Citrus Sinensis ID: 037646

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
MDDAYEGSLSKSVAPAAPPLPGPATSYHQKGLVMNGLPLRGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESVLDEDHKQKERIRKLKERKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLVEKMLRTKRIGGANFFSEELASPS
cccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHcccccccEEEEcccccEEEcHHHHHHcccHHHHHHccccccccccccEEEccccHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEccccEccHHHHHHHcccHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHEcccc
mddayegslsksvapaapplpgpatsyhqkglvmnglplrgyscVSTAAKDLWERLFdsgykadvtiytdyNGIIYAHANVLGMASPVMKgmlnqskghgrwrslsihgvpqDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESVLDEDHKQKERIRKLKERKIYLQLYEAMEALVHICRDgcktigphdkdfkedqapcnytacKGLELLVRHFAgcrlripgkcshcKRMWQLLELHsrlcddsdvcrvplcRNFKERIKKQSKKDEIKWKKLVEKMLRTKrigganffseelasps
MDDAYEGSlsksvapaapplpGPATSYHQKGLVMNGLPLRGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVesvldedhkqkerirklkeRKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGKCSHCKRMWQLLELHsrlcddsdvcrVPLCrnfkerikkqskkdeikwkKLVEKMLRtkrigganffseelasps
MDDAYEGSLSKSVapaapplpgpaTSYHQKGLVMNGLPLRGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYvlhllvlshvfvvPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESVLDEDHkqkerirklkerkiYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLVEKMLRTKRIGGANFFSEELASPS
****************************QKGLVMNGLPLRGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMM****V********************RKLKERKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIK******EIKWKKLVEKMLRTKRIGGANF*********
*******************LPGPATSYHQKGLV******************LWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESVLDE*****************LQLYEAMEALVHICRDGCKTIGPH*******QAPCNYTACKGLELLVRHFAGCRLRIPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCR********************VE**********************
***********SVAPAAPPLPGPATSYHQKGLVMNGLPLRGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESVLDEDHKQKERIRKLKERKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLVEKMLRTKRIGGANFFSEELASPS
*******SLSKSVAPAAPPLPGPATSYHQ******GLPLRGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESVLDEDHKQKERIRKLKERKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLVEKMLRTKRIGGANFFSEELAS**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDDAYEGSLSKSVAPAAPPLPGPATSYHQKGLVMNGLPLRGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESVLDEDHKQKERIRKLKERKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLVEKMLRTKRIGGANFFSEELASPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query377 2.2.26 [Sep-21-2011]
Q9FJX5372 BTB/POZ and TAZ domain-co yes no 0.936 0.948 0.649 1e-141
Q6EJ98368 BTB/POZ and TAZ domain-co no no 0.870 0.891 0.622 1e-118
Q9SYL0364 BTB/POZ and TAZ domain-co no no 0.917 0.950 0.512 5e-90
Q94BN0364 BTB/POZ and TAZ domain-co no no 0.790 0.818 0.460 9e-64
Q9FMK7365 BTB/POZ and TAZ domain-co no no 0.793 0.819 0.437 9e-64
Q9C5X91697 Histone acetyltransferase no no 0.318 0.070 0.321 1e-13
Q6YXY21668 Probable histone acetyltr no no 0.220 0.049 0.369 4e-12
Q9FWQ51706 Histone acetyltransferase no no 0.318 0.070 0.307 5e-11
P34371410 BTB and MATH domain-conta yes no 0.405 0.373 0.267 1e-09
Q94420395 Protein maternal effect l no no 0.442 0.422 0.271 1e-08
>sp|Q9FJX5|BT4_ARATH BTB/POZ and TAZ domain-containing protein 4 OS=Arabidopsis thaliana GN=BT4 PE=1 SV=1 Back     alignment and function desciption
 Score =  500 bits (1288), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/362 (64%), Positives = 286/362 (79%), Gaps = 9/362 (2%)

Query: 8   SLSKSVAPAAPPLPGPATSYHQKGLVMNGLPLRGYSCVSTAAKDLWERLFDSGYKADVTI 67
           S   S  P  PPLP  +    +K          G+S VSTA +D+W+RLF+ GYKADV I
Sbjct: 14  SADSSSVPIPPPLPSKSDGLKKK---------LGHSSVSTATRDMWDRLFNDGYKADVVI 64

