)
Q Consensus 220 ~~~-~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~ 298 (663)
..+ .........++.+.+.+.+.+++++..+..+|..++...+..-........++.++..+.... +.-+... .
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~v~~~a---l 280 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQG---I 280 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS--HHHHHHH---H
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHH---H
Confidence 111 111111236777888888888999999999999999754433222223356666666554321 0000000 0
Q ss_pred hhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccc
Q 037612 299 TSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVK 378 (663)
Q Consensus 299 ~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~ 378 (663)
..+..+....... ....... .
T Consensus 281 ~~l~~l~~~~~~~--------------------------------------~~~~~~~---------------------~ 301 (876)
T 1qgr_A 281 EFWSNVCDEEMDL--------------------------------------AIEASEA---------------------A 301 (876)
T ss_dssp HHHHHHHHHHHHH--------------------------------------HHHHHHH---------------------H
T ss_pred HHHHHHHHHHHhH--------------------------------------hhhhccc---------------------c
Confidence 0111111000000 0000000 0
Q ss_pred ccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc--
Q 037612 379 SNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-- 456 (663)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-- 456 (663)
.++. .|. + .... ..+. .+ ...++.+..+|..
T Consensus 302 ~~~~---------~~~-------------~--~~~~---~~~~----~~----------------~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 302 EQGR---------PPE-------------H--TSKF---YAKG----AL----------------QYLVPILTQTLTKQD 334 (876)
T ss_dssp HHSS---------CCS-------------S--CCCC---HHHH----HH----------------HHHHHHHHHHTTCCC
T ss_pred ccCC---------Ccc-------------c--hhHH---HHHH----HH----------------HHHhHHHHHHhhccc
Confidence 0000 000 0 0000 0000 00 1124455555542
Q ss_pred -----CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchh-h-
Q 037612 457 -----GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK-A- 529 (663)
Q Consensus 457 -----~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~-~- 529 (663)
.+..++..++.+|..++..... .....+++.+...+.+.+..++..++.++|.++.... .
T Consensus 335 ~d~~~~~~~~r~~a~~~l~~l~~~~~~-------------~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 335 ENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCcH-------------hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 2347899999999888644321 1123456666677777778899999999999997654 1
Q ss_pred ---HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCC-CC-ChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 037612 530 ---TETRMIVPLVKLLDEREAEVSREASIALTKFACSDN-YL-HSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLC 604 (663)
Q Consensus 530 ---~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~-~~-~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 604 (663)
.-..++|.|+..|++.++.|+..|+|+|++++..-. +. ...+.. ..++.|+..|... +.++..|+.+|.
T Consensus 402 ~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~-----~~l~~l~~~l~~~-~~v~~~a~~al~ 475 (876)
T 1qgr_A 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA-----PLLQCLIEGLSAE-PRVASNVCWAFS 475 (876)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH-----HHHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH-----HHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 123579999999999999999999999999974311 00 011222 2456777878764 668888999999
Q ss_pred HHhcC
Q 037612 605 YIALH 609 (663)
Q Consensus 605 ~la~~ 609 (663)
+++..
T Consensus 476 ~l~~~ 480 (876)
T 1qgr_A 476 SLAEA 480 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88744
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-05 Score=94.07 Aligned_cols=334 Identities=12% Similarity=0.154 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCc--chHHHHHcCchHHHHHh
Q 037612 161 LEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE--SVEHMIHSGVCLVFAKI 238 (663)
Q Consensus 161 ~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~--~~~~iv~aGaIp~Lv~l 238 (663)
...|..|+.+|..++.... ..++ ...+|.+...|.+.+...++.|+++|+.++.... .-...+. ..+|.|++.
T Consensus 345 ~~~r~~a~~~L~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~ 419 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNL 419 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHH
Confidence 3578888899999886422 1111 1345666667777788999999999999996432 2222222 478999999
Q ss_pred hccCChhHHHHHHHHHHHHhcCChhHHHHHHhCC----cHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCcc
Q 037612 239 LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHN----IIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNA 314 (663)
Q Consensus 239 L~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g----~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~ 314 (663)
++++++.++..++|+|++++..-+. .+.... .+|.|+..|..
T Consensus 420 l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~~l~~l~~~l~~------------------------------- 465 (861)
T 2bpt_A 420 MNDQSLQVKETTAWCIGRIADSVAE---SIDPQQHLPGVVQACLIGLQD------------------------------- 465 (861)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHGG---GSCTTTTHHHHHHHHHHHHTS-------------------------------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhh---hcCCHHHHHHHHHHHHHHhcc-------------------------------
Confidence 9999999999999999999852110 000011 12222222211
Q ss_pred ccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccc
Q 037612 315 NANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQH 394 (663)
Q Consensus 315 ~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~ 394 (663)
T Consensus 466 -------------------------------------------------------------------------------- 465 (861)
T 2bpt_A 466 -------------------------------------------------------------------------------- 465 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCCh-----hhhHHHhhhccHHHHHHHhhcCC--hhHHHHHHH
Q 037612 395 QHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNS-----PICRSITESRALLCFAVLLEKGP--EDVQYNSAM 467 (663)
Q Consensus 395 ~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~-----~~~~~I~esgal~~L~~LL~~~~--~~vq~~aa~ 467 (663)
++ .++..|+.+|.+++.+.. .....+ ...++.|.+++++.+ .+++..++.
T Consensus 466 -----------------~~----~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 466 -----------------HP----KVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp -----------------CH----HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred -----------------Ch----HHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 11 235667777777765311 111111 234567778887544 689999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc---------------CcchhhHHHHHHHHhhhchhhH--
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA---------------DSDLLIPCIKAVGNLARTFKAT-- 530 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~---------------~~~l~~~a~~aLg~La~~~~~~-- 530 (663)
+|..+....... .. +....+++.++..+... ..+++..++.+|+.+.+.+...
T Consensus 523 al~~l~~~~~~~--~~--------~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 523 ALTTMVEYATDT--VA--------ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp HHHHHHHHCCGG--GH--------HHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred HHHHHHHHcchh--hH--------HHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 999987554321 11 12234555566655532 2446778889999988765541
Q ss_pred --hhccHHHHHHhcccCCH-HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 531 --ETRMIVPLVKLLDEREA-EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 531 --e~~~I~pLV~LL~~~~~-~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
-..+++.++.+|+..+. .+++++..+++.++..-. .+-..++- .-++.|+..+...++.++..|+.++..++
T Consensus 593 ~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~---~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 593 PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG---KGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHG---GGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHh---hhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 12467888888887776 899999999998873210 11112222 25678888887777777778999998887
Q ss_pred cCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHh
Q 037612 608 LHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLEL 653 (663)
Q Consensus 608 ~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~ 653 (663)
...++.-.-.-..+++.+....... ..++.++.-+..++..+-.
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNP--NARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCT--TCCTTHHHHHHHHHHHHHH
T ss_pred HHhchhccchHHHHHHHHHHHhCCc--cccHhhhHHHHHHHHHHHH
Confidence 6655321101123344332111110 0124566666666655543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.52 E-value=7.6e-06 Score=95.64 Aligned_cols=316 Identities=14% Similarity=0.104 Sum_probs=190.8
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcc----
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPES---- 222 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~---- 222 (663)
+..+...|+. .+...|..|+.+|+.++.... ....... ...+|.|+.+|++.++.++..|+++|.+++.....
T Consensus 368 l~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 368 LPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHccC-CChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 3444567778 889999999999999987543 2122222 34799999999988899999999999999953211
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHH-----------HHHHh--CCcHHHHHHHhccCccchh
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQ-----------DLFAQ--HNIIRLLVGHLAFETVQEH 289 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r-----------~~i~~--~g~I~~LV~LL~sgt~~~~ 289 (663)
... -...++.|++.|.+. +.++..++++|.+++....+.. ..+.. ...+|.|+.++....
T Consensus 446 ~~~--l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~---- 518 (876)
T 1qgr_A 446 DVY--LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD---- 518 (876)
T ss_dssp TTT--HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS----
T ss_pred HHH--HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC----
Confidence 111 134678888888875 8999999999999985311000 00000 001111111111000
Q ss_pred hhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCccccccc
Q 037612 290 SKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGN 369 (663)
Q Consensus 290 s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 369 (663)
T Consensus 519 -------------------------------------------------------------------------------- 518 (876)
T 1qgr_A 519 -------------------------------------------------------------------------------- 518 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHH
Q 037612 370 VINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLC 449 (663)
Q Consensus 370 ~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~ 449 (663)
.++. .++..+..+|..++......+.... ...++.
T Consensus 519 ----------------------------------------~~~~----~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ 553 (876)
T 1qgr_A 519 ----------------------------------------GHQN----NLRSSAYESLMEIVKNSAKDCYPAV-QKTTLV 553 (876)
T ss_dssp ----------------------------------------SCST----THHHHHHHHHHHHHHTCCSTTHHHH-HHHHHH
T ss_pred ----------------------------------------cchh----hHHHHHHHHHHHHHHHCchhhHHHH-HHHHHH
Confidence 0011 1345566666666654333222211 222334
Q ss_pred HHHHhhc---------CC------hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC--cch
Q 037612 450 FAVLLEK---------GP------EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD--SDL 512 (663)
Q Consensus 450 L~~LL~~---------~~------~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~--~~l 512 (663)
+...+.. ++ ++++..++.++..++..-+. .++ . |....+++.|+.++++.+ ..+
T Consensus 554 l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~-----~---~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDA-----L---QISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHH-----H---TTHHHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhh-----h---HHHHHHHHHHHHHHHhccCCCCc
Confidence 4443332 11 35677888888887644320 122 1 334567888888888764 368
Q ss_pred hhHHHHHHHHhhhchhhH----hhccHHHHHHhcccC-CHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHH
Q 037612 513 LIPCIKAVGNLARTFKAT----ETRMIVPLVKLLDER-EAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587 (663)
Q Consensus 513 ~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~~~-~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~L 587 (663)
+..++.++++++..+... -..++|.|+..|.+. ++.++..|.++|+.++..- .++..... ..-++.|+..
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~----~~~~~~~~-~~i~~~l~~~ 699 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL----QSNIIPFC-DEVMQLLLEN 699 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH----GGGGHHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH----HHhhhhhH-HHHHHHHHHH
Confidence 889999999998754331 134789999999887 8999999999999986321 01111111 2455677777
Q ss_pred HhcC--ChhHHHHHHHHHHHHhcCCC
Q 037612 588 VYFG--EQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 588 L~~~--~~~~q~~Al~~L~~la~~~~ 611 (663)
+..+ +..++..++.+++.++...+
T Consensus 700 l~~~~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 700 LGNENVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred hCCccccHHhhHHHHHHHHHHHHHhc
Confidence 8763 44577789999998875444
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.25 E-value=8.6e-08 Score=87.25 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=89.1
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHh
Q 037612 444 SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523 (663)
Q Consensus 444 sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~L 523 (663)
...++.|..+|++.++.++..|+++|.++. .+ .++.|++++++.++.++..++.+||.+
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~-----------------~~----~~~~L~~~L~d~~~~vR~~A~~aL~~~ 69 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG-----------------DE----AFEPLLESLSNEDWRIRGAAAWIIGNF 69 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS-----------------ST----THHHHHHGGGCSCHHHHHHHHHHHGGG
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------------ch----HHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 345678888999999999999998875441 01 147888999988899999999999988
Q ss_pred hhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 524 ARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 524 a~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
.. ...+++|+.+|++.++.|+.+|+++|+++.. ..+++.|+.+|..+++.++..|+.+|
T Consensus 70 ~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 70 QD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp CS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred CC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 63 3469999999999999999999999999851 12578999999888887888888877
Q ss_pred H
Q 037612 604 C 604 (663)
Q Consensus 604 ~ 604 (663)
.
T Consensus 129 ~ 129 (131)
T 1te4_A 129 E 129 (131)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00013 Score=83.74 Aligned_cols=304 Identities=14% Similarity=0.161 Sum_probs=189.6
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh--ccCChHHHHHHHHHHHHhcC-CC
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLV--KEGKPEGQENAARAIGLLGR-DP 220 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL--~sg~~~~q~~Aa~AL~nLs~-~~ 220 (663)
+...+..+..-|++ .+.-.|..|..+|+++.. ++ +. ...+|++.++| .+.++-+++.|+.|+..+.. ++
T Consensus 109 ~~L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p 180 (621)
T 2vgl_A 109 IRLINNAIKNDLAS-RNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP 180 (621)
T ss_dssp HHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh
Confidence 44445566667888 899999999999999853 33 22 35689999999 77789999999999999996 44
Q ss_pred cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhh
Q 037612 221 ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATS 300 (663)
Q Consensus 221 ~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~s 300 (663)
+.. -..+.++.|.++|.+.++.|+..|..++..++..+++. -...+|.++..|..
T Consensus 181 ~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-----~~~~~~~~~~~L~~----------------- 235 (621)
T 2vgl_A 181 DLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE-----FKTSVSLAVSRLSR----------------- 235 (621)
T ss_dssp GGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH-----HTTHHHHHHHHHHH-----------------
T ss_pred hhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHH-----------------
Confidence 322 12589999999999999999999999999998765542 12356666666531
Q ss_pred HHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccccc
Q 037612 301 IHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSN 380 (663)
Q Consensus 301 l~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~ 380 (663)
++.. .... ..++...
T Consensus 236 ---ll~~-~~~~-------------------------------------------------------------~~~~~~~ 250 (621)
T 2vgl_A 236 ---IVTS-ASTD-------------------------------------------------------------LQDYTYY 250 (621)
T ss_dssp ---HHHC-CSSS-------------------------------------------------------------CSTTEET
T ss_pred ---HHhC-CCCC-------------------------------------------------------------ccchhhc
Confidence 0000 0000 0000000
Q ss_pred CCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC-ChhhhHHHhhhccHHHHHHHhh----
Q 037612 381 GQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG-NSPICRSITESRALLCFAVLLE---- 455 (663)
Q Consensus 381 g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g-n~~~~~~I~esgal~~L~~LL~---- 455 (663)
|. .||- ++....+.|..++.. ++..... ...+|..++.
T Consensus 251 ~~----------------------------~~~w----~qi~il~ll~~~~~~~d~~~~~~-----l~~~L~~il~~~~~ 293 (621)
T 2vgl_A 251 FV----------------------------PAPW----LSVKLLRLLQCYPPPEDPAVRGR-----LTECLETILNKAQE 293 (621)
T ss_dssp TE----------------------------ESHH----HHHHHHHHGGGSSSCSSHHHHHH-----HHHHHHHHHHHHHS
T ss_pred CC----------------------------CCch----HHHHHHHHHHHhCCCCCHHHHHH-----HHHHHHHHHHhhcc
Confidence 00 0010 111112222222211 0111110 0112222221
Q ss_pred --------cCCh--hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 037612 456 --------KGPE--DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR 525 (663)
Q Consensus 456 --------~~~~--~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~ 525 (663)
+.+. .|.++|+.+++.+. .++++++ .+++.|.+++.+.+++++..+..+|..++.
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~-----------~~~~~L~~~L~~~~~niry~aL~~l~~l~~ 358 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLV-----------RACNQLGQFLQHRETNLRYLALESMCTLAS 358 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHH-----------HHHHHHHHHSSCSCHHHHHHHHHHHHHHTT
T ss_pred CcccccccccchHHHHHHHHHHHHHhcC----CcHHHHH-----------HHHHHHHHHhcCCCcchHHHHHHHHHHHHh
Confidence 1122 78888999988774 2445443 357788899988889999999999999987
Q ss_pred chhhH--hhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHH
Q 037612 526 TFKAT--ETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVL 602 (663)
Q Consensus 526 ~~~~~--e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~ 602 (663)
..... =....+-++..|+ +.+..++..|...|.++++. ++...|++ -|...+...+...+..++..
T Consensus 359 ~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~-----eL~~yl~~~d~~~~~~~v~~ 427 (621)
T 2vgl_A 359 SEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR------SNAQQIVA-----EMLSYLETADYSIREEIVLK 427 (621)
T ss_dssp CTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------HHHHHHHH-----HHHHHHHHCCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------hhHHHHHH-----HHHHHHHhcCHHHHHHHHHH
Confidence 65321 1345677788888 89999999999999999743 34555443 45555555565566666666
Q ss_pred HHHHhc
Q 037612 603 LCYIAL 608 (663)
Q Consensus 603 L~~la~ 608 (663)
++.++.
T Consensus 428 I~~la~ 433 (621)
T 2vgl_A 428 VAILAE 433 (621)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666663
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.94 E-value=9.2e-05 Score=90.76 Aligned_cols=265 Identities=15% Similarity=0.163 Sum_probs=171.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
+-.++..+.+ .+.+.|..|...|.+....+...-..-.....++.|++.|.+.++..+..|+.+|.+++..-.. ..+
T Consensus 8 l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~- 84 (1230)
T 1u6g_C 8 ISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV- 84 (1230)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH-
T ss_pred HHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH-
Confidence 4456778888 8999999999999886543211000001123578899999888899999999999999953222 111
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhH------HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhH
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKC------QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSI 301 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~------r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl 301 (663)
.-.++.|++.|.++++.++..++.+|+.++...+.. .... ....+|.|+..+...
T Consensus 85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~----------------- 145 (1230)
T 1u6g_C 85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQ----------------- 145 (1230)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCC-----------------
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCC-----------------
Confidence 236788888888888899999999999998532211 0000 112344444444310
Q ss_pred HHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccC
Q 037612 302 HAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNG 381 (663)
Q Consensus 302 ~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g 381 (663)
T Consensus 146 -------------------------------------------------------------------------------- 145 (1230)
T 1u6g_C 146 -------------------------------------------------------------------------------- 145 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhH
Q 037612 382 QDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDV 461 (663)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~v 461 (663)
+++ ..+..|..+|..++......-.. .-...+..|...|.+.+..+
T Consensus 146 -----------------------------~~~----~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~v 191 (1230)
T 1u6g_C 146 -----------------------------EDV----SVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAV 191 (1230)
T ss_dssp -----------------------------SCH----HHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHH
T ss_pred -----------------------------Cch----HHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHH
Confidence 011 13445555555555311100000 01234567777888888899
Q ss_pred HHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhhH----hhccHH
Q 037612 462 QYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKAT----ETRMIV 536 (663)
Q Consensus 462 q~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~~----e~~~I~ 536 (663)
|..|+.||..++...+.. .| ..+++.|+..+...+ +.++..++.+++.++...... -..++|
T Consensus 192 R~~a~~al~~l~~~~~~~------~~-------~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~ 258 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNI------VF-------VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 258 (1230)
T ss_dssp HHHHHHHHHHHTTTC----------C-------TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHH
T ss_pred HHHHHHHHHHHHHhcCHH------HH-------HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998886543211 11 236778887777654 467888999999998764431 135799
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 537 PLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 537 pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
.+++.+.+.+++++..|..++..++
T Consensus 259 ~ll~~l~d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 259 LVVKFCNVDDDELREYCIQAFESFV 283 (1230)
T ss_dssp HHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999998889999999999998876
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0022 Score=76.24 Aligned_cols=296 Identities=15% Similarity=0.103 Sum_probs=187.6
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc---cCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHH
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVK---EGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFA 236 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~---sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv 236 (663)
..-.|.-|+++|+.+-..+. .+++..|-..|. ++++..+-.|+.+|+.+.....+ .++..|.
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~ 435 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLK 435 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHH
T ss_pred chHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHH
Confidence 33467778888888765533 246788888887 56788999999999999865443 1578888
Q ss_pred HhhccCC--------hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 237 KILKEGP--------MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 237 ~lL~s~~--------~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
..|.+.+ +.++.-|+-+|+.....+. ++.++..|..+|..... ...+... -++. ++.
T Consensus 436 ~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~--~~~~~Aa---lALG-li~-- 500 (963)
T 4ady_A 436 NIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSA--TSGEAAA---LGMG-LCM-- 500 (963)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCH--HHHHHHH---HHHH-HHH--
T ss_pred HHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCH--HHHHHHH---HHHh-hhh--
Confidence 8887654 6677788888888754321 11245667777764421 0000000 0111 010
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
..++. . .-...+++
T Consensus 501 vGTgn-------~-----------------------~ai~~LL~------------------------------------ 514 (963)
T 4ady_A 501 LGTGK-------P-----------------------EAIHDMFT------------------------------------ 514 (963)
T ss_dssp TTCCC-------H-----------------------HHHHHHHH------------------------------------
T ss_pred cccCC-------H-----------------------HHHHHHHH------------------------------------
Confidence 11000 0 00001111
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-cCChhHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-KGPEDVQYNSAM 467 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-~~~~~vq~~aa~ 467 (663)
.+.. -++ ...++.++.+|+.+..|+...+ +.++.+|. ..++.+++-+++
T Consensus 515 --------~~~e---------~~~----e~vrR~aalgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~ 564 (963)
T 4ady_A 515 --------YSQE---------TQH----GNITRGLAVGLALINYGRQELA---------DDLITKMLASDESLLRYGGAF 564 (963)
T ss_dssp --------HHHH---------CSC----HHHHHHHHHHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHH
T ss_pred --------HHhc---------cCc----HHHHHHHHHHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHH
Confidence 0000 011 2468889999999988876554 45555555 578899999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh-hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhc-ccC
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE-KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLL-DER 545 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~-~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL-~~~ 545 (663)
++..-.++..++ .+|+.|+..+. +.+++++..|+.+||-++-.- ...++.++.+| +..
T Consensus 565 alglAyaGTGn~----------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~----~e~v~rlv~~L~~~~ 624 (963)
T 4ady_A 565 TIALAYAGTGNN----------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD----YTTVPRIVQLLSKSH 624 (963)
T ss_dssp HHHHHTTTSCCH----------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS----CSSHHHHTTTGGGCS
T ss_pred HHHHHhcCCCCH----------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC----HHHHHHHHHHHHhcC
Confidence 987555555432 24555665554 445788999999999875332 24799999866 678
Q ss_pred CHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 546 EAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 546 ~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
++.|+..|++||+.++.+.. + . ..|..|..|+...+..+...|+.+|..+-....+
T Consensus 625 d~~VR~gAalALGli~aGn~-----~-~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 625 NAHVRCGTAFALGIACAGKG-----L-Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSSC-----C-H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred CHHHHHHHHHHHHHhccCCC-----c-H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999864321 1 1 2456888889888887877899999988544444
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00038 Score=85.31 Aligned_cols=307 Identities=13% Similarity=0.065 Sum_probs=191.1
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch--
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV-- 223 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~-- 223 (663)
.++..++..|.. .+.+.|..|+.+|..++..... ..+ ...++.|+..|.++++..+..|+.+|..++..-...
T Consensus 48 ~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 48 KVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 344556677788 8999999999999999864332 111 235788889888888888999999999998421111
Q ss_pred ----HHHHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhh
Q 037612 224 ----EHMIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKA 298 (663)
Q Consensus 224 ----~~iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~ 298 (663)
..-.-...+|.|.+.+. ++++.++..|..+|..++...+.. + . ..++.++..|-..
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~---l-~-~~~~~ll~~l~~~-------------- 183 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL---L-V-NFHPSILTCLLPQ-------------- 183 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS---C-T-TTHHHHHHHHGGG--------------
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH---H-H-HHHHHHHHHHHHH--------------
Confidence 11122347899999998 577889999999999988422110 0 0 0111111111000
Q ss_pred hhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccc
Q 037612 299 TSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVK 378 (663)
Q Consensus 299 ~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~ 378 (663)
T Consensus 184 -------------------------------------------------------------------------------- 183 (1230)
T 1u6g_C 184 -------------------------------------------------------------------------------- 183 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCC
Q 037612 379 SNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP 458 (663)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~ 458 (663)
+. .+++ .++..|+.||..++...... + -...++.|...|....
T Consensus 184 -------------------L~----------~~~~----~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 184 -------------------LT----------SPRL----AVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKND 226 (1230)
T ss_dssp -------------------GG----------CSSH----HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTC
T ss_pred -------------------Hc----------CCcH----HHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCC
Confidence 00 0112 35778888888888643221 1 1234566666665543
Q ss_pred -hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH----hhc
Q 037612 459 -EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT----ETR 533 (663)
Q Consensus 459 -~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~----e~~ 533 (663)
.+++..++.++..|+..... .|.+ -...+++.+++.+.+.+++++..+..+++.+++.+... -..
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~-------~~~~---~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~ 296 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGH-------RIGE---YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST 296 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSG-------GGTT---SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhHH-------HHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHH
Confidence 46777888888888654321 2332 23468888999998888999999999999998865431 124
Q ss_pred cHHHHHHhcccC-------------------------------------CHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 534 MIVPLVKLLDER-------------------------------------EAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 534 ~I~pLV~LL~~~-------------------------------------~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
++|++++.+... ...+++.|+.+|..++... ++....+.
T Consensus 297 li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~----~~~~~~~~ 372 (1230)
T 1u6g_C 297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR----HEMLPEFY 372 (1230)
T ss_dssp HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTC----CTTHHHHH
T ss_pred HHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc----hhHHHHHH
Confidence 677777766310 1235778888888887522 12122222
Q ss_pred HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 037612 577 SAGGAKHLVQLVYFGEQIVQLSALVLLCYIAL 608 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~ 608 (663)
..-++.|+..++..++.++..++.+|..+..
T Consensus 373 -~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 373 -KTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp -TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 3345667776766666677777777766543
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.8e-05 Score=69.48 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=76.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhc
Q 037612 447 LLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLART 526 (663)
Q Consensus 447 l~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~ 526 (663)
++.|..+|++.++.++..++++|.++.. ..+++.|++++++.++.++..++.+||.+..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--------------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-
Confidence 6889999999999999999999976631 2357889999999999999999999998862
Q ss_pred hhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 527 FKATETRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 527 ~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
...++.|+.+|++.++.|+..|++||.++
T Consensus 103 -----~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 103 -----ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 35799999999999999999999999864
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0058 Score=69.91 Aligned_cols=284 Identities=14% Similarity=0.085 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL 239 (663)
+...|.++...|.++.....+ -..+.+..++++.+.+...++-+-.++.+++.....-..+ ++..|.+=|
T Consensus 51 ~~~~k~~~l~Kli~l~~~G~d------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl 120 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLLGHD------IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDL 120 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHSCC------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCC------CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhc
Confidence 566777777776665432221 0347888899999989999999999998888643222222 567788888
Q ss_pred ccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCC
Q 037612 240 KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGS 319 (663)
Q Consensus 240 ~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~ 319 (663)
.++++-++..|..+|+++.. ++.-. ..+|++..+|.++.
T Consensus 121 ~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d---------------------------------- 159 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGD---------------------------------- 159 (621)
T ss_dssp HSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSS----------------------------------
T ss_pred CCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCC----------------------------------
Confidence 89999999999999999963 33221 12344433331110
Q ss_pred CCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccccccccccc
Q 037612 320 NNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLS 399 (663)
Q Consensus 320 ~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~ 399 (663)
T Consensus 160 -------------------------------------------------------------------------------- 159 (621)
T 2vgl_A 160 -------------------------------------------------------------------------------- 159 (621)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcc
Q 037612 400 NYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKD 479 (663)
Q Consensus 400 ~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~ 479 (663)
.+| .++..|+.|+.++..-+++.. ...+.+..+.++|...++.|+.+|..+|.+|+.. +
T Consensus 160 -----------~~~----~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~---~ 218 (621)
T 2vgl_A 160 -----------TMD----SVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK---N 218 (621)
T ss_dssp -----------SCH----HHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---C
T ss_pred -----------CCH----HHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh---C
Confidence 122 357788889998888555433 2247788999999999999999999999998643 3
Q ss_pred HHHHhhhcCCCCchhHhHHHHHHHHhhhc-------------CcchhhHHHHHHHHhhhch-hhHhhccHHHHHHhcc--
Q 037612 480 AELRRSAFKPNAPACKAVVDQLFRIIEKA-------------DSDLLIPCIKAVGNLARTF-KATETRMIVPLVKLLD-- 543 (663)
Q Consensus 480 ~~~rr~a~~~~~~a~~~vv~qL~~ll~~~-------------~~~l~~~a~~aLg~La~~~-~~~e~~~I~pLV~LL~-- 543 (663)
++. |++ .....+..|-+++..+ ++-.++..++.|+.+++.. ......++.+|-+++.
T Consensus 219 ~~~----~~~---~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~ 291 (621)
T 2vgl_A 219 PEE----FKT---SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA 291 (621)
T ss_dssp HHH----HTT---HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHH----HHH---HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 331 222 1122344444555432 3457777788888777532 2212233444444432
Q ss_pred ----------cCC--HHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 544 ----------ERE--AEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 544 ----------~~~--~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
+.+ ..|.-||+.++..+... ++... .++..|..+|.++++.+|--|+..|..++...+
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-----~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~ 361 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-----PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEF 361 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCCc-----HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence 122 27888899998888521 11111 356788899988888888889999998876655
Q ss_pred C
Q 037612 612 D 612 (663)
Q Consensus 612 ~ 612 (663)
+
T Consensus 362 ~ 362 (621)
T 2vgl_A 362 S 362 (621)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00065 Score=67.61 Aligned_cols=179 Identities=11% Similarity=0.080 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHh
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKA 496 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~ 496 (663)
+.+..|+.+|..+..+++...... -...+..|.+++. ..+..|+..++.+|..++..-.. .| .+-...
T Consensus 30 ~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-------~~---~~~~~~ 98 (242)
T 2qk2_A 30 TLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-------RF---SNYASA 98 (242)
T ss_dssp HHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-------GG---HHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-------hH---HHHHHH
Confidence 458889999999998743321111 1244667888894 88999999999999998743321 12 133456
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
+++.|++.+.+.++.++..++.+|.++.....- ..++|.|...|++.++.++.++...|..+...-. ........+-
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-~~~~~~~~l~ 175 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--EAQQESIVESLSNKNPSVKSETALFIARALTRTQ-PTALNKKLLK 175 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC-GGGCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-CCCccHHHHH
Confidence 888999999888888999999999999876542 2479999999999999999999999999653210 0000122221
Q ss_pred HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 577 SAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
.-++.|+.+|....+.++..|..+|+.++...++
T Consensus 176 --~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 176 --LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp --HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred --HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 3578999999888888888899999998776664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.51 E-value=0.012 Score=69.82 Aligned_cols=259 Identities=13% Similarity=0.048 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh-
Q 037612 161 LEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL- 239 (663)
Q Consensus 161 ~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL- 239 (663)
...+.-|+..|+.....+. ++.+++.|..+|...+....+.|+.+|+.+-....|... +..|++.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a------i~~LL~~~~ 517 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA------IHDMFTYSQ 517 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH------HHHHHHHHh
Confidence 4456667777776543321 123467788888877777778999999987544444333 35566655
Q ss_pred ccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCC
Q 037612 240 KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGS 319 (663)
Q Consensus 240 ~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~ 319 (663)
.+.+..++..++.+|+.+.-..+ ..++.++++|.... ..+.+|.. ..++-.+....+
T Consensus 518 e~~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~-dp~vRyga------a~alglAyaGTG------- 574 (963)
T 4ady_A 518 ETQHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASD-ESLLRYGG------AFTIALAYAGTG------- 574 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCS-CHHHHHHH------HHHHHHHTTTSC-------
T ss_pred ccCcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCC-CHHHHHHH------HHHHHHHhcCCC-------
Confidence 34567899999999998875432 35688888886431 11222221 111111111000
Q ss_pred CCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccccccccccc
Q 037612 320 NNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLS 399 (663)
Q Consensus 320 ~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~ 399 (663)
+. ..+..++ +.+.
T Consensus 575 n~-----------------------~aIq~LL--------------------------------------------~~~~ 587 (963)
T 4ady_A 575 NN-----------------------SAVKRLL--------------------------------------------HVAV 587 (963)
T ss_dssp CH-----------------------HHHHHHH--------------------------------------------HHHH
T ss_pred CH-----------------------HHHHHHH--------------------------------------------HHhc
Confidence 00 0000111 1111
Q ss_pred ccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHH-HhhcCChhHHHHHHHHHHHHhhhhhc
Q 037612 400 NYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAV-LLEKGPEDVQYNSAMALMEITAVAEK 478 (663)
Q Consensus 400 ~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~-LL~~~~~~vq~~aa~AL~~i~a~a~~ 478 (663)
.+ .+ ..++..|+.+|+.++.|+++. ++.++. |++++++.+++.+++||..++++..+
T Consensus 588 ~d---------~~----d~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 588 SD---------SN----DDVRRAAVIALGFVLLRDYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HC---------SC----HHHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC
T ss_pred cC---------Cc----HHHHHHHHHHHHhhccCCHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc
Confidence 00 11 235788999999999887533 344444 55789999999999999998766431
Q ss_pred cHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHH----hcc--cCCHHHHHH
Q 037612 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVK----LLD--EREAEVSRE 552 (663)
Q Consensus 479 ~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~----LL~--~~~~~v~~e 552 (663)
..+++.|.++..+.++.+...|+.|||-+.....+....-|..+.+ ... +.++..+--
T Consensus 646 ----------------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fg 709 (963)
T 4ady_A 646 ----------------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFG 709 (963)
T ss_dssp ----------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred ----------------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3467888899888889999999999998864333221112333333 333 356777888
Q ss_pred HHHHHHhc
Q 037612 553 ASIALTKF 560 (663)
Q Consensus 553 Aa~AL~~l 560 (663)
|..|.+-+
T Consensus 710 a~iAqGll 717 (963)
T 4ady_A 710 ACVAQGIM 717 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888655
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.005 Score=61.73 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=118.2
Q ss_pred ccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 037612 445 RALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLA 524 (663)
Q Consensus 445 gal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La 524 (663)
+.+.-|..||...++.++.++.++|-++-..+. ..+|+ .-.+.+.|-+++++.+.|+.+...|+++|+.|=
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~--~~l~~-------~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LL 103 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRAD--SDLRM-------MVLERHLDVFINALSQENEKVTIKALRALGYLV 103 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC--HHHHH-------HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--ccccH-------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 367889999999999999999999999875542 22332 223567888999999999999999999999887
Q ss_pred hchhhHh---hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 037612 525 RTFKATE---TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALV 601 (663)
Q Consensus 525 ~~~~~~e---~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 601 (663)
.+.+-.+ .+.+..|++++.++++-...||+..|+++-... -++- -+..|.+|+.+.+..+|..|+.
T Consensus 104 e~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~------~~~~-----V~~~l~sLl~Skd~~vK~agl~ 172 (265)
T 3b2a_A 104 KDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLE------DSKL-----VRTYINELVVSPDLYTKVAGFC 172 (265)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC------CCHH-----HHHHHHHHHTCSSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCccc------chHH-----HHHHHHHHHhCCChhHHHHHHH
Confidence 6544433 367999999999999999999999999993221 1222 3457889998889989999999
Q ss_pred HHHHHhcCCCChH
Q 037612 602 LLCYIALHVPDSE 614 (663)
Q Consensus 602 ~L~~la~~~~~~~ 614 (663)
+|.+++...+|.+
T Consensus 173 ~L~eia~~S~D~~ 185 (265)
T 3b2a_A 173 LFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHGGGCSSCC
T ss_pred HHHHhhcccCCHH
Confidence 9999998777643
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.052 Score=59.77 Aligned_cols=132 Identities=18% Similarity=0.114 Sum_probs=93.9
Q ss_pred HHHHHhccCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCC--hHHHHHhhcc---------------C--ChHHHHHH
Q 037612 150 EQVAILYTAG-SLEHKSDAAASLVSLARDNDRYGKLIIEEGG--VGPLLKLVKE---------------G--KPEGQENA 209 (663)
Q Consensus 150 ~li~~L~~~G-~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~--Ip~Lv~LL~s---------------g--~~~~q~~A 209 (663)
.++..|+. . +.....-++.+|..|.+. +.+|..+.+.++ +|+++.++.. + ....|.++
T Consensus 171 ~~~~~L~~-~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ 248 (480)
T 1ho8_A 171 NLINILQN-IEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHS 248 (480)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHH
T ss_pred HHHHHhcc-ccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHH
Confidence 35666765 4 344455678888888876 889999987643 8888766541 1 25678999
Q ss_pred HHHHHHhcCCCcchHHHHHcCch--HHHHHhhcc-CChhHHHHHHHHHHHHhcCChh-----HHHHHHhCCcHHHHHHHh
Q 037612 210 ARAIGLLGRDPESVEHMIHSGVC--LVFAKILKE-GPMKVQAVVAWAVSELAGNYPK-----CQDLFAQHNIIRLLVGHL 281 (663)
Q Consensus 210 a~AL~nLs~~~~~~~~iv~aGaI--p~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~-----~r~~i~~~g~I~~LV~LL 281 (663)
.-+++-|+-+++....+...+.+ +.|+++++. ..+.+-..+..+|.||....+. ..+.+...++ ++++..|
T Consensus 249 ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 249 LLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 99999999988888888888754 778888876 5688888999999999975421 1223333444 5566766
Q ss_pred ccC
Q 037612 282 AFE 284 (663)
Q Consensus 282 ~sg 284 (663)
...
T Consensus 328 ~~r 330 (480)
T 1ho8_A 328 SER 330 (480)
T ss_dssp HSS
T ss_pred hhC
Confidence 544
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0053 Score=61.56 Aligned_cols=173 Identities=17% Similarity=0.100 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhh-hccHHHHhhhcCCCCchhHhH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVA-EKDAELRRSAFKPNAPACKAV 497 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a-~~~~~~rr~a~~~~~~a~~~v 497 (663)
+|.+|..+|..+-+.-+..-+...-...++-++.++++.++.+-.+|..+|--|-.+- =+.....+ +
T Consensus 49 vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K------------l 116 (265)
T 3b2a_A 49 TRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK------------A 116 (265)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH------------H
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH------------H
Confidence 5999999999999886666666677778999999999999999999999998774332 22223333 6
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH
Q 037612 498 VDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIIS 577 (663)
Q Consensus 498 v~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~ 577 (663)
.+.|..+++++++-+...++..+|.|..+. .-.+++.-|..|+.+.+.+++..+..+|.++++..+ .+++.+-|.
T Consensus 117 ~~aL~dlik~~~~il~~eaae~Lgklkv~~--~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~--D~~i~~~I~- 191 (265)
T 3b2a_A 117 AKTLVSLLESPDDMMRIETIDVLSKLQPLE--DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA--DSGHLTLIL- 191 (265)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHCCBSC--CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS--SCCCGGGTT-
T ss_pred HHHHHHHhcCCCchHHHHHHHHhCcCCccc--chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC--CHHHHHHHH-
Confidence 788999999989999999999999993222 124688899999999999999999999999985322 134444433
Q ss_pred cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCCh
Q 037612 578 AGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDS 613 (663)
Q Consensus 578 ~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~ 613 (663)
.+| -.||.+.|+.++..|+..|-.+. +.|-.
T Consensus 192 -~eI---~elL~~eD~~l~e~aLd~Le~il-s~pi~ 222 (265)
T 3b2a_A 192 -DEI---PSLLQNDNEFIVELALDVLEKAL-SFPLL 222 (265)
T ss_dssp -TTH---HHHHTCSCHHHHHHHHHHHHHHT-TSCCC
T ss_pred -HHH---HHHHcCCCHHHHHHHHHHHHHHH-cCccc
Confidence 344 45678889988999999998883 44443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.18 Score=48.84 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHH
Q 037612 422 MAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQL 501 (663)
Q Consensus 422 ~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL 501 (663)
.-|+|++.+|.-+++..+. .++.+..=.+-|++.++.|-+.+|-+|+.. ||++- ..++.-+
T Consensus 89 eIa~a~G~la~i~Pe~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIara---nP~l~-----------~~v~rdi 149 (253)
T 2db0_A 89 EIAKAFGQMAKEKPELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKA---NPMLM-----------ASIVRDF 149 (253)
T ss_dssp HHHHHHHHHHHHCHHHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHH---CHHHH-----------HHHHHHH
T ss_pred HHHHHHhHHHHhCHHHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHh---ChHHH-----------HHHHHHH
Confidence 3468889888877766543 456666667789999999999999999644 66654 3577889
Q ss_pred HHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCH
Q 037612 502 FRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGA 581 (663)
Q Consensus 502 ~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi 581 (663)
..++++.+..-+..+..=|+.+..+....-+-.+|-|..||.+++.-|+..|+.+|.++|... +.-.+.|.
T Consensus 150 ~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n----pklRkii~----- 220 (253)
T 2db0_A 150 MSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN----DKLRKVVI----- 220 (253)
T ss_dssp HHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC----HHHHHHHH-----
T ss_pred HHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC----HHHHHHHH-----
Confidence 999998886666666666666665544333456999999999999999999999999999653 33233322
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 582 KHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 582 ~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
--++=+...+..+|...-.+|..++
T Consensus 221 -~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 221 -KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp -HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 1223344455556766666666664
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0057 Score=60.66 Aligned_cols=127 Identities=18% Similarity=0.154 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhH
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAV 497 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~v 497 (663)
.++..|+.+|+.|+.+-...-.. .-...++++...+...+..++..++.||.++..... ...+
T Consensus 72 ~V~~~a~~~l~~la~~l~~~~~~-~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----------------~~~l 134 (242)
T 2qk2_A 72 VLVAMAGKCLALLAKGLAKRFSN-YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----------------LEAQ 134 (242)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----------------HHHH
Confidence 45788999999999743221111 223467788888888899999999999998854221 1347
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH------hhccHHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 498 VDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT------ETRMIVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 498 v~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~------e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
++.|...+++.++.++..++..|+.+...+... -..++|.|+.+|.+.+.+|+..|..+|+.++
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 788889999888999999999999976554211 1358999999999999999999999999986
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.012 Score=59.30 Aligned_cols=186 Identities=8% Similarity=0.099 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHH-HhcCChhhhHHHhh-hccHHHHHHHh-hcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchh
Q 037612 418 YMKAMAARALWH-LAKGNSPICRSITE-SRALLCFAVLL-EKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPAC 494 (663)
Q Consensus 418 ~lk~~Aa~AL~~-La~gn~~~~~~I~e-sgal~~L~~LL-~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~ 494 (663)
+.+..|..+|.. +..|++.......+ ...+..|.+.+ +..+..++..|+.+|..|+.+- +...|.. +-.
T Consensus 31 ~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l------~~~~f~~--~y~ 102 (249)
T 2qk1_A 31 KDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL------KTPGFSK--DYV 102 (249)
T ss_dssp HHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH------CTTTSCH--HHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc------ccccccH--HHH
Confidence 346778889999 88764432200011 23466788888 6788899999999999997433 2011220 334
Q ss_pred HhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCCh
Q 037612 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHS 569 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~ 569 (663)
..+++.|+..+.+..+.++..+..|+-++....... =..+++.|+..|++.++.+++++...|..++..... .+
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~-~~ 181 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD-GY 181 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS-CS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC-cc
Confidence 567888888888777888888888888887754210 114788999999999999999999999999743210 00
Q ss_pred hhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 570 DHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 570 ~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
+.-..-+...-++.|+.++...++.++..|..+|..++..+++
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 1111111245778999999888888888899999888777775
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.062 Score=57.29 Aligned_cols=270 Identities=13% Similarity=0.105 Sum_probs=158.5
Q ss_pred HHHHHHHHHhhcCChhh-HHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCC
Q 037612 165 SDAAASLVSLARDNDRY-GKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGP 243 (663)
Q Consensus 165 ~~AA~~L~~La~~~~~~-~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~ 243 (663)
.++...+.++....+.. .... ...-+..++++.+.+...++-.--.+.+++..++-.- + ++..|.+=+++++
T Consensus 45 ~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-L----v~Nsl~kDl~~~N 117 (355)
T 3tjz_B 45 AHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-I----VTSSLTKDMTGKE 117 (355)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-G----GHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-H----HHHHHHhhcCCCc
Confidence 44555555554332321 1111 1345677899999999999999899999987643321 2 7889999999999
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCcc
Q 037612 244 MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKV 323 (663)
Q Consensus 244 ~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~ 323 (663)
+-++..|..+|+++... + .++.+...++.. ++
T Consensus 118 ~~iR~lALRtL~~I~~~--~---------m~~~l~~~lk~~-------------------L~------------------ 149 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDS--T---------MLQAIERYMKQA-------------------IV------------------ 149 (355)
T ss_dssp HHHHHHHHHHHHHHCCT--T---------THHHHHHHHHHH-------------------HT------------------
T ss_pred HhHHHHHHHHHhcCCCH--H---------HHHHHHHHHHHH-------------------cC------------------
Confidence 99999999999999742 2 334444433210 00
Q ss_pred ccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCC
Q 037612 324 IDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGA 403 (663)
Q Consensus 324 i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 403 (663)
T Consensus 150 -------------------------------------------------------------------------------- 149 (355)
T 3tjz_B 150 -------------------------------------------------------------------------------- 149 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHH
Q 037612 404 NTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELR 483 (663)
Q Consensus 404 ~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~r 483 (663)
..+| +++..|+-+.++|...+++..+ +-+.-+-.++.+.++.|+++|..+|.+|... +.
T Consensus 150 ------d~~p----yVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~---d~--- 208 (355)
T 3tjz_B 150 ------DKVP----SVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKN---DR--- 208 (355)
T ss_dssp ------CSSH----HHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT---CH---
T ss_pred ------CCCH----HHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh---ch---
Confidence 0022 3466777788888876666543 4566777888899999999999999998632 11
Q ss_pred hhhcCCCCchhHhHHHHHHHHhhhc---CcchhhHHHHHHHHhhhch-hhHhhccHHHHHHhcccCCHHHHHHHHHHHHh
Q 037612 484 RSAFKPNAPACKAVVDQLFRIIEKA---DSDLLIPCIKAVGNLARTF-KATETRMIVPLVKLLDEREAEVSREASIALTK 559 (663)
Q Consensus 484 r~a~~~~~~a~~~vv~qL~~ll~~~---~~~l~~~a~~aLg~La~~~-~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~ 559 (663)
..+..|+.-+..+ ++-.+..-++.++.+...- ......++..|...|++.++-|.-||+.++..
T Consensus 209 ------------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~ 276 (355)
T 3tjz_B 209 ------------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVN 276 (355)
T ss_dssp ------------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC
T ss_pred ------------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 1223344333332 1223333344443333322 11124578888999999999999999999999
Q ss_pred cccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 560 FACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 560 la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
+..... .+. .-++.+|..+|.++++.+|--|+..|-.++...|
T Consensus 277 l~~~~~--------~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 277 LPGCSA--------KEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp --------------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred ccCCCH--------HHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 853211 111 3457788888999998888888887766654444
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.049 Score=54.85 Aligned_cols=184 Identities=11% Similarity=0.116 Sum_probs=118.5
Q ss_pred HHHHhhcCChhHHHHHHHHHHH-HhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh-hhcCcchhhHHHHHHHHhhhch
Q 037612 450 FAVLLEKGPEDVQYNSAMALME-ITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII-EKADSDLLIPCIKAVGNLARTF 527 (663)
Q Consensus 450 L~~LL~~~~~~vq~~aa~AL~~-i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll-~~~~~~l~~~a~~aLg~La~~~ 527 (663)
|...+++.+-.-+..+..+|.. +..+.. + +.+...-...+++.|.+.+ .+.+..+...|+.+|+.|+..+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~---~-----i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTK---K-----LKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCC---C-----BCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCC---c-----cccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 4555677788888888888877 643311 1 1110111134577788888 5666788899999999999877
Q ss_pred h-h-----HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCC--CCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 037612 528 K-A-----TETRMIVPLVKLLDEREAEVSREASIALTKFACSD--NYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSA 599 (663)
Q Consensus 528 ~-~-----~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~--~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~A 599 (663)
. . --..++|+++..+.+..+.|+..+..||.+++..- +..+. .-.. -++.|...|.+..+.+++.+
T Consensus 93 ~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~-~l~~-----ll~~l~~~l~~k~~~vk~~a 166 (249)
T 2qk1_A 93 KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG-RNED-----MLKDILEHMKHKTPQIRMEC 166 (249)
T ss_dssp CTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTC-TTHH-----HHHHHHHHTTCSSHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCC-cHHH-----HHHHHHHHHcCCChHHHHHH
Confidence 6 2 12347999999999999999999888888886321 10000 0111 45678888888888888899
Q ss_pred HHHHHHHhcCCCCh-HHHHh---ccchhhhhhccccccccccCCcHHHHHHHHHHH
Q 037612 600 LVLLCYIALHVPDS-EDLAQ---AEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651 (663)
Q Consensus 600 l~~L~~la~~~~~~-~~i~~---~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~l 651 (663)
+.+|..++.+.+.. ..+.. ..++|.|...... .++.++.-+.+++..+
T Consensus 167 l~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D----~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 167 TQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND----TQPAIRTIGFESFAIL 218 (249)
T ss_dssp HHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC----SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHH
Confidence 99999998777652 33222 3456666422211 1334666666655544
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.076 Score=56.60 Aligned_cols=165 Identities=13% Similarity=0.158 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhH
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAV 497 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~v 497 (663)
+.+..-.+.|+-+..|.+--+.+.+ ......++++.+.+.++|+-.=.++++++...+ + +--+
T Consensus 43 kc~~~l~kll~l~~~G~~f~~~e~t--~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~---e------------~iLv 105 (355)
T 3tjz_B 43 KCAHILTKILYLINQGEHLGTTEAT--EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE---D------------VIIV 105 (355)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHH--HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS---C------------GGGG
T ss_pred HHHHHHHHHHHHHHCCCCCchhHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH---H------------HHHH
Confidence 4555667778877778543333222 234455789999999999988888887764422 1 1136
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH
Q 037612 498 VDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIIS 577 (663)
Q Consensus 498 v~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~ 577 (663)
+..|.+=+.+.++-+...|+++|+++...--. ..+.+++.+.|.+++++|++.|+.+..++.... + .+++
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~--~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~----p----e~v~ 175 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTML--QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS----F----DVVK 175 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC----H----HHHH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC----H----HHHH
Confidence 77888888998999999999999999643221 136888888999999999999999999996321 2 2444
Q ss_pred cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 578 AGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 578 ~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
+.+.-+-.++...++.+|.+|+.+|+.+..+.
T Consensus 176 -~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 176 -RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 68899999999999999999999999987654
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.022 Score=59.98 Aligned_cols=135 Identities=15% Similarity=0.077 Sum_probs=107.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHH
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
-+.+.+..|++ ++.+.+..|...|..+-..+.......++.+|+..|++...+++...|-.+.+||.+|-.+...-..|
T Consensus 119 ra~~iiekL~~-~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 119 RVNAILEKLYS-SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 34667899999 99999999999888833344667888999999999999999999999999999999999876666556
Q ss_pred H-HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhC--------C--cHHHHHHHhc
Q 037612 227 I-HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQH--------N--IIRLLVGHLA 282 (663)
Q Consensus 227 v-~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~--------g--~I~~LV~LL~ 282 (663)
+ ..-.|..++.++.+....|...|...|..++..++.....+.++ | -...||.+|.
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 6 45578888888888888899999999999987665444433321 1 2678999996
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.087 Score=63.15 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=80.8
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcc--hHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPES--VEH 225 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~--~~~ 225 (663)
+.+++..+.. .+...+..|+..|.++...+... ..+..+.+..|.+.+...+.. |.|..++..|+..... ...
T Consensus 16 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSV-ATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTT-CCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccc-cchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 3445666777 66667778888888876542111 112236677888888764333 9999999999943221 112
Q ss_pred HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhc-CChhHHHHHHhCCcHHHHHHHhcc
Q 037612 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAG-NYPKCQDLFAQHNIIRLLVGHLAF 283 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~-~~~~~r~~i~~~g~I~~LV~LL~s 283 (663)
-.--+.+|.+.+.+.+....|+..|..|+..|.. -+|+.- ..++|.|+.-|.+
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVE 144 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcc
Confidence 2222578888888877778898888877777764 244443 2356777777754
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.16 Score=53.48 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=74.0
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHH-hcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHH
Q 037612 191 VGPLLKLVKEGKPEGQENAARAIGL-LGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269 (663)
Q Consensus 191 Ip~Lv~LL~sg~~~~q~~Aa~AL~n-Ls~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~ 269 (663)
+..+++-|.+++.+.++.|..-|.. ++.+.+.....+..+|+..|+++...++...+..+..|+.+|-.+ .....-+.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchh
Confidence 3455666777888888888888887 667899999999999999999999999999999999999999874 45554444
Q ss_pred -hCCcHHHHHHHhcc
Q 037612 270 -QHNIIRLLVGHLAF 283 (663)
Q Consensus 270 -~~g~I~~LV~LL~s 283 (663)
+...|.-|+.++.+
T Consensus 199 s~~~fI~~lyslv~s 213 (339)
T 3dad_A 199 AHSDTIQWLYTLCAS 213 (339)
T ss_dssp HCHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHcC
Confidence 44567777777763
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.32 Score=47.19 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=87.2
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV 223 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~ 223 (663)
++..|--+++-.+. |++..|.+-+.+|..+++.|+..-.- .+.-+..+|.+.+.. .-..||.-|+.-.+|.
T Consensus 105 v~~vVp~lfanyri-gd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~---Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 105 VKSMIPVLFANYRI-GDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNRE---DKLTALNFIEAMGENS 175 (253)
T ss_dssp HHHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHH---HHHHHHHHHHTCCTTT
T ss_pred HHhhHHHHHHHHhc-CCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChH---HHHHHHHHHHHHhccC
Confidence 33444445667788 99999999999999999988864443 445677888876633 3345566666555554
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLF 268 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i 268 (663)
-+-+ .-.+|.|..+|.+++.-|+..|..+|.+||..+|..|..+
T Consensus 176 ~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 176 FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 4443 3589999999999999999999999999999888888765
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=94.99 E-value=5.4 Score=43.86 Aligned_cols=331 Identities=16% Similarity=0.157 Sum_probs=185.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh---hhHHHHHhcCCh--HHHHHhhccCChHHHHHHHHHHHHhcC-CCc
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDND---RYGKLIIEEGGV--GPLLKLVKEGKPEGQENAARAIGLLGR-DPE 221 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~---~~~~~Ive~G~I--p~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~ 221 (663)
+..++..|+.....+.......-+..|..+++ .......+.... +++-.++..++.-.+..|...+..++. ...
T Consensus 79 ~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~ 158 (480)
T 1ho8_A 79 LIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH 158 (480)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc
Confidence 44457777753577777777777777777654 222222333322 133334444445566666666666653 222
Q ss_pred chHHHHHcCchH--HHHHhhccC-ChhHHHHHHHHHHHHhcCChhHHHHHHhCCc--HHHHHHHhccCccchhhhHHHhh
Q 037612 222 SVEHMIHSGVCL--VFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQDLFAQHNI--IRLLVGHLAFETVQEHSKYAIVS 296 (663)
Q Consensus 222 ~~~~iv~aGaIp--~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~--I~~LV~LL~sgt~~~~s~~~v~~ 296 (663)
+...+ ...+. .+...|+.. +.+.+..++.+|..|.. .+++|..|.+.++ +|+++.+++.-. .+
T Consensus 159 ~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~---------~~ 226 (480)
T 1ho8_A 159 NVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRAT---------DS 226 (480)
T ss_dssp CHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHH---------C-
T ss_pred cHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhh---------cc
Confidence 11111 11222 456666653 34556778888888886 6799999876543 777777664210 00
Q ss_pred hhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcc
Q 037612 297 KATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTD 376 (663)
Q Consensus 297 ~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~ 376 (663)
+. +. .++ +
T Consensus 227 ~~-~~-~~~--------------------------------------------------~-------------------- 234 (480)
T 1ho8_A 227 QL-AT-RIV--------------------------------------------------A-------------------- 234 (480)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-cc-ccc--------------------------------------------------c--------------------
Confidence 00 00 000 0
Q ss_pred ccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccH--HHHHHHh
Q 037612 377 VKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRAL--LCFAVLL 454 (663)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal--~~L~~LL 454 (663)
.++++. -.+++=.+...+|-|+. ++..+..+.+.+.. +.|+.++
T Consensus 235 ~~~~~~---------------------------------~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~ 280 (480)
T 1ho8_A 235 TNSNHL---------------------------------GIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLV 280 (480)
T ss_dssp ----CC---------------------------------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH
T ss_pred ccCCCc---------------------------------cHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHH
Confidence 000000 13567788899999999 45677777766633 4555556
Q ss_pred h-cCChhHHHHHHHHHHHHhhhhhc-cHHHHhhhcCCCCchh-HhHHHHHHHHhhhc--CcchhhHHHHHHHH-hhh---
Q 037612 455 E-KGPEDVQYNSAMALMEITAVAEK-DAELRRSAFKPNAPAC-KAVVDQLFRIIEKA--DSDLLIPCIKAVGN-LAR--- 525 (663)
Q Consensus 455 ~-~~~~~vq~~aa~AL~~i~a~a~~-~~~~rr~a~~~~~~a~-~~vv~qL~~ll~~~--~~~l~~~a~~aLg~-La~--- 525 (663)
+ +..+.|-.-+..+|.|+...... ....-.. ... ..+ .+++..+... +|+-...-+..|.. |..
T Consensus 281 k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~------~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 281 KITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ------LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp HHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH------HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhHHHHHHHHHHHhcccchhhhhHHHH------HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5 45678888888999998643310 1111110 000 111 2344444432 23222222222211 111
Q ss_pred ---chh-------------------------------hHhhccHHHHHHhccc----------CCHHHHHHHHHHHHhcc
Q 037612 526 ---TFK-------------------------------ATETRMIVPLVKLLDE----------REAEVSREASIALTKFA 561 (663)
Q Consensus 526 ---~~~-------------------------------~~e~~~I~pLV~LL~~----------~~~~v~~eAa~AL~~la 561 (663)
+|. ..+-.++.-|+++|++ .++.+..-|+.=|+.|+
T Consensus 354 ~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefv 433 (480)
T 1ho8_A 354 ELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV 433 (480)
T ss_dssp TCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHH
Confidence 111 0111369999999973 46777777888899997
Q ss_pred cCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 562 CSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 562 ~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
. ++|+..+.+-+.||-..+++|+.++++.++-+|+.++--+-
T Consensus 434 r----~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 434 E----LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp H----HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred H----HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3 25666667778888888889999999999999999886553
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.23 E-value=2.5 Score=50.29 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=58.3
Q ss_pred HHHHHHHhhcCC---h--hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc-----CcchhhHH
Q 037612 447 LLCFAVLLEKGP---E--DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA-----DSDLLIPC 516 (663)
Q Consensus 447 l~~L~~LL~~~~---~--~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~-----~~~l~~~a 516 (663)
+..|..+++... . .....+..||+.+....++ .|. |-+..+++.|...+... ++.+...+
T Consensus 550 l~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~-------~~~---p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~ 619 (960)
T 1wa5_C 550 LKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED-------SIQ---PLFPQLLAQFIEIVTIMAKNPSNPRFTHYT 619 (960)
T ss_dssp HHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT-------TTG---GGHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH-------hhh---hHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 335556666541 1 1234566666666433321 122 44556777777666542 23455668
Q ss_pred HHHHHHhhhch-----hhHhhccHHHHHHhcccCCHHHHHHHHHHHHh
Q 037612 517 IKAVGNLARTF-----KATETRMIVPLVKLLDEREAEVSREASIALTK 559 (663)
Q Consensus 517 ~~aLg~La~~~-----~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~ 559 (663)
+.+|+.+++.. ..-+..++|++...|++...+...++...+..
T Consensus 620 ~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~ 667 (960)
T 1wa5_C 620 FESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAF 667 (960)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 88888888751 11234678999999976655555554444433
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.58 E-value=23 Score=41.69 Aligned_cols=55 Identities=7% Similarity=-0.028 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh---c--cCChhHHHHHHHHHHHHhc
Q 037612 201 GKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL---K--EGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 201 g~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL---~--s~~~~vq~~Aa~aL~nLA~ 259 (663)
.+...++.|..+++.++....... ...++.++.++ . ++++.++..++|+|+.++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCN 535 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHH
Confidence 356688999999999985322111 13445555544 2 3478999999999999884
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.26 E-value=2.8 Score=41.99 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCChhh--hHHH---hhhccHHHHH-HHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCC
Q 037612 418 YMKAMAARALWHLAKGNSPI--CRSI---TESRALLCFA-VLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNA 491 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~--~~~I---~esgal~~L~-~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~ 491 (663)
.++..|..+|..++.+.... .... .-...++.|+ +.|.+....++..+..++..+......
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~------------- 136 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS------------- 136 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-------------
Confidence 46777888888887642211 1111 1122233333 234456677888777777655422211
Q ss_pred chhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh-------hccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 492 PACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE-------TRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 492 ~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e-------~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
...+++.++..+.+.++.++..|+..|..+-..|.... ..+++.+..+|+++++.|+.+|...+..+
T Consensus 137 --~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 137 --ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp --SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 12355667777778889999999888888877765422 12566788889999999999999888777
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=88.27 E-value=0.17 Score=51.04 Aligned_cols=64 Identities=16% Similarity=0.083 Sum_probs=48.1
Q ss_pred HhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchH
Q 037612 154 ILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCL 233 (663)
Q Consensus 154 ~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp 233 (663)
+++. .+.+.|..||..| ....|..|++..++.++..|+..| . .+
T Consensus 58 ll~d-~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~ 101 (244)
T 1lrv_A 58 YLAD-PFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------RE 101 (244)
T ss_dssp GTTC-SSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SG
T ss_pred HhcC-CCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------HH
Confidence 4567 7888888888753 133477888888899999988653 1 24
Q ss_pred HHHHhhccCChhHHHHHHHH
Q 037612 234 VFAKILKEGPMKVQAVVAWA 253 (663)
Q Consensus 234 ~Lv~lL~s~~~~vq~~Aa~a 253 (663)
.|..++++++..|+..++..
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 68888899999999988874
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=88.02 E-value=47 Score=38.90 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh---ccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLV---KEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLV 234 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL---~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~ 234 (663)
.+...++.|..+++.++..-.... ...++.++..| .++++.++..+.++|+..+.. ..+. .. -...++.
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~vl~~ 533 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSVLPL 533 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTTHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHHHHH
Confidence 477888889999999986533211 12234444433 234688999999999999853 2222 22 2468888
Q ss_pred HHHhhccCChhHHHHHHHHHHHHhc
Q 037612 235 FAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 235 Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
|++.|.+ +.|+..|++++.+++.
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~ 556 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICR 556 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHH
Confidence 8888865 7899999999999995
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=82.44 E-value=12 Score=44.46 Aligned_cols=179 Identities=7% Similarity=0.091 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh----ccHHHHhhhcCCCCch
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAE----KDAELRRSAFKPNAPA 493 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~----~~~~~rr~a~~~~~~a 493 (663)
.++..|+++|+.++.-- ... .-...++.++..|.+.+..|+.+||+||.+++...+ ..++..+..+ .|-
T Consensus 473 ~vr~~a~~~lg~~~~~~---~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l---~p~ 545 (960)
T 1wa5_C 473 ILRVDAIKYIYTFRNQL---TKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI---SNS 545 (960)
T ss_dssp HHHHHHHHHHHHTGGGS---CHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT---TTT
T ss_pred eehHHHHHHHHHHHhhC---CHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHh---hhh
Confidence 46999999999998742 111 234456677778887788899999999999875321 0011111112 244
Q ss_pred hHhHHHHHHHHhhhcC-----cchhhHHHHHHHHhhhchhhHh----hccHHHHHHhccc-----CCHHHHHHHHHHHHh
Q 037612 494 CKAVVDQLFRIIEKAD-----SDLLIPCIKAVGNLARTFKATE----TRMIVPLVKLLDE-----REAEVSREASIALTK 559 (663)
Q Consensus 494 ~~~vv~qL~~ll~~~~-----~~l~~~a~~aLg~La~~~~~~e----~~~I~pLV~LL~~-----~~~~v~~eAa~AL~~ 559 (663)
...+++.|+.++.... ......+..+|+.++..+...- ..++++|+..+.. .+.........+|+.
T Consensus 546 l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~ 625 (960)
T 1wa5_C 546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA 625 (960)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 5667888888888751 1234677788887776554211 1345666666632 355566566777777
Q ss_pred cccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 560 FACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 560 la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
++... .++....+ ..--++++...|.........++...++.+.
T Consensus 626 l~~~~---~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 626 ILNYT---QRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTS---CGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHhcC---CcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 76431 12333332 3345577777776553334555666666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 663 | ||||
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-18 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-05 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-16 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.002 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 5e-11 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-09 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 1e-09 |
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.0 bits (211), Expect = 2e-18
Identities = 46/459 (10%), Positives = 135/459 (29%), Gaps = 28/459 (6%)
Query: 158 AGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG-LL 216
+ ++++ A + ++ + + + GG+ L+ L++ Q+ AA A+ L+
Sbjct: 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72
Query: 217 GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRL 276
R + +L+ + + + ++ + L
Sbjct: 73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVL 132
Query: 277 LVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIP 336
+ + + + A+ N ++ + + + + SL+
Sbjct: 133 ADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMA 192
Query: 337 HPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQH 396
+ S+ + + + V + ++ N ++ +++ +
Sbjct: 193 YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252
Query: 397 GLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK 456
M + N + S A+ + L+ K
Sbjct: 253 ------------------KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294
Query: 457 GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPC 516
+D + ++ L S + + Q+ R+++ +SD++
Sbjct: 295 SKKDATLEACAGALQNLT---ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351
Query: 517 IKAVGNLAR---TFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYL--HSDH 571
+ N++R + ++ + +LL S I + N +
Sbjct: 352 ASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL 411
Query: 572 SKAIISAGGAKHLVQLVY-FGEQIVQLSALVLLCYIALH 609
+K S+ +++ L +A +LL +
Sbjct: 412 AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 534 MIVP-LVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGE 592
+ +P V+ L ++ + + + D + + GG LV L+
Sbjct: 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD----ESAKQQVYQLGGICKLVDLLRSPN 57
Query: 593 QIVQLSALVLLCYIALHVPDSED-LAQAEVLTVLEWTSKQSHM 634
Q VQ +A L + ++ + + +++
Sbjct: 58 QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN 100
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.8 bits (192), Expect = 6e-16
Identities = 53/480 (11%), Positives = 116/480 (24%), Gaps = 31/480 (6%)
Query: 167 AAASLVSLARDNDRYGKLIIEEGGVGPLLKLVK-EGKPEGQENAARAIGLLGRDPESVEH 225
AA + L++ ++ V +++ ++ E A + L E +
Sbjct: 37 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96
Query: 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAF-- 283
+ SG K+L V + L + + ++ +V L
Sbjct: 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 156
Query: 284 ETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKT 343
+ + A + + A + + E + + + +
Sbjct: 157 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216
Query: 344 PSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGA 403
S +V +G ++ N D KQ
Sbjct: 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLG------T 270
Query: 404 NTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY 463
+ +D + +L N + + + + + +
Sbjct: 271 LVQLLGSDDINVVTCAAGIL----SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326
Query: 464 NSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523
+ VV L + I+ +
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386
Query: 524 ARTFKATETRMIVP-LVKLLDEREAEVSREASIALTKFACSDNYL--------------- 567
+ +P LV+LL + R S+ T+ +
Sbjct: 387 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 446
Query: 568 --HSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625
+ I VQL+Y + +Q A +LC +A +E + L
Sbjct: 447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 167 AAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHM 226
+L LARD +I + ++L+ Q AA + L +D E+ E +
Sbjct: 439 CTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497
Query: 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
G ++L V A + ++
Sbjct: 498 EAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.002
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 531 ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF 590
TR I L KLL++ + V +A++ + + + + H + S +V+ +
Sbjct: 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH----AIMRSPQMVSAIVRTMQN 70
Query: 591 GEQI-VQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625
+ L ++ H + ++ + L
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL 106
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.9 bits (151), Expect = 5e-11
Identities = 59/440 (13%), Positives = 129/440 (29%), Gaps = 26/440 (5%)
Query: 137 PIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLA-RDNDRYGKLIIEEGGVGPLL 195
I +N+ + E + + +LE + A + L R+ II G + +
Sbjct: 3 DIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 62
Query: 196 KLVKEG-KPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
+ + Q +A A+ + E + ++ G F +L + WA
Sbjct: 63 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 122
Query: 254 VSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAI--VSKATSIHAVVVASNKT 311
+ +AG+ +DL +H I L+ LA + + + ++ S
Sbjct: 123 LGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 182
Query: 312 NNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVI 371
+A V L + N + K + K
Sbjct: 183 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 242
Query: 372 NQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLA 431
+ N+ Q Q + L +P T +A + ++
Sbjct: 243 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT--WTMSNIT 300
Query: 432 KGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNA 491
G + + + +L K Q +A A+ T + E
Sbjct: 301 AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT--SGGTVEQIVYLVHCG- 357
Query: 492 PACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-----------ETRMIVPLVK 540
+++ L ++ D+ ++ + A+ N+ + + E + +
Sbjct: 358 -----IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 412
Query: 541 LLDEREAEVSREASIALTKF 560
L V + + + K+
Sbjct: 413 LQRHENESVYKASLNLIEKY 432
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 59/429 (13%), Positives = 130/429 (30%), Gaps = 24/429 (5%)
Query: 188 EGGVGPLLKLVKEGKPEGQENAARAIG-LLGRDPE-SVEHMIHSGVCLVFAKILKEGP-M 244
V ++K + E Q A +A LL R+ + ++++I +G+ F L +
Sbjct: 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71
Query: 245 KVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA--FETVQEHSKYAIVSKATSIH 302
+Q AWA++ +A + I + LA + E + +
Sbjct: 72 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA-VWALGNIAGDG 130
Query: 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTK 362
+ + A + D + + + + +
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190
Query: 363 PVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAM 422
P + N + + + + ++ + G + +L +
Sbjct: 191 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250
Query: 423 AARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAEL 482
+ + + ++ AL F LL ++Q + + ITA
Sbjct: 251 LRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG------- 302
Query: 483 RRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV------ 536
+ +V L ++ KAD A+ N + +V
Sbjct: 303 --RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 360
Query: 537 PLVKLLDEREAEVSREASIALTKFACSDNYLHSDH--SKAIISAGGAKHLVQLVYFGEQI 594
PL+ LL ++ ++ + A++ + L S I GG + L +
Sbjct: 361 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 420
Query: 595 VQLSALVLL 603
V ++L L+
Sbjct: 421 VYKASLNLI 429
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.6 bits (140), Expect = 1e-09
Identities = 55/439 (12%), Positives = 131/439 (29%), Gaps = 57/439 (12%)
Query: 174 LARDNDRYGKLIIEEGGVGPLLKLVKEGK-PEGQENAARAIGLLGR-DPESVEHMIHSGV 231
L+R++ ++I+ G V L++ ++E + Q AA A+ + + ++ +
Sbjct: 104 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 163
Query: 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSK 291
+F ++L G ++V+ WA+ +AG+ +D Q N + L + S
Sbjct: 164 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP---ILGLFNSNKPSL 220
Query: 292 YAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVV 351
+ S + + +L+ S
Sbjct: 221 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEA 280
Query: 352 TNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELE 411
+ K + + + + + N+ + Q Q ++ L
Sbjct: 281 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 340
Query: 412 DPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALME 471
P K +K A + ++ GN+ +++ ++ + LLE + + A+
Sbjct: 341 SP--KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 398
Query: 472 ITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE 531
++ + ++ R
Sbjct: 399 ASSGGLQRPDIIRYLVSQGC---------------------------------------- 418
Query: 532 TRMIVPLVKLLDEREAEVSREASIALTK-------FACSDNYLHSDHSKAIISAGGAKHL 584
I PL LL+ + + AL + ++++ I AGG + +
Sbjct: 419 ---IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 475
Query: 585 VQLVYFGEQIVQLSALVLL 603
+ A ++
Sbjct: 476 FNCQQNENDKIYEKAYKII 494
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 663 | |||
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.97 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.94 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.93 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.79 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.78 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.01 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.94 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.89 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.82 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.74 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.58 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.03 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.9 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.89 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.87 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.79 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.73 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.63 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.6 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.3 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.27 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.02 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 96.73 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.57 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.53 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.26 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 92.52 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 85.92 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 85.34 |
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8e-32 Score=286.86 Aligned_cols=412 Identities=14% Similarity=0.169 Sum_probs=317.1
Q ss_pred chhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC
Q 037612 141 NEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR 218 (663)
Q Consensus 141 ~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~ 218 (663)
.+.+.+.++++|..|++ ++.+.+.+|+.+|+++.+.++ .....+++.|+||+|+++|++. ++.+|..|+++|.||+.
T Consensus 8 ~~~~~~~i~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~ 86 (434)
T d1q1sc_ 8 QGTVNWSVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 86 (434)
T ss_dssp TSSSSCCHHHHHHHHTS-SCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHT
T ss_pred cchhhhhHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 34456668889999999 999999999999999865422 2256788999999999999755 57899999999999986
Q ss_pred -CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhh
Q 037612 219 -DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSK 297 (663)
Q Consensus 219 -~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~ 297 (663)
+++++..+++.|++|+|+++|+++++++++.++++|+||+.++++.+..+.+.|++++|+.++...........
T Consensus 87 ~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~----- 161 (434)
T d1q1sc_ 87 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG----- 161 (434)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH-----
T ss_pred CChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHH-----
Confidence 56789999999999999999999999999999999999999889999999999999999999987643221110
Q ss_pred hhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccc
Q 037612 298 ATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDV 377 (663)
Q Consensus 298 ~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~ 377 (663)
.+..+.+.....+. +......+ + ....++. .
T Consensus 162 --~~~~~~~~l~~~~~---~~~~~~~~--~------------------~~~~~l~-~----------------------- 192 (434)
T d1q1sc_ 162 --YLRNLTWTLSNLCR---NKNPAPPL--D------------------AVEQILP-T----------------------- 192 (434)
T ss_dssp --HHHHHHHHHHHHTC---CCTTCCCH--H------------------HHHHHHH-H-----------------------
T ss_pred --HHHHHHHHHHHHhh---cccccchh--h------------------hhhhHHH-H-----------------------
Confidence 11111111111110 00000000 0 0000000 0
Q ss_pred cccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC
Q 037612 378 KSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG 457 (663)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~ 457 (663)
+. .....+|++ ++..|+.+|.+|+.++......+.+.|+++.|+.+++++
T Consensus 193 ----------------l~----------~ll~~~~~~----~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~ 242 (434)
T d1q1sc_ 193 ----------------LV----------RLLHHNDPE----VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 242 (434)
T ss_dssp ----------------HH----------HHTTCSCHH----HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred ----------------HH----------HHHhccccc----hhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccc
Confidence 00 001123543 588899999999999888888899999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----Hhh
Q 037612 458 PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TET 532 (663)
Q Consensus 458 ~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~ 532 (663)
+.+++..++++|.+++.. +++.++..++ .++++.|+.++++.+++++..++.+|++|+..... .+.
T Consensus 243 ~~~~~~~al~~l~~l~~~---~~~~~~~~~~------~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 313 (434)
T d1q1sc_ 243 ELPIVTPALRAIGNIVTG---TDEQTQKVID------AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313 (434)
T ss_dssp CHHHHHHHHHHHHHHTTS---CHHHHHHHHH------TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred hhhhhhchhhhhhhHHhh---hhHHHHHHHh------ccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhh
Confidence 999999999999999754 3344433322 24677899999999999999999999999875433 246
Q ss_pred ccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh---cC
Q 037612 533 RMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA---LH 609 (663)
Q Consensus 533 ~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la---~~ 609 (663)
+++|+++++|.+.+++++.+|+|+|.|++...+ .++...+.+.|++++|++++..+++.++..++.+|.++. .+
T Consensus 314 ~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~ 390 (434)
T d1q1sc_ 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 390 (434)
T ss_dssp TCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhccChHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999987653 567788999999999999999999888888888888774 23
Q ss_pred CCCh----HHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 610 VPDS----EDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 610 ~~~~----~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
.++. ..+.+.|++..++ . +|++.+++++..|...+|.|++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~i~------~-L~~~~n~~i~~~a~~il~~~f~ 434 (434)
T d1q1sc_ 391 LGETEKLSIMIEECGGLDKIE------A-LQRHENESVYKASLNLIEKYFS 434 (434)
T ss_dssp TTCHHHHHHHHHHTTSHHHHH------H-HHTCSSHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHHcCCHHHHH------H-HHcCCCHHHHHHHHHHHHHHhC
Confidence 4433 3466778888776 3 4788999999999999999985
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.4e-29 Score=278.63 Aligned_cols=460 Identities=15% Similarity=0.105 Sum_probs=326.3
Q ss_pred HHHHHHHHHHHHhhhcCcccccceecccccHHHHHHHHHhhhc------chHHHHhhccccCCCCccccCCCCcccchhh
Q 037612 71 QVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIG------DVSWLLRVSASAEDRDDEYLGLPPIAANEPI 144 (663)
Q Consensus 71 ~tl~~a~~l~~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~~~~------~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i 144 (663)
....+|...+..+.++...++.+ +...+.++.++..|..... ....|.+++.+.+.+. .+...+.+
T Consensus 32 ~v~~~A~~~l~~l~~~~~~~~~~-~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~-------~i~~~g~i 103 (529)
T d1jdha_ 32 VVVNKAAVMVHQLSKKEASRHAI-MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-------AIFKSGGI 103 (529)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHH-HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH-------HHHHTTHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHH-HHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH-------HHHHCCCH
Confidence 34455555555554443333322 2234568888888854321 1344445544322211 11112222
Q ss_pred HhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcch
Q 037612 145 LCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESV 223 (663)
Q Consensus 145 ~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~ 223 (663)
..++..|+. ++.+.+.+|+++|.+|+.+++..++.+.+.|+||+|+.+|+++++..|+.|+++|.+|+. +++++
T Consensus 104 ----~~Li~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 178 (529)
T d1jdha_ 104 ----PALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp ----HHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----HHHHHHhCC-CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHH
Confidence 223888999 999999999999999999988889999999999999999999999999999999999996 56778
Q ss_pred HHHHHcCchHHHHHhhccCC-hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 224 EHMIHSGVCLVFAKILKEGP-MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~-~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
..+++.|++++|+.+|++++ +.++..+++++.+++. +++.+..+.+.|++++|+.++.+++.... .. .+.
T Consensus 179 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~-~~-------a~~ 249 (529)
T d1jdha_ 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLV-QN-------CLW 249 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHH-HH-------HHH
T ss_pred HHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhh-hh-------hhh
Confidence 88899999999999997654 6789999999999996 57889999999999999999987642110 00 111
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
++........ .. . .+..++.
T Consensus 250 ~l~~ls~~~~--------~~-~---------------------~~~~~i~------------------------------ 269 (529)
T d1jdha_ 250 TLRNLSDAAT--------KQ-E---------------------GMEGLLG------------------------------ 269 (529)
T ss_dssp HHHHHHTTCT--------TC-S---------------------CCHHHHH------------------------------
T ss_pred HHHhcccccc--------ch-h---------------------hhhhcch------------------------------
Confidence 1111111000 00 0 0000000
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh--cCChh
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE--KGPED 460 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~--~~~~~ 460 (663)
.+... .+.+|+ .++..|+.+|++|+.++..++..+.+.+++..|+.++. +..++
T Consensus 270 ----------~Lv~l----------l~~~~~----~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~ 325 (529)
T d1jdha_ 270 ----------TLVQL----------LGSDDI----NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp ----------HHHHH----------TTCSCH----HHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred ----------hhhhh----------cccccH----HHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchh
Confidence 01100 112344 36889999999999999999999999999999999885 45678
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhh----HhhccH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKA----TETRMI 535 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~----~e~~~I 535 (663)
++..++++|++++.........+... . ..+.++.|++++..++ ..++..++.+|++++....+ .+.++|
T Consensus 326 ~~~~a~~aL~~l~~~~~~~~~~~~~i-~-----~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i 399 (529)
T d1jdha_ 326 ITEPAICALRHLTSRHQEAEMAQNAV-R-----LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 399 (529)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHH-H-----HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHH
T ss_pred HHHHHHHHhhcccchhhcchhhhhhH-H-----hcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccH
Confidence 99999999999986655443444321 1 1346788999998766 35777888899999887654 346899
Q ss_pred HHHHHhcccCCHH----------------------HHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCCh
Q 037612 536 VPLVKLLDEREAE----------------------VSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQ 593 (663)
Q Consensus 536 ~pLV~LL~~~~~~----------------------v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~ 593 (663)
+.|+++|.+.+.+ +.+..+.+|.+++.. +++...+.+.||+++|+++|+++++
T Consensus 400 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~-----~~~r~~~~~~~~i~~Lv~lL~~~~~ 474 (529)
T d1jdha_ 400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-----VHNRIVIRGLNTIPLFVQLLYSPIE 474 (529)
T ss_dssp HHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-----HHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccC-----HHHHHHHHHCCCHHHHHHHhCCCCH
Confidence 9999999765544 455566677777632 3556678899999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHH
Q 037612 594 IVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651 (663)
Q Consensus 594 ~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~l 651 (663)
.+|..|+.+|++++.+....+.|.++|+++.|..-.. -+++.++.-+..++.+|
T Consensus 475 ~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~----s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 475 NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH----SRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG----CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhC----CCCHHHHHHHHHHHHHh
Confidence 8999999999999887777788999999999984221 13445555666665554
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.6e-29 Score=270.64 Aligned_cols=402 Identities=16% Similarity=0.180 Sum_probs=306.9
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcchH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLAR-DNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESVE 224 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~~ 224 (663)
+.+++..+++ ++.+.+..|...+..+.. .+....+.+++.|+||+|+.+|++. ++.+|..|+|+|.||+. ++..+.
T Consensus 78 l~~~~~~~~s-~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~ 156 (503)
T d1wa5b_ 78 LPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 156 (503)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3445778889 999999999999998754 3344577899999999999999876 57899999999999996 556788
Q ss_pred HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHH
Q 037612 225 HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAV 304 (663)
Q Consensus 225 ~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~l 304 (663)
.+++.|++|.|+.+|.+++.+++..++|+|+||+..+++.|..+.+.|++++|+.++.+..... . +.+
T Consensus 157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~-~-----------~~~ 224 (503)
T d1wa5b_ 157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL-I-----------RTA 224 (503)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHH-H-----------HHH
T ss_pred HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHH-H-----------HHH
Confidence 8889999999999999999999999999999999988999999999999999999998664211 0 111
Q ss_pred HHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCc
Q 037612 305 VVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDN 384 (663)
Q Consensus 305 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~ 384 (663)
.++..+.+. +.... .....+ .+..+
T Consensus 225 ~~~l~nl~~---~~~~~------------------------~~~~~~----------------------------~~~l~ 249 (503)
T d1wa5b_ 225 TWTLSNLCR---GKKPQ------------------------PDWSVV----------------------------SQALP 249 (503)
T ss_dssp HHHHHHHHC---CSSSC------------------------CCHHHH----------------------------GGGHH
T ss_pred HHHHHHHhc---CCccc------------------------hHHHHH----------------------------HHHHH
Confidence 111111110 00000 000000 00000
Q ss_pred cccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHH
Q 037612 385 NVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYN 464 (663)
Q Consensus 385 ~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~ 464 (663)
.+.. .....|++ .+..|+.+|.+++.++......+.+.|+++.|+.++++++..++..
T Consensus 250 --------~l~~----------~l~~~d~~----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~ 307 (503)
T d1wa5b_ 250 --------TLAK----------LIYSMDTE----TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 307 (503)
T ss_dssp --------HHHH----------HTTCCCHH----HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred --------HHHH----------HhccccHH----HHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhh
Confidence 0000 01123543 5888999999999998888889999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----HhhccHHHHH
Q 037612 465 SAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRMIVPLV 539 (663)
Q Consensus 465 aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pLV 539 (663)
++++|.+|+.... +.....+. .++++.|..++.+.++.++..++.+|++++..... .+.+++++++
T Consensus 308 al~~l~nl~~~~~---~~~~~~~~------~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li 378 (503)
T d1wa5b_ 308 ALRAVGNIVTGND---LQTQVVIN------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 378 (503)
T ss_dssp HHHHHHHHTTSCH---HHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHhhhc------cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhH
Confidence 9999999975533 32222111 35788899999999999999999999999764332 3568999999
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC---------
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV--------- 610 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~--------- 610 (663)
++|.+.+++++++|+|+|.|++.++.. +.+....+++.|++++|+.+|...++.+...++.+|.++....
T Consensus 379 ~~l~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~ 457 (503)
T d1wa5b_ 379 KLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL 457 (503)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcccCChhHHHHHHHHHHHHHhcccc-cHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999865432 3566788999999999999999998877778888888874210
Q ss_pred ---CChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 611 ---PDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 611 ---~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
+....+.+.|++..++ ..|.+.+++++.+|..+++.|+.
T Consensus 458 ~~~~~~~~iee~g~~~~i~-------~Lq~~~~~~i~~~A~~il~~~f~ 499 (503)
T d1wa5b_ 458 NINENADFIEKAGGMEKIF-------NCQQNENDKIYEKAYKIIETYFG 499 (503)
T ss_dssp SSCHHHHHHHHTTHHHHHH-------GGGGCSCHHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHHCCCHHHHH-------HHHcCCCHHHHHHHHHHHHHHcC
Confidence 1123456667666665 35778899999999999999987
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.4e-29 Score=278.70 Aligned_cols=331 Identities=16% Similarity=0.156 Sum_probs=280.8
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHhhcc-CChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLKLVKE-GKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~LL~s-g~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
.|+.+|+. ++.+.|.+|+..|.+|+.. +..+..++.. |+||+|+++|+. +++..++.|+++|.+|+.+++++..|+
T Consensus 21 ~L~~lL~~-~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 98 (529)
T d1jdha_ 21 ELTKLLND-EDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98 (529)
T ss_dssp HHHHHHTC-SCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 34889999 9999999999999999976 5566666654 689999999986 468999999999999999999999999
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
+.|+||+|+++|++++++++..|+++|+||+.+++..|..+.+.|+||+|+.+|++++
T Consensus 99 ~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~---------------------- 156 (529)
T d1jdha_ 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN---------------------- 156 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC----------------------
T ss_pred HCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccC----------------------
Confidence 9999999999999999999999999999999888889999999999999999996432
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
T Consensus 157 -------------------------------------------------------------------------------- 156 (529)
T d1jdha_ 157 -------------------------------------------------------------------------------- 156 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCC-hhHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP-EDVQYNSA 466 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~-~~vq~~aa 466 (663)
+ +.+..|+.+|++|+.++......+.+.|++++|+.+++..+ +.++..++
T Consensus 157 -------------------------~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 207 (529)
T d1jdha_ 157 -------------------------V----KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 207 (529)
T ss_dssp -------------------------H----HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred -------------------------h----HHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHH
Confidence 0 24667889999999999999999999999999999998654 68999999
Q ss_pred HHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--hccHHHHHHhccc
Q 037612 467 MALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--TRMIVPLVKLLDE 544 (663)
Q Consensus 467 ~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~~~I~pLV~LL~~ 544 (663)
+++++++...+ .++..+ ..++++.|++++.+++++++..++.++.+++....... .++|++|+++|++
T Consensus 208 ~~l~~ls~~~~----~~~~~~------~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~ 277 (529)
T d1jdha_ 208 RVLKVLSVCSS----NKPAIV------EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS 277 (529)
T ss_dssp HHHHHHTTSTT----HHHHHH------HTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC
T ss_pred HHHhhhhcccc----ccchhh------hhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhccc
Confidence 99999975443 333211 13578999999999999999999999999987655432 4689999999999
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc--CChhHHHHHHHHHHHHhcCCCChH----HHHh
Q 037612 545 REAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF--GEQIVQLSALVLLCYIALHVPDSE----DLAQ 618 (663)
Q Consensus 545 ~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~--~~~~~q~~Al~~L~~la~~~~~~~----~i~~ 618 (663)
.+++++..|+++|.++++++ .++...+.+.||+++|++++.. +.+.+|..|+.+|++++.+..+.+ .+.+
T Consensus 278 ~~~~~~~~a~~~L~~l~~~~----~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~ 353 (529)
T d1jdha_ 278 DDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccch----hHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHh
Confidence 99999999999999998654 5777889999999999998753 455578889999999987766643 4667
Q ss_pred ccchhhhhh
Q 037612 619 AEVLTVLEW 627 (663)
Q Consensus 619 ~~vl~~L~~ 627 (663)
.++++.|..
T Consensus 354 ~~~l~~L~~ 362 (529)
T d1jdha_ 354 HYGLPVVVK 362 (529)
T ss_dssp TTCHHHHHH
T ss_pred cccchhHHH
Confidence 788888863
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1.1e-24 Score=231.36 Aligned_cols=395 Identities=17% Similarity=0.192 Sum_probs=262.4
Q ss_pred ccccHHHHHHHHHhhhcc-----hHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSIGD-----VSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASL 171 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L 171 (663)
....++.++..|.+.+.+ +..+-++.....+...+ .+...+ .+..|+..|+...+.+.|..|+++|
T Consensus 11 ~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~-----~i~~~g----~i~~Lv~lL~~~~~~~v~~~a~~~L 81 (434)
T d1q1sc_ 11 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID-----NIIRAG----LIPKFVSFLGKTDCSPIQFESAWAL 81 (434)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHH-----HHHHTT----CHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHH-----HHHHCC----CHHHHHHHHccCCCHHHHHHHHHHH
Confidence 346789999999765433 44444443322222100 001111 2233478886514678999999999
Q ss_pred HHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHHHHHhhccCCh-----h
Q 037612 172 VSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPM-----K 245 (663)
Q Consensus 172 ~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~-----~ 245 (663)
.+++..+++++..+++.|+||+|+.+|.++++..++.|+++|+||+.+ ++.+..+.+.|+++.|+.+|...+. .
T Consensus 82 ~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~ 161 (434)
T d1q1sc_ 82 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 161 (434)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred HHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHH
Confidence 999988888999999999999999999999999999999999999975 5667778899999999999976542 3
Q ss_pred HHHHHHHHHHHHhcCChh-----HHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCC
Q 037612 246 VQAVVAWAVSELAGNYPK-----CQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSN 320 (663)
Q Consensus 246 vq~~Aa~aL~nLA~~~~~-----~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~ 320 (663)
....++|++.+++.+.+. ....+.. .+..++.- .....+.+..+ .++.+. ...
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~--~l~~ll~~-~~~~~~~~a~~-------~l~~l~---~~~--------- 219 (434)
T d1q1sc_ 162 YLRNLTWTLSNLCRNKNPAPPLDAVEQILP--TLVRLLHH-NDPEVLADSCW-------AISYLT---DGP--------- 219 (434)
T ss_dssp HHHHHHHHHHHHTCCCTTCCCHHHHHHHHH--HHHHHTTC-SCHHHHHHHHH-------HHHHHT---SSC---------
T ss_pred HHHHHHHHHHHHhhcccccchhhhhhhHHH--HHHHHHhc-cccchhhhHHh-------hhcccc---hhh---------
Confidence 456788999999864321 1111110 11111111 01111111100 011000 000
Q ss_pred CccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccc
Q 037612 321 NKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSN 400 (663)
Q Consensus 321 ~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~ 400 (663)
.+ ....+. ..++. + .+...+
T Consensus 220 -----~~-------------------~~~~~~-------------------------~~~~~-~--------~Lv~ll-- 239 (434)
T d1q1sc_ 220 -----NE-------------------RIEMVV-------------------------KKGVV-P--------QLVKLL-- 239 (434)
T ss_dssp -----HH-------------------HHHHHH-------------------------TTTCH-H--------HHHHHH--
T ss_pred -----hh-------------------hHHHHh-------------------------hcccc-h--------hccccc--
Confidence 00 000000 00000 0 000000
Q ss_pred cCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccH
Q 037612 401 YGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDA 480 (663)
Q Consensus 401 ~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~ 480 (663)
..+++ +++..|+++|.+++.+++..+..+.+.|++.+|..+|++.+++++.+++++|++++...+
T Consensus 240 --------~~~~~----~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--- 304 (434)
T d1q1sc_ 240 --------GATEL----PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ--- 304 (434)
T ss_dssp --------TCSCH----HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCH---
T ss_pred --------ccchh----hhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccc---
Confidence 01233 468899999999999999999999999999999999999999999999999999976433
Q ss_pred HHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh------HhhccHHHHHHhcccCCHHHHHHHH
Q 037612 481 ELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA------TETRMIVPLVKLLDEREAEVSREAS 554 (663)
Q Consensus 481 ~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~------~e~~~I~pLV~LL~~~~~~v~~eAa 554 (663)
+.+...+. .++++.++.++.+.+++++..|+.+|++++..... .+.++|++|+++|+..++++...+.
T Consensus 305 ~~~~~i~~------~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l 378 (434)
T d1q1sc_ 305 DQIQQVVN------HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 378 (434)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred hhHHHHhh------hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHH
Confidence 33322111 34688899999999999999999999999875332 3568999999999999999999999
Q ss_pred HHHHhcccCC-CCCChh-hHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 555 IALTKFACSD-NYLHSD-HSKAIISAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 555 ~AL~~la~~~-~~~~~~-~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
++|.++.... .....+ -...+.+.||++.|-.|..+.++.++..|...|
T Consensus 379 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il 429 (434)
T d1q1sc_ 379 DAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429 (434)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999885211 111122 234577899999887777777777777777766
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.5e-25 Score=233.64 Aligned_cols=379 Identities=14% Similarity=0.104 Sum_probs=251.5
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhc-CCCcchHHHHHc
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLG-RDPESVEHMIHS 229 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs-~~~~~~~~iv~a 229 (663)
+|..|++ ++++.|..||++|.+|+.+++++|+.|.+.||||+|+++|+++++.+|+.|+++|.||+ .+++++..+.+.
T Consensus 7 lv~~L~~-~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~ 85 (457)
T d1xm9a1 7 AVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 5899999 99999999999999999988999999999999999999999999999999999999999 567899999999
Q ss_pred CchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 230 GVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 230 GaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
|+|+.|++++.+ .+++++..++++|.+++... ..+..+... ++++++..+... +..+.. .... .
T Consensus 86 g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~-~~~~l~~~~~~~----~~~~~~-------~~~~-~- 150 (457)
T d1xm9a1 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIAD-ALPVLADRVIIP----FSGWCD-------GNSN-M- 150 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHH-HHHHHHHHTTHH----HHTCC---------------
T ss_pred CChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh-hhHHHHHhc-ccHHHHHHHHhh----hhhhhc-------chhh-h-
Confidence 999999999965 67889999999999999754 555555554 456666555321 100000 0000 0
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
........+...++.... + .....
T Consensus 151 ---------------------------------~~~~~~~~v~~~a~~~l~---------~--------~~~~~------ 174 (457)
T d1xm9a1 151 ---------------------------------SREVVDPEVFFNATGCLR---------N--------LSSAD------ 174 (457)
T ss_dssp ------------------------------------CCCHHHHHHHHHHHH---------H--------HTTSH------
T ss_pred ---------------------------------hcccccHHHHHHHHHHHH---------H--------HhcCc------
Confidence 000001122222221110 0 00000
Q ss_pred cccccccccccccCCcCCCCccCChhHHH-----HHHHHHHHHHHHHh--------------------------------
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKA-----YMKAMAARALWHLA-------------------------------- 431 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~-----~lk~~Aa~AL~~La-------------------------------- 431 (663)
..........|.+....++-...... .....+...+.+..
T Consensus 175 ---~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (457)
T d1xm9a1 175 ---AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFS 251 (457)
T ss_dssp ---HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------------
T ss_pred ---hHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhh
Confidence 00001111112211000000000000 00000111111100
Q ss_pred ------------------cCChhhhHHHhhhccHHHHHHHhhcC-ChhHHHHHHHHHHHHhhhhhcc-HHHHhhhcCCCC
Q 037612 432 ------------------KGNSPICRSITESRALLCFAVLLEKG-PEDVQYNSAMALMEITAVAEKD-AELRRSAFKPNA 491 (663)
Q Consensus 432 ------------------~gn~~~~~~I~esgal~~L~~LL~~~-~~~vq~~aa~AL~~i~a~a~~~-~~~rr~a~~~~~ 491 (663)
..+......+.+.++++.|..++.+. +++++..+++++..++...... ...++..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-- 329 (457)
T d1xm9a1 252 NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK-- 329 (457)
T ss_dssp --------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT--
T ss_pred hhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHH--
Confidence 02223334455667788888888754 6789999999999987554332 2333322221
Q ss_pred chhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh---hccHHHHHHhccc------CCHHHHHHHHHHHHhccc
Q 037612 492 PACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE---TRMIVPLVKLLDE------REAEVSREASIALTKFAC 562 (663)
Q Consensus 492 ~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e---~~~I~pLV~LL~~------~~~~v~~eAa~AL~~la~ 562 (663)
.++++.|++++.+.+++++..++.+|++|+.+....+ .++|++|+.+|.. .+.+++.+|+.+|.|++.
T Consensus 330 ---~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~ 406 (457)
T d1xm9a1 330 ---EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA 406 (457)
T ss_dssp ---SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT
T ss_pred ---cCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhc
Confidence 2467889999999999999999999999998766543 4689999999943 346789999999999985
Q ss_pred CCCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCCh
Q 037612 563 SDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLLCYIALHVPDS 613 (663)
Q Consensus 563 ~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L~~la~~~~~~ 613 (663)
.. +++.+.+++.||+++|++++++. ++.++..|..+|++|+.|.+-+
T Consensus 407 ~~----~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~ 454 (457)
T d1xm9a1 407 SQ----PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp TC----THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred CC----HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence 53 57888999999999999999875 6667888999999997665543
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=9.5e-24 Score=230.61 Aligned_cols=356 Identities=19% Similarity=0.257 Sum_probs=280.3
Q ss_pred ecccccHHHHHHHHHhhh-c----chHH-HHhhccccCCCC--c-cccCCCCcccchhhHhHHHHHHHHhccCCCHHHHH
Q 037612 95 IIPAAAFRKMSSQLENSI-G----DVSW-LLRVSASAEDRD--D-EYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKS 165 (663)
Q Consensus 95 i~~~~~l~~l~~~L~~~~-~----~~~~-ll~~s~~~~~~~--~-~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~ 165 (663)
+...|.++.|+..|.... . ...| |.+++....... . ..+++|. ++..|++ ++.+.+.
T Consensus 115 ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~-------------l~~lL~s-~~~~i~~ 180 (503)
T d1wa5b_ 115 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL-------------FIQLLYT-GSVEVKE 180 (503)
T ss_dssp HHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH-------------HHHHHHH-CCHHHHH
T ss_pred HHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHH-------------HHHHhcC-CChhHHH
Confidence 346889999999985421 1 1333 334443221110 0 1112222 3778899 9999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cchHHHHHcCchHHHHHhhccCCh
Q 037612 166 DAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ESVEHMIHSGVCLVFAKILKEGPM 244 (663)
Q Consensus 166 ~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~~~~iv~aGaIp~Lv~lL~s~~~ 244 (663)
.|+++|++|+.+++.++..+.+.|++++|+.++.+.+...++.++|+|.||+.+. .........|++|.|++++.+.++
T Consensus 181 ~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~ 260 (503)
T d1wa5b_ 181 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 260 (503)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccH
Confidence 9999999999988999999999999999999999999999999999999999754 445555678999999999999999
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccc
Q 037612 245 KVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVI 324 (663)
Q Consensus 245 ~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i 324 (663)
+++..++|+|.+|+..+++....+.+.|+++.|+.++.++.
T Consensus 261 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--------------------------------------- 301 (503)
T d1wa5b_ 261 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES--------------------------------------- 301 (503)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC---------------------------------------
T ss_pred HHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCc---------------------------------------
Confidence 99999999999999888888889999999999999986432
Q ss_pred cchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCc
Q 037612 325 DDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGAN 404 (663)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 404 (663)
T Consensus 302 -------------------------------------------------------------------------------- 301 (503)
T d1wa5b_ 302 -------------------------------------------------------------------------------- 301 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHh
Q 037612 405 TKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRR 484 (663)
Q Consensus 405 ~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr 484 (663)
..++..|+.+|++++.+++..+..+.+.|++++|..++++.++++++.++|+|++|+++. ++...
T Consensus 302 ------------~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~---~~~~~ 366 (503)
T d1wa5b_ 302 ------------TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN---TEQIQ 366 (503)
T ss_dssp ------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---HHHHH
T ss_pred ------------hhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc---HHHHH
Confidence 013566789999999999999999999999999999999999999999999999997653 34333
Q ss_pred hhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh--------HhhccHHHHHHhcccCCHHHHHHHHHH
Q 037612 485 SAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA--------TETRMIVPLVKLLDEREAEVSREASIA 556 (663)
Q Consensus 485 ~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~--------~e~~~I~pLV~LL~~~~~~v~~eAa~A 556 (663)
..+. .++++.++.++.+.+.+++..|+.+|.+++..... .+.+++++|+++|+..+.++...+..+
T Consensus 367 ~i~~------~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~ 440 (503)
T d1wa5b_ 367 AVID------ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA 440 (503)
T ss_dssp HHHH------TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHH------ccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 2221 35788999999999999999999999999864321 246899999999999999999988888
Q ss_pred HHhcccCC-------CCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 037612 557 LTKFACSD-------NYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLC 604 (663)
Q Consensus 557 L~~la~~~-------~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 604 (663)
|.++..-+ .+........|.+.||++.|-.|..+++..+...|..+|-
T Consensus 441 l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~ 495 (503)
T d1wa5b_ 441 LENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 495 (503)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88764110 0001123446788999999888777788777777887773
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.6e-22 Score=208.74 Aligned_cols=296 Identities=15% Similarity=0.121 Sum_probs=212.7
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 189 GGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 189 G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
+.||+||++|+++++..|..|+++|.||+. +++++..|++.|+||+|+++|++++++++..|+++|.+|+..++++|..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 469999999999999999999999999995 7899999999999999999999999999999999999999888999999
Q ss_pred HHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccc
Q 037612 268 FAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQM 347 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~ 347 (663)
+.+.|+|+.|+.++.....
T Consensus 82 i~~~g~v~~li~~l~~~~~------------------------------------------------------------- 100 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGN------------------------------------------------------------- 100 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCC-------------------------------------------------------------
T ss_pred HHHCCChHHHHHHHhccCc-------------------------------------------------------------
Confidence 9999999999998864310
Q ss_pred hhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHH
Q 037612 348 HNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARAL 427 (663)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL 427 (663)
+ .++..|+.+|
T Consensus 101 -----------------------------------------------------------------~----~~~~~a~~~l 111 (457)
T d1xm9a1 101 -----------------------------------------------------------------A----EIQKQLTGLL 111 (457)
T ss_dssp -----------------------------------------------------------------H----HHHHHHHHHH
T ss_pred -----------------------------------------------------------------H----HHHHHHHHHH
Confidence 0 1234445555
Q ss_pred HHHhcCChhhhHHHhhhccHHHHHHH----------------hhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCC--
Q 037612 428 WHLAKGNSPICRSITESRALLCFAVL----------------LEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKP-- 489 (663)
Q Consensus 428 ~~La~gn~~~~~~I~esgal~~L~~L----------------L~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~-- 489 (663)
++|+... ......... +++.+... .+..+.+++.+++++|++++...+. ++..+..
T Consensus 112 ~~l~~~~-~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~----~~~~~~~~~ 185 (457)
T d1xm9a1 112 WNLSSTD-ELKEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG----RQTMRNYSG 185 (457)
T ss_dssp HHHHTSS-STHHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHH----HHHHTTSTT
T ss_pred HHHHhhh-hhHHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchH----HHHHHHHhc
Confidence 5555432 222222222 22222222 2344567777777777765432221 1100000
Q ss_pred --------------------------------------------------------------------------------
Q 037612 490 -------------------------------------------------------------------------------- 489 (663)
Q Consensus 490 -------------------------------------------------------------------------------- 489 (663)
T Consensus 186 ~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (457)
T d1xm9a1 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCP 265 (457)
T ss_dssp HHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------
T ss_pred cHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhh
Confidence
Q ss_pred -----------CCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhh----------HhhccHHHHHHhcccCCH
Q 037612 490 -----------NAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKA----------TETRMIVPLVKLLDEREA 547 (663)
Q Consensus 490 -----------~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~----------~e~~~I~pLV~LL~~~~~ 547 (663)
......++++.|+.++...+ ++.+..+..++.+++..... .+.++||+|+++|.+.++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~ 345 (457)
T d1xm9a1 266 LPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS 345 (457)
T ss_dssp CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCH
T ss_pred hHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccH
Confidence 00000124566667666554 56777888888888653221 235789999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC------ChhHHHHHHHHHHHHhcCCCC-hHHHHhcc
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG------EQIVQLSALVLLCYIALHVPD-SEDLAQAE 620 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~------~~~~q~~Al~~L~~la~~~~~-~~~i~~~~ 620 (663)
+++++++++|.+++.+ +++...|. .+|+++|+.+|... ++.++..|+.+|++++.+.++ ++.+.++|
T Consensus 346 ~v~~~a~~~l~~La~~-----~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g 419 (457)
T d1xm9a1 346 DVVRSGASLLSNMSRH-----PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS 419 (457)
T ss_dssp HHHHHHHHHHHHHHTS-----GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhhC-----hhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 9999999999999854 34555555 57999999998754 234677899999999866655 66799999
Q ss_pred chhhhh
Q 037612 621 VLTVLE 626 (663)
Q Consensus 621 vl~~L~ 626 (663)
+++.|.
T Consensus 420 ~i~~L~ 425 (457)
T d1xm9a1 420 MLNNII 425 (457)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 999997
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.4e-18 Score=173.47 Aligned_cols=185 Identities=15% Similarity=0.121 Sum_probs=165.8
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-hhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLK-LVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFA 236 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~-LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv 236 (663)
.+.+.|..|+.+|.+|+. +..++..+...||+++|+. +|.++++.++..|+++|++++. ++..+..+++.|+||+|+
T Consensus 29 ~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 29 ADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 577889999999999995 4678888999999999986 7788899999999999999997 567788899999999999
Q ss_pred Hhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccc
Q 037612 237 KILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNAN 315 (663)
Q Consensus 237 ~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~ 315 (663)
++|.+ .++.++..++++|.+|+.+++..+..+.+.|+++.|+.+|.+++
T Consensus 108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~------------------------------ 157 (264)
T d1xqra1 108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV------------------------------ 157 (264)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC------------------------------
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCc------------------------------
Confidence 99965 67899999999999999989999999999999999999996431
Q ss_pred cCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccccccc
Q 037612 316 ANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQ 395 (663)
Q Consensus 316 ~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~ 395 (663)
T Consensus 158 -------------------------------------------------------------------------------- 157 (264)
T d1xqra1 158 -------------------------------------------------------------------------------- 157 (264)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 037612 396 HGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAV 475 (663)
Q Consensus 396 ~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~ 475 (663)
..++..|+.+|++|+.+++.+...+.+.|+++.|+.+|+++++++|..+++||++|+..
T Consensus 158 ---------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 158 ---------------------QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred ---------------------hHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 02466788999999999999999999999999999999999999999999999999743
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5.9e-18 Score=170.58 Aligned_cols=192 Identities=12% Similarity=0.111 Sum_probs=163.8
Q ss_pred HhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHH-hhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcH
Q 037612 196 KLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAK-ILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNII 274 (663)
Q Consensus 196 ~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~-lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I 274 (663)
....+.+...++.|..+|.+|+.+.+++..++..||+++|+. +|++++++++..|+++|++++.+++..+..+.+.|+|
T Consensus 24 ~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i 103 (264)
T d1xqra1 24 EAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 103 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 334455678899999999999999999999999999999986 7788999999999999999999899999999999999
Q ss_pred HHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhh
Q 037612 275 RLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNT 354 (663)
Q Consensus 275 ~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 354 (663)
|+|+.+|.+++
T Consensus 104 ~~Lv~lL~~~~--------------------------------------------------------------------- 114 (264)
T d1xqra1 104 RKLLRLLDRDA--------------------------------------------------------------------- 114 (264)
T ss_dssp HHHHHHHHHCS---------------------------------------------------------------------
T ss_pred HHHHHHhhcCC---------------------------------------------------------------------
Confidence 99999995331
Q ss_pred hhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCC
Q 037612 355 MAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGN 434 (663)
Q Consensus 355 ~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn 434 (663)
++ .++..|+.||+++++++
T Consensus 115 ---------------------------------------------------------~~----~v~~~a~~aL~~l~~~~ 133 (264)
T d1xqra1 115 ---------------------------------------------------------CD----TVRVKALFAISCLVREQ 133 (264)
T ss_dssp ---------------------------------------------------------CH----HHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------------------------------CH----HHHHHHHHHHHHHhccc
Confidence 11 24778999999999999
Q ss_pred hhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhh
Q 037612 435 SPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLI 514 (663)
Q Consensus 435 ~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~ 514 (663)
+.++..+.+.|+++.|+.+|++++.+++.+++++|++++.....+ +.. +
T Consensus 134 ~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~~-----------~----------------- 182 (264)
T d1xqra1 134 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH---KGT-----------L----------------- 182 (264)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHH-----------H-----------------
T ss_pred hhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHH---HHH-----------H-----------------
Confidence 999999999999999999999999999999999999997553321 110 0
Q ss_pred HHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccC
Q 037612 515 PCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACS 563 (663)
Q Consensus 515 ~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~ 563 (663)
.+.+++|+|+.+|.+.++++++.|++||.+++..
T Consensus 183 ---------------~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 183 ---------------CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp ---------------HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred ---------------HHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 1247899999999999999999999999999743
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.7e-08 Score=108.44 Aligned_cols=333 Identities=14% Similarity=0.114 Sum_probs=221.2
Q ss_pred HHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC--CCcchHHHHHcC
Q 037612 153 AILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR--DPESVEHMIHSG 230 (663)
Q Consensus 153 ~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~--~~~~~~~iv~aG 230 (663)
..++. .+...|..++.+|+.++..- ...+.....+|.+..+++..++.++..|+.+|..++. ..+......-.-
T Consensus 249 ~~~~D-~~~~Vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~ 324 (588)
T d1b3ua_ 249 QAAED-KSWRVRYMVADKFTELQKAV---GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324 (588)
T ss_dssp HHHTC-SSHHHHHHHHHTHHHHHHHH---CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHT
T ss_pred Hhccc-ccHHHHHHHHHhHHHHHHHh---hhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 34556 67888888888888887431 1223345678999999998889999999999999884 344445555566
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcc
Q 037612 231 VCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNK 310 (663)
Q Consensus 231 aIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~ 310 (663)
.+|.+...+.+.++.++..++.++..++..-. ... .....+|.+..+|+.... . +
T Consensus 325 i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~--~~~-~~~~l~p~l~~~l~d~~~--~----v---------------- 379 (588)
T d1b3ua_ 325 ILPCIKELVSDANQHVKSALASVIMGLSPILG--KDN-TIEHLLPLFLAQLKDECP--E----V---------------- 379 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HHH-HHHHTHHHHHHHHTCSCH--H----H----------------
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHhhhhhccc--hhH-HHHHHHHHHHHHHHhhhh--h----h----------------
Confidence 88999999999889999999888888764211 111 122356777777764320 0 0
Q ss_pred cCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccc
Q 037612 311 TNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNH 390 (663)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~ 390 (663)
T Consensus 380 -------------------------------------------------------------------------------- 379 (588)
T d1b3ua_ 380 -------------------------------------------------------------------------------- 379 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhc--CChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHH
Q 037612 391 QSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAK--GNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMA 468 (663)
Q Consensus 391 ~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~--gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~A 468 (663)
+..+..++..+.. |.... ...-++.|..++++.+..++..++.+
T Consensus 380 -----------------------------~~~~~~~l~~~~~~~~~~~~-----~~~ll~~l~~~~~d~~~~~r~~~~~~ 425 (588)
T d1b3ua_ 380 -----------------------------RLNIISNLDCVNEVIGIRQL-----SQSLLPAIVELAEDAKWRVRLAIIEY 425 (588)
T ss_dssp -----------------------------HHHHHTTCHHHHHHSCHHHH-----HHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred -----------------------------hhHHHHHHHHHHhhcchhhh-----hhHHHHHHHHHHhcccHHHHHHHHHH
Confidence 0001111111100 00000 01235677788888888999999999
Q ss_pred HHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH--hhccHHHHHHhcccCC
Q 037612 469 LMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT--ETRMIVPLVKLLDERE 546 (663)
Q Consensus 469 L~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~--e~~~I~pLV~LL~~~~ 546 (663)
+..++..-..+ .|. ..+.+.++.++.+....++..++.+|+.|+..+... ...++|.+++++.+.+
T Consensus 426 l~~l~~~~~~~------~~~------~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 493 (588)
T d1b3ua_ 426 MPLLAGQLGVE------FFD------EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 493 (588)
T ss_dssp HHHHHHHHCGG------GCC------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSC
T ss_pred HHHHHHHcChH------hHH------HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC
Confidence 88876332110 111 235566777887777788899999999998877653 2458899999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhh
Q 037612 547 AEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLE 626 (663)
Q Consensus 547 ~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~ 626 (663)
..++..++.++..+...- ........-++.|++++..+.+.++..++.+|.++....++. ..+..+.|.++
T Consensus 494 ~~~R~~~~~~l~~l~~~~-------~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~ 564 (588)
T d1b3ua_ 494 YLHRMTTLFCINVLSEVC-------GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILE 564 (588)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-------ChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH--hHHHHHHHHHH
Confidence 999999999988885210 112234457889999999988888988999999987665442 23455667776
Q ss_pred hccccccccccCCcHHHHHHHHHHHHh
Q 037612 627 WTSKQSHMTQDETVDPLLQDAKSRLEL 653 (663)
Q Consensus 627 ~~~~~~~~~q~~~~~~l~~~a~~~le~ 653 (663)
- .. .-.+.+++..+.+|+..|++
T Consensus 565 ~-L~---~D~d~dVr~~A~~al~~l~~ 587 (588)
T d1b3ua_ 565 K-LT---QDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp H-HT---TCSSHHHHHHHHHHHHHTTC
T ss_pred H-Hc---CCCCHHHHHHHHHHHHHHhc
Confidence 2 11 11344688999999988764
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=9.4e-08 Score=93.05 Aligned_cols=95 Identities=11% Similarity=0.063 Sum_probs=74.0
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHc
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHS 229 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~a 229 (663)
.|+..|+. ++...|..|+..|+.+.. + .++|.|+++|++.++.++..|+.+|..+.........+
T Consensus 23 ~L~~~L~d-~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~--- 87 (276)
T d1oyza_ 23 ELFRLLDD-HNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV--- 87 (276)
T ss_dssp HHHHHTTC-SSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH---
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch---
Confidence 46888999 999999999999988632 2 35899999999989999999999999998654444333
Q ss_pred CchHHHH-HhhccCChhHHHHHHHHHHHHhcCC
Q 037612 230 GVCLVFA-KILKEGPMKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 230 GaIp~Lv-~lL~s~~~~vq~~Aa~aL~nLA~~~ 261 (663)
++.|. .++++.++.++..++.+|.++....
T Consensus 88 --~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~ 118 (276)
T d1oyza_ 88 --FNILNNMALNDKSACVRATAIESTAQRCKKN 118 (276)
T ss_dssp --HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHhcCCChhHHHHHHHHHHHHcccc
Confidence 33344 4457788999999999999987543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.6e-07 Score=102.06 Aligned_cols=308 Identities=12% Similarity=0.082 Sum_probs=196.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcC--ChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC---CCcch
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARD--NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR---DPESV 223 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~--~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~---~~~~~ 223 (663)
-.++.-|++ .+...|..|+..|..++.. .++.+ ...||-|.++++. +.+.+..++..|.++.. .+++.
T Consensus 13 ~~l~~~l~~-~~~~~R~~a~~~l~~ia~~lg~~~~~-----~~lip~l~~~~~~-~~ev~~~~~~~l~~~~~~~~~~~~~ 85 (588)
T d1b3ua_ 13 AVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTR-----SELLPFLTDTIYD-EDEVLLALAEQLGTFTTLVGGPEYV 85 (588)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHH-----HTHHHHHHHTCCC-CHHHHHHHHHHHTTCSGGGTSGGGG
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCcHhhH-----HHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCChhHH
Confidence 335788999 9999999999999988753 22222 3468999998865 44677777788887763 23332
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHA 303 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~ 303 (663)
...+|+|..++.+.++.|+..|+.+|..++...+.. .+ +.-.+|.+..|..+....
T Consensus 86 -----~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~--~~-~~~l~p~i~~L~~~~~~~---------------- 141 (588)
T d1b3ua_ 86 -----HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--DL-EAHFVPLVKRLAGGDWFT---------------- 141 (588)
T ss_dssp -----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HH-HHTHHHHHHHHHTCSSHH----------------
T ss_pred -----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH--HH-HHHHHHHHHHHhcccchH----------------
Confidence 335788888888888999999999999998643221 11 222344333444432100
Q ss_pred HHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCC
Q 037612 304 VVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQD 383 (663)
Q Consensus 304 lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~ 383 (663)
T Consensus 142 -------------------------------------------------------------------------------- 141 (588)
T d1b3ua_ 142 -------------------------------------------------------------------------------- 141 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC-ChhhhHHHhhhccHHHHHHHhhcCChhHH
Q 037612 384 NNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG-NSPICRSITESRALLCFAVLLEKGPEDVQ 462 (663)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g-n~~~~~~I~esgal~~L~~LL~~~~~~vq 462 (663)
.+..|+..+..++.. +..... ..++.+..|++..++.|+
T Consensus 142 -----------------------------------~r~~a~~ll~~~~~~~~~~~~~-----~l~~~~~~l~~D~~~~VR 181 (588)
T d1b3ua_ 142 -----------------------------------SRTSACGLFSVCYPRVSSAVKA-----ELRQYFRNLCSDDTPMVR 181 (588)
T ss_dssp -----------------------------------HHHHHGGGHHHHTTTSCHHHHH-----HHHHHHHHHHTCSCHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHhccCCHHHH
Confidence 000011111111110 001111 124566677788888999
Q ss_pred HHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH--hhccHHHHHH
Q 037612 463 YNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT--ETRMIVPLVK 540 (663)
Q Consensus 463 ~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~--e~~~I~pLV~ 540 (663)
..++.++.+++...+. +... ..+++.+..++++.++.++..++.+++.++..+... ...++|.+..
T Consensus 182 ~~a~~~l~~~~~~~~~--~~~~----------~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~ 249 (588)
T d1b3ua_ 182 RAAASKLGEFAKVLEL--DNVK----------SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ 249 (588)
T ss_dssp HHHHHHHHHHHHTSCH--HHHH----------HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHhcH--HHHH----------HHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 9999998888754431 1111 235566777887777888888888888888765543 3457888888
Q ss_pred hcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC--hHHHHh
Q 037612 541 LLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD--SEDLAQ 618 (663)
Q Consensus 541 LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~--~~~i~~ 618 (663)
++.+.+..|+..++.+|++++..- . ..+....-++.+..++..+++.++..|+..|..++...+. .....-
T Consensus 250 ~~~D~~~~Vr~~~~~~l~~l~~~~---~----~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~ 322 (588)
T d1b3ua_ 250 AAEDKSWRVRYMVADKFTELQKAV---G----PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322 (588)
T ss_dssp HHTCSSHHHHHHHHHTHHHHHHHH---C----HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred hcccccHHHHHHHHHhHHHHHHHh---h----hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 888888999999999998886321 1 1234445678888888888887888888888887755443 222222
Q ss_pred ccchhhhh
Q 037612 619 AEVLTVLE 626 (663)
Q Consensus 619 ~~vl~~L~ 626 (663)
..+++.+.
T Consensus 323 ~~i~~~l~ 330 (588)
T d1b3ua_ 323 SQILPCIK 330 (588)
T ss_dssp HTHHHHHH
T ss_pred HHHHHHHH
Confidence 34455443
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=4.3e-07 Score=88.15 Aligned_cols=255 Identities=15% Similarity=0.154 Sum_probs=150.8
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 188 EGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
....+.|+++|+++++.++..|+.+|..+.. ..++|.|+++|+++++.++..|+.+|..+.... .....
T Consensus 18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~-~~~~~ 86 (276)
T d1oyza_ 18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-KCEDN 86 (276)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-TTHHH
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-ccccc
Confidence 4567789999999999999999999988753 236899999999999999999999999997532 22121
Q ss_pred HHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccc
Q 037612 268 FAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQM 347 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~ 347 (663)
.++.|..++-.+.... + ...++.++-.+...... ..
T Consensus 87 -----~~~~l~~~~l~d~~~~-----v--r~~a~~aL~~~~~~~~~--------------------------------~~ 122 (276)
T d1oyza_ 87 -----VFNILNNMALNDKSAC-----V--RATAIESTAQRCKKNPI--------------------------------YS 122 (276)
T ss_dssp -----HHHHHHHHHHHCSCHH-----H--HHHHHHHHHHHHHHCGG--------------------------------GH
T ss_pred -----hHHHHHHHHhcCCChh-----H--HHHHHHHHHHHccccch--------------------------------hh
Confidence 2344555443221000 1 00011111111000000 00
Q ss_pred hhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHH
Q 037612 348 HNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARAL 427 (663)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL 427 (663)
..++ +.. . ....|+. ..++..|+.++
T Consensus 123 ~~~~-----------------------------------------~~l---~--------~~~~d~~--~~vr~~a~~~l 148 (276)
T d1oyza_ 123 PKIV-----------------------------------------EQS---Q--------ITAFDKS--TNVRRATAFAI 148 (276)
T ss_dssp HHHH-----------------------------------------HHH---H--------HHTTCSC--HHHHHHHHHHH
T ss_pred HHHH-----------------------------------------HHH---H--------HHhcCcc--hHHHHHHHHHH
Confidence 0000 000 0 0001211 13466677776
Q ss_pred HHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhh
Q 037612 428 WHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEK 507 (663)
Q Consensus 428 ~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~ 507 (663)
+.. .+...++.+..++......++..+..++..+.... ...++.++..+..
T Consensus 149 ~~~-----------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 199 (276)
T d1oyza_ 149 SVI-----------NDKATIPLLINLLKDPNGDVRNWAAFAININKYDN------------------SDIRDCFVEMLQD 199 (276)
T ss_dssp HTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC------------------HHHHHHHHHHTTC
T ss_pred hhc-----------chHHHHHHHHHhcccccchhhhhHHHHHHhhhccc------------------cccchhhhhhhhh
Confidence 532 23456777888888888888888777776553221 1123445666666
Q ss_pred cCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHH
Q 037612 508 ADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587 (663)
Q Consensus 508 ~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~L 587 (663)
.+..+...++.+++.+. ....+|+|++.|.+ ++|+..|+++|+.+.. .+.++.|..+
T Consensus 200 ~~~~~~~~~~~al~~~~------~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~---------------~~~~~~L~~~ 256 (276)
T d1oyza_ 200 KNEEVRIEAIIGLSYRK------DKRVLSVLCDELKK--NTVYDDIIEAAGELGD---------------KTLLPVLDTM 256 (276)
T ss_dssp SCHHHHHHHHHHHHHTT------CGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC---------------GGGHHHHHHH
T ss_pred hhhhhhhhhccccchhh------hhhhHHHHHHHhCC--hHHHHHHHHHHHHcCC---------------HHHHHHHHHH
Confidence 66677777777776553 24578888888864 3478888888888741 2367888887
Q ss_pred HhcC-ChhHHHHHHHHH
Q 037612 588 VYFG-EQIVQLSALVLL 603 (663)
Q Consensus 588 L~~~-~~~~q~~Al~~L 603 (663)
|+.. +..++..|+..|
T Consensus 257 l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 257 LYKFDDNEIITSAIDKL 273 (276)
T ss_dssp HTTSSCCHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHH
Confidence 7764 455666677765
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=0.00015 Score=82.61 Aligned_cols=374 Identities=14% Similarity=0.095 Sum_probs=204.4
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC--CCcch
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR--DPESV 223 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~--~~~~~ 223 (663)
++..++..|+. .+...|..|+++|+.++.... ...... -...++.|+..+.+.++.+|+.|++||.++.. .+.-.
T Consensus 437 li~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~ 514 (888)
T d1qbkb_ 437 LIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 514 (888)
T ss_dssp HHHHHHHHTTS-SCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred hhHHHHHhccC-CCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44567778888 899999999999998875211 111111 24678999999998899999999999999984 22222
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCC-hhH-HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNY-PKC-QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSI 301 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~-~~~-r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl 301 (663)
..+ ...++.|+..+.....+....+..++..++... +.. ...+. ...+|.++.....-.......+... ..+
T Consensus 515 p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~l---e~l 588 (888)
T d1qbkb_ 515 PYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLL---ECL 588 (888)
T ss_dssp GGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHH---HHH
T ss_pred hHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHH---HHH
Confidence 111 235677788887777677777777777776311 111 01111 1234555554432211111101000 011
Q ss_pred HHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccC
Q 037612 302 HAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNG 381 (663)
Q Consensus 302 ~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g 381 (663)
..++..... .+ .+-. .|+ .....+++....... +. ....
T Consensus 589 ~~i~~~~~~---------~~----------~~~~-~~~----~~~~~~~l~~~l~~~-----------~~-----~~~~- 627 (888)
T d1qbkb_ 589 SSVATALQS---------GF----------LPYC-EPV----YQRCVNLVQKTLAQA-----------ML-----NNAQ- 627 (888)
T ss_dssp HHHHHHSTT---------TT----------HHHH-HHH----HHHHHHHHHHHHHHH-----------HH-----HHHC-
T ss_pred HHHHHHhHH---------HH----------hhhH-HHH----HHHHHHHHHHHHHHH-----------HH-----Hhcc-
Confidence 111111000 00 0000 000 000000110000000 00 0000
Q ss_pred CCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHH-hhhccHHHHHHHhhcCChh
Q 037612 382 QDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSI-TESRALLCFAVLLEKGPED 460 (663)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I-~esgal~~L~~LL~~~~~~ 460 (663)
...-+..|. .....+...+..++.+........ ..+.-++.+...++...++
T Consensus 628 -----------------------~~~~~~~~~----~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~ 680 (888)
T d1qbkb_ 628 -----------------------PDQYEAPDK----DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE 680 (888)
T ss_dssp -----------------------TTTSCCCCT----HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred -----------------------cccccchhH----HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence 000011122 234455556666655433333332 2334455667778888899
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh----hccHH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE----TRMIV 536 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e----~~~I~ 536 (663)
++..+..++..|+...... | .|-....++.|+.-+.+....++..++.++|.|+......- ..+++
T Consensus 681 vr~~a~~llgdl~~~~~~~-------~---~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~ 750 (888)
T d1qbkb_ 681 VRQSSFALLGDLTKACFQH-------V---KPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLH 750 (888)
T ss_dssp HHHHHHHHHHHHHHHCGGG-------T---GGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHH-------H---HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999888887775432211 1 23344566666676766667788899999999987655321 25788
Q ss_pred HHHHhcccC--CHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCC
Q 037612 537 PLVKLLDER--EAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 537 pLV~LL~~~--~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L~~la~~~~ 611 (663)
.|+.+|++. ...+++.++.||+.++.. +++...- .=...+++++.-|... +..-+..|...+|.+....|
T Consensus 751 ~L~~il~~~~~~~~v~~n~~~~lgrl~~~----~p~~~~~-~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p 823 (888)
T d1qbkb_ 751 QLVEIINRPNTPKTLLENTAITIGRLGYV----CPQEVAP-MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 823 (888)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHH----CHHHHGG-GGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHcCCCccHHHHHHHHHHHHHHHHH----CHHHHHh-hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc
Confidence 999999654 455889999999999732 2322110 0134678888877664 44357789999999975544
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.90 E-value=3.1e-06 Score=72.35 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
.++.|++.+.+.++.++..++.+||.+.. ...+|+|+.+|.+.++.|+.+|++||+++...
T Consensus 23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~~------------- 83 (111)
T d1te4a_ 23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE------------- 83 (111)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH-------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcch------hhhHHHHHhhhccchhHHHHHHHHHHHHhCcc-------------
Confidence 46789999999999999999999987642 34799999999999999999999999998421
Q ss_pred HcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 577 SAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
+.++.|..++..+++.++..|+.+|
T Consensus 84 --~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 84 --RVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp --HHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred --chHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2477888999999988888888776
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=0.00064 Score=77.09 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=84.1
Q ss_pred hhHhHHHHHH-HHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC--C
Q 037612 143 PILCLIWEQV-AILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR--D 219 (663)
Q Consensus 143 ~i~~~v~~li-~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~--~ 219 (663)
.+.+.+..++ ..+++ .+...|+.|..+|+.++....+...-.+ ...+|.|+.+|++.++.++..|+|+|+.++. .
T Consensus 391 ~il~~~l~~l~~~l~s-~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 468 (888)
T d1qbkb_ 391 ELLPHILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 468 (888)
T ss_dssp SSHHHHHHHHHHTTTS-SSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhhcc-chhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444444444 46777 8899999999999999865432221111 2357889999998899999999999999984 2
Q ss_pred CcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 220 PESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 220 ~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
+...... -...++.+++.+.++++.|++.|++||.++..
T Consensus 469 ~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~ 507 (888)
T d1qbkb_ 469 SQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEE 507 (888)
T ss_dssp SSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2222222 34688999999999999999999999999985
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00025 Score=82.51 Aligned_cols=394 Identities=13% Similarity=0.125 Sum_probs=204.0
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCChh--hHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC--CcchHH
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSLARDNDR--YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD--PESVEH 225 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~La~~~~~--~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~~~~ 225 (663)
.++..++. .. .+..+..++..++..... .... . ...++.|...|...+...+..+..+|..|..+ +.....
T Consensus 611 ~l~~~l~~-~~--~r~~a~~~l~~i~~~~~~~~~~~~-l-~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~ 685 (1207)
T d1u6gc_ 611 IFLERLKN-EI--TRLTTVKALTLIAGSPLKIDLRPV-L-GEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAA 685 (1207)
T ss_dssp HHHHHTTS-SS--HHHHHHHHHHHHTTCSSCCCCHHH-H-HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHhcc-hh--hHHHHHHHHHHHHHhccchhHHHH-H-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhH
Confidence 34445544 33 466777777777653221 1222 2 24578899999988899999999999988742 222222
Q ss_pred HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
.+ ...++.+..++.+.+..++..+...|..++...++.... .....++.++.++.+...+.+...... ..+..++
T Consensus 686 ~~-~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~-~~~~il~~l~~~~~s~l~~~~~~~~~~---~~~~~l~ 760 (1207)
T d1u6gc_ 686 MI-DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK-ISGSILNELIGLVRSPLLQGGALSAML---DFFQALV 760 (1207)
T ss_dssp HH-HHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGG-TTTTTHHHHHHHHTCTTCCHHHHHHHH---HHHHHHH
T ss_pred HH-hhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhh-HHHHHHHHHHHHhcCchhhhhhHHHHH---HHHHHHH
Confidence 22 234555666777888889999999999999766654433 345688999999887644332211110 0111111
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCC----CCccchhhHHhhhhhhcCCCcccccccccccCccccccC
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNK----TPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNG 381 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g 381 (663)
..... . ... .+ -...+..+.... ...+....+..+.+... . ..+
T Consensus 761 ~~~~~-~------~~~----~~---l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~------------~------~~~ 808 (1207)
T d1u6gc_ 761 VTGTN-N------LGY----MD---LLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT------------R------ACP 808 (1207)
T ss_dssp TTCCT-T------CSH----HH---HHHHHSTTTTTC----CCHHHHHHHHHHHHHHH------------H------HSC
T ss_pred hcccc-c------cch----HH---HHHHHHHhhccccchhhHHHHHHHHHHHHHHHH------------H------hhh
Confidence 10000 0 000 00 000011111000 00111111111111000 0 000
Q ss_pred CCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhH
Q 037612 382 QDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDV 461 (663)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~v 461 (663)
. . .. ..+...+ .+..++......+..|..+|+.+........ .......|...+.+..+++
T Consensus 809 ~-~-~~----~~l~~~l---------~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~----~~~l~~~l~~~l~~~~~~v 869 (1207)
T d1u6gc_ 809 K-E-GP----AVVGQFI---------QDVKNSRSTDSIRLLALLSLGEVGHHIDLSG----QLELKSVILEAFSSPSEEV 869 (1207)
T ss_dssp C-C-SH----HHHTTTT---------TTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS----CTHHHHHHHHGGGCSCHHH
T ss_pred h-h-HH----HHHHHHH---------HHHhcccchHHHHHHHHHHHHHHHHhccccc----hHHHHHHHHHHhCCCCHHH
Confidence 0 0 00 0000000 0000000001234455556655543211110 0112335566667777777
Q ss_pred HHHHHHHHHHHhhhhhc------------cHHHHhh---hc-----CCCCchhHhHHHHHHHHh----hhcCcchhhHHH
Q 037612 462 QYNSAMALMEITAVAEK------------DAELRRS---AF-----KPNAPACKAVVDQLFRII----EKADSDLLIPCI 517 (663)
Q Consensus 462 q~~aa~AL~~i~a~a~~------------~~~~rr~---a~-----~~~~~a~~~vv~qL~~ll----~~~~~~l~~~a~ 517 (663)
+..|+.||..++...-. ++..|.. ++ +.........+++++..+ +..++.++..++
T Consensus 870 r~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a 949 (1207)
T d1u6gc_ 870 KSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVA 949 (1207)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 77777777666433210 0000000 00 011111122345555443 444567888888
Q ss_pred HHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHH
Q 037612 518 KAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQL 597 (663)
Q Consensus 518 ~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~ 597 (663)
.+||.|+.... ...+|.|...|.++++.++..|+.++..+..... +...... ..-+++++..|..++..++.
T Consensus 950 ~~lg~L~~~~~---~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~----~~~~~~l-~~li~~ll~~l~d~~~~vR~ 1021 (1207)
T d1u6gc_ 950 ECLGKLTLIDP---ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP----QPIDPLL-KNCIGDFLKTLEDPDLNVRR 1021 (1207)
T ss_dssp HHHHHHHHSSG---GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC----CTHHHHH-HHHSTTTHHHHSSSSTHHHH
T ss_pred HHHHHHHhcCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc----hhhHHHH-HHHHHHHHHHhCCCCHHHHH
Confidence 99998875443 3589999999999999999999999988765432 2222211 22466788889999988888
Q ss_pred HHHHHHHHHhcCCCC
Q 037612 598 SALVLLCYIALHVPD 612 (663)
Q Consensus 598 ~Al~~L~~la~~~~~ 612 (663)
.|+.+|..++.|.|.
T Consensus 1022 ~al~~l~~~~~~~p~ 1036 (1207)
T d1u6gc_ 1022 VALVTFNSAAHNKPS 1036 (1207)
T ss_dssp HHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhChH
Confidence 899999999887765
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.79 E-value=2.5e-05 Score=66.51 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=75.2
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 037612 446 ALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR 525 (663)
Q Consensus 446 al~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~ 525 (663)
+++.|..+|++.++.++..++++|.++.. ...++.|.+++++.++.++..++.+||.+..
T Consensus 23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------------------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~ 82 (111)
T d1te4a_ 23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG 82 (111)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcch--------------------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc
Confidence 57789999999999999999999976521 2357889999999999999999999998852
Q ss_pred chhhHhhccHHHHHHhcccCCHHHHHHHHHHHHh
Q 037612 526 TFKATETRMIVPLVKLLDEREAEVSREASIALTK 559 (663)
Q Consensus 526 ~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~ 559 (663)
.+.++.|..+|++.+++|+++|+.||.+
T Consensus 83 ------~~~~~~L~~ll~d~~~~vr~~A~~aL~t 110 (111)
T d1te4a_ 83 ------ERVRAAMEKLAETGTGFARKVAVNYLET 110 (111)
T ss_dssp ------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 3579999999999999999999999853
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00097 Score=67.54 Aligned_cols=116 Identities=9% Similarity=-0.019 Sum_probs=75.1
Q ss_pred HHHHHHHhcc-CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCCCcc--
Q 037612 148 IWEQVAILYT-AGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRDPES-- 222 (663)
Q Consensus 148 v~~li~~L~~-~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~~~~-- 222 (663)
+..++..+.+ .++...+..+..++..+....+.....-.-...++.++..+.++ +...+..|..++.++......
T Consensus 129 ~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~ 208 (458)
T d1ibrb_ 129 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 208 (458)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344555554 02456677777888777643222111111123578888888765 467899999999999854322
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
..........+.+..++.+++++++..+..+|..++...++
T Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 249 (458)
T d1ibrb_ 209 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249 (458)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 12223334677788888899999999999999999865443
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00087 Score=77.84 Aligned_cols=271 Identities=14% Similarity=0.163 Sum_probs=161.4
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHH
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
.+..++..+++ .+.+.|..|+..|.+.-..+...-..-.....++.|+++|...++++|..|+.+|..|...-... .
T Consensus 4 ~~~~ll~k~~~-~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~ 80 (1207)
T d1u6gc_ 4 HISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q 80 (1207)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H
T ss_pred hHHHHHHhcCC-CCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--h
Confidence 34566788888 89999999988888754321110000011235789999999889999999999999998643221 1
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhH-HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKC-QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~-r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
+ ...++.|+..+.+++...+..++.+|..+...-+.. ...-.....++.++..|....
T Consensus 81 ~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-------------------- 139 (1207)
T d1u6gc_ 81 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI-------------------- 139 (1207)
T ss_dssp H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHH--------------------
T ss_pred H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh--------------------
Confidence 1 235677777777777777777777776654311100 000000001111111111000
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
.
T Consensus 140 ---~---------------------------------------------------------------------------- 140 (1207)
T d1u6gc_ 140 ---A---------------------------------------------------------------------------- 140 (1207)
T ss_dssp ---S----------------------------------------------------------------------------
T ss_pred ---c----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHH
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNS 465 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~a 465 (663)
..+++ .++..|...|..+.......-.. .....+..|...|.+....|++.|
T Consensus 141 -----------------------~~~~~----~v~~~al~~l~~l~~~~g~~l~~-~~~~il~~l~~~l~~~~~~vR~~A 192 (1207)
T d1u6gc_ 141 -----------------------KQEDV----SVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRT 192 (1207)
T ss_dssp -----------------------CCSCH----HHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHH
T ss_pred -----------------------CCCCH----HHHHHHHHHHHHHHHHhhHhhHH-HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 00011 23445555555554422111000 112345567777888899999999
Q ss_pred HHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc-CcchhhHHHHHHHHhhhchhhH----hhccHHHHHH
Q 037612 466 AMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA-DSDLLIPCIKAVGNLARTFKAT----ETRMIVPLVK 540 (663)
Q Consensus 466 a~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~-~~~l~~~a~~aLg~La~~~~~~----e~~~I~pLV~ 540 (663)
+.+|..+...... + .| ..+++.++..+... +......++.+++.+++..... -..++|.+++
T Consensus 193 ~~~l~~l~~~~~~--~----~~-------~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 259 (1207)
T d1u6gc_ 193 IIALGHLVMSCGN--I----VF-------VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 259 (1207)
T ss_dssp HHHHHHHTTTC----------C-------TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHCCH--H----HH-------HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence 9999988643321 1 11 23567777666544 4667777888899998754432 1457999999
Q ss_pred hcccCCHHHHHHHHHHHHhcc
Q 037612 541 LLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 541 LL~~~~~~v~~eAa~AL~~la 561 (663)
.++..++++++.+..++..+.
T Consensus 260 ~l~~~~~~~r~~al~~l~~l~ 280 (1207)
T d1u6gc_ 260 FCNVDDDELREYCIQAFESFV 280 (1207)
T ss_dssp HHSSCCTTTHHHHHHHHHHHH
T ss_pred HhcCccHHHHHHHHHHHHHHH
Confidence 999999999999999998886
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.0088 Score=60.12 Aligned_cols=189 Identities=11% Similarity=0.016 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhh-------cCCCC
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSA-------FKPNA 491 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a-------~~~~~ 491 (663)
++..+..+|..++......-...........+...+.+.+++++..+...+..++............+ +....
T Consensus 232 ~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
T d1ibrb_ 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 311 (458)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHH
Confidence 35556666666665433322222222233445566677888888888888777753321100000000 00111
Q ss_pred chhHhHHHH----HHHHhhhcC-------cchhhHHHHHHHHhhhchhhHh-hccHHHHHHhcccCCHHHHHHHHHHHHh
Q 037612 492 PACKAVVDQ----LFRIIEKAD-------SDLLIPCIKAVGNLARTFKATE-TRMIVPLVKLLDEREAEVSREASIALTK 559 (663)
Q Consensus 492 ~a~~~vv~q----L~~ll~~~~-------~~l~~~a~~aLg~La~~~~~~e-~~~I~pLV~LL~~~~~~v~~eAa~AL~~ 559 (663)
.......+. +...+...+ ..+...+..+++.++..+...- ..+++.+...|++.+..++..|..+|+.
T Consensus 312 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~ 391 (458)
T d1ibrb_ 312 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC 391 (458)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 112223333 333332211 2356677778888877665321 2356666677789999999999999999
Q ss_pred cccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 560 FACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 560 la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
++.+.. .+..+.. -..-++.|+.++.++++.++..|+++|..++...+
T Consensus 392 i~~~~~---~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 392 ILEGPE---PSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439 (458)
T ss_dssp TSSSSC---TTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhcC---HhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 974311 0111111 12457889999999999899999999998865443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=0.0091 Score=65.11 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=77.1
Q ss_pred hHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhhHh----hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCC
Q 037612 494 CKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKATE----TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLH 568 (663)
Q Consensus 494 ~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~~e----~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~ 568 (663)
...+++.++..+...+ ..++..+..++++++..+...- ..++|.|+..|++.+++++..|+.+++.++..-
T Consensus 595 ~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~---- 670 (861)
T d2bpta1 595 ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL---- 670 (861)
T ss_dssp HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHh----
Confidence 3445666667776555 5678889999999887655321 347899999999999999999999998886321
Q ss_pred hhhHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCC
Q 037612 569 SDHSKAIISAGGAKHLVQLVYFG--EQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 569 ~~~~~~Iv~~ggi~~Lv~LL~~~--~~~~q~~Al~~L~~la~~~~~ 612 (663)
.++..-.. ..-+..|++.+... +..++..++.+|..++.+.+.
T Consensus 671 ~~~~~~~~-~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~ 715 (861)
T d2bpta1 671 EEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp GGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHhHhhH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 12356778888765 344677788888888766553
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.02 E-value=0.16 Score=53.27 Aligned_cols=330 Identities=15% Similarity=0.143 Sum_probs=190.4
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHH---HHHhcC--ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchH
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSLARDNDRYGK---LIIEEG--GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVE 224 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~---~Ive~G--~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~ 224 (663)
.++.+|.....++..+....-+..|..+++.... ...+.. .-++++.+|.+++...+..+...+..|+.......
T Consensus 78 ~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~ 157 (477)
T d1ho8a_ 78 PLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNV 157 (477)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCH
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcccccc
Confidence 3355555424555555555555555544332111 111222 23577888877677777788777888876433322
Q ss_pred HHHHc-CchHHHHHhh-ccCChhHHHHHHHHHHHHhcCChhHHHHHHh--CCcHHHHHHHhccCccchhhhHHHhhhhhh
Q 037612 225 HMIHS-GVCLVFAKIL-KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQ--HNIIRLLVGHLAFETVQEHSKYAIVSKATS 300 (663)
Q Consensus 225 ~iv~a-GaIp~Lv~lL-~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~--~g~I~~LV~LL~sgt~~~~s~~~v~~~~~s 300 (663)
...+. .-...+...| .+++.+.+..++..+..|.. .+++|..|.. ...+++|+.+|+.-. + +. +
T Consensus 158 ~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~--~-------~~--~ 225 (477)
T d1ho8a_ 158 KLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRAT--D-------SQ--L 225 (477)
T ss_dssp HHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHH--C------------
T ss_pred chHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHh--c-------cc--c
Confidence 22211 1112222233 56778888888888988886 5799998854 456888888886311 0 00 0
Q ss_pred HHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccccc
Q 037612 301 IHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSN 380 (663)
Q Consensus 301 l~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~ 380 (663)
...++ . ...+
T Consensus 226 ~~~~~----------------------------------------------------~------------------~~~~ 235 (477)
T d1ho8a_ 226 ATRIV----------------------------------------------------A------------------TNSN 235 (477)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhh----------------------------------------------------c------------------ccCC
Confidence 00000 0 0000
Q ss_pred CCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhh--ccHHHHHHHhh-cC
Q 037612 381 GQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITES--RALLCFAVLLE-KG 457 (663)
Q Consensus 381 g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~es--gal~~L~~LL~-~~ 457 (663)
+. -.+++=.+..++|-|+. +...+....+. +-++.|+.+++ +.
T Consensus 236 ~~---------------------------------~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~ 281 (477)
T d1ho8a_ 236 HL---------------------------------GIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITI 281 (477)
T ss_dssp CC---------------------------------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCC
T ss_pred Cc---------------------------------cHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 10 03567788899999999 66777777665 34778888886 56
Q ss_pred ChhHHHHHHHHHHHHhhhhhccH--HHHhhhcCCCCchhHhHHHHHHHHhhhc--CcchhhHHHHHHHHh-hh------c
Q 037612 458 PEDVQYNSAMALMEITAVAEKDA--ELRRSAFKPNAPACKAVVDQLFRIIEKA--DSDLLIPCIKAVGNL-AR------T 526 (663)
Q Consensus 458 ~~~vq~~aa~AL~~i~a~a~~~~--~~rr~a~~~~~~a~~~vv~qL~~ll~~~--~~~l~~~a~~aLg~L-a~------~ 526 (663)
.+.+-.-+.++|.|+........ ..... +...-+.+++..+... +|+-...-+..|... .. +
T Consensus 282 KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~-------~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTs 354 (477)
T d1ho8a_ 282 KEKVSRLCISIILQCCSTRVKQHKKVIKQL-------LLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTS 354 (477)
T ss_dssp SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-------HHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 67888888999999875433211 11110 0111122344455543 233333333333222 11 1
Q ss_pred hh-------------------------------hHhhccHHHHHHhcc----------cCCHHHHHHHHHHHHhcccCCC
Q 037612 527 FK-------------------------------ATETRMIVPLVKLLD----------EREAEVSREASIALTKFACSDN 565 (663)
Q Consensus 527 ~~-------------------------------~~e~~~I~pLV~LL~----------~~~~~v~~eAa~AL~~la~~~~ 565 (663)
|. ..+-.++..|+++|+ +.++.+..-|+.=++.|+-
T Consensus 355 fd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr--- 431 (477)
T d1ho8a_ 355 FDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE--- 431 (477)
T ss_dssp HHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHH---
Confidence 11 011136999999996 3466666678888899973
Q ss_pred CCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 566 YLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 566 ~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
++|+....+-+.||=..+++|+.++++.++.+|+.++--+
T Consensus 432 -~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 471 (477)
T d1ho8a_ 432 -LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 471 (477)
T ss_dssp -HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred -HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2566666677778877888999999999999999988555
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.046 Score=57.55 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=52.9
Q ss_pred hHHHHHHHHhhh----------cCcchhhHHHHHHHHhhhchhhH-----hhccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 496 AVVDQLFRIIEK----------ADSDLLIPCIKAVGNLARTFKAT-----ETRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 496 ~vv~qL~~ll~~----------~~~~l~~~a~~aLg~La~~~~~~-----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
.++++|+++|++ .|+..+..||-=||.+++..+.. +-|+=.-+.+|+++.+++|+.+|..|+.++
T Consensus 392 ~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 471 (477)
T d1ho8a_ 392 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 471 (477)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 478999999973 35667888889999999977652 234555578899999999999999999887
Q ss_pred c
Q 037612 561 A 561 (663)
Q Consensus 561 a 561 (663)
.
T Consensus 472 m 472 (477)
T d1ho8a_ 472 I 472 (477)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.087 Score=57.33 Aligned_cols=133 Identities=8% Similarity=0.039 Sum_probs=81.0
Q ss_pred HHHHHHHhccCC--CHHHHHHHHHHHHHhhcCChhhHHHHHh--cCChHHHHHhhccC--ChHHHHHHHHHHHHhcCCCc
Q 037612 148 IWEQVAILYTAG--SLEHKSDAAASLVSLARDNDRYGKLIIE--EGGVGPLLKLVKEG--KPEGQENAARAIGLLGRDPE 221 (663)
Q Consensus 148 v~~li~~L~~~G--~~e~k~~AA~~L~~La~~~~~~~~~Ive--~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~~~ 221 (663)
+-.++..+.+ + +...|..+..+|..++.+-.. ..+.. ...++.++..+.+. +...+..|..++.+......
T Consensus 130 i~~L~~~l~~-~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~ 206 (876)
T d1qgra_ 130 IPQLVANVTN-PNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence 4445666654 4 466788888888888653221 11111 23578888888754 36788999999988774322
Q ss_pred c--hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhcc
Q 037612 222 S--VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAF 283 (663)
Q Consensus 222 ~--~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~s 283 (663)
. .......-.++.+...+.+++++++..+..++..+....++.-.........+.+...+.+
T Consensus 207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (876)
T d1qgra_ 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 1111122246677777888899999999999999987554433222233333444444443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.53 E-value=0.25 Score=53.13 Aligned_cols=153 Identities=9% Similarity=0.013 Sum_probs=85.5
Q ss_pred HHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhh---hcCCCC----chhHhHHHHHHHHhhhcCc-------chhhHHH
Q 037612 452 VLLEKGPEDVQYNSAMALMEITAVAEKDAELRRS---AFKPNA----PACKAVVDQLFRIIEKADS-------DLLIPCI 517 (663)
Q Consensus 452 ~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~---a~~~~~----~a~~~vv~qL~~ll~~~~~-------~l~~~a~ 517 (663)
...++.+++++..+...+..++............ ...... +....+++.+...+...++ .....+.
T Consensus 273 ~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~ 352 (861)
T d2bpta1 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAG 352 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHH
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4445667788888777776665332211111100 000111 1222345555555544321 2445566
Q ss_pred HHHHHhhhchhhHh-hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHH
Q 037612 518 KAVGNLARTFKATE-TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQ 596 (663)
Q Consensus 518 ~aLg~La~~~~~~e-~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q 596 (663)
.++..++..+...- .-.++.+-..+.+.+...+..|..+++.++.... .+...... ..-++.++.++..+++.++
T Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~---~~~~~~~l-~~~l~~l~~~l~d~~~~vr 428 (861)
T d2bpta1 353 ACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD---KVQRTYYV-HQALPSILNLMNDQSLQVK 428 (861)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---HHHHHHHH-HHHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcc---hhhHHHHH-HHHHHHHHHHhcCcchhhh
Confidence 66777666554311 1123334445578888999999999999874421 12122222 2357788889988888888
Q ss_pred HHHHHHHHHHhc
Q 037612 597 LSALVLLCYIAL 608 (663)
Q Consensus 597 ~~Al~~L~~la~ 608 (663)
..++.++..++.
T Consensus 429 ~~a~~~l~~l~~ 440 (861)
T d2bpta1 429 ETTAWCIGRIAD 440 (861)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 889888887754
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.17 Score=54.89 Aligned_cols=324 Identities=13% Similarity=0.133 Sum_probs=168.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcC-
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSG- 230 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG- 230 (663)
-..+.. ++...|..++..++.++.........-.-...++.++..+...++.++..|.++++.++..... ......
T Consensus 372 ~~~l~~-~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~ 448 (876)
T d1qgra_ 372 KEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE--AAINDVY 448 (876)
T ss_dssp HHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG--GTSSTTT
T ss_pred HHhhcc-chHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcch--hhhhHHH
Confidence 346677 8888999999999998754322221112234789999999988999999999999999842211 011112
Q ss_pred ---chHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH-----------HH--hCCcHHHHHHHhccCccchhhhHHH
Q 037612 231 ---VCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL-----------FA--QHNIIRLLVGHLAFETVQEHSKYAI 294 (663)
Q Consensus 231 ---aIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~-----------i~--~~g~I~~LV~LL~sgt~~~~s~~~v 294 (663)
.++.+...+.+ ++.++..+++++.++.......... +. -...++.|...+......... +
T Consensus 449 ~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~---~ 524 (876)
T d1qgra_ 449 LAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNN---L 524 (876)
T ss_dssp HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTT---H
T ss_pred hhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHh---H
Confidence 34455555544 5789999999999997421000000 00 011234444444322110000 0
Q ss_pred hhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccC
Q 037612 295 VSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQG 374 (663)
Q Consensus 295 ~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~ 374 (663)
...++.++........ .+. .......+........ +.
T Consensus 525 --~~~~~~~l~~~~~~~~------~~~----------------------~~~~~~~~~~~~~~l~---------~~---- 561 (876)
T d1qgra_ 525 --RSSAYESLMEIVKNSA------KDC----------------------YPAVQKTTLVIMERLQ---------QV---- 561 (876)
T ss_dssp --HHHHHHHHHHHHHTCC------STT----------------------HHHHHHHHHHHHHHHH---------HH----
T ss_pred --HHHHHHHHHHhhhhhh------hHH----------------------HHHHHHHHHHHHHHHH---------HH----
Confidence 0001111111100000 000 0000000000000000 00
Q ss_pred ccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHh
Q 037612 375 TDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLL 454 (663)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL 454 (663)
+.. ........++.....++.....+|..+.+........-.....+..+..++
T Consensus 562 -----------------------l~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l 615 (876)
T d1qgra_ 562 -----------------------LQM---ESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMF 615 (876)
T ss_dssp -----------------------HTT---TTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC
T ss_pred -----------------------HHH---hhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHH
Confidence 000 000000112222234566666777777654333222212234455666777
Q ss_pred hc--CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhhH-
Q 037612 455 EK--GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKAT- 530 (663)
Q Consensus 455 ~~--~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~~- 530 (663)
.. ++.+++..+..++..+...-..+ |. |-...+++.|+..+...+ +++...|+..+|.+++.....
T Consensus 616 ~~~~~~~~~~~~~l~~l~~l~~~~~~~-------~~---~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 685 (876)
T d1qgra_ 616 QSTAGSGGVQEDALMAVSTLVEVLGGE-------FL---KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI 685 (876)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHGGG-------GG---GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG
T ss_pred hcCCCCcchHHHHHHHHHHHHHHcchh-------hH---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhh
Confidence 64 45688999988888775433221 22 233557788888887665 678888888888888754432
Q ss_pred ---hhccHHHHHHhcccC--CHHHHHHHHHHHHhcc
Q 037612 531 ---ETRMIVPLVKLLDER--EAEVSREASIALTKFA 561 (663)
Q Consensus 531 ---e~~~I~pLV~LL~~~--~~~v~~eAa~AL~~la 561 (663)
-..+++.|+..|++. +..++..+.++++.++
T Consensus 686 ~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~ 721 (876)
T d1qgra_ 686 IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIA 721 (876)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHH
Confidence 135788999999654 4678888999987775
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=92.52 E-value=0.025 Score=54.45 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=38.5
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHH
Q 037612 188 EGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~a 253 (663)
.-.+..|..|++..++.++..|+..|. .+.|..++.+++.+|+..++..
T Consensus 65 ~a~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~~~L~~L~~D~d~~VR~~aa~~ 113 (233)
T d1lrva_ 65 YSPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVADR 113 (233)
T ss_dssp TSCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHcC-----------------HHHHHHHhcCCChhHHHHHHhc
Confidence 345778999999989999999886541 3568888888999998887764
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=85.92 E-value=8.4 Score=37.75 Aligned_cols=151 Identities=13% Similarity=0.146 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc----CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 423 AARALWHLAKGNSPICRSITESRALLCFAVLLEK----GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 423 Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~----~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
|+..|+.++... .-+ ...+.-+..|+++ .++.++.-+..++..+....-.+ --.......+.+.
T Consensus 107 a~~~l~~l~~~~-~Pt-----~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~------~~~~~~~~~~~l~ 174 (336)
T d1lsha1 107 ATQIVASTLSNQ-QAT-----RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN------TVSCPDELLQPLH 174 (336)
T ss_dssp HHHHHHHHHHTC-CCC-----HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT------CSSCCGGGTHHHH
T ss_pred HHHHHHHHhccC-CCC-----HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcC------CCCCcHHHHHHHH
Confidence 455666665432 111 1234455566653 45677777777777654211100 0011122334455
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhccc-------CCHHHHHHHHHHHHhcccCCCCCChhh
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDE-------REAEVSREASIALTKFACSDNYLHSDH 571 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~-------~~~~v~~eAa~AL~~la~~~~~~~~~~ 571 (663)
+.+.+.+..++.+...-+.+||||+.. ...++.|...+.+ ....++..|.+||.++++.. +.
T Consensus 175 ~~l~~~~~~~~~~~~~~~LkaLGN~g~------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~----p~- 243 (336)
T d1lsha1 175 DLLSQSSDRAKEEEIVLALKALGNAGQ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD----PR- 243 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTC------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC----HH-
T ss_pred HHHHHhhcccchHHHHHHHHHHhccCC------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcC----cH-
Confidence 556666666677777889999999973 2468888888843 36789999999999998753 11
Q ss_pred HHHHHHcCCHHHHHHHHhcCC--hhHHHHHHHHH
Q 037612 572 SKAIISAGGAKHLVQLVYFGE--QIVQLSALVLL 603 (663)
Q Consensus 572 ~~~Iv~~ggi~~Lv~LL~~~~--~~~q~~Al~~L 603 (663)
. ..+.|+++....+ +.+.+.|+..|
T Consensus 244 --~-----v~~~l~~i~~n~~e~~EvRiaA~~~l 270 (336)
T d1lsha1 244 --K-----VQEIVLPIFLNVAIKSELRIRSCIVF 270 (336)
T ss_dssp --H-----HHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred --H-----HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 1 2345666665543 32444455555
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=85.34 E-value=0.091 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.1
Q ss_pred HHHHHHHhhcCChhHHHHHHHHH
Q 037612 447 LLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 447 l~~L~~LL~~~~~~vq~~aa~AL 469 (663)
+..|..|++..+++|+..+|..|
T Consensus 68 ~~~L~~Ll~D~d~~VR~~AA~~L 90 (233)
T d1lrva_ 68 VEALTPLIRDSDEVVRRAVAYRL 90 (233)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHc
Confidence 45677899999999999998764
|