Citrus Sinensis ID: 037628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MHFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVPSQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPNVADFAMLWSGYRWFV
Secondary Structure (PSIPRED)
cccccccccEEcccccccHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEccccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEc
Coil and Loop (DISEMBL)
MHFFHFGIsygldvnmdRVEDVLLHQKLLAVakdpekrpayHIRFIENlctrtdgnddqlFVNSistarpsldadnegivpsqkrqelvpihevvfstvdkpKLLSQLSALLSDIGLNIREAhvfsttdgysldvfvvdgwpvegsvlspnvADFAMLWSGYRWFV
Flexible Loop (DISEMBL)
MHFFHFGISYGLDVNMDRVEDVLLHQKLLavakdpekrpaYHIRFIENLCTRTDGNDDQLFVNSIStarpsldadneGIVPSQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPNVADFAMLWSGYRWFV
Low Complexity Region (SEG)
MHFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVPSQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPNVADFAMLWSGYRWFV
Disordered region (IsUnstruct)
**FFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSI*********************ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPNVADFAMLWSGYRWF*
Disordered Region (DISOPRED)
MHFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGN********************************VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVL***V****MLWS*YRWFV
Disordered Region (DISEMBL)
MHFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVPSQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPNVADFAMLWSGYRWFV
Disordered Region (DISPRO)
**FFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTR**********************************ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPNVADFAMLWSGYRWFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVPSQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPNVADFAMLWSGYRWFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
296088117	550	unnamed protein product [Vitis vinifera]	0.861	0.26	0.604	4e-48
359493032	555	PREDICTED: serine/threonine-protein kina	0.861	0.257	0.593	6e-47
255584578	561	protein kinase, putative [Ricinus commun	0.867	0.256	0.609	2e-45
449497118	497	PREDICTED: tyrosine-protein kinase Srms-	0.861	0.287	0.570	2e-39
449446516	552	PREDICTED: serine/threonine-protein kina	0.861	0.259	0.570	2e-39
356534057	552	PREDICTED: serine/threonine-protein kina	0.855	0.257	0.553	2e-38
357443713	760	Serine/threonine protein kinase atg1 [Me	0.855	0.186	0.544	2e-38
224062914	494	predicted protein [Populus trichocarpa]	0.873	0.293	0.602	1e-34
168010967	572	predicted protein [Physcomitrella patens	0.861	0.25	0.458	7e-33
222616686	550	hypothetical protein OsJ_35327 [Oryza sa	0.861	0.26	0.561	4e-31

>gi|296088117|emb|CBI35506.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 110/182 (60%), Positives = 126/182 (69%), Gaps = 39/182 (21%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLF 61
           HF     SYGLDVN+DRV+DVLLHQKLLA+AK+P+KRP YH+RF+ENL T+ DGNDDQ  
Sbjct: 54  HFNRLPPSYGLDVNIDRVDDVLLHQKLLALAKEPDKRPVYHVRFLENLSTKVDGNDDQQS 113

Query: 62  VNSISTARPSLDADNEGIVPSQKRQEL--------------------------------- 88
           ++ +STARP  +ADNEG+VPS  R E+                                 
Sbjct: 114 MSVLSTARPCCNADNEGVVPSHNRNEIDFEPCSKLEDLNLDVKKDSTDMERRCLMENSSR 173

Query: 89  ------VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP 142
                 VPIHEV+FST+DKPKLLSQLSALLSDIGLNIREAHVFST DGYSLDVFVVDGWP
Sbjct: 174 RQETSNVPIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTIDGYSLDVFVVDGWP 233

Query: 143 VE 144
           VE
Sbjct: 234 VE 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493032|ref|XP_002264745.2| PREDICTED: serine/threonine-protein kinase HT1-like [Vitis vinifera]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 127/187 (67%), Gaps = 44/187 (23%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLF 61
           HF     SYGLDVN+DRV+DVLLHQKLLA+AK+P+KRP YH+RF+ENL T+ DGNDDQ  
Sbjct: 54  HFNRLPPSYGLDVNIDRVDDVLLHQKLLALAKEPDKRPVYHVRFLENLSTKVDGNDDQQS 113

Query: 62  VNSISTARPSLDADNEGIVPSQ-------------------------------------- 83
           ++ +STARP  +ADNEG+VPS                                       
Sbjct: 114 MSVLSTARPCCNADNEGVVPSHNRYAIYGNEIDFEPCSKLEDLNLDVKKDSTDMERRCLM 173

Query: 84  ----KRQEL--VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFV 137
               +RQE   VPIHEV+FST+DKPKLLSQLSALLSDIGLNIREAHVFST DGYSLDVFV
Sbjct: 174 ENSSRRQETSNVPIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTIDGYSLDVFV 233

Query: 138 VDGWPVE 144
           VDGWPVE
Sbjct: 234 VDGWPVE 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584578|ref|XP_002533015.1| protein kinase, putative [Ricinus communis] gi|223527204|gb|EEF29369.1| protein kinase, putative [Ricinus communis]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/187 (60%), Positives = 122/187 (65%), Gaps = 43/187 (22%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLF 61
           HF     SYG DVNMDRVEDVLLHQKLLA+AKDPEKRP YHIRF+ENL  R+D  DDQ  
Sbjct: 56  HFNRLPPSYGFDVNMDRVEDVLLHQKLLALAKDPEKRPVYHIRFLENLGARSDDGDDQQV 115

Query: 62  VNSISTARPSLDADNEGIVPSQK------------------------------------- 84
           +N IS  RP  DADN G VPS K                                     
Sbjct: 116 LNVISPGRPDFDADN-GAVPSNKRIRDSAIDFEPCSKLEDLNLDVRKTSKGVEETYHMEN 174

Query: 85  ---RQEL--VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD 139
              RQE   VPIHEV+FSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD
Sbjct: 175 VSRRQEFVPVPIHEVIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD 234

Query: 140 GWPVEGS 146
           GWP++ +
Sbjct: 235 GWPIQDT 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497118|ref|XP_004160317.1| PREDICTED: tyrosine-protein kinase Srms-like [Cucumis sativus]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/177 (57%), Positives = 119/177 (67%), Gaps = 34/177 (19%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLF 61
           HF     SYGLDVNM++VEDVLLHQKLL++AKDPEK P YHIRF+E++ T++DGNDD +F
Sbjct: 56  HFNRLPPSYGLDVNMEKVEDVLLHQKLLSLAKDPEKCPVYHIRFLEHISTKSDGNDDHVF 115

Query: 62  VNSISTARPSLDADNEGIVPSQKRQE---------------------------------- 87
           ++SI  +  S +A +  +  S KR                                    
Sbjct: 116 LDSILLSGSSNEAADRRLPLSHKRTRGNIIDFEACSKLEGLNLDVRKNSKAMDRRPGNIG 175

Query: 88  LVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144
            V IHEV+FSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP+E
Sbjct: 176 HVLIHEVIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPIE 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446516|ref|XP_004141017.1| PREDICTED: serine/threonine-protein kinase HT1-like [Cucumis sativus]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/177 (57%), Positives = 119/177 (67%), Gaps = 34/177 (19%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLF 61
           HF     SYGLDVNM++VEDVLLHQKLL++AKDPEK P YHIRF+E++ T++DGNDD +F
Sbjct: 56  HFNRLPPSYGLDVNMEKVEDVLLHQKLLSLAKDPEKCPVYHIRFLEHISTKSDGNDDHVF 115

Query: 62  VNSISTARPSLDADNEGIVPSQKRQE---------------------------------- 87
           ++SI  +  S +A +  +  S KR                                    
Sbjct: 116 LDSILLSGSSNEAADRRLPLSHKRTRGNIIDFEACSKLEGLNLDVRKNSKPMDRRPGNIG 175

Query: 88  LVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144
            V IHEV+FSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP+E
Sbjct: 176 HVLIHEVIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPIE 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534057|ref|XP_003535574.1| PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 113/186 (60%), Gaps = 44/186 (23%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLF 61
           HF     SYGLDVN+DR EDVLLHQ LLA+AKDP KRP YHIRF+EN+ TRTD  D Q+ 
Sbjct: 54  HFNRLPPSYGLDVNIDRAEDVLLHQSLLALAKDPHKRPVYHIRFLENISTRTDSEDQQIL 113

Query: 62  VNSISTARPSLDADNEGIV---------------PSQKRQEL------------------ 88
               S    S  A N G V               P  K ++L                  
Sbjct: 114 STHYSPGSSS-HATNGGAVSPGKSKMRDIANEFEPCSKLEDLNLDVRKNSKETEEKFLSD 172

Query: 89  ----------VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV 138
                     VP+HE++FSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV
Sbjct: 173 NFFQRLEHSSVPVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV 232

Query: 139 DGWPVE 144
           DGWPVE
Sbjct: 233 DGWPVE 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443713|ref|XP_003592134.1| Serine/threonine protein kinase atg1 [Medicago truncatula] gi|355481182|gb|AES62385.1| Serine/threonine protein kinase atg1 [Medicago truncatula]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 114/180 (63%), Gaps = 38/180 (21%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLF 61
           HF     SYGLDVN+DR EDVLLH+ LL +A+DP+KRP YHIR +EN+ TRTDG +DQ  
Sbjct: 55  HFNRLPPSYGLDVNVDRAEDVLLHRSLLDLARDPDKRPVYHIRLLENIATRTDG-EDQEI 113

Query: 62  VNSISTARPSLDADNEGIVPSQKR------------------------------------ 85
           VN+ +    S  A N G++ S KR                                    
Sbjct: 114 VNTHTRPESSSHATNGGVIASNKRTRDLATEFETYSKLEDLNLDVMKNSKDKIDSFSQRH 173

Query: 86  -QELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144
               VP+HE++FS VDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP+E
Sbjct: 174 EHSSVPVHEIIFSAVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPLE 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062914|ref|XP_002300929.1| predicted protein [Populus trichocarpa] gi|222842655|gb|EEE80202.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 111/161 (68%), Gaps = 16/161 (9%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENL---CTR------ 52
           HF     SYGLDVNMD+VEDVLLHQKLLA+AKDPE+RP YHIRF+E L   C+       
Sbjct: 32  HFNRLPASYGLDVNMDKVEDVLLHQKLLAMAKDPERRPVYHIRFLEVLPRFCSSHYQWLL 91

Query: 53  ----TDGNDDQLFVNSISTARPSLDAD-NEGIVPSQKRQEL--VPIHEVVFSTVDKPKLL 105
                  + D        +    L+ D  +     ++RQE+  VPIHE +FSTVDKPKLL
Sbjct: 92  ILLILLNHMDCTIEFEPCSKLEDLNLDVRKSSKDMEERQEVSHVPIHEFIFSTVDKPKLL 151

Query: 106 SQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGS 146
           SQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP E +
Sbjct: 152 SQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPFEDT 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168010967|ref|XP_001758175.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690631|gb|EDQ76997.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 104/168 (61%), Gaps = 25/168 (14%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGN----D 57
           HF      Y LDV++DR EDVL H++LL  AK PEKRP +H+R ++ L   +        
Sbjct: 57  HFNRLPTRYALDVHVDRAEDVLTHKRLLEEAKVPEKRPVFHVRAVQVLPVESQDEPPSPS 116

Query: 58  DQLFVNSISTARP-----------SLDADNEGIVPSQKRQE----------LVPIHEVVF 96
           D   ++    A P           ++D +++ +V  ++  +           +P+HE+ F
Sbjct: 117 DHSTLSKFRLAPPVFGSSANLEALAMDFNSKSVVHGEESDDSHHSESASHLQIPMHEITF 176

Query: 97  STVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144
           ST+DKPKLLSQ+SALL+D+GLNIREAHVFSTTDGYSLDVFVVDGWP E
Sbjct: 177 STIDKPKLLSQMSALLADVGLNIREAHVFSTTDGYSLDVFVVDGWPSE 224

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222616686|gb|EEE52818.1| hypothetical protein OsJ_35327 [Oryza sativa Japonica Group]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 104/155 (67%), Gaps = 12/155 (7%)

Query: 2   HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIE-----NLCTRTDGN 56
           HF     SY LD+N+D+ EDVL+HQK+LA AKDP++RPA+H+RF+        C  T G 
Sbjct: 74  HFMRLPHSYQLDINVDKAEDVLVHQKVLAEAKDPDRRPAFHVRFLRLVVFGEKCHSTGGM 133

Query: 57  DDQLFVNSISTARPSLD-------ADNEGIVPSQKRQELVPIHEVVFSTVDKPKLLSQLS 109
                + SI    P+ D       AD+   +  ++      IHEVVFSTVDKPKLLSQLS
Sbjct: 134 MLTPTILSIEEVDPTYDSDASEDGADDGDDLSVRQDTSYAHIHEVVFSTVDKPKLLSQLS 193

Query: 110 ALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144
           ALLSDIGLNIREAHVFST D YSLDVFVVDGWP+E
Sbjct: 194 ALLSDIGLNIREAHVFSTFDNYSLDVFVVDGWPIE 228

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:2121154	575	STY46 "serine/threonine/tyrosi	0.331	0.095	0.781	4.3e-29
TAIR|locus:2827943	546	STY8 "serine/threonine/tyrosin	0.331	0.100	0.727	4.3e-28
TAIR|locus:2128043	570	STY17 "serine/threonine/tyrosi	0.415	0.121	0.585	2.3e-17

TAIR|locus:2121154 STY46 "serine/threonine/tyrosine kinase 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
 Identities = 43/55 (78%), Positives = 50/55 (90%)

Query:    90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144
             P+HE+ FST DKPKLL QL+ALL+++GLNI+EAH FSTTDGYSLDVFVVDGWP E
Sbjct:   175 PLHEITFSTEDKPKLLFQLTALLAELGLNIQEAHAFSTTDGYSLDVFVVDGWPYE 229

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IGI

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2827943 STY8 "serine/threonine/tyrosine kinase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
 Identities = 40/55 (72%), Positives = 49/55 (89%)

Query:    90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144
             P+HE+ FST+DKPKLLSQL++LL ++GLNI+EAH FST DG+SLDVFVVDGW  E
Sbjct:   171 PMHEITFSTIDKPKLLSQLTSLLGELGLNIQEAHAFSTVDGFSLDVFVVDGWSQE 225

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IGI

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2128043 STY17 "serine/threonine/tyrosine kinase 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 41/70 (58%), Positives = 55/70 (78%)

Query:    75 DNEGIVPSQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLD 134
             D++  V +Q      P+HE+ FST+D+PKLLSQL+++L ++GLNI+EAH FST DG+SLD
Sbjct:   163 DDDSAVNAQLPNSR-PMHEITFSTIDRPKLLSQLTSMLGELGLNIQEAHAFSTADGFSLD 221

Query:   135 VFVVDGWPVE 144
             VFVVDGW  E
Sbjct:   222 VFVVDGWSQE 231

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IGI

GO:0007015 "actin filament organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002272001 SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (553 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
cd04928	68	cd04928, ACT_TyrKc, Uncharacterized, N-terminal AC	2e-24
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	5e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-07
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-05
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	5e-05
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	5e-05
pfam01842	66	pfam01842, ACT, ACT domain	9e-05
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	9e-05
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.001
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	0.003
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	0.003

>gnl|CDD|153200 cd04928, ACT_TyrKc, Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

 Score = 89.9 bits (223), Expect = 2e-24
 Identities = 35/51 (68%), Positives = 42/51 (82%)

Query: 91  IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW 141
           +HE+ F+  DKPKLLSQLS+LL D+GLNI EAH FST DG +LD+FVV GW
Sbjct: 1   MHEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW 51

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 68

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 62.9 bits (154), Expect = 5e-14
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 92  HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP 142
            EV   T D+P L ++++  L  +GLNI +A +F+T DGY+LD FVV    
Sbjct: 2   TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD 52

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 93  EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV 138
            V     D+P LL+ ++ +L+D+GLNI +A + STT   +LDVF V
Sbjct: 2   VVEVYAPDRPGLLADITRVLADLGLNIHDARI-STTGERALDVFYV 46

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 93  EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV 138
           EV     D P L S+++   +  G NI +A +F+TTDG +LD F +
Sbjct: 734 EVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWI 779

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 93  EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV---DGWPVE 144
           EV     D+P L ++++  L+ + L++ +A V +T DG +LD FVV    G P  
Sbjct: 670 EVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPA 724

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 14/45 (31%), Positives = 28/45 (62%)

Query: 94  VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV 138
           +  S  D+P LL+++ ++L++ G+NI      ++ DG   D+F+V
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV 45

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 93  EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV---DGWPVEGSVLS 149
           EV     D+P+L + + A LS  GL+I +A +F+T DGY+LD F+V   DG+PVE    +
Sbjct: 686 EVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRA 745

Query: 150 PNVADFA 156
               +  
Sbjct: 746 ALRGELI 752

Length = 867

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 93  EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV---DGWPVE 144
           E+   + D+P L + + A L    L++ +A +F++ DG ++D F+V   DG P+ 
Sbjct: 703 EIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS 757

Length = 884

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 38.5 bits (90), Expect = 9e-05
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 92  HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG 140
             +     D+P LL+++   L+D G+NI      ++ D   +   VV  
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVV 49

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 97  STVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV 138
           + +D+P LL+ ++ +L+++GLNI  A + +T    + DVF V
Sbjct: 6   TALDRPGLLADVTRVLAELGLNIHSAKI-ATLGERAEDVFYV 46

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 100 DKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV---DGWPV 143
           D+    +   A +  + LNI +A + +++  ++LD ++V   DG P+
Sbjct: 713 DQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPI 759

Length = 895

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 93  EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVV 138
           EV  +  D+P LL  L+  LSD+ LNI  AH+   T G  ++DVF V
Sbjct: 847 EV--NGRDRPGLLYDLTRALSDLNLNIASAHI--ATYGERAVDVFYV 889

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 21/117 (17%)

Query: 22  VLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP 81
             L Q L+ V     K P            R      Q F        P +   N     
Sbjct: 730 QELLQGLVDVLAGLAKDPDTISA------RRARRRRLQHF-----AVPPRVTILNTA--- 775

Query: 82  SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV 138
                    I EV    +D+P LL+++   L ++GL+I+ A + +T    + DVF V
Sbjct: 776 ----SRKATIMEVR--ALDRPGLLARVGRTLEELGLSIQSAKI-TTFGEKAEDVFYV 825

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.7
PRK03059	856	PII uridylyl-transferase; Provisional	99.62
PRK04374	869	PII uridylyl-transferase; Provisional	99.62
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.61
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.61
PRK05092	931	PII uridylyl-transferase; Provisional	99.57
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.55
PRK05007	884	PII uridylyl-transferase; Provisional	99.54
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.53
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.49
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.43
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.36
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.28
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.24
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	99.24
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.23
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	99.1
PRK03381	774	PII uridylyl-transferase; Provisional	99.07
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.01
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.0
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.94
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	98.92
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.9
PRK04374	869	PII uridylyl-transferase; Provisional	98.89
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	98.89
PRK03059	856	PII uridylyl-transferase; Provisional	98.86
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	98.84
PRK03381	774	PII uridylyl-transferase; Provisional	98.84
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.77
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.76
PRK00194	90	hypothetical protein; Validated	98.7
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.67
PRK05092	931	PII uridylyl-transferase; Provisional	98.6
PRK01759	854	glnD PII uridylyl-transferase; Provisional	98.47
PRK05007	884	PII uridylyl-transferase; Provisional	98.46
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.41
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	98.37
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.35
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	98.13
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	98.12
PRK11589	190	gcvR glycine cleavage system transcriptional repre	97.99
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	97.91
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.91
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.8
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.69
PRK11589	190	gcvR glycine cleavage system transcriptional repre	97.68
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.63
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.61
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.54
COG3830	90	ACT domain-containing protein [Signal transduction	97.51
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	97.5
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	97.47
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.37
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	97.36
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	97.33
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.29
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.29
PLN02828	268	formyltetrahydrofolate deformylase	97.23
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.23
cd02116	60	ACT ACT domains are commonly involved in specifica	97.18
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.14
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.11
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.09
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.05
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	97.03
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	97.0
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.96
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.88
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.87
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.87
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.82
PRK00227	693	glnD PII uridylyl-transferase; Provisional	96.79
PRK08577	136	hypothetical protein; Provisional	96.79
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.78
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.78
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.74
PRK04435	147	hypothetical protein; Provisional	96.62
COG1707	218	ACT domain-containing protein [General function pr	96.44
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	96.1
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.93
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.83
PRK07334	403	threonine dehydratase; Provisional	95.54
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.44
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.21
COG4747	142	ACT domain-containing protein [General function pr	95.06
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.78
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.3
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	94.15
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	93.92
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	93.82
PRK06545	359	prephenate dehydrogenase; Validated	93.81
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.3
PRK06382	406	threonine dehydratase; Provisional	93.26
COG2150	167	Predicted regulator of amino acid metabolism, cont	93.24
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	93.05
PRK08818	370	prephenate dehydrogenase; Provisional	92.89
COG4747	142	ACT domain-containing protein [General function pr	92.18
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	91.92
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	91.72
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.67
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	90.83
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	90.65
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	90.43
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	90.1
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	89.62
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	89.43
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	89.04
PRK08198	404	threonine dehydratase; Provisional	88.95
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	87.84
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.28
PRK11899	279	prephenate dehydratase; Provisional	87.18
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	86.58
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	83.16
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	82.83
PRK06349	426	homoserine dehydrogenase; Provisional	80.49
COG4492	150	PheB ACT domain-containing protein [General functi	80.36

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.70  E-value=8.3e-17  Score=111.33  Aligned_cols=55  Identities=64%  Similarity=1.033  Sum_probs=52.5

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGS  146 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~  146 (166)
                      ++|+|+|+||||||+++|++|+.+|+||++|+++|+.||+++|+|+|.+++++++
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~~   56 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGET   56 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccch
Confidence            6999999999999999999999999999999999999999999999999988654

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.62  E-value=9.2e-16  Score=147.30  Aligned_cols=98  Identities=23%  Similarity=0.341  Sum_probs=82.5

Q ss_pred             cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628            2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP   81 (166)
Q Consensus         2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~   81 (166)
                      ++.+||++|++...   +++|+.|.+++..+...+. |.+-+   .                                  
T Consensus       633 ~~~~~~~~Yf~~~~---~~~I~~h~~~~~~~~~~~~-~~v~~---~----------------------------------  671 (856)
T PRK03059        633 LWDQLDVGYFLRHD---AADIAWHTRHLYRHVDTDT-PIVRA---R----------------------------------  671 (856)
T ss_pred             HHHhCChHHhccCC---HHHHHHHHHHHHhcccCCC-CeEEE---E----------------------------------
Confidence            57899999999999   5999999999988754333 32223   1                                  


Q ss_pred             cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628           82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV  143 (166)
Q Consensus        82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~  143 (166)
                         ..+..++++|+|+|+|+||||++|||+|+.+|+||++|+|+|+.||+++|+|+|.++.+
T Consensus       672 ---~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~  730 (856)
T PRK03059        672 ---LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEE  730 (856)
T ss_pred             ---ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCC
Confidence               12334789999999999999999999999999999999999999999999999987655

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.62  E-value=2.6e-15  Score=144.41  Aligned_cols=98  Identities=19%  Similarity=0.129  Sum_probs=82.1

Q ss_pred             cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628            2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP   81 (166)
Q Consensus         2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~   81 (166)
                      ++++||++|++...   +++|+.|.+++..+. +.. |.+-++.                                    
T Consensus       645 ~~~~l~~~Y~~~~~---~~~I~~h~~~~~~~~-~~~-~~v~~~~------------------------------------  683 (869)
T PRK04374        645 QFAGMPDENFLRFR---PEQLAWQAASLIEVE-IGQ-TLVKARR------------------------------------  683 (869)
T ss_pred             HHHhCCchhhcCCC---HHHHHHHHHHHHhcC-CCC-CeEEEee------------------------------------
Confidence            57899999999999   599999999998864 222 2222211                                    


Q ss_pred             cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628           82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV  143 (166)
Q Consensus        82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~  143 (166)
                         ..+..++++|+|+|+|+||||++|||+|+.+|+||++|+|||+.||+++|+|+|.++++
T Consensus       684 ---~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~  742 (869)
T PRK04374        684 ---AVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDT  742 (869)
T ss_pred             ---eccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCC
Confidence               12335789999999999999999999999999999999999999999999999998766

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.61  E-value=1.7e-15  Score=104.27  Aligned_cols=55  Identities=42%  Similarity=0.628  Sum_probs=50.8

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG  145 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~  145 (166)
                      +++|+|+|+||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.++++..
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~   55 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEP   55 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCC
Confidence            3789999999999999999999999999999999999899999999998876543

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.61  E-value=2e-15  Score=145.53  Aligned_cols=103  Identities=18%  Similarity=0.292  Sum_probs=84.0

Q ss_pred             cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628            2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP   81 (166)
Q Consensus         2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~   81 (166)
                      ++.+||++|++..+   +++|.-|.+++..+..+.. |.+.++.-.                                  
T Consensus       656 ~~~~~~~~Y~l~~~---~~~I~~h~~~~~~~~~~~~-~~v~~~~~~----------------------------------  697 (895)
T PRK00275        656 LWSQLGDDYFLRHT---AGDIAWHTEAILQHPDDGG-PLVLIKETT----------------------------------  697 (895)
T ss_pred             HHHhCCcHHhcCCC---HHHHHHHHHHHHhcccCCC-CeEEEEecC----------------------------------
Confidence            57899999999999   5999999999988754444 333231100                                  


Q ss_pred             cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628           82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG  145 (166)
Q Consensus        82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~  145 (166)
                         .....++++|+|+|+|+||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++++..
T Consensus       698 ---~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~  758 (895)
T PRK00275        698 ---QREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEP  758 (895)
T ss_pred             ---ccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCC
Confidence               0112478999999999999999999999999999999999999999999999999877643

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.57  E-value=1.1e-14  Score=140.87  Aligned_cols=99  Identities=26%  Similarity=0.353  Sum_probs=85.0

Q ss_pred             cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628            2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP   81 (166)
Q Consensus         2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~   81 (166)
                      ++.+||++|++..+   +++|+.|.+++....+....+++.++.                                    
T Consensus       686 ~~~~~~~~yf~~~~---~~~i~~h~~~~~~~~~~~~~~~v~~~~------------------------------------  726 (931)
T PRK05092        686 YLARHYPAYWLAVD---LDTQARHARFIRDADDAGRPLATEVRP------------------------------------  726 (931)
T ss_pred             HHHhCCcHHhcCCC---HHHHHHHHHHHHhccccCCCcEEEEEe------------------------------------
Confidence            57899999999999   599999999999886544556665511                                    


Q ss_pred             cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628           82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV  143 (166)
Q Consensus        82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~  143 (166)
                          ....++++|+|+|+|+||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|.++++
T Consensus       727 ----~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g  784 (931)
T PRK05092        727 ----DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFG  784 (931)
T ss_pred             ----cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCC
Confidence                1234689999999999999999999999999999999999999999999999977655

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.55  E-value=2.1e-14  Score=137.53  Aligned_cols=99  Identities=24%  Similarity=0.297  Sum_probs=83.0

Q ss_pred             cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628            2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP   81 (166)
Q Consensus         2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~   81 (166)
                      ++.++|.+|++...+   ++|+.|.+++.++.+.++ |.+.+                                      
T Consensus       623 ~~~~~~~~y~~~~~~---~~I~~h~~~~~~~~~~~~-~~v~~--------------------------------------  660 (850)
T TIGR01693       623 LWLRAYDDYFLRFTH---KEIAWHAESLRRALSSGG-PLALI--------------------------------------  660 (850)
T ss_pred             HHHhCCchhhcCCCH---HHHHHHHHHHHhcccCCC-CEEEE--------------------------------------
Confidence            568899999999995   999999999998754333 33333                                      


Q ss_pred             cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628           82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE  144 (166)
Q Consensus        82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~  144 (166)
                        ......++++|+|+|+||||||++|+++|+.+|+||++|+|+||.+|+++|+|+|.+.++.
T Consensus       661 --~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~  721 (850)
T TIGR01693       661 --DGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGS  721 (850)
T ss_pred             --eccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCC
Confidence              0011257899999999999999999999999999999999999999999999999887664

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.54  E-value=5.3e-14  Score=135.61  Aligned_cols=98  Identities=20%  Similarity=0.293  Sum_probs=83.1

Q ss_pred             cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628            2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP   81 (166)
Q Consensus         2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~   81 (166)
                      ++..||++|++...   +++|+.|.+++..+..  ..|.+.+   .                                  
T Consensus       657 ~~~~~~~~yf~~~~---~~~I~~h~~~~~~~~~--~~p~V~i---~----------------------------------  694 (884)
T PRK05007        657 IWSRCRADYFLRHT---PNQLAWHARHLLQHDL--DKPLVLL---S----------------------------------  694 (884)
T ss_pred             HHHhCChHHhcCCC---HHHHHHHHHHHHhccC--CCCeEEE---E----------------------------------
Confidence            57899999999999   5999999999988643  2244433   1                                  


Q ss_pred             cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628           82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE  144 (166)
Q Consensus        82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~  144 (166)
                         .....++++|+|+|+|+||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.+.++.
T Consensus       695 ---~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~  754 (884)
T PRK05007        695 ---KQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGS  754 (884)
T ss_pred             ---ecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCC
Confidence               123357899999999999999999999999999999999999999999999999887664

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.53  E-value=4.9e-14  Score=135.43  Aligned_cols=97  Identities=20%  Similarity=0.246  Sum_probs=82.1

Q ss_pred             cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628            2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP   81 (166)
Q Consensus         2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~   81 (166)
                      ++.+||.+|.+...   +++|+.|.+++.....   .|.+.+   .                                  
T Consensus       634 ~~~~~~~~yf~~~~---~~~I~~h~~~~~~~~~---~~~V~i---~----------------------------------  670 (854)
T PRK01759        634 LWQRCPEDYFLRNT---PKQIAWHALLLLDFRG---DLLVKI---S----------------------------------  670 (854)
T ss_pred             HHHhCCcHHhcCCC---HHHHHHHHHHHHhcCC---CCEEEE---E----------------------------------
Confidence            57889999999998   5999999999977642   233333   1                                  


Q ss_pred             cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628           82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE  144 (166)
Q Consensus        82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~  144 (166)
                         .....++++|+|+|+||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.+.++.
T Consensus       671 ---~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~  730 (854)
T PRK01759        671 ---NRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK  730 (854)
T ss_pred             ---ecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC
Confidence               123457899999999999999999999999999999999999999999999999887664

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.49  E-value=7.8e-14  Score=97.38  Aligned_cols=52  Identities=25%  Similarity=0.361  Sum_probs=48.6

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE  144 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~  144 (166)
                      .+.|+|+||||||++++++|+++|+||++|+|+||.+|+++|+|+|.++.+.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~   53 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL   53 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence            5789999999999999999999999999999999999999999999887653

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.43  E-value=3.7e-13  Score=93.20  Aligned_cols=50  Identities=28%  Similarity=0.405  Sum_probs=46.3

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP  142 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~  142 (166)
                      +.|.|+++||||||++||++|+++||||++|++++. +|+++|+|+|.+++
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~   50 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEE   50 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCc
Confidence            468999999999999999999999999999999965 88999999998765

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=2.5e-12  Score=122.13  Aligned_cols=99  Identities=30%  Similarity=0.347  Sum_probs=83.0

Q ss_pred             cccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcccc
Q 037628            4 FHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVPSQ   83 (166)
Q Consensus         4 ~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~   83 (166)
                      .+++..|.+-+.   +.||.-|-+.|.+. +..+ |.+..+                                       
T Consensus       642 ~~~~~~yflr~~---~~~iawH~~~l~~~-~~~~-~Lv~~~---------------------------------------  677 (867)
T COG2844         642 ARCYANYFLRHS---ARDIAWHARHLVRH-DLGK-PLVLIS---------------------------------------  677 (867)
T ss_pred             HhccccceeecC---HHHHhHHHHHHHhh-hccC-cceeee---------------------------------------
Confidence            478999999999   59999999999998 4333 333320                                       


Q ss_pred             cccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCC
Q 037628           84 KRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSV  147 (166)
Q Consensus        84 ~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~  147 (166)
                       .....+++||+|+|+|+|.||+.++++++..|+||++|+|||+.||+++|+|.|.++.+...+
T Consensus       678 -~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~  740 (867)
T COG2844         678 -VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE  740 (867)
T ss_pred             -ecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc
Confidence             112237899999999999999999999999999999999999999999999999988775555

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.28  E-value=1.2e-11  Score=86.40  Aligned_cols=57  Identities=26%  Similarity=0.332  Sum_probs=50.1

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCCCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLS  149 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~f~  149 (166)
                      +.|.|.++|||||+++|+.+|+.+|++|..|+| +|..+.+.|+|+|.+.++.+...+
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkI-sT~Gerv~DvFyV~d~~g~kl~d~   58 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYI-SSDGGWFMDVFHVTDQLGNKLTDD   58 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEE-eecCCeEEEEEEEECCCCCCCCCH
Confidence            678999999999999999999999999999999 456779999999998877554433

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.24  E-value=2.1e-11  Score=83.88  Aligned_cols=53  Identities=21%  Similarity=0.303  Sum_probs=47.6

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE  144 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~  144 (166)
                      +++|+|+++|+||+|++|+++|+++|+||++|+++++ +++.+++|+|.++++.
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~   53 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGN   53 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCC
Confidence            3689999999999999999999999999999999865 6799999999886653

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=99.24  E-value=6.4e-12  Score=106.81  Aligned_cols=73  Identities=23%  Similarity=0.446  Sum_probs=62.2

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-C-eEEEE-EEEcCC----CCCCCCCCccccceeeEEEEE
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-G-YSLDV-FVVDGW----PVEGSVLSPNVADFAMLWSGY  162 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g-~~ldv-F~V~~~----~~~~~~f~~~a~~f~m~~~~~  162 (166)
                      ...+++++|||++||+++||++|+.+|+||.++++|++.+ | |++++ |...+.    +....+|++.+++|.|+|++.
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~~~   85 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWRLH   85 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeEEe
Confidence            4589999999999999999999999999999999997764 4 78888 887654    223556888999999999975

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.23  E-value=2.8e-11  Score=85.17  Aligned_cols=60  Identities=17%  Similarity=0.139  Sum_probs=51.2

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCCCCcc
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPN  151 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~f~~~  151 (166)
                      ++.|.|.|+|||||+++|+.+|+.+|++|..|+|- |..+.+.|+|+|.+..+.+...+..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~-T~gera~D~FyV~d~~g~kl~~~~~   60 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID-TDGDDAHQEYYIRHKDGRTLSTEGE   60 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe-ecCceEEEEEEEEcCCCCccCCHHH
Confidence            36899999999999999999999999999999995 4666999999999887765544433

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=99.10  E-value=1.5e-10  Score=80.63  Aligned_cols=72  Identities=15%  Similarity=0.152  Sum_probs=55.3

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcCCCC--CCCCCCccccceeeEEEEEE
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDGWPV--EGSVLSPNVADFAMLWSGYR  163 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~~~~--~~~~f~~~a~~f~m~~~~~~  163 (166)
                      ..|++.||||||++++||++|+++|+||.+++++...+-|+++. |.+.....  .+..+++.++++.++.++-|
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~~~~~~l~i~v~~   76 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGLARRLDLTLMMKR   76 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHHHHHcCCEEEEEe
Confidence            57899999999999999999999999999999998444477776 66653211  23346667788887776643

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.07  E-value=2.1e-10  Score=109.50  Aligned_cols=54  Identities=31%  Similarity=0.295  Sum_probs=51.2

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV  143 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~  143 (166)
                      .++++|+|+|+||||||++||++|+.+|+||++|+|+| .+|+++++|+|.++.+
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~  650 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFG  650 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCC
Confidence            68899999999999999999999999999999999997 9999999999998655

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.01  E-value=8.4e-10  Score=77.68  Aligned_cols=53  Identities=19%  Similarity=0.169  Sum_probs=44.4

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEee-cCCCeEEEEEEEcCCCCCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFS-TTDGYSLDVFVVDGWPVEG  145 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~t-t~dg~~ldvF~V~~~~~~~  145 (166)
                      +.|.|.|+|||||+++|+.+|+.+|++|..|+|-+ |....+.|+|+| +..+..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k   54 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK   54 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc
Confidence            35789999999999999999999999999999952 455589999999 544433

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.00  E-value=7.4e-10  Score=107.31  Aligned_cols=59  Identities=17%  Similarity=0.307  Sum_probs=53.2

Q ss_pred             CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCC
Q 037628           87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGS  146 (166)
Q Consensus        87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~  146 (166)
                      ...++++|.|+|+||||||++||++|+.+|+||++|+|+|+ +|+++|+|+|.+.++...
T Consensus       810 ~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l  868 (895)
T PRK00275        810 AQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPL  868 (895)
T ss_pred             CCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCC
Confidence            34578999999999999999999999999999999999887 889999999998776543

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.94  E-value=4.8e-10  Score=79.48  Aligned_cols=72  Identities=8%  Similarity=0.057  Sum_probs=55.2

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcCCCC----CCCCCCccccceeeEEEEEE
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDGWPV----EGSVLSPNVADFAMLWSGYR  163 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~~~~----~~~~f~~~a~~f~m~~~~~~  163 (166)
                      +.|++.|+|+||++++||++|+++|+||.+.++++..+-+++.. +.+.....    .+.++++.+++++|+|.+.+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~~~i~~   78 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKELGVKIRIQH   78 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCEEEEEh
Confidence            57899999999999999999999999999999987433366654 55442011    23456677889999999864

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=98.92  E-value=3.9e-09  Score=70.65  Aligned_cols=53  Identities=26%  Similarity=0.444  Sum_probs=46.6

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG  145 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~  145 (166)
                      +.|.|.++|+||+|++|+++|+.+|+||.++++.+.. ++++++|++.+..+..
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~-~~~~~~f~i~~~~~~~   53 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLG-ERAEDVFYVTDADGQP   53 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecC-CEEEEEEEEECCCCCc
Confidence            4689999999999999999999999999999998654 5899999998866543

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.90  E-value=9.5e-10  Score=75.37  Aligned_cols=67  Identities=28%  Similarity=0.575  Sum_probs=49.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC--eEEEE-EEEcCC----CCCCCCCCccccceeeEE
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG--YSLDV-FVVDGW----PVEGSVLSPNVADFAMLW  159 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg--~~ldv-F~V~~~----~~~~~~f~~~a~~f~m~~  159 (166)
                      .|++.|+||||++++||++|+++|+||.+.+.++...+  +.+.+ +.+...    ...+..+++.+++++|.|
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~   74 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDMDW   74 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCcC
Confidence            37899999999999999999999999999999875444  44444 444321    112344566677777776

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=98.89  E-value=3.5e-09  Score=102.47  Aligned_cols=58  Identities=16%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628           87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG  145 (166)
Q Consensus        87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~  145 (166)
                      ...+.++|.|+|+||||||++||++|+++|+||+.|+|+|. +|.++|+|+|.+.++..
T Consensus       792 ~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~  849 (869)
T PRK04374        792 AGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRP  849 (869)
T ss_pred             CCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCc
Confidence            34578999999999999999999999999999999999886 88999999999877643

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=98.89  E-value=2.2e-09  Score=91.88  Aligned_cols=70  Identities=20%  Similarity=0.393  Sum_probs=56.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CC-eEEEE-EEEcCCCC----CCCCCCc-cccceeeEEEEE
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DG-YSLDV-FVVDGWPV----EGSVLSP-NVADFAMLWSGY  162 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg-~~ldv-F~V~~~~~----~~~~f~~-~a~~f~m~~~~~  162 (166)
                      .||+.|+|+||++|+||++|+++|+||.+.+++.+. .| |+|+. |.+.+...    .+.++++ .++++.|+|++.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~i~l~   79 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMTWELI   79 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCEEEEe
Confidence            689999999999999999999999999999999864 34 66665 66543111    2345777 899999999975

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=98.86  E-value=7.1e-09  Score=100.12  Aligned_cols=55  Identities=22%  Similarity=0.301  Sum_probs=50.1

Q ss_pred             CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCC
Q 037628           87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP  142 (166)
Q Consensus        87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~  142 (166)
                      ...+.++|.|+|+||||||++||++|+.+|+||+.|+|+|+ +|.++|+|+|.+.+
T Consensus       782 ~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~v~DvF~V~~~~  836 (856)
T PRK03059        782 ERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GERVEDTFLIDGSG  836 (856)
T ss_pred             CCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCEEEEEEEEcCCC
Confidence            34578999999999999999999999999999999999986 88999999996554

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=98.84  E-value=2.4e-09  Score=92.03  Aligned_cols=74  Identities=19%  Similarity=0.326  Sum_probs=57.8

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEee--cCCCeEEEE-EEEcCCCC-----CCCCCCccccceeeEEE
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFS--TTDGYSLDV-FVVDGWPV-----EGSVLSPNVADFAMLWS  160 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~t--t~dg~~ldv-F~V~~~~~-----~~~~f~~~a~~f~m~~~  160 (166)
                      ...+.|++.|+|||||.|+||++|+++|+||.+.++++  ..+.|++.+ |....+..     .+.++++.++++.|.|+
T Consensus         7 m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~~~   86 (289)
T PRK13010          7 SPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQWA   86 (289)
T ss_pred             ccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence            34578999999999999999999999999999999984  334588877 55332221     23456778899999999


Q ss_pred             EE
Q 037628          161 GY  162 (166)
Q Consensus       161 ~~  162 (166)
                      +.
T Consensus        87 i~   88 (289)
T PRK13010         87 IH   88 (289)
T ss_pred             Ee
Confidence            75

>PRK03381 PII uridylyl-transferase; Provisional

Probab=98.84  E-value=1.1e-08  Score=98.00  Aligned_cols=56  Identities=27%  Similarity=0.346  Sum_probs=51.3

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG  145 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~  145 (166)
                      .+.++|+|+|+||||||++||++|+.+|+||+.|+|+|. +|.++|+|+|.+.++..
T Consensus       705 ~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~~a~D~F~V~d~~g~~  760 (774)
T PRK03381        705 PDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GADVVDVFYVTGAAGGP  760 (774)
T ss_pred             CCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CCeEEEEEEEECCCCCc
Confidence            467999999999999999999999999999999999876 88999999999877643

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.77  E-value=9.3e-09  Score=70.88  Aligned_cols=68  Identities=13%  Similarity=0.164  Sum_probs=50.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-----C-eEEEE-EEEcCC---CCCCCCCCccccceeeEEEE
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-----G-YSLDV-FVVDGW---PVEGSVLSPNVADFAMLWSG  161 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-----g-~~ldv-F~V~~~---~~~~~~f~~~a~~f~m~~~~  161 (166)
                      |++.|+|+||++++||.+|+++|+||.+...++...     + +++.. +.+...   ...+.++++.+++++|+|.+
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~~~~   79 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDDLNVDISL   79 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcceEEe
Confidence            789999999999999999999999999999988651     3 44444 554321   01133456677888888875

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.76  E-value=2.9e-08  Score=65.68  Aligned_cols=51  Identities=35%  Similarity=0.544  Sum_probs=45.8

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE  144 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~  144 (166)
                      +|.|.++|+||++++|+++|+.+|+||.++++++..+ ...++|.+.++.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~   52 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGR   52 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCC
Confidence            6889999999999999999999999999999988765 88899999876653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PRK00194 hypothetical protein; Validated

Probab=98.70  E-value=1.9e-08  Score=71.21  Aligned_cols=71  Identities=13%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEE-EEEcCCCC----CCCCCCccccceeeEEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDV-FVVDGWPV----EGSVLSPNVADFAMLWSGY  162 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldv-F~V~~~~~----~~~~f~~~a~~f~m~~~~~  162 (166)
                      .+.|++.|+|+||++++++++|+++|+||.+....+ ..| +.+.. +.+...+.    .+..+++..+++.++|.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~   79 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDISESKKDFAELKEELEELGKELGVKIRIQ   79 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            478999999999999999999999999999999986 445 44443 45432111    1234566778888888764

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.67  E-value=1.2e-07  Score=61.97  Aligned_cols=39  Identities=31%  Similarity=0.496  Sum_probs=36.8

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG  130 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg  130 (166)
                      +.|.+.|+||||++++++++|+++|+||..++++++.++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~   39 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG   39 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence            578999999999999999999999999999999998884

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PRK05092 PII uridylyl-transferase; Provisional

Probab=98.60  E-value=1e-07  Score=92.79  Aligned_cols=59  Identities=29%  Similarity=0.318  Sum_probs=52.0

Q ss_pred             CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCC
Q 037628           87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGS  146 (166)
Q Consensus        87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~  146 (166)
                      ...+.++|.|+|+||||||++|+++|+++|+||..|+|.| .++.+.|+|+|.+.++...
T Consensus       839 ~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i  897 (931)
T PRK05092        839 ASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKI  897 (931)
T ss_pred             CCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcC
Confidence            3456799999999999999999999999999999999985 5789999999988766443

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=98.47  E-value=3e-07  Score=88.98  Aligned_cols=60  Identities=23%  Similarity=0.328  Sum_probs=52.2

Q ss_pred             CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCC
Q 037628           87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSV  147 (166)
Q Consensus        87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~  147 (166)
                      .+...+.|.|.|+|||||+++|+.+|+++|++|..|+| +|..+.+.|+|+|.+..+....
T Consensus       779 ~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI-~T~gerv~D~Fyv~~~~g~~l~  838 (854)
T PRK01759        779 EKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKI-TTIGEKAEDFFILTNQQGQALD  838 (854)
T ss_pred             CCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEE-cccCceEEEEEEEECCCCCcCC
Confidence            34568999999999999999999999999999999999 4577799999999987765433

>PRK05007 PII uridylyl-transferase; Provisional

Probab=98.46  E-value=3.4e-07  Score=88.89  Aligned_cols=60  Identities=17%  Similarity=0.282  Sum_probs=52.2

Q ss_pred             CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCC
Q 037628           87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSV  147 (166)
Q Consensus        87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~  147 (166)
                      .+..++.|.|.|+|||||+++|+.+|+.+|++|..|+|. |..+.+.|+|+|.+..+...+
T Consensus       804 ~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~-T~gera~DvFyV~~~~g~~l~  863 (884)
T PRK05007        804 HTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARIT-TIGERVEDLFILATADRRALN  863 (884)
T ss_pred             CCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEe-ccCceEEEEEEEEcCCCCcCC
Confidence            345689999999999999999999999999999999994 567799999999887765433

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.41  E-value=4e-07  Score=62.69  Aligned_cols=66  Identities=17%  Similarity=0.094  Sum_probs=46.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC-----CCCCCCccccceeeEEE
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV-----EGSVLSPNVADFAMLWS  160 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~-----~~~~f~~~a~~f~m~~~  160 (166)
                      |++.++||||+.+++|++|+++|+||.+..+-+ .+|.+.-.+.+..+..     .+.+++..+++.+++..
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~-~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l~i~   72 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAV-IHGRLSLGILVQIPDSADSEALLKDLLFKAHELGLQVR   72 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEE-EcCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCceEE
Confidence            789999999999999999999999999998644 4565444566665433     12234444555554443

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=98.37  E-value=6.7e-07  Score=76.82  Aligned_cols=71  Identities=18%  Similarity=0.275  Sum_probs=54.7

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-C-eEEEEEEEcCCCC-----CCCCCCccccceeeEEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-G-YSLDVFVVDGWPV-----EGSVLSPNVADFAMLWSGY  162 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g-~~ldvF~V~~~~~-----~~~~f~~~a~~f~m~~~~~  162 (166)
                      .+.|++.|+||||++++||++|+++|+||.+..++++.. + |.+ .+.+..+.+     .+..+++.+++++|+|++.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m-~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~i~   84 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFM-RVEFHSEEGLDEDALRAGFAPIAARFGMQWELH   84 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEE-EEEEecCCCCCHHHHHHHHHHHHHHhCcEEEEe
Confidence            578999999999999999999999999999999986543 3 444 344432222     2345677888999999876

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.35  E-value=1.7e-06  Score=59.90  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=36.7

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG  140 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~  140 (166)
                      ...|++.++||||++++++++|+.+|+||.+.++.+ .+|.+.-.+.|+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~   50 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSI   50 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEE
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEe
Confidence            367999999999999999999999999999999976 4554444444443

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=98.13  E-value=3.2e-06  Score=72.51  Aligned_cols=71  Identities=25%  Similarity=0.390  Sum_probs=52.9

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCC-eEEEE-EEEcC-C---CCCCCCCCccccceeeEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDG-YSLDV-FVVDG-W---PVEGSVLSPNVADFAMLWSG  161 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg-~~ldv-F~V~~-~---~~~~~~f~~~a~~f~m~~~~  161 (166)
                      ...|++.|+||||+++.||++|+++|+||.+....+. ..| |.+.. +.++. +   ...+.++++.+++++++|.+
T Consensus         6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l~i~l   83 (286)
T PRK06027          6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFEMDWRL   83 (286)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCCEEEE
Confidence            4789999999999999999999999999999999762 334 44443 44411 1   11244577778888888875

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=98.12  E-value=9.4e-06  Score=78.39  Aligned_cols=58  Identities=22%  Similarity=0.287  Sum_probs=50.8

Q ss_pred             CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628           87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG  145 (166)
Q Consensus        87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~  145 (166)
                      .+...+.|.|.|+|||||++.|+.+|+.+|+||..|+|.| ..+.+.|+|+|++..+..
T Consensus       775 ~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t-~~~~~~d~F~v~~~~g~~  832 (850)
T TIGR01693       775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITT-FGEKAEDVFYVTDLFGLK  832 (850)
T ss_pred             CCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEe-cCccceeEEEEECCCCCC
Confidence            3456899999999999999999999999999999999976 456889999998766543

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=97.99  E-value=9.7e-06  Score=66.04  Aligned_cols=52  Identities=13%  Similarity=0.220  Sum_probs=42.4

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      .....|++.++|||||+++||++|+++||||.+.++ +.-.|.|--++.|..+
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~-t~lgg~Fa~i~lvs~~   57 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRL-AMLGEEFTFIMLLSGS   57 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhh-HhhCCceEEEEEEeCC
Confidence            356899999999999999999999999999999998 4456655555555543

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=2.6e-05  Score=75.07  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=48.8

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE  144 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~  144 (166)
                      ..+.+.+.+.|||||+++++++|+.+|++|+.|+| +|-+..+.|+|+|++..+.
T Consensus       790 ~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkI-tT~GErveD~F~vt~~~~~  843 (867)
T COG2844         790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI-TTFGERVEDVFIVTDADGQ  843 (867)
T ss_pred             CceEEEEEeCCcccHHHHHHHHHHhcccceeeeee-ccccccceeEEEEeccccc
Confidence            57899999999999999999999999999999999 4566689999999987653

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.91  E-value=6.4e-05  Score=51.77  Aligned_cols=48  Identities=25%  Similarity=0.431  Sum_probs=37.5

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVV  138 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V  138 (166)
                      .+.|.|.+.||||+++.|+.++++.|+||.+.++.+.. +|.+.-.|.+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v   54 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTV   54 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEE
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEE
Confidence            47899999999999999999999999999999998874 6755544443

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.80  E-value=0.00013  Score=46.96  Aligned_cols=47  Identities=17%  Similarity=0.394  Sum_probs=40.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG  140 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~  140 (166)
                      |.+..+|+||.+++++..|+++|+||.....+...++..+-.|.+++
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            35688999999999999999999999999998766567777777765

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.69  E-value=0.00028  Score=47.39  Aligned_cols=45  Identities=13%  Similarity=0.349  Sum_probs=37.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEE
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV  138 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V  138 (166)
                      |.+.++|+||+|+.|+.++++.|.||.+.+.-+..+|.+...|.+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~v   46 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITV   46 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEE
Confidence            678899999999999999999999999988866556755444444

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=97.68  E-value=8e-05  Score=60.69  Aligned_cols=73  Identities=14%  Similarity=0.049  Sum_probs=53.9

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC---CC--eEEEEEEEcCCCC-----CCCCCCccccceeeEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT---DG--YSLDVFVVDGWPV-----EGSVLSPNVADFAMLWS  160 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~---dg--~~ldvF~V~~~~~-----~~~~f~~~a~~f~m~~~  160 (166)
                      .+.++++.+|||||++++|++|+++|+||.+-+..+-.   .|  .+.-.+.+.-+.+     .+.+|+..+++++.+..
T Consensus        95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL~vd~~  174 (190)
T PRK11589         95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTELNAQGS  174 (190)
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHhCceEE
Confidence            48999999999999999999999999999977665443   34  3444477665544     23446677777777765


Q ss_pred             EEE
Q 037628          161 GYR  163 (166)
Q Consensus       161 ~~~  163 (166)
                      +..
T Consensus       175 l~~  177 (190)
T PRK11589        175 INV  177 (190)
T ss_pred             EEE
Confidence            544

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.63  E-value=0.0003  Score=46.93  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=35.1

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG  130 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg  130 (166)
                      ..|+|..+|+||.+++++.+|+++|+||....++...+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~   40 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF   40 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence            468899999999999999999999999999999876553

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.61  E-value=0.00016  Score=48.26  Aligned_cols=49  Identities=24%  Similarity=0.460  Sum_probs=39.7

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCCeEEEEEEEcC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDGYSLDVFVVDG  140 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg~~ldvF~V~~  140 (166)
                      +.+.+..+|+||.+++++.+|+++|+||.+...+.. ..+...-+|.++.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~   51 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT   51 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence            578999999999999999999999999998876554 3445555577654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.54  E-value=0.00046  Score=44.99  Aligned_cols=45  Identities=22%  Similarity=0.216  Sum_probs=35.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC----CCeEEEEEEE
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT----DGYSLDVFVV  138 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~----dg~~ldvF~V  138 (166)
                      +.|.++|+||++++|+.+|++.|+||.+.......    .+...-.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v   49 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTL   49 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEE
Confidence            35788999999999999999999999988876543    3544433444

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.51  E-value=0.00015  Score=52.74  Aligned_cols=47  Identities=21%  Similarity=0.396  Sum_probs=38.0

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEc
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD  139 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~  139 (166)
                      ..|||...||||+.+.++++|+++|.||++-.+ |--+|++-=.+.|+
T Consensus         4 avITV~GkDr~GIva~is~vLAe~~vNIldisQ-tvm~~~ftm~~lV~   50 (90)
T COG3830           4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQ-TVMDGFFTMIMLVD   50 (90)
T ss_pred             EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHH-HHHhhhceeeeEEc
Confidence            679999999999999999999999999998777 44677443333333

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=97.50  E-value=0.0008  Score=43.91  Aligned_cols=49  Identities=22%  Similarity=0.365  Sum_probs=39.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      +|.+.++|+||.+++++..|+++++||......+..++...-++.+.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~   50 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV   50 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc
Confidence            6889999999999999999999999999988865544544334666543

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.47  E-value=0.00074  Score=43.61  Aligned_cols=47  Identities=23%  Similarity=0.415  Sum_probs=39.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEEcC
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVVDG  140 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V~~  140 (166)
                      +.+.++|++|++++++.+|+++|+||.+....... ++...-.|.+++
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~   49 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS   49 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence            67899999999999999999999999999997755 466666677744

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.37  E-value=0.0012  Score=43.77  Aligned_cols=48  Identities=15%  Similarity=0.412  Sum_probs=37.9

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEc
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVD  139 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~  139 (166)
                      +.+.+.++|+||.++++++.|+++|+||.+...+....+ .....+.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            578899999999999999999999999998887765333 223345554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.36  E-value=0.00081  Score=44.60  Aligned_cols=48  Identities=27%  Similarity=0.453  Sum_probs=39.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCCeEEEEEEEcCC
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDGYSLDVFVVDGW  141 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg~~ldvF~V~~~  141 (166)
                      +++..+|+||.++++++.|+++|+||.+...... .++...-+|.++.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~   50 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP   50 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC
Confidence            5678999999999999999999999998877654 34566667888763

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=97.33  E-value=0.0015  Score=42.33  Aligned_cols=48  Identities=25%  Similarity=0.317  Sum_probs=38.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCCeEEEEEEEcCC
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDGYSLDVFVVDGW  141 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg~~ldvF~V~~~  141 (166)
                      |.+.++|+||.+++++..|+++|+||........ .++...-.+.+.+.
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~   50 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP   50 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC
Confidence            5788999999999999999999999999988763 34555444776654

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.29  E-value=0.0018  Score=41.96  Aligned_cols=49  Identities=31%  Similarity=0.449  Sum_probs=39.8

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCCeEEEEEEEcC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDGYSLDVFVVDG  140 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg~~ldvF~V~~  140 (166)
                      |.|.+.+.|+||+++.++.+|+++|+||......+. .++.+.-.|.+..
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   50 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG   50 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence            357889999999999999999999999999998765 4555555566653

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.29  E-value=0.0012  Score=42.83  Aligned_cols=47  Identities=28%  Similarity=0.427  Sum_probs=38.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEEcC
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVVDG  140 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V~~  140 (166)
                      +.+..+|+||-++++++.|+++|+||.....+... .|...-.|.+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            56788999999999999999999999988876654 355555577754

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02828 formyltetrahydrofolate deformylase

Probab=97.23  E-value=8.6e-05  Score=63.55  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=43.0

Q ss_pred             HHHHHHHCCCcEEEEEEeecCCC--eEEEE-EEEcCC----CCCCCCCCccccceee---EEEEE
Q 037628          108 LSALLSDIGLNIREAHVFSTTDG--YSLDV-FVVDGW----PVEGSVLSPNVADFAM---LWSGY  162 (166)
Q Consensus       108 It~~La~~glNI~~A~i~tt~dg--~~ldv-F~V~~~----~~~~~~f~~~a~~f~m---~~~~~  162 (166)
                      ||++|+++|+||.++++|++.++  |+|++ |...+.    ...+..|++.+++|.|   +|++.
T Consensus         1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (268)
T PLN02828          1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVP   65 (268)
T ss_pred             CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEc
Confidence            57899999999999999998765  78888 876531    1224567889999999   77764

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.23  E-value=0.002  Score=43.20  Aligned_cols=48  Identities=13%  Similarity=0.157  Sum_probs=38.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG  140 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~  140 (166)
                      .+.+.++|+||++++|++.|+..|+||....+.+..+|.+--.|.+..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v   49 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT   49 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence            578999999999999999999999999998875544564443466643

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.18  E-value=0.0027  Score=37.54  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=31.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT  128 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~  128 (166)
                      |.+.++|++|++++++++|+.+|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999886543

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.14  E-value=0.0026  Score=50.51  Aligned_cols=49  Identities=29%  Similarity=0.356  Sum_probs=42.4

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEEcC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVVDG  140 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V~~  140 (166)
                      +.|.+...|+||.+++|+++|+..|+||.+-.+..+. +|...-+++|++
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~   51 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG   51 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC
Confidence            5789999999999999999999999999999998876 466655688865

acetohydroxyacid synthase is a synonym.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.11  E-value=0.0013  Score=45.17  Aligned_cols=48  Identities=29%  Similarity=0.362  Sum_probs=41.7

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDGW  141 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~~  141 (166)
                      ++|+|.|||+.||=..++.++-+.|++|..++.-  .|| ..+-+|+|...
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkWCyiv~wVv~~   49 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRWCYIVFWVVPR   49 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcEEEEEEEEecC
Confidence            4799999999999999999999999999999984  355 78888887653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.09  E-value=0.0027  Score=43.27  Aligned_cols=35  Identities=11%  Similarity=0.245  Sum_probs=32.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST  127 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt  127 (166)
                      .|.|.+.||+|+++.|+.+++..|.||...++.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.05  E-value=0.0011  Score=44.64  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST  127 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt  127 (166)
                      +.+..+|+||-+++++..|+++|+||.+...+..
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998877654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=97.03  E-value=0.0038  Score=49.77  Aligned_cols=49  Identities=31%  Similarity=0.409  Sum_probs=42.0

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEEcC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVVDG  140 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V~~  140 (166)
                      +.|.+...|+||.+++|+++|+.+|+||.+-.+..+. +|..--++++++
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~   52 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG   52 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC
Confidence            6789999999999999999999999999999888776 466555577764

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=97.00  E-value=0.00079  Score=44.37  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      |++.+.|+||++++++..|+..|+||......+ .+|.+.-.|.++..
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~~~~   48 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDIDSE   48 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEcCCC
Confidence            678999999999999999999999998876543 23666656776554

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.96  E-value=0.0053  Score=40.42  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=35.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-CeEEEEEEEc
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVD  139 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g~~ldvF~V~  139 (166)
                      |.+.+.|++|++++++.+|+.+|+||.........+ +.+.-.+.+.
T Consensus         3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~   49 (79)
T cd04881           3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH   49 (79)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence            678899999999999999999999999988754444 5443334443

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.88  E-value=0.005  Score=43.42  Aligned_cols=48  Identities=13%  Similarity=0.227  Sum_probs=38.9

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEc
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVD  139 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~  139 (166)
                      +.|.+...|+||++++++++++..|.||.+-.+-.+.+.-..+. +.+.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~   51 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV   51 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE
Confidence            67899999999999999999999999999988876665433333 5543

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.87  E-value=0.0062  Score=42.89  Aligned_cols=48  Identities=15%  Similarity=0.385  Sum_probs=41.6

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEc
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVD  139 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~  139 (166)
                      +.|.+...++||.+++++++++..|.||.+-..-.+.++-..+. +.|.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~   52 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA   52 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC
Confidence            67899999999999999999999999999999988777744554 7774

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.87  E-value=0.0076  Score=41.53  Aligned_cols=39  Identities=21%  Similarity=0.445  Sum_probs=33.7

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG  130 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg  130 (166)
                      +.+++..+|+||.++++...|+++|+||.+-......++
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~   40 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGG   40 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCC
Confidence            357778899999999999999999999999887766554

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.82  E-value=0.008  Score=37.41  Aligned_cols=46  Identities=17%  Similarity=0.425  Sum_probs=35.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEc
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD  139 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~  139 (166)
                      |.+.++|+||.++.++.+|+.+++||.+..+....+++..-.|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            4578999999999999999999999999988654435443334443

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=96.79  E-value=0.0022  Score=61.33  Aligned_cols=50  Identities=24%  Similarity=0.167  Sum_probs=44.4

Q ss_pred             EEEEEEe-cCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628           92 HEVVFST-VDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV  143 (166)
Q Consensus        92 ~eI~I~~-~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~  143 (166)
                      ..++|.. +|++|++++++++|+.+|++|.+|.+.+  +|.....|.|....+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~  597 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGP  597 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCC
Confidence            5777777 9999999999999999999999999976  887888899987555

>PRK08577 hypothetical protein; Provisional

Probab=96.79  E-value=0.011  Score=44.99  Aligned_cols=52  Identities=17%  Similarity=0.282  Sum_probs=41.2

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEE--EEEcC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDV--FVVDG  140 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldv--F~V~~  140 (166)
                      ...+.|.+.+.|+||+++.++++|+++|.||.+....+.. ++++.-.  +.+.+
T Consensus        54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~  108 (136)
T PRK08577         54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSK  108 (136)
T ss_pred             ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCC
Confidence            4578999999999999999999999999999998886655 4544333  44443

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.78  E-value=0.0055  Score=44.13  Aligned_cols=48  Identities=19%  Similarity=0.222  Sum_probs=40.0

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEc
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVD  139 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~  139 (166)
                      +.|.+...|+||+++++|++|+..|.||.+-.+-.|.+. +.--++++.
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~   51 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD   51 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence            578999999999999999999999999999998776664 443446664

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.78  E-value=0.0075  Score=44.44  Aligned_cols=50  Identities=14%  Similarity=0.295  Sum_probs=40.8

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEc
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVD  139 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~  139 (166)
                      +-+.|.+...|+||++++||++|+..|.||.+-.+-.+.+.-.-+. ..+.
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~   57 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN   57 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc
Confidence            4588999999999999999999999999999988877766533333 4554

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.74  E-value=0.0058  Score=49.31  Aligned_cols=49  Identities=24%  Similarity=0.337  Sum_probs=39.6

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDG  140 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~  140 (166)
                      +.|.+...|+||++++||++|+..|.||.+-.+..+.+. ..--++.+.+
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~   52 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG   52 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC
Confidence            679999999999999999999999999999999765554 3322255544

>PRK04435 hypothetical protein; Provisional

Probab=96.62  E-value=0.013  Score=45.63  Aligned_cols=52  Identities=17%  Similarity=0.155  Sum_probs=42.2

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG  140 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~  140 (166)
                      +....|.+.+.|+||++++|++.|+..|+||...++....+|.+--.|.+..
T Consensus        67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev  118 (147)
T PRK04435         67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT  118 (147)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence            4568999999999999999999999999999998885545675544466544

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.44  E-value=0.008  Score=48.98  Aligned_cols=49  Identities=27%  Similarity=0.428  Sum_probs=42.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcCC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDGW  141 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~~  141 (166)
                      -+.|.+.++||.+..+|+.++++|.||..||+|.-.|| ..+--|.+.+-
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi   53 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI   53 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC
Confidence            36788899999999999999999999999999999999 55555777653

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=96.10  E-value=0.0025  Score=45.14  Aligned_cols=69  Identities=19%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             EEEEEecC-CCchHHHHHHHHHHCCCcEEEEEEeecCC--------CeEEEEEEEcCCCCC----CCCCCccccceeeEE
Q 037628           93 EVVFSTVD-KPKLLSQLSALLSDIGLNIREAHVFSTTD--------GYSLDVFVVDGWPVE----GSVLSPNVADFAMLW  159 (166)
Q Consensus        93 eI~I~~~D-rpGLfa~It~~La~~glNI~~A~i~tt~d--------g~~ldvF~V~~~~~~----~~~f~~~a~~f~m~~  159 (166)
                      .||+..+| +.|+++++|++|+++|+||..-+..+..-        ...+-.|.|.++...    ..++...+++..++.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~elgvDI   80 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASELNVDI   80 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhcccCceE
Confidence            37999999 99999999999999999999766643211        122334777655432    222445566666666


Q ss_pred             EE
Q 037628          160 SG  161 (166)
Q Consensus       160 ~~  161 (166)
                      .+
T Consensus        81 av   82 (84)
T cd04871          81 AF   82 (84)
T ss_pred             EE
Confidence            54

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.93  E-value=0.0062  Score=49.25  Aligned_cols=51  Identities=16%  Similarity=0.219  Sum_probs=40.0

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG  140 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~  140 (166)
                      .++..|+++..|+||+...||...+++||||.++++-. -.+.+.-+..+.+
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~-~g~~~a~i~lisg   53 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM-LGEEFAGIMLISG   53 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH-hhcceeEEEEEee
Confidence            35689999999999999999999999999999999943 4443333433433

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.83  E-value=0.055  Score=36.58  Aligned_cols=36  Identities=22%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC
Q 037628           94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD  129 (166)
Q Consensus        94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d  129 (166)
                      +.+..+|+||-++.+...|+.+|+||..-+......
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~   37 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRK   37 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCC
Confidence            567779999999999999999999999887665444

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK07334 threonine dehydratase; Provisional

Probab=95.54  E-value=0.059  Score=47.99  Aligned_cols=50  Identities=18%  Similarity=0.261  Sum_probs=40.5

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec----CCCeEE-EE-EEEcC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST----TDGYSL-DV-FVVDG  140 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt----~dg~~l-dv-F~V~~  140 (166)
                      ...|.|.+.||+|+|++|+.+|++.++||.+.+..+.    .++.+. .+ +.|.+
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d  381 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD  381 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence            4799999999999999999999999999999998654    456543 33 55544

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.44  E-value=0.087  Score=43.15  Aligned_cols=52  Identities=15%  Similarity=0.163  Sum_probs=44.1

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-CeEEEEEEEcCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVDGW  141 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g~~ldvF~V~~~  141 (166)
                      .++.+.+.-.|+||...+|+.+|.++|+||-..++-.... |-++-+..++.+
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~  199 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKN  199 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCC
Confidence            4578888889999999999999999999999999976544 478878888754

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.21  E-value=0.07  Score=35.83  Aligned_cols=41  Identities=27%  Similarity=0.437  Sum_probs=32.0

Q ss_pred             CCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcC
Q 037628          100 DKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDG  140 (166)
Q Consensus       100 DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~  140 (166)
                      |+||.+.+|++++...|.||.+-.+..+.++-..++ +.+.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~   42 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG   42 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee
Confidence            689999999999999999999999987666634444 66665

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=95.06  E-value=0.076  Score=41.02  Aligned_cols=50  Identities=22%  Similarity=0.276  Sum_probs=45.4

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      -.+-+-.+|+||=+++|+++|..+++|+--+..|++...-++-++.+++-
T Consensus        70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~  119 (142)
T COG4747          70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDI  119 (142)
T ss_pred             eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHH
Confidence            36778899999999999999999999999999999999888888888764

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.78  E-value=0.12  Score=50.14  Aligned_cols=50  Identities=16%  Similarity=0.140  Sum_probs=40.6

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEE--EEEcC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDV--FVVDG  140 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldv--F~V~~  140 (166)
                      ...|.|.+.||+||++.|+.+|+..++||.+.++-+.. ++++.-.  +.|.+
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~  718 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN  718 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence            46899999999999999999999999999999987654 6654433  55544

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.30  E-value=0.18  Score=48.57  Aligned_cols=50  Identities=16%  Similarity=0.194  Sum_probs=40.4

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEE-EE-EEEcC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSL-DV-FVVDG  140 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~l-dv-F~V~~  140 (166)
                      .+.|.|.+.||+|+++.|+.+|+..++||.+++.-+..++++. .. +.|.+
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~  677 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD  677 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence            4688999999999999999999999999999998665556543 32 55544

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.15  E-value=0.082  Score=47.49  Aligned_cols=51  Identities=18%  Similarity=0.289  Sum_probs=44.2

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      +.+.|++.-+|+||.+++|+++|+++|+||...+..+ ..+.++-++.+++.
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~D~~  387 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDVDAD  387 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEeCCC
Confidence            5688999999999999999999999999999888854 44788888888763

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=93.92  E-value=0.24  Score=47.52  Aligned_cols=51  Identities=18%  Similarity=0.249  Sum_probs=40.8

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEE-EE-EEEcC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSL-DV-FVVDG  140 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~l-dv-F~V~~  140 (166)
                      -.+.|.|.+.||+|+++.|+.+|+..++||.+.+.-+..++++. .. +.|.+
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~  661 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN  661 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence            35689999999999999999999999999999998665456443 33 55544

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=93.82  E-value=0.11  Score=42.01  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             CCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEE
Q 037628           88 LVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAH  123 (166)
Q Consensus        88 ~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~  123 (166)
                      ..-.+.+-+.+.||||++.++|.+|..+|+||-+-.
T Consensus        89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~  124 (176)
T COG2716          89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLV  124 (176)
T ss_pred             CCceEEEEEEecCCccHHHHHHHHHHhcCCchhhce
Confidence            345678999999999999999999999999997543

>PRK06545 prephenate dehydrogenase; Validated

Probab=93.81  E-value=0.14  Score=44.93  Aligned_cols=42  Identities=14%  Similarity=0.442  Sum_probs=37.3

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG  130 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg  130 (166)
                      ...++|.|.-+|+||-+++|++.|+..|+||.+-+|.-..++
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~  329 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARED  329 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCC
Confidence            457999999999999999999999999999999999655443

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.30  E-value=0.11  Score=34.82  Aligned_cols=29  Identities=28%  Similarity=0.364  Sum_probs=26.2

Q ss_pred             EEEecCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628           95 VFSTVDKPKLLSQLSALLSDIGLNIREAHV  124 (166)
Q Consensus        95 ~I~~~DrpGLfa~It~~La~~glNI~~A~i  124 (166)
                      .+.-|||||=|.+++.+|+. |.||.+-+-
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~   30 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHY   30 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEE
Confidence            56779999999999999999 999998755

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06382 threonine dehydratase; Provisional

Probab=93.26  E-value=0.37  Score=42.99  Aligned_cols=53  Identities=23%  Similarity=0.266  Sum_probs=41.6

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe----ecCCCeEEEEEEEcCC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF----STTDGYSLDVFVVDGW  141 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~----tt~dg~~ldvF~V~~~  141 (166)
                      ...+.+.|..+|+||-|++++..|.++|+||.+...+    ....+...-+|.++..
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~  384 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR  384 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence            4568999999999999999999999999999987664    3344555555666543

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=93.24  E-value=0.17  Score=40.67  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=30.5

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHV  124 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i  124 (166)
                      .+..+|.....+.||+++.+++.++.+|++|.++-.
T Consensus        93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence            355666666788899999999999999999998765

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=93.05  E-value=0.69  Score=33.30  Aligned_cols=40  Identities=13%  Similarity=0.216  Sum_probs=33.8

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD  129 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d  129 (166)
                      +.+.|.+..+|+||-|+++-+.|+.+|+|+..-.......
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~   52 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRL   52 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCC
Confidence            4578888889999999999999999999999776655433

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=92.89  E-value=0.47  Score=42.37  Aligned_cols=41  Identities=22%  Similarity=0.289  Sum_probs=35.0

Q ss_pred             CeEEEEEEec-CCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628           90 PIHEVVFSTV-DKPKLLSQLSALLSDIGLNIREAHVFSTTDG  130 (166)
Q Consensus        90 ~~~eI~I~~~-DrpGLfa~It~~La~~glNI~~A~i~tt~dg  130 (166)
                      ..+.|.+..+ |+||.+++|++.|+.+|+||..-++.....+
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~  335 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAG  335 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCc
Confidence            4678888887 9999999999999999999998888544444

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=92.18  E-value=0.56  Score=36.33  Aligned_cols=49  Identities=24%  Similarity=0.361  Sum_probs=37.0

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      -+|.+...++||-++.++..|+++|+||..-.|-. ...|-+-...|+.+
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAd-t~dFGIiRmvV~~~   52 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIAD-TGDFGIIRMVVDRP   52 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEecc-ccCcceEEEEcCCh
Confidence            36889999999999999999999999999766633 33354444555543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.92  E-value=0.37  Score=44.59  Aligned_cols=52  Identities=25%  Similarity=0.401  Sum_probs=43.4

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-CeEEEEEEEcCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVDGW  141 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g~~ldvF~V~~~  141 (166)
                      .++.+.+..+|+||.+++++..|+.+++||-..++..... |.++-++.++..
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~  503 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDP  503 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCC
Confidence            4567777889999999999999999999999998875444 478888888764

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=91.72  E-value=0.72  Score=31.42  Aligned_cols=38  Identities=16%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG  130 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg  130 (166)
                      .|.+..+|+||-++.+-+.|+.+|+|+..-.......+
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~   39 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRN   39 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence            46677799999999999999999999997766654443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.67  E-value=0.37  Score=32.19  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=28.3

Q ss_pred             CeEEEEEEec----CCCchHHHHHHHHHHCCCcEEEEE
Q 037628           90 PIHEVVFSTV----DKPKLLSQLSALLSDIGLNIREAH  123 (166)
Q Consensus        90 ~~~eI~I~~~----DrpGLfa~It~~La~~glNI~~A~  123 (166)
                      +...|+|..+    |.||+.+++++.|++.|+||...-
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            4567888888    799999999999999999998644

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=90.83  E-value=0.85  Score=44.12  Aligned_cols=52  Identities=19%  Similarity=0.313  Sum_probs=41.5

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeE-EEE-EEEcC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYS-LDV-FVVDG  140 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~-ldv-F~V~~  140 (166)
                      .-.+.|.|.+-||+|||+.|+.+|+..+.||.....-++.++++ ++. +.|.+
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n  678 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN  678 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence            34679999999999999999999999999999999987644433 333 45543

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=90.65  E-value=0.45  Score=44.07  Aligned_cols=52  Identities=21%  Similarity=0.328  Sum_probs=43.1

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDGW  141 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~~  141 (166)
                      .++.+.+...|+||..++++..|+++++||-..++.....| .++-++.++..
T Consensus       450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~  502 (525)
T TIGR01327       450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP  502 (525)
T ss_pred             CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC
Confidence            34567777899999999999999999999998888755544 78888888764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=90.43  E-value=1.4  Score=30.49  Aligned_cols=38  Identities=18%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG  130 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg  130 (166)
                      .+.+..+|+||-++++-..|+.+|+|+..-........
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~   39 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRR   39 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCC
Confidence            46677799999999999999999999997766654443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=90.10  E-value=1.3  Score=38.84  Aligned_cols=36  Identities=17%  Similarity=0.093  Sum_probs=32.0

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF  125 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~  125 (166)
                      ....+.|..+|+||.|++++..+++.|.||.+-...
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            345899999999999999999999999999987543

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=89.62  E-value=1.5  Score=32.97  Aligned_cols=37  Identities=14%  Similarity=0.149  Sum_probs=32.1

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST  127 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt  127 (166)
                      -+.+.+..+|+||-|+.+-..|+.+|+|+..-.....
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~   77 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPS   77 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcC
Confidence            4778888899999999999999999999997666544

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=89.43  E-value=1.8  Score=26.57  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             ecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628           98 TVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG  140 (166)
Q Consensus        98 ~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~  140 (166)
                      .++.+|.++++.+.|+.+|+||....+....+|..--+|.+..
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~   50 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK   50 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence            5889999999999999999999876664333342222366643

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=89.04  E-value=1  Score=36.18  Aligned_cols=50  Identities=26%  Similarity=0.304  Sum_probs=40.9

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDG  140 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~  140 (166)
                      .+.+.+.-.|.||.+++++|.++..|.||-+--+-.|.+.-..+. +++.+
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g   54 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG   54 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC
Confidence            478888999999999999999999999999988876665544444 66655

>PRK08198 threonine dehydratase; Provisional

Probab=88.95  E-value=1  Score=39.95  Aligned_cols=38  Identities=16%  Similarity=0.269  Sum_probs=34.1

Q ss_pred             CCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628           88 LVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF  125 (166)
Q Consensus        88 ~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~  125 (166)
                      ......+.|.-+|+||-|+++...++..|.||.+-...
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            34567999999999999999999999999999998775

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=87.84  E-value=3.7  Score=43.04  Aligned_cols=98  Identities=17%  Similarity=0.167  Sum_probs=71.3

Q ss_pred             cccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcccc
Q 037628            4 FHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVPSQ   83 (166)
Q Consensus         4 ~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~   83 (166)
                      +.+|..|.-++.+   +.-+.+...|+.+..+. +..+..  .+                      .             
T Consensus       444 ~aFp~~Yre~f~p---~~Av~Di~~le~l~~~~-~~~~~l--~~----------------------~-------------  482 (1528)
T PF05088_consen  444 NAFPASYREDFSP---EEAVRDIERLESLSGEG-PLAVDL--YR----------------------P-------------  482 (1528)
T ss_pred             HhCCHHHHhhCCc---hhHHHHHHHHHhhcCCC-CceEEE--ec----------------------c-------------
Confidence            4689999999997   66677888888886533 233322  22                      0             


Q ss_pred             cccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC--CC--eEEEEEEEcCCCC
Q 037628           84 KRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT--DG--YSLDVFVVDGWPV  143 (166)
Q Consensus        84 ~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~--dg--~~ldvF~V~~~~~  143 (166)
                       .....+.+.+.|+.+.++..|+++.-+|...|+.|.+.+-|.-.  +|  +.+-.|.+....+
T Consensus       483 -~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~  545 (1528)
T PF05088_consen  483 -AGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDG  545 (1528)
T ss_pred             -CCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCC
Confidence             11123468999999999999999999999999999998877543  44  5556688877655

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.28  E-value=3.2  Score=28.87  Aligned_cols=46  Identities=13%  Similarity=0.130  Sum_probs=31.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC--eEEEEEEEcC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG--YSLDVFVVDG  140 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg--~~ldvF~V~~  140 (166)
                      .+.+.-||+||=|++++.+|+  +.||.+..--....+  .++-++.+.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~   50 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVAN   50 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCC
Confidence            367788999999999999999  788885444222223  3333466655

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=87.18  E-value=2.7  Score=36.15  Aligned_cols=40  Identities=15%  Similarity=0.258  Sum_probs=34.7

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG  130 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg  130 (166)
                      -+.|.+..+|+||.|..+-+.|+.+|+|+..-...-+.++
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~  233 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGS  233 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCC
Confidence            5778888899999999999999999999997777665555

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=86.58  E-value=0.74  Score=39.79  Aligned_cols=52  Identities=27%  Similarity=0.296  Sum_probs=39.7

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDGW  141 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~~  141 (166)
                      .-|.|-+...|.||++++|+|+|+..|.||-+.-+--+.+- .+--+.++.+.
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gt  128 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGT  128 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEecc
Confidence            45788888899999999999999999999998877655554 22123555553

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=83.16  E-value=5  Score=25.68  Aligned_cols=42  Identities=24%  Similarity=0.371  Sum_probs=29.8

Q ss_pred             ecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEE-EEEEcC
Q 037628           98 TVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLD-VFVVDG  140 (166)
Q Consensus        98 ~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ld-vF~V~~  140 (166)
                      .+|.+|.++++...|+..|+||.-..+.....+ ... +|.+..
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~   51 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPK   51 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecH
Confidence            578999999999999999999985544322232 233 366643

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=82.83  E-value=4.8  Score=34.90  Aligned_cols=51  Identities=20%  Similarity=0.324  Sum_probs=38.7

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG  140 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~  140 (166)
                      .-+.|.+..+|+||-|.++-+.|+.+|+|...-...-+..+.--=.|.++-
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~  243 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI  243 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence            478899999999999999999999999999865555444443333355543

>PRK06349 homoserine dehydrogenase; Provisional

Probab=80.49  E-value=6.2  Score=35.58  Aligned_cols=37  Identities=19%  Similarity=0.327  Sum_probs=33.0

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST  127 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt  127 (166)
                      -+-|.+...|+||.+++|+++|+.+|.||.+..+-..
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~  384 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA  384 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC
Confidence            4788899999999999999999999999998877543

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=80.36  E-value=7.5  Score=30.63  Aligned_cols=48  Identities=17%  Similarity=0.183  Sum_probs=40.1

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEE
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFV  137 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~  137 (166)
                      ..+.+.++-.||.|.++++-.++++.++||+.-++----+|.+=-+..
T Consensus        71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtls  118 (150)
T COG4492          71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLS  118 (150)
T ss_pred             eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEE
Confidence            457889999999999999999999999999999996666775543333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.27
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.1
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	99.08
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	99.03
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	99.02
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	99.01
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	98.99
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.98
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.92
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.84
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.74
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.01
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.51
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.28
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.01
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.96
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.34
2f06_A	144	Conserved hypothetical protein; structural genomic	96.31
2f06_A	144	Conserved hypothetical protein; structural genomic	96.28
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.36
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	94.9
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	92.81
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	90.25
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	88.63
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	83.97
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	83.02
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	80.42
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	80.23

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.27  E-value=4.1e-12  Score=101.01  Aligned_cols=70  Identities=16%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC--------CCCCCCccccceeeEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV--------EGSVLSPNVADFAMLWSG  161 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~--------~~~~f~~~a~~f~m~~~~  161 (166)
                      .++|+|+|+||||||++||++|+++|+||++|+++++.++|+|.+ .|..+..        .+..+.+.++++.|.|.+
T Consensus         5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~-~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~   82 (195)
T 2nyi_A            5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIV-LVSLNAKDGKLIQSALESALPGFQISTRRASSV   82 (195)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEE-EEEESSSSSHHHHHHHHHHSTTCEEEEEECCCC
T ss_pred             EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEE-EEEecCccchhHHHHHHHHHHHHHHhcCCeEEE
Confidence            479999999999999999999999999999999999888898844 4432211        133466677788898876

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.10  E-value=4.2e-11  Score=94.16  Aligned_cols=72  Identities=15%  Similarity=0.242  Sum_probs=55.2

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCC----CCCCCCCccccceeeEEEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP----VEGSVLSPNVADFAMLWSGYR  163 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~----~~~~~f~~~a~~f~m~~~~~~  163 (166)
                      .++|+|+|+||||||++||++|+++|+||.+++++++.+++++ .+.|..+.    ....++.+.++++.|.|.+.+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~-~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~   81 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTL-LMLISGSPSNITRVETTLPLLGQQHDLITMMKR   81 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEE-EEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence            4789999999999999999999999999999999997777877 44443321    112234445567789998754

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=99.08  E-value=1.1e-10  Score=98.90  Aligned_cols=72  Identities=21%  Similarity=0.246  Sum_probs=58.9

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CC-eEEEE-EEEcCC--CCCCCCCCccccceeeEEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DG-YSLDV-FVVDGW--PVEGSVLSPNVADFAMLWSGY  162 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg-~~ldv-F~V~~~--~~~~~~f~~~a~~f~m~~~~~  162 (166)
                      .+.|+++|+|||||+++||++|+++|+||.++++|++. .| |+|++ |.....  ...+.+|++.+++|.|+|++.
T Consensus         7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~   83 (287)
T 3nrb_A            7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYNAEWWFR   83 (287)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHHHHGGGTCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHHHHHHcCCeeEee
Confidence            57899999999999999999999999999999999765 45 77777 665331  223455777899999999987

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=99.03  E-value=9.2e-11  Score=99.53  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=58.8

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CC-eEEEE-EEEc--C--C--CCCCCCCCccccceeeEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DG-YSLDV-FVVD--G--W--PVEGSVLSPNVADFAMLWSG  161 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg-~~ldv-F~V~--~--~--~~~~~~f~~~a~~f~m~~~~  161 (166)
                      .+.|+++|+|||||+++||++|+++|+||.+++++++. .| |++++ |...  +  .  ...+.+|++.+++|.|+|++
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l   89 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFRMQWAI   89 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEEEE
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcCcEEEe
Confidence            47899999999999999999999999999999999765 34 77777 7765  2  1  11245577788999999998


Q ss_pred             E
Q 037628          162 Y  162 (166)
Q Consensus       162 ~  162 (166)
                      .
T Consensus        90 ~   90 (292)
T 3lou_A           90 H   90 (292)
T ss_dssp             E
T ss_pred             e
Confidence            6

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=99.02  E-value=1.6e-10  Score=97.87  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=59.0

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CC-eEEEE-EEEcCCC----CCCCCCCccccceeeEEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DG-YSLDV-FVVDGWP----VEGSVLSPNVADFAMLWSGY  162 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg-~~ldv-F~V~~~~----~~~~~f~~~a~~f~m~~~~~  162 (166)
                      .+.|++.|+|||||+++||++|+++|+||.++++|++. .| |++++ |.+.+..    ..+.+|++.+++|.|+|++.
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~   84 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMR   84 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCEEEee
Confidence            37899999999999999999999999999999999765 45 77777 7765421    12445777889999999986

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=99.01  E-value=1.6e-10  Score=98.53  Aligned_cols=73  Identities=19%  Similarity=0.265  Sum_probs=59.2

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CC-eEEEE-EEEcCC----CCCCCCCCccccceeeEEEEE
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DG-YSLDV-FVVDGW----PVEGSVLSPNVADFAMLWSGY  162 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg-~~ldv-F~V~~~----~~~~~~f~~~a~~f~m~~~~~  162 (166)
                      ..+.|+++|+|||||+++||++|+++|+||.+++++++. .| |+|++ |...+.    ...+.+|++.+++|.|+|++.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~~~l~  100 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRIT  100 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCeeeec
Confidence            357899999999999999999999999999999999864 45 77777 765432    112345777889999999986

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=98.99  E-value=2.1e-10  Score=97.01  Aligned_cols=72  Identities=14%  Similarity=0.105  Sum_probs=58.2

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CC-eEEEE-EEEcCC---CCCCCCCCccccceeeEEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DG-YSLDV-FVVDGW---PVEGSVLSPNVADFAMLWSGY  162 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg-~~ldv-F~V~~~---~~~~~~f~~~a~~f~m~~~~~  162 (166)
                      .+.|++.|+|||||+++||++|+++|+||.+++++++. .| |++++ |...+.   ...+.+|++.++++.|+|++.
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~la~~l~m~~~l~   85 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAERSEAFGMAFELT   85 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHHHHGGGTCEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEee
Confidence            47899999999999999999999999999999999765 34 77777 665331   112345677889999999986

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.98  E-value=2e-10  Score=91.15  Aligned_cols=75  Identities=15%  Similarity=0.042  Sum_probs=58.7

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-----CC-eEEEE-EEEcCCC--CCCCCCCccccceeeEE
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-----DG-YSLDV-FVVDGWP--VEGSVLSPNVADFAMLW  159 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-----dg-~~ldv-F~V~~~~--~~~~~f~~~a~~f~m~~  159 (166)
                      ...+.|+|.|+|||||+++||++|+++|+||.++++++..     .+ |+++. |.+.+..  ....+|.+.++++.|+|
T Consensus        91 ~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~a~~l~~di  170 (195)
T 2nyi_A           91 TREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSRVEEEFGVDI  170 (195)
T ss_dssp             EEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHTCEE
T ss_pred             CcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCccHHHHHHHHHHHHHcCeEE
Confidence            3468999999999999999999999999999999999875     23 66655 6654211  12345666788999999


Q ss_pred             EEEE
Q 037628          160 SGYR  163 (166)
Q Consensus       160 ~~~~  163 (166)
                      ++..
T Consensus       171 ~~~~  174 (195)
T 2nyi_A          171 DLEE  174 (195)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9865

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.92  E-value=5.6e-10  Score=96.34  Aligned_cols=73  Identities=16%  Similarity=0.161  Sum_probs=60.0

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcCC----CCCCCCCCccccceeeEEEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDGW----PVEGSVLSPNVADFAMLWSGYR  163 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~~----~~~~~~f~~~a~~f~m~~~~~~  163 (166)
                      ...|+++|+|||||+++||++|+++|+||.+++++...+-|++++ |.+.+.    ...+.+|++.++++.|+|++.+
T Consensus        12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   89 (415)
T 3p96_A           12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIER   89 (415)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEEE
Confidence            478999999999999999999999999999999987554488877 776532    1224557778899999999875

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.84  E-value=3.3e-09  Score=73.39  Aligned_cols=72  Identities=13%  Similarity=0.095  Sum_probs=54.6

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCe-EEEE-EEEcCCCC---CCCCCCccccceeeEEEEEE
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGY-SLDV-FVVDGWPV---EGSVLSPNVADFAMLWSGYR  163 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~-~ldv-F~V~~~~~---~~~~f~~~a~~f~m~~~~~~  163 (166)
                      .+.|+|.|+||||++++|+++|+++|+||.+.++++.. |. .+.+ +.+.+...   ....+.+.++++.|+|++..
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~-~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~~~~~~~~   81 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD-EYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQS   81 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET-TEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc-CEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcCCEEEEee
Confidence            47899999999999999999999999999999998765 64 4444 55544211   12335556778889999864

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.74  E-value=8.9e-09  Score=80.77  Aligned_cols=75  Identities=11%  Similarity=0.050  Sum_probs=57.8

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-------CC-eEEEE-EEEcCCC---CCCCCCCcccccee
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-------DG-YSLDV-FVVDGWP---VEGSVLSPNVADFA  156 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-------dg-~~ldv-F~V~~~~---~~~~~f~~~a~~f~  156 (166)
                      ...+.|++.|+||||++++|+++|+++|+||.++++++..       .+ |+++. |.+.+..   ..+.+|.+.+++++
T Consensus        91 ~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  170 (192)
T 1u8s_A           91 AYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALD  170 (192)
T ss_dssp             SEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence            3468999999999999999999999999999999999864       23 55554 6553221   12345667788999


Q ss_pred             eEEEEEE
Q 037628          157 MLWSGYR  163 (166)
Q Consensus       157 m~~~~~~  163 (166)
                      |+|++..
T Consensus       171 ~~~~~~~  177 (192)
T 1u8s_A          171 VQGSLNF  177 (192)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEEE
Confidence            9999875

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.01  E-value=2.4e-05  Score=52.88  Aligned_cols=48  Identities=17%  Similarity=0.212  Sum_probs=39.2

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEc
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD  139 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~  139 (166)
                      .+.|.|.++|+||++++|+++|++.|+||.+..+.+.. +.+...|.+.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~-~~~~~~i~v~   52 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD-GIFTCNLMIF   52 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS-SEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC-CEEEEEEEEE
Confidence            46789999999999999999999999999999997644 4444445554

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.51  E-value=0.00026  Score=55.31  Aligned_cols=49  Identities=24%  Similarity=0.214  Sum_probs=42.9

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-CeEEEEEEEcC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVDG  140 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g~~ldvF~V~~  140 (166)
                      +.|.+.+.|+||+|++|+++|+..|.||.+..+..+.+ |...-+|.+++
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~   53 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG   53 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec
Confidence            78999999999999999999999999999999987775 66655677763

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.28  E-value=0.00052  Score=53.68  Aligned_cols=49  Identities=29%  Similarity=0.363  Sum_probs=42.2

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-CeEEEEEEEcC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVDG  140 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g~~ldvF~V~~  140 (166)
                      +.|.+.+.|+||++++|+++|+..|.||.+..+..+.+ |..--++.|.+
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~   54 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG   54 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec
Confidence            78999999999999999999999999999999987775 65555577753

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.01  E-value=0.0013  Score=53.86  Aligned_cols=50  Identities=24%  Similarity=0.357  Sum_probs=39.8

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC----CCeEEEEEEEcCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT----DGYSLDVFVVDGW  141 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~----dg~~ldvF~V~~~  141 (166)
                      ..|.|.+.||||+++.|+++|++++.||...++.+..    +|.+.-.+.+++.
T Consensus         5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~   58 (223)
T 1y7p_A            5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG   58 (223)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC
Confidence            6899999999999999999999999999999998876    7766544887654

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.96  E-value=0.0027  Score=50.97  Aligned_cols=50  Identities=28%  Similarity=0.397  Sum_probs=42.4

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-CeEEEEEEEcC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVDG  140 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g~~ldvF~V~~  140 (166)
                      -+.|.|...|+||.|++|+++|+..|+||.+-.+..+.+ |..--+++|++
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g   79 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG   79 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC
Confidence            378999999999999999999999999999999887666 55444577764

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.34  E-value=0.0058  Score=45.29  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=33.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCe
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGY  131 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~  131 (166)
                      .|.|.|.||+||++.|+.+|+..++||..+.+.+  +|.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~--~g~   38 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP--IGR   38 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET--TTE
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec--CCE
Confidence            5889999999999999999999999999999954  375

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=96.31  E-value=0.01  Score=43.75  Aligned_cols=39  Identities=13%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD  129 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d  129 (166)
                      .++|++..+|+||.++++++.|++.|+||..-.+..+.+
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~   44 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD   44 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence            478999999999999999999999999999877765555

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=96.28  E-value=0.016  Score=42.59  Aligned_cols=47  Identities=21%  Similarity=0.192  Sum_probs=35.9

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEc
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD  139 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~  139 (166)
                      ..+.+-.+|+||.+++++.+|+++|+||.....+. .++...-+|.++
T Consensus        73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~  119 (144)
T 2f06_A           73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPS  119 (144)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEES
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeC
Confidence            35677899999999999999999999998777763 344444445554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.36  E-value=0.057  Score=47.11  Aligned_cols=51  Identities=14%  Similarity=0.249  Sum_probs=44.9

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      +...|++.-+|+||.+++|+.+|+++|+||...+..+ ..+.++-++.++..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g~~A~~vidvD~~  380 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SAQMGYVVIDIEAD  380 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CSSEEEEEEEEECC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CCCEEEEEEEcCCC
Confidence            4678999999999999999999999999999988876 77788888888764

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=94.90  E-value=0.097  Score=46.88  Aligned_cols=52  Identities=21%  Similarity=0.289  Sum_probs=44.8

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEEcCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVVDGW  141 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V~~~  141 (166)
                      .++.|.+.-+|+||.+++|++.|.++|+||-..++.... +|..+-++.+++.
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~  505 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD  505 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC
Confidence            468899999999999999999999999999999997654 4477777887764

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=92.81  E-value=0.36  Score=42.45  Aligned_cols=49  Identities=18%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEc
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD  139 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~  139 (166)
                      +.+.|++.-+|.||++++|+.+|+++|+||..-.- .+.+.+..-+..++
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~-~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFL-QTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEE-EECSSCEEEEEEEC
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhc-cCCCceEEEEEEec
Confidence            57899999999999999999999999999996554 44555555555554

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=90.25  E-value=0.63  Score=35.11  Aligned_cols=52  Identities=15%  Similarity=0.140  Sum_probs=38.0

Q ss_pred             CCeEEEEEE-ecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628           89 VPIHEVVFS-TVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG  140 (166)
Q Consensus        89 ~~~~eI~I~-~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~  140 (166)
                      .+...|+|. .+|+||.+++|.+.|+.+|+||.---+-.+.+|..--.|.|..
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~   75 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR   75 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec
Confidence            456788888 6999999999999999999999876554444563334488764

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=88.63  E-value=1.4  Score=37.30  Aligned_cols=47  Identities=13%  Similarity=0.154  Sum_probs=39.5

Q ss_pred             CCeEEEEEEecC-CCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE
Q 037628           89 VPIHEVVFSTVD-KPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV  135 (166)
Q Consensus        89 ~~~~eI~I~~~D-rpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv  135 (166)
                      ...+.+++..++ ++|+++.|+.+|+++|+||.+....+....+.+..
T Consensus        99 ~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~  146 (415)
T 3p96_A           99 PSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLEL  146 (415)
T ss_dssp             CCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEE
T ss_pred             CCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEE
Confidence            456889999999 99999999999999999999998887545555544

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=83.97  E-value=1.1  Score=39.50  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEee
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFS  126 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~t  126 (166)
                      ..+=|-+.+.|+||.+++|+++|+++|++|.+..+..
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~  394 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKE  394 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecc
Confidence            3456778899999999999999999999999887753

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=83.02  E-value=1.3  Score=33.71  Aligned_cols=36  Identities=22%  Similarity=0.207  Sum_probs=30.2

Q ss_pred             CCeEEEEE-EecCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628           89 VPIHEVVF-STVDKPKLLSQLSALLSDIGLNIREAHV  124 (166)
Q Consensus        89 ~~~~eI~I-~~~DrpGLfa~It~~La~~glNI~~A~i  124 (166)
                      .+...|+| ..+|+||.+++|...|+++|+||----+
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~   49 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ   49 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEc
Confidence            35677777 4699999999999999999999986544

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=80.42  E-value=1.5  Score=34.67  Aligned_cols=55  Identities=16%  Similarity=0.081  Sum_probs=38.3

Q ss_pred             CCCCeEEEEEE-ecCCCchHHHHHHHHHHCCCcEEEEEEeec--CCCeEEEEEEEcCC
Q 037628           87 ELVPIHEVVFS-TVDKPKLLSQLSALLSDIGLNIREAHVFST--TDGYSLDVFVVDGW  141 (166)
Q Consensus        87 ~~~~~~eI~I~-~~DrpGLfa~It~~La~~glNI~~A~i~tt--~dg~~ldvF~V~~~  141 (166)
                      ...+...|+|. .+|+||..++|-+.|++.|+||----+-..  .++..--+|.+...
T Consensus        31 ~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~   88 (200)
T 4go7_X           31 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD   88 (200)
T ss_dssp             EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG
T ss_pred             ccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh
Confidence            34456777775 699999999999999999999975433222  13344445888653

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=80.23  E-value=1.6  Score=32.81  Aligned_cols=52  Identities=12%  Similarity=0.120  Sum_probs=36.1

Q ss_pred             CCeEEEEEEe-cCCCchHHHHHHHHHHCCCcEEEEEEeecC--CCeEEEEEEEcC
Q 037628           89 VPIHEVVFST-VDKPKLLSQLSALLSDIGLNIREAHVFSTT--DGYSLDVFVVDG  140 (166)
Q Consensus        89 ~~~~eI~I~~-~DrpGLfa~It~~La~~glNI~~A~i~tt~--dg~~ldvF~V~~  140 (166)
                      .+...|++.. +|+||..+++.+.|++.|+||.--.+-...  .|..--.|.|..
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~   68 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK   68 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence            3456676654 899999999999999999999864442221  332223388754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	2e-04
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	0.001

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 92  HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVDGWP 142
             ++   VD+P  L ++  LL   G+NI+ A +    +   +  +  +D   
Sbjct: 4   INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDV 55

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 10/54 (18%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 92  HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVDGWPVE 144
             ++    ++P +L+ L+ + ++ G+NI   ++ ++   GY +     D    E
Sbjct: 12  RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAE 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	99.25
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	99.1
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.97
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	98.11
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.89
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.85
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.81
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.76
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.39
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.15
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.14
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	92.33
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	91.67
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	86.91
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.96
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	80.13

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.25  E-value=2.8e-12  Score=87.72  Aligned_cols=72  Identities=11%  Similarity=0.090  Sum_probs=55.9

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcCCCC---CCCCCCccccceeeEEEEEE
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDGWPV---EGSVLSPNVADFAMLWSGYR  163 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~~~~---~~~~f~~~a~~f~m~~~~~~  163 (166)
                      +.|++.|+||||++++||++|+++|+||.+.++++..+-|++.. +.+.....   ...++++.++++.|+|++.+
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~la~~l~l~i~i~~   78 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQS   78 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHHHHHcCcEEEEEE
Confidence            47899999999999999999999999999999987654455554 44432211   13456778899999999875

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=99.10  E-value=3.3e-11  Score=84.14  Aligned_cols=73  Identities=11%  Similarity=0.068  Sum_probs=56.7

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-------CC-eEEEE-EEEcCC---CCCCCCCCccccceee
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-------DG-YSLDV-FVVDGW---PVEGSVLSPNVADFAM  157 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-------dg-~~ldv-F~V~~~---~~~~~~f~~~a~~f~m  157 (166)
                      ...+|+|.|+|||||+++||++|+++|+||.+.+..+..       .+ |+++. |.+...   ...+.+|++.+++++|
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~l~v   84 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDV   84 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHTC
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHHcee
Confidence            357899999999999999999999999999998876522       11 55655 666442   1124568888999999


Q ss_pred             EEEEE
Q 037628          158 LWSGY  162 (166)
Q Consensus       158 ~~~~~  162 (166)
                      +|++.
T Consensus        85 ~~si~   89 (93)
T d1u8sa2          85 QGSLN   89 (93)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99986

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.97  E-value=1.8e-10  Score=79.21  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=56.2

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC----CCCCCCCCccccceeeEEEEEE
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW----PVEGSVLSPNVADFAMLWSGYR  163 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~----~~~~~~f~~~a~~f~m~~~~~~  163 (166)
                      ..+.|+++|+||||+++++|++|+++|+||.++++.+.. |.+.-.+.|...    ...+..+++.+++++|+|.+.|
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~L~~l~~~l~l~i~~~~   80 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFG-KEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKR   80 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET-TEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEEC-CeeEEEEEEEcCcccHHHHHHHHHHHHHHhCCEEEEEE
Confidence            357899999999999999999999999999999997754 434334444322    1234556777888999999876

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=8.6e-06  Score=54.46  Aligned_cols=52  Identities=23%  Similarity=0.358  Sum_probs=44.4

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcCC
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDGW  141 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~~  141 (166)
                      .++.+.+.-.|+||++++|+++|+++|+||...++.+...| .++-++.++..
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~   54 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD   54 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCC
Confidence            36889999999999999999999999999999998766555 77777777654

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.89  E-value=3e-06  Score=56.74  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=32.4

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCe
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGY  131 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~  131 (166)
                      .-|.|.|.||||+++.|+++++++|.||...++.+..+|.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~   41 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGE   41 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSST
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCe
Confidence            3578999999999999999999999999999998877773

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=3.4e-05  Score=51.92  Aligned_cols=50  Identities=16%  Similarity=0.289  Sum_probs=41.4

Q ss_pred             CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEc
Q 037628           90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVD  139 (166)
Q Consensus        90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~  139 (166)
                      +.+.|++.-.|+||++++|+++|+++|+||.+...-+..++ +++-.+.++
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D   60 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEAD   60 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECC
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECC
Confidence            45899999999999999999999999999999888776553 665445543

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.81  E-value=4.9e-05  Score=49.91  Aligned_cols=48  Identities=21%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      .|.|..+|+||-|++++++|++.|+||.....|.+. ++.+-+|.++++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~-~~~~~vl~vdd~   48 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANN-NVANVVIRPSNM   48 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEET-TEEEEEEEESCH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCC-CcEEEEEEECCH
Confidence            367888999999999999999999999999999865 677777888765

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.76  E-value=5.2e-05  Score=49.89  Aligned_cols=49  Identities=14%  Similarity=0.133  Sum_probs=41.1

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      .+|.|...||||.+++++++|+..|+||.+-.+..+.+--.++ +.|+++
T Consensus         4 ~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~R-iiv~~~   52 (70)
T d2f06a2           4 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILR-GIVSDP   52 (70)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEE-EEESCH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEE-EEECCh
Confidence            5799999999999999999999999999999998766554444 567654

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=0.00031  Score=47.14  Aligned_cols=50  Identities=26%  Similarity=0.343  Sum_probs=41.4

Q ss_pred             eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcC
Q 037628           91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDG  140 (166)
Q Consensus        91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~  140 (166)
                      -+.|.+...|+||+++++|++|+..|.||.+-.+-.|.+. +.--++++.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g   53 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG   53 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc
Confidence            3789999999999999999999999999999998777765 4333466654

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.15  E-value=0.00045  Score=46.19  Aligned_cols=49  Identities=29%  Similarity=0.359  Sum_probs=41.2

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDG  140 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~  140 (166)
                      +.|.+...|+||++++||+.|+..|.||.+-.+-.+.+. ++--++++.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~   52 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG   52 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC
Confidence            678999999999999999999999999999999766654 5544477764

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00071  Score=45.07  Aligned_cols=49  Identities=24%  Similarity=0.211  Sum_probs=40.2

Q ss_pred             EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcC
Q 037628           92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDG  140 (166)
Q Consensus        92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~  140 (166)
                      +.|.+...|+||+++++|++|+..|+||.+-.+-.+.+. +.--++++.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~   51 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG   51 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC
Confidence            578899999999999999999999999999998766665 4433366654

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.33  E-value=0.33  Score=31.41  Aligned_cols=37  Identities=16%  Similarity=0.168  Sum_probs=30.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC
Q 037628           93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD  129 (166)
Q Consensus        93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d  129 (166)
                      -+++...|+||-++++-+.++.+|+|+..-.-.....
T Consensus         4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~   40 (80)
T d2qmwa2           4 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKT   40 (80)
T ss_dssp             EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSS
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCC
Confidence            3555667999999999999999999999777665443

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.67  E-value=0.14  Score=34.62  Aligned_cols=41  Identities=12%  Similarity=0.156  Sum_probs=34.4

Q ss_pred             CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC
Q 037628           89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD  129 (166)
Q Consensus        89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d  129 (166)
                      .+-+.|.+.++|+||-|+.+-..|+.+|+|+..-.-.....
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~   54 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRL   54 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSS
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCC
Confidence            34588999999999999999999999999998766654443

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.91  E-value=0.4  Score=31.71  Aligned_cols=34  Identities=6%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             CeEEEEEEe---cCCCchHHHHHHHHHHCCCcEEEEE
Q 037628           90 PIHEVVFST---VDKPKLLSQLSALLSDIGLNIREAH  123 (166)
Q Consensus        90 ~~~eI~I~~---~DrpGLfa~It~~La~~glNI~~A~  123 (166)
                      +...|++..   +++||..+++.+.|+++|+||.--.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            467888875   5999999999999999999998654

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.96  E-value=1  Score=29.93  Aligned_cols=50  Identities=12%  Similarity=-0.015  Sum_probs=36.6

Q ss_pred             CCeEEEEEEe---cCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628           89 VPIHEVVFST---VDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW  141 (166)
Q Consensus        89 ~~~~eI~I~~---~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~  141 (166)
                      .+...|++..   +++||+.+++.++|+..|+||.--.+-+....   -.|.|...
T Consensus        13 ~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~---Isf~V~~~   65 (100)
T d2hmfa3          13 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETN---ISLVVSEE   65 (100)
T ss_dssp             EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCC---EEEEECST
T ss_pred             CCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcce---EEEEEeHH
Confidence            3467888876   79999999999999999999996555332211   23777664

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=80.13  E-value=1.1  Score=27.78  Aligned_cols=31  Identities=13%  Similarity=0.160  Sum_probs=25.7

Q ss_pred             EEEEe---cCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628           94 VVFST---VDKPKLLSQLSALLSDIGLNIREAHV  124 (166)
Q Consensus        94 I~I~~---~DrpGLfa~It~~La~~glNI~~A~i  124 (166)
                      |.+..   +++||+.+++.+.|+++|+||.--.+
T Consensus         4 vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq   37 (67)
T d2hmfa2           4 ISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQ   37 (67)
T ss_dssp             EEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred             EEEEeCCCCCCccHHHHHHHHHHHcCCChHHeee
Confidence            44543   68999999999999999999986554