Query: 68  YTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCS 127
           YTD   IIYAHAN+LG AS V+KGML Q+K HG+W ++SI GVP DAVRVFIRFLYSSC 
Sbjct: 65  YTDNGSIIYAHANILGTASTVIKGMLKQAKRHGKWHTISIRGVPHDAVRVFIRFLYSSCY 124

Query: 128 EKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLV 187
           EK +M ++++HLL+LSH +VVPQLKR CE  LEHGLL+TENVVD+FQLALLCD PRLSL+
Sbjct: 125 EKEEMNEFIMHLLLLSHAYVVPQLKRVCEWHLEHGLLTTENVVDVFQLALLCDFPRLSLI 184

Query: 188 CHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESVLDEDHKQKERIRKLKERKIYLQLY 247
            HRMI+K+F  +S +E W AM +SHP LEKE+ +SV+ E + +KER+RK  +++IY QLY
Sbjct: 185 SHRMIMKHFNELSATEAWTAMKKSHPFLEKEVRDSVIIEANTRKERMRKRNDQRIYSQLY 244

Query: 248 EAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGKCSHC 307
           EAMEALVHICRDGCKTIGPHDKDFK + A CNY ACKGLE L+RHFAGC+LR+PG C HC
Sbjct: 245 EAMEALVHICRDGCKTIGPHDKDFKPNHATCNYEACKGLESLIRHFAGCKLRVPGGCVHC 304

Query: 308 KRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLVEKMLRTKRIGGAN 367
           KRMWQLLELHSR+C  SD CRVPLCRN KE+++KQSKKDE +WK LV+ +L +K+IGG+ 
Sbjct: 305 KRMWQLLELHSRVCAGSDQCRVPLCRNLKEKMEKQSKKDESRWKLLVKNVLGSKKIGGSP 364

Query: 368 FF 369
           FF
Sbjct: 365 FF 366
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6EJ98|BT5_ARATH BTB/POZ and TAZ domain-containing protein 5 OS=Arabidopsis thaliana GN=BT5 PE=1 SV=1 Back     alignment and function description
>sp|Q9SYL0|BT3_ARATH BTB/POZ and TAZ domain-containing protein 3 OS=Arabidopsis thaliana GN=BT3 PE=1 SV=2 Back     alignment and function description
>sp|Q94BN0|BT2_ARATH BTB/POZ and TAZ domain-containing protein 2 OS=Arabidopsis thaliana GN=BT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FMK7|BT1_ARATH BTB/POZ and TAZ domain-containing protein 1 OS=Arabidopsis thaliana GN=BT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5X9|HAC1_ARATH Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6YXY2|HACL1_ORYSJ Probable histone acetyltransferase HAC-like 1 OS=Oryza sativa subsp. japonica GN=Os02g0137500 PE=3 SV=2 Back     alignment and function description
>sp|Q9FWQ5|HAC12_ARATH Histone acetyltransferase HAC12 OS=Arabidopsis thaliana GN=HAC12 PE=2 SV=2 Back     alignment and function description
>sp|P34371|BAT42_CAEEL BTB and MATH domain-containing protein 42 OS=Caenorhabditis elegans GN=bath-42 PE=1 SV=1 Back     alignment and function description
>sp|Q94420|MEL26_CAEEL Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
224074247329 hypothetical protein POPTRDRAFT_413626 [ 0.872 1.0 0.762 1e-151
359480559371 PREDICTED: BTB/POZ and TAZ domain-contai 0.907 0.921 0.719 1e-149
449448230383 PREDICTED: BTB/POZ and TAZ domain-contai 0.949 0.934 0.699 1e-147
357482619372 Speckle-type POZ protein-like B [Medicag 0.915 0.927 0.717 1e-147
217073162375 unknown [Medicago truncatula] 0.915 0.92 0.714 1e-146
388522775374 unknown [Lotus japonicus] 0.928 0.935 0.696 1e-144
356495504379 PREDICTED: BTB/POZ and TAZ domain-contai 0.952 0.947 0.683 1e-141
297794229372 hypothetical protein ARALYDRAFT_496846 [ 0.936 0.948 0.657 1e-140
15240763372 BTB and TAZ domain protein 4 [Arabidopsi 0.936 0.948 0.649 1e-139
42573822383 BTB and TAZ domain protein 4 [Arabidopsi 0.936 0.921 0.649 1e-139
>gi|224074247|ref|XP_002304319.1| hypothetical protein POPTRDRAFT_413626 [Populus trichocarpa] gi|222841751|gb|EEE79298.1| hypothetical protein POPTRDRAFT_413626 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 251/329 (76%), Positives = 290/329 (88%)

Query: 41  GYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHG 100
           GYSCV TA +DLW++LFD GY+ADVTI TD  G IYAHA+VLGMAS VMKGML Q+KG G
Sbjct: 1   GYSCVRTATRDLWDQLFDEGYRADVTISTDNGGSIYAHASVLGMASQVMKGMLKQAKGRG 60

Query: 101 RWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLE 160
           R RS+SIHGVP +AVRVFIR LYSSC EK +MEDYVLHLLVLSHVFVVP LK+ C +QLE
Sbjct: 61  RRRSISIHGVPHNAVRVFIRLLYSSCYEKEEMEDYVLHLLVLSHVFVVPALKQICIQQLE 120

Query: 161 HGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELV 220
           HG L++ENVVDIFQLALLCDAPRLSL+CHRMILKNF+ +S +EGWK M +SHP LE+EL+
Sbjct: 121 HGFLTSENVVDIFQLALLCDAPRLSLICHRMILKNFQEISITEGWKVMKKSHPSLERELL 180

Query: 221 ESVLDEDHKQKERIRKLKERKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNY 280
           ES+ DE++ Q+ERIRK  ERKIY QLYEAMEALVHICRDGC+TIGPHDKDF++DQAPCNY
Sbjct: 181 ESLDDEENMQRERIRKSNERKIYFQLYEAMEALVHICRDGCQTIGPHDKDFRDDQAPCNY 240

Query: 281 TACKGLELLVRHFAGCRLRIPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIK 340
           +ACKGLE++VRHFA C+LR+PG C HCKRMWQLLELHSRLC DS+ CRVPLCRNFKER K
Sbjct: 241 SACKGLEMIVRHFASCKLRVPGGCIHCKRMWQLLELHSRLCVDSEACRVPLCRNFKERTK 300

Query: 341 KQSKKDEIKWKKLVEKMLRTKRIGGANFF 369
           KQSKKDEI+W+ LV+ +L+TK IGG+ FF
Sbjct: 301 KQSKKDEIRWRILVKNILKTKSIGGSPFF 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480559|ref|XP_003632492.1| PREDICTED: BTB/POZ and TAZ domain-containing protein 4-like [Vitis vinifera] gi|296087324|emb|CBI33698.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448230|ref|XP_004141869.1| PREDICTED: BTB/POZ and TAZ domain-containing protein 4-like [Cucumis sativus] gi|449519577|ref|XP_004166811.1| PREDICTED: BTB/POZ and TAZ domain-containing protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357482619|ref|XP_003611596.1| Speckle-type POZ protein-like B [Medicago truncatula] gi|355512931|gb|AES94554.1| Speckle-type POZ protein-like B [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073162|gb|ACJ84940.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388522775|gb|AFK49449.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356495504|ref|XP_003516617.1| PREDICTED: BTB/POZ and TAZ domain-containing protein 4-like [Glycine max] Back     alignment and taxonomy information
>gi|297794229|ref|XP_002864999.1| hypothetical protein ARALYDRAFT_496846 [Arabidopsis lyrata subsp. lyrata] gi|297310834|gb|EFH41258.1| hypothetical protein ARALYDRAFT_496846 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240763|ref|NP_201549.1| BTB and TAZ domain protein 4 [Arabidopsis thaliana] gi|75262583|sp|Q9FJX5.1|BT4_ARATH RecName: Full=BTB/POZ and TAZ domain-containing protein 4; AltName: Full=BTB and TAZ domain protein 4 gi|17386120|gb|AAL38606.1|AF446873_1 AT5g67480/K9I9_4 [Arabidopsis thaliana] gi|9757869|dbj|BAB08456.1| unnamed protein product [Arabidopsis thaliana] gi|15529178|gb|AAK97683.1| AT5g67480/K9I9_4 [Arabidopsis thaliana] gi|36955915|gb|AAQ87007.1| BTB and TAZ domain protein 4 [Arabidopsis thaliana] gi|332010966|gb|AED98349.1| BTB and TAZ domain protein 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42573822|ref|NP_975007.1| BTB and TAZ domain protein 4 [Arabidopsis thaliana] gi|332010967|gb|AED98350.1| BTB and TAZ domain protein 4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
TAIR|locus:2120056368 BT5 "BTB and TAZ domain protei 0.880 0.902 0.567 2.4e-99
TAIR|locus:2031993364 BT3 "BTB and TAZ domain protei 0.835 0.865 0.488 3.7e-80
TAIR|locus:2161962365 BT1 "BTB and TAZ domain protei 0.793 0.819 0.418 5.3e-56
TAIR|locus:2101135364 BT2 "BTB and TAZ domain protei 0.787 0.815 0.420 6.1e-55
TAIR|locus:20156761706 HAC12 "histone acetyltransfera 0.220 0.048 0.357 3.4e-09
WB|WBGene00003209395 mel-26 [Caenorhabditis elegans 0.442 0.422 0.260 1.2e-07
UNIPROTKB|Q94420395 mel-26 "Protein maternal effec 0.442 0.422 0.260 1.2e-07
UNIPROTKB|P34371410 bath-42 "BTB and MATH domain-c 0.445 0.409 0.262 2.2e-07
TAIR|locus:2020522329 AT1G55760 "AT1G55760" [Arabido 0.458 0.525 0.25 1.5e-06
TAIR|locus:20892851670 HAC5 "histone acetyltransferas 0.217 0.049 0.348 2.7e-06
TAIR|locus:2120056 BT5 "BTB and TAZ domain protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
 Identities = 190/335 (56%), Positives = 233/335 (69%)

Query:    40 RGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGH 99
             R  S VS A +D W+R+FD  + ADV I+TD NG+IYAH+NV+GMAS V++GM+ Q K  
Sbjct:    32 RSNSFVSKATRDSWDRMFDEAHGADVLIHTDDNGLIYAHSNVIGMASDVIRGMMKQHKRK 91

Query:   100 GRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYXXXXXXXXXXXXXPQLKRECERQL 159
                +S+SI GVP  A+RVFIRFLYSSC EK DMED+             P LKR CE + 
Sbjct:    92 SHRKSISILGVPHHALRVFIRFLYSSCYEKQDMEDFAIHLLVLSHVYVVPHLKRVCESEF 151

Query:   160 EHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKEL 219
             E  LL+ ENV+D+FQLALLCDAPRL L+CHRMIL NF+ VS SEGW+AM +SHP L+KEL
Sbjct:   152 ESSLLNKENVIDVFQLALLCDAPRLGLLCHRMILNNFEEVSTSEGWQAMKESHPRLQKEL 211

Query:   220 VESVLDEDHXXXXXXXXXXXXXXYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCN 279
             + SV  E +              Y QLYEAMEA VHICRDGC+ IGP   +       C 
Sbjct:   212 LRSVAYELNSLKQRNRKQKEIQTYTQLYEAMEAFVHICRDGCREIGPTKTE--TPHMSCG 269

Query:   280 YTACKGLELLVRHFAGCRLR-IPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKER 338
             + AC GLE L++H AGC+LR IPG CS CKRMWQLLELHSR+C DS+ C+VPLC + KER
Sbjct:   270 FQACNGLEQLLKHLAGCKLRSIPGGCSRCKRMWQLLELHSRICVDSEQCKVPLCSSLKER 329

Query:   339 IKKQSKKDEIKWKKLVEKMLRTKRIGGANFFSEEL 373
             +K QS+KDE +WK LV  +L TKRIGG+ FF + +
Sbjct:   330 MKTQSRKDEKRWKLLVRNVLSTKRIGGSPFFLQAI 364
GO:0003712 "transcription cofactor activity" evidence=IEA
GO:0004402 "histone acetyltransferase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005516 "calmodulin binding" evidence=IDA
GO:0009409 "response to cold" evidence=IEP
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0042542 "response to hydrogen peroxide" evidence=IEP
GO:0010200 "response to chitin" evidence=IEP
GO:0005737 "cytoplasm" evidence=IDA
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0009954 "proximal/distal pattern formation" evidence=RCA
GO:0010227 "floral organ abscission" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
TAIR|locus:2031993 BT3 "BTB and TAZ domain protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161962 BT1 "BTB and TAZ domain protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101135 BT2 "BTB and TAZ domain protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015676 HAC12 "histone acetyltransferase of the CBP family 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00003209 mel-26 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q94420 mel-26 "Protein maternal effect lethal 26" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P34371 bath-42 "BTB and MATH domain-containing protein 42" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2020522 AT1G55760 "AT1G55760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089285 HAC5 "histone acetyltransferase of the CBP family 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FJX5BT4_ARATHNo assigned EC number0.64910.93630.9489yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.III.729.1
hypothetical protein (329 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
smart0055179 smart00551, ZnF_TAZ, TAZ zinc finger, present in p 1e-19
pfam0213574 pfam02135, zf-TAZ, TAZ zinc finger 1e-14
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-08
pfam00651101 pfam00651, BTB, BTB/POZ domain 9e-08
smart00875101 smart00875, BACK, BTB And C-terminal Kelch 3e-04
>gnl|CDD|214717 smart00551, ZnF_TAZ, TAZ zinc finger, present in p300 and CBP Back     alignment and domain information 
 Score = 82.0 bits (203), Expect = 1e-19
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 19/94 (20%)

Query: 242 IYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLR-- 299
            Y QL   +E LVH  R  CK               C Y  CK ++ L+RH   C++R  
Sbjct: 3   RYKQLQRWLELLVHARR--CKAREAK----------CQYPNCKTMKKLLRHMDSCKVRKC 50

Query: 300 IPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCR 333
             G C+ CK++WQ    HS+ C DS+ C V  C 
Sbjct: 51  KYGYCASCKQLWQ----HSKHCKDSN-CPVCKCV 79

Length = 79
>gnl|CDD|216893 pfam02135, zf-TAZ, TAZ zinc finger Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 377
KOG1778319 consensus CREB binding protein/P300 and related TA 100.0
PHA02713 557 hypothetical protein; Provisional 99.97
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.97
PHA02790 480 Kelch-like protein; Provisional 99.96
PHA03098 534 kelch-like protein; Provisional 99.96
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.95
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.86
KOG4591280 consensus Uncharacterized conserved protein, conta 99.84
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.82
smart0055179 ZnF_TAZ TAZ zinc finger, present in p300 and CBP. 99.8
KOG4682488 consensus Uncharacterized conserved protein, conta 99.7
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.67
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.6
PF0213575 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc 99.2
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.66
KOG0511516 consensus Ankyrin repeat protein [General function 98.6
KOG2838401 consensus Uncharacterized conserved protein, conta 98.52
KOG2838401 consensus Uncharacterized conserved protein, conta 98.4
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 98.19
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.05
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 97.9
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 97.88
KOG3473112 consensus RNA polymerase II transcription elongati 97.45
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.37
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.32
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.15
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 97.09
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.85
KOG0511516 consensus Ankyrin repeat protein [General function 96.47
KOG2714 465 consensus SETA binding protein SB1 and related pro 95.86
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 94.67
KOG1665302 consensus AFH1-interacting protein FIP2, contains 94.42
KOG2715210 consensus Uncharacterized conserved protein, conta 92.12
PF0213575 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc 85.98
smart0055179 ZnF_TAZ TAZ zinc finger, present in p300 and CBP. 83.66
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 83.08
KOG3840438 consensus Uncharaterized conserved protein, contai 80.33
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-38  Score=297.29  Aligned_cols=291  Identities=48%  Similarity=0.790  Sum_probs=249.6

Q ss_pred             cEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHHHHHHHHH
Q 037646           64 DVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLS  143 (377)
Q Consensus        64 DV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll~lA  143 (377)
                      |+..+..++..+++|+.+|+..|+.|..+....-..+....+.+.+++..++..+.+++|.+ ++..++......++.+.
T Consensus        27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~  105 (319)
T KOG1778|consen   27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS  105 (319)
T ss_pred             chhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence            44555546779999999999999999988866544445567888899999999999999999 66666667888999999


Q ss_pred             hccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCchhHhhccccCCCcHHHHHHHH
Q 037646          144 HVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESV  223 (377)
Q Consensus       144 ~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~~F~~L~~~~~~l~~evl~~~  223 (377)
                      +.|.++.++..|...+..+.++..+++.++..+..|+.+.|...+...+...|....+++.|..+....+.+++  ....
T Consensus       106 ~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~c~~~~--~~~~  183 (319)
T KOG1778|consen  106 HVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPICKLEV--LTAW  183 (319)
T ss_pred             hhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCcccccc--cccc
Confidence            99999999999999998867899999999999999999999999999999999999999999888776666655  2221


Q ss_pred             HccccchHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCcchhhHhHHHHHHhhhccCCcCCCC
Q 037646          224 LDEDHKQKERIRKLKERKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGK  303 (377)
Q Consensus       224 ~~~~~~~~~r~~~~~e~~~y~ql~~~me~L~h~~~~~c~~~~p~~~~~~~~~~~c~~~~c~~l~~l~~H~~~c~~r~~~~  303 (377)
                      .........+.+...++..|.|+.++|++    |.++|.+++|..+.+....++|+|++|.+++.+++|+..|++|  ||
T Consensus       184 ~c~~~~d~d~~~~~~~k~~h~h~~~~~~~----~~~~~~~~~~~~~~i~~~~~~C~~~~C~~~k~lirH~~~Ck~R--~g  257 (319)
T KOG1778|consen  184 HCEVCPDYDRCRACEEKPLHPHLYEAMES----CTDGCATIGPRNKSINRRDANCSYPSCNGLKRLIRHFRGCKLR--GG  257 (319)
T ss_pred             ccccCCchhhhhcccCCCCCCcchhcccc----cccccccccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhc--cC
Confidence            11133345555555566679999888877    7788999999999997667999999999999999999999999  99


Q ss_pred             ChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHcch-hHHHHHHHHHHHHHHhhhc
Q 037646          304 CSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKK-DEIKWKKLVEKMLRTKRIG  364 (377)
Q Consensus       304 c~~c~~~~~l~~~h~~~c~~~~~c~vp~c~~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  364 (377)
                      |++||+||||++|||++|++++ |+||+|+++|+++++++++ ++.+|++++++|..+++++
T Consensus       258 C~iCk~m~~L~~lha~~c~~~~-C~vP~c~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T KOG1778|consen  258 CPICKRLWQLLELHARHCDDSK-CKVPLCRNLKQKLEKQQKQADERRWKLLVRRVAGTKADG  318 (319)
T ss_pred             CchHHHHHHHHHHHHHHccccc-CCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHhhhccc
Confidence            9999999999999999999999 9999999999999999887 8899999999999887764

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
3t92_A121 Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chime 4e-07
2k8f_A90 Structural Basis For The Regulation Of P53 Function 1e-05
2ka6_A92 Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex Leng 5e-05
3io2_A114 Crystal Structure Of The Taz2 Domain Of P300 Length 1e-04
1f81_A88 Solution Structure Of The Taz2 Domain Of The Transc 6e-04
>pdb|3T92|A Chain A, Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chimera Protein Length = 121 Back     alignment and structure 
Iteration: 1

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 19/114 (16%)
Query: 244 LQLYEAMEALVHI--CRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIP 301
           L +  A+++LVH   CR+                A C+  +C+ ++ +V+H  GC+ +  
Sbjct: 11  LSIQRAIQSLVHAAQCRN----------------ANCSLPSCQKMKRVVQHTKGCKRKTN 54
Query: 302 GKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLVE 355
           G C  CK++  L   H++ C ++  C VP C N K+++++Q  +  I     +E
Sbjct: 55  GGCPICKQLIALAAYHAKHCQENK-CPVPFCLNIKQKLRQQQLEASIDLSAYIE 107
>pdb|2K8F|A Chain A, Structural Basis For The Regulation Of P53 Function By P300 Length = 90 Back     alignment and structure
>pdb|2KA6|A Chain A, Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex Length = 92 Back     alignment and structure
>pdb|3IO2|A Chain A, Crystal Structure Of The Taz2 Domain Of P300 Length = 114 Back     alignment and structure
>pdb|1F81|A Chain A, Solution Structure Of The Taz2 Domain Of The Transcriptional Adaptor Protein Cbp Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
3p57_P112 Histone acetyltransferase P300; protein-DNA comple 8e-29
3t92_A121 Histone acetyltransferase P300 TAZ2-ccaat/enhance 2e-28
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 4e-23
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-22
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 8e-16
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 3e-12
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 6e-10
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 9e-10
1l3e_B101 P300 protein; protein-protein complex, transcripti 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 4e-04
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 2ka6_A 2kje_A 3io2_A 1f81_A 2k8f_A Length = 112 Back     alignment and structure
 Score =  107 bits (268), Expect = 8e-29
 Identities = 27/114 (23%), Positives = 60/114 (52%), Gaps = 15/114 (13%)

Query: 243 YLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPG 302
            L +   +++LVH C+  C+             A C+  +C+ ++ +V+H  GC+ +  G
Sbjct: 9   RLSIQRCIQSLVHACQ--CRN------------ANCSLPSCQKMKRVVQHTKGCKRKTNG 54

Query: 303 KCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLVEK 356
            C  CK++  L   H++ C ++  C VP C N K+++++Q  +  ++  +++ +
Sbjct: 55  GCPICKQLIALCCYHAKHCQENK-CPVPFCLNIKQKLRQQQLQHRLQQAQMLRR 107
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A Length = 121 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A Length = 101 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.97
3t92_A121 Histone acetyltransferase P300 TAZ2-ccaat/enhance 99.96
3p57_P112 Histone acetyltransferase P300; protein-DNA comple 99.95
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.95
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.94
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.93
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.92
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.92
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.92
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.92
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.91
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.91
2vpk_A116 Myoneurin; transcription regulation, transcription 99.91
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.91
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.9
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.9
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.9
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.89
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.87
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.87
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.48
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.28
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.15
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.06
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 99.0
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.66
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.61
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.6
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.28
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.25
1l3e_B101 P300 protein; protein-protein complex, transcripti 98.24
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.23
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.6
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 95.07
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 93.94
1l3e_B101 P300 protein; protein-protein complex, transcripti 93.91
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 93.85
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 93.35
3t92_A121 Histone acetyltransferase P300 TAZ2-ccaat/enhance 86.98
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 85.05
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 82.33
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=100.00  E-value=1.4e-34  Score=269.51  Aligned_cols=196  Identities=17%  Similarity=0.236  Sum_probs=165.7

Q ss_pred             CCCCcccHHHHHHHHHHHHhcCCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCC--CCCcceEEecCCCHHHHH
Q 037646           39 LRGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKG--HGRWRSLSIHGVPQDAVR  116 (377)
Q Consensus        39 ~~~~~~~~~~l~~~l~~l~~~~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~--e~~~~~I~i~~v~~~af~  116 (377)
                      ......|+..+.+.++++++++.+|||+|.+ +|+.|+|||.||+++|+||++||.+++.  |+....|.++++++++|+
T Consensus         8 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~   86 (256)
T 3hve_A            8 AVSDPQHAARLLRALSSFREESRFCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMR   86 (256)
T ss_dssp             --CCTTTHHHHHHHHHTCCC--CCCCEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHH
Confidence            3456679999999999999999999999999 8999999999999999999999999876  667789999999999999


Q ss_pred             HHHHHhhCCCccCCChhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhH
Q 037646          117 VFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNF  196 (377)
Q Consensus       117 ~lL~flYtg~i~~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f  196 (377)
                      .+|+|+|||.+.++.  +++.+++.+|++|+++.|+..|+++|.. .++++||+.++.+|..|+++.|.+.|.+||.+||
T Consensus        87 ~ll~~~Yt~~~~i~~--~~v~~ll~~A~~l~i~~l~~~c~~~L~~-~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f  163 (256)
T 3hve_A           87 EILDYIFSGQIRLNE--DTIQDVVQAADLLLLTDLKTLCCEFLEG-CIAAENCIGIRDFALHYCLHHVHYLATEYLETHF  163 (256)
T ss_dssp             HHHHHHHHSCCCCC---CCHHHHHHHHHHHTCHHHHHHHHHHHHH-TCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCCcccH--hHHHHHHHHHHHHChHHHHHHHHHHHHh-hCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            999999999999998  9999999999999999999999999999 8999999999999999999999999999999999


Q ss_pred             HHHhCchhHhhcccc-----------CCCcHHHHHHHHHcc-ccchHHHHHHHH
Q 037646          197 KVVSDSEGWKAMMQS-----------HPVLEKELVESVLDE-DHKQKERIRKLK  238 (377)
Q Consensus       197 ~~v~~~~~F~~L~~~-----------~~~l~~evl~~~~~~-~~~~~~r~~~~~  238 (377)
                      .++..+++|..|+.+           +...|.+||+++++| .++..+|.+++.
T Consensus       164 ~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R~~~~~  217 (256)
T 3hve_A          164 RDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMK  217 (256)
T ss_dssp             HHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCSTTTHH
T ss_pred             HHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            999999999999865           244578899999999 666555655443
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A Back     alignment and structure
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3io2_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 377
d1f81a_87 g.53.1.1 (A:) CREB-binding transcriptional adaptor 3e-24
d1l8ca_95 g.53.1.1 (A:) CREB-binding transcriptional adaptor 3e-17
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 5e-08
>d1f81a_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Length = 87 Back     information, alignment and structure

class: Small proteins
fold: TAZ domain
superfamily: TAZ domain
family: TAZ domain
domain: CREB-binding transcriptional adaptor protein CBP (p300)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.0 bits (231), Expect = 3e-24
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 17/101 (16%)

Query: 238 KERKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCR 297
           + R++ +Q    +++LVH C+  C+             A C+  +C+ ++ +V+H  GC+
Sbjct: 4   ESRRLSIQ--RCIQSLVHACQ--CRN------------ANCSLPSCQKMKRVVQHTKGCK 47

Query: 298 LRIPGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKER 338
            +  G C  CK++  L   H++ C ++  C VP C N K +
Sbjct: 48  RKTNGGCPVCKQLIALCCYHAKHCQENK-CPVPFCLNIKHK 87
>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.92
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.92
d1f81a_87 CREB-binding transcriptional adaptor protein CBP ( 99.88
d1l8ca_95 CREB-binding transcriptional adaptor protein CBP ( 99.64
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.02
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.98
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.69
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.65
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 96.39
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 96.28
d1t1da_100 Shaker potassium channel {California sea hare (Apl 95.96
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 87.73
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 83.57
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-25  Score=181.11  Aligned_cols=117  Identities=12%  Similarity=0.169  Sum_probs=111.4

Q ss_pred             CcccHHHHHHHHHHHHhcCCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHH
Q 037646           42 YSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRF  121 (377)
Q Consensus        42 ~~~~~~~l~~~l~~l~~~~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~f  121 (377)
                      ..+|++.+...|+.+++++.+|||+|.+ +|++|+|||.||+++|+||++||.+.+.++....+.++++++++|+.+|+|
T Consensus         5 ~~~h~~~ll~~l~~l~~~~~~~Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~   83 (122)
T d1r29a_           5 FTRHASDVLLNLNRLRSRDILTDVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDF   83 (122)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCeEEEEEE-CCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhh
Confidence            4579999999999999999999999999 889999999999999999999999999888887788889999999999999


Q ss_pred             hhCCCccCCChhhHHHHHHHHHhccCchhHHHHHHHHHhh
Q 037646          122 LYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEH  161 (377)
Q Consensus       122 lYtg~i~~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~  161 (377)
                      +|||++.++.  +++.+++.+|++|+++.|++.|++||..
T Consensus        84 ~Ytg~~~i~~--~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          84 MYTSRLNLRE--GNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHSCCCCCT--TTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hcCCeecCch--hhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            9999999988  9999999999999999999999999975
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f81a_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure