Citrus Sinensis ID: 037652

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MPLISPSHTVHSLSPPFNSSSHDAKVQKRSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIKSEKASSRSSSHTEKTSPSFHPQTSPAVSQGSNLELSDSFEDLPNTQIRKAIARRLLELKQTAPHLYLSSKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI
cccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccEEEHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHccccEEEEEEEcccccEEHHHHHHHHHHHHHHHccccccccccccccEEEcccccEEEEEEccccEEEccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccEEEcccccccEEEEcccccEEEEEEccccccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHcccc
cccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHccccccccEEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEHHHccccccHHHHHHHHHHHHHHHcHHHcEEEccccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHccccHHHccccEEEEEcccccccccccccccccHHHEEEHHHHcccccEEEEcccEEEEEcHHHEEEccccEEEcHHHHHHHHHHHHHHHHcc
mplispshtvhslsppfnssshdakvqkrsftkispsakllipehgldasslqasgpygtllkGDVLAAIKsekassrssshtektspsfhpqtspavsqgsnlelsdsfedlpNTQIRKAIARRLLELKQtaphlylsskkhnikvSVNDIVIKAVAVALKNvpeansywnvetEEIVLFDAIDISIAVATEkglmtpivrnadqKSISAISMEVKELAERagklaphefqggtfsisnlgmfpvdqfcaIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI
mplispshtvhslsppfnssshdAKVQKRSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIKSEkassrssshtektspsfhpqtspaVSQGSNLELSDSFEDLPNTQIRKAIARRLLELKQTAPHlylsskkhnikvSVNDIVIKAVAVALKnvpeansywNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSAlcsnfrdi
MPLISPSHTVHSLSPPFNSSSHDAKVQKRSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIksekassrssshtektspsFHPQTSPAVSQGSNLELSDSFEDLPNTQIRKAIARRLLELKQTAPHLYLSSKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI
*********************************************************YGTLLKGDVL**************************************************IRKAIARRLLELKQTAPHLYLSSKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQ**ISAISM*V**L***AGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNF***
************************************SAKLLIPEHGLDASSLQASGPYGTLLKGDVLA*******************************************DLPNTQIRKAIARRLLELKQTAPHLYLSSKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI
*****************************SFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIK*******************************NLELSDSFEDLPNTQIRKAIARRLLELKQTAPHLYLSSKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI
**********************************SP*AKL****HGLDASSLQASGPYGTLLKGDVLAAIKS****************************************LPNTQIRKAIARRLLELKQTAPHLYLSSKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI
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MPLISPSHTVHSLSPPFNSSSHDAKVQKRSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIKSEKASSRSSSHTEKTSPSFHPQTSPAVSQGSNLELSDSFEDLPNTQIRKAIARRLLELKQTAPHLYLSSKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
Q0WQF7637 Dihydrolipoyllysine-resid yes no 0.914 0.453 0.635 1e-100
O00330501 Pyruvate dehydrogenase pr no no 0.889 0.560 0.363 2e-47
Q1RJT3418 Dihydrolipoyllysine-resid yes no 0.784 0.593 0.405 2e-47
Q8BKZ9501 Pyruvate dehydrogenase pr yes no 0.889 0.560 0.363 8e-47
Q92HK7412 Dihydrolipoyllysine-resid yes no 0.778 0.597 0.398 1e-46
Q4ULG1412 Dihydrolipoyllysine-resid yes no 0.772 0.592 0.395 2e-46
Q9R9N3447 Dihydrolipoyllysine-resid yes no 0.857 0.606 0.379 4e-46
Q68WK6404 Dihydrolipoyllysine-resid yes no 0.819 0.641 0.374 7e-46
Q86AD5413 Pyruvate dehydrogenase co yes no 0.743 0.569 0.413 2e-45
Q9ZD20408 Dihydrolipoyllysine-resid yes no 0.778 0.602 0.381 3e-45
>sp|Q0WQF7|OPD21_ARATH Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2 Back     alignment and function desciption
 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/310 (63%), Positives = 242/310 (78%), Gaps = 21/310 (6%)

Query: 27  QKRSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIKSEKASSRSSSHTEKT 86
           +K  FTKISP+AKLLI EHGL+ASS++ASGPYGTLLK DV+AAI S   +S+SS+ T+K 
Sbjct: 324 RKAGFTKISPAAKLLILEHGLEASSIEASGPYGTLLKSDVVAAIAS-GKASKSSASTKKK 382

Query: 87  SPSFHPQTSPAVSQGSNLELSD-SFEDLPNTQIRKAIARRLLELKQTAPHLYLSS----- 140
            PS    +  + +   ++  SD ++ED PN+QIRK IA+RLLE KQ  PHLYL S     
Sbjct: 383 QPSKETPSKSSSTSKPSVTQSDNNYEDFPNSQIRKIIAKRLLESKQKIPHLYLQSDVVLD 442

Query: 141 ----------KKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAV 190
                     + H +KVSVNDIVIKAVAVAL+NV +AN++W+ E  +IV+ D++DISIAV
Sbjct: 443 PLLAFRKELQENHGVKVSVNDIVIKAVAVALRNVRQANAFWDAEKGDIVMCDSVDISIAV 502

