Citrus Sinensis ID: 037649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MPATANRILSGLPSDVIEEYLGRQRMAFRWWPRLFGWEWRLLCSFQGLVFAVSIFNYMLTFVTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccEEEEEcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHEEEHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHcccEEEEcccEEEEEEEEEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHccccHHHHHEEEEHHHHHHHHcHHHHHHHHHEcccc
Coil and Loop (DISEMBL)
mpatanrilsglpsdVIEEYLGRQRmafrwwprlfGWEWRLLCSFQGLVFAVSIFNYMLTFVTLILEIWFNqglapisgllpnptilldsvsvryfhpslilqhlhftdsKLLILTWWWFINFIMNYLNWDINVMLGLSAAAsnelgaahpkaaKFSVLVVNANSIFISVVFSAVVLIFRAdlskpfasdsEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMglpmgcllgfktslds
Flexible Loop (DISEMBL)
mpatanrilsglpsdVIEEYLGRQRMAFRWWPRLFGWEWRLLCSFQGLVFAVSIFNYMLTFVTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS
Low Complexity Region (SEG)
MPATANRILSGLPSDVIEEYLGRQRMAFRWWPRLFGWEWRLLCSFQGLVFAVSIFNYMLTFVTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANsifisvvfsavvlifRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS
Disordered region (IsUnstruct)
**********GLPSDVIEEYLGRQRMAFRWWPRLFGWEWRLLCSFQGLVFAVSIFNYMLTFVTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK*****
Disordered Region (DISOPRED)
MPATANRILSGLPSDVIEEYLGRQRMAFRWWPRLFGWEWRLLCSFQGLVFAVSIFNYMLTFVTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS
Disordered Region (DISEMBL)
MPATANRILSGLPSDVIEEYLGRQRMAFRWWPRLFGWEWRLLCSFQGLVFAVSIFNYMLTFVTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS
Disordered Region (DISPRO)
MPATANRILSGLPSDVIEEYLGRQRMAFRWWPRLFGWEWRLLCSFQGLVFAVSIFNYMLTFVTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPATANRILSGLPSDVIEEYLGRQRMAFRWWPRLFGWEWRLLCSFQGLVFAVSIFNYMLTFVTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	yes	no	0.642	0.325	0.557	2e-52
Q9SIA5	476	MATE efflux family protei	no	no	0.684	0.369	0.325	9e-17
Q9SIA4	476	MATE efflux family protei	no	no	0.649	0.350	0.326	9e-16
Q8GXM8	476	MATE efflux family protei	no	no	0.669	0.361	0.316	1e-15
Q8RWF5	483	MATE efflux family protei	no	no	0.544	0.289	0.324	7e-15
Q9SIA3	476	MATE efflux family protei	no	no	0.649	0.350	0.321	2e-14
Q9LUH2	477	MATE efflux family protei	no	no	0.657	0.354	0.324	8e-13
Q9SIA1	477	MATE efflux family protei	no	no	0.750	0.404	0.271	5e-12
Q9LUH3	469	MATE efflux family protei	no	no	0.470	0.257	0.352	6e-11
Q96FL8	570	Multidrug and toxin extru	yes	no	0.463	0.208	0.333	3e-09

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/199 (55%), Positives = 133/199 (66%), Gaps = 34/199 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           V L LEIW+NQGL  ISGLL NPTI LD++S+                            
Sbjct: 285 VMLCLEIWYNQGLVIISGLLSNPTISLDAISI---------------------------- 316

Query: 122 NFIMNYLNWDINVMLGLSAA----ASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              M YLNWD+  MLGLSAA     SNELGA +P+ A  SV+VVN  ++ IS V   +VL
Sbjct: 317 --CMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVL 374

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           +FR  LSK F SD+EV+ AVS+L P LA+S+FLNGIQPILSGVAIGSGWQA+VAYVNL  
Sbjct: 375 VFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVT 434

Query: 238 YYIMGLPMGCLLGFKTSLD 256
           YY++GLP+GC+LGFKTSL 
Sbjct: 435 YYVIGLPIGCVLGFKTSLG 453

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 27/203 (13%)

Query: 55  FNYMLTFVTLI-LEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLL 113
           F Y +    +I LE W  + L   SGLLPNP +    +S+      L ++ LH+  S   
Sbjct: 253 FQYGIPSAAMICLEWWLFEILILCSGLLPNPKLETSVLSI-----CLTIETLHYVISA-- 305

Query: 114 ILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFS 173
                               V   +S   SN LGA +P+ A+ SVL      I  S  FS
Sbjct: 306 -------------------GVAAAVSTRVSNNLGAGNPQVARVSVLAGLCLWIVESAFFS 346

Query: 174 AVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYV 233
            ++   R  +   F++  EV+  V++L P L +S  L+G   +L+GVA GSGWQ I A+ 
Sbjct: 347 ILLFTCRNIIGYAFSNSKEVLDYVADLTPLLCLSFILDGFTAVLNGVARGSGWQHIGAWN 406

Query: 234 NLACYYIMGLPMGCLLGFKTSLD 256
           N   YY++G P+G  L F   L+
Sbjct: 407 NTVSYYLVGAPVGIYLAFSRELN 429

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 26/193 (13%)

Query: 64  LILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINF 123
           + LE W  + L   SGLLPNP +    +S+      L    LH+                
Sbjct: 263 VCLEWWLFELLILCSGLLPNPKLETSVLSI-----CLTTASLHYVIPG------------ 305

Query: 124 IMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADL 183
                     V   +S   SN+LGA  P+ A+ SVL      +  S  FS ++   R  +
Sbjct: 306 ---------GVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNII 356

Query: 184 SKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGL 243
              F++  EVV  V+NL P L +S  L+G   +L+GVA GSGWQ I A  N+  YY++G 
Sbjct: 357 GYAFSNSKEVVDYVANLTPLLCLSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGA 416

Query: 244 PMGCLLGFKTSLD 256
           P+G  L F   L+
Sbjct: 417 PVGVYLAFNRELN 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 27/199 (13%)

Query: 55  FNYMLTFVTLI-LEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLL 113
           F Y +    LI LE W  + L   SGLLPNP +    +S+      L +  LH+      
Sbjct: 253 FQYGVPSAGLICLEWWLFELLILCSGLLPNPKLETSVLSI-----CLTIGTLHYVIPS-- 305

Query: 114 ILTWWWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFS 173
                               V   +S   SN+LGA +P+ A+ SVL      +  S  FS
Sbjct: 306 -------------------GVAAAVSTRVSNKLGAGNPQVARVSVLAGLCLWLVESAFFS 346

Query: 174 AVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYV 233
            ++   R  +   F++  EVV  V+++ P L +S  L+G+  +L+GVA G GWQ I A +
Sbjct: 347 TLLFTCRNIIGYTFSNSKEVVDYVADISPLLCLSFILDGLTAVLNGVARGCGWQHIGALI 406

Query: 234 NLACYYIMGLPMGCLLGFK 252
           N+  YY++G P+G  L F 
Sbjct: 407 NVVAYYLVGAPVGVYLAFS 425

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 42/182 (23%)

Query: 78  SGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLG 137
           SGLLPNP +    +S+      L    LH+                          + +G
Sbjct: 280 SGLLPNPKLETSVLSI-----CLTTSSLHYV-------------------------IPMG 309

Query: 138 LSAAAS----NELGAAHPKAAKFSVLVVNANSIFI----SVVFSAVVLIFRADLSKPFAS 189
           + AA S    NELGA +P+ A+ +V       IF+    + + S ++ I R      F++
Sbjct: 310 IGAAGSIRVSNELGAGNPEVARLAVFA----GIFLWFLEATICSTLLFICRDIFGYAFSN 365

Query: 190 DSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLL 249
             EVV  V+ L P L IS  ++G   +L GVA GSGWQ I A+ N+  YY++G P+G  L
Sbjct: 366 SKEVVDYVTELSPLLCISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFL 425

Query: 250 GF 251
           GF
Sbjct: 426 GF 427

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 26/193 (13%)

Query: 64  LILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINF 123
           L LE W  + L   SGLL NP +    +S+      L    LH+                
Sbjct: 263 LCLEWWLFELLILCSGLLQNPKLETSVLSI-----CLTTATLHYV--------------- 302

Query: 124 IMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADL 183
                   + V   +S   SN+LGA  P+ A+ SVL      +  S  FS ++  FR  +
Sbjct: 303 ------IPVGVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESSFFSILLFAFRNII 356

Query: 184 SKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGL 243
              F++  EVV  V++L P L +S  L+G   +L+GVA G GWQ I A  N+  YY++G 
Sbjct: 357 GYAFSNSKEVVDYVADLSPLLCLSFVLDGFTAVLNGVARGCGWQHIGALNNVVAYYLVGA 416

Query: 244 PMGCLLGFKTSLD 256
           P+G  L F   L+
Sbjct: 417 PVGIYLAFSCELN 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 50/219 (22%)

Query: 50  FAVSIFNYMLTFVTL--------ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLI 101
           F++  F Y++  +TL         LE W  + L  ++G++PNP I          + SL+
Sbjct: 253 FSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEI----------NTSLV 302

Query: 102 LQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFS 157
              ++ T++          I++++ Y         GLSAAAS    NELGA + K AK +
Sbjct: 303 AICVN-TEA----------ISYMLTY---------GLSAAASTRVSNELGAGNVKGAKKA 342

Query: 158 VLVVNANSIFISVVFS---AVVLIFRADLSKPFASDSEVV-QAVSNLIPSLAISVFLNGI 213
             V    S+ +S+V +    +VL+   D      SDS V+ +  ++L   LA S+ L+ I
Sbjct: 343 TSV----SVKLSLVLALGVVIVLLVGHDGWVGLFSDSYVIKEEFASLRFFLAASITLDSI 398

Query: 214 QPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK 252
           Q +LSGVA G GWQ +V  +NLA +Y++G+P+    GFK
Sbjct: 399 QGVLSGVARGCGWQRLVTVINLATFYLIGMPIAAFCGFK 437

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 21/214 (9%)

Query: 55  FNYMLTFVTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLI 114
            +Y    + L L + F+       G + +  +L      +Y  PS  +  + ++  +LLI
Sbjct: 218 LSYWFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLI 277

Query: 115 LTWWWFIN---------FIMNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFSVLVV 161
           L+     N           +   +    + +G+ AA S    NELGA +P+ A+ +V   
Sbjct: 278 LSSGLLPNPKLETSVLSICLTTSSLHCVIPMGIGAAGSTRISNELGAGNPEVARLAVFA- 336

Query: 162 NANSIFI----SVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPIL 217
               IF+    + + S ++   +      F++  EVV  V+ L   L +S  ++G   +L
Sbjct: 337 ---GIFLWFLEATICSTLLFTCKNIFGYAFSNSKEVVDYVTELSSLLCLSFMVDGFSSVL 393

Query: 218 SGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF 251
            GVA GSGWQ I A+ N+  YY++G P+G  LGF
Sbjct: 394 DGVARGSGWQNIGAWANVVAYYLLGAPVGFFLGF 427

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 4/125 (3%)

Query: 137 GLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSE 192
           GLSAA S    NELGA + K AK +  V    S+ +++     +L+        F++   
Sbjct: 310 GLSAATSTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIAILVGHDAWVGLFSNSHV 369

Query: 193 VVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK 252
           + +  ++L   LA S+ L+ IQ +LSGVA G GWQ +   +NL  +Y++G+P+  L GFK
Sbjct: 370 IKEGFASLRFFLAASITLDSIQGVLSGVARGCGWQRLATVINLGTFYLIGMPISVLCGFK 429

Query: 253 TSLDS 257
             L +
Sbjct: 430 LKLHA 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 137 GLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSE 192
           G S AAS    N LGA   + A+ S  V    ++  +V FS ++L  +  +   F +D +
Sbjct: 311 GFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRD 370

Query: 193 VVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK 252
           ++  V+ ++P  A+S     +     GV  GSG Q + A VN   YY++GLP+G  L F 
Sbjct: 371 IINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFA 430

Query: 253 TSL 255
           T+L
Sbjct: 431 TTL 433

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
442558067	506	TT12a [Gossypium arboreum]	0.642	0.326	0.648	3e-59
308220266	505	TT12-1 MATE transporter [Malus x domesti	0.638	0.324	0.626	1e-57
308220270	514	TT12-2 MATE transporter [Malus x domesti	0.638	0.319	0.616	4e-57
260401276	504	MATE transporter [Medicago truncatula]	0.638	0.325	0.616	5e-57
357494057	589	Protein TRANSPARENT TESTA [Medicago trun	0.665	0.290	0.571	8e-57
302143500	431	unnamed protein product [Vitis vinifera]	0.642	0.382	0.648	2e-54
224085427	505	predicted protein [Populus trichocarpa]	0.638	0.324	0.595	3e-54
224085425	505	predicted protein [Populus trichocarpa]	0.638	0.324	0.595	3e-54
225446757	506	PREDICTED: protein TRANSPARENT TESTA 12-	0.642	0.326	0.648	5e-54
225446759	504	PREDICTED: protein TRANSPARENT TESTA 12	0.642	0.327	0.628	3e-52

>gi|442558067|gb|AGC55236.1| TT12a [Gossypium arboreum]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 129/199 (64%), Positives = 142/199 (71%), Gaps = 34/199 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           V L LEIW+NQGL  ISGLL NPTI LDS+S+                            
Sbjct: 284 VMLCLEIWYNQGLVLISGLLSNPTIALDSISI---------------------------- 315

Query: 122 NFIMNYLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              MNYLNWD+  MLGLSAAA    SNELGA HP+ AKFSV VVN  SI IS+VFSA+VL
Sbjct: 316 --CMNYLNWDMQFMLGLSAAASVRVSNELGAGHPRVAKFSVFVVNGTSILISIVFSAIVL 373

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           IFR  LSK F SDSEV++AVS+L P LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 
Sbjct: 374 IFRVGLSKAFTSDSEVIEAVSDLTPLLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAT 433

Query: 238 YYIMGLPMGCLLGFKTSLD 256
           YYI+GLP+GC+LGFKTSL 
Sbjct: 434 YYIIGLPIGCVLGFKTSLG 452

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308220266|gb|ADO22709.1| TT12-1 MATE transporter [Malus x domestica] gi|308220268|gb|ADO22710.1| TT12-1 MATE transporter [Malus x domestica]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 140/198 (70%), Gaps = 34/198 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           + L LEIW+NQGL  ISGLL NPTI LDS+S+                            
Sbjct: 283 IMLCLEIWYNQGLVLISGLLSNPTISLDSISI---------------------------- 314

Query: 122 NFIMNYLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              MNYLNWD+  MLGLSAAA    SNELGA HPK AKFSV VVN  SI IS+VFSA++L
Sbjct: 315 --CMNYLNWDMQFMLGLSAAASVRVSNELGAGHPKVAKFSVFVVNGTSILISIVFSAIIL 372

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           IFR  LSK F SD+EV+ AVS+L   LAISVFLNGIQPILSGVAIGSGWQA+VAYVNL C
Sbjct: 373 IFRVGLSKLFTSDAEVIAAVSDLTSLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLTC 432

Query: 238 YYIMGLPMGCLLGFKTSL 255
           YYI+GLP+GC+LGFKTS+
Sbjct: 433 YYIIGLPIGCVLGFKTSM 450

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308220270|gb|ADO22711.1| TT12-2 MATE transporter [Malus x domestica] gi|308220272|gb|ADO22712.1| TT12-2 MATE transporter [Malus x domestica]

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 122/198 (61%), Positives = 139/198 (70%), Gaps = 34/198 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           + L LEIW++QGL  ISGLL NPTI LDS+S+                            
Sbjct: 283 IMLCLEIWYSQGLVLISGLLANPTIALDSISI---------------------------- 314

Query: 122 NFIMNYLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              MNYLNWD+  MLGL+AAA    SNELGA H K AKFSV VVN  SI IS++F+A++L
Sbjct: 315 --CMNYLNWDMQFMLGLAAAASVRVSNELGAGHAKVAKFSVFVVNGTSILISIIFTAIIL 372

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           IFR  LSK F SD EVV AVSNL P LAISVFLNGIQPILSGVAIGSGWQA+VAYVNL C
Sbjct: 373 IFRVALSKLFTSDDEVVTAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLTC 432

Query: 238 YYIMGLPMGCLLGFKTSL 255
           YYI+GLP+GC+LGFKTS+
Sbjct: 433 YYIIGLPIGCVLGFKTSM 450

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260401276|gb|ACX37118.1| MATE transporter [Medicago truncatula]

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 122/198 (61%), Positives = 140/198 (70%), Gaps = 34/198 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           V L LEIW+NQGL  ISGLL NPT+ LDS+S+                            
Sbjct: 281 VMLCLEIWYNQGLVLISGLLSNPTVALDSISI---------------------------- 312

Query: 122 NFIMNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              MNYLNWD+ VMLGL AAAS    NELGAAHP+ AKF++ VVN NSI ISVV SA++L
Sbjct: 313 --CMNYLNWDMQVMLGLGAAASVRISNELGAAHPRVAKFAIFVVNGNSILISVVLSAIIL 370

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           IFR  L   F SDSEV++AVS+L P LAISV LNGIQPILSGVAIGSGWQA+VAYVNLAC
Sbjct: 371 IFRDGLRNLFTSDSEVIEAVSDLTPLLAISVLLNGIQPILSGVAIGSGWQALVAYVNLAC 430

Query: 238 YYIMGLPMGCLLGFKTSL 255
           YY++GL +GC+LGFKTSL
Sbjct: 431 YYVIGLTVGCVLGFKTSL 448

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494057|ref|XP_003617317.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355518652|gb|AET00276.1| Protein TRANSPARENT TESTA [Medicago truncatula]

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 124/217 (57%), Positives = 146/217 (67%), Gaps = 46/217 (21%)

Query: 55  FNYMLTFVTLIL-------EIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHF 107
           ++YML F  ++L       EIW+NQGL  ISGLL NPT+ LDS+S+              
Sbjct: 285 YDYMLIFTPIMLFEHQNYLEIWYNQGLVLISGLLSNPTVALDSISI-------------- 330

Query: 108 TDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAA---------SNELGAAHPKAAKFSV 158
                            MNYLNWD+ VMLGL AAA         SNELGAAHP+ AKF++
Sbjct: 331 ----------------CMNYLNWDMQVMLGLGAAARSCNFSVRISNELGAAHPRVAKFAI 374

Query: 159 LVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILS 218
            VVN NSI ISVV SA++LIFR  L   F SDSEV++AVS+L P LAISV LNGIQPILS
Sbjct: 375 FVVNGNSILISVVLSAIILIFRDGLRNLFTSDSEVIEAVSDLTPLLAISVLLNGIQPILS 434

Query: 219 GVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSL 255
           GVAIGSGWQA+VAYVNLACYY++GL +GC+LGFKTSL
Sbjct: 435 GVAIGSGWQALVAYVNLACYYVIGLTVGCVLGFKTSL 471

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143500|emb|CBI22061.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/199 (64%), Positives = 143/199 (71%), Gaps = 34/199 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           V L LEIW++QGL  ISGLLPNPT+ LDS+S+                            
Sbjct: 208 VMLCLEIWYSQGLVLISGLLPNPTVSLDSISI---------------------------- 239

Query: 122 NFIMNYLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              MNYLNWDI  MLGLSA A    SNELGAAHP  AKFSVLVVNANSI IS+ FSA+VL
Sbjct: 240 --CMNYLNWDITFMLGLSAGASVRISNELGAAHPLVAKFSVLVVNANSIIISIFFSAIVL 297

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           IF+  LSK F SD+EV+ AVSNL P LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 
Sbjct: 298 IFKIGLSKLFTSDTEVINAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAT 357

Query: 238 YYIMGLPMGCLLGFKTSLD 256
           YY++GLP+GC+LGFKTSL 
Sbjct: 358 YYLIGLPIGCVLGFKTSLG 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085427|ref|XP_002307572.1| predicted protein [Populus trichocarpa] gi|222857021|gb|EEE94568.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 137/198 (69%), Gaps = 34/198 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           V L LEIW++QGL  ISGLL +PT+ LDS+S+                            
Sbjct: 283 VMLCLEIWYSQGLVLISGLLTDPTVALDSISI---------------------------- 314

Query: 122 NFIMNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              MNYLNWD+  MLGLSA+ S    NELGA HPK AK SV+VVN  SI IS++FSA+VL
Sbjct: 315 --CMNYLNWDMQFMLGLSASTSVRVGNELGAGHPKVAKLSVMVVNGTSIVISIIFSAIVL 372

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           IFR  LSK F +D EV+ AVS+L P LAISVFLNGIQPILSGVAIGSGWQA VAYVNLA 
Sbjct: 373 IFRVGLSKLFTTDYEVIDAVSDLTPLLAISVFLNGIQPILSGVAIGSGWQATVAYVNLAT 432

Query: 238 YYIMGLPMGCLLGFKTSL 255
           YY++GLP+GC+L FKTSL
Sbjct: 433 YYVIGLPIGCVLAFKTSL 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085425|ref|XP_002307571.1| predicted protein [Populus trichocarpa] gi|222857020|gb|EEE94567.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 137/198 (69%), Gaps = 34/198 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           V L LEIW++QGL  ISGLL +PT+ LDS+S+                            
Sbjct: 283 VMLCLEIWYSQGLVLISGLLTDPTVALDSISI---------------------------- 314

Query: 122 NFIMNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              MNYLNWD+  MLGLSA+ S    NELGA HPK AK SV+VVN  SI IS++FSA+VL
Sbjct: 315 --CMNYLNWDMQFMLGLSASTSVRVGNELGAGHPKVAKLSVMVVNGTSIVISIIFSAIVL 372

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           IFR  LSK F +D EV+ AVS+L P LAISVFLNGIQPILSGVAIGSGWQA VAYVNLA 
Sbjct: 373 IFRVGLSKLFTTDYEVIDAVSDLTPLLAISVFLNGIQPILSGVAIGSGWQATVAYVNLAT 432

Query: 238 YYIMGLPMGCLLGFKTSL 255
           YY++GLP+GC+L FKTSL
Sbjct: 433 YYVIGLPIGCVLAFKTSL 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446757|ref|XP_002282907.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera]

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/199 (64%), Positives = 143/199 (71%), Gaps = 34/199 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           V L LEIW++QGL  ISGLLPNPT+ LDS+S+                            
Sbjct: 283 VMLCLEIWYSQGLVLISGLLPNPTVSLDSISI---------------------------- 314

Query: 122 NFIMNYLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              MNYLNWDI  MLGLSA A    SNELGAAHP  AKFSVLVVNANSI IS+ FSA+VL
Sbjct: 315 --CMNYLNWDITFMLGLSAGASVRISNELGAAHPLVAKFSVLVVNANSIIISIFFSAIVL 372

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           IF+  LSK F SD+EV+ AVSNL P LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 
Sbjct: 373 IFKIGLSKLFTSDTEVINAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAT 432

Query: 238 YYIMGLPMGCLLGFKTSLD 256
           YY++GLP+GC+LGFKTSL 
Sbjct: 433 YYLIGLPIGCVLGFKTSLG 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446759|ref|XP_002282932.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] gi|302143501|emb|CBI22062.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 142/199 (71%), Gaps = 34/199 (17%)

Query: 62  VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFI 121
           V L LEIW+NQGL  ISGLL NPTI LDS+S+                            
Sbjct: 282 VMLCLEIWYNQGLVLISGLLSNPTISLDSISI---------------------------- 313

Query: 122 NFIMNYLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              MNYLNWD+  MLGLSAA     SNELGA+HPK AK SVLVVN NSI IS+ FSA++L
Sbjct: 314 --CMNYLNWDMQFMLGLSAATSVRVSNELGASHPKVAKLSVLVVNTNSIIISIFFSAIIL 371

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           IF+  LSK F +D+EV++AVSNL P LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 
Sbjct: 372 IFKVGLSKLFTNDAEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAT 431

Query: 238 YYIMGLPMGCLLGFKTSLD 256
           YY++GLP+GC+LGFKTSL 
Sbjct: 432 YYLIGLPIGCVLGFKTSLG 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2077725	507	TT12 "AT3G59030" [Arabidopsis	0.525	0.266	0.604	1.5e-59
TAIR|locus:2144421	498	AT5G38030 "AT5G38030" [Arabido	0.513	0.265	0.441	1.3e-31
TAIR|locus:2036848	501	AT1G61890 "AT1G61890" [Arabido	0.459	0.235	0.475	8.7e-31
TAIR|locus:2088822	500	AT3G26590 "AT3G26590" [Arabido	0.513	0.264	0.433	1.3e-30
TAIR|locus:2010401	522	RSH2 "AT1G12950" [Arabidopsis	0.513	0.252	0.448	8.4e-30
TAIR|locus:2028115	515	AT1G23300 "AT1G23300" [Arabido	0.525	0.262	0.431	1.1e-29
TAIR|locus:2027322	503	AT1G11670 "AT1G11670" [Arabido	0.459	0.234	0.467	5.2e-29
TAIR|locus:2015368	484	AT1G47530 "AT1G47530" [Arabido	0.525	0.278	0.410	5.3e-29
TAIR|locus:2206960	494	AT1G33110 "AT1G33110" [Arabido	0.509	0.265	0.4	1.8e-26
TAIR|locus:2089955	506	AT3G21690 "AT3G21690" [Arabido	0.797	0.405	0.359	7.7e-26

TAIR|locus:2077725 TT12 "AT3G59030" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
 Identities = 84/139 (60%), Positives = 99/139 (71%)

Query:   121 INFIMNYLNWDINVMLGLSAA----ASNELGAAHPKAAKFSVLVVNANXXXXXXXXXXXX 176
             I+  M YLNWD+  MLGLSAA     SNELGA +P+ A  SV+VVN              
Sbjct:   314 ISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIV 373

Query:   177 XXXRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 236
                R  LSK F SD+EV+ AVS+L P LA+S+FLNGIQPILSGVAIGSGWQA+VAYVNL 
Sbjct:   374 LVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLV 433

Query:   237 CYYIMGLPMGCLLGFKTSL 255
              YY++GLP+GC+LGFKTSL
Sbjct:   434 TYYVIGLPIGCVLGFKTSL 452

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010231 "maintenance of seed dormancy" evidence=IMP

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010023 "proanthocyanidin biosynthetic process" evidence=IMP

GO:0015299 "solute:hydrogen antiporter activity" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
 Identities = 60/136 (44%), Positives = 82/136 (60%)

Query:   121 INFIMNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFSVLVVNANXXXXXXXXXXXX 176
             ++  MN L W   + +G++AA S    NELGA HP+ AKFS+LV                
Sbjct:   307 LSICMNILGWTAMIAIGMNAAVSVRVSNELGAKHPRTAKFSLLVAVITSTVIGLAISIAL 366

Query:   177 XXXRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 236
                R      F  D EV+  V +L P LA+S+ +N +QP+LSGVA+G+GWQA+VAYVN+ 
Sbjct:   367 LIFRDKYPSLFVGDEEVIIVVKDLTPILAVSIVINNVQPVLSGVAVGAGWQAVVAYVNIV 426

Query:   237 CYYIMGLPMGCLLGFK 252
             CYY+ G+P G LLG+K
Sbjct:   427 CYYVFGIPFGLLLGYK 442

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 8.7e-31, Sum P(2) = 8.7e-31
 Identities = 58/122 (47%), Positives = 77/122 (63%)

Query:   134 VMLGLSAAAS----NELGAAHPKAAKFSVLVVNANXXXXXXXXXXXXXXXRADLSKPFAS 189
             V +G +AAAS    NELGA +P+AA FS +V                   R  +S  F  
Sbjct:   323 VSVGFNAAASVRVSNELGAGNPRAAAFSTVVTTGVSFLLSVFEAIVVLSWRHVISYAFTD 382

Query:   190 DSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLL 249
                V +AV++L P LAI++ LNGIQP+LSGVA+G GWQA VAYVN+ CYY++G+P+G +L
Sbjct:   383 SPAVAEAVADLSPFLAITIVLNGIQPVLSGVAVGCGWQAFVAYVNIGCYYVVGIPVGFVL 442

Query:   250 GF 251
             GF
Sbjct:   443 GF 444

GO:0005215 "transporter activity" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
 Identities = 59/136 (43%), Positives = 81/136 (59%)

Query:   121 INFIMNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFSVLVVNANXXXXXXXXXXXX 176
             ++  MN L W   + +G++ A S    NELGA HP+ AKFS+LV                
Sbjct:   307 LSICMNILGWTAMIAIGMNTAVSVRVSNELGANHPRTAKFSLLVAVITSTLIGFIVSMIL 366

Query:   177 XXXRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 236
                R      F  D +V+  V  L P LA+S+ +N +QP+LSGVA+G+GWQA+VAYVN+A
Sbjct:   367 LIFRDQYPSLFVKDEKVIILVKELTPILALSIVINNVQPVLSGVAVGAGWQAVVAYVNIA 426

Query:   237 CYYIMGLPMGCLLGFK 252
             CYY+ G+P G LLG+K
Sbjct:   427 CYYVFGIPFGLLLGYK 442

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 8.4e-30, Sum P(2) = 8.4e-30
 Identities = 61/136 (44%), Positives = 79/136 (58%)

Query:   121 INFIMNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFSVLVVNANXXXXXXXXXXXX 176
             ++  MN L W   V  G +AA S    NELGA+HP+ AKFS++V                
Sbjct:   329 LSICMNILGWAAMVAFGTNAAVSVRVSNELGASHPRTAKFSLVVAVILSTAIGMFIAAGL 388

Query:   177 XXXRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 236
                R +    F  D EV   V  L P LA  + +N +QP+LSGVA+G+GWQA+VAYVN+A
Sbjct:   389 LFFRNEYPVLFVEDEEVRNVVRELTPMLAFCIVINNVQPVLSGVAVGAGWQAVVAYVNIA 448

Query:   237 CYYIMGLPMGCLLGFK 252
             CYY+ G+P G LLGFK
Sbjct:   449 CYYLFGVPFGLLLGFK 464

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
 Identities = 60/139 (43%), Positives = 80/139 (57%)

Query:   121 INFIMNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFSVLVVNANXXXXXXXXXXXX 176
             ++  MN L W I V  G +AA S    NELGA HP+ AKF ++V                
Sbjct:   306 LSICMNILGWPIMVAFGFNAAVSVRESNELGAEHPRRAKFLLIVAMITSVSIGIVISVTL 365

Query:   177 XXXRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 236
                R      F+ D EV   V  L P LA+++ +N IQP+LSGVA+G+GWQ IVAYVN+ 
Sbjct:   366 IVLRDKYPAMFSDDEEVRVLVKQLTPLLALTIVINNIQPVLSGVAVGAGWQGIVAYVNIG 425

Query:   237 CYYIMGLPMGCLLGFKTSL 255
             CYY+ G+P+G +LG+K  L
Sbjct:   426 CYYLCGIPIGLVLGYKMEL 444

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
 Identities = 57/122 (46%), Positives = 75/122 (61%)

Query:   134 VMLGLSAAAS----NELGAAHPKAAKFSVLVVNANXXXXXXXXXXXXXXXRADLSKPFAS 189
             V +G +AAAS    NELGA +P++A FS  V                   R  +S  F  
Sbjct:   326 VSVGFNAAASVRVSNELGAGNPRSAAFSTAVTTGVSFLLSLFEAIVILSWRHVISYIFTD 385

Query:   190 DSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLL 249
                V +AV+ L P LAI++ LNG+QP+LSGVA+G GWQA VAYVN+ CYYI+G+P+G +L
Sbjct:   386 SPAVAEAVAELSPFLAITIVLNGVQPVLSGVAVGCGWQAYVAYVNIGCYYIVGIPIGYVL 445

Query:   250 GF 251
             GF
Sbjct:   446 GF 447

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 5.3e-29, Sum P(2) = 5.3e-29
 Identities = 57/139 (41%), Positives = 76/139 (54%)

Query:   121 INFIMNYLNWDINVMLGLSAA----ASNELGAAHPKAAKFSVLVVNANXXXXXXXXXXXX 176
             I+  MN   W   + +G +AA     SNELGA +   AKFSV+VV+              
Sbjct:   297 ISICMNIEGWTAMISIGFNAAISVRVSNELGAGNAALAKFSVIVVSITSTLIGIVCMIVV 356

Query:   177 XXXRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 236
                +      F S   V    + +   L  +V LN +QP+LSGVA+G+GWQA+VAYVN+A
Sbjct:   357 LATKDSFPYLFTSSEAVAAETTRIAVLLGFTVLLNSLQPVLSGVAVGAGWQALVAYVNIA 416

Query:   237 CYYIMGLPMGCLLGFKTSL 255
             CYYI+GLP G +LGF   L
Sbjct:   417 CYYIIGLPAGLVLGFTLDL 435

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
 Identities = 54/135 (40%), Positives = 77/135 (57%)

Query:   125 MNYLNWDINVMLGLSAAAS----NELGAAHPKAAKFSVLVVNANXXXXXXXXXXXXXXXR 180
             +N    ++ + LG  AAAS    NELG+ +PK AKF+ L                    R
Sbjct:   302 LNINGLEMMIALGFLAAASVRVSNELGSGNPKGAKFATLTAVFTSLSLGIVLFFVFLFLR 361

Query:   181 ADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 240
               +S  F +   V   V++L P LA S+ +N +QP+LSGVA+G+GWQ  V YVNLACYY+
Sbjct:   362 GRVSYIFTTSEAVAAEVADLSPLLAFSILMNSVQPVLSGVAVGAGWQGYVTYVNLACYYL 421

Query:   241 MGLPMGCLLGFKTSL 255
             +G+P+G +LG+   L
Sbjct:   422 VGIPIGIILGYVVGL 436

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 7.7e-26, P = 7.7e-26
 Identities = 79/220 (35%), Positives = 112/220 (50%)

Query:    41 LLCSFQGLVFAVSIFNYMLTFVTLILEIWFNQGLAPISGL-----LPNPTILLDSVSVRY 95
             L+ S    +  V+ F Y++T      E W    +   SGL     L   + ++  +   Y
Sbjct:   236 LVLSLSWWIIVVAQFVYIVTSERC-RETWRGFSVQAFSGLWSFFKLSAASAVMLCLETWY 294

Query:    96 FHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAA----ASNELGAAHP 151
             F   ++L  L   ++  L L     ++  M    W   + +G +AA     SNELGA +P
Sbjct:   295 FQILVLLAGL--LENPELALD---SLSICMTISGWVFMISVGFNAAISVRVSNELGAGNP 349

Query:   152 KAAKFSVLVVNANXXXXXXXXXXXXXXXRADLSKPFASDSEVVQAVSNLIPSLAISVFLN 211
             K+A FSV++VN                 R  LS  F    EV  AVS+L P LA+++ LN
Sbjct:   350 KSAAFSVIIVNIYSLITCVILAIVILACRDVLSYAFTEGKEVSDAVSDLCPLLAVTLVLN 409

Query:   212 GIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF 251
             GIQP+LSGVA+G GWQ  VA VN+ CYYI+G+P+G L GF
Sbjct:   410 GIQPVLSGVAVGCGWQTFVAKVNVGCYYIIGIPLGALFGF 449

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V001238 hypothetical protein (505 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	1e-36
pfam01554	161	pfam01554, MatE, MatE	4e-12
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	1e-10
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	2e-08
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	6e-07
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	3e-06
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	3e-06
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	1e-05
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	0.001
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	0.002

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  133 bits (338), Expect = 1e-36
 Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 45/232 (19%)

Query: 30  WWPRLFGWEWRLLCSFQGLV-FAVSIFNYMLTFVTLILEIWFNQGLAPISGLLPNPTILL 88
            W    G+       +   +  A+       + + L LE W  + L  ++GLLP  T+ L
Sbjct: 211 TWG---GFSREAFRGWGPFLKLAIP------SALMLCLEWWAFEILVLLAGLLP-GTVAL 260

Query: 89  DSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAAS----N 144
            + S+                               +   +    + LG+S AAS    N
Sbjct: 261 AAQSI------------------------------CLTTTSLLYMIPLGISIAASVRVGN 290

Query: 145 ELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSL 204
           ELGA +PK AK + +V    S+ I VV + ++L+ R   +  F SD EV+  V++L+P L
Sbjct: 291 ELGAGNPKRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPIL 350

Query: 205 AISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLD 256
           A+    +G+Q +LSGV  G G Q + AYVNL  YY++GLP+G LL F   L 
Sbjct: 351 ALFQIFDGLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLG 402

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 62.2 bits (152), Expect = 4e-12
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 118 WWFINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177
              I   +      + +   L+      LGA + K A  ++      S+ IS+  + +++
Sbjct: 38  ASLIFMFL------LGLSTALTTLVGQALGAGNFKRAGVALRQGLILSLLISLPIALLII 91

Query: 178 IFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLAC 237
           +FR  +   F  D EV++  S  +  LA+ +    +Q +LSG   G+G      Y+NL  
Sbjct: 92  LFREPILSLFTQDEEVLELASKYLRILALGIPFLSLQFVLSGFLRGAGDTKPPLYINLIS 151

Query: 238 YYIMGLPMGCL 248
             ++ +P+  L
Sbjct: 152 -LLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 134 VMLGLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFAS 189
              G++ A +      LGA + K A+ +  +    S+ I+++ + ++L+FR  +   F +
Sbjct: 292 PPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTT 351

Query: 190 DSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLL 249
           D EV+     L+   A+    +GIQ +LSGV  G+G   I   ++L  Y+   LP+  LL
Sbjct: 352 DPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLL 411

Query: 250 GF 251
           GF
Sbjct: 412 GF 413

Length = 455

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 4/124 (3%)

Query: 136 LGLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDS 191
           LG+S AA+      LGA  P  A+ + LV     +  + + + ++L+F   ++  + +D 
Sbjct: 282 LGISMAATVRVGFALGAGDPADARRAGLVGLGLGVGFAALTALLLLLFPEQIAGLYTNDP 341

Query: 192 EVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF 251
            V+   ++L+   A+    +GIQ + +G   G     +   + L  Y+ +GLP+G LL F
Sbjct: 342 AVIALAASLLVFAALFQLFDGIQVVAAGALRGYKDTRVPFLLALISYWGIGLPLGYLLAF 401

Query: 252 KTSL 255
            T L
Sbjct: 402 TTGL 405

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 49.4 bits (119), Expect = 6e-07
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 4/124 (3%)

Query: 137 GLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSE 192
           G S AAS      LGA  P  A+          +    +   ++ IF   L+  F  D E
Sbjct: 280 GFSMAASTLVGQNLGAGDPDEARRYGKRALRLGVLFMGLLGLLLFIFAPPLASLFTPDPE 339

Query: 193 VVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK 252
           V++     +  +A+S     I  +LSG   G+G       +NL   +++ LP+  LLGF 
Sbjct: 340 VIELGVLYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYLLGFV 399

Query: 253 TSLD 256
             L 
Sbjct: 400 LGLG 403

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 136 LGLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDS 191
           L L+ A +     ELGA     A+    +  A  + ++++ +  +++FR  ++  +  D 
Sbjct: 292 LSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDP 351

Query: 192 EVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF 251
           EVV   S+L+   A+  F + IQ I SG   G     ++ ++    Y+++GLP+G +L  
Sbjct: 352 EVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILAL 411

Query: 252 KTSL 255
              +
Sbjct: 412 TDPM 415

Length = 456

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 120 FINFIMNYLNWDINVMLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIF 179
             +F          +   +S   +  +GA   + AK  +      S+ I ++   +V  F
Sbjct: 269 INSFAFL---PPSAIGQAVSTFVAQNIGAGKIERAKKGLRTGIIISLIIGLIIILLVFFF 325

Query: 180 RADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYY 239
              L   F SD EV++  +  +   +I   L GI  + +G+  G G       +++   +
Sbjct: 326 APQLLGLFTSDPEVIEIGAEYLRIYSIDYILFGILFVFNGLFRGLGKTKFPMIISILRLW 385

Query: 240 IMGLPM 245
           ++ +P+
Sbjct: 386 LVRIPL 391

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 136 LGLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDS 191
            GL+ A S      LGA     A+  V         I V+   +  +F   + + F +D 
Sbjct: 290 FGLARATSTMVGQNLGAGQIDRAEEIVKKAALLIFLILVIGGVLAFLFAEPIVRVFINDP 349

Query: 192 EVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF 251
           EV++  ++ +  +A S    G+  +++G   GSG       +++   +++ +P+  LL +
Sbjct: 350 EVIKEGADFLRIVAPSFPFFGLFQVINGAFRGSGHTLTAMIISILRLWVIRIPLAYLLAY 409

Query: 252 KTSLDS 257
              L  
Sbjct: 410 VLGLGV 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 152 KAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLN 211
           +A K +++V    ++   +V   ++L+F   +   F  D E++   + ++    ++  L 
Sbjct: 304 QALKLALIV----ALIYGLVLFLILLLFPEQIVSLFTDDPELIALAARILRIFLLAFPLA 359

Query: 212 GIQPILSG--VAIGSGWQAIV 230
           GI  +LSG   AIG   +A +
Sbjct: 360 GINIVLSGYFQAIGKAKRAAL 380

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 137 GLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSE 192
           G   A S      LGA  PK AK    V    S+ + +V + ++++FR  +++ F +D E
Sbjct: 270 GFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPE 329

Query: 193 VVQAVSNLIPSLA 205
           V++  +  +  +A
Sbjct: 330 VLELAAIYLIFVA 342

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.94
PRK10189	478	MATE family multidrug exporter; Provisional	99.93
PRK00187	464	multidrug efflux protein NorA; Provisional	99.92
PRK01766	456	multidrug efflux protein; Reviewed	99.91
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.87
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.86
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.85
PRK10189	478	MATE family multidrug exporter; Provisional	99.84
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.83
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.82
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.81
PRK00187	464	multidrug efflux protein NorA; Provisional	99.81
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.77
PRK01766	456	multidrug efflux protein; Reviewed	99.73
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.58
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.56
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.38
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.31
PRK15099	416	O-antigen translocase; Provisional	99.11
KOG1347	473	consensus Uncharacterized membrane protein, predic	98.88
TIGR01695	502	mviN integral membrane protein MviN. This model re	98.87
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	98.85
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.79
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.4
PRK15099	416	O-antigen translocase; Provisional	98.39
PRK10459	492	colanic acid exporter; Provisional	98.29
COG2244	480	RfbX Membrane protein involved in the export of O-	98.26
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	97.79
COG0728	518	MviN Uncharacterized membrane protein, putative vi	94.88
PRK10459	492	colanic acid exporter; Provisional	94.03
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	93.58
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	93.54
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	93.49
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	93.14
COG2244	480	RfbX Membrane protein involved in the export of O-	87.38
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	87.16

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.94  E-value=7.8e-26  Score=218.24  Aligned_cols=207  Identities=22%  Similarity=0.299  Sum_probs=178.1

Q ss_pred             chHhHHhcCCChH-HHHHHHHHHhhHHhhc-cccccchhhhhhhhhchhhHhhHHHHHHHH----HHHHHHHHHHHHHHH
Q 037649            3 ATANRILSGLPSD-VIEEYLGRQRMAFRWW-PRLFGWEWRLLCSFQGLVFAVSIFNYMLTF----VTLILEIWFNQGLAP   76 (257)
Q Consensus         3 ~~~at~~s~~~~~-~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~----~~~~le~~~~~i~~~   76 (257)
                      |++||++||...+ +...|+.+....+... ++..+++|+.            +|+++|+|    ++...|...+...+.
T Consensus       199 AA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~i~~lG~p~~~~~~~~~~~~~~~~~  266 (455)
T COG0534         199 AALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKL------------LKEILRLGLPIFLESLSESLGFLLLTL  266 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHH------------HHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            6899999996666 4444444443211121 2223455543            57899999    444556666777888


Q ss_pred             HHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH----HHHhccCChH
Q 037649           77 ISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAA----SNELGAAHPK  152 (257)
Q Consensus        77 ~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~gls~a~----g~~lGa~~~~  152 (257)
                      +.+++|+  .++||+++                              ..++.++.+++..|++.|+    ||++||||+|
T Consensus       267 ~~~~~G~--~~lAa~~i------------------------------~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~  314 (455)
T COG0534         267 FVARLGT--VALAAYGI------------------------------ALRIASFIFMPPFGIAQAVTILVGQNLGAGNYK  314 (455)
T ss_pred             HHHhcCh--HHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            9999994  46899999                              8999999999999999998    9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHH
Q 037649          153 AAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAY  232 (257)
Q Consensus       153 ~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~  232 (257)
                      ++|+..+.+...+..++.+.+.+.+++++++.++|++|+|+.+.+.+++++.+..+++++.+.+.+|++||.||++.+++
T Consensus       315 ~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~  394 (455)
T COG0534         315 RARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFI  394 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHhhc
Q 037649          233 VNLACYYIMGLPMGCLLGFKT  253 (257)
Q Consensus       233 i~l~~~~~i~lPl~~ll~~~~  253 (257)
                      +++.++|++++|++|++++.+
T Consensus       395 ~~~~~~~~~~lp~~~~l~~~~  415 (455)
T COG0534         395 ISLLSYWGFRLPLAYLLGFFF  415 (455)
T ss_pred             HHHHHHHHHHHhHHHHHhhhc
Confidence            999999999999999999973

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.93  E-value=2.5e-24  Score=208.61  Aligned_cols=173  Identities=14%  Similarity=0.050  Sum_probs=160.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTLILEIWFNQGL----APISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~~le~~~~~i~----~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +.+|+++|+|.|..+|...++..    +.+.+++|+  .++||+++                              ..++
T Consensus       256 ~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I------------------------------~~~i  303 (478)
T PRK10189        256 AIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFI------------------------------AFSI  303 (478)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHH------------------------------HHHH
Confidence            45789999998888887776654    446677885  46899999                              8899


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      .++.+++..|++.|+    ||++||||+|++|+..+.+...+..++++.+++++++++++.++|++|+|+++.+..++++
T Consensus       304 ~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~  383 (478)
T PRK10189        304 AALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWL  383 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999988    9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCC
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLD  256 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG  256 (257)
                      .+..+++++.+.+..+++||.||++.++++++.++|++++|++|++++.+++|
T Consensus       384 ~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g  436 (478)
T PRK10189        384 NALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFG  436 (478)
T ss_pred             HHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999887776

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.92  E-value=9.5e-24  Score=203.37  Aligned_cols=174  Identities=21%  Similarity=0.267  Sum_probs=159.0

Q ss_pred             hhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTLI----LEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~~----le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +.+|+++|+++|..    +|...+.+++.+++++|+.  ++||+++                              ..++
T Consensus       233 ~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i------------------------------~~~i  280 (464)
T PRK00187        233 AALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGST--QLAAHQI------------------------------ALQI  280 (464)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHH------------------------------HHHH
Confidence            34688999995554    4677778889999999964  6899999                              7889


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC--CH---HHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFAS--DS---EVVQAVS  198 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~--d~---~v~~~~~  198 (257)
                      ..+.+.+..|++.++    ||++||||+|++|+..+.+..++..++++.+++++++++++.++|++  |+   |+++.+.
T Consensus       281 ~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~  360 (464)
T PRK00187        281 VSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAV  360 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            999999999999887    99999999999999999999999999999999999999999999974  44   7999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 037649          199 NLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS  257 (257)
Q Consensus       199 ~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG~  257 (257)
                      +++++.+.+.++++++.+..+++||.||++.+++++++++|++++|++|++.+++++|.
T Consensus       361 ~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~  419 (464)
T PRK00187        361 SLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGA  419 (464)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            99999999999999999999999999999999999999999999999999999888773

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.91  E-value=1.1e-22  Score=194.10  Aligned_cols=173  Identities=20%  Similarity=0.314  Sum_probs=158.0

Q ss_pred             hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +.+|+++++++|.    ..|...+.++..+++++|+.  ++|++++                              ..++
T Consensus       236 ~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i------------------------------~~~i  283 (456)
T PRK01766        236 AVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQI------------------------------ALNF  283 (456)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHH------------------------------HHHH
Confidence            4478899999554    45555566778888999954  5899999                              7788


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      .++.+.+..|++.++    ||++|+||+|++|+..+.+..++..++++.+++++.+++++.++|++|+|+.+.+.+++++
T Consensus       284 ~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~  363 (456)
T PRK01766        284 SSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLF  363 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999998887    9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCC
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLD  256 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG  256 (257)
                      ..++.++++++.+.++++||.||++.++++++++.|++++|.+|++.+..++|
T Consensus       364 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G  416 (456)
T PRK01766        364 AALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMG  416 (456)
T ss_pred             HHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999999999999999999999999887776

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.87  E-value=4.8e-21  Score=183.82  Aligned_cols=171  Identities=12%  Similarity=0.128  Sum_probs=151.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTLILEIWFNQGLA----PISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~~le~~~~~i~~----~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +.+|+++++|.|..+|...+....    .+.+++|+. .++|++++                              ..++
T Consensus       231 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~-~~lAa~~i------------------------------~~~i  279 (453)
T PRK09575        231 SLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSA-LTVGAYAI------------------------------VGYL  279 (453)
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCch-HHHHHHHH------------------------------HHHH
Confidence            346889999988887776655543    445566753 35899999                              7889


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC-CHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFAS-DSEVVQAVSNLIP  202 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~-d~~v~~~~~~~l~  202 (257)
                      ..+.+.+..|++.++    ||++||||+||+|+..+.+..+++..+++.++++..+++++.++|++ |||+++.+.++++
T Consensus       280 ~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~  359 (453)
T PRK09575        280 MVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIR  359 (453)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHH
Confidence            999999999999987    99999999999999999999999999999999999999999999995 8999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649          203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS  254 (257)
Q Consensus       203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~  254 (257)
                      +.+.++++++++.+..+++||.||++.++..++.+. ++++|.+|++...+|
T Consensus       360 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ll~~~~G  410 (453)
T PRK09575        360 LHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFILPKWLG  410 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999998764 789999999987544

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.86  E-value=6.8e-22  Score=192.13  Aligned_cols=177  Identities=38%  Similarity=0.579  Sum_probs=170.3

Q ss_pred             HhhHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHH
Q 037649           51 AVSIFNYMLTF----VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMN  126 (257)
Q Consensus        51 ~~~~~~~l~l~----~~~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  126 (257)
                      +++|+++++++    ++.|+|+|.+++..+..|.++|+++.+++.+|                              .++
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI------------------------------~~~  292 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSI------------------------------CLE  292 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHH------------------------------HHH
Confidence            46799999999    78899999999999999999999999999999                              788


Q ss_pred             HHHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHH
Q 037649          127 YLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIP  202 (257)
Q Consensus       127 ~~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~  202 (257)
                      +..+.++...|++.++    +|++|++|+++||.....+...++.++...+..++.+++.+..+|++|+|+.+.+.+..+
T Consensus       293 ~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~p  372 (473)
T KOG1347|consen  293 IGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTP  372 (473)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            9999999999999997    999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 037649          203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS  257 (257)
Q Consensus       203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG~  257 (257)
                      +.+...++++.|.+..|+.||.|+|+..+++|+.++|++|+|++..++|.+++|+
T Consensus       373 ll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~  427 (473)
T KOG1347|consen  373 LLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGV  427 (473)
T ss_pred             HHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCc
Confidence            9999999999999999999999999999999999999999999999999988874

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.85  E-value=7.2e-20  Score=175.80  Aligned_cols=160  Identities=13%  Similarity=0.082  Sum_probs=136.0

Q ss_pred             hHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHH
Q 037649           53 SIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYL  128 (257)
Q Consensus        53 ~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  128 (257)
                      .+|+++|++.|.    ..+...+.+.+.+++++|+.  ++||+++                              ..++.
T Consensus       230 ~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~--alAa~~I------------------------------~~~i~  277 (441)
T PRK10367        230 NFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSD--IIAVNAV------------------------------LMTLL  277 (441)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHH------------------------------HHHHH
Confidence            368889988444    45566677788999999954  6899999                              88999


Q ss_pred             HHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHH
Q 037649          129 NWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSL  204 (257)
Q Consensus       129 ~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~  204 (257)
                      ++.+++..|++.|+    ||++||||+|++|+..+.+..++.+++.+.+++++.+++++.++|++|+|+++.+.+++++.
T Consensus       278 ~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~  357 (441)
T PRK10367        278 TFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQ  357 (441)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            99999999999998    99999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH----HHHHHhHhcCchhHHHHHHHHHHHHhHHHH
Q 037649          205 AISVFLNGIQP----ILSGVAIGSGWQAIVAYVNLACYYIMGLPM  245 (257)
Q Consensus       205 ~~~~~~~~~~~----~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl  245 (257)
                      +...+....+.    +.+|.+||. |++.++.++++++|+..++.
T Consensus       358 ~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~~~~~~~~~~~~~~~~  401 (441)
T PRK10367        358 VILPLVGVWCYLLDGMFIGATRAA-EMRNSMAVAAAGFALTLLTL  401 (441)
T ss_pred             HHHHHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHHHHHHHHHH
Confidence            86544332333    356666665 79999999999999644443

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.84  E-value=4.2e-19  Score=172.21  Aligned_cols=171  Identities=14%  Similarity=0.121  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHH
Q 037649           53 SIFNYMLTFVTLILE----IWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYL  128 (257)
Q Consensus        53 ~~~~~l~l~~~~~le----~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  128 (257)
                      .+|+++++++|..++    .....+++.++|++|+  .++||+++                              ..++.
T Consensus        27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i------------------------------~~~i~   74 (478)
T PRK10189         27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGL------------------------------ADSFN   74 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHH------------------------------HHHHH
Confidence            368899999666554    4456678899999995  46899999                              77888


Q ss_pred             HHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC--CCHHHHHHHHHHHH
Q 037649          129 NWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFA--SDSEVVQAVSNLIP  202 (257)
Q Consensus       129 ~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft--~d~~v~~~~~~~l~  202 (257)
                      .+.+.+..|++.++    ||++|+||+|++++..+.+..+++.++++.+++.+++++++..+|+  .|+|+.+.+.+|++
T Consensus        75 ~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~  154 (478)
T PRK10189         75 MVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLE  154 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            88888888888776    9999999999999999999999999999999999999999999995  79999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhc----CCC
Q 037649          203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKT----SLD  256 (257)
Q Consensus       203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~----~lG  256 (257)
                      +..++.++.+++.++++++||.||++.++++++++. ++++|+++++.+.+    +||
T Consensus       155 i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~-~~ni~l~~~li~g~~~~~~lG  211 (478)
T PRK10189        155 LTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMN-ILNIIISSILIYGLFSWQGLG  211 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHH-HHHHHHhHHHHhcCCCCCccc
Confidence            999999999999999999999999999999999865 89999999999864    566

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.83  E-value=9.1e-19  Score=168.19  Aligned_cols=174  Identities=11%  Similarity=0.069  Sum_probs=153.6

Q ss_pred             hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      ++.|++++++.|.    .++.....+|+.++|++|+ +.++||+++                              ..++
T Consensus         6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l------------------------------~~~i   54 (441)
T PRK10367          6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAV------------------------------GATA   54 (441)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHH------------------------------HHHH
Confidence            4568899999555    4555667788999999853 335889999                              6677


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      .++.+.+..|++.++    ||++||||+|++++..+.++.+++.++++...+...+.+++.++++.|+|+.+.+.+|+++
T Consensus        55 ~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i  134 (441)
T PRK10367         55 TSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEI  134 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            777777777777665    9999999999999999999999999999999888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS  257 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG~  257 (257)
                      ..++.++..+..++++++||.||++.++++++++. +++++++|++.+.++||.
T Consensus       135 ~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~-~vni~l~~~lI~~~~lGv  187 (441)
T PRK10367        135 RWLSAPASLANLVLLGWLLGVQYARAPVILLVVGN-ILNIVLDLWLVMGLHMNV  187 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH-HHHHHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999999997 889999999999888874

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.82  E-value=1.2e-18  Score=168.41  Aligned_cols=173  Identities=17%  Similarity=0.234  Sum_probs=157.2

Q ss_pred             hhHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTLIL----EIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~~l----e~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +..|.++++++|+.+    +.....+|++++|+++  +.++||+++                              ..++
T Consensus        14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~l------------------------------a~~i   61 (455)
T COG0534          14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGL------------------------------ANPI   61 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHH------------------------------HHHH
Confidence            357889999966654    4556778999999999  457899999                              6777


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      ..+.+.+..|++.++    +|++||||++++|+..+.+...++.+++...++.+.+.+++..+++.++|+.+.+.+|+++
T Consensus        62 ~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i  141 (455)
T COG0534          62 FFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRI  141 (455)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHH
Confidence            888888888888776    9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh-cC-CCC
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK-TS-LDS  257 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~-~~-lG~  257 (257)
                      ..++.++..+..++.+.+||.||+|.+|++++++. +.++.++|++.+. ++ ||+
T Consensus       142 ~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~-~lNivln~llI~g~~g~lGv  196 (455)
T COG0534         142 ILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGN-LLNIVLNYLLIFGLFGGLGV  196 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHHHhhHHHHHhccccccc
Confidence            99999999999999999999999999999999999 8999999999999 57 764

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.81  E-value=5.4e-20  Score=150.76  Aligned_cols=155  Identities=23%  Similarity=0.332  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 037649           62 VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAA  141 (257)
Q Consensus        62 ~~~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~gls~a  141 (257)
                      ++..++...+.+++.+.+++|+.  +++++++                              ..++.++...+..|++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i------------------------------~~~~~~~~~~~~~g~~~a   51 (162)
T PF01554_consen    4 LMQLLQVLGFIIDTIFVGRLGPE--ALAAYGI------------------------------ASSIFSILFMLIFGLATA   51 (162)
T ss_dssp             HHHHHHHHHHHHHHHCCHCCTTC--CCCHCCH------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHH--HHHHHHH------------------------------HHHHHHHHhhhccccccc
Confidence            56678888899999999999754  5899999                              778889999999999988


Q ss_pred             H----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649          142 A----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPIL  217 (257)
Q Consensus       142 ~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~  217 (257)
                      .    ||++|++|+|++|+..+.+..++..++++.+++.+.+++++..+|++|+|+.+.+.+|+++..+..++..++...
T Consensus        52 ~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (162)
T PF01554_consen   52 LQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVF  131 (162)
T ss_dssp             HHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHH
Confidence            8    999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHhcCchhHHHHHHHHHHHHhHHHHHHH
Q 037649          218 SGVAIGSGWQAIVAYVNLACYYIMGLPMGCL  248 (257)
Q Consensus       218 ~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~l  248 (257)
                      +++++|.||++.+++.++++.|++++|++|+
T Consensus       132 ~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl  162 (162)
T PF01554_consen  132 SGILQGIGRTKIAMYISIISFWIINIPLAYL  162 (162)
T ss_dssp             CCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence            9999999999999999999999999999985

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.81  E-value=3.5e-18  Score=164.74  Aligned_cols=167  Identities=15%  Similarity=0.024  Sum_probs=148.0

Q ss_pred             hhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTLI----LEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~~----le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +.+|+++++++|..    .+.....+|+.++|++|+  .++||+++                              ..++
T Consensus         7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~--~alAa~~i------------------------------~~~i   54 (464)
T PRK00187          7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGP--EALAGGGL------------------------------GAAS   54 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHH------------------------------HHHH
Confidence            34788999995554    555667788999999985  46899999                              6778


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      .++...+..|++.++    ||++||||+|++|+..+.+..++++++++..++.+ +.+++..+|+.|||+.+.+.+|+++
T Consensus        55 ~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i  133 (464)
T PRK00187         55 YSFVSIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHL  133 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            888888888888776    99999999999999999999999999998877765 6689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK  252 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~  252 (257)
                      ..++.++..+...+++++||.||++.++++++++. ++++|++|++.|.
T Consensus       134 ~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~~~~~lIfg  181 (464)
T PRK00187        134 LPFALPGYLSFMALRGFTSALGRAGPVMVISLAGA-VANLLLNYALIEG  181 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            99999999999999999999999999999999998 6799999999875

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.77  E-value=3.7e-17  Score=156.97  Aligned_cols=172  Identities=9%  Similarity=0.015  Sum_probs=151.5

Q ss_pred             hHHHHHHHHHHHHHH----HHHHHHHHHHHhcC-CchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           53 SIFNYMLTFVTLILE----IWFNQGLAPISGLL-PNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        53 ~~~~~l~l~~~~~le----~~~~~i~~~~~g~l-g~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      .+|+++++++|..++    .....+|+.+.|++ |+  .+++++++                              ..++
T Consensus        10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~--~~laa~~~------------------------------~~~~   57 (453)
T PRK09575         10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGA--EGLAGINM------------------------------AWPV   57 (453)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH--HHHHHHHH------------------------------HHHH
Confidence            368899999665554    46677899999996 74  35788888                              5667


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      ..+...+..+++.++    ||++|+||+|++++..+.+..++..++++..++...+.+++..+|+.|+|+.+.+.+|+++
T Consensus        58 ~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i  137 (453)
T PRK09575         58 IGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQV  137 (453)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Confidence            777777766666554    9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS  257 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG~  257 (257)
                      ..++.++..+.....+++|+.||++.++..++++. ++++|+++++.+.+++|.
T Consensus       138 ~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~li~~~~~Gi  190 (453)
T PRK09575        138 LIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGA-LINIVLDYLFIGWLDWGL  190 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH-HHHHHhhHHHHHhCCchh
Confidence            99999999999999999999999999999999996 899999999999888773

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.73  E-value=5e-16  Score=148.34  Aligned_cols=168  Identities=13%  Similarity=0.087  Sum_probs=147.6

Q ss_pred             hhHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTLIL----EIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~~l----e~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +.+|+++++++|..+    +.....+|+.+++++|+.  +++++++                              ..++
T Consensus         9 ~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~--~laa~~~------------------------------~~~~   56 (456)
T PRK01766          9 SEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSAT--DLAAVAI------------------------------GTSI   56 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHH------------------------------HHHH
Confidence            447889999955544    455567789999999854  5788888                              5566


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      ......+..|++.+.    ||++|++|+|++|+..+.+..+++.++++..++.+++++++.++|+.|+|+.+.+.+|+++
T Consensus        57 ~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i  136 (456)
T PRK01766         57 WLPVILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHA  136 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            666667777777665    9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK  252 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~  252 (257)
                      .+++.++..+..++.+++||.||++.+++.++++. ++++++++++.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~-ivni~l~~~li~~  184 (456)
T PRK01766        137 LLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGL-LINIPLNYIFIYG  184 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            99999999999999999999999999999999997 7899999998864

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.58  E-value=2.1e-13  Score=124.16  Aligned_cols=161  Identities=18%  Similarity=0.213  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 037649           63 TLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAA  142 (257)
Q Consensus        63 ~~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~gls~a~  142 (257)
                      ....+.....+++.+.+++|+.  +++++++                              +.++..+...+..|++.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~------------------------------a~~i~~~~~~~~~~i~~~~   52 (342)
T TIGR00797         5 ANILQPLLGLVDTAFVGHLGPV--DLAAVSL------------------------------GSSVFMFLFSILMGLGTAT   52 (342)
T ss_pred             HHHHHHHHHHHHHHHHhcccHH--HHHHHHH------------------------------hHHHHHHHHHHHHHHHHhH
Confidence            4455566677899999999954  4678787                              6677777888888888887


Q ss_pred             ----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649          143 ----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILS  218 (257)
Q Consensus       143 ----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~  218 (257)
                          ++++|++|+|++++..+.+......++++.+++.+.+++++..+|+.|+|..+.+.+++++.+++.++.+++.+..
T Consensus        53 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~  132 (342)
T TIGR00797        53 TALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLR  132 (342)
T ss_pred             HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                9999999999999999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             HHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHh-hcC-CC
Q 037649          219 GVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF-KTS-LD  256 (257)
Q Consensus       219 gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~-~~~-lG  256 (257)
                      +++||.||.+.+++.++++. ++.++.++++.+ .++ +|
T Consensus       133 ~~l~~~~~~~~~~~~~i~~~-~~~i~~~~~li~~~~g~~g  171 (342)
T TIGR00797       133 GFLRGQGDTKTPMYITLIGN-VINIILNYILIFGKFGFLG  171 (342)
T ss_pred             HHHHhcCCchHHHHHHHHHH-HHHHHHhHHHHhcCccccc
Confidence            99999999999999999887 789999998887 566 54

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.56  E-value=4.8e-13  Score=128.31  Aligned_cols=170  Identities=9%  Similarity=0.044  Sum_probs=140.3

Q ss_pred             hhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTLI----LEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~~----le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +.+|++++.+.+..    .+.....++..+.+.+|+.  ++++++.                              +.++
T Consensus       220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~--~v~~~~~------------------------------a~~l  267 (502)
T TIGR01695       220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG--SVSALYY------------------------------ANRI  267 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHH------------------------------HHHH
Confidence            34688999886555    4455566777776667754  3566666                              5555


Q ss_pred             HHHHHH-HHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC----CHHHHHHHH
Q 037649          128 LNWDIN-VMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFAS----DSEVVQAVS  198 (257)
Q Consensus       128 ~~~~~~-~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~----d~~v~~~~~  198 (257)
                      ..+... +..+++.+.    ||+.|++|+|++|+..+.+......++...++.+..+++++..+|.+    |+|..+.+.
T Consensus       268 ~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~  347 (502)
T TIGR01695       268 YQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTA  347 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            555443 445666665    99999999999999999999999999999999999999999998865    678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649          199 NLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS  254 (257)
Q Consensus       199 ~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~  254 (257)
                      +++++.++..++.+++.+..+++++.||++.+++.++++. ++++|+++++...+|
T Consensus       348 ~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~~~~G  402 (502)
T TIGR01695       348 TILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALLSLLLIFPLG  402 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999987 789999999876554

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.38  E-value=6.9e-11  Score=112.87  Aligned_cols=168  Identities=15%  Similarity=0.120  Sum_probs=128.5

Q ss_pred             hhHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCch-----hhhhhheeecccccchhhhhhccchhhHHHHHHHHhHh
Q 037649           52 VSIFNYMLTFVTLILE----IWFNQGLAPISGLLPNP-----TILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFIN  122 (257)
Q Consensus        52 ~~~~~~l~l~~~~~le----~~~~~i~~~~~g~lg~~-----~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  122 (257)
                      +.+|++++.+.+..++    .....+|+.+.++...+     +.+.+.++.                  ++        +
T Consensus       222 ~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~------------------~~--------~  275 (488)
T TIGR02900       222 ALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGK------------------LS--------G  275 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH------------------HH--------C
Confidence            4578899999666554    44456777777753211     111122221                  00        0


Q ss_pred             hHHHHHHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHH
Q 037649          123 FIMNYLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVS  198 (257)
Q Consensus       123 ~~~~~~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~  198 (257)
                      ...++..+...+..+++.+.    +++.|++|+|++|+..+....++..++....+.+..+++++..+|.++++    +.
T Consensus       276 ~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~  351 (488)
T TIGR02900       276 MAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AG  351 (488)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hH
Confidence            02344445555566666665    99999999999999999999999999999999999999999998876654    46


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHH
Q 037649          199 NLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLG  250 (257)
Q Consensus       199 ~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~  250 (257)
                      +++++.++..+++.++....+++++.||+|.+++.+.++. ++++|+.+++.
T Consensus       352 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~  402 (488)
T TIGR02900       352 NFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLT  402 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHH
Confidence            7899999999999999999999999999999999999998 79999999887

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.31  E-value=5e-11  Score=108.57  Aligned_cols=121  Identities=21%  Similarity=0.256  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +.+|++++.+.|.    ..+.....++..+.+++|++  +++++++                              ..++
T Consensus       213 ~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~--~v~~~~~------------------------------a~~~  260 (342)
T TIGR00797       213 EVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSI--ALAAHQI------------------------------ALNV  260 (342)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHH------------------------------HHHH
Confidence            4578899999444    44555567778888888854  4678888                              5677


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      .++...+..+++.+.    ++++|++|.|++|+..+.+......+++...+.+.++++++.++|++|||+.+.+..++++
T Consensus       261 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  340 (342)
T TIGR00797       261 ESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIF  340 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            777788888888877    9999999999999999999999999999999999999999999999999999999999987


Q ss_pred             H
Q 037649          204 L  204 (257)
Q Consensus       204 ~  204 (257)
                      .
T Consensus       341 ~  341 (342)
T TIGR00797       341 V  341 (342)
T ss_pred             h
Confidence            5

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK15099 O-antigen translocase; Provisional

Probab=99.11  E-value=1e-08  Score=96.91  Aligned_cols=163  Identities=6%  Similarity=-0.099  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHHHHHHH----HHHHHHHHh-cCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           53 SIFNYMLTFVTLILEIWF----NQGLAPISG-LLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        53 ~~~~~l~l~~~~~le~~~----~~i~~~~~g-~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      .+|++++.|.+...+...    ...+..+.+ .+|+.  +++.+++                              +.++
T Consensus       213 ~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~--~vg~y~~------------------------------a~~i  260 (416)
T PRK15099        213 LAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWD--EVGIWQG------------------------------VSSI  260 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HhhHHHH------------------------------HHHH
Confidence            368899999776555433    445556665 67743  5788877                              6677


Q ss_pred             HH-HHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCH-HHHHHHHHHH
Q 037649          128 LN-WDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDS-EVVQAVSNLI  201 (257)
Q Consensus       128 ~~-~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~-~v~~~~~~~l  201 (257)
                      .. +...+..+++++.    +++   +|+||+++..+........++...++..+++++++.++|.+|+ +-   +.+++
T Consensus       261 ~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~---~~~~~  334 (416)
T PRK15099        261 SDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTA---MRDLF  334 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH---HHHHH
Confidence            55 4577888888887    764   7889999999999999999999999988999999999998765 31   45577


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649          202 PSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS  254 (257)
Q Consensus       202 ~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~  254 (257)
                      ++.++..++..........+-..++++..+...+.. .++.+|+.+++...+|
T Consensus       335 ~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~~G  386 (416)
T PRK15099        335 AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPLHG  386 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence            777777777666665555555666777666666554 4889999999887654

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=98.88  E-value=5.5e-08  Score=95.14  Aligned_cols=171  Identities=14%  Similarity=0.131  Sum_probs=144.4

Q ss_pred             hhHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVT----LILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~----~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      ++.|++.+++.|    ...+.....+...+.|++|+.+  +|+.++                              ..+.
T Consensus        25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~le--Laa~sl------------------------------a~s~   72 (473)
T KOG1347|consen   25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLE--LASVSL------------------------------ANSF   72 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchH--HHHHHH------------------------------HHHh
Confidence            446778888844    4556666777889999999765  677676                              2222


Q ss_pred             -HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHH
Q 037649          128 -LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIP  202 (257)
Q Consensus       128 -~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~  202 (257)
                       ....+.+..|++.+.    ||++|+++++......+.+...-...++..+.+ +.+.+++...++.|+++...+..|.+
T Consensus        73 ~n~~~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~  151 (473)
T KOG1347|consen   73 ANITGVSILLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAF  151 (473)
T ss_pred             hcccchHHhhccchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHh
Confidence             224566777787777    999999999999999999998888888877665 56669999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCC
Q 037649          203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLD  256 (257)
Q Consensus       203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG  256 (257)
                      +..+..+.......++..++++++.....++..++. ++++|+.|++.+++++|
T Consensus       152 ~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~-~lhi~~~~llv~~~~~g  204 (473)
T KOG1347|consen  152 MLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVAL-VLHILLTWLLVSKLGLG  204 (473)
T ss_pred             hhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHH-HHHHHHHHHhhhcccCC
Confidence            999999999999999999999999999999999998 89999999999999987

>TIGR01695 mviN integral membrane protein MviN

Probab=98.87  E-value=2e-07  Score=89.44  Aligned_cols=157  Identities=10%  Similarity=0.043  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhhh-hheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHH
Q 037649           55 FNYMLTFVTLILEIWFNQGLAPISGL-LPNPTILL-DSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDI  132 (257)
Q Consensus        55 ~~~l~l~~~~~le~~~~~i~~~~~g~-lg~~~~al-aa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  132 (257)
                      |+..-+.+...++.....++..+.++ +|+++  . +++++                              +.++..+..
T Consensus         4 k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~--~~~~~~~------------------------------~~~i~~~~~   51 (502)
T TIGR01695         4 KSTLIVSLGTLFSRITGFVRDAIIASAFGAGL--TADAFNV------------------------------AFVIPNFFR   51 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--HhhHHHH------------------------------HHHHHHHHH
Confidence            44444456667777777788889898 78654  4 67777                              444444444


Q ss_pred             HHHH--HHHHHH-HHHhccCCh-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhccccc--CCCHHHHHHHHHHHHHHH
Q 037649          133 NVML--GLSAAA-SNELGAAHP-KAAKFSVLVVNANSIFISV-VFSAVVLIFRADLSKPF--ASDSEVVQAVSNLIPSLA  205 (257)
Q Consensus       133 ~~~~--gls~a~-g~~lGa~~~-~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~F--t~d~~v~~~~~~~l~i~~  205 (257)
                      ....  |++.+. .+..|+++. |++++....+.......+. ...++.+++.+++.+++  +.|+|+.+.+.+|+++.+
T Consensus        52 ~~~~~~g~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~  131 (502)
T TIGR01695        52 RLFAEGAFNSAFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMF  131 (502)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            4333  566666 777777666 5888777776666554444 45677888899999988  457888899999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHH
Q 037649          206 ISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLP  244 (257)
Q Consensus       206 ~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lP  244 (257)
                      ++.++..+..+.++++||.||.+.+++.+++.. ++.+.
T Consensus       132 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-i~~i~  169 (502)
T TIGR01695       132 PYLLLISLAAVFGGILNARKRFFIPSFSPILFN-IGVIL  169 (502)
T ss_pred             HHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHH-HHHHH
Confidence            999999999999999999999999999999887 34444

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=98.85  E-value=2.2e-07  Score=88.79  Aligned_cols=148  Identities=13%  Similarity=0.121  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHhc-CCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHHHH-HHHH
Q 037649           62 VTLILEIWFNQGLAPISGL-LPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVM-LGLS  139 (257)
Q Consensus        62 ~~~~le~~~~~i~~~~~g~-lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~gls  139 (257)
                      +....+.....+++++.++ +|+++  .++++.                              ..++..+...+. .|++
T Consensus        10 ~~~~~~~~~~~i~~~~l~r~Lg~~~--~G~~~~------------------------------~~~~~~~~~~~~~~Gl~   57 (488)
T TIGR02900        10 IANLITRILGFIFRIVLSRILGAEG--VGLYGM------------------------------AMPIYFLFITLTTGGLP   57 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHH--hhHHHH------------------------------HHHHHHHHHHHHhCCcH
Confidence            5556666666778888888 57543  566666                              444555544443 4677


Q ss_pred             HHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649          140 AAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQP  215 (257)
Q Consensus       140 ~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~  215 (257)
                      .+.    +++.|++|+|++++..+.+..+.+..+++..++.+++.+.+...+.+|++..    .++++.++..++..+..
T Consensus        58 ~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~  133 (488)
T TIGR02900        58 VAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSS  133 (488)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHH
Confidence            666    8889999999999999999999999999999999999999887776776643    46777888888999999


Q ss_pred             HHHHHhHhcCchhHHHHHHHHHHHHhHHHHH
Q 037649          216 ILSGVAIGSGWQAIVAYVNLACYYIMGLPMG  246 (257)
Q Consensus       216 ~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~  246 (257)
                      +.++.+||.+|.+..+..+.+.. ++++++.
T Consensus       134 ~~~~~l~~~~~~~~~~~~~~i~~-i~~~~~~  163 (488)
T TIGR02900       134 VLKGYFQGISNMKPPAYIQVIEQ-IVRISVV  163 (488)
T ss_pred             HHHHHHhhhccchHhHHHHHHHH-HHHHHHH
Confidence            99999999999999999888776 4554443

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.79  E-value=9.4e-07  Score=85.54  Aligned_cols=170  Identities=9%  Similarity=0.079  Sum_probs=134.2

Q ss_pred             hhHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTLILEI----WFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~~le~----~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      ++.|++++...+..+..    ....++..++..++++.  +++.+-                              +.++
T Consensus       195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~--vs~l~Y------------------------------A~~l  242 (451)
T PF03023_consen  195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGS--VSALNY------------------------------AQRL  242 (451)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHHHH------------------------------HHHH
Confidence            34677877774444433    33445667777788664  344333                              5555


Q ss_pred             HHHHHH-HHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC----CCHHHHHHHH
Q 037649          128 LNWDIN-VMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFA----SDSEVVQAVS  198 (257)
Q Consensus       128 ~~~~~~-~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft----~d~~v~~~~~  198 (257)
                      .++... +..+++.+.    ++..-++|.++.|+..+.++.....+.+..++.++.+++++.++.=    -|+|-.+...
T Consensus       243 ~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta  322 (451)
T PF03023_consen  243 YQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTA  322 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHH
Confidence            555443 344666665    9999999999999999999999999999999999999999887652    3777789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649          199 NLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS  254 (257)
Q Consensus       199 ~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~  254 (257)
                      +.+.+++++.++.+++..+..++.+.+|+|.++..+.++. ++++.+++++...+|
T Consensus       323 ~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~~g  377 (451)
T PF03023_consen  323 SALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPFFG  377 (451)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888 788988877776554

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.40  E-value=4e-05  Score=75.86  Aligned_cols=112  Identities=10%  Similarity=0.024  Sum_probs=101.4

Q ss_pred             HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc-C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649          143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPF-A---SDSEVVQAVSNLIPSLAISVFLNGIQPILS  218 (257)
Q Consensus       143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~F-t---~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~  218 (257)
                      +++..++|.+++++..+.++.++..+++..++.+.++.+++.+.. .   -+++-.+...+.+..++.+.++.....++.
T Consensus       297 Sr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~  376 (518)
T COG0728         297 SRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLS  376 (518)
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998764 2   256777888899999999999999999999


Q ss_pred             HHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCC
Q 037649          219 GVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSL  255 (257)
Q Consensus       219 gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~l  255 (257)
                      -++.+.+|+|.|+.+.+++. ++++-+++.+...++.
T Consensus       377 ~~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l~~~~~~  412 (518)
T COG0728         377 RVFYAREDTKTPMKIAIISL-VVNILLNLLLIPPLGH  412 (518)
T ss_pred             HHHHHccCCCcChHHHHHHH-HHHHHHHHHHHhhccc
Confidence            99999999999999999998 7889888777666654

>PRK15099 O-antigen translocase; Provisional

Probab=98.39  E-value=1.4e-05  Score=75.55  Aligned_cols=109  Identities=15%  Similarity=0.141  Sum_probs=85.8

Q ss_pred             HHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Q 037649          135 MLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFL  210 (257)
Q Consensus       135 ~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~  210 (257)
                      ..|++.+.    +++  ++|+|++++....+..+.+..+++.+++.+++.+++...+.+|+|.    ..++.+..+..+.
T Consensus        55 ~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~  128 (416)
T PRK15099         55 GAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMG  128 (416)
T ss_pred             cCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHH
Confidence            44554444    666  7899999999999999999999999999999999999888777752    2445555555556


Q ss_pred             HHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHh
Q 037649          211 NGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF  251 (257)
Q Consensus       211 ~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~  251 (257)
                      ..+....++++||.||++.++..++.+. ++++.+ +++.+
T Consensus       129 ~~~~~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~  167 (416)
T PRK15099        129 IAWANLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCY  167 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHH
Confidence            6778889999999999999999998887 666665 44443

>PRK10459 colanic acid exporter; Provisional

Probab=98.29  E-value=8.4e-05  Score=71.66  Aligned_cols=163  Identities=9%  Similarity=0.014  Sum_probs=112.4

Q ss_pred             hHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHH
Q 037649           53 SIFNYMLTFVTLIL----EIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYL  128 (257)
Q Consensus        53 ~~~~~l~l~~~~~l----e~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  128 (257)
                      .+|++++.+.+...    .....++|.++.|+.-.++ +++.++.                              +.++.
T Consensus       205 ~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~-~vG~Y~~------------------------------A~~l~  253 (492)
T PRK10459        205 SVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAE-VLGGYNL------------------------------AYNVA  253 (492)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchH-hhhhHHH------------------------------HHHHH
Confidence            46788888854444    3455677888888754332 3555555                              23333


Q ss_pred             HHHHHHH-HHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          129 NWDINVM-LGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       129 ~~~~~~~-~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      +...... ..++...    ++.  ++|+++.|+..+........+++...+.+..+.+++..++-.|+  .+.+...+.+
T Consensus       254 ~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~i  329 (492)
T PRK10459        254 TVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQL  329 (492)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHH
Confidence            2221111 1122222    443  67888999999999998888888888888888888876654332  3556788899


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHh
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF  251 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~  251 (257)
                      .++..++..+......++.+.||+|..+..+++.. ++.+|..+.+..
T Consensus       330 l~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~  376 (492)
T PRK10459        330 LCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQ  376 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHh
Confidence            99888888888888899999999999999998776 677787665554

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.26  E-value=0.00016  Score=69.24  Aligned_cols=168  Identities=15%  Similarity=0.137  Sum_probs=129.0

Q ss_pred             hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +.++++++.+.+.    .......++|.++.|+.-.++ .++-++.                              ..++
T Consensus       210 ~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~-~vG~Y~~------------------------------a~~i  258 (480)
T COG2244         210 ALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPA-QVGIYSA------------------------------AQRL  258 (480)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-Hheeccc------------------------------ccHH
Confidence            4467788888444    444556778999888753322 3555554                              4556


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc-CCCHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPF-ASDSEVVQAVSNLIP  202 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~F-t~d~~v~~~~~~~l~  202 (257)
                      ......+...++.+.    ++...++|.++.++..+........+++...+....+.+++..++ +++.+.   +...+.
T Consensus       259 ~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~---~~~~l~  335 (480)
T COG2244         259 VSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS---AAPILQ  335 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc---hhHHHH
Confidence            666666666777666    999999999999999999999999999999999999988777765 444432   677788


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649          203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS  254 (257)
Q Consensus       203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~  254 (257)
                      +.++...+..........+.+.|+++..++.+.++. ++++.+.+++....+
T Consensus       336 il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~~~g  386 (480)
T COG2244         336 LLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLIPRFG  386 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHHhhh
Confidence            888888899999999999999999999999999887 677777777765443

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=97.79  E-value=0.0012  Score=63.92  Aligned_cols=114  Identities=19%  Similarity=0.219  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHH--HHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC--CCHHHHH
Q 037649          124 IMNYLNWDINVML--GLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFA--SDSEVVQ  195 (257)
Q Consensus       124 ~~~~~~~~~~~~~--gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft--~d~~v~~  195 (257)
                      +.++-.+......  +++.+.    .+.. ++++|++++..+.........+..++++.+++.+++.+++.  .|+|..+
T Consensus        17 A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~   95 (451)
T PF03023_consen   17 AFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIE   95 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHH
Confidence            4555555554443  244444    6676 88999999999999999999999999999999999999985  5789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHH
Q 037649          196 AVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACY  238 (257)
Q Consensus       196 ~~~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~  238 (257)
                      .+.+++++..+..++.++..+..+++++.+|-..+....++-.
T Consensus        96 la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N  138 (451)
T PF03023_consen   96 LAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFN  138 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            9999999999999999999999999999999998887776654

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=94.88  E-value=3.3  Score=41.46  Aligned_cols=151  Identities=14%  Similarity=0.075  Sum_probs=105.5

Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHH
Q 037649           55 FNYMLTF-VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDIN  133 (257)
Q Consensus        55 ~~~l~l~-~~~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  133 (257)
                      |+...++ .+++.-...+.=+.+++..+|.+. ..+|..+                              +.++=++.--
T Consensus        11 ks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~-~aDAF~v------------------------------Af~iPN~lRr   59 (518)
T COG0728          11 KSLIIVSSATLLSRILGFVRDVLIAAAFGAGA-AADAFFV------------------------------AFKLPNLLRR   59 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-HHHHHHH------------------------------HHHhHHHHHH
Confidence            4444444 344444455555778888888754 3577777                              4444444443


Q ss_pred             HHHH--HHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccCC--CHHHHHHHHHHHHHH
Q 037649          134 VMLG--LSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLS-KPFAS--DSEVVQAVSNLIPSL  204 (257)
Q Consensus       134 ~~~g--ls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~-~~Ft~--d~~v~~~~~~~l~i~  204 (257)
                      ..-+  ++++-    .++..+++.|++++...........+.+...++..++.+.+. .++..  |++....+....++.
T Consensus        60 lfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~  139 (518)
T COG0728          60 LFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRIL  139 (518)
T ss_pred             HHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Confidence            3322  23333    778877878888888888886777777777888888888888 55554  344444788999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhcCchhHHHHHHHH
Q 037649          205 AISVFLNGIQPILSGVAIGSGWQAIVAYVNLA  236 (257)
Q Consensus       205 ~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~  236 (257)
                      .++.++.++.....++++..++-..+...-..
T Consensus       140 ~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl  171 (518)
T COG0728         140 FPYLLFISLSALFGAILNSRNRFFIPAFAPVL  171 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhccCeechhhhhHHH
Confidence            99999999999999999999998876554433

>PRK10459 colanic acid exporter; Provisional

Probab=94.03  E-value=2.9  Score=40.26  Aligned_cols=104  Identities=11%  Similarity=0.195  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649          135 MLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQ  214 (257)
Q Consensus       135 ~~gls~a~g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~  214 (257)
                      -.|++.+..|+   +|  +.++............+.+..++.+.+.+.+...|.+ |+.    ...+++.++..++..+.
T Consensus        59 ~~Gl~~aii~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~~~~~~~~~~~~~~  128 (492)
T PRK10459         59 DMGIGASIIQR---QD--ISHLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN-PEL----APLIKTLSLAFVIIPIG  128 (492)
T ss_pred             HcCHHHHHHhc---cc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hhh----HHHHHHHHHHHHHHHHh
Confidence            35666666442   11  1122334445566666766677777777777766654 443    34567777777777888


Q ss_pred             HHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHH
Q 037649          215 PILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLL  249 (257)
Q Consensus       215 ~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll  249 (257)
                      ....+.+++..+.+.....+.... +.+...+..+
T Consensus       129 ~~~~~~l~r~~~f~~~a~~~~~~~-i~~~~~~i~~  162 (492)
T PRK10459        129 QQFRALLQKELEFNKLAKIEISAV-VAGFTFAVVS  162 (492)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHH
Confidence            888999999988887777776665 3444444433

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=93.58  E-value=0.25  Score=39.36  Aligned_cols=54  Identities=15%  Similarity=0.221  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCC
Q 037649          201 IPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSL  255 (257)
Q Consensus       201 l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~l  255 (257)
                      +.+.+++.++.+++...+.++++.||++..+..++++. ++++++.+.+...+|.
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~~~G~   55 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIPRFGI   55 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            56788899999999999999999999999999999998 8999999999765543

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=93.54  E-value=4.3  Score=34.74  Aligned_cols=106  Identities=18%  Similarity=0.174  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHH
Q 037649          124 IMNYLNWDINV-MLGLSAAASNELGAAHP--KAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNL  200 (257)
Q Consensus       124 ~~~~~~~~~~~-~~gls~a~g~~lGa~~~--~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~  200 (257)
                      ..++.++...+ -.|++.+.-++..+.+.  ++.+.............+++...+..+..     .+.++ +....   +
T Consensus        41 ~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~-~~~~~---~  111 (273)
T PF01943_consen   41 ALSIVSLLSILADLGLSQAIVRFIAEYKDKKELRSAYFSSVLFLLLIFSLIFLLILLIAS-----FFGNP-SLSLI---L  111 (273)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCc-hHHHH---H
Confidence            34444444443 57788877655555544  33444444444333333333333333222     33333 22211   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHH
Q 037649          201 IPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACY  238 (257)
Q Consensus       201 l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~  238 (257)
                      ........++........+.+++.++.+.....++...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (273)
T PF01943_consen  112 IILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS  149 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122222567777888999999998888877777765

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=93.49  E-value=4.3  Score=34.58  Aligned_cols=104  Identities=15%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          125 MNYLNWDINV-MLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       125 ~~~~~~~~~~-~~gls~a~g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      ..+..+...+ -.|+....-++ .++++++.++..+.........+++...+......    .+ ++++..    .++..
T Consensus        27 ~s~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~----~~~~~   96 (251)
T PF13440_consen   27 FSIVSILSIVASLGLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAILAILIAY----FF-GDPELF----WLLLL   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-CChhHH----HHHHH
Confidence            3444444443 45666555443 34667777777777766656555554444322222    33 344332    34455


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHH
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACY  238 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~  238 (257)
                      .++..+....+...++.+++.+|.+.....+....
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  131 (251)
T PF13440_consen   97 LALAIFFSALSQLFRSILRARGRFRAYALIDIVRS  131 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            66677788888999999999999999888877765

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=93.14  E-value=7.4  Score=36.89  Aligned_cols=44  Identities=16%  Similarity=0.184  Sum_probs=38.2

Q ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCchh
Q 037649          185 KPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQA  228 (257)
Q Consensus       185 ~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~  228 (257)
                      +.|.-||++.+.+...+.++.+..+++++....+|++.=.-++.
T Consensus       116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~  159 (345)
T PF07260_consen  116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW  159 (345)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence            56788999999999999999999999999999999988444333

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=87.38  E-value=27  Score=33.26  Aligned_cols=101  Identities=17%  Similarity=0.254  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhccCChHH----HHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHH
Q 037649          124 IMNYLNWDINVM-LGLSAAASNELGAAHPKA----AKFS-VLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAV  197 (257)
Q Consensus       124 ~~~~~~~~~~~~-~gls~a~g~~lGa~~~~~----a~~~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~  197 (257)
                      ...+..+...+. .|+..+..++..+.+.++    .+.. ...........+.+...........       |    +..
T Consensus        48 ~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~----~~~  116 (480)
T COG2244          48 ALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------D----PVL  116 (480)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------C----hhh
Confidence            444555555544 778888755555444443    3333 3333333333333333333222221       2    223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHH
Q 037649          198 SNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNL  235 (257)
Q Consensus       198 ~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l  235 (257)
                      ...+.................+.+|+.++.+.......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (480)
T COG2244         117 ALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIV  154 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence            34455677777888888899999999999887776633

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=87.16  E-value=14  Score=37.23  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHH
Q 037649          152 KAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVA  231 (257)
Q Consensus       152 ~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~  231 (257)
                      +++.+.....+.....+++++.....-..+.+..+...+.=.-..+.+.++.++...++.+++.+..+.+.+..+++...
T Consensus       339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~  418 (549)
T PF04506_consen  339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLD  418 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHH
Confidence            44555566666666777766666666666666666643222222236778889999999999999999999999888654


Q ss_pred             HHHHH--HHHHhHHHHHHHHHhhcCCC
Q 037649          232 YVNLA--CYYIMGLPMGCLLGFKTSLD  256 (257)
Q Consensus       232 ~i~l~--~~~~i~lPl~~ll~~~~~lG  256 (257)
                      .-|-.  ..-++-+-.+|++..+ ++|
T Consensus       419 ~~~~~m~~~S~~f~~~~~~l~~~-~~G  444 (549)
T PF04506_consen  419 RYNYWMVVFSAIFLAASYLLTRW-GLG  444 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cCC
Confidence            43322  2223444566766665 454

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	2e-16

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 134 VMLGLSAAAS----NELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFAS 189
             + + AA S    ++LG    K A  +  V     +  + + + + ++FR  ++  +  
Sbjct: 289 FPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE 348

Query: 190 DSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLL 249
           +  VV     L+   AI   ++ +Q + +G   G      + +     Y+++GLP G +L
Sbjct: 349 NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYIL 408

Query: 250 GF 251
           G 
Sbjct: 409 GM 410

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.82
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.51

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.82  E-value=8.5e-20  Score=169.55  Aligned_cols=168  Identities=17%  Similarity=0.285  Sum_probs=154.5

Q ss_pred             hHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHH
Q 037649           53 SIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYL  128 (257)
Q Consensus        53 ~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  128 (257)
                      .+|++++.+.+.    ..+...+.+++.+.+++|+.  +++++++                              ..++.
T Consensus       236 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i------------------------------~~~i~  283 (460)
T 3mkt_A          236 ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQV------------------------------ALNFS  283 (460)
T ss_dssp             STTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHH------------------------------HHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHH------------------------------HHHHH
Confidence            457788888444    45677788889999999754  5788888                              78899


Q ss_pred             HHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHH
Q 037649          129 NWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSL  204 (257)
Q Consensus       129 ~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~  204 (257)
                      ++...+..+++.+.    |+++|++|+|++|+..+.+...+..+++..++++.++++++..+|++|+|+.+.+.+++++.
T Consensus       284 ~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~  363 (460)
T 3mkt_A          284 SLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA  363 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            99999999999888    99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 037649          205 AISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK  252 (257)
Q Consensus       205 ~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~  252 (257)
                      +++.++++++.+..++++|.||++.+++.++++.|++++|+++++...
T Consensus       364 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~  411 (460)
T 3mkt_A          364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMT  411 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999987

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.51  E-value=1.5e-13  Score=127.45  Aligned_cols=167  Identities=13%  Similarity=0.092  Sum_probs=144.4

Q ss_pred             hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649           52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY  127 (257)
Q Consensus        52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  127 (257)
                      +..|++++.+++.    ..+.....+++.+++++|+.  +++++++                              ..++
T Consensus         9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~--~~~~~~~------------------------------~~~i   56 (460)
T 3mkt_A            9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAI--DMAAVSI------------------------------AASI   56 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT--TSSHHHH------------------------------HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHH------------------------------HHHH
Confidence            4568888888544    45555667788999999854  4677777                              5666


Q ss_pred             HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649          128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS  203 (257)
Q Consensus       128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i  203 (257)
                      ..+...+..|++.+.    ++++|++|+|++++..+.+......++++..++ +++.+++..+++.|+|+.+.+.+|+++
T Consensus        57 ~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i  135 (460)
T 3mkt_A           57 WLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHA  135 (460)
T ss_dssp             HHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            667677778888777    999999999999999999999999999987765 788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 037649          204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK  252 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~  252 (257)
                      .+++.++..+....++++||.||++.+++.++++. ++++++++++.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l~~~li~~  183 (460)
T 3mkt_A          136 VIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGL-LLNIPLNWIFVYG  183 (460)
T ss_dssp             GGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHH-HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            99999999999999999999999999999999988 7899999998875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00