Query: 191 ATEKGLMTPIVRNADQKSISAISMEVKELAE--RAGKLAPHEFQGGTFSISNLGMFPVDQ 248
           ATEKGLMTPI++NADQKSISAIS+EVKELA+  R+GKLAPHEFQGGTFSISNLGM+PVD 
Sbjct: 503 ATEKGLMTPIIKNADQKSISAISLEVKELAQKARSGKLAPHEFQGGTFSISNLGMYPVDN 562

Query: 249 FCAIINTPLAGILVVGRGNQVVELVIGRN--EIPAVVTKMNLTLSADHRVFEGKVGCAFF 306
           FCAIIN P AGIL VGRGN+VVE VIG +  E P+VVTKMN+TLSADHR+F+G+VG +F 
Sbjct: 563 FCAIINPPQAGILAVGRGNKVVEPVIGLDGIEKPSVVTKMNVTLSADHRIFDGQVGASFM 622

Query: 307 SALCSNFRDI 316
           S L SNF D+
Sbjct: 623 SELRSNFEDV 632
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 2
>sp|O00330|ODPX_HUMAN Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3 Back     alignment and function description
>sp|Q1RJT3|ODP2_RICBR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1 Back     alignment and function description
>sp|Q8BKZ9|ODPX_MOUSE Pyruvate dehydrogenase protein X component, mitochondrial OS=Mus musculus GN=Pdhx PE=2 SV=1 Back     alignment and function description
>sp|Q92HK7|ODP2_RICCN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=pdhC PE=3 SV=1 Back     alignment and function description
>sp|Q4ULG1|ODP2_RICFE Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=pdhC PE=3 SV=1 Back     alignment and function description
>sp|Q9R9N3|ODP2_RHIME Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rhizobium meliloti (strain 1021) GN=pdhC PE=3 SV=1 Back     alignment and function description
>sp|Q68WK6|ODP2_RICTY Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=pdhC PE=3 SV=1 Back     alignment and function description
>sp|Q86AD5|Y1564_DICDI Pyruvate dehydrogenase complex subunit homolog DDB_G0271564, mitochondrial OS=Dictyostelium discoideum GN=pdhX PE=3 SV=1 Back     alignment and function description
>sp|Q9ZD20|ODP2_RICPR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia prowazekii (strain Madrid E) GN=pdhC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
359486892 636 PREDICTED: dihydrolipoyllysine-residue a 0.990 0.492 0.663 1e-112
296090376 659 unnamed protein product [Vitis vinifera] 0.990 0.474 0.663 1e-112
356576335 628 PREDICTED: dihydrolipoyllysine-residue a 0.993 0.5 0.632 1e-109
224100693 588 predicted protein [Populus trichocarpa] 0.943 0.506 0.629 1e-108
255571622 633 dihydrolipoamide acetyltransferase compo 0.898 0.448 0.660 1e-104
449441822 638 PREDICTED: dihydrolipoyllysine-residue a 0.908 0.449 0.672 1e-103
449493259 638 PREDICTED: dihydrolipoyllysine-residue a 0.908 0.449 0.672 1e-103
5881965 637 dihydrolipoamide S-acetyltransferase [Ar 0.914 0.453 0.638 1e-102
297816492 636 dihydrolipoamide S-acetyltransferase 3 [ 0.914 0.454 0.640 1e-102
414873479 484 TPA: hypothetical protein ZEAMMB73_64582 0.917 0.599 0.627 1e-100
>gi|359486892|ref|XP_002262782.2| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/333 (66%), Positives = 257/333 (77%), Gaps = 20/333 (6%)

Query: 4   ISPSHTVHSLSPPFNSSSHDAKVQKRSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLK 63
           +S    +    P    S ++ + +K SFT+ISPSAKLLI E GLDAS+L+ASGP GTLLK
Sbjct: 299 VSSGSDIKKEKPQQQESRNEVRAEKSSFTRISPSAKLLITEFGLDASTLKASGPRGTLLK 358

Query: 64  GDVLAAIKSEKASSRSSSHTEKTSPSFHPQTSPAVS-QGSNLELSDSFEDLPNTQIRKAI 122
           GDVLAAIK+   SS SSS  +   P  H Q SP+ S + S+L+ S+SFED+PN+QIRK I
Sbjct: 359 GDVLAAIKAGIGSSSSSSKDKMPPPPVHSQASPSASPERSHLQQSESFEDMPNSQIRKVI 418

Query: 123 ARRLLELKQTAPHLYLSS---------------KKHNIKVSVNDIVIKAVAVALKNVPEA 167
           A RLLE KQ  PHLYLSS               +KH++KVSVNDIVIKAVA+ALKNVPEA
Sbjct: 419 ATRLLESKQNTPHLYLSSDVILDPLLSFRKELKEKHDVKVSVNDIVIKAVAMALKNVPEA 478

Query: 168 NSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAE--RAGK 225
           N+YWN E  E++L D++DISIAVATEKGLMTPIVRNADQK+IS+IS+EVKELAE  RAGK
Sbjct: 479 NAYWNAEKGEVILSDSVDISIAVATEKGLMTPIVRNADQKTISSISIEVKELAEKARAGK 538

Query: 226 LAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRN--EIPAVV 283
           L P+EFQGGTFSISNLGMFPVD FCAIIN P +GIL VGRGN+VVE V+G +  E PAVV
Sbjct: 539 LKPNEFQGGTFSISNLGMFPVDHFCAIINPPQSGILAVGRGNKVVEPVVGGDGLEKPAVV 598

Query: 284 TKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI 316
           TKMNLTLSADHRVF+GKVG AF SAL SNF DI
Sbjct: 599 TKMNLTLSADHRVFDGKVGGAFLSALRSNFSDI 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296090376|emb|CBI40195.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576335|ref|XP_003556288.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|224100693|ref|XP_002311977.1| predicted protein [Populus trichocarpa] gi|222851797|gb|EEE89344.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571622|ref|XP_002526756.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis] gi|223533883|gb|EEF35610.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449441822|ref|XP_004138681.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449493259|ref|XP_004159237.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|5881965|gb|AAD55140.1|AF066080_1 dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297816492|ref|XP_002876129.1| dihydrolipoamide S-acetyltransferase 3 [Arabidopsis lyrata subsp. lyrata] gi|297321967|gb|EFH52388.1| dihydrolipoamide S-acetyltransferase 3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|414873479|tpg|DAA52036.1| TPA: hypothetical protein ZEAMMB73_645821 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
DICTYBASE|DDB_G0271564413 pdhX "putative pyruvate dehydr 0.509 0.389 0.488 1.9e-50
TIGR_CMR|ECH_0098416 ECH_0098 "pyruvate dehydrogena 0.620 0.471 0.416 8.5e-43
DICTYBASE|DDB_G0277847635 pdhC "dihydrolipoyllysine-resi 0.911 0.453 0.369 6.6e-42
UNIPROTKB|F1N690647 DLAT "Dihydrolipoyllysine-resi 0.914 0.446 0.384 6.6e-42
UNIPROTKB|E1C6N5632 DLAT "Uncharacterized protein" 0.829 0.414 0.403 3.2e-41
MGI|MGI:2385311642 Dlat "dihydrolipoamide S-acety 0.901 0.443 0.380 4.1e-41
TAIR|locus:2088247539 AT3G13930 [Arabidopsis thalian 0.506 0.296 0.445 4.4e-41
UNIPROTKB|E2RQS9647 DLAT "Uncharacterized protein" 0.810 0.395 0.412 5.9e-41
RGD|619859632 Dlat "dihydrolipoamide S-acety 0.911 0.455 0.371 7.4e-41
UNIPROTKB|F1SMB2647 DLAT "Dihydrolipoyllysine-resi 0.813 0.397 0.408 1e-40
DICTYBASE|DDB_G0271564 pdhX "putative pyruvate dehydrogenase complex, component X" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 407 (148.3 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
 Identities = 86/176 (48%), Positives = 118/176 (67%)

Query:   110 FEDLPNTQIRKAIARRLLELKQTAPHLYLS-------------SKKHNIKVSVNDIVIKA 156
             +ED+PN  IR+ IA +L + KQ  PH Y++             S   N+K+SVND V++A
Sbjct:   129 YEDIPNNNIRRVIATKLSQSKQQVPHFYMTVECELDNVLAMRKSMPENVKISVNDFVLRA 188

Query:   157 VAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEV 216
              A+AL++ P+ANS W+ E  E +L   +DIS AV+T++GL+TPI+ N D+K + AIS E 
Sbjct:   189 CALALRDNPQANSKWSDEHGEAILNPTVDISFAVSTDRGLITPIITNTDKKQLLAISNES 248

Query:   217 KELAERA--GKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVV 270
             K+LA +A  GKL P EF GGTFS+SNLGMF +  F AIIN P AGIL +G G +V+
Sbjct:   249 KQLALKARDGKLKPEEFIGGTFSVSNLGMFGITSFNAIINYPQAGILAIGTGRKVL 304
GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS
GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS
GO:0006096 "glycolysis" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0044351 "macropinocytosis" evidence=RCA
TIGR_CMR|ECH_0098 ECH_0098 "pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277847 pdhC "dihydrolipoyllysine-residue acetyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1N690 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6N5 DLAT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2385311 Dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2088247 AT3G13930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQS9 DLAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|619859 Dlat "dihydrolipoamide S-acetyltransferase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMB2 DLAT "Dihydrolipoyllysine-residue acetyltransferase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.766
3rd Layer2.3.1.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010806001
SubName- Full=Chromosome chr13 scaffold_286, whole genome shotgun sequence; (552 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019672001
RecName- Full=Dihydrolipoyl dehydrogenase; EC=1.8.1.4; (502 aa)
••••••• 0.992
GSVIVG00025274001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_33, whole genome shotg [...] (398 aa)
• • ••• 0.980
GSVIVG00006965001
SubName- Full=Chromosome chr1 scaffold_180, whole genome shotgun sequence; (334 aa)
••• ••• 0.980
GSVIVG00018004001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (334 aa)
••• ••• 0.980
GSVIVG00028924001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (398 aa)
• • ••• 0.980
GSVIVG00033119001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (566 aa)
•••  •• 0.956
GSVIVG00017898001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa)
     •• 0.918
GSVIVG00028312001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (197 aa)
  •  •  0.917
GSVIVG00003727001
RecName- Full=Citrate synthase; (472 aa)
   • •• 0.912
GSVIVG00025048001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (236 aa)
     •• 0.903

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
PRK11856411 PRK11856, PRK11856, branched-chain alpha-keto acid 6e-85
TIGR01349436 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase 2e-82
COG0508404 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena 1e-72
pfam00198212 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases 6e-66
PLN02744539 PLN02744, PLN02744, dihydrolipoyllysine-residue ac 6e-61
PRK05704407 PRK05704, PRK05704, dihydrolipoamide succinyltrans 1e-50
PRK11855547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 1e-45
TIGR01347403 TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp 1e-41
PRK14843347 PRK14843, PRK14843, dihydrolipoamide acetyltransfe 4e-39
PRK11854633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 6e-37
PTZ00144418 PTZ00144, PTZ00144, dihydrolipoamide succinyltrans 4e-34
TIGR01348546 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase 6e-33
PLN02528416 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase 2e-31
PRK11857306 PRK11857, PRK11857, dihydrolipoamide acetyltransfe 3e-31
TIGR02927579 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena 4e-28
PLN02226463 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E 7e-19
pfam0281739 pfam02817, E3_binding, e3 binding domain 9e-06
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 3e-04
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information 
 Score =  260 bits (668), Expect = 6e-85
 Identities = 113/312 (36%), Positives = 168/312 (53%), Gaps = 36/312 (11%)

Query: 14  SPPFNSSSHDAKVQKRSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIKSE 73
           +    +++        +  K SP+ + L  E G+D S+++ SGP G + K DV AA  + 
Sbjct: 107 AAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAA 166

Query: 74  KASSRSSSHTEKTSPSFHPQTSPAVSQGSNLELSDSFEDLPNTQIRKAIARRLLELKQTA 133
             ++ +++      P+                  +  E +P + +RKAIA+R++E K+  
Sbjct: 167 APAAAAAAAAAAAPPAAAA---------------EGEERVPLSGMRKAIAKRMVESKREI 211

Query: 134 PHLYLSS--------------KKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIV 179
           PH  L+               K   +K++V D +IKAVA+ALK  PE N+ W+   + IV
Sbjct: 212 PHFTLTDEVDVTALLALRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASWD--DDAIV 269

Query: 180 LFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAERA--GKLAPHEFQGGTFS 237
           L   ++I IAVAT+ GL+ P++R+AD+KS+  ++ E+K+LAE+A  GKL P E QGGTF+
Sbjct: 270 LKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFT 329

Query: 238 ISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVF 297
           ISNLGMF  D F  IIN P   IL VG   +    V+   EI  V   M L+LS DHRV 
Sbjct: 330 ISNLGMFGGDYFTPIINPPEVAILGVGAIVERP--VVVDGEI-VVRKVMPLSLSFDHRVI 386

Query: 298 EGKVGCAFFSAL 309
           +G     F  AL
Sbjct: 387 DGADAARFLKAL 398

Length = 411
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Back     alignment and domain information
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information
>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
PRK14843347 dihydrolipoamide acetyltransferase; Provisional 100.0
PRK11857306 dihydrolipoamide acetyltransferase; Reviewed 100.0
TIGR02927590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 100.0
PRK05704407 dihydrolipoamide succinyltransferase; Validated 100.0
TIGR01347403 sucB 2-oxoglutarate dehydrogenase complex dihydrol 100.0
TIGR01349435 PDHac_trf_mito pyruvate dehydrogenase complex dihy 100.0
PLN02744539 dihydrolipoyllysine-residue acetyltransferase comp 100.0
PLN02528416 2-oxoisovalerate dehydrogenase E2 component 100.0
TIGR01348546 PDHac_trf_long pyruvate dehydrogenase complex dihy 100.0
PRK11854633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 100.0
PRK11855547 dihydrolipoamide acetyltransferase; Reviewed 100.0
PRK11856411 branched-chain alpha-keto acid dehydrogenase subun 100.0
KOG0557470 consensus Dihydrolipoamide acetyltransferase [Ener 100.0
COG0508404 AceF Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
PF00198231 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe 100.0
KOG0558474 consensus Dihydrolipoamide transacylase (alpha-ket 100.0
PLN02226463 2-oxoglutarate dehydrogenase E2 component 100.0
PTZ00144418 dihydrolipoamide succinyltransferase; Provisional 100.0
KOG0559457 consensus Dihydrolipoamide succinyltransferase (2- 100.0
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 100.0
PF00302206 CAT: Chloramphenicol acetyltransferase; InterPro: 99.66
PRK13757219 chloramphenicol acetyltransferase; Provisional 99.64
PF0281739 E3_binding: e3 binding domain; InterPro: IPR004167 99.48
COG4845219 Chloramphenicol O-acetyltransferase [Defense mecha 99.33
PRK14843347 dihydrolipoamide acetyltransferase; Provisional 97.84
PF07247480 AATase: Alcohol acetyltransferase; InterPro: IPR01 90.47
TIGR02946446 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b 87.93
PRK09294416 acyltransferase PapA5; Provisional 80.39
>PRK14843 dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-76  Score=566.22  Aligned_cols=276  Identities=33%  Similarity=0.470  Sum_probs=237.0

Q ss_pred             CCCCCCChhHhhcchhcCCCCCcccccCCCCceehhhHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCC
Q 037652           29 RSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIKSEKASSRSSSHTEKTSPSFHPQTSPAVSQGSNLELSD  108 (316)
Q Consensus        29 ~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (316)
                      .+.+.+||+||+||+|+||||++|+|||++|||+++||++|+...... +...   ++.+..  +.+. .+...  +...
T Consensus        46 ~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~-~~~~---~~~~~~--~~~~-~~~~~--~~~~  116 (347)
T PRK14843         46 TNVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIEN-DSIK---SPAQIE--KVEE-VPDNV--TPYG  116 (347)
T ss_pred             cccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccC-cccc---CCCCCc--cccC-CCccc--ccCC
Confidence            566679999999999999999999999999999999999997532111 0000   000000  0000 00000  0111


Q ss_pred             CceeecChHHHHHHHHHHHHHhhcCCeEEEee--------------c-----ccCccccHHHHHHHHHHHHHhhCcccce
Q 037652          109 SFEDLPNTQIRKAIARRLLELKQTAPHLYLSS--------------K-----KHNIKVSVNDIVIKAVAVALKNVPEANS  169 (316)
Q Consensus       109 ~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~--------------~-----~~~~kls~~~~likA~a~al~~~P~lN~  169 (316)
                      ..+.+|+++|||.||++|++||++|||||++.              +     ..|.++||++||+||++.||++||.||+
T Consensus       117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na  196 (347)
T PRK14843        117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA  196 (347)
T ss_pred             cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence            24568999999999999999999999999876              1     1367999999999999999999999999


Q ss_pred             EEecCCCcEEEcCceeEEEEEEcCCCeeeeEEecCCCCCHHHHHHHHHHHHHH--hCCCCCCccCCCcEEEecCCCCCCC
Q 037652          170 YWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAER--AGKLAPHEFQGGTFSISNLGMFPVD  247 (316)
Q Consensus       170 ~~~~~~~~i~~~~~vnigiAV~~~~GL~vpVI~~a~~~sl~eIa~~i~~l~~~--~g~L~~~d~~ggTftISnlG~~G~~  247 (316)
                      +|+++...++++++|||||||++++||+||||||++++||.||++++++|+++  +|+|+++||+||||||||+|+||+.
T Consensus       197 ~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~  276 (347)
T PRK14843        197 SLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQ  276 (347)
T ss_pred             EEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCccc
Confidence            99865446999999999999999999999999999999999999999999999  9999999999999999999999999


Q ss_pred             CeEEeecCCCeEEEEeccceeEEEEecCCCCCcEEEeEEEEEEEecccccCcHHHHHHHHHHHHhhcCC
Q 037652          248 QFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI  316 (316)
Q Consensus       248 ~~~pii~~p~~aIL~vG~i~~~p~~~~g~~~~i~~r~~m~lsls~DHRviDGa~aa~FL~~l~~~Le~P  316 (316)
                      +|+|||||||+||||+|+++++|++.+|   ++++|++|+||||||||+|||++||+||++|+++||+|
T Consensus       277 ~~tpIInpPq~aIlgvG~i~~~pv~~~g---~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p  342 (347)
T PRK14843        277 SFGPIINQPNSAILGVSSTIEKPVVVNG---EIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETP  342 (347)
T ss_pred             ceeccccCCceEEEecCCcceeeEEECC---eEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCH
Confidence            9999999999999999999999988765   89999999999999999999999999999999999997

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>PRK05704 dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>PLN02528 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion] Back     alignment and domain information
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2 Back     alignment and domain information
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion] Back     alignment and domain information
>PLN02226 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2 Back     alignment and domain information
>PRK13757 chloramphenicol acetyltransferase; Provisional Back     alignment and domain information
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit Back     alignment and domain information
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms] Back     alignment and domain information
>PRK14843 dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2 Back     alignment and domain information
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT Back     alignment and domain information
>PRK09294 acyltransferase PapA5; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
3b8k_A239 Structure Of The Truncated Human Dihydrolipoyl Acet 4e-40
3mae_A256 Crystal Structure Of Probable Dihydrolipamide Acety 3e-26
3duf_I428 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 6e-26
1b5s_A242 Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt 2e-25
1c4t_A233 Catalytic Domain From Trimeric Dihydrolipoamide Suc 9e-23
3rqc_A224 Crystal Structure Of The Catalytic Core Of The 2-Ox 1e-15
1eaa_A243 Atomic Structure Of The Cubic Core Of The Pyruvate 2e-15
1dpc_A243 Crystallographic And Enzymatic Investigations On Th 3e-15
1dpd_A243 Crystallographic And Enzymatic Investigations On Th 1e-14
3l60_A250 Crystal Structure Of Branched-Chain Alpha-Keto Acid 1e-14
1dpb_A243 Crystallographic And Enzymatic Investigations On Th 1e-13
2ihw_A262 Crystal Structure Of A Cubic Core Of The Dihydrolip 4e-11
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239 Back     alignment and structure 
Iteration: 1

 Score =  161 bits (408), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 133/219 (60%), Gaps = 26/219 (11%)
Query: 110 FEDLPNTQIRKAIARRLLELKQTAPHLYLS-----------SKKHNI------KVSVNDI 152
           F D+P + IR+ IA+RL++ KQT PH YLS            K+ N       K+SVND 
Sbjct: 12  FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDF 71
Query: 153 VIKAVAVALKNVPEANSYWNVETEEIVLFD-AIDISIAVATEKGLMTPIVRNADQKSISA 211
           +IKA A+A   VPEANS W    + ++  +  +D+S+AV+T  GL+TPIV NA  K +  
Sbjct: 72  IIKASALACLKVPEANSSW---MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVET 128
Query: 212 ISMEVKELAERA--GKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQV 269
           I+ +V  LA +A  GKL PHEFQGGTF+ISNLGMF +  F AIIN P A IL +G     
Sbjct: 129 IANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASED- 187
Query: 270 VELVIGRNEIP-AVVTKMNLTLSADHRVFEGKVGCAFFS 307
            +LV   NE    V + M++TLS DHRV +G VG  + +
Sbjct: 188 -KLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLA 225
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256 Back     alignment and structure
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428 Back     alignment and structure
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242 Back     alignment and structure
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233 Back     alignment and structure
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224 Back     alignment and structure
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243 Back     alignment and structure
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250 Back     alignment and structure
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
3b8k_A239 PDCE2;, dihydrolipoyllysine-residue acetyltransfer 9e-95
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 6e-68
3dva_I428 Dihydrolipoyllysine-residue acetyltransferase comp 2e-64
1dpb_A243 Dihydrolipoyl-transacetylase; dihydrolipoamide ace 5e-54
2ii3_A262 Lipoamide acyltransferase component of branched-C 9e-54
3rqc_A224 Probable lipoamide acyltransferase; alpha beta fol 3e-53
3mae_A256 2-oxoisovalerate dehydrogenase E2 component, dihyd 2e-51
1scz_A233 E2, dihydrolipoamide succinyltransferase; COA-depe 5e-42
1q23_A219 Chloramphenicol acetyltransferase; CAT I, trimer, 3e-31
3cla_A213 Type III chloramphenicol acetyltransferase; transf 3e-27
1zy8_K229 Pyruvate dehydrogenase protein X component, mitoch 5e-24
2i9d_A217 Chloramphenicol acetyltransferase; structural geno 1e-21
2f60_K64 Pyruvate dehydrogenase protein X component; protei 4e-09
1bal_A51 Dihydrolipoamide succinyltransferase; glycolysis; 2e-08
2eq7_C40 2-oxoglutarate dehydrogenase E2 component; protein 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
2coo_A70 Lipoamide acyltransferase component of branched- c 1e-06
3rnm_E58 Lipoamide acyltransferase component of branched-C 1e-06
1w4i_A62 Pyruvate dehydrogenase E2; transferase, peripheral 2e-06
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 1e-04
1w85_I49 Dihydrolipoyllysine-residue acetyltransferase comp 6e-04
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239 Back     alignment and structure
 Score =  279 bits (716), Expect = 9e-95
 Identities = 95/222 (42%), Positives = 125/222 (56%), Gaps = 22/222 (9%)

Query: 107 SDSFEDLPNTQIRKAIARRLLELKQTAPHLYLSSK-----------------KHNIKVSV 149
           +  F D+P + IR+ IA+RL++ KQT PH YLS                   +   K+SV
Sbjct: 9   TGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISV 68

Query: 150 NDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSI 209
           ND +IKA A+A   VPEANS W      I     +D+S+AV+T  GL+TPIV NA  K +
Sbjct: 69  NDFIIKASALACLKVPEANSSW--MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGV 126

Query: 210 SAISMEVKELAERA--GKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGN 267
             I+ +V  LA +A  GKL PHEFQGGTF+ISNLGMF +  F AIIN P A IL +G   
Sbjct: 127 ETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASE 186

Query: 268 QVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSAL 309
             +           V + M++TLS DHRV +G VG  + +  
Sbjct: 187 DKLVPADNEKGF-DVASMMSVTLSCDHRVVDGAVGAQWLAEF 227
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250 Back     alignment and structure
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 Back     alignment and structure
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243 Back     alignment and structure
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262 Back     alignment and structure
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224 Back     alignment and structure
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256 Back     alignment and structure
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233 Back     alignment and structure
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219 Back     alignment and structure
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213 Back     alignment and structure
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217 Back     alignment and structure
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64 Back     alignment and structure
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51 Back     alignment and structure
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58 Back     alignment and structure
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62 Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113 Back     alignment and structure
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
3dva_I428 Dihydrolipoyllysine-residue acetyltransferase comp 100.0
3mae_A256 2-oxoisovalerate dehydrogenase E2 component, dihyd 100.0
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 100.0
1dpb_A243 Dihydrolipoyl-transacetylase; dihydrolipoamide ace 100.0
1scz_A233 E2, dihydrolipoamide succinyltransferase; COA-depe 100.0
2ii3_A262 Lipoamide acyltransferase component of branched-C 100.0
3rqc_A224 Probable lipoamide acyltransferase; alpha beta fol 100.0
3b8k_A239 PDCE2;, dihydrolipoyllysine-residue acetyltransfer 100.0
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
1q23_A219 Chloramphenicol acetyltransferase; CAT I, trimer, 100.0
3cla_A213 Type III chloramphenicol acetyltransferase; transf 100.0
2i9d_A217 Chloramphenicol acetyltransferase; structural geno 100.0
2eq9_C41 Pyruvate dehydrogenase complex, dihydrolipoamide a 99.35
3rnm_E58 Lipoamide acyltransferase component of branched-C 99.35
2eq8_C40 Pyruvate dehydrogenase complex, dihydrolipoamide a 99.32
2eq7_C40 2-oxoglutarate dehydrogenase E2 component; protein 99.3
1w85_I49 Dihydrolipoyllysine-residue acetyltransferase comp 99.28
1bal_A51 Dihydrolipoamide succinyltransferase; glycolysis; 99.27
2coo_A70 Lipoamide acyltransferase component of branched- c 99.25
1w4i_A62 Pyruvate dehydrogenase E2; transferase, peripheral 99.19
2f60_K64 Pyruvate dehydrogenase protein X component; protei 99.14
1zy8_K229 Pyruvate dehydrogenase protein X component, mitoch 99.05
3fot_A519 15-O-acetyltransferase; fusarium head blight, tric 80.03
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Back     alignment and structure
Probab=100.00  E-value=1.2e-72  Score=555.56  Aligned_cols=275  Identities=29%  Similarity=0.415  Sum_probs=39.6

Q ss_pred             CCCCCChhHhhcchhcCCCCCcccccCCCCceehhhHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 037652           30 SFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIKSEKASSRSSSHTEKTSPSFHPQTSPAVSQGSNLELSDS  109 (316)
Q Consensus        30 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (316)
                      ..+.+||+|||||+|+||||++|+|||++|||+|+||++|+.......+...    +.+.  ...+.. +.  .......
T Consensus       127 ~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~--~~~~~~~  197 (428)
T 3dva_I          127 RRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAA----EEKA--APAAAK-PA--TTEGEFP  197 (428)
T ss_dssp             -CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTTTTTTTSCC-------------------------------------
T ss_pred             cccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhcccccccccc----cccc--ccCCCC-cc--ccccCCc
Confidence            3578999999999999999999999999999999999999754321110000    0000  000000 00  0011123


Q ss_pred             ceeecChHHHHHHHHHHHHHhhcCCeEEEee------------------cccCccccHHHHHHHHHHHHHhhCcccceEE
Q 037652          110 FEDLPNTQIRKAIARRLLELKQTAPHLYLSS------------------KKHNIKVSVNDIVIKAVAVALKNVPEANSYW  171 (316)
Q Consensus       110 ~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~------------------~~~~~kls~~~~likA~a~al~~~P~lN~~~  171 (316)
                      ++++|+++|||+||++|++||+++||||++.                  ++.|.|+||++||+||+++||++||+||++|
T Consensus       198 ~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~  277 (428)
T 3dva_I          198 ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI  277 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheE
Confidence            6789999999999999999999999999876                  1246789999999999999999999999999


Q ss_pred             ecCCCcEEEcCceeEEEEEEcCCCeeeeEEecCCCCCHHHHHHHHHHHHHH--hCCCCCCccCCCcEEEecCCCCCCCCe
Q 037652          172 NVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAER--AGKLAPHEFQGGTFSISNLGMFPVDQF  249 (316)
Q Consensus       172 ~~~~~~i~~~~~vnigiAV~~~~GL~vpVI~~a~~~sl~eIa~~i~~l~~~--~g~L~~~d~~ggTftISnlG~~G~~~~  249 (316)
                      +++.++|+++++||||+||++++||++|||+|+++++|.+|++++++|+++  +|+|+++|++||||||||+|+||+.+|
T Consensus       278 ~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~f  357 (428)
T 3dva_I          278 DDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWF  357 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccce
Confidence            874346999999999999999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             EEeecCCCeEEEEeccceeEEEEecCCCCCcEEEeEEEEEEEecccccCcHHHHHHHHHHHHhhcCC
Q 037652          250 CAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI  316 (316)
Q Consensus       250 ~pii~~p~~aIL~vG~i~~~p~~~~g~~~~i~~r~~m~lsls~DHRviDGa~aa~FL~~l~~~Le~P  316 (316)
                      +||||+||+|||++|+++++|++.+|   ++++|++|+|||+||||+|||+++++||++|+++||+|
T Consensus       358 tpIin~pq~aIl~vG~i~~~pv~~~g---~i~~r~~m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P  421 (428)
T 3dva_I          358 TPVINHPEVAILGIGRIAEKPIVRDG---EIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDP  421 (428)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             EeecCCCCceEEEccccEEEEEEECC---EEEEeeeEEEEEEecccccchHHHHHHHHHHHHHHhCH
Confidence            99999999999999999999988654   89999999999999999999999999999999999997
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Back     alignment and structure
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0 Back     alignment and structure
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Back     alignment and structure
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Back     alignment and structure
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Back     alignment and structure
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Back     alignment and structure
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Back     alignment and structure
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} Back     alignment and structure
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A Back     alignment and structure
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} Back     alignment and structure
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Back     alignment and structure
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Back     alignment and structure
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Back     alignment and structure
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Back     alignment and structure
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Back     alignment and structure
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Back     alignment and structure
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1scza_233 c.43.1.1 (A:) Dihydrolipoamide succinyltransferase 4e-49
d1q23a_214 c.43.1.1 (A:) Chloramphenicol acetyltransferase, C 6e-39
d1b5sa_242 c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { 2e-37
d3claa_213 c.43.1.1 (A:) Chloramphenicol acetyltransferase, C 3e-37
d1dpba_243 c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { 3e-30
d2cyua139 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa 7e-08
d1w85i_42 a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl 1e-07
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  161 bits (409), Expect = 4e-49
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 26/226 (11%)

Query: 111 EDLPNTQIRKAIARRLLELKQTAPHLYLS-------------------SKKHNIKVSVND 151
           + +P T++RK +A RLLE K +   L                       K+H I++    
Sbjct: 5   KRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMS 64

Query: 152 IVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISA 211
             +KAV  ALK  PE N+    + +++V  +  D+S+AV+T +GL+TP++R+ D   ++ 
Sbjct: 65  FYVKAVVEALKRYPEVNASI--DGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMAD 122

Query: 212 ISMEVKELAE--RAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQV 269
           I  ++KELA   R GKL   +  GG F+I+N G+F       IIN P + IL +      
Sbjct: 123 IEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDR 182

Query: 270 VELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRD 315
              V G+ EI   +  M L LS DHR+ +G+    F   +     D
Sbjct: 183 PMAVNGQVEI---LPMMYLALSYDHRLIDGRESVGFLVTIKELLED 225
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242 Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213 Back     information, alignment and structure
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243 Back     information, alignment and structure
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39 Back     information, alignment and structure
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1dpba_243 Dihydrolipoamide acetyltransferase {Azotobacter vi 100.0
d1scza_233 Dihydrolipoamide succinyltransferase {Escherichia 100.0
d1b5sa_242 Dihydrolipoamide acetyltransferase {Bacillus stear 100.0
d1q23a_214 Chloramphenicol acetyltransferase, CAT {Escherichi 100.0
d3claa_213 Chloramphenicol acetyltransferase, CAT {Escherichi 100.0
d1w85i_42 E3/E1 binding domain of dihydrolipoyl acetyltransf 99.61
d2cyua139 E3-binding domain of dihydrolipoamide succinyltran 99.56
d1q9ja2238 Polyketide synthase associated protein 5, PapA5 {M 82.3
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=8.6e-64  Score=456.86  Aligned_cols=206  Identities=31%  Similarity=0.410  Sum_probs=197.1

Q ss_pred             CCceeecChHHHHHHHHHHHHHhhcCCeEEEee------------------cccCccccHHHHHHHHHHHHHhhCcccce
Q 037652          108 DSFEDLPNTQIRKAIARRLLELKQTAPHLYLSS------------------KKHNIKVSVNDIVIKAVAVALKNVPEANS  169 (316)
Q Consensus       108 ~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~------------------~~~~~kls~~~~likA~a~al~~~P~lN~  169 (316)
                      ++.+++|++++||+||++|++||++|||||++.                  ++.|.|+|+++|++||++.||++||.+|+
T Consensus        13 G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~~~~~~k~t~~~~iikA~a~Al~~~P~~Ns   92 (243)
T d1dpba_          13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNS   92 (243)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGE
T ss_pred             CCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHhhhhhh
Confidence            456889999999999999999999999999876                  24678999999999999999999999999


Q ss_pred             EEecCCCcEEEcCceeEEEEEEcCCCeeeeEEecCCCCCHHHHHHHHHHHHHH--hCCCCCCccCCCcEEEecCCCCCCC
Q 037652          170 YWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAER--AGKLAPHEFQGGTFSISNLGMFPVD  247 (316)
Q Consensus       170 ~~~~~~~~i~~~~~vnigiAV~~~~GL~vpVI~~a~~~sl~eIa~~i~~l~~~--~g~L~~~d~~ggTftISnlG~~G~~  247 (316)
                      +|++++..+++++++|||+||++++||++|||+||+++|+.+|++++++|+++  +|+|+++|++||||||||+|+||+.
T Consensus        93 ~~~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~~  172 (243)
T d1dpba_          93 SLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGT  172 (243)
T ss_dssp             EECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCS
T ss_pred             ccccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccce
Confidence            99887667999999999999999999999999999999999999999999999  9999999999999999999999999


Q ss_pred             CeEEeecCCCeEEEEeccceeEEEEecCCCCCcEEEeEEEEEEEecccccCcHHHHHHHHHHHHhhcCC
Q 037652          248 QFCAIINTPLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI  316 (316)
Q Consensus       248 ~~~pii~~p~~aIL~vG~i~~~p~~~~g~~~~i~~r~~m~lsls~DHRviDGa~aa~FL~~l~~~Le~P  316 (316)
                      +|+|||||||+||||+|+++++|++++|   ++++|++|+|||||||||+||++||+||++|+++||||
T Consensus       173 ~~tpiInppq~aIlgvG~i~~~pv~~~~---~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~~lE~P  238 (243)
T d1dpba_         173 AFTPIVNAPEVAILGVSKASMQPVWDGK---AFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADI  238 (243)
T ss_dssp             CCCCCCCTTSSEEEEECCCEEEEEECSS---SEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCG
T ss_pred             eEEeeeccccceeeecccceeeEEEECC---EEEEEEEEEEEEEeecccccHHHHHHHHHHHHHHHhCH
Confidence            9999999999999999999999988654   89999999999999999999999999999999999998
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure