Citrus Sinensis ID: 037661

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MSSSSSSSSSSSSSSLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQIQAENQDPEMNVVKLENQDPEDNNDDKPKPKPSLVE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHEccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msssssssssssssslssspfnnpEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDrarmknpnhqglnshFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLfkpdrcssvgadTANKLINEAWEvlsdpkrreAYDLLMCFDKTVQiqaenqdpemnvvklenqdpednnddkpkpkpslve
Flexible Loop (DISEMBL)
msssssssssssssslssspfnNPEAREALFSKLADKEAEASKHMAeelfkeekiDSALCVVDRARMknpnhqglnSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQlfkpdrcssvgADTANKLINEawevlsdpkRREAYDLLMCFDKTVQIqaenqdpeMNVVKLenqdpednnddkpkpkpslve
Low Complexity Region (SEG)
MsssssssssssssslsssPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQIQAENQDPEMNVVKLenqdpednnddkpkpkpSLVE
Disordered region (IsUnstruct)
******************************************************IDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQI***********************************
Disordered Region (DISOPRED)
*********************NNPEAREA***KLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDL*********************************************
Disordered Region (DISEMBL)
***********************PEAREALFSKLA**********AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQIQAENQDPEMNVVKLEN*******************
Disordered Region (DISPRO)
********************************KLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK***************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSSSSSSSSSSSLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQIQAENQDPEMNVVKLENQDPEDNNDDKPKPKPSLVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
B3WEQ6	387	Chaperone protein DnaJ OS	yes	no	0.323	0.167	0.441	6e-07
Q038N5	387	Chaperone protein DnaJ OS	yes	no	0.323	0.167	0.441	6e-07
P0DJM1	377	Chaperone protein DnaJ OS	yes	no	0.318	0.169	0.461	7e-07
B8DE39	376	Chaperone protein DnaJ OS	yes	no	0.318	0.170	0.461	7e-07
G2K045	377	Chaperone protein DnaJ OS	yes	no	0.318	0.169	0.461	7e-07
Q92BN9	376	Chaperone protein DnaJ OS	yes	no	0.318	0.170	0.461	7e-07
Q71ZJ8	376	Chaperone protein DnaJ OS	yes	no	0.318	0.170	0.446	1e-06
C1KVB9	376	Chaperone protein DnaJ OS	yes	no	0.318	0.170	0.446	1e-06
O66921	376	Chaperone protein DnaJ 2	yes	no	0.338	0.180	0.405	1e-06
Q28I38	375	DnaJ homolog subfamily B	yes	no	0.318	0.170	0.430	2e-06

>sp|B3WEQ6|DNAJ_LACCB Chaperone protein DnaJ OS=Lactobacillus casei (strain BL23) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 89  AEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
           A++K +Y  LG+ RD  A  D I+K +  L + + PD   + GA+   K INEA++VLSD
Sbjct: 2   ADQKDYYETLGVSRD--ADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSD 59

Query: 148 PKRREAYD 155
           P++R AYD
Sbjct: 60  PQKRAAYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Lactobacillus casei (strain BL23) (taxid: 543734)

>sp|Q038N5|DNAJ_LACC3 Chaperone protein DnaJ OS=Lactobacillus casei (strain ATCC 334) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 89  AEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
           A++K +Y  LG+ RD  A  D I+K +  L + + PD   + GA+   K INEA++VLSD
Sbjct: 2   ADQKDYYETLGVSRD--ADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSD 59

Query: 148 PKRREAYD 155
           P++R AYD
Sbjct: 60  PQKRAAYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Lactobacillus casei (strain ATCC 334) (taxid: 321967)

>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
           K+ +Y VLGI    A  D IKK Y  L + + PD     GAD   K I+EA+E LSDP++
Sbjct: 3   KRDYYEVLGI-SKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQK 61

Query: 151 REAYD 155
           R  YD
Sbjct: 62  RAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|B8DE39|DNAJ_LISMH Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
           K+ +Y VLGI    A  D IKK Y  L + + PD     GAD   K I+EA+E LSDP++
Sbjct: 3   KRDYYEVLGI-SKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQK 61

Query: 151 REAYD 155
           R  YD
Sbjct: 62  RAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4a (strain HCC23) (taxid: 552536)

>sp|G2K045|DNAJ_LISM4 Chaperone protein DnaJ OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
           K+ +Y VLGI    A  D IKK Y  L + + PD     GAD   K I+EA+E LSDP++
Sbjct: 3   KRDYYEVLGI-SKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQK 61

Query: 151 REAYD 155
           R  YD
Sbjct: 62  RAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|Q92BN9|DNAJ_LISIN Chaperone protein DnaJ OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
           K+ +Y VLGI    A  D IKK Y  L + + PD     GAD   K I+EA+E LSDP++
Sbjct: 3   KRDYYEVLGI-SKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQK 61

Query: 151 REAYD 155
           R  YD
Sbjct: 62  RAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)

>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
           K+ +Y VLG+    A  D IKK Y  L + + PD     GAD   K I+EA+E LSDP++
Sbjct: 3   KRDYYEVLGV-SKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQK 61

Query: 151 REAYD 155
           R  YD
Sbjct: 62  RAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=dnaJ PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
           K+ +Y VLG+    A  D IKK Y  L + + PD     GAD   K I+EA+E LSDP++
Sbjct: 3   KRDYYEVLGV-SKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQK 61

Query: 151 REAYD 155
           R  YD
Sbjct: 62  RAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

>sp|O66921|DNAJ2_AQUAE Chaperone protein DnaJ 2 OS=Aquifex aeolicus (strain VF5) GN=dnaJ2 PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 88  AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
           ++ KK +Y +LG+    A  + IKK Y  LV+ + PD C     +   K INEA++VLSD
Sbjct: 3   SSTKKDYYEILGV-PRNASQEEIKKAYRRLVRKYHPDICKKPECEEKFKEINEAYQVLSD 61

Query: 148 PKRREAYDL 156
           P++R+ YD+
Sbjct: 62  PEKRKLYDM 70

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|Q28I38|DJB14_XENTR DnaJ homolog subfamily B member 14 OS=Xenopus tropicalis GN=dnajb14 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151
           K++Y VLG+    AG + +KK Y  L   F PD+  + GA  A K I  A+ VLS+P++R
Sbjct: 105 KTYYEVLGVSTD-AGEEDLKKAYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKR 163

Query: 152 EAYDL 156
           + YDL
Sbjct: 164 KQYDL 168

May act as a co-chaperone.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
359473614	1168	PREDICTED: uncharacterized protein LOC10	0.577	0.099	0.382	1e-11
449524856	759	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.577	0.152	0.365	4e-11
449456494	759	PREDICTED: uncharacterized protein LOC10	0.577	0.152	0.365	4e-11
449440969	841	PREDICTED: uncharacterized protein LOC10	0.577	0.137	0.365	1e-10
255578737	636	heat shock protein binding protein, puta	0.577	0.182	0.357	2e-10
224072578	678	predicted protein [Populus trichocarpa]	0.582	0.172	0.360	3e-10
255540213	783	conserved hypothetical protein [Ricinus	0.601	0.154	0.359	3e-10
356529354	812	PREDICTED: uncharacterized protein LOC10	0.636	0.157	0.348	4e-10
356561770	779	PREDICTED: uncharacterized protein LOC10	0.582	0.150	0.368	4e-10
302143678	585	unnamed protein product [Vitis vinifera]	0.577	0.198	0.349	6e-10

>gi|359473614|ref|XP_002271091.2| PREDICTED: uncharacterized protein LOC100257476 [Vitis vinifera]

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 7/123 (5%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKK----- 92
           EA  +K +AE+ F    I  A  +  +A+   P   GL    A   VH ++AE K     
Sbjct: 386 EATRAKEIAEKKFIARDIAGAKKLALKAQNLFPGLDGLPQMLATLDVH-ISAENKINGEA 444

Query: 93  SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
            WY +LG+ + +A  D ++K+Y  L  +  PD+  S+GAD A KLI+EAW +LSD  +R 
Sbjct: 445 DWYGILGV-NPQADDDTVRKQYRKLALMLHPDKNKSIGADGAFKLISEAWSLLSDKTKRI 503

Query: 153 AYD 155
           AYD
Sbjct: 504 AYD 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524856|ref|XP_004169437.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101216332 [Cucumis sativus]

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 7/123 (5%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKK----- 92
           EA  +K +AE  F E    +A   V +A+   P   GL+       V+ ++AE K     
Sbjct: 7   EAARAKEIAERKFTERNYSAAKKFVLKAQNLYPGLDGLSQMMTTLEVY-ISAENKINGET 65

Query: 93  SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
            WY +LG+ +H A  D I+K+Y  L  +  PD+  S+GA+ A KL++EAW +LSD  +R 
Sbjct: 66  DWYGILGV-NHLADDDTIRKQYRKLALVLHPDKNKSLGAEGAFKLVSEAWSLLSDKAKRL 124

Query: 153 AYD 155
           AY+
Sbjct: 125 AYN 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456494|ref|XP_004145984.1| PREDICTED: uncharacterized protein LOC101216332 [Cucumis sativus]

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 7/123 (5%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKK----- 92
           EA  +K +AE  F E    +A   V +A+   P   GL+       V+ ++AE K     
Sbjct: 7   EAARAKEIAERKFTERNYSAAKKFVLKAQNLYPGLDGLSQMMTTLEVY-ISAENKINGET 65

Query: 93  SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
            WY +LG+ +H A  D I+K+Y  L  +  PD+  S+GA+ A KL++EAW +LSD  +R 
Sbjct: 66  DWYGILGV-NHLADDDTIRKQYRKLALVLHPDKNKSLGAEGAFKLVSEAWSLLSDKAKRL 124

Query: 153 AYD 155
           AY+
Sbjct: 125 AYN 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440969|ref|XP_004138256.1| PREDICTED: uncharacterized protein LOC101223022 [Cucumis sativus] gi|449501461|ref|XP_004161373.1| PREDICTED: uncharacterized LOC101223022 [Cucumis sativus]

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 7/123 (5%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKK----- 92
           +A  +K +AE  F E  I +A+    RA    P   GL+   A   V+ L+AEK+     
Sbjct: 7   DAIKAKQVAERKFVEMDIATAVRFALRAHSLYPGLDGLSQFIATLNVY-LSAEKRIDGCS 65

Query: 93  SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
            WY +LG+ D  A  + I+K Y  L  +  PD+  S+GAD A K+++EAW  LSD  +R 
Sbjct: 66  DWYRILGV-DPLADEETIRKHYRKLALILHPDKNKSIGADGAFKIVSEAWSCLSDKAKRA 124

Query: 153 AYD 155
            +D
Sbjct: 125 VFD 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578737|ref|XP_002530227.1| heat shock protein binding protein, putative [Ricinus communis] gi|223530274|gb|EEF32174.1| heat shock protein binding protein, putative [Ricinus communis]

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKS---- 93
           EA  +K +AE+ F E+    A     +A+   P  +G++   A + V+ +A+E K     
Sbjct: 7   EALRAKEIAEKRFGEKDFFGAKNYALKAKTLFPGLEGISQMVATFDVY-IASEVKCNGEI 65

Query: 94  -WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
            +Y+VLG++   A  D +KK+Y  +  L  PD+  +VGAD A KL++EAW +LSD ++R 
Sbjct: 66  DYYSVLGLKPS-ADRDTVKKQYRKMAVLLHPDKNKTVGADGAFKLVSEAWTMLSDNRKRS 124

Query: 153 AYD 155
           +YD
Sbjct: 125 SYD 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072578|ref|XP_002303790.1| predicted protein [Populus trichocarpa] gi|222841222|gb|EEE78769.1| predicted protein [Populus trichocarpa]

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 5/122 (4%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEK----KS 93
           EA  +K +AE+ F  + I  A     +A+   P  +G+    A   V+  A  K      
Sbjct: 7   EATRAKEIAEKKFSAKDIAGAKKFALKAQNLYPGLEGIPQMMATLDVYVAAGNKINGEAD 66

Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREA 153
           WY +LG  D +A  + ++K Y  L  +  PD+  SVGAD A K I+EAW +LSD  +R A
Sbjct: 67  WYGILGA-DPQADDEAVRKHYRKLALMLHPDKNKSVGADGAFKFISEAWSLLSDKTKRMA 125

Query: 154 YD 155
           YD
Sbjct: 126 YD 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540213|ref|XP_002511171.1| conserved hypothetical protein [Ricinus communis] gi|223550286|gb|EEF51773.1| conserved hypothetical protein [Ricinus communis]

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 7/128 (5%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKS---- 93
           +A  +K MAE+ F E  +  A     +A    P   GL+   A   V+  A E+++    
Sbjct: 7   DAFRAKEMAEKKFLESDVAGAKRFALKAHNLYPGLDGLSQFLATLDVYVSAKERRNGEID 66

Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREA 153
           WY VLGI +     + I+K+Y  L  +  PD+  SVGA+ A K+++EAW +LSD  +R A
Sbjct: 67  WYGVLGI-EPPTDDNTIRKQYRKLAIILHPDKNKSVGAEGAFKILSEAWGLLSDKAKRSA 125

Query: 154 YD--LLMC 159
           YD  L +C
Sbjct: 126 YDQKLNLC 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529354|ref|XP_003533259.1| PREDICTED: uncharacterized protein LOC100816712 [Glycine max]

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 7/135 (5%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKS---- 93
           EA  +K +AE  F  +    A     +A    P+ +G++   A   V+ +AAE K+    
Sbjct: 7   EATRAKEIAERKFAAKDTLGAKKFALKALNLFPDLEGISQMVATLDVY-IAAENKTNGEA 65

Query: 94  -WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
            WY VLG+ D  A  D ++++Y  L     PD+  S+GAD A KLI+EAW +LSD  +R 
Sbjct: 66  DWYGVLGV-DPLADEDTVRRQYRKLALQLHPDKNKSIGADGAFKLISEAWSLLSDKAKRA 124

Query: 153 AYDLLMCFDKTVQIQ 167
           +YD     D+ V  +
Sbjct: 125 SYDKRSGRDRKVSTK 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561770|ref|XP_003549151.1| PREDICTED: uncharacterized protein LOC100806402 [Glycine max]

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 5/122 (4%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKS---- 93
           EA  +K ++E  F  +    A     +A    P+ +G++   A   V+  AA K +    
Sbjct: 7   EATRAKEISERKFAAKDTLGAKKFALKALNLFPDLEGISQMVATLDVYIAAANKTNGEAD 66

Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREA 153
           WY VLG+ D  A  D ++K+Y  L     PD+  S+GAD A KLI+EAW +LSD  +R A
Sbjct: 67  WYGVLGV-DPLADDDTVRKQYRKLALQLHPDKNKSIGADGAFKLISEAWSLLSDKAKRGA 125

Query: 154 YD 155
           YD
Sbjct: 126 YD 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143678|emb|CBI22539.3| unnamed protein product [Vitis vinifera]

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 7/123 (5%)

Query: 38  EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKK----- 92
           EA  +K +A   F+E+    A   V +A+   P  +GL+       V+ ++AEKK     
Sbjct: 7   EASRAKDIAVRKFREKDFLGAKKFVLKAQNLYPGLEGLSQMLTILDVY-ISAEKKVSGEV 65

Query: 93  SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
            WY +LG+    A  + +KK+Y  L  +  PD+  S+GAD A KL++EAW +LSD  +R 
Sbjct: 66  DWYGILGV-SPLADEETVKKQYRKLALILHPDKNKSIGADGAFKLVSEAWSLLSDKGKRL 124

Query: 153 AYD 155
           +Y+
Sbjct: 125 SYN 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2169170	431	AT5G37380 [Arabidopsis thalian	0.577	0.269	0.341	1.5e-11
TAIR|locus:2122950	558	AT4G19570 [Arabidopsis thalian	0.587	0.211	0.349	5.1e-11
TAIR|locus:2051244	706	AT2G05230 [Arabidopsis thalian	0.577	0.164	0.341	2.5e-10
TAIR|locus:2051274	706	AT2G05250 [Arabidopsis thalian	0.577	0.164	0.341	2.5e-10
TAIR|locus:2151714	241	AT5G37750 [Arabidopsis thalian	0.417	0.348	0.379	1.2e-09
TAIR|locus:2163786	726	AT5G53150 [Arabidopsis thalian	0.587	0.162	0.325	1.5e-09
TAIR|locus:2040110	656	AT2G25560 [Arabidopsis thalian	0.587	0.179	0.32	1.6e-09
TAIR|locus:2195281	138	AT1G09260 [Arabidopsis thalian	0.547	0.797	0.285	4.7e-09
TAIR|locus:2182508	287	AT5G37440 [Arabidopsis thalian	0.318	0.222	0.415	1.1e-08
TAIR|locus:2122970	345	AT4G19590 [Arabidopsis thalian	0.338	0.197	0.405	1.8e-08

TAIR|locus:2169170 AT5G37380 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 42/123 (34%), Positives = 66/123 (53%)

Query:    38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKK----- 92
             EA  +K +AE  FK + I  A     +A+   P  +G++   A   V+ +AAE K     
Sbjct:     7 EATRAKEIAENKFKMKDIAGAKKFALKAQNLYPEIEGVSQMLATLDVY-IAAENKVNEDV 65

Query:    93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
              WY +L     R   + +K++Y  L  +  PD+  S+GA+ A K ++EAW+ LSD ++R 
Sbjct:    66 DWYGILNASP-RDDDETLKRKYRKLALMLHPDKNKSIGAEGAFKHVSEAWKFLSDKEKRA 124

Query:   153 AYD 155
             AYD
Sbjct:   125 AYD 127

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2122950 AT4G19570 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 43/123 (34%), Positives = 61/123 (49%)

Query:    37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEK----K 92
             +EA+ +  +AE+   +   + A     +A    PN  GL        V+  A  K     
Sbjct:     6 EEAKRALDIAEKKLSKNDYNRAKRYAKKAHRMYPNLVGLEQVLIMIDVYISATNKINGEA 65

Query:    93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
              WY VLG+ D  A  + +KKRY  L  L  PD+    GA+ A KLI EAW++LSD  +R 
Sbjct:    66 DWYRVLGV-DPLADDEAVKKRYRKLALLLHPDKNRFTGAEGAFKLILEAWDLLSDKSQRS 124

Query:   153 AYD 155
             +YD
Sbjct:   125 SYD 127

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2051244 AT2G05230 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 42/123 (34%), Positives = 68/123 (55%)

Query:    37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKS--- 93
             +EA   K +AE  F E+   SA     +A+   P+ +GL+   A + V+ LA++ +S   
Sbjct:     6 EEALRVKQIAERRFAEKDFTSARSYALKAKSLFPDLEGLSQMVATFEVY-LASQTRSGGQ 64

Query:    94 --WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151
               +YAVLG++   AG   +KK+Y+ +  L  PD+   +GAD A  LI+EAW  LS+   +
Sbjct:    65 IDYYAVLGLKPS-AGKREVKKQYKKMAVLLHPDKNKCIGADGAFHLISEAWSFLSNEFNK 123

Query:   152 EAY 154
               +
Sbjct:   124 STF 126

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2051274 AT2G05250 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 42/123 (34%), Positives = 68/123 (55%)

Query:    37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKS--- 93
             +EA   K +AE  F E+   SA     +A+   P+ +GL+   A + V+ LA++ +S   
Sbjct:     6 EEALRVKQIAERRFAEKDFTSARSYALKAKSLFPDLEGLSQMVATFEVY-LASQTRSGGQ 64

Query:    94 --WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151
               +YAVLG++   AG   +KK+Y+ +  L  PD+   +GAD A  LI+EAW  LS+   +
Sbjct:    65 IDYYAVLGLKPS-AGKREVKKQYKKMAVLLHPDKNKCIGADGAFHLISEAWSFLSNEFNK 123

Query:   152 EAY 154
               +
Sbjct:   124 STF 126

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2151714 AT5G37750 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 33/87 (37%), Positives = 47/87 (54%)

Query:    70 PNHQGL-NSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS 128
             PN  G  N+    Y+      E   WY VLG+ D  +  + +KK Y+ L  L  PD+   
Sbjct:    47 PNLDGRWNTMIDVYICGSNVGES-DWYGVLGV-DPLSDDETVKKHYKQLALLLHPDKNKC 104

Query:   129 VGADTANKLINEAWEVLSDPKRREAYD 155
              GA+ A KL++EAW +LSD  +R +YD
Sbjct:   105 YGAEGAFKLVSEAWCLLSDKVQRSSYD 131

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2163786 AT5G53150 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 40/123 (32%), Positives = 61/123 (49%)

Query:    38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH----KLAAEKKS 93
             EA+ +  +AE    E+    A    ++A+   P   GL   F    V+    K  A +  
Sbjct:     7 EAKRAMDIAERKMTEKDYTGAKKFANKAQNLFPELDGLKQLFVAINVYISGEKTFAGEAD 66

Query:    94 WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREA 153
             WY VLG+ D  A  + +KK+Y  LV +  PD+    GA+ A  L+ EAW +LSD  +R  
Sbjct:    67 WYGVLGV-DPFASDEALKKQYRKLVLMLHPDKNKCKGAEGAFNLVAEAWALLSDKDKRIL 125

Query:   154 YDL 156
             Y++
Sbjct:   126 YNV 128

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2040110 AT2G25560 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 40/125 (32%), Positives = 63/125 (50%)

Query:    37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSW-- 94
             +EA  ++ +A+  F       A     +A+   P   G+    A + VH L+A+   +  
Sbjct:     6 EEATRAREIAKRKFLANDFAGARKFALKAQFLYPELDGIAQMVATFDVH-LSAQNIIYGD 64

Query:    95 ---YAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151
                Y VLG+    A  ++++KRY  L  +  PDR  SVGA+ A K +++AW V SD  +R
Sbjct:    65 VDHYGVLGLNPE-ADDEIVRKRYRKLAVMLHPDRNKSVGAEEAFKFLSQAWGVFSDKAKR 123

Query:   152 EAYDL 156
               YDL
Sbjct:   124 ADYDL 128

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2195281 AT1G09260 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 34/119 (28%), Positives = 69/119 (57%)

Query:    45 MAEELFKEEKIDSALCVVDRARMKNPN----HQGLNSHFACYVVHKLAAEKKSW--YAVL 98
             +AE  ++   +  A+ +V+     +PN    H  ++     Y ++ L ++K S+  Y +L
Sbjct:    17 LAEAHYQRGNLKGAIEIVNDLTFGHPNTSSNHHEISQILLAYQIN-LTSQKASFTHYDIL 75

Query:    99 GIRDHRAGVDVIKKRY-EALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDL 156
              I +      +I+++Y + LV+L+ PD   S+ A +A ++IN AW++LSDP++R+ Y++
Sbjct:    76 RISNPFCSHQMIQRKYRDILVKLY-PDTNKSIAAKSAFEIINYAWKILSDPEKRKDYNI 133

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2182508 AT5G37440 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query:    91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
             +  WY VLG+ D  +  + +KK Y+ L  L  PD+    GA+ A KL++EAW +LSD  +
Sbjct:    72 ESDWYGVLGV-DPLSDDETVKKHYKQLALLLHPDKNKCYGAEGAFKLVSEAWCLLSDKLQ 130

Query:   151 REAYD 155
             R +YD
Sbjct:   131 RSSYD 135

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2122970 AT4G19590 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 28/69 (40%), Positives = 43/69 (62%)

Query:    87 LAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLS 146
             ++  +  WY +LG+ D  A  +V+KK+Y+ L  L  PD+ +  GA+ A KL+  AW +LS
Sbjct:    50 ISGGESDWYGILGV-DPLADEEVVKKQYKRLALLLHPDKNNCEGAEGAFKLVLAAWCLLS 108

Query:   147 DPKRREAYD 155
             D  +R AYD
Sbjct:   109 DKVKRIAYD 117

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002795001 SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (817 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-14
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-12
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-11
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-10
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	3e-10
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	8e-10
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-09
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-09
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-09
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	4e-09
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	4e-09
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	8e-09
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-08
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	4e-08
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	5e-08
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	6e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	8e-08
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	1e-07
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	2e-07
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-07
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	3e-07
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	5e-07
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	6e-07
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	6e-07
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-06
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	3e-06
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-05
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	1e-05
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	1e-05
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-05
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-05
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-05
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	4e-05
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	7e-05
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	3e-04
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	7e-04
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	0.003

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 64.5 bits (158), Expect = 2e-14
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADT-ANKLINEAWEVLSDPKRRE 152
           +Y +LG+    A  + IKK Y  L   + PD+     A     K INEA+EVLSDP++R 
Sbjct: 2   YYEILGV-PRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 153 AYD 155
            YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 93  SWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151
            +Y +LG+ +D  A  + IKK Y  L + + PDR     A+   K INEA+EVLSDP++R
Sbjct: 1   DYYEILGVSKD--ASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKR 58

Query: 152 EAYD 155
             YD
Sbjct: 59  AQYD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 91  KKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDP 148
           K+ +Y +LG+ +D  A  + IKK Y  L + + PDR      A+   K INEA+EVLSDP
Sbjct: 3   KRDYYEILGVSKD--ASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60

Query: 149 KRREAYDL 156
           ++R AYD 
Sbjct: 61  EKRAAYDQ 68

Length = 371

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 90  EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPK 149
            KK +Y +LG+    A  + IKK Y  L + + PD   +  A+   K INEA++VLSDP+
Sbjct: 1   AKKDYYEILGV-SRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPE 59

Query: 150 RREAYD 155
           +R+ YD
Sbjct: 60  KRKLYD 65

Length = 382

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 89  AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP 148
              K +YA+LG+    A  D IKK ++ L + + PD   S GA+   K INEA+ VLSDP
Sbjct: 1   MAYKDYYAILGV-PKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDP 59

Query: 149 KRREAYD 155
           ++R  YD
Sbjct: 60  EKRRIYD 66

Length = 291

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 52.2 bits (126), Expect = 8e-10
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSD 147
           +Y +LG+    A  + IKK Y  L   + PD+      A+   K INEA+EVLSD
Sbjct: 2   YYDILGV-PPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS--VGADTANKLINEAWEVLSDPK 149
             +Y +LG+    A +D IKK Y  L   + PD+       A+   K INEA+EVLSDP+
Sbjct: 1   TDYYEILGV-PRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Query: 150 R 150
           +
Sbjct: 60  K 60

Length = 60

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 55.5 bits (135), Expect = 2e-09
 Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 91  KKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDP 148
           K+ +Y VLG+ R+  A  D IKK Y  L   + PDR      A+   K I EA+EVLSDP
Sbjct: 3   KRDYYEVLGVSRN--ASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60

Query: 149 KRREAYD 155
           ++R AYD
Sbjct: 61  QKRAAYD 67

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 89  AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN---KLINEAWEVL 145
           A KK +Y +LG+ D  A  + IKK Y  L + + PD   + G   A    K INEA+E+L
Sbjct: 2   AAKKDYYEILGV-DRNATEEEIKKAYRRLAKKYHPD--LNPGDKEAEQKFKEINEAYEIL 58

Query: 146 SDPKRREAYD 155
           SDP++R  YD
Sbjct: 59  SDPQKRAQYD 68

Length = 386

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 89  AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP 148
                +Y  LG+    A  D IKK Y  L + + PD     GA+   K + EA+E LSDP
Sbjct: 1   MNNTEYYDRLGV-SKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDP 59

Query: 149 KRREAYD 155
           ++R AYD
Sbjct: 60  QKRAAYD 66

Length = 380

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 90  EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPK 149
            K+ +Y VLG+    A  D IKK Y  L + + PD     GAD   K I+EA+EVLSD +
Sbjct: 2   AKRDYYEVLGV-SKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQ 60

Query: 150 RREAYD 155
           +R  YD
Sbjct: 61  KRAQYD 66

Length = 376

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 90  EKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRC--SSVGADTANKLINEAWEVLS 146
           EKK +Y +LG+ R+  A  + IK+ Y+ LV+ + PDR   +   A+   K I EA+EVLS
Sbjct: 2   EKKDYYEILGVSRN--ATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLS 59

Query: 147 DPKRREAYD 155
           DP++R  YD
Sbjct: 60  DPQKRAMYD 68

Length = 369

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 89  AEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
           A  + +Y +LG+ +D  A V+ IKK Y  L   + PD+     A+   K I+EA+ VLSD
Sbjct: 2   ATTRDYYEILGLSKD--ASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSD 59

Query: 148 PKRREAYD 155
            ++R  YD
Sbjct: 60  AEKRAQYD 67

Length = 377

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 90  EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPK 149
           E K +YA++G++     +  IK  Y  L + + PD      A+   K + EAWEVLSD +
Sbjct: 2   ELKDYYAIMGVKP-TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ 60

Query: 150 RREAYDLLMCFDKTVQIQAENQDPEMN 176
           RR  YD         Q+     DP+ N
Sbjct: 61  RRAEYD---------QLWQHRNDPQFN 78

Length = 306

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 91  KKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPD-RCSSVGADTANKLINEAWEVLSDP 148
           +K +Y VLG+ +D  A    IKK Y  L + + PD       A+   K I+EA++VLSD 
Sbjct: 8   EKDYYKVLGVPKD--ATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE 65

Query: 149 KRREAYD 155
           K+R+ YD
Sbjct: 66  KKRKEYD 72

Length = 389

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 89  AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP 148
           AEK+ +Y VLG+ D  A    IKK Y  L + + PD     GA+   K I+EA+ VLSD 
Sbjct: 2   AEKRDYYEVLGV-DRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDD 60

Query: 149 KRREAYD 155
           ++R+ YD
Sbjct: 61  EKRQRYD 67

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 89  AEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLIN---EAWEV 144
             K+ +Y +LG+ RD  A  + IKK Y  L   + PDR  + G   A +L     EA+EV
Sbjct: 1   MVKRDYYEILGVTRD--ASEEEIKKSYRKLAMKYHPDR--NPGDKEAEELFKEAAEAYEV 56

Query: 145 LSDPKRREAYD 155
           LSDPK+R  YD
Sbjct: 57  LSDPKKRGIYD 67

Length = 366

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
           K+ +Y VLG+ D  A VD +KK Y  L + + PD   +  A+   K + EA++ LSDP++
Sbjct: 3   KRDYYEVLGV-DRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQK 61

Query: 151 REAYD 155
           +  YD
Sbjct: 62  KAHYD 66

Length = 371

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREA 153
           +Y +LG+    A  D IK  Y  L   + PDR    GA      INEA+ VLSD ++R  
Sbjct: 4   YYELLGV-SRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 154 YD 155
           YD
Sbjct: 63  YD 64

Length = 371

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 94  WYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
           +Y +LG+ RD  A  D +K+ Y  L + + PD     GA+   K IN A+EVLSDP+ R 
Sbjct: 5   YYEILGVSRD--ADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 153 AYD 155
            YD
Sbjct: 63  RYD 65

Length = 374

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKL--INEAWEVLSDPK 149
           K +Y +LG+ D  A  + IKK +  L + + PD      A+   K   I+EA+EVLSDP+
Sbjct: 3   KDYYKILGV-DRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQ 61

Query: 150 RREAYD 155
           +R  YD
Sbjct: 62  KRRQYD 67

Length = 365

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 88  AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC-SSVGADTANKLINEAWEVLS 146
            AEK+ +Y VLG+    A VD IKK Y      + PD+      A+   K   EA++VLS
Sbjct: 1   MAEKRDYYEVLGV-SKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLS 59

Query: 147 DPKRREAYD 155
           DP +R  YD
Sbjct: 60  DPDKRSRYD 68

Length = 386

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKRRE 152
           +Y +LG+    A  + IKK Y  L   + PD+      A+   K ++EA+EVLSD ++RE
Sbjct: 3   YYTILGV-SKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 153 AYD 155
           +YD
Sbjct: 62  SYD 64

Length = 391

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDR-CSSVGADTANKLINEAWEVLSDPK 149
            K +Y VLG+ +  A  D IKK +  L   + PD+   +  A+   K INEA++VLSDP+
Sbjct: 3   SKDYYEVLGL-EKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQ 61

Query: 150 RREAYD 155
           ++  YD
Sbjct: 62  KKAQYD 67

Length = 380

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151
           + +Y +LG+    A    IK+ Y  L +   PD      A    K I+ A+EVLSDP++R
Sbjct: 3   RDYYGLLGVS-RNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKR 61

Query: 152 EAYDL 156
              DL
Sbjct: 62  RIVDL 66

Length = 378

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
           K+ +Y VLGI D  A    IKK +  L + + PDR  +  A +    INEA +VLS+PK+
Sbjct: 1   KRDYYEVLGI-DRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKK 59

Query: 151 REAYD 155
           R  YD
Sbjct: 60  RANYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC-SSVGADTANKLINEAWEVLSDPK 149
           K+ +Y VLG+    A  D IKK Y  L   + PD+   +  A+   K +NEA+EVLS+  
Sbjct: 2   KRDYYEVLGV-SRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDD 60

Query: 150 RREAYD 155
           +R  YD
Sbjct: 61  KRRRYD 66

Length = 397

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 95  YAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS--SVGADTANKLINEAWEVLSDPKRRE 152
           Y +LG+    A ++ IKK Y  L   + PDR       A+   K INEA+E+LSDP+RR 
Sbjct: 9   YEILGVP-PNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67

Query: 153 AYD 155
            YD
Sbjct: 68  EYD 70

Length = 237

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151
           + +Y +LG+    +  D +KK Y  L + + PD   +  A+   K IN A++VL D ++R
Sbjct: 3   QDYYQILGVSKTASQAD-LKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKR 61

Query: 152 EAYD 155
            AYD
Sbjct: 62  AAYD 65

Length = 372

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKR 150
           K +Y  LG+    A  + IKK Y  L +   PD       A+   K ++EA +VLSDP +
Sbjct: 9   KDFYKELGVSSD-ASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAK 67

Query: 151 REAYD 155
           R+ YD
Sbjct: 68  RKEYD 72

Length = 392

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 91  KKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRC-SSVGADTANKLINEAWEVLSDP 148
           ++ +Y VLG+ RD  A  D IKK Y  L   + PDR   +  A+   K   EA+EVL D 
Sbjct: 3   QRDYYEVLGVSRD--ASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60

Query: 149 KRREAYD 155
           ++R  YD
Sbjct: 61  EKRARYD 67

Length = 373

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 93  SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDR-CSSVGADTANKLINEAWEVLSDPKRR 151
           S+Y +L +  H +  + IKK Y  L   + PDR      A+   KLINEA+ VLSD K+R
Sbjct: 4   SYYEILEVEKH-SNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62

Query: 152 EAYD 155
             YD
Sbjct: 63  ALYD 66

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 95  YAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN------KLINEAWEVLSDP 148
           Y +LGI D       IKKRY  L   F PD+   +  +  +      K I +A+ +L+D 
Sbjct: 101 YEILGI-DQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDK 159

Query: 149 KRREAY 154
           KRRE Y
Sbjct: 160 KRRENY 165

Length = 610

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKR 150
           +S+Y +LG+    A  + IK  Y  L   + PD+   +  ++   K   EA+E+L DPK+
Sbjct: 4   RSYYDILGV-SKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKK 62

Query: 151 REAYD 155
           R+AYD
Sbjct: 63  RQAYD 67

Length = 372

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
           KK +Y VLG+    A    I++ Y  L + + PD   S  A      INEA +VL D  +
Sbjct: 3   KKDYYEVLGV-SKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 151 REAYD 155
           R+ YD
Sbjct: 62  RKQYD 66

Length = 372

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN-KLINEAWEVLSDPKR 150
           +  Y VL +         IKK Y  L     PD+    G D    K I+ A+EVLSDP++
Sbjct: 28  EKLYEVLNLSKD-CTTSEIKKAYRKLAIKHHPDK----GGDPEKFKEISRAYEVLSDPEK 82

Query: 151 REAYD 155
           R+ YD
Sbjct: 83  RKIYD 87

Length = 421

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC-SSVGADTANKLINEAWEVLSDPK 149
           K+ +Y +LG+    A  D IKK Y  +   + PD+   +  A++  K   EA+EVL D  
Sbjct: 2   KRDYYEILGL-SKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDN 60

Query: 150 RREAYD 155
           +R  YD
Sbjct: 61  KRAQYD 66

Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.95
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.92
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.89
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.87
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.86
PRK14288	369	chaperone protein DnaJ; Provisional	99.82
PRK14296	372	chaperone protein DnaJ; Provisional	99.82
PRK14287	371	chaperone protein DnaJ; Provisional	99.8
PRK14298	377	chaperone protein DnaJ; Provisional	99.79
PRK14279	392	chaperone protein DnaJ; Provisional	99.79
PRK14299	291	chaperone protein DnaJ; Provisional	99.79
PRK14291	382	chaperone protein DnaJ; Provisional	99.79
PRK14286	372	chaperone protein DnaJ; Provisional	99.78
PRK14276	380	chaperone protein DnaJ; Provisional	99.78
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.78
PRK14283	378	chaperone protein DnaJ; Provisional	99.78
PRK14285	365	chaperone protein DnaJ; Provisional	99.78
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.77
PRK14282	369	chaperone protein DnaJ; Provisional	99.77
PRK14280	376	chaperone protein DnaJ; Provisional	99.77
PRK14278	378	chaperone protein DnaJ; Provisional	99.77
PRK14301	373	chaperone protein DnaJ; Provisional	99.77
PRK14294	366	chaperone protein DnaJ; Provisional	99.76
PRK14277	386	chaperone protein DnaJ; Provisional	99.76
PRK10767	371	chaperone protein DnaJ; Provisional	99.75
PRK14297	380	chaperone protein DnaJ; Provisional	99.75
PRK14295	389	chaperone protein DnaJ; Provisional	99.75
PRK14284	391	chaperone protein DnaJ; Provisional	99.75
PRK14281	397	chaperone protein DnaJ; Provisional	99.74
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.73
PRK14300	372	chaperone protein DnaJ; Provisional	99.73
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.73
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.73
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.73
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.72
PRK14292	371	chaperone protein DnaJ; Provisional	99.72
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.72
PRK14293	374	chaperone protein DnaJ; Provisional	99.72
PRK14290	365	chaperone protein DnaJ; Provisional	99.72
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.71
PRK14289	386	chaperone protein DnaJ; Provisional	99.71
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.71
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.68
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.66
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PHA03102	153	Small T antigen; Reviewed	99.61
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.61
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.59
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PRK05014	171	hscB co-chaperone HscB; Provisional	99.55
PRK01356	166	hscB co-chaperone HscB; Provisional	99.53
PRK00294	173	hscB co-chaperone HscB; Provisional	99.5
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.49
PRK03578	176	hscB co-chaperone HscB; Provisional	99.49
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.39
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PTZ00100	116	DnaJ chaperone protein; Provisional	99.3
PHA02624	647	large T antigen; Provisional	99.28
PRK01773	173	hscB co-chaperone HscB; Provisional	99.25
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.25
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.17
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.12
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.07
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.01
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.3
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.27
KOG0431	453	consensus Auxilin-like protein and related protein	98.27
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.98
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.71
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.21
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.79
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.23
PF13428	44	TPR_14: Tetratricopeptide repeat	95.96
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.92
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.89
PF13371	73	TPR_9: Tetratricopeptide repeat	95.74
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.4
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.32
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	94.76
KOG4234	271	consensus TPR repeat-containing protein [General f	94.46
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	94.39
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.91
TIGR02552	135	LcrH_SycD type III secretion low calcium response	93.69
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.31
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.27
KOG0553	304	consensus TPR repeat-containing protein [General f	92.75
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.39
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.34
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.16
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.89
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	91.84
PRK15359	144	type III secretion system chaperone protein SscB;	91.53
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	91.37
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	91.15
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	90.88
PRK15359	144	type III secretion system chaperone protein SscB;	90.78
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	90.58
PF13512	142	TPR_18: Tetratricopeptide repeat	90.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	90.56
TIGR02552	135	LcrH_SycD type III secretion low calcium response	90.56
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	90.33
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	90.0
PRK12370	553	invasion protein regulator; Provisional	89.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	89.67
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	89.54
KOG0553	304	consensus TPR repeat-containing protein [General f	89.34
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	89.34
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	89.29
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.27
PRK10370	198	formate-dependent nitrite reductase complex subuni	88.64
PRK11189	296	lipoprotein NlpI; Provisional	88.19
KOG0724	335	consensus Zuotin and related molecular chaperones	87.95
PF13431	34	TPR_17: Tetratricopeptide repeat	87.94
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	87.83
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	87.83
KOG4234	271	consensus TPR repeat-containing protein [General f	87.82
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	87.76
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	86.19
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	85.54
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	85.14
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.03
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	84.41
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	84.19
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	84.12
PF10500	225	SR-25: Nuclear RNA-splicing-associated protein; In	83.21
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	83.18
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	82.92
PF13371	73	TPR_9: Tetratricopeptide repeat	82.66
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	82.6
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	82.42
PF10475	291	DUF2450: Protein of unknown function N-terminal do	82.4
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	81.6
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	81.16
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	80.58

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.95  E-value=2e-27  Score=208.84  Aligned_cols=155  Identities=23%  Similarity=0.257  Sum_probs=143.5

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccc
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGI  100 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv  100 (201)
                      .++|++++.|..|            |++++..++|+.|+.+|++|..+++....++..+.....+......+|||+||||
T Consensus       335 ~~d~~dv~~l~dR------------AeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGV  402 (504)
T KOG0624|consen  335 DIDPDDVQVLCDR------------AEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGV  402 (504)
T ss_pred             hcCchHHHHHHHH------------HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhh
Confidence            4677777777777            9999999999999999999999999999999999988888788899999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCChhHHHHhhccCCCCccccccccCCCCCCc
Q 037661          101 RDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQIQAENQDPEMN  176 (201)
Q Consensus       101 ~~~~as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~~~~~~~~~~~~  176 (201)
                      .+ +|+..||.+|||+++.+||||...+..    |+++|..|..|-+||+||++|+.||.+.++-+...++++++++++.
T Consensus       403 kR-nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~Es~q~GGGg~~Hg  481 (504)
T KOG0624|consen  403 KR-NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDPESQQGGGGGPFHG  481 (504)
T ss_pred             cc-cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCChhhccCCCCCCCCC
Confidence            99 999999999999999999999998766    8999999999999999999999999999998888888888899999


Q ss_pred             ccccCCCCCCCC
Q 037661          177 VVKLENQDPEDN  188 (201)
Q Consensus       177 ~~~~~~~~~~~~  188 (201)
                      ++++-+|.|.-.
T Consensus       482 f~n~hgF~~F~~  493 (504)
T KOG0624|consen  482 FWNEHGFNPFGG  493 (504)
T ss_pred             CccccCCCCCCC
Confidence            999999988654

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.4e-25  Score=197.21  Aligned_cols=73  Identities=40%  Similarity=0.622  Sum_probs=69.3

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT  163 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~  163 (201)
                      ..+|||+||||++ +|+.+|||+|||+||++||||+|+ .+.|+++|++|++||+||+||+||+.||++++....
T Consensus         2 ~~~dyYeiLGV~k-~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSK-DASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            3579999999999 999999999999999999999999 667999999999999999999999999999988765

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.6e-23  Score=182.97  Aligned_cols=74  Identities=34%  Similarity=0.492  Sum_probs=69.4

Q ss_pred             hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661           89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG-ADTANKLINEAWEVLSDPKRREAYDLLMCFDKT  163 (201)
Q Consensus        89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~-a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~  163 (201)
                      ...+|||+||||++ +|+..|||+||||||+++|||||++.. |.+.|+.|+.||+||+||++|+.||.+|..+-.
T Consensus        13 ~~~rDfYelLgV~k-~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~   87 (336)
T KOG0713|consen   13 LAGRDFYELLGVPK-NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK   87 (336)
T ss_pred             hcCCCHHHHhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence            45789999999999 999999999999999999999999877 999999999999999999999999999966544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=7.4e-22  Score=176.51  Aligned_cols=133  Identities=24%  Similarity=0.313  Sum_probs=121.9

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhcc
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLG   99 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLg   99 (201)
                      .-|||.++++|+.|            |++++..++|++|+++++++.++..+ ..++++++.+...+..++.+|||+|||
T Consensus       314 l~iD~syikall~r------------a~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilG  380 (486)
T KOG0550|consen  314 LKIDSSYIKALLRR------------ANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILG  380 (486)
T ss_pred             hhcCHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhh
Confidence            35799999999999            99999999999999999999999988 568899998888878899999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhhccCCCCccccc
Q 037661          100 IRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQI  166 (201)
Q Consensus       100 v~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~~  166 (201)
                      |.+ .++..+|+++||++++.||||++....  ++..|+.|.+||.+|+||.+|..||.+.+..+.+.+
T Consensus       381 i~~-~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~~~  448 (486)
T KOG0550|consen  381 ISR-NASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVGSG  448 (486)
T ss_pred             hhh-hcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhhhcCC
Confidence            999 999999999999999999999998763  899999999999999999999999998876655544

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=4.5e-22  Score=175.24  Aligned_cols=88  Identities=28%  Similarity=0.352  Sum_probs=78.5

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccccccccC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQIQAEN  170 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~~~~~~  170 (201)
                      ...||+||||++ +|+..|||+|||+|+++||||||+.  +.++|++|..||+||+||++|..||++|..+.+..+.+++
T Consensus         3 ~~~~y~il~v~~-~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g   79 (337)
T KOG0712|consen    3 NTKLYDILGVSP-DASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG   79 (337)
T ss_pred             ccccceeeccCC-CcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC
Confidence            457999999999 9999999999999999999999987  6899999999999999999999999999988877666666


Q ss_pred             CCCCCcccccC
Q 037661          171 QDPEMNVVKLE  181 (201)
Q Consensus       171 ~~~~~~~~~~~  181 (201)
                      .+.|.++|+++
T Consensus        80 ~~~f~~~F~~g   90 (337)
T KOG0712|consen   80 FGGFSQFFGFG   90 (337)
T ss_pred             CccHHHhccCC
Confidence            66667777744

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1e-20  Score=169.97  Aligned_cols=69  Identities=38%  Similarity=0.550  Sum_probs=64.7

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .|||+||||++ +|+.++||+|||+||++||||+++. ..|+++|++|++||+||+||.+|+.||++|..+
T Consensus         3 ~dyY~vLgv~~-~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~   72 (369)
T PRK14288          3 LSYYEILEVEK-HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG   72 (369)
T ss_pred             CChHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence            69999999999 9999999999999999999999974 458999999999999999999999999998754

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.2e-20  Score=169.67  Aligned_cols=70  Identities=34%  Similarity=0.488  Sum_probs=66.1

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .+|||+||||++ +|+.++||+|||+||++||||+++.+.|+++|++|++||+||+||++|+.||+++..+
T Consensus         3 ~~dyY~~Lgv~~-~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~   72 (372)
T PRK14296          3 KKDYYEVLGVSK-TASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA   72 (372)
T ss_pred             CCCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence            369999999999 9999999999999999999999987779999999999999999999999999998653

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=1.3e-19  Score=162.88  Aligned_cols=70  Identities=36%  Similarity=0.629  Sum_probs=66.0

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..|||+||||++ +|+.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||+++..+
T Consensus         3 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~   72 (371)
T PRK14287          3 KRDYYEVLGVDR-NASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD   72 (371)
T ss_pred             CCCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence            369999999999 9999999999999999999999987778999999999999999999999999998754

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.2e-19  Score=163.41  Aligned_cols=70  Identities=34%  Similarity=0.567  Sum_probs=66.1

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .+|||+||||++ +|+.++||+|||+|+++||||+++...++++|++|++||+||+||.+|+.||+++..+
T Consensus         4 ~~d~y~iLgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (377)
T PRK14298          4 TRDYYEILGLSK-DASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG   73 (377)
T ss_pred             CCCHHHhhCCCC-CCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence            469999999999 9999999999999999999999987778999999999999999999999999998654

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=9.2e-20  Score=164.95  Aligned_cols=68  Identities=35%  Similarity=0.552  Sum_probs=64.0

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      .+|||+||||++ +|+.++||+|||+|+++||||+++.. .|+++|+.|++||+||+||+||+.||+++.
T Consensus         8 ~~Dyy~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSS-DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            479999999999 99999999999999999999999743 589999999999999999999999999875

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=2.5e-19  Score=156.23  Aligned_cols=70  Identities=41%  Similarity=0.628  Sum_probs=66.0

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..|||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||++|+||.+|+.||+++...
T Consensus         3 ~~d~y~vLgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~   72 (291)
T PRK14299          3 YKDYYAILGVPK-NASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA   72 (291)
T ss_pred             CCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence            369999999999 9999999999999999999999987778999999999999999999999999988753

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=2.4e-19  Score=161.71  Aligned_cols=70  Identities=39%  Similarity=0.600  Sum_probs=66.3

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .+|||+||||++ +|+.++||+|||+|+++||||+++.+.++++|+.|++||+||+||.+|+.||+++..+
T Consensus         2 ~~d~Y~~Lgv~~-~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~   71 (382)
T PRK14291          2 KKDYYEILGVSR-NATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA   71 (382)
T ss_pred             CCCHHHhhCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence            369999999999 9999999999999999999999988778999999999999999999999999998754

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=1.8e-19  Score=162.06  Aligned_cols=70  Identities=33%  Similarity=0.568  Sum_probs=65.1

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..|||+||||++ +|+.++||+|||+|+++||||+++. ..|+++|++|++||+||+||.+|+.||+++..+
T Consensus         3 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (372)
T PRK14286          3 ERSYYDILGVSK-SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG   73 (372)
T ss_pred             CCCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence            369999999999 9999999999999999999999974 458999999999999999999999999998754

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2e-19  Score=162.18  Aligned_cols=70  Identities=37%  Similarity=0.591  Sum_probs=66.4

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .+|||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||+||+||.+|+.||+++..+
T Consensus         3 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~   72 (380)
T PRK14276          3 NTEYYDRLGVSK-DASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG   72 (380)
T ss_pred             CCCHHHhhCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence            369999999999 9999999999999999999999988779999999999999999999999999998754

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.78  E-value=1.9e-19  Score=164.11  Aligned_cols=67  Identities=33%  Similarity=0.457  Sum_probs=62.7

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .+|||+||||++ +|+..+||+|||+||++||||+++.   .++|++|++||+||+||.+|+.||+++..+
T Consensus        27 ~~d~Y~vLGV~~-~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~   93 (421)
T PTZ00037         27 NEKLYEVLNLSK-DCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEG   93 (421)
T ss_pred             chhHHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence            469999999999 9999999999999999999999853   689999999999999999999999998754

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.3e-19  Score=161.58  Aligned_cols=70  Identities=37%  Similarity=0.586  Sum_probs=66.2

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .+|||+||||++ +|+.+|||+|||+|+++||||+++...++++|+.|++||++|+||.+|+.||+++..+
T Consensus         4 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g   73 (378)
T PRK14283          4 KRDYYEVLGVDR-NADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG   73 (378)
T ss_pred             cCChHHhhCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence            579999999999 9999999999999999999999987779999999999999999999999999988654

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.9e-19  Score=159.50  Aligned_cols=69  Identities=32%  Similarity=0.517  Sum_probs=64.5

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      +|||+||||++ +|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|..||+++..+
T Consensus         3 ~d~y~iLgv~~-~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~   72 (365)
T PRK14285          3 RDYYEILGLSK-GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA   72 (365)
T ss_pred             CCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence            69999999999 99999999999999999999998753 48899999999999999999999999998754

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.77  E-value=4.2e-19  Score=121.04  Aligned_cols=62  Identities=42%  Similarity=0.656  Sum_probs=59.9

Q ss_pred             CcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhh
Q 037661           93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYD  155 (201)
Q Consensus        93 d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD  155 (201)
                      |||+||||++ +++.++||++|+++++.+|||++....  +.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~-~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPP-DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTT-TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCC-CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999 999999999999999999999998876  8899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4.6e-19  Score=159.24  Aligned_cols=70  Identities=40%  Similarity=0.652  Sum_probs=64.9

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS--VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .+|||+||||++ +|+.++||+|||+|+++||||+++.  ..|+++|++|++||+||+||.+|+.||+++..+
T Consensus         3 ~~d~y~~lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          3 KKDYYEILGVSR-NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CCChHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            469999999999 9999999999999999999999975  348899999999999999999999999998654

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=5.1e-19  Score=159.32  Aligned_cols=69  Identities=41%  Similarity=0.608  Sum_probs=66.0

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .|||+||||++ +|+.++||+|||+|+++||||+++...++++|++|++||+||+||.+|+.||+++..+
T Consensus         4 ~~~y~iLgv~~-~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   72 (376)
T PRK14280          4 RDYYEVLGVSK-SASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG   72 (376)
T ss_pred             CChHHhhCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence            69999999999 9999999999999999999999988779999999999999999999999999998754

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4.7e-19  Score=159.67  Aligned_cols=68  Identities=34%  Similarity=0.461  Sum_probs=65.0

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCF  160 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~  160 (201)
                      +|||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||+||+||.+|+.||+++..
T Consensus         3 ~d~y~iLgv~~-~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSR-NASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCC-CCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            69999999999 999999999999999999999998777899999999999999999999999998864

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=7.9e-19  Score=157.96  Aligned_cols=70  Identities=36%  Similarity=0.545  Sum_probs=64.8

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..|||+||||++ +|+.++||+|||+|+++||||+++. ..++++|+.|++||+||+||.+|+.||+++..+
T Consensus         3 ~~~~y~~Lgv~~-~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g   73 (373)
T PRK14301          3 QRDYYEVLGVSR-DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG   73 (373)
T ss_pred             CCChHHhcCCCC-CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence            369999999999 9999999999999999999999975 348899999999999999999999999998754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1e-18  Score=156.79  Aligned_cols=70  Identities=39%  Similarity=0.577  Sum_probs=65.3

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .+|||+||||++ +|+..+||+|||+|+++||||+++. +.++++|+.|++||+||+||.+|+.||++|..+
T Consensus         3 ~~d~y~~lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g   73 (366)
T PRK14294          3 KRDYYEILGVTR-DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG   73 (366)
T ss_pred             CCChHHHhCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence            469999999999 9999999999999999999999974 458899999999999999999999999998754

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.1e-18  Score=157.73  Aligned_cols=70  Identities=39%  Similarity=0.610  Sum_probs=65.0

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..|||+||||++ +|+.++||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus         4 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   74 (386)
T PRK14277          4 KKDYYEILGVDR-NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA   74 (386)
T ss_pred             CCCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence            469999999999 9999999999999999999999974 348899999999999999999999999988654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.7e-18  Score=155.54  Aligned_cols=70  Identities=43%  Similarity=0.638  Sum_probs=64.8

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..|||+||||++ +|+.++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||+++..+
T Consensus         3 ~~d~y~iLgv~~-~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~   73 (371)
T PRK10767          3 KRDYYEVLGVSR-NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA   73 (371)
T ss_pred             CCChHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence            469999999999 9999999999999999999999874 348899999999999999999999999988654

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.3e-18  Score=156.75  Aligned_cols=70  Identities=39%  Similarity=0.610  Sum_probs=65.1

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..|||+||||++ +|+.++||+|||+|+++||||+++.. .|+++|+.|++||+||+||.+|+.||+++..+
T Consensus         3 ~~d~y~~Lgv~~-~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~   73 (380)
T PRK14297          3 SKDYYEVLGLEK-GASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD   73 (380)
T ss_pred             CCChHHhhCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence            369999999999 99999999999999999999999753 48999999999999999999999999998754

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.8e-18  Score=156.40  Aligned_cols=68  Identities=38%  Similarity=0.528  Sum_probs=63.4

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhc----cCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDL----LMCF  160 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~----~~~~  160 (201)
                      .|||+||||++ +|+.++||+|||+|+++||||+++.. .++++|+.|++||+||+||.+|+.||+    ++..
T Consensus         9 ~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~   81 (389)
T PRK14295          9 KDYYKVLGVPK-DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNG   81 (389)
T ss_pred             cCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccc
Confidence            69999999999 99999999999999999999998754 489999999999999999999999998    7654

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2e-18  Score=156.18  Aligned_cols=69  Identities=35%  Similarity=0.555  Sum_probs=64.3

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .|||+||||++ +|+.++||+|||+|+++||||+++. ..++++|+.|++||+||+||.+|+.||+++..+
T Consensus         1 ~d~y~iLgv~~-~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   70 (391)
T PRK14284          1 MDYYTILGVSK-TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG   70 (391)
T ss_pred             CCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            38999999999 9999999999999999999999985 348999999999999999999999999998753

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.7e-18  Score=155.58  Aligned_cols=69  Identities=36%  Similarity=0.567  Sum_probs=64.5

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .|||+||||++ +|+.++||+|||+|+++||||+++. ..++++|+.|++||++|+||.+|+.||+++..+
T Consensus         3 ~d~y~iLgv~~-~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~   72 (397)
T PRK14281          3 RDYYEVLGVSR-SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG   72 (397)
T ss_pred             CChhhhcCCCC-CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence            59999999999 9999999999999999999999975 348899999999999999999999999998754

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.73  E-value=4.3e-18  Score=151.99  Aligned_cols=69  Identities=39%  Similarity=0.615  Sum_probs=64.8

Q ss_pred             CcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661           93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK  162 (201)
Q Consensus        93 d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~  162 (201)
                      |||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||++|+||.+|+.||+++..+.
T Consensus         1 d~y~~Lgv~~-~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~   69 (354)
T TIGR02349         1 DYYEILGVSK-DASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF   69 (354)
T ss_pred             ChHHhCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence            7999999999 99999999999999999999999866689999999999999999999999999887543

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=4.3e-18  Score=153.12  Aligned_cols=69  Identities=32%  Similarity=0.523  Sum_probs=65.2

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .|||+||||++ +|+.++||+|||+|+++||||+++...++++|++|++||++|+||.+|+.||+++..+
T Consensus         3 ~~~y~iLgv~~-~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   71 (372)
T PRK14300          3 QDYYQILGVSK-TASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA   71 (372)
T ss_pred             CChHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence            59999999999 9999999999999999999999987678999999999999999999999999988654

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.73  E-value=7.7e-18  Score=147.85  Aligned_cols=67  Identities=37%  Similarity=0.673  Sum_probs=64.1

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      +|||+||||++ +++.++||+|||+|+++||||++....++++|+.|++||++|+||.+|+.||.++.
T Consensus         4 ~d~y~~Lgv~~-~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKP-TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            69999999999 99999999999999999999998877799999999999999999999999999864

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.5e-18  Score=156.69  Aligned_cols=69  Identities=39%  Similarity=0.576  Sum_probs=64.6

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ..++||+||||.+ +++..+||++||+|||+|||||++...  +.++|+.|+.||+|||||..|+.||.+..
T Consensus         6 ~~~c~YE~L~v~~-~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    6 KKRCYYEVLGVER-DADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             hhhHHHHHhcccc-cCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            4568999999999 999999999999999999999987665  89999999999999999999999998876

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=5.2e-18  Score=147.92  Aligned_cols=68  Identities=32%  Similarity=0.524  Sum_probs=66.5

Q ss_pred             CcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        93 d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      |||+||||.+ +|+..|||+||++|++++|||.+....+.++|+.|.+||+||+|+++|..||..+..+
T Consensus        44 d~Y~vLgv~~-~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   44 DYYKVLGVSR-NATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             chhhhhCcCC-CCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            9999999999 9999999999999999999999999999999999999999999999999999999866

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=5.3e-18  Score=153.34  Aligned_cols=72  Identities=35%  Similarity=0.502  Sum_probs=67.6

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSDPKRREAYDLLMCFDKT  163 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~  163 (201)
                      +.|||.+|+|++ +||.+||++|||++++.+||||+.++.    |++.|++|.+||+||+||++|+.||.+|.++-.
T Consensus         8 e~e~Ya~LNlpk-dAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    8 EIELYALLNLPK-DATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhhHHHHhCCCc-ccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            458999999999 999999999999999999999998776    999999999999999999999999999987744

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=7.2e-18  Score=151.52  Aligned_cols=69  Identities=36%  Similarity=0.554  Sum_probs=65.6

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .|||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||+||+||.+|+.||+++..+
T Consensus         2 ~d~y~~Lgv~~-~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSR-TASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            48999999999 9999999999999999999999987779999999999999999999999999998754

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=5.6e-18  Score=144.38  Aligned_cols=72  Identities=35%  Similarity=0.499  Sum_probs=66.4

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV  164 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~  164 (201)
                      .|+|+||||++ +++.++|||+||+|++++|||+++. +.+..+|++||+||++|+||.+|..||.+|..+-..
T Consensus        31 ~~LYdVLgl~k-~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   31 LDLYDVLGLPK-TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             hHHHHHhCCCc-ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            48999999999 9999999999999999999999988 558999999999999999999999999998655443

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=9.8e-18  Score=150.88  Aligned_cols=69  Identities=36%  Similarity=0.587  Sum_probs=65.6

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .|||+||||++ +|+..+||+|||+|+++||||+++...++++|+.|++||+||+||.+|+.||.++..+
T Consensus         3 ~d~y~vLgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g   71 (374)
T PRK14293          3 ADYYEILGVSR-DADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAG   71 (374)
T ss_pred             CChhhhcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence            59999999999 9999999999999999999999987779999999999999999999999999988653

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=1.1e-17  Score=150.15  Aligned_cols=69  Identities=38%  Similarity=0.601  Sum_probs=64.6

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--GADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .|||+||||++ +|+..+||+|||+|+++||||+++..  .|+++|+.|++||++|+||.+|+.||+++..+
T Consensus         3 ~d~y~vLgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~   73 (365)
T PRK14290          3 KDYYKILGVDR-NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD   73 (365)
T ss_pred             CChhhhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence            59999999999 99999999999999999999999754  48899999999999999999999999998754

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.71  E-value=4.3e-18  Score=164.93  Aligned_cols=73  Identities=25%  Similarity=0.365  Sum_probs=67.9

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT  163 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~  163 (201)
                      ...+||+||||++ +|+..+||+|||+||++||||+++...|.++|+.|++||+||+||.+|+.||.+|..+..
T Consensus       571 ~d~dYYdILGVs~-dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        571 PDTLFYDILGVGV-NADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             CCCChHHHcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            4569999999999 999999999999999999999998777899999999999999999999999999976533

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.4e-17  Score=150.32  Aligned_cols=70  Identities=37%  Similarity=0.572  Sum_probs=65.1

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..|||+||||++ +|+.+|||+|||+|+++||||+++.. .++++|+.|++||++|+||.+|+.||+++..+
T Consensus         4 ~~~~y~~Lgv~~-~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          4 KRDYYEVLGVSK-TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             cCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            469999999999 99999999999999999999999754 48999999999999999999999999988653

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=5.4e-18  Score=147.72  Aligned_cols=74  Identities=34%  Similarity=0.466  Sum_probs=69.2

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHcCChhHHHHhhccCCCCcccc
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG-ADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQ  165 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~-a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~  165 (201)
                      ..|||.||||.. +++..+|+++||+.+++||||||++.. |.+.|+.|.+||+||+|+.+|..||..+..+...+
T Consensus         4 ~~dyY~lLgi~~-~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    4 DTDYYDLLGISE-DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             cchHHHHhCCCC-CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            569999999999 999999999999999999999998876 99999999999999999999999999998766554

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.68  E-value=8.3e-17  Score=107.98  Aligned_cols=57  Identities=42%  Similarity=0.681  Sum_probs=53.4

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC--CchHHHHHHHHHHHHHHcCChh
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS--SVGADTANKLINEAWEVLSDPK  149 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~--~~~a~~~f~~i~~Ay~vLsdp~  149 (201)
                      +|||+||||++ +++.++||++|+++++.+|||++.  ...+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~-~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPR-DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999 999999999999999999999998  4558999999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.66  E-value=2e-16  Score=104.21  Aligned_cols=54  Identities=41%  Similarity=0.621  Sum_probs=51.4

Q ss_pred             CcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCC
Q 037661           93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSD  147 (201)
Q Consensus        93 d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd  147 (201)
                      |||+||||++ +++.++||++|++|++.+|||++.. ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~-~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPP-DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6999999999 9999999999999999999999987 5689999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.8e-16  Score=132.72  Aligned_cols=72  Identities=31%  Similarity=0.475  Sum_probs=65.3

Q ss_pred             hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch---HHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG---ADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~---a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..++|.|+||||.+ +|+..+|++||++|+++||||+++...   +.+.|+.|+.||.||+|.++|+.||..|...
T Consensus        11 f~~~d~YevLGVer-~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   11 FNKKDLYEVLGVER-DATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccccCHHHHhhhcc-cCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            34569999999999 999999999999999999999995322   8999999999999999999999999988655

>PHA03102 Small T antigen; Reviewed

Probab=99.61  E-value=6.6e-16  Score=123.08  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             cCcchhccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661           92 KSWYAVLGIRDHRA--GVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV  164 (201)
Q Consensus        92 ~d~Y~vLgv~~~~a--s~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~  164 (201)
                      ..+|+||||++ +|  +..+||+|||++++++|||+++.   .++|+.|++||++|+|+.+|..||.++......
T Consensus         5 ~~l~~vLGl~~-~A~~s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~   75 (153)
T PHA03102          5 KELMDLLGLPR-SAWGNLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE   75 (153)
T ss_pred             HHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence            35799999999 99  99999999999999999999643   689999999999999999999999999766443

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.61  E-value=1.3e-15  Score=145.16  Aligned_cols=70  Identities=37%  Similarity=0.521  Sum_probs=65.7

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK  162 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~  162 (201)
                      +|||+||||++ +|+..+||++||+|+++||||++....+.++|+.|++||++|+||.+|+.||.++..+.
T Consensus         2 ~DYYeVLGVs~-dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDR-DADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            59999999999 99999999999999999999999887788999999999999999999999999886543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2e-15  Score=122.44  Aligned_cols=67  Identities=40%  Similarity=0.676  Sum_probs=63.2

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhhcc
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYDLL  157 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD~~  157 (201)
                      ...+||+||||++ +++..+|+++||++++++|||+++...  +.+.|+.|++||++|+|+.+|..||..
T Consensus         4 ~~~~~y~iLgv~~-~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPP-NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            3469999999999 999999999999999999999998775  789999999999999999999999986

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=3.8e-15  Score=123.60  Aligned_cols=72  Identities=29%  Similarity=0.406  Sum_probs=66.3

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT  163 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~  163 (201)
                      .-|+|+||||++ +++..|||+|||+|++++||||++. .+.++.|..|++||..|+|+..|..|..+|+.+..
T Consensus        98 ~fDPyEILGl~p-gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp  170 (230)
T KOG0721|consen   98 KFDPYEILGLDP-GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP  170 (230)
T ss_pred             cCCcHHhhCCCC-CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence            449999999999 9999999999999999999999987 44788899999999999999999999999987654

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.55  E-value=9.9e-15  Score=118.53  Aligned_cols=67  Identities=25%  Similarity=0.556  Sum_probs=59.2

Q ss_pred             cCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           92 KSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        92 ~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      .|||+||||++ .  ++..+|+++||++++++|||++....      +.+.|..||+||++|+||.+|+.|+....
T Consensus         1 ~~yf~llgl~~-~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~   75 (171)
T PRK05014          1 MDYFTLFGLPA-RYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH   75 (171)
T ss_pred             CCHHHHCCCCC-CCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence            38999999998 6  67899999999999999999986543      56789999999999999999999986544

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.53  E-value=2e-14  Score=116.28  Aligned_cols=67  Identities=22%  Similarity=0.504  Sum_probs=58.8

Q ss_pred             cCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           92 KSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        92 ~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      .|||+||||++ .  ++..+|+++||+|++++|||++....    +...+..||+||+||+||.+|+.|+....
T Consensus         2 ~~yf~llgl~~-~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~   74 (166)
T PRK01356          2 QNYFQLLGLPQ-EYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ   74 (166)
T ss_pred             CCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            48999999998 6  78999999999999999999987543    33457899999999999999999987664

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.50  E-value=5.6e-14  Score=114.29  Aligned_cols=69  Identities=26%  Similarity=0.466  Sum_probs=61.2

Q ss_pred             hccCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           90 EKKSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      +..|||++|||++ .  .+..+|+++||+|++++|||++....      +.+.|..||+||.||+||.+|+.|+....
T Consensus         2 ~~~~~F~l~~l~~-~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~   78 (173)
T PRK00294          2 GTPCHFALFDLQP-SFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS   78 (173)
T ss_pred             CCCChhhhcCcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            3579999999998 6  66899999999999999999986644      56789999999999999999999997654

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.7e-14  Score=129.28  Aligned_cols=71  Identities=28%  Similarity=0.398  Sum_probs=67.1

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      +.+|+|.||||+. +++.++|||.||++|..+|||||..+.|++.|+.|..||++|+|+++|..||......
T Consensus       233 ~~~daYsvlGl~~-d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke  303 (490)
T KOG0720|consen  233 NILDAYSALGLPS-DCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE  303 (490)
T ss_pred             cCCCchhhcCCCC-CCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            3679999999999 9999999999999999999999999999999999999999999999999999877544

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.49  E-value=6.5e-14  Score=114.24  Aligned_cols=68  Identities=26%  Similarity=0.462  Sum_probs=58.7

Q ss_pred             ccCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           91 KKSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ..|||+||||++ .  ++..+|+++||+|++++|||++....      +.+.+..||+||.+|+||.+|+.|.....
T Consensus         5 ~~dyf~llglp~-~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~   80 (176)
T PRK03578          5 KDDHFSLFGLPA-RFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR   80 (176)
T ss_pred             CCCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence            369999999998 5  67899999999999999999987544      34456899999999999999999996444

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=2.6e-13  Score=115.08  Aligned_cols=71  Identities=41%  Similarity=0.551  Sum_probs=64.7

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--GADTANKLINEAWEVLSDPKRREAYDLLMCFDK  162 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~  162 (201)
                      ..|||+||||.+ .++..+|++||++++++||||+++..  .++.+|++|.+||++|+||.+|..||+++....
T Consensus         2 ~~d~~~~l~i~~-~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~   74 (306)
T KOG0714|consen    2 GKDYYKILGIAR-SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL   74 (306)
T ss_pred             cccHHHHhCccc-cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence            358999999999 99999999999999999999998877  466689999999999999999999999998333

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.4e-13  Score=115.46  Aligned_cols=71  Identities=28%  Similarity=0.417  Sum_probs=66.1

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ...|.|+||||.+ .++..+|.++||+|++++|||+++++.+.+.|+.|..||++|.|.+.|..||-..+..
T Consensus        31 G~enCYdVLgV~R-ea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp  101 (329)
T KOG0722|consen   31 GAENCYDVLGVAR-EANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHP  101 (329)
T ss_pred             cchhHHHHhhhhh-hccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence            4569999999999 9999999999999999999999999998999999999999999999999999766543

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.30  E-value=3.7e-12  Score=97.08  Aligned_cols=51  Identities=24%  Similarity=0.293  Sum_probs=47.0

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLS  146 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLs  146 (201)
                      .++|+||||++ +++.++|+++||+|++++|||+..   ..+.|++|++||++|.
T Consensus        65 ~eAy~ILGv~~-~As~~eIkkaYRrLa~~~HPDkgG---s~~~~~kIneAyevL~  115 (116)
T PTZ00100         65 SEAYKILNISP-TASKERIREAHKQLMLRNHPDNGG---STYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHcCCCC-CCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHh
Confidence            48999999999 999999999999999999999853   3689999999999985

>PHA02624 large T antigen; Provisional

Probab=99.28  E-value=1.1e-11  Score=116.99  Aligned_cols=60  Identities=18%  Similarity=0.336  Sum_probs=56.4

Q ss_pred             ccCcchhccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHh
Q 037661           91 KKSWYAVLGIRDHRA--GVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAY  154 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~a--s~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~Y  154 (201)
                      ..++|+||||++ +|  +..+||+|||++++++|||++.   +.+.|+.|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~-~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPM-AAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            458999999999 99  9999999999999999999964   378999999999999999999999

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.25  E-value=1.6e-11  Score=99.95  Aligned_cols=68  Identities=21%  Similarity=0.331  Sum_probs=59.9

Q ss_pred             cCcchhccccCC-CCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           92 KSWYAVLGIRDH-RAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        92 ~d~Y~vLgv~~~-~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      .|||++|||++. ..+...++++|++|.+.+|||+....+      +.+....||+||.+|+||.+|+.|=....
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            589999999981 388999999999999999999987665      56678999999999999999999986554

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.25  E-value=6.8e-12  Score=108.49  Aligned_cols=55  Identities=25%  Similarity=0.429  Sum_probs=50.1

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------hHHHHHHHHHHHHHHcCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--------GADTANKLINEAWEVLSD  147 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--------~a~~~f~~i~~Ay~vLsd  147 (201)
                      .++|+||||++ +++.++||++||+|+++||||+..+.        .++++|+.|++||++|+.
T Consensus       200 ~~ay~vLgv~~-~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        200 EDAYKVLGVSE-SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HhHHHHcCCCC-CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            49999999999 99999999999999999999997542        278999999999999974

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.1e-11  Score=106.24  Aligned_cols=107  Identities=31%  Similarity=0.325  Sum_probs=80.2

Q ss_pred             hhhccCcchhccccCC--CCCHHHHHHHHHHHHHhhCCCCCCCch---HHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661           88 AAEKKSWYAVLGIRDH--RAGVDVIKKRYEALVQLFKPDRCSSVG---ADTANKLINEAWEVLSDPKRREAYDLLMCFDK  162 (201)
Q Consensus        88 ~~~~~d~Y~vLgv~~~--~as~~eIkkaYrkla~~~HPDk~~~~~---a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~  162 (201)
                      .++..|+|.+|||+.+  .+++.+|.++.++.+.+||||+....+   ..+.|+.|..||+||+|+.+|..||.......
T Consensus        39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ad  118 (379)
T COG5269          39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDAD  118 (379)
T ss_pred             hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccC
Confidence            5677899999999943  688999999999999999999984433   78999999999999999999999998776555


Q ss_pred             cccccccCCCCCCcccccCCCCCCCCCC---CCCCCCCCC
Q 037661          163 TVQIQAENQDPEMNVVKLENQDPEDNND---DKPKPKPSL  199 (201)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ps~  199 (201)
                      ..++.......|.+.|.     |-+...   ..-||-|||
T Consensus       119 vppp~~~t~~~Ffe~w~-----pvFe~earFSkKqPvPsL  153 (379)
T COG5269         119 VPPPRIYTPDEFFEVWE-----PVFEREARFSKKQPVPSL  153 (379)
T ss_pred             CCCccCCCchhHHHHHH-----HHHHhhhhccccCCCCCC
Confidence            55444444444444433     221111   245677776

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.12  E-value=7.9e-11  Score=106.94  Aligned_cols=73  Identities=33%  Similarity=0.426  Sum_probs=66.6

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV  164 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~  164 (201)
                      .=|+|+||||.. +++..+||++||+|+.++||||.+.-.      -++.++.|++||..|+|...|+.|-.+|+++.++
T Consensus        97 ~fDPyEILGI~~-~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ  175 (610)
T COG5407          97 GFDPYEILGIDQ-DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ  175 (610)
T ss_pred             CCChHHhhcccC-CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence            349999999999 999999999999999999999987722      7889999999999999999999999999877654

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.07  E-value=3e-10  Score=91.09  Aligned_cols=56  Identities=27%  Similarity=0.476  Sum_probs=49.7

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661          104 RAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus       104 ~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ..+..+|+++||+|++++|||++...+      +...|..||+||++|+||.+|+.|.....
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            457889999999999999999975543      67889999999999999999999998765

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=6.7e-10  Score=91.65  Aligned_cols=64  Identities=28%  Similarity=0.385  Sum_probs=58.8

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhh
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYD  155 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD  155 (201)
                      +-|+|+||.|.+ ..+.++||+.||+|++.+|||||+...  |..+|-.|.+||..|-|+..|..-+
T Consensus        52 nLNpfeVLqIdp-ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   52 NLNPFEVLQIDP-EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             ccChHHHHhcCC-CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            459999999999 999999999999999999999999875  9999999999999999999665544

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=9.5e-07  Score=74.80  Aligned_cols=60  Identities=22%  Similarity=0.381  Sum_probs=53.4

Q ss_pred             hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHH-HcCChh
Q 037661           89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWE-VLSDPK  149 (201)
Q Consensus        89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~-vLsdp~  149 (201)
                      ..-..||.||||.. +|+..+|+.+|.+|++.+|||-.......+.|.+|.+||. ||....
T Consensus        44 e~~~e~fril~v~e-~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~  104 (342)
T KOG0568|consen   44 EKIMECFRILGVEE-GADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKF  104 (342)
T ss_pred             HHHHHHHHHhcccc-cCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            34458999999999 9999999999999999999999988878899999999999 776443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2e-06  Score=85.25  Aligned_cols=52  Identities=21%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             CcchhccccCC---CCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcC
Q 037661           93 SWYAVLGIRDH---RAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLS  146 (201)
Q Consensus        93 d~Y~vLgv~~~---~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLs  146 (201)
                      +-|+||.|+-.   ...++.||++|++|+.+||||||+..  .+.|..|++||+.|.
T Consensus      1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG--RemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG--REMFERVNKAYELLS 1336 (2235)
T ss_pred             HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHHHH
Confidence            78999999841   34458899999999999999999765  799999999999998

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=98.27  E-value=3.9e-06  Score=77.72  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=76.7

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCchhHHhhHHHHHHHHHhhhccCcchhcccc
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRAR-MKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIR  101 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~  101 (201)
                      -+..+.....+.+.++ ..-.++|+..-  .........-.+.. ........|+.||..|+..  .+.... |+=++|.
T Consensus       324 ~~~~~~~~~~~~~~d~-k~~~~~ae~~~--e~~r~~e~~d~~I~~W~~GKE~NIRALLSTLh~V--LW~es~-WqpVslt  397 (453)
T KOG0431|consen  324 FSDLLNPQGFKSTSDE-KRPREIAEMRK--ELSRLMEPLDEEIRRWSEGKEGNIRALLSTLHYV--LWPESG-WQPVSLT  397 (453)
T ss_pred             hhhhhccccccchhhh-hhHHHHHHHHH--HHHhhcchHHHHHHHhcccccccHHHHHHHHhHh--hcCccC-cccCchh
Confidence            3444444445555555 55556665521  00011111112222 3344557799999999977  344444 5666898


Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCCCCCch--------HHHHHHHHHHHHHHcC
Q 037661          102 DHRAGVDVIKKRYEALVQLFKPDRCSSVG--------ADTANKLINEAWEVLS  146 (201)
Q Consensus       102 ~~~as~~eIkkaYrkla~~~HPDk~~~~~--------a~~~f~~i~~Ay~vLs  146 (201)
                      . -.+..+||++|||.+|.+||||.+..+        +++.|-.+++||....
T Consensus       398 D-LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  398 D-LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             h-ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            8 999999999999999999999998885        7788888888887543

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=1.4e-05  Score=59.82  Aligned_cols=49  Identities=29%  Similarity=0.333  Sum_probs=43.4

Q ss_pred             hhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCCh
Q 037661           96 AVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP  148 (201)
Q Consensus        96 ~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp  148 (201)
                      .||||.+ +++.+.||.++|++.+..|||+...+   -.-..||||+++|...
T Consensus        60 lIL~v~~-s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   60 LILGVTP-SLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT  108 (112)
T ss_pred             HHhCCCc-cccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence            4899999 99999999999999999999999886   4445799999999753

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=4.7e-05  Score=60.76  Aligned_cols=71  Identities=23%  Similarity=0.423  Sum_probs=56.4

Q ss_pred             hhccCcchhccccCC-CCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           89 AEKKSWYAVLGIRDH-RAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        89 ~~~~d~Y~vLgv~~~-~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ....+||.++|.... ...++.+..-|.-...++|||+...+.      |.+....|++||.+|.||-+|+.|=....
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~   82 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK   82 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            345689999987631 455666776899999999999954433      88899999999999999999999975543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0022  Score=52.11  Aligned_cols=53  Identities=32%  Similarity=0.467  Sum_probs=47.4

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--------HHHHHHHHHHHHHHc
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--------ADTANKLINEAWEVL  145 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--------a~~~f~~i~~Ay~vL  145 (201)
                      .+.|.+||+.. .....+|+++|+++....|||+....+        +.+.++.|++||+-+
T Consensus       113 ~~~l~~l~~~~-~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEI-KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCch-hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            58999999999 999999999999999999999976655        888889999998754

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0031  Score=57.32  Aligned_cols=54  Identities=15%  Similarity=0.158  Sum_probs=49.1

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      +.++|+|++||++|            +++++..|+|+.|+.++++|+.+.|....++.-+..|...
T Consensus       284 Le~~~~N~KALyRr------------G~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  284 LELDPNNVKALYRR------------GQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HhcCCCchhHHHHH------------HHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45799999999999            9999999999999999999999999998888777776654

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.0017  Score=52.79  Aligned_cols=67  Identities=25%  Similarity=0.482  Sum_probs=52.2

Q ss_pred             CcchhccccCC-CCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           93 SWYAVLGIRDH-RAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        93 d~Y~vLgv~~~-~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ||+..+|..+. ....+.++..|+.+.+.+|||+....+      +.+.+..++.||.+|.||.+|..|=.-..
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            45555666540 223556889999999999999987766      55678999999999999999999975544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.23  E-value=0.017  Score=33.15  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      |+-+..+|..++..|++++|+..++++.+++|+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3455667999999999999999999999999963

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.96  E-value=0.022  Score=35.31  Aligned_cols=39  Identities=18%  Similarity=0.104  Sum_probs=33.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      +...|..+...|++++|++.++++.+.+|....+...+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            456699999999999999999999999999976655443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.92  E-value=0.14  Score=47.63  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=41.2

Q ss_pred             cCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           17 SSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        17 ~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      ......+|++..++...            +..++..|+|++|+..+++|..++|+...
T Consensus        65 ~~~~~~dP~~a~a~~NL------------G~AL~~lGryeEAIa~f~rALeL~Pd~ae  110 (453)
T PLN03098         65 KDGSEADVKTAEDAVNL------------GLSLFSKGRVKDALAQFETALELNPNPDE  110 (453)
T ss_pred             CCCccCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCchH
Confidence            34445899999999999            99999999999999999999999999864

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.89  E-value=0.029  Score=32.41  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPN   71 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~   71 (201)
                      +-+..+|..++..|+++.|+..+.+|.+++|.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            44566799999999999999999999999996

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.74  E-value=0.027  Score=37.88  Aligned_cols=47  Identities=21%  Similarity=0.261  Sum_probs=36.8

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      .++|+++..+..+            |..++..|++.+|+..+.++..+.|+...+..+.
T Consensus        23 ~~~p~~~~~~~~~------------a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen   23 ELDPDDPELWLQR------------ARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HhCcccchhhHHH------------HHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            3566667777666            9999999999999999999999999876554443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.40  E-value=0.025  Score=37.69  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=27.7

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEE-KIDSALCVVDRARMKNP   70 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~-d~~~A~~~~~~a~~~~p   70 (201)
                      +||++..++..+            |..++..| ++.+|+.+++++..++|
T Consensus        32 ~~p~~~~~~~~~------------g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   32 LDPNNAEAYYNL------------GLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HSTTHHHHHHHH------------HHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             cCCCCHHHHHHH------------HHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            466666666666            88888887 68888888888887776

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.36  E-value=0.031  Score=37.00  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      |..+++.|++++|...+.++...+|....+..++.
T Consensus        32 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen   32 AQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            77777777777777777777777777655554443

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.32  E-value=0.056  Score=35.62  Aligned_cols=39  Identities=26%  Similarity=0.481  Sum_probs=31.1

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      .+|++.+++...            |..++..|++++|+..++++..++|..
T Consensus        26 ~~P~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen   26 QDPDNPEAWYLL------------GRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             CSTTHHHHHHHH------------HHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            457777777777            999999999999999999999988875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=94.76  E-value=0.07  Score=35.45  Aligned_cols=44  Identities=18%  Similarity=0.232  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      |+.+...|..++..|+|+.|+..+.++..++|....+-..+..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~   46 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLA   46 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            56677779999999999999999999999999987655444443

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.46  E-value=0.062  Score=45.45  Aligned_cols=69  Identities=16%  Similarity=0.063  Sum_probs=48.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH----HhhhccCcchhccccCCCCCHHHHHHHHHHHHH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK----LAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQ  119 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~----~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~  119 (201)
                      |.+.++.+.|+.|+..+.+|..++|+...+  +.+....+-    ....-.||-+||.+.|   +..+.+++-++|-.
T Consensus       141 aaa~iKl~k~e~aI~dcsKaiel~pty~kA--l~RRAeayek~ek~eealeDyKki~E~dP---s~~ear~~i~rl~~  213 (271)
T KOG4234|consen  141 AAALIKLRKWESAIEDCSKAIELNPTYEKA--LERRAEAYEKMEKYEEALEDYKKILESDP---SRREAREAIARLPP  213 (271)
T ss_pred             HHHHHHhhhHHHHHHHHHhhHhcCchhHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHhCc---chHHHHHHHHhcCH
Confidence            888999999999999999999999987533  223222221    1122348999999988   56666666665443

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=94.39  E-value=0.097  Score=40.66  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=38.7

Q ss_pred             chhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHH
Q 037661           95 YAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR  151 (201)
Q Consensus        95 Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR  151 (201)
                      ..||||++ ..+.++|.+.|.+|-...+|++...   .-.-..|..|.+.|....+.
T Consensus        61 ~~ILnv~~-~~~~eeI~k~y~~Lf~~Nd~~kGGS---fYLQSKV~rAKErl~~El~~  113 (127)
T PF03656_consen   61 RQILNVKE-ELSREEIQKRYKHLFKANDPSKGGS---FYLQSKVFRAKERLEQELKE  113 (127)
T ss_dssp             HHHHT--G---SHHHHHHHHHHHHHHT-CCCTS----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCC-ccCHHHHHHHHHHHHhccCCCcCCC---HHHHHHHHHHHHHHHHHHHH
Confidence            68999999 9999999999999999999998755   56666788888888755433

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.91  E-value=0.14  Score=28.76  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661           41 ASKHMAEELFKEEKIDSALCVVDRARMKNPN   71 (201)
Q Consensus        41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~   71 (201)
                      ....+|..++..|++++|+..++++...+|.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3456799999999999999999999999996

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=93.69  E-value=1.3  Score=32.84  Aligned_cols=54  Identities=19%  Similarity=0.195  Sum_probs=42.8

Q ss_pred             ccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           16 LSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        16 ~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      +.....++|++..++...            |..++..|++++|+..+.++..++|....+...+..
T Consensus         6 ~~~~l~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~   59 (135)
T TIGR02552         6 LKDLLGLDSEQLEQIYAL------------AYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAA   59 (135)
T ss_pred             HHHHHcCChhhHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            444556778888777777            999999999999999999999999987655544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.31  E-value=0.2  Score=28.56  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPN   71 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~   71 (201)
                      .-+..++..+...|+++.|+..+.++.++.|.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            44667799999999999999999999999883

...

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.27  E-value=0.71  Score=30.32  Aligned_cols=44  Identities=14%  Similarity=-0.017  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      +--+|..+++.|+|..|++++..+.++.|....+..+...++-.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~   47 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK   47 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            34568999999999999999999999999998887777766544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.75  E-value=0.23  Score=43.89  Aligned_cols=42  Identities=14%  Similarity=0.063  Sum_probs=31.7

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      +.++|++.--+..|            |.+|.+.|.++.|+.++++|..++|..-
T Consensus       108 I~l~P~nAVyycNR------------AAAy~~Lg~~~~AVkDce~Al~iDp~ys  149 (304)
T KOG0553|consen  108 IELDPTNAVYYCNR------------AAAYSKLGEYEDAVKDCESALSIDPHYS  149 (304)
T ss_pred             HhcCCCcchHHHHH------------HHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence            45677777777777            7777888888888888888888877653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.39  E-value=1.5  Score=33.49  Aligned_cols=52  Identities=19%  Similarity=0.240  Sum_probs=38.6

Q ss_pred             HHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           29 ALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        29 ~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      ....++...-...+...++.++..|+++.|++.+.++..++|..+.+...+-
T Consensus        52 ~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm  103 (146)
T PF03704_consen   52 PERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLM  103 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3444444555567777888899999999999999999999999976654443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=92.34  E-value=0.36  Score=43.29  Aligned_cols=48  Identities=15%  Similarity=0.090  Sum_probs=33.1

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      .++|++..++..+            |..++..|+++.|+.++.+|..++|....+...+.
T Consensus        30 ~~~P~~~~a~~~~------------a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg   77 (356)
T PLN03088         30 DLDPNNAELYADR------------AQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG   77 (356)
T ss_pred             HhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            4577777777777            77777777777777777777777776654443333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.16  E-value=1.8  Score=31.31  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      +.....+..|..++..|++++|+..+..+.+.++..
T Consensus        20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen   20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            333444455999999999999999999999988876

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.89  E-value=0.44  Score=28.17  Aligned_cols=28  Identities=7%  Similarity=0.050  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKN   69 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~   69 (201)
                      +..+|..+...|+|++|+.+++++..+.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4568999999999999999999966543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=91.84  E-value=1.3  Score=39.63  Aligned_cols=40  Identities=23%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      .++..|..++..|+|+.|+..|.+|.+++|....+...+.
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a   43 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRA   43 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4666799999999999999999999999998865544433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=91.53  E-value=0.69  Score=35.83  Aligned_cols=49  Identities=14%  Similarity=0.086  Sum_probs=40.3

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      ..++|.+..++...            |..+.+.|++++|+..|.++..++|........+.
T Consensus        51 l~~~P~~~~a~~~l------------g~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         51 VMAQPWSWRAHIAL------------AGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             HHcCCCcHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            35789999999888            99999999999999999999999998755443333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=91.37  E-value=0.41  Score=31.33  Aligned_cols=40  Identities=15%  Similarity=0.305  Sum_probs=33.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV   83 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   83 (201)
                      ..|..++..|++++|+..++++...+|....+...+..+.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~   41 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRIL   41 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            4589999999999999999999999999876655555444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=91.15  E-value=5.3  Score=32.14  Aligned_cols=27  Identities=11%  Similarity=0.099  Sum_probs=15.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      |-.++..|++++|.++++-+..++|..
T Consensus        42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~   68 (157)
T PRK15363         42 AMQLMEVKEFAGAARLFQLLTIYDAWS   68 (157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            555555555555555555555555544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=90.88  E-value=0.32  Score=44.21  Aligned_cols=84  Identities=15%  Similarity=0.191  Sum_probs=58.5

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH--HHhhhccCcchhc
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH--KLAAEKKSWYAVL   98 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~--~~~~~~~d~Y~vL   98 (201)
                      ..||++..++++|            |..+|.+|.-..|+.++.++.++-|..-+++.....+...  .+.....||-.||
T Consensus        66 e~dp~~Y~aifrR------------aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl  133 (504)
T KOG0624|consen   66 EGDPNNYQAIFRR------------ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL  133 (504)
T ss_pred             cCCchhHHHHHHH------------HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence            4689999999999            9999999999999999999999999875444322221111  1122344888888


Q ss_pred             cccCCCCCHHHHHHHHHHHHH
Q 037661           99 GIRDHRAGVDVIKKRYEALVQ  119 (201)
Q Consensus        99 gv~~~~as~~eIkkaYrkla~  119 (201)
                      .-.+   +......++-+|++
T Consensus       134 ~~~~---s~~~~~eaqskl~~  151 (504)
T KOG0624|consen  134 QHEP---SNGLVLEAQSKLAL  151 (504)
T ss_pred             hcCC---CcchhHHHHHHHHh
Confidence            7655   66666666666554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=90.78  E-value=0.65  Score=36.01  Aligned_cols=35  Identities=14%  Similarity=0.062  Sum_probs=29.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      +..++..|++++|+..+.++..+.|........+.
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg   65 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALA   65 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            88899999999999999999999998855543333

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.58  E-value=0.69  Score=40.32  Aligned_cols=52  Identities=12%  Similarity=0.081  Sum_probs=43.2

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH-HhhHHHHH
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL-NSHFACYV   83 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~-~~~l~~~~   83 (201)
                      ...+|.|++||++|            |.++....+.++|.+++.++.+++|....+ ++-++.++
T Consensus       257 L~~~~~nvKA~frR------------akAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le  309 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRR------------AKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLE  309 (329)
T ss_pred             HhcCCchHHHHHHH------------HHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence            45689999999999            999999999999999999999999988543 34444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=90.57  E-value=1.8  Score=34.26  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=24.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      .++++..++..++++.|+.-+.+-.+++|+.+.+
T Consensus        50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            3556777777777777777777777777777544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=90.56  E-value=0.74  Score=37.80  Aligned_cols=27  Identities=15%  Similarity=0.160  Sum_probs=13.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      |..++..|++++|+..++++..+.|..
T Consensus       151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        151 ASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            444455555555555555555544443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=90.56  E-value=1.1  Score=33.28  Aligned_cols=49  Identities=14%  Similarity=0.026  Sum_probs=36.8

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      ++|++..++...            |..++..|+++.|+..+.++..++|........+..+
T Consensus        46 ~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~   94 (135)
T TIGR02552        46 YDPYNSRYWLGL------------AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC   94 (135)
T ss_pred             hCCCcHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            567777777777            8888888888888888888888888775555444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.33  E-value=2.5  Score=40.12  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=64.4

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH----HHhhhccCcch
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH----KLAAEKKSWYA   96 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~----~~~~~~~d~Y~   96 (201)
                      -.||++...+..|            |-+++..+.+..|+++++++.+++|....  ..++...++    .....-..|++
T Consensus       386 kr~P~Da~lYsNR------------Aac~~kL~~~~~aL~Da~~~ieL~p~~~k--gy~RKg~al~~mk~ydkAleay~e  451 (539)
T KOG0548|consen  386 KRDPEDARLYSNR------------AACYLKLGEYPEALKDAKKCIELDPNFIK--AYLRKGAALRAMKEYDKALEAYQE  451 (539)
T ss_pred             hcCCchhHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCchHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466666666666            77777777777777777777777776522  112211111    01112235777


Q ss_pred             hccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHH---HHHHHcCChhHHH
Q 037661           97 VLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLIN---EAWEVLSDPKRRE  152 (201)
Q Consensus        97 vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~---~Ay~vLsdp~kR~  152 (201)
                      -|.+.+   +..++-..|++.....|-|..+    ++....+.   +.-.+|+||..|.
T Consensus       452 ale~dp---~~~e~~~~~~rc~~a~~~~~~~----ee~~~r~~~dpev~~il~d~~m~~  503 (539)
T KOG0548|consen  452 ALELDP---SNAEAIDGYRRCVEAQRGDETP----EETKRRAMADPEVQAILQDPAMRQ  503 (539)
T ss_pred             HHhcCc---hhHHHHHHHHHHHHHhhcCCCH----HHHHHhhccCHHHHHHHcCHHHHH
Confidence            777765   8888888898888876555443    23333221   2334477776663

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=90.00  E-value=7  Score=37.23  Aligned_cols=36  Identities=17%  Similarity=0.267  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      +.|..++..+..++..|+|+.|+..|.++..+.|..
T Consensus       125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~  160 (615)
T TIGR00990       125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP  160 (615)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence            457788999999999999999999999999999964

>PRK12370 invasion protein regulator; Provisional

Probab=89.82  E-value=6.5  Score=37.16  Aligned_cols=44  Identities=9%  Similarity=-0.080  Sum_probs=30.4

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      ..+||++..++...            |..+...|++++|+..+++|.+++|....+
T Consensus       331 l~ldP~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a  374 (553)
T PRK12370        331 TELDHNNPQALGLL------------GLINTIHSEYIVGSLLFKQANLLSPISADI  374 (553)
T ss_pred             HhcCCCCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            45788888887766            666666677777777777777777765433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.67  E-value=0.88  Score=42.99  Aligned_cols=64  Identities=22%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV   83 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   83 (201)
                      ...+-+...++...--.+.|..++..+.++++.|.|+.|+.+|..|..++|+.+-.-.-+++|-
T Consensus        96 gep~~~~~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY  159 (606)
T KOG0547|consen   96 GEPDEEQKKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACY  159 (606)
T ss_pred             CCcchhhhhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHH
Confidence            3444477777766655778899999999999999999999999999999999644444444443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=89.54  E-value=3.3  Score=40.16  Aligned_cols=108  Identities=12%  Similarity=0.170  Sum_probs=64.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH-----------H-HhhhccC---cchhcc--ccCCCCC
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH-----------K-LAAEKKS---WYAVLG--IRDHRAG  106 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~-----------~-~~~~~~d---~Y~vLg--v~~~~as  106 (201)
                      ..|..++..|++++|+..++++..+.|....+...+..+...           . .....++   ++-.+|  +.. .-.
T Consensus       289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~-~G~  367 (656)
T PRK15174        289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ-AGK  367 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-CCC
Confidence            347888999999999999999999999986554443322110           0 0001111   111111  111 113


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHh
Q 037661          107 VDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAY  154 (201)
Q Consensus       107 ~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~Y  154 (201)
                      .++-...|++ ++..+|+..+..- .+....+.+|++.+..+.+|..+
T Consensus       368 ~deA~~~l~~-al~~~P~~~~~~~-~ea~~~~~~~~~~~~~~~~~~~W  413 (656)
T PRK15174        368 TSEAESVFEH-YIQARASHLPQSF-EEGLLALDGQISAVNLPPERLDW  413 (656)
T ss_pred             HHHHHHHHHH-HHHhChhhchhhH-HHHHHHHHHHHHhcCCccchhhH
Confidence            3444455555 5667788764443 56778888999999888877433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.34  E-value=4  Score=36.14  Aligned_cols=39  Identities=21%  Similarity=0.212  Sum_probs=36.9

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      ++..|++++..+..++..++|.+|+..|.+|..++|+..
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA  115 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA  115 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence            678899999999999999999999999999999999884

>smart00028 TPR Tetratricopeptide repeats

Probab=89.34  E-value=0.8  Score=23.78  Aligned_cols=30  Identities=23%  Similarity=0.266  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPN   71 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~   71 (201)
                      +..+|..++..++++.|+..+.++..+.|.
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            345689999999999999999999988775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=89.29  E-value=4.5  Score=34.30  Aligned_cols=34  Identities=12%  Similarity=0.136  Sum_probs=18.0

Q ss_pred             CCHHHHHHHH---HHHHHhhCCCCCCCchHHHHHHHHH
Q 037661          105 AGVDVIKKRY---EALVQLFKPDRCSSVGADTANKLIN  139 (201)
Q Consensus       105 as~~eIkkaY---rkla~~~HPDk~~~~~a~~~f~~i~  139 (201)
                      -+....++|+   .+++. -+|+..-.+.+..+...|.
T Consensus       135 rD~~~~~~A~~~~~~li~-~yP~S~ya~~A~~rl~~l~  171 (243)
T PRK10866        135 RDPQHARAAFRDFSKLVR-GYPNSQYTTDATKRLVFLK  171 (243)
T ss_pred             cCHHHHHHHHHHHHHHHH-HCcCChhHHHHHHHHHHHH
Confidence            3556667554   44443 4577665554555544443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.27  E-value=0.81  Score=28.93  Aligned_cols=25  Identities=8%  Similarity=0.126  Sum_probs=23.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 037661           43 KHMAEELFKEEKIDSALCVVDRARM   67 (201)
Q Consensus        43 ~~~A~~~l~~~d~~~A~~~~~~a~~   67 (201)
                      ++.|..++.+||.++|+..++.+..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=88.64  E-value=1.3  Score=36.36  Aligned_cols=46  Identities=17%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      .+.++.+..++..++..|+++.|+..+.+|.++.|....+...+..
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3445556666999999999999999999999999998765544443

>PRK11189 lipoprotein NlpI; Provisional

Probab=88.19  E-value=3.9  Score=35.42  Aligned_cols=32  Identities=16%  Similarity=0.078  Sum_probs=27.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      .++..+...|++++|+..+.++.+++|....+
T Consensus       103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a  134 (296)
T PRK11189        103 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA  134 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            34778899999999999999999999987544

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=87.95  E-value=0.31  Score=43.10  Aligned_cols=55  Identities=24%  Similarity=0.270  Sum_probs=44.9

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCCC-----CchHHHHHHHHHHHHHHcCChhHHHHhhccC
Q 037661          104 RAGVDVIKKRYEALVQLFKPDRCS-----SVGADTANKLINEAWEVLSDPKRREAYDLLM  158 (201)
Q Consensus       104 ~as~~eIkkaYrkla~~~HPDk~~-----~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~  158 (201)
                      .++..+|+.+|+..++.+||++..     ....++.|+.|.+||++|.+.++|..+|...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            457788999999999999999884     2236788999999999999977666666555

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.94  E-value=0.53  Score=27.70  Aligned_cols=29  Identities=21%  Similarity=0.195  Sum_probs=26.0

Q ss_pred             CCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHH
Q 037661           19 SPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSAL   59 (201)
Q Consensus        19 ~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~   59 (201)
                      ...++|++..++...            |..+...|++++|+
T Consensus         5 Aie~~P~n~~a~~nl------------a~~~~~~g~~~~A~   33 (34)
T PF13431_consen    5 AIELNPNNAEAYNNL------------ANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHCCCCHHHHHHH------------HHHHHHCcCHHhhc
Confidence            456799999999999            99999999999986

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.83  E-value=0.72  Score=43.60  Aligned_cols=57  Identities=18%  Similarity=0.114  Sum_probs=49.6

Q ss_pred             cCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           17 SSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        17 ~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      ..++.+||++.++++++            +.++..+.+|+.|..-|.+++.++|....+...+..|-..
T Consensus       416 ~~~ieL~p~~~kgy~RK------------g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  416 KKCIELDPNFIKAYLRK------------GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHhcCchHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            35678899999999999            9999999999999999999999999998777666665443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=87.83  E-value=1.3  Score=28.96  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           49 LFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        49 ~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      ++..|+|++|+..+.++...+|....+.-.+..+...
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~   37 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK   37 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999988777666655443

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.82  E-value=1.9  Score=36.66  Aligned_cols=38  Identities=26%  Similarity=0.279  Sum_probs=36.1

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      ++.+|.+++..+..+|..|+|.+|..-|..|..++|..
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~  128 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST  128 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc
Confidence            57889999999999999999999999999999999976

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=87.76  E-value=3.8  Score=35.23  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQ  119 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~  119 (201)
                      ..-+.+|..+|+.||+..|+..+++|.+++|........++            -+|.-+|... .+     .+.||+ ++
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A------------~~Yq~~Ge~~-~A-----~e~Yrk-Al   96 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA------------HYYQKLGEND-LA-----DESYRK-AL   96 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH------------HHHHHcCChh-hH-----HHHHHH-HH
Confidence            34477899999999999999999999999999864433322            2577777665 32     234444 67


Q ss_pred             hhCCCCC
Q 037661          120 LFKPDRC  126 (201)
Q Consensus       120 ~~HPDk~  126 (201)
                      ..||+..
T Consensus        97 sl~p~~G  103 (250)
T COG3063          97 SLAPNNG  103 (250)
T ss_pred             hcCCCcc
Confidence            7777654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=86.19  E-value=2  Score=37.20  Aligned_cols=28  Identities=14%  Similarity=0.267  Sum_probs=14.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      +..+++.|+|..|+..+.++.++.|++.
T Consensus       107 gk~~~~~g~~~~A~~~~rkA~~l~p~d~  134 (257)
T COG5010         107 GKNQIRNGNFGEAVSVLRKAARLAPTDW  134 (257)
T ss_pred             HHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence            4445555555555555555555555443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=85.54  E-value=2.6  Score=35.66  Aligned_cols=39  Identities=21%  Similarity=0.066  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      .+.-+...|..+.+.|+++.|+++++++.+++|....+.
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~  183 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDAR  183 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            344556679999999999999999999999999986554

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=85.14  E-value=5.3  Score=29.59  Aligned_cols=57  Identities=16%  Similarity=0.047  Sum_probs=46.1

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      -|..+..++.+-....+.+++..+...+..|||..|.+.+.++.+..+.+ .+..++.
T Consensus        43 ~p~~~~~~~~~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~-~l~~L~A   99 (108)
T PF07219_consen   43 LPSRVRRWRRRRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNP-LLNYLLA   99 (108)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Confidence            36667777777788899999999999999999999999999998774443 3555543

These are membrane protein involved in a late step of protoheme IX synthesis [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.03  E-value=2.9  Score=24.29  Aligned_cols=31  Identities=16%  Similarity=0.183  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNP   70 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p   70 (201)
                      ..+-.+|..+...|++++|+.++.++..+.-
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            4566789999999999999999999886543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=84.41  E-value=0.85  Score=42.62  Aligned_cols=54  Identities=11%  Similarity=0.095  Sum_probs=48.8

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      +.++|...+++++|            |..+++.+.+..|++.+++...+.|+...+.+++..|+-.
T Consensus        65 ie~dP~~~K~Y~rr------------g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~  118 (476)
T KOG0376|consen   65 IELDPTYIKAYVRR------------GTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI  118 (476)
T ss_pred             hhcCchhhheeeec------------cHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence            45689999999999            9999999999999999999999999999999999888855

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=84.19  E-value=6  Score=31.13  Aligned_cols=45  Identities=13%  Similarity=0.102  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV   83 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   83 (201)
                      ++++++.|+.++..||+.-|..++..+...+|....++.+...+-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al  114 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADAL  114 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            467889999999999999999999999999999987777666443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=84.12  E-value=18  Score=34.43  Aligned_cols=42  Identities=17%  Similarity=0.105  Sum_probs=24.5

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      .++|.+...+..+            |..++..|++++|+..+.++..++|....
T Consensus       359 ~l~P~~~~~~~~l------------a~~~~~~g~~~eA~~~~~~al~~~p~~~~  400 (615)
T TIGR00990       359 ELDPRVTQSYIKR------------ASMNLELGDPDKAEEDFDKALKLNSEDPD  400 (615)
T ss_pred             HcCCCcHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            3566666666555            55555556666666666655555555443

>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types

Probab=83.21  E-value=0.74  Score=38.96  Aligned_cols=24  Identities=8%  Similarity=0.174  Sum_probs=15.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCCC
Q 037661          104 RAGVDVIKKRYEALVQLFKPDRCS  127 (201)
Q Consensus       104 ~as~~eIkkaYrkla~~~HPDk~~  127 (201)
                      ..|.+|--+.--.+-..+-|++..
T Consensus       159 PmTkEEyearQSvIRrVvDpETGR  182 (225)
T PF10500_consen  159 PMTKEEYEARQSVIRRVVDPETGR  182 (225)
T ss_pred             CCCHHHHHHHHhhheeeecCCCCc
Confidence            456666666555566677787764

At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=83.18  E-value=4.9  Score=37.39  Aligned_cols=95  Identities=17%  Similarity=0.097  Sum_probs=67.4

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH---hhHHHHHHHHHhhh------
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN---SHFACYVVHKLAAE------   90 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~---~~l~~~~v~~~~~~------   90 (201)
                      .-+|+.+.+++.-|            .....-.++.+.|+++++++.+++|.....-   .+..+|++....+.      
T Consensus       196 lkld~~n~~al~vr------------g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G  263 (486)
T KOG0550|consen  196 LKLDATNAEALYVR------------GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG  263 (486)
T ss_pred             HhcccchhHHHHhc------------ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence            34688888888888            9999999999999999999999999885544   44445554422111      


Q ss_pred             -----ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 037661           91 -----KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS  128 (201)
Q Consensus        91 -----~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~  128 (201)
                           ...|=+-|+|+| . +.+-.-+-|-.+++..++-....
T Consensus       264 ~y~~A~E~Yteal~idP-~-n~~~naklY~nra~v~~rLgrl~  304 (486)
T KOG0550|consen  264 NYRKAYECYTEALNIDP-S-NKKTNAKLYGNRALVNIRLGRLR  304 (486)
T ss_pred             chhHHHHHHHHhhcCCc-c-ccchhHHHHHHhHhhhcccCCch
Confidence                 113556788887 5 45556777888888887766543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=82.92  E-value=5.4  Score=34.34  Aligned_cols=106  Identities=16%  Similarity=0.087  Sum_probs=68.5

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH-----------HHHHHh
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY-----------VVHKLA   88 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~-----------~v~~~~   88 (201)
                      ..+||++..++..+            |..+...|+.+.|.+.|++|..+.|....+..-....           .-...+
T Consensus        62 L~~DPs~~~a~~~~------------A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~A  129 (250)
T COG3063          62 LEHDPSYYLAHLVR------------AHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA  129 (250)
T ss_pred             HHhCcccHHHHHHH------------HHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence            44677777777777            9999999999999999999999999886554322211           111123


Q ss_pred             hhccCcch------hccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHH
Q 037661           89 AEKKSWYA------VLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLIN  139 (201)
Q Consensus        89 ~~~~d~Y~------vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~  139 (201)
                      ...++||+      -+|+=...+....-.+.|-+.++.+.|+.....  .+.++...
T Consensus       130 l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~--l~~a~~~~  184 (250)
T COG3063         130 LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL--LELARLHY  184 (250)
T ss_pred             HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH--HHHHHHHH
Confidence            34445544      444422134445667778888999988776443  44444333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=82.66  E-value=3.2  Score=27.42  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=30.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV   83 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   83 (201)
                      ...+++.++|+.|+..++++..++|....+......+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~   39 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCL   39 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            46789999999999999999999999765544444433

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=82.60  E-value=6.7  Score=35.47  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=49.8

Q ss_pred             hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH--HHhhhccCcchhccccC
Q 037661           34 LADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH--KLAAEKKSWYAVLGIRD  102 (201)
Q Consensus        34 ~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~--~~~~~~~d~Y~vLgv~~  102 (201)
                      .++.||..++..|....+.|..++|.++++.|..+.|+...+--.+......  -+-.....|.+-|-+++
T Consensus       111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP  181 (472)
T KOG3824|consen  111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP  181 (472)
T ss_pred             hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence            4567899999999999999999999999999999999986553222222111  01122345777888877

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.42  E-value=2.3  Score=37.24  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=42.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCC
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPD  124 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPD  124 (201)
                      .|..++..|+|++|...+..|...+|....+-.-+.++            +..+|-+.      ++-.+|....+..||+
T Consensus       207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~------------~~~~gk~~------~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC------------SLHLGKPT------EAAERYLSQLKQSNPN  268 (290)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH------------HHHTT-TC------HHHHHHHHHCHHHTTT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH------------HHHhCCCh------hHHHHHHHHHHHhCCC
Confidence            39999999999999999999999998876432222222            22333332      3445777778888998


Q ss_pred             CC
Q 037661          125 RC  126 (201)
Q Consensus       125 k~  126 (201)
                      +.
T Consensus       269 h~  270 (290)
T PF04733_consen  269 HP  270 (290)
T ss_dssp             SH
T ss_pred             Ch
Confidence            64

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known

Probab=82.40  E-value=8.1  Score=33.63  Aligned_cols=86  Identities=16%  Similarity=0.281  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQ  119 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~  119 (201)
                      ..+....+..+..|||.+|+..+...+.+--...++    ..+.-  +..+-.+++.        .....+...+.+++.
T Consensus       128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~----~c~~~--L~~~L~e~~~--------~i~~~ld~~l~~~~~  193 (291)
T PF10475_consen  128 QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGY----SCVRH--LSSQLQETLE--------LIEEQLDSDLSKVCQ  193 (291)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc----hHHHH--HhHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence            455566777899999999999999888764322211    11111  1111122332        245567777888887


Q ss_pred             hhCCCCCCCchHHHHHHHHHHHHHHcCCh
Q 037661          120 LFKPDRCSSVGADTANKLINEAWEVLSDP  148 (201)
Q Consensus       120 ~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp  148 (201)
                      .+.|         ..|..|.+||..|++.
T Consensus       194 ~Fd~---------~~Y~~v~~AY~lLgk~  213 (291)
T PF10475_consen  194 DFDP---------DKYSKVQEAYQLLGKT  213 (291)
T ss_pred             hCCH---------HHHHHHHHHHHHHhhh
Confidence            6644         5677889999988864

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=81.60  E-value=16  Score=29.68  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=17.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      .+.+|..++..|+++.|+..+.+..+.+|..+.
T Consensus        45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~   77 (203)
T PF13525_consen   45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK   77 (203)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            344455666666666666666666666665543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=81.16  E-value=22  Score=35.10  Aligned_cols=29  Identities=21%  Similarity=0.239  Sum_probs=18.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      |+..++.|.+++|.+.++.+.+++|....
T Consensus        93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~  121 (694)
T PRK15179         93 ARALEAAHRSDEGLAVWRGIHQRFPDSSE  121 (694)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHhhCCCcHH
Confidence            66666666666666666666666666543

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=80.58  E-value=3.8  Score=31.04  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=35.6

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCCCCch-----HHHHHHHHHHHHHHcCChh
Q 037661          104 RAGVDVIKKRYEALVQLFKPDRCSSVG-----ADTANKLINEAWEVLSDPK  149 (201)
Q Consensus       104 ~as~~eIkkaYrkla~~~HPDk~~~~~-----a~~~f~~i~~Ay~vLsdp~  149 (201)
                      ..+..+++.+.|.+-+++|||......     -++-++.|+.-.+.|..+.
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~   55 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK   55 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence            556788999999999999999765544     4555778887777777553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	201
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		3e-06
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		4e-05
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		4e-05
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		1e-04
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-04
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-04
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		5e-04
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		8e-04

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKL------INEAWE 143
           KK WY++LG  D  A +  +K++Y+ L+ ++ PD+ S+ V A T  +       I++AW+
Sbjct: 9   KKDWYSILG-ADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67
Query: 144 VLSDPKRREAYDLLMCFD 161
           +L + + +  YDL  C D
Sbjct: 68  ILGNEETKREYDLQRCED 85

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKL------INEAWE 143
           KK WY++LG  D  A +  +K++Y+ L+ L+ PD+ S+ V A T  +       I++AW+
Sbjct: 15  KKDWYSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
Query: 144 VLSDPKRREAYDL 156
           +L + + ++ YDL
Sbjct: 74  ILGNEETKKKYDL 86

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 88  AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
            +E K +YA++G++     +  IK  Y  L + + PD      A+   K + EAWEVLSD
Sbjct: 1   GSELKDYYAIMGVKP-TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSD 59
Query: 148 PKRREAYDLL 157
            +RR  YD +
Sbjct: 60  EQRRAEYDQM 69

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 88  AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
           A E K +YA+LG++     +  IK  Y  L + + PD      A+   K + EAWEVL D
Sbjct: 24  AMELKDYYAILGVQP-TDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKD 82
Query: 148 PKRREAYDLL 157
            +RR  YD L
Sbjct: 83  EQRRAEYDQL 92

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREA 153
           +Y +LG+    +  D +KK Y  L   F PD+  + GA  A K I  A+ VLS+P++R+ 
Sbjct: 9   YYEILGVSRGASDED-LKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 154 YD 155
           YD
Sbjct: 68  YD 69

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 93  SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
           ++Y VLG++ + A  + +KK Y  L   + PD+  + G     K I++A+EVLSD K+RE
Sbjct: 7   TYYDVLGVKPN-ATQEELKKAYRKLALKYHPDKNPNEGEKF--KQISQAYEVLSDAKKRE 63
Query: 153 AYD 155
            YD
Sbjct: 64  LYD 66

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151
           K +Y  LG+    A  + IK+ Y      + PD+    GA+   K I EA++VLSDP++R
Sbjct: 3   KDYYQTLGLA-RGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 152 EAYD 155
           E +D
Sbjct: 62  EIFD 65

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREA 153
           +Y +LG+    A    IKK +  L   + PD+  S  A+   + I EA+E LSD  RR+ 
Sbjct: 9   YYDILGV-PKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 154 YDLL 157
           YD L
Sbjct: 68  YDTL 71

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 94  WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC--SSVGADTANKLINEAWEVLSDPKRR 151
           +Y VLG++   A  + IKK Y  L   + PD+   +   A+   KL++EA+EVLSD K+R
Sbjct: 11  YYEVLGVQ-ASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 152 EAYDLLMC 159
             YD   C
Sbjct: 70  SLYDRAGC 77

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPK 149
           K+ +Y +LG+    A    I+K Y+ L   + PDR      A+   K I EA+EVL+D +
Sbjct: 2   KQDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 150 RREAYD 155
           +R AYD
Sbjct: 61  KRAAYD 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-13
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	8e-13
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	3e-12
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	8e-12
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	9e-12
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-11
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	8e-11
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-10
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-10
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-10
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-10
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	4e-10
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	6e-10
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-09
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-09
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	4e-09
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	4e-09
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	5e-09
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	6e-09
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	7e-09
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	1e-08
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-08
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-08
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	5e-08
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	7e-08
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	3e-07
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	9e-07
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	3e-05
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-04

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.5 bits (160), Expect = 6e-13
 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 28  EALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKL 87
           E L  ++      A K  AE    EE  D A+   + A+  N N Q +            
Sbjct: 320 EVL--QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377

Query: 88  AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWE 143
            ++K+ +Y +LG+    A    I K Y  L   + PD   +      A+     I  A E
Sbjct: 378 QSQKRDYYKILGV-KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436

Query: 144 VLSDPKRREAYD 155
           VLSDP+ R+ +D
Sbjct: 437 VLSDPEMRKKFD 448

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 60.9 bits (148), Expect = 8e-13
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 83  VVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAW 142
           ++  L+A     Y VLG+    A    IKK Y+ L + + PD+    GA+     I++A+
Sbjct: 8   ILQSLSALDFDPYRVLGV-SRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAY 66

Query: 143 EVLSDPKRREAYD 155
           E+LS+ ++R  YD
Sbjct: 67  EILSNEEKRTNYD 79

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 89  AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP 148
                +Y +LG+    A  + +KK Y  L   F PD+  + GA  A K I  A+ VLS+P
Sbjct: 4   GSSGDYYEILGV-SRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNP 62

Query: 149 KRREAYD 155
           ++R+ YD
Sbjct: 63  EKRKQYD 69

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 57.8 bits (140), Expect = 8e-12
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
            K  + +LG+    A  D + K Y  L  L  PD+C + G++ A K +  A   L    +
Sbjct: 26  SKDSWDMLGV-KPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK 84

Query: 151 REAYD 155
                
Sbjct: 85  SGPSS 89

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 59.5 bits (144), Expect = 9e-12
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 90  EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN-------KLINEAW 142
            KK WY++LG  D  A +  +K++Y+ L+ ++ PD+ S+                I++AW
Sbjct: 8   PKKDWYSILGA-DPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAW 66

Query: 143 EVLSDPKRREAYD 155
           ++L + + +  YD
Sbjct: 67  KILGNEETKREYD 79

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 56.5 bits (137), Expect = 3e-11
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 88  AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
           +    S+Y +LG+    A    IKK +  L   + PD+  S  A+   + I EA+E LSD
Sbjct: 3   SGSSGSYYDILGV-PKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSD 61

Query: 148 PKRREAYD 155
             RR+ YD
Sbjct: 62  ANRRKEYD 69

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 54.9 bits (133), Expect = 8e-11
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
            K +Y  LG+    A  + IK+ Y      + PD+    GA+   K I EA++VLSDP++
Sbjct: 2   GKDYYQTLGL-ARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 151 REAYD 155
           RE +D
Sbjct: 61  REIFD 65

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 90  EKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP 148
           E K +YA+LG+       +  IK  Y  L + + PD      A+   K + EAWEVL D 
Sbjct: 26  ELKDYYAILGVQPT--DDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDE 83

Query: 149 KRREAYD 155
           +RR  YD
Sbjct: 84  QRRAEYD 90

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 89  AEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN-KLINEAWEVLS 146
            E      +LG+ R     + +++K Y    + F PD+    G D    K +N  ++ + 
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK----GGDEEKMKKMNTLYKKME 63

Query: 147 DPKRREAYDLLMCFDKTVQIQAENQDPEMN 176
           D  +         F    ++ A + +P ++
Sbjct: 64  DGVKYAHQPDFGGFWDATEVFASSLNPGVD 93

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 85  HKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDR-CSSVGADTANKLINEAWE 143
             L+   +S Y VLG+ D  A  D IKK Y  L   + PD+   +  A    K IN A  
Sbjct: 10  RSLSTSGESLYHVLGL-DKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 68

Query: 144 VLSDPKRREAYD 155
           +L+D  +R  YD
Sbjct: 69  ILTDATKRNIYD 80

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 54.0 bits (130), Expect = 4e-10
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC----SSVGADTANKLINEAWEVLS 146
            ++ Y VL +         + K Y AL +   PDR       + A+   ++I  A+E L 
Sbjct: 14  LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 73

Query: 147 DPKRREAYD 155
           D + +  YD
Sbjct: 74  DDEAKTNYD 82

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDR-------CSSVGADTANKLINEAWE 143
           KK WY++LG  D  A +  +K++Y+ L+ L+ PD+        +          I++AW+
Sbjct: 15  KKDWYSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73

Query: 144 VLSDPKRREAYD 155
           +L + + ++ YD
Sbjct: 74  ILGNEETKKKYD 85

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 53.4 bits (129), Expect = 6e-10
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPK 149
           K+ +Y +LG+    A    I+K Y+ L   + PDR      A+   K I EA+EVL+D +
Sbjct: 2   KQDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 150 RREAYD 155
           +R AYD
Sbjct: 61  KRAAYD 66

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 86  KLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDR--CSSVGADTANKLINEAWE 143
             ++   ++Y VLG+    A  + IKK Y  L   + PD+   +   A+   KL++EA+E
Sbjct: 3   SGSSGMANYYEVLGV-QASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61

Query: 144 VLSDPKRREAYD 155
           VLSD K+R  YD
Sbjct: 62  VLSDSKKRSLYD 73

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 88  AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC-SSVGADTANKLINEAWEVLS 146
           +     +Y +LG+    A    IKK Y  L + + PD       A      + EA+EVLS
Sbjct: 3   SGSSGDYYQILGV-PRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61

Query: 147 DPKRREAYD 155
           D  +R+ YD
Sbjct: 62  DEVKRKQYD 70

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 88  AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLS 146
           + + + +Y +LG  D  + V+ I   ++       PD+   +  A    + + +A E+L+
Sbjct: 16  SEDTEDYYTLLGC-DELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74

Query: 147 DPKRREAYD 155
           + + R  YD
Sbjct: 75  NEESRARYD 83

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 50.7 bits (122), Expect = 4e-09
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 88  AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDR--CSSVGADTANKLINEAWEVL 145
           ++    +Y VL +   +A  + IKK Y  L   + PD+   +   A+   K + EA+EVL
Sbjct: 5   SSGMVDYYEVLDV-PRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVL 63

Query: 146 SDPKRREAYD 155
           SD K+R+ YD
Sbjct: 64  SDAKKRDIYD 73

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 89  AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP 148
            ++   Y +LG+    A    +KK Y      + PD+    G     K I+EA+E+L+DP
Sbjct: 5   VKETKLYDLLGV-SPSANEQELKKGYRKAALKYHPDK--PTGDTEKFKEISEAFEILNDP 61

Query: 149 KRREAYD 155
           ++RE YD
Sbjct: 62  QKREIYD 68

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 51.0 bits (122), Expect = 6e-09
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 86  KLAAEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEV 144
            +  E      +LG+ R     + +++K Y    + F PD+    G +   K +N  ++ 
Sbjct: 2   HMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKK 58

Query: 145 LSDPKRREAYD 155
           + D  +     
Sbjct: 59  MEDGVKYAHQP 69

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 49.5 bits (119), Expect = 7e-09
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 89  AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP 148
            ++  +Y VLG+    A  + +KK Y  +   F PD+          K I++A+EVLSD 
Sbjct: 5   VKETGYYDVLGV-KPDASDNELKKAYRKMALKFHPDKNP--DGAEQFKQISQAYEVLSDE 61

Query: 149 KRREAYD 155
           K+R+ YD
Sbjct: 62  KKRQIYD 68

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPK 149
           + + Y +LG+    A    IK  Y     L+ PDR S S  A      I++A+ VL    
Sbjct: 16  RTALYDLLGV-PSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74

Query: 150 RREAYD 155
            R  YD
Sbjct: 75  LRRKYD 80

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 80  ACYVVHKLAAEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVG------AD 132
            C  +       + +++++   R  R     ++ RY+ L +L  PD  S         ++
Sbjct: 32  QCRALQAPD-PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSE 90

Query: 133 TANKLINEAWEVLSDPKRREAYDLLMCFDKTVQIQAENQDPEMNVVKLENQDPEDNNDDK 192
             + L+N+A++ L  P  R  Y L +   +  +      D +  +  +E  +     + +
Sbjct: 91  KHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESE 150

Query: 193 PK 194
             
Sbjct: 151 AA 152

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 95  YAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC--SSVGADTANKLINEAWEVLSDPKRRE 152
           Y +L +    A  D IKK Y      + PD+   +   A+   K + EA+EVLSD  +RE
Sbjct: 5   YEILDV-PRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63

Query: 153 AYD 155
            YD
Sbjct: 64  IYD 66

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 49.9 bits (119), Expect = 7e-08
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKR 150
           +++Y++LG+    A    I++ ++ L     PD+   +  A      IN A+EVL D   
Sbjct: 2   QNFYSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 60

Query: 151 REAYD 155
           R+ YD
Sbjct: 61  RKKYD 65

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 95  YAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSD 147
           + + G+   ++     +  R++ L + + PD+ +S        A   +  IN+AW+ L  
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 148 PKRREAYDLLMCFDKTVQIQAENQDPEMNVVKLE 181
           P  R  Y L +        Q   +D    + +LE
Sbjct: 64  PLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLE 97

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 46.1 bits (109), Expect = 9e-07
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 91  KKSWYAVLGIRDHRAGV------DVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEV 144
             ++Y +      +           ++K Y  L     PD          +  +N+A+  
Sbjct: 10  TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHT 67

Query: 145 LSDPKRREAYDLLMCFDKTVQIQAENQDPEMNVV 178
           L DP RR  Y  ++   + + +  E    E+   
Sbjct: 68  LKDPLRRSQY--MLKLLRNIDLTQEQTSNEVTTS 99

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 2/115 (1%)

Query: 78  HFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANK 136
           H      H      +++Y++LG+    A    I++ ++ L     PD+   +  A     
Sbjct: 7   HHHHSSGHIEGRHDQNFYSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFL 65

Query: 137 LINEAWEVLSDPKRREAYDLLMCFDKTVQIQAENQDPEMNVVKLENQDPEDNNDD 191
            IN A+EVL D   R+ YD             + +            D +     
Sbjct: 66  KINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIIT 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 35/234 (14%), Positives = 67/234 (28%), Gaps = 74/234 (31%)

Query: 10  SSSSSSLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69
             + +S S    N      ++ ++L              L K +  ++ L V+    ++N
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAEL------------RRLLKSKPYENCLLVLL--NVQN 255

Query: 70  PNH-QGLNSHFAC---------YVVHKLAAEKKSWYAVLGIRDHRAGVD----------V 109
                  N   +C          V   L+A   +    + +  H   +            
Sbjct: 256 AKAWNAFN--LSCKILLTTRFKQVTDFLSAATTT---HISLDHHSMTLTPDEVKSLLLKY 310

Query: 110 IKKRYEAL---VQLFKPDRCSSVGA-----------------DTANKLINEAWEVLSDPK 149
           +  R + L   V    P R S +                   D    +I  +  VL   +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 150 RREAYDLLMCFDKTVQI----------QAENQDPEMNVVKLEN-----QDPEDN 188
            R+ +D L  F  +  I               D  + V KL       + P+++
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 89  AEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN-KLINEAWEVLS 146
           A+K+    +L + R        +++ Y+    L  PD+    G   A  + +N  W    
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDK----GGSHALMQELNSLWGTFK 63

Query: 147 DPKRREAYDL 156
                   +L
Sbjct: 64  TEVYNLRMNL 73

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 95  YAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
             +L + ++      +K+ +  ++    PD+  S     A K INEA + L      +
Sbjct: 17  LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS--PFLATK-INEAKDFLEKRGISK 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.86
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.86
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.85
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.85
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.85
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.84
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.84
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.84
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.83
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.83
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.82
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.82
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.81
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.81
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.8
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.79
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.77
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.75
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.72
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.72
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.72
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.72
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.71
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.7
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.69
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.68
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.68
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.68
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.68
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.65
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.61
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.6
2guz_A	71	Mitochondrial import inner membrane translocase su	99.56
2guz_B	65	Mitochondrial import inner membrane translocase su	98.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.63
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.63
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.95
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	95.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	95.74
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.45
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.34
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.02
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	94.99
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	94.93
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	94.81
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	94.56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	94.54
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	94.25
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.02
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	94.01
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	93.78
3k9i_A	117	BH0479 protein; putative protein binding protein,	93.77
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	93.76
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	93.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	93.66
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	93.51
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	93.41
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	93.39
2kat_A	115	Uncharacterized protein; NESG, structure, structur	93.38
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	93.25
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	93.17
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	93.17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	93.16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	93.12
3k9i_A	117	BH0479 protein; putative protein binding protein,	92.95
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	92.84
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	92.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	92.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	92.66
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	92.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	92.63
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	92.61
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	92.32
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	92.22
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	92.09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	91.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	91.9
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	91.77
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	91.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	91.7
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	91.64
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	91.6
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	91.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	91.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	91.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	91.42
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	91.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	91.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	91.11
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	91.08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	91.05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	90.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	90.82
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	90.59
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	90.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	90.39
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	90.3
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	90.06
1pc2_A	152	Mitochondria fission protein; unknown function; NM	89.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	89.2
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	88.89
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	88.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	88.52
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	88.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	88.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	87.99
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	87.92
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	87.92
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	87.86
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	87.57
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	87.4
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	87.06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	87.05
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	86.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	86.62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	86.47
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	86.22
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	86.13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	86.03
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	86.0
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	85.95
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	85.88
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	85.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	85.41
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	85.35
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	84.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	83.68
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	83.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	83.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	83.38
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	83.16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	83.09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	83.05
3u4t_A	272	TPR repeat-containing protein; structural genomics	82.99
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	82.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	82.66
3u4t_A	272	TPR repeat-containing protein; structural genomics	82.62
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	82.47
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	82.42
2gw1_A	514	Mitochondrial precursor proteins import receptor;	82.42
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	82.2
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	81.79
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	81.65
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	81.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	81.42
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	81.27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	81.23
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	81.16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	81.03
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	80.93
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	80.58
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	80.05

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.86  E-value=4.1e-22  Score=140.13  Aligned_cols=71  Identities=34%  Similarity=0.525  Sum_probs=66.7

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT  163 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~  163 (201)
                      .|||+||||++ +++.++||++||+|++++|||+++.+.+.+.|+.|++||++|+||.+|..||.++..+..
T Consensus         3 ~~~y~iLgv~~-~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   73 (77)
T 1hdj_A            3 KDYYQTLGLAR-GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCSHHHHTCCT-TCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence            58999999999 999999999999999999999999888999999999999999999999999998865443

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=4.9e-22  Score=140.07  Aligned_cols=71  Identities=34%  Similarity=0.549  Sum_probs=67.2

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ...|||+||||++ +++..+||++||+|++++|||++..+.+.+.|+.|++||++|+||.+|..||.++..+
T Consensus         5 ~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            5 SSGDYYEILGVSR-GASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCCHHHHHTCCT-TCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            4569999999999 9999999999999999999999988889999999999999999999999999988754

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=6.3e-22  Score=142.80  Aligned_cols=72  Identities=35%  Similarity=0.509  Sum_probs=67.2

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK  162 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~  162 (201)
                      ...|||+||||++ +++.++||++||+|+++||||+++.+.+.+.|+.|++||++|+||.+|..||.++....
T Consensus         5 ~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (88)
T 2ctr_A            5 SSGSYYDILGVPK-SASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF   76 (88)
T ss_dssp             CCCSHHHHHTCCT-TCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred             CCCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            4569999999999 99999999999999999999999987899999999999999999999999999886443

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.85  E-value=1.4e-21  Score=140.99  Aligned_cols=71  Identities=31%  Similarity=0.424  Sum_probs=67.0

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ...|||+||||++ +++..+||++||+|+++||||++..+.+.+.|+.|++||++|+||.+|..||.++...
T Consensus        15 ~~~d~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           15 LDFDPYRVLGVSR-TASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSSCHHHHHTCCT-TCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            4569999999999 9999999999999999999999998889999999999999999999999999988643

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=1.7e-21  Score=137.56  Aligned_cols=71  Identities=31%  Similarity=0.450  Sum_probs=65.7

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ...|||+||||++ +++..+||++||+|+++||||+++. +.+.+.|+.|++||++|+||.+|..||.++..+
T Consensus         5 ~~~~~y~iLgv~~-~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            5 SSGDYYQILGVPR-NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             CCSCHHHHHTCCT-TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            4569999999999 9999999999999999999999974 458999999999999999999999999988654

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=3.5e-21  Score=136.78  Aligned_cols=70  Identities=34%  Similarity=0.502  Sum_probs=65.0

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--GADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      ..|||+||||++ +++..+||++||+|+++||||+++..  .+.+.|+.|++||++|+||.+|..||.++..+
T Consensus         8 ~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   79 (82)
T 2ej7_A            8 MVDYYEVLDVPR-QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP   79 (82)
T ss_dssp             SCCHHHHTTCCT-TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred             CcCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            469999999999 99999999999999999999999765  47889999999999999999999999988654

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.84  E-value=3.9e-21  Score=133.89  Aligned_cols=67  Identities=34%  Similarity=0.535  Sum_probs=62.4

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ...|||+||||++ +++..+||++||+|++++|||+++..  .+.|+.|++||++|+||.+|..||.+|.
T Consensus         6 ~~~~~y~iLgl~~-~a~~~eIk~ayr~l~~~~HPD~~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKP-DASDNELKKAYRKMALKFHPDKNPDG--AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCT-TCCHHHHHHHHHHHHHHTCTTTCTTC--HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCcCH--HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            4579999999999 99999999999999999999999764  6899999999999999999999999885

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=3.2e-21  Score=142.04  Aligned_cols=75  Identities=28%  Similarity=0.398  Sum_probs=67.0

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcccc
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQ  165 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~  165 (201)
                      ...|||+||||++ +++.++||++||+|+++||||++.. +.+.+.|+.|++||+||+||.+|..||..+.......
T Consensus        15 ~~~~~Y~vLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e~~~   90 (99)
T 2yua_A           15 SRTALYDLLGVPS-TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLR   90 (99)
T ss_dssp             CSSHHHHHHTCCT-TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHHHHH
T ss_pred             CccCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccccccc
Confidence            4569999999999 9999999999999999999999964 5589999999999999999999999999876554443

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=5e-21  Score=138.97  Aligned_cols=74  Identities=36%  Similarity=0.553  Sum_probs=67.0

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--GADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV  164 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~  164 (201)
                      ...|||+||||++ +++..+||++||+|+++||||+++..  .+.+.|+.|++||++|+||.+|..||..+......
T Consensus         7 ~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   82 (92)
T 2dmx_A            7 GMANYYEVLGVQA-SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA   82 (92)
T ss_dssp             CCCCHHHHHTCCT-TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred             CCcCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            3469999999999 99999999999999999999999765  47899999999999999999999999998765443

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.83  E-value=4e-21  Score=139.71  Aligned_cols=70  Identities=30%  Similarity=0.597  Sum_probs=64.5

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-------chHHHHHHHHHHHHHHcCChhHHHHhhccCCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-------VGADTANKLINEAWEVLSDPKRREAYDLLMCF  160 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-------~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~  160 (201)
                      ...|||+||||++ +++..+||++||+|+++||||+++.       ..+.+.|+.|++||++|+||.+|+.||..+..
T Consensus        14 ~~~~~y~iLgv~~-~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           14 LKKDWYSILGADP-SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SCSCHHHHTTCCT-TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             CCCChHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            4569999999999 9999999999999999999999874       34889999999999999999999999998764

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=8.4e-21  Score=142.78  Aligned_cols=72  Identities=19%  Similarity=0.325  Sum_probs=66.2

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK  162 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~  162 (201)
                      ...|||+||||++ +++..+||++||+|+++||||+++ .+.+.+.|+.|++||++|+||.+|..||.++..+.
T Consensus        18 ~~~d~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           18 DTEDYYTLLGCDE-LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCHHHHTTCCT-TSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            4579999999999 999999999999999999999998 45689999999999999999999999999886543

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.82  E-value=8.4e-21  Score=138.02  Aligned_cols=70  Identities=30%  Similarity=0.476  Sum_probs=64.2

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK  162 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~  162 (201)
                      ...|||+||||++ +++..+||++||+|+++||||+++..  .+.|+.|++||++|+||.+|+.||.++....
T Consensus         6 ~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   75 (92)
T 2o37_A            6 KETKLYDLLGVSP-SANEQELKKGYRKAALKYHPDKPTGD--TEKFKEISEAFEILNDPQKREIYDQYGLEAA   75 (92)
T ss_dssp             SCCHHHHHHTCCT-TCCHHHHHHHHHHHHHHHCTTSTTCC--HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred             cCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCh--HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence            4569999999999 99999999999999999999999765  6899999999999999999999999886443

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-20  Score=139.31  Aligned_cols=71  Identities=35%  Similarity=0.465  Sum_probs=63.8

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYDLLMCFDKT  163 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~  163 (201)
                      .|||+||||++ +++.++||++||+|++++|||+++...  +.+.|+.|++||++|+||.+|+.||.++..+..
T Consensus         2 ~d~Y~iLgv~~-~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPR-SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCT-TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            58999999999 999999999999999999999997653  789999999999999999999999998865544

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.81  E-value=9.8e-21  Score=140.27  Aligned_cols=73  Identities=34%  Similarity=0.522  Sum_probs=67.1

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV  164 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~  164 (201)
                      ..|||+||||++ +++.++||++||+|+++||||+++. +.+++.|+.|++||++|+||.+|..||..+..+...
T Consensus         2 ~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   75 (103)
T 1bq0_A            2 KQDYYEILGVSK-TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ   75 (103)
T ss_dssp             CCCSTTTTSSCS-SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred             CCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence            368999999999 9999999999999999999999985 558999999999999999999999999999876543

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.80  E-value=4.8e-20  Score=138.04  Aligned_cols=74  Identities=32%  Similarity=0.452  Sum_probs=67.0

Q ss_pred             hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661           89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT  163 (201)
Q Consensus        89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~  163 (201)
                      ....|||+||||++ +++.++||++||+|++++|||+++. +.+.+.|+.|++||++|+||.+|+.||.++..+..
T Consensus        14 ~~~~~~Y~vLgv~~-~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           14 TSGESLYHVLGLDK-NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             SCSCCHHHHHTCCT-TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             CCCCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            34569999999999 9999999999999999999999975 45889999999999999999999999998865543

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.79  E-value=4.9e-20  Score=137.72  Aligned_cols=71  Identities=25%  Similarity=0.430  Sum_probs=65.5

Q ss_pred             hhccCcchhccccCCCC-CHHHHHHHHHHHHHhhCCCCCCC----chHHHHHHHHHHHHHHcCChhHHHHhhccCCC
Q 037661           89 AEKKSWYAVLGIRDHRA-GVDVIKKRYEALVQLFKPDRCSS----VGADTANKLINEAWEVLSDPKRREAYDLLMCF  160 (201)
Q Consensus        89 ~~~~d~Y~vLgv~~~~a-s~~eIkkaYrkla~~~HPDk~~~----~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~  160 (201)
                      ....|||+||||++ ++ +..+||++||+|++++|||+++.    ..+.+.|+.|++||++|+||.+|+.||..+..
T Consensus        12 ~~~~~~y~iLgv~~-~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           12 CGLENCYDVLEVNR-EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TTTSCHHHHTTCCG-GGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHcCCCC-CCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            35679999999999 99 99999999999999999999986    44889999999999999999999999998854

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.8e-19  Score=130.53  Aligned_cols=62  Identities=27%  Similarity=0.478  Sum_probs=59.2

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHH
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE  152 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~  152 (201)
                      ...|||+||||++ +++..+||++||+|+++||||+++..++.+.|+.|++||++|+||.+|+
T Consensus        25 ~~~~~y~iLgv~~-~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           25 NSKDSWDMLGVKP-GASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             TCSSHHHHHTCCT-TCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cCCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence            4689999999999 9999999999999999999999998889999999999999999999876

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=3.4e-19  Score=145.13  Aligned_cols=71  Identities=27%  Similarity=0.405  Sum_probs=65.6

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT  163 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~  163 (201)
                      .|||+||||++ +++..+||++||+|++++|||+++ .+.+.++|+.|++||++|+||.+|+.||+++..+..
T Consensus         2 ~~~y~~l~~~~-~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSK-TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCT-TCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            58999999999 999999999999999999999996 455899999999999999999999999999876544

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=6.1e-19  Score=139.32  Aligned_cols=69  Identities=30%  Similarity=0.681  Sum_probs=63.7

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG-------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~-------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ...|||+||||++ +++.++||++||+|++++|||++....       +.+.|+.|++||++|+||.+|+.||..+.
T Consensus         8 ~~~~~y~iLgv~~-~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            8 PKKDWYSILGADP-SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCSHHHHHHTCCT-TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             CCCChhHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            3569999999999 999999999999999999999998763       67999999999999999999999998764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.72  E-value=3.1e-17  Score=142.21  Aligned_cols=115  Identities=29%  Similarity=0.333  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhh
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLF  121 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~  121 (201)
                      +..+|..++..|+++.|+..++++..++|....+...+..+..........++|.+||+.+ .++..+|+++|+++++++
T Consensus       332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~-~~~~~~~~~~y~~~~l~~  410 (450)
T 2y4t_A          332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR-NAKKQEIIKAYRKLALQW  410 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST-TCCTTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc-cCCHHHHHHHHHHHHHHh
Confidence            3444788899999999999999999999999888888877776656667789999999999 999999999999999999


Q ss_pred             CCCCCCCch----HHHHHHHHHHHHHHcCChhHHHHhhcc
Q 037661          122 KPDRCSSVG----ADTANKLINEAWEVLSDPKRREAYDLL  157 (201)
Q Consensus       122 HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~kR~~YD~~  157 (201)
                      |||+.+...    +++.|+.|++||++|+||++|..||++
T Consensus       411 ~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          411 HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            999998754    889999999999999999999999974

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.72  E-value=4.7e-19  Score=133.94  Aligned_cols=67  Identities=19%  Similarity=0.269  Sum_probs=61.5

Q ss_pred             hccCcchhccccCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCC
Q 037661           90 EKKSWYAVLGIRDHRAGV--DVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCF  160 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~--~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~  160 (201)
                      ...+||+||||++ +++.  .+||++||+|++++|||+++.   .++|+.|++||+||+||.+|+.||.++..
T Consensus         6 ~~~~~Y~iLgv~~-~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~~   74 (114)
T 1gh6_A            6 ESLQLMDLLGLER-SAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHHTTCCT-TSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             hhhhHHHHcCCCC-CCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhcccc
Confidence            3458999999999 9999  999999999999999999876   58999999999999999999999987753

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.72  E-value=4.6e-19  Score=155.82  Aligned_cols=69  Identities=38%  Similarity=0.642  Sum_probs=0.0

Q ss_pred             hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ..+|||+||||++ +|+.++||+|||+|+++||||+++...++++|++|++||++|+||.+|+.||+++.
T Consensus        26 ~~~d~Y~vLgv~~-~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           26 ELKDYYAILGVQP-TDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            3469999999999 99999999999999999999999887899999999999999999999999999854

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.71  E-value=5.7e-18  Score=136.23  Aligned_cols=66  Identities=26%  Similarity=0.540  Sum_probs=61.4

Q ss_pred             CcchhccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           93 SWYAVLGIRDHRA--GVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        93 d~Y~vLgv~~~~a--s~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      |||+||||++ ++  +..+||++||+|+++||||+++..+      +.+.|..|++||+||+||.+|+.||....
T Consensus         2 d~y~lLgl~~-~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            2 DYFTLFGLPA-RYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             HHHHHTTCCS-SSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CHHHHCCCCC-CCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            7999999999 98  9999999999999999999998764      55799999999999999999999998765

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.70  E-value=1.6e-18  Score=140.62  Aligned_cols=79  Identities=16%  Similarity=0.312  Sum_probs=68.2

Q ss_pred             hhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCCh
Q 037661           73 QGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSDP  148 (201)
Q Consensus        73 ~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp  148 (201)
                      ..++.++..+...  .+...|||+||||++ .++..+||++||+|+++||||+++...    +.+.|+.|++||++|+||
T Consensus       100 ~niRaLLssl~~v--l~~~~d~Y~vLgv~~-~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~  176 (182)
T 1n4c_A          100 RNIRALLSTMHTV--LWAGETKWKPVGMAD-LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ  176 (182)
T ss_dssp             TCHHHHHHHGGGG--SCTTCCCCCCCCGGG-GSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hcCccchhhcCCCCC-CCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCH
Confidence            4566677665543  345579999999999 999999999999999999999998665    789999999999999999


Q ss_pred             hHHHHh
Q 037661          149 KRREAY  154 (201)
Q Consensus       149 ~kR~~Y  154 (201)
                      .+|+.|
T Consensus       177 ~kR~~Y  182 (182)
T 1n4c_A          177 GQKPLY  182 (182)
T ss_dssp             HSSCCC
T ss_pred             HhhhhC
Confidence            999876

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.69  E-value=1e-17  Score=118.63  Aligned_cols=60  Identities=13%  Similarity=0.284  Sum_probs=55.7

Q ss_pred             cCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661           92 KSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD  155 (201)
Q Consensus        92 ~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD  155 (201)
                      .++|+||||++ +  ++..+||++||+|++++|||++..   .+.|+.|++||++|+|+.+|..++
T Consensus        11 ~~~y~iLgl~~-~~~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A           11 ERLLELLKLPR-QLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHTCCS-SSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHHHh
Confidence            48999999999 9  999999999999999999999764   689999999999999999998844

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.68  E-value=2.1e-18  Score=139.07  Aligned_cols=66  Identities=18%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             hccCcchhccccCCCCC--HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           90 EKKSWYAVLGIRDHRAG--VDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~as--~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ...|||+||||++ +++  .++||+|||++++++|||+++.   +++|+.|++||++|+||.+|+.||++|.
T Consensus         9 ~~~d~Y~vLGl~~-~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            9 ESLQLMDLLGLER-SAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHTTTCCG-GGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccHHHHcCCCC-CCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            3458999999999 998  6999999999999999999876   4899999999999999999999999986

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.68  E-value=2.1e-17  Score=136.66  Aligned_cols=69  Identities=22%  Similarity=0.453  Sum_probs=61.5

Q ss_pred             hccCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           90 EKKSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ...|||+||||++ .  ++..+||++||+|+++||||+++...      +.+.|+.|++||+||+||.+|+.||....
T Consensus        41 ~~~d~y~lLgv~~-~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~  117 (207)
T 3bvo_A           41 PTRDYFSLMDCNR-SFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH  117 (207)
T ss_dssp             TTCCHHHHTTSCS-CSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred             CCCCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence            4569999999998 6  78999999999999999999997653      56789999999999999999999996543

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.68  E-value=6.5e-18  Score=123.07  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=62.4

Q ss_pred             hhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCC
Q 037661           73 QGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSD  147 (201)
Q Consensus        73 ~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd  147 (201)
                      ..++.++..+...  .+...++|++|||.+ .++..+||+|||++++++|||+++...    |++.|+.|++||+||.+
T Consensus        16 ~~ir~lL~~l~~~--L~~~~~~y~~Lgv~~-~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           16 RNIRALLSTMHTV--LWAGETKWKPVGMAD-LVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             TCHHHHHHHGGGT--SCTTCCSCCCCCGGG-SSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH--hcccccCCeecCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            4578888888776  233368999999999 999999999999999999999997653    78999999999999964

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.68  E-value=1.2e-17  Score=124.68  Aligned_cols=81  Identities=16%  Similarity=0.267  Sum_probs=66.0

Q ss_pred             HHHhCCCc-hhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------hHHHHH
Q 037661           65 ARMKNPNH-QGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--------GADTAN  135 (201)
Q Consensus        65 a~~~~p~~-~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--------~a~~~f  135 (201)
                      ...+.+.. ..++.++..+...  .+...|||+|||++.  ++..+||++||++++++||||++..        .|+++|
T Consensus        15 i~~W~~~~~~~ir~lL~~l~~~--l~~~~d~Y~vl~~~~--As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F   90 (106)
T 3ag7_A           15 IRKWSSGKSGNIRSLLSTLQYI--LWSGSGWKPVPLMDM--IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVF   90 (106)
T ss_dssp             HHHHHTTTTTCHHHHHTTGGGT--SCTTSCCCCCCGGGS--CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHH--hcccCCHHHHcCCCC--CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHH
Confidence            34444444 3488888887764  456689999999874  9999999999999999999998642        268999


Q ss_pred             HHHHHHHHHcCChh
Q 037661          136 KLINEAWEVLSDPK  149 (201)
Q Consensus       136 ~~i~~Ay~vLsdp~  149 (201)
                      +.|++||++|+|+.
T Consensus        91 ~~I~~AYevLsd~~  104 (106)
T 3ag7_A           91 ELLQEAWDHFNTLG  104 (106)
T ss_dssp             HHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHcCcc
Confidence            99999999999985

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.65  E-value=2.9e-17  Score=118.74  Aligned_cols=59  Identities=17%  Similarity=0.062  Sum_probs=54.8

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHH
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRR  151 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR  151 (201)
                      .++|+||||.+ +++.++||++||+|+++||||+++...  +.+.|+.|++||++|+|...|
T Consensus        16 ~~~y~vLgv~~-~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           16 KEVTSVVEQAW-KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             HHHHHHHHHTT-SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            48999999999 999999999999999999999998753  789999999999999998766

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.61  E-value=1.8e-16  Score=128.60  Aligned_cols=68  Identities=22%  Similarity=0.409  Sum_probs=60.4

Q ss_pred             hhccCcchhc------cccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccC
Q 037661           89 AEKKSWYAVL------GIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLM  158 (201)
Q Consensus        89 ~~~~d~Y~vL------gv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~  158 (201)
                      ....|||+||      |+++.+++..+||++||+|++++|||+++.  +.+.|+.|++||+||+||.+|+.||..+
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            3456999999      455338999999999999999999999986  5789999999999999999999999865

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.60  E-value=1.5e-16  Score=151.82  Aligned_cols=75  Identities=25%  Similarity=0.372  Sum_probs=40.8

Q ss_pred             hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661           89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV  164 (201)
Q Consensus        89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~  164 (201)
                      ....|||+||||++ +|+.++||+|||+|+++||||+++ .+.+.++|+.|++||++|+||.+|+.||++|..+...
T Consensus        18 ~~~~~~y~~lg~~~-~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~   93 (780)
T 3apo_A           18 RHDQNFYSLLGVSK-TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   93 (780)
T ss_dssp             -----CHHHHTCCT-TCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred             CCCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence            45679999999999 999999999999999999999985 4458899999999999999999999999999765443

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.56  E-value=7.2e-16  Score=106.89  Aligned_cols=57  Identities=19%  Similarity=0.193  Sum_probs=50.2

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHH
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR  151 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR  151 (201)
                      .++|+||||++.+++.++||++||+|++++|||++..   .+.|+.|++||++|+|+..|
T Consensus        14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~---~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC---HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHhhhhhc
Confidence            3789999999713999999999999999999999643   68999999999999988654

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.83  E-value=3.2e-09  Score=72.21  Aligned_cols=50  Identities=20%  Similarity=0.209  Sum_probs=45.0

Q ss_pred             cchhccccCCC---CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCC
Q 037661           94 WYAVLGIRDHR---AGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD  147 (201)
Q Consensus        94 ~Y~vLgv~~~~---as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd  147 (201)
                      -|.||||++ .   ++.++|+++||+|....|||+...   ......|++|+++|..
T Consensus         6 A~~ILgv~~-~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS---~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            6 SCKILNIEE-SKGDLNMDKINNRFNYLFEVNDKEKGGS---FYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHTTCCG-GGTCCSHHHHHHHHHHHHHHTCGGGTCC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCC-CcCcCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHH
Confidence            378999999 8   999999999999999999999755   5788899999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.63  E-value=6.8e-05  Score=70.35  Aligned_cols=50  Identities=18%  Similarity=0.139  Sum_probs=39.2

Q ss_pred             HhhhccCcchhccccCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH
Q 037661           87 LAAEKKSWYAVLGIRDHRAGV--DVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEV  144 (201)
Q Consensus        87 ~~~~~~d~Y~vLgv~~~~as~--~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~v  144 (201)
                      +....+|||.+||++. +...  .+|+++||++++..+++       .+++..|..|+.|
T Consensus       624 ~~~~~~~~~~~lG~~~-~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          624 LKDNKASTNHILGFPF-TSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV  675 (681)
T ss_dssp             HTSCCCSSSEETTEES-SHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred             HHccCCCCcccCCCCC-ChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence            4566778999999987 4433  56999999999966554       5788889988876

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.15  E-value=0.018  Score=41.72  Aligned_cols=49  Identities=27%  Similarity=0.330  Sum_probs=39.7

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      -++||+..+++..+            +..+++.|+|++|+..+.++..++|....+...+.
T Consensus         6 a~inP~~a~~~~~~------------G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   54 (126)
T 4gco_A            6 AYINPELAQEEKNK------------GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRA   54 (126)
T ss_dssp             -CCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHh
Confidence            35777777777777            99999999999999999999999999865544443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.63  E-value=0.075  Score=40.19  Aligned_cols=54  Identities=11%  Similarity=0.105  Sum_probs=44.9

Q ss_pred             cccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           15 SLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        15 ~~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      ++..-..++|++..++...            |..++..|++++|+..+.++..++|....+-..+.
T Consensus        24 ~l~~al~l~p~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg   77 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSY------------AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLA   77 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHhCCCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3455667899999998888            99999999999999999999999998865544433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.42  E-value=0.0059  Score=44.40  Aligned_cols=81  Identities=14%  Similarity=0.064  Sum_probs=55.0

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcchhc
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYAVL   98 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~vL   98 (201)
                      .++|++..++..+            |..++..|++++|+..+.++..++|....+-..+..+....  .......|-++|
T Consensus        41 ~~~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al  108 (126)
T 4gco_A           41 KRDPENAILYSNR------------AACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL  108 (126)
T ss_dssp             HHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHH------------hhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4578888888888            99999999999999999999999998765544444433220  011223566677


Q ss_pred             cccCCCCCHHHHHHHHHH
Q 037661           99 GIRDHRAGVDVIKKRYEA  116 (201)
Q Consensus        99 gv~~~~as~~eIkkaYrk  116 (201)
                      .+.|   +..+++....+
T Consensus       109 ~l~P---~~~~a~~~l~~  123 (126)
T 4gco_A          109 QVDP---SNEEAREGVRN  123 (126)
T ss_dssp             HHCT---TCHHHHHHHHH
T ss_pred             HHCc---CCHHHHHHHHH
Confidence            7777   44555555444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.24  E-value=0.011  Score=43.85  Aligned_cols=42  Identities=2%  Similarity=-0.057  Sum_probs=30.0

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      +|.+...+..+            |..++..|+|+.|+..+.++..++|....+.
T Consensus        59 ~~~~~~~~~nl------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~  100 (162)
T 3rkv_A           59 DRKNIPLYANM------------SQCYLNIGDLHEAEETSSEVLKREETNEKAL  100 (162)
T ss_dssp             HHTHHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCcchHHH
Confidence            56666666666            7777777777777777777777777765443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.95  E-value=0.28  Score=35.33  Aligned_cols=53  Identities=13%  Similarity=0.065  Sum_probs=42.6

Q ss_pred             cccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           15 SLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        15 ~~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      ++.....++|++..++...            |..++..|++++|+..+.++..++|....+...+
T Consensus         6 ~l~~al~~~p~~~~~~~~~------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   58 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYAL------------GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL   58 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4566677889988888888            9999999999999999999999999886554333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=95.79  E-value=0.22  Score=35.71  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      .+.|.....++..+++.|+|++|+..|.+|..++|....+-..+
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nl   48 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNK   48 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhH
Confidence            46677888899999999999999999999999999876544333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=95.74  E-value=0.12  Score=40.19  Aligned_cols=47  Identities=11%  Similarity=0.128  Sum_probs=33.4

Q ss_pred             CCCCCChhh-HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           18 SSPFNNPEA-REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        18 ~~~~~~p~~-~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      .....+|.. ...+...            |..++..|+++.|+..+.++..+.|....+.
T Consensus        27 ~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   74 (252)
T 2ho1_A           27 LKTDKGRDEARDAYIQL------------GLGYLQRGNTEQAKVPLRKALEIDPSSADAH   74 (252)
T ss_dssp             ----CCHHHHHHHHHHH------------HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHH
T ss_pred             cccccchHHHHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCChHHHH
Confidence            345567776 5666666            8888899999999999999988888765433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.11  Score=36.46  Aligned_cols=39  Identities=15%  Similarity=0.137  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      +...|..++..|+|++|+..+.++..++|....+...+.
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a   45 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA   45 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            344477788888888888888888888877654443333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.45  E-value=0.51  Score=34.68  Aligned_cols=52  Identities=12%  Similarity=0.068  Sum_probs=41.4

Q ss_pred             ccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           16 LSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        16 ~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      +.....++|++..++...            |..++..|++++|+..+.++..++|....+...+
T Consensus        10 ~~~al~~~p~~~~~~~~~------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   61 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSL------------AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL   61 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHcCCHhhHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHH
Confidence            344456778877777777            9999999999999999999999999886554333

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.34  E-value=0.11  Score=38.39  Aligned_cols=51  Identities=8%  Similarity=-0.062  Sum_probs=37.5

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      ...+|++..+++.-            |..++..|+|+.|+..+.++..++|....+...+..+
T Consensus        24 ~~~~p~~~~~~~~l------------a~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~   74 (150)
T 4ga2_A           24 TPSPRQKSIKGFYF------------AKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLL   74 (150)
T ss_dssp             SCSHHHHHTTHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cccCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34566666666666            8888888888888888888888888876655554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.17  E-value=0.4  Score=35.22  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=35.8

Q ss_pred             hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           34 LADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        34 ~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      .+.+.+.....+|..++..|+++.|+..+.++..++|....+.
T Consensus        60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  102 (150)
T 4ga2_A           60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLV  102 (150)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHH
Confidence            3555566777788899999999999999999999999986543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.07  E-value=0.44  Score=31.78  Aligned_cols=39  Identities=21%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      .++.+..+|..++..|++++|+..+.++..+.|....+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   41 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGY   41 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            345667779999999999999999999999999875443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.05  E-value=0.055  Score=37.22  Aligned_cols=47  Identities=21%  Similarity=0.368  Sum_probs=37.0

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      .+|++..++...            |..++..|++++|+..+.++..++|....+...+.
T Consensus         2 ~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg   48 (100)
T 3ma5_A            2 EDPEDPFTRYAL------------AQEHLKHDNASRALALFEELVETDPDYVGTYYHLG   48 (100)
T ss_dssp             ---CCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             CCccCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            367777777777            99999999999999999999999998765444333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.02  E-value=0.16  Score=38.28  Aligned_cols=48  Identities=13%  Similarity=-0.086  Sum_probs=37.7

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      ++|++..++...            +..++..|++++|+..|.++..++|....+.-.+..
T Consensus        65 ~~P~~~~~~~~l------------g~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~  112 (151)
T 3gyz_A           65 YDFYNVDYIMGL------------AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ  112 (151)
T ss_dssp             HCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             hCCCCHHHHHHH------------HHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence            356666666655            999999999999999999999999998655444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=94.99  E-value=0.72  Score=33.74  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      .+..+..+|..++..|+|++|+..+.++..++|....+...+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~   52 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRA   52 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHH
Confidence            3444455599999999999999999999999998755443333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=94.93  E-value=0.58  Score=32.46  Aligned_cols=91  Identities=15%  Similarity=0.085  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHH
Q 037661           36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYE  115 (201)
Q Consensus        36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYr  115 (201)
                      .+.+.-...+|..++..|++++|+..+.++..++|....+...+..+...            +|      ..++-...|+
T Consensus        35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------~~------~~~~A~~~~~   96 (126)
T 3upv_A           35 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA------------VK------EYASALETLD   96 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------TT------CHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------Hh------CHHHHHHHHH
Confidence            33445566788889999999999999999999999876443333222211            11      2344555555


Q ss_pred             HHHHhhCCCCCCCchHHHHHHHHHHHHHHc
Q 037661          116 ALVQLFKPDRCSSVGADTANKLINEAWEVL  145 (201)
Q Consensus       116 kla~~~HPDk~~~~~a~~~f~~i~~Ay~vL  145 (201)
                      +. +...|+....+........+..+...|
T Consensus        97 ~a-l~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           97 AA-RTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HH-HHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HH-HHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            53 445555444444566666666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=94.81  E-value=0.071  Score=39.41  Aligned_cols=34  Identities=12%  Similarity=0.012  Sum_probs=29.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           43 KHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      ..+|..++..|++++|+..+.++..++|....+.
T Consensus        49 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   82 (164)
T 3sz7_A           49 SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW   82 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3448899999999999999999999999875443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.59  E-value=0.06  Score=37.67  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=18.7

Q ss_pred             HHHHHhcCC---HHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           46 AEELFKEEK---IDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        46 A~~~l~~~d---~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      |+.++..++   .+.|...+.+|..++|......-++.
T Consensus        13 a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg   50 (93)
T 3bee_A           13 ATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIA   50 (93)
T ss_dssp             HHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            555544443   45666666666666665554444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=94.56  E-value=0.69  Score=38.92  Aligned_cols=57  Identities=16%  Similarity=0.120  Sum_probs=36.1

Q ss_pred             CCCCCCCcccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661            8 SSSSSSSSLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus         8 ~~~~~~~~~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      +++.....+..-...+|++...+...            |..++..|+++.|+..+.++...+|....+.
T Consensus         7 ~~~~~~~~~~~~~~~~p~~~~~~~~~------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~   63 (450)
T 2y4t_A            7 HSSGVDLGTENLYFQSMADVEKHLEL------------GKKLLAAGQLADALSQFHAAVDGDPDNYIAY   63 (450)
T ss_dssp             ----------------CHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccccccccccccHHHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCccHHHH
Confidence            33334444455556688888888888            9999999999999999999999999875443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=94.54  E-value=0.12  Score=35.67  Aligned_cols=49  Identities=20%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             cccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           15 SLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        15 ~~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      .....+...|....++...            |..++..|+++.|+..+.++..++|....+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~   52 (133)
T 2lni_A            4 HHHHHSHMNPDLALMVKNK------------GNECFQKGDYPQAMKHYTEAIKRNPKDAKL   52 (133)
T ss_dssp             CCCTTCCSSSCHHHHHHHH------------HHHHHHTTCSHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCCCCCcCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence            3444555678888898888            999999999999999999999999977433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=94.25  E-value=0.04  Score=43.08  Aligned_cols=50  Identities=12%  Similarity=-0.026  Sum_probs=42.2

Q ss_pred             CCChhhHHHH----HHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           21 FNNPEAREAL----FSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        21 ~~~p~~~~~~----~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      .++|++.+++    ..+            +..+...|++++|+..|.+|..+.|.+.++..-+..+
T Consensus        92 e~~pd~~~A~~~~~~~r------------G~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSR------------ALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             CTTSTHHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             cCCCchHHHHHHHHHhH------------HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            4588998888    888            9999999999999999999999999886655444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=94.02  E-value=0.14  Score=36.46  Aligned_cols=34  Identities=12%  Similarity=0.163  Sum_probs=20.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      |..+++.|++++|+..+.++..++|....+...+
T Consensus        24 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l   57 (121)
T 1hxi_A           24 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL   57 (121)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            6666666666666666666666666654443333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=94.01  E-value=0.23  Score=32.06  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      |..++..|+++.|+..+.++..+.|....+.
T Consensus        16 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   46 (91)
T 1na3_A           16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAW   46 (91)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            7778888888888888888888887765443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=93.78  E-value=0.88  Score=29.83  Aligned_cols=41  Identities=7%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      +|++...+...            |..++..|++++|+..+.++..+.|....+
T Consensus         2 ~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   42 (112)
T 2kck_A            2 VDQNPEEYYLE------------GVLQYDAGNYTESIDLFEKAIQLDPEESKY   42 (112)
T ss_dssp             CCSSTTGGGGH------------HHHHHSSCCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             CCCcHHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence            55666666666            999999999999999999999999987543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=93.77  E-value=0.15  Score=35.64  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=37.2

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      +|++..++...            |..++..|++++|+..+.++..++|....+...+..
T Consensus        23 ~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A           23 GKDLAECYLGL------------GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             HHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CccHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            45555555555            999999999999999999999999998655444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=93.76  E-value=0.23  Score=33.09  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=17.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      ..|..++..|++++|+..+.++..++|....
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   35 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKD   35 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence            3455555666666666666666666655543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=93.70  E-value=0.03  Score=47.62  Aligned_cols=36  Identities=14%  Similarity=0.186  Sum_probs=15.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      |..++..|++++|+..+.++..++|....+...+..
T Consensus       271 g~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~  306 (338)
T 2if4_A          271 GKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA  306 (338)
T ss_dssp             HHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            666666666666666666666666665544444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.66  E-value=0.41  Score=39.45  Aligned_cols=31  Identities=19%  Similarity=0.158  Sum_probs=26.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      +|..++..|++++|...+.++..++|....+
T Consensus       206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          206 QAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            4667889999999999999999999987654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=93.51  E-value=0.11  Score=38.44  Aligned_cols=86  Identities=8%  Similarity=0.059  Sum_probs=54.7

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcchhcc
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYAVLG   99 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~vLg   99 (201)
                      ++|++..++...            |..++..|++++|+..+.++..++|....+...+..+....  .......|-++|.
T Consensus        50 ~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           50 LDHYDSRFFLGL------------GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            578888888888            99999999999999999999999998865544444333220  0011123445666


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q 037661          100 IRDHRAGVDVIKKRYEALVQ  119 (201)
Q Consensus       100 v~~~~as~~eIkkaYrkla~  119 (201)
                      +.+......+++.....+..
T Consensus       118 ~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A          118 LIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HHTTCGGGHHHHHHHHHHHH
T ss_pred             HCcCCCcchHHHHHHHHHHH
Confidence            65512333445544444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.41  E-value=0.2  Score=35.23  Aligned_cols=81  Identities=11%  Similarity=-0.006  Sum_probs=49.7

Q ss_pred             CChhh---HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcch
Q 037661           22 NNPEA---REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYA   96 (201)
Q Consensus        22 ~~p~~---~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~   96 (201)
                      ++|++   ...+...            |..++..|+++.|+..+.++..++|....+...+..+....  .......|-+
T Consensus        57 ~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  124 (148)
T 2dba_A           57 LDATPQDQAVLHRNR------------AACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR  124 (148)
T ss_dssp             SCCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HcccchHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45665   6666666            89999999999999999999999998754443333332220  0011123445


Q ss_pred             hccccCCCCCHHHHHHHHHHH
Q 037661           97 VLGIRDHRAGVDVIKKRYEAL  117 (201)
Q Consensus        97 vLgv~~~~as~~eIkkaYrkl  117 (201)
                      +|.+.+   ...++...+.++
T Consensus       125 al~~~p---~~~~~~~~l~~~  142 (148)
T 2dba_A          125 CVSLEP---KNKVFQEALRNI  142 (148)
T ss_dssp             HHHHCS---SCHHHHHHHHHH
T ss_pred             HHHcCC---CcHHHHHHHHHH
Confidence            666655   344455555444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=93.39  E-value=0.2  Score=36.81  Aligned_cols=41  Identities=12%  Similarity=0.003  Sum_probs=35.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCch-hHHhhHHHHHHH
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNHQ-GLNSHFACYVVH   85 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~v~   85 (201)
                      +|..++..|+++.|+..+.++..++|... .+...+..+...
T Consensus       103 ~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A          103 RAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            39999999999999999999999999987 667777766654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=93.38  E-value=0.22  Score=34.30  Aligned_cols=46  Identities=15%  Similarity=0.093  Sum_probs=36.3

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      ++|++..++...            |..++..|++++|+..+.++..++|....+...+
T Consensus        14 ~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   59 (115)
T 2kat_A           14 QGTDNMLLRFTL------------GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL   59 (115)
T ss_dssp             TTCCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCcHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            456666655555            9999999999999999999999999875444333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=93.25  E-value=0.29  Score=37.18  Aligned_cols=27  Identities=15%  Similarity=0.064  Sum_probs=14.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      |..++..|+++.|+..+.++..++|..
T Consensus        95 a~~~~~~~~~~~A~~~~~~al~~~p~~  121 (198)
T 2fbn_A           95 ATCYNKNKDYPKAIDHASKVLKIDKNN  121 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence            555555555555555555555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=93.17  E-value=1.4  Score=30.43  Aligned_cols=39  Identities=26%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      +..+|..++..|+|+.|+..+.++..++|....+...+.
T Consensus        12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~   50 (137)
T 3q49_B           12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRA   50 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence            333499999999999999999999999998765443333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=93.17  E-value=1.8  Score=31.69  Aligned_cols=27  Identities=15%  Similarity=0.277  Sum_probs=14.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      |..++..|++++|+..++++.+++|..
T Consensus        12 G~~~~~~g~~~~A~~~~~~al~~~p~~   38 (184)
T 3vtx_A           12 GDKKRTKGDFDGAIRAYKKVLKADPNN   38 (184)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            455555555555555555555555544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=93.16  E-value=0.23  Score=35.79  Aligned_cols=36  Identities=11%  Similarity=-0.023  Sum_probs=30.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      .+|..++..|+++.|+..+.++..++|....+.-.+
T Consensus        57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            348999999999999999999999999886554333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=93.12  E-value=0.3  Score=32.70  Aligned_cols=31  Identities=13%  Similarity=0.063  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      ...+|..++..|++++|+..+.++..++|..
T Consensus        41 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           41 YSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            3344999999999999999999999999987

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=92.95  E-value=0.24  Score=34.48  Aligned_cols=41  Identities=7%  Similarity=0.100  Sum_probs=33.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      +|..++..|++++|+..+.++..+.|....+......+...
T Consensus        67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            48899999999999999999999999988776655554433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=92.84  E-value=0.38  Score=33.15  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=24.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      |..++..|++++|+..+.++...+|..
T Consensus        46 g~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A           46 GESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            888889999999999999999888887

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=92.75  E-value=0.26  Score=42.49  Aligned_cols=41  Identities=15%  Similarity=0.075  Sum_probs=25.7

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      ++|.+...+...            |..++..|++++|+..+.+|..++|....
T Consensus       268 ~~~~~~~~~~nl------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~  308 (370)
T 1ihg_A          268 LQPVALSCVLNI------------GACKLKMSDWQGAVDSCLEALEIDPSNTK  308 (370)
T ss_dssp             GHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHHH------------HHHHHhccCHHHHHHHHHHHHHhCchhHH
Confidence            455666666555            66666666666666666666666665543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=92.69  E-value=0.2  Score=38.83  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=26.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      |..++..|++++|+..++++..++|....+...+.
T Consensus        95 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg  129 (208)
T 3urz_A           95 AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG  129 (208)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            77788888888888888888888887755443333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=92.66  E-value=0.35  Score=32.12  Aligned_cols=47  Identities=13%  Similarity=-0.009  Sum_probs=37.1

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      ++|++...+...            |..++..|+++.|+..+.++..++|....+...+.
T Consensus        33 ~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a   79 (118)
T 1elw_A           33 LDPHNHVLYSNR------------SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA   79 (118)
T ss_dssp             HCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HCCCcHHHHHHH------------HHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            356777777777            88999999999999999999999998755444433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=92.65  E-value=0.35  Score=38.83  Aligned_cols=30  Identities=17%  Similarity=0.186  Sum_probs=19.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      |..++..|+++.|+..+.++..++|....+
T Consensus       279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  308 (359)
T 3ieg_A          279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNA  308 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCcccHHH
Confidence            666666677777777777766666655433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=92.63  E-value=0.22  Score=42.01  Aligned_cols=31  Identities=16%  Similarity=0.054  Sum_probs=23.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      |..++..|++++|+..+.++..++|....+.
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  233 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSNNEKGL  233 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            7778888888888888888888887764443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=92.61  E-value=0.081  Score=38.08  Aligned_cols=41  Identities=17%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      ++|++..++..+            |..++..|+|++|+.++.++..+.|....
T Consensus        37 ~~p~~~~~~~nl------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A           37 LDPSNITFYNNK------------AAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hCCCCHHHHHhH------------HHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            466776666666            99999999999999999999999886543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=92.32  E-value=0.88  Score=30.04  Aligned_cols=40  Identities=23%  Similarity=0.122  Sum_probs=33.8

Q ss_pred             HHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           37 KEAE-ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        37 ~ea~-~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      +.+. ....+|..++..|++++|+..+.++..++|....+.
T Consensus        32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A           32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            3445 677788899999999999999999999999986554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=92.22  E-value=0.18  Score=44.55  Aligned_cols=30  Identities=17%  Similarity=0.044  Sum_probs=22.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      |..++..|+|+.|+..+.+|..++|....+
T Consensus       324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a  353 (457)
T 1kt0_A          324 AMCYLKLREYTKAVECCDKALGLDSANEKG  353 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence            777777777777777777777777766433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=92.09  E-value=2  Score=40.63  Aligned_cols=115  Identities=14%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH---------------H
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH---------------K   86 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~---------------~   86 (201)
                      ..|++.+++...            |..++..|++++|+..|++|.+++|....+...+..+...               .
T Consensus         4 s~P~~a~al~nL------------G~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~   71 (723)
T 4gyw_A            4 SCPTHADSLNNL------------ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR   71 (723)
T ss_dssp             --CHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            357777777777            9999999999999999999999999875443333322111               0


Q ss_pred             HhhhccCcchhcccc--CCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhH-HHHhhc
Q 037661           87 LAAEKKSWYAVLGIR--DHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR-REAYDL  156 (201)
Q Consensus        87 ~~~~~~d~Y~vLgv~--~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~k-R~~YD~  156 (201)
                      +.....+.|-.||.-  . .-..++-.+.|++ ++..+|+.      .+.+..+..+|..+++... ...|.+
T Consensus        72 l~P~~~~a~~nLg~~l~~-~g~~~~A~~~~~k-Al~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~  136 (723)
T 4gyw_A           72 ISPTFADAYSNMGNTLKE-MQDVQGALQCYTR-AIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRT  136 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH-HHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH-HHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            000111222233321  1 1133444455555 45667764      4677788889998887543 344443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=91.90  E-value=0.61  Score=31.41  Aligned_cols=43  Identities=19%  Similarity=0.142  Sum_probs=31.9

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHh
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNS   77 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~   77 (201)
                      +|++...+...            |..++..|+++.|+..+.++..+.|....+..
T Consensus        42 ~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   84 (131)
T 2vyi_A           42 NPANAVYFCNR------------AAAYSKLGNYAGAVQDCERAICIDPAYSKAYG   84 (131)
T ss_dssp             CTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCCHHHHHHH------------HHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence            56666666666            88888888888888888888888887654433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=91.90  E-value=1.7  Score=41.18  Aligned_cols=43  Identities=23%  Similarity=0.113  Sum_probs=31.3

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      .++|++..++...            |..+++.|++++|+..|++|.+++|....+
T Consensus        37 ~l~P~~~~a~~nL------------g~~l~~~g~~~eA~~~~~~Al~l~P~~~~a   79 (723)
T 4gyw_A           37 EVFPEFAAAHSNL------------ASVLQQQGKLQEALMHYKEAIRISPTFADA   79 (723)
T ss_dssp             HHCSCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            3577777777776            777777777777777777777777776433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=91.77  E-value=0.62  Score=32.42  Aligned_cols=38  Identities=16%  Similarity=0.030  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      +..+|..++..|+++.|+..+.++..++|....+...+
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B           46 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            33448889999999999999999999999875443333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=91.70  E-value=2  Score=28.74  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      .+..+..+|..++..|+++.|+..+.++..++|....+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   41 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYI   41 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Confidence            456677789999999999999999999999999875443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=91.70  E-value=0.2  Score=38.97  Aligned_cols=48  Identities=15%  Similarity=0.198  Sum_probs=37.0

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKE-----------EKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~-----------~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      .+||++..++...            +..+...           |++++|+..|++|..++|........+.
T Consensus        74 ~ldP~~~~A~~~L------------G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           74 LIDPKKDEAVWCI------------GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHCTTCHHHHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhCcCcHHHHHHH------------HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4567777777766            7777766           5999999999999999999865544444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=91.64  E-value=0.4  Score=37.33  Aligned_cols=45  Identities=24%  Similarity=0.208  Sum_probs=34.9

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhh
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSH   78 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~   78 (201)
                      ++|++..++...            |..++..|++++|+..+.++..++|....+...
T Consensus        34 ~~p~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~   78 (217)
T 2pl2_A           34 ENPQDPEALYWL------------ARTQLKLGLVNPALENGKTLVARTPRYLGGYMV   78 (217)
T ss_dssp             TSSSCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            456666666665            888999999999999999999999987544433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=91.60  E-value=0.37  Score=35.67  Aligned_cols=28  Identities=11%  Similarity=0.009  Sum_probs=14.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      |..++..|++++|+..++++..++|...
T Consensus       114 g~~~~~~g~~~~A~~~~~~~l~~~p~~~  141 (184)
T 3vtx_A          114 GLVYDSMGEHDKAIEAYEKTISIKPGFI  141 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence            4455555555555555555555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=91.58  E-value=0.43  Score=35.23  Aligned_cols=30  Identities=13%  Similarity=0.195  Sum_probs=16.8

Q ss_pred             HHH-HHhcCCH--HHHHHHHHHHHHhCCCchhH
Q 037661           46 AEE-LFKEEKI--DSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        46 A~~-~l~~~d~--~~A~~~~~~a~~~~p~~~~~   75 (201)
                      |.. ++..|++  +.|+..+.++..++|....+
T Consensus        85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~  117 (177)
T 2e2e_A           85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITA  117 (177)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHH
Confidence            555 4555555  66666666666666555433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=91.54  E-value=2.6  Score=29.59  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHh
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNS   77 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~   77 (201)
                      +..+|..++..|++++|+..+.++..++|....+..
T Consensus        54 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   89 (121)
T 1hxi_A           54 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA   89 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            344566788999999999999999999999865443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=91.46  E-value=1.6  Score=29.76  Aligned_cols=30  Identities=23%  Similarity=0.112  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      ..|..++..|++++|+..+.++...+|...
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~   36 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGV   36 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence            348999999999999999999999999886

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=91.42  E-value=3.3  Score=33.52  Aligned_cols=41  Identities=24%  Similarity=0.212  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      ..+...|..++..|++++|+..+.++..++|....+...+.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   45 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRA   45 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            34455599999999999999999999999998755444333

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=91.41  E-value=0.56  Score=30.83  Aligned_cols=31  Identities=10%  Similarity=0.002  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661           41 ASKHMAEELFKEEKIDSALCVVDRARMKNPN   71 (201)
Q Consensus        41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~   71 (201)
                      .+..+|..++..|+++.|+..+.++..+.|.
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3455689999999999999999999999998

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=91.41  E-value=0.56  Score=32.01  Aligned_cols=48  Identities=17%  Similarity=0.040  Sum_probs=37.5

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      .++|++...+...            |..++..|++++|+..+.++..++|....+...+.
T Consensus        44 ~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           44 KRNPKDAKLYSNR------------AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             TTCTTCHHHHHHH------------HHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HcCCCcHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            3577787777777            88899999999999999999999988754444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=91.11  E-value=0.22  Score=34.02  Aligned_cols=29  Identities=7%  Similarity=0.040  Sum_probs=25.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      +|..++..|++++|+..+.++..+.|...
T Consensus        47 lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A           47 LGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            39999999999999999999999877543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=91.08  E-value=2.5  Score=33.13  Aligned_cols=38  Identities=16%  Similarity=0.037  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      .-+.....+|..++..|+++.|+..+.++...+|....
T Consensus       146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          146 KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence            33445578899999999999999999999999998653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=91.05  E-value=0.57  Score=36.13  Aligned_cols=36  Identities=22%  Similarity=0.146  Sum_probs=31.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      +|..++..|++++|+..+.++..++|....+...+.
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   95 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA   95 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            699999999999999999999999999865544443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=90.97  E-value=0.61  Score=30.86  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      .+..+...|..++..|+++.|+..+.++..++|....+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   41 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY   41 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence            456677779999999999999999999999999875443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=90.82  E-value=0.99  Score=28.83  Aligned_cols=43  Identities=21%  Similarity=0.292  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      +.-+..+|..++..|++++|+..+.++..++|....+...+..
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3445567788999999999999999999999988655444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=90.59  E-value=0.87  Score=32.40  Aligned_cols=47  Identities=17%  Similarity=-0.041  Sum_probs=37.6

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      ++|++...+...            |..++..|+++.|+..+.++..++|....+...+.
T Consensus        42 ~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a   88 (166)
T 1a17_A           42 LNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   88 (166)
T ss_dssp             HSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            366777777777            99999999999999999999999998755444433

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=90.54  E-value=0.9  Score=30.94  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      +.+..++.+++.|++++|...+-+|...+|....+-.++
T Consensus        19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~   57 (73)
T 3ax2_A           19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL   57 (73)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            368899999999999999999999999999987554444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.39  E-value=3.2  Score=28.65  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=37.8

Q ss_pred             cCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           17 SSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        17 ~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      ......+|.....+...            |..++..|+++.|+..+.++..++|..
T Consensus        18 ~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (148)
T 2dba_A           18 PRPATPGASSVEQLRKE------------GNELFKCGDYGGALAAYTQALGLDATP   61 (148)
T ss_dssp             CCCCCTTCCCHHHHHHH------------HHHHHTTTCHHHHHHHHHHHHTSCCCH
T ss_pred             CcCCccchHHHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHcccc
Confidence            34455677788888877            999999999999999999999999986

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=90.30  E-value=0.93  Score=36.98  Aligned_cols=62  Identities=21%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      ..+++.+..++.+.-.+.+...+..|..++..|++++|+..+.++..++|....+...+..+
T Consensus        99 ~~~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~  160 (287)
T 3qou_A           99 PQPEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAET  160 (287)
T ss_dssp             CCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence            45666777777776777778889999999999999999999999999999987665555543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=90.06  E-value=1.2  Score=29.54  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      |..++..|+++.|+..+.++..+.|....+
T Consensus        50 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A           50 GNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence            778888888888888888888888776443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=89.75  E-value=0.99  Score=34.85  Aligned_cols=47  Identities=11%  Similarity=-0.007  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      .+.+.-+|..+++.|+|+.|++.++++.++.|....+..+...++..
T Consensus        71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A           71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  117 (152)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            45667779999999999999999999999999998777777766654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=89.20  E-value=4.3  Score=33.85  Aligned_cols=42  Identities=12%  Similarity=0.158  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      ..+..+|..++..|++++|+..+.++..++|....+...+..
T Consensus       231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~  272 (336)
T 1p5q_A          231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            344556778899999999999999999999988755444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=88.89  E-value=4.9  Score=30.87  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=27.8

Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           46 AEELFKE-----------EKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        46 A~~~l~~-----------~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      +..++..           |++++|+..+.++..++|....+...+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l  124 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR  124 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            7778888           999999999999999999876544333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=88.88  E-value=3.9  Score=34.95  Aligned_cols=41  Identities=15%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHH
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVV   84 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v   84 (201)
                      .+|..++..|++++|+..+++|.+++|....+...+..+..
T Consensus       312 ~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          312 RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  352 (370)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            33899999999999999999999999988766655555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=88.52  E-value=1.1  Score=34.25  Aligned_cols=28  Identities=4%  Similarity=0.039  Sum_probs=19.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      |..++..|++++|+..+.++..++|...
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            6666777777777777777777777655

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=88.49  E-value=1.2  Score=31.78  Aligned_cols=49  Identities=18%  Similarity=0.211  Sum_probs=39.4

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      |++..++++.+        .+..++.++..|+++.|+..+-+|...+|....+-.++
T Consensus        12 d~e~~e~~Fl~--------eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~   60 (95)
T 1om2_A           12 DAEAVQKFFLE--------EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL   60 (95)
T ss_dssp             SHHHHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHHHHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            55666666655        68899999999999999999999999999986554333

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=88.44  E-value=1  Score=33.50  Aligned_cols=32  Identities=13%  Similarity=-0.027  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      -....|..++..|++++|+..+.++.+++|..
T Consensus       110 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          110 LACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            33445778888888888888888888888865

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=87.99  E-value=0.62  Score=31.92  Aligned_cols=31  Identities=10%  Similarity=-0.009  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      +..+|..++..|++++|+..+.++..+.|..
T Consensus        56 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           56 WKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            3445889999999999999999999988754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=87.92  E-value=0.94  Score=33.29  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHh
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNS   77 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~   77 (201)
                      .+.-+..+|..++..|+++.|+..+.++..++|....+..
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   82 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA   82 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            3344555699999999999999999999999998754433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=87.92  E-value=1.4  Score=33.10  Aligned_cols=28  Identities=18%  Similarity=0.160  Sum_probs=17.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      +|..++..|++++|+..+.++..+.|..
T Consensus        77 lg~~~~~~~~~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           77 RGMLYYQTEKYDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence            3566666666666666666666666654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=87.86  E-value=0.68  Score=35.93  Aligned_cols=37  Identities=16%  Similarity=-0.032  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      ..+|..++..+..++..|+|++|+..|.+|.++.|..
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~   44 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM   44 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Confidence            4578899999999999999999999999999999983

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=87.57  E-value=7.3  Score=34.50  Aligned_cols=45  Identities=16%  Similarity=0.107  Sum_probs=31.0

Q ss_pred             CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      ..++|++..++...            |..++..|++++|+..++++..++|....+.
T Consensus        16 l~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   60 (568)
T 2vsy_A           16 VRHRPQDFVAWLML------------ADAELGMGDTTAGEMAVQRGLALHPGHPEAV   60 (568)
T ss_dssp             -----CCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHTTSTTCHHHH
T ss_pred             HHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34566666666555            8888888888888888888888888775443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=87.40  E-value=0.87  Score=34.72  Aligned_cols=48  Identities=23%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      +|.+...+...            |..++..|+++.|+..+.++..+.|....+...+..+
T Consensus       169 ~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  216 (258)
T 3uq3_A          169 APEDARGYSNR------------AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA  216 (258)
T ss_dssp             CTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcccHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            56666666666            8888899999999999999999888876665555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=87.06  E-value=11  Score=33.34  Aligned_cols=36  Identities=14%  Similarity=0.334  Sum_probs=29.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      .+|..++..|++++|+..++++..++|....+...+
T Consensus        62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   97 (568)
T 2vsy_A           62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL   97 (568)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            348899999999999999999999999875444333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=87.05  E-value=7.8  Score=28.89  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      ...+..+...|..++..|+|+.|+..+.++..+.|...
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~   72 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE   72 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence            34567788889999999999999999999999988764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=86.88  E-value=1.4  Score=33.40  Aligned_cols=46  Identities=13%  Similarity=-0.012  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      +.+.-+|..+++.|+|..|++++....++.|....+..+...++-.
T Consensus        79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~k  124 (134)
T 3o48_A           79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  124 (134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            5567789999999999999999999999999998887777766654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=86.62  E-value=5  Score=37.12  Aligned_cols=38  Identities=11%  Similarity=-0.114  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      ...+|..++..|++++|+..+.++..++|....+...+
T Consensus       436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  473 (681)
T 2pzi_A          436 PLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYR  473 (681)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHH
Confidence            33446678899999999999999999999885544333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=86.47  E-value=8.2  Score=33.72  Aligned_cols=36  Identities=17%  Similarity=0.028  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      +.+..+...+..++..|+|+.|+..|.+|..++|..
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~  301 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME  301 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Confidence            445556666999999999999999999999999987

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=86.22  E-value=9.7  Score=29.18  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=27.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      ...+|..++..|+|++|+..+.++..++|....+
T Consensus        44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~   77 (225)
T 2yhc_A           44 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI   77 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence            4445888889999999999999999999987643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=86.13  E-value=10  Score=29.41  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=24.9

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      .++|++..+++..            |..++..|+|++|+..+.++...+|..
T Consensus         9 ~~~~~~~~~~~~~------------a~~~~~~g~~~~A~~~~~~~l~~~p~~   48 (261)
T 3qky_A            9 RLRHSSPQEAFER------------AMEFYNQGKYDRAIEYFKAVFTYGRTH   48 (261)
T ss_dssp             --CCSSHHHHHHH------------HHHHHHTTCHHHHHHHHHHHGGGCSCS
T ss_pred             CCCCCCHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            3566666777666            666666666666666666666666655

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=86.03  E-value=9.2  Score=28.74  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      +.+++.+..+|..++..|+++.|+..+.++..++ ...
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~   38 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI   38 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH
Confidence            4677888888999999999999999999999998 443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=86.00  E-value=8.6  Score=30.94  Aligned_cols=29  Identities=17%  Similarity=0.013  Sum_probs=21.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      |..++..|+++.|+..+.++..+.|....
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~  252 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAALSVRPNDYL  252 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence            77777777777777777777777776543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=85.95  E-value=1.7  Score=35.33  Aligned_cols=33  Identities=12%  Similarity=0.068  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      .....+|..++..|++++|+..+.++.+.+|..
T Consensus       220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            344455889999999999999999999999987

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=85.88  E-value=2.2  Score=31.91  Aligned_cols=46  Identities=11%  Similarity=-0.003  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      +.+.-+|..+++.|+|..|++++....++.|....+..+...++-.
T Consensus        75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A           75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  120 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4556679999999999999999999999999998777766655543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=85.82  E-value=3.4  Score=27.58  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV   83 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   83 (201)
                      +.-+..+|..++..|+++.|+..+.++..+.|.. .+...+..+.
T Consensus        79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~  122 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            3445666889999999999999999999999954 3444444433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=85.41  E-value=3.6  Score=35.22  Aligned_cols=47  Identities=17%  Similarity=0.191  Sum_probs=37.2

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      ..+.++.+...|..++..|++++|+..+.++..++|....+...+..
T Consensus        21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   67 (537)
T 3fp2_A           21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISA   67 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence            34467888889999999999999999999999999988654444433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=85.35  E-value=13  Score=30.01  Aligned_cols=36  Identities=11%  Similarity=0.150  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      .-+..++..++..|++++|+..+.++..++|....+
T Consensus       214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  249 (365)
T 4eqf_A          214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL  249 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            344556888899999999999999999999987543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=84.78  E-value=2.4  Score=37.64  Aligned_cols=38  Identities=13%  Similarity=0.090  Sum_probs=30.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      +|..++..|++++|+..++++..+.|....+...+..+
T Consensus        80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            37888899999999999999999998876665555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=83.68  E-value=14  Score=28.85  Aligned_cols=39  Identities=23%  Similarity=0.163  Sum_probs=25.8

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      +|++...+...            |..++..|++++|+..+.++..++|...
T Consensus       168 ~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~  206 (327)
T 3cv0_A          168 NPNDAQLHASL------------GVLYNLSNNYDSAAANLRRAVELRPDDA  206 (327)
T ss_dssp             STTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCCHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            45555555555            6667777777777777777777776653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=83.63  E-value=4.4  Score=27.79  Aligned_cols=43  Identities=16%  Similarity=0.344  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661           41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV   83 (201)
Q Consensus        41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   83 (201)
                      -....|..+++.|+++.|+..++++..+.|....+..-+..++
T Consensus        48 i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~   90 (104)
T 2v5f_A           48 VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence            3456688899999999999999999999999976644444333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=83.55  E-value=3.1  Score=30.76  Aligned_cols=28  Identities=18%  Similarity=0.328  Sum_probs=19.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      |..++..|+++.|+..+.++..++|...
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~   42 (225)
T 2vq2_A           15 AMEYMRGQDYRQATASIEDALKSDPKNE   42 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCccch
Confidence            6667777777777777777776666553

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=83.38  E-value=13  Score=28.32  Aligned_cols=43  Identities=9%  Similarity=-0.136  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      ..+.-+..+|..++..|+++.|+..+.++..++|....+...+
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l   83 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL   83 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            3445556669999999999999999999999999875444333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=83.16  E-value=9.6  Score=26.62  Aligned_cols=40  Identities=28%  Similarity=0.309  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      +.+..+..+|..++..|+++.|+..+.++..+.|....+.
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   50 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYY   50 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Confidence            4567778889999999999999999999999999875443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=83.09  E-value=1.7  Score=35.23  Aligned_cols=30  Identities=20%  Similarity=0.059  Sum_probs=23.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      |..++..|++++|+..+.++..++|....+
T Consensus        45 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~   74 (281)
T 2c2l_A           45 ALCYLKMQQPEQALADCRRALELDGQSVKA   74 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence            777888888888888888888888876433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=83.05  E-value=2.6  Score=32.45  Aligned_cols=32  Identities=16%  Similarity=0.078  Sum_probs=25.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      .+|..++..|++++|+..+.++..++|....+
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  113 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA  113 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCccccHH
Confidence            34667888888888888888888888876443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=82.99  E-value=2.3  Score=32.94  Aligned_cols=46  Identities=13%  Similarity=0.009  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      +....++..+...|++++|+..+.++..++|....+.+.+..+...
T Consensus       222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence            4455578899999999999999999999999998887777665443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=82.73  E-value=0.41  Score=35.70  Aligned_cols=31  Identities=16%  Similarity=0.183  Sum_probs=16.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQG   74 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~   74 (201)
                      ..|..++..|++++|+..+.++..++|....
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~   41 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQSRGD   41 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence            3355555555555555555555555555433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=82.66  E-value=2.3  Score=32.47  Aligned_cols=32  Identities=13%  Similarity=0.123  Sum_probs=25.5

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           51 KEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        51 ~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      ..+++++|+..++++..+.|....+..++..+
T Consensus       192 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          192 ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            33445999999999999999998777766554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=82.62  E-value=14  Score=28.20  Aligned_cols=35  Identities=23%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      .+..|..++..|+++.|+..+.++..++|....+.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   40 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY   40 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence            45569999999999999999999999999875443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=82.47  E-value=13  Score=27.51  Aligned_cols=35  Identities=6%  Similarity=-0.093  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      -+..+|..++..|++++|+..+.++..++|....+
T Consensus        39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   73 (213)
T 1hh8_A           39 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA   73 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence            34455888899999999999999999998876543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=82.42  E-value=2.1  Score=37.02  Aligned_cols=29  Identities=10%  Similarity=0.075  Sum_probs=20.3

Q ss_pred             HHHHHHhcCC-HHHHHHHHHHHHHhCCCch
Q 037661           45 MAEELFKEEK-IDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        45 ~A~~~l~~~d-~~~A~~~~~~a~~~~p~~~   73 (201)
                      ++..++..|+ +++|+.++.++..++|...
T Consensus       137 ~g~~l~~~g~d~~eAl~~~~~al~l~P~~~  166 (382)
T 2h6f_A          137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNY  166 (382)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence            3556666774 7777777777777777663

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=82.42  E-value=8.7  Score=32.40  Aligned_cols=95  Identities=15%  Similarity=0.071  Sum_probs=54.6

Q ss_pred             HHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHH
Q 037661           42 SKHMAEELFK---EEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALV  118 (201)
Q Consensus        42 ~~~~A~~~l~---~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla  118 (201)
                      +..+|..++.   .|+++.|+..+.++..+.|....+...+..+...            +|      ..++-...|++ +
T Consensus       415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~------------~g------~~~~A~~~~~~-a  475 (514)
T 2gw1_A          415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ------------QE------DIDEAITLFEE-S  475 (514)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------TT------CHHHHHHHHHH-H
T ss_pred             HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH------------hc------CHHHHHHHHHH-H
Confidence            3445667777   9999999999999999999876443333222211            11      23334444444 4


Q ss_pred             HhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661          119 QLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD  155 (201)
Q Consensus       119 ~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD  155 (201)
                      +...|+.............+.....++.+|+.+..|.
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (514)
T 2gw1_A          476 ADLARTMEEKLQAITFAEAAKVQQRIRSDPVLAKKIQ  512 (514)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHTSTHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHhhCCHHHHHHhh
Confidence            4555643221112223333344456678888877765

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=82.20  E-value=3.5  Score=31.60  Aligned_cols=46  Identities=13%  Similarity=-0.012  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      +.+.-+|..+++.|+|..|++++....++.|....+..+...++..
T Consensus        78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~  123 (144)
T 1y8m_A           78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  123 (144)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            4556679999999999999999999999999998777776665544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=81.79  E-value=17  Score=28.58  Aligned_cols=56  Identities=18%  Similarity=0.120  Sum_probs=42.8

Q ss_pred             hhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           25 EAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        25 ~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      ++...+...+.-..+...+..|..++..|++++|+..+.++....|....+...+.
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A          106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            66666655555555666777789999999999999999999999998765444333

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=81.65  E-value=1.2  Score=38.68  Aligned_cols=28  Identities=14%  Similarity=0.039  Sum_probs=21.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      +..+...|++++|+.++.++..++|...
T Consensus       207 g~~~~~~g~~~eAl~~~~~al~l~P~~~  234 (382)
T 2h6f_A          207 QWVIQEFKLWDNELQYVDQLLKEDVRNN  234 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence            6777777777778888888777777653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=81.45  E-value=13  Score=27.11  Aligned_cols=34  Identities=18%  Similarity=-0.044  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      ...+|..++..|+++.|+..+.++..+.|....+
T Consensus        45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   78 (225)
T 2vq2_A           45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI   78 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence            3345778899999999999999999999986543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=81.42  E-value=15  Score=27.73  Aligned_cols=38  Identities=16%  Similarity=0.017  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      +.....+|..++..|++++|+..+.++..+.|....+.
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  108 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL  108 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence            34455567889999999999999999999999875443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=81.27  E-value=9.3  Score=25.16  Aligned_cols=36  Identities=22%  Similarity=0.187  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      .+..+|..++..|+++.|+..+.++..+.|....+.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   49 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYF   49 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHH
Confidence            334449999999999999999999999999875443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=81.23  E-value=1.9  Score=32.55  Aligned_cols=45  Identities=24%  Similarity=0.231  Sum_probs=31.9

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      +|++...+...            |..++..|+++.|+..+.++....|....+...+
T Consensus       155 ~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  199 (243)
T 2q7f_A          155 NENDTEARFQF------------GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA  199 (243)
T ss_dssp             CTTCHHHHHHH------------HHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            45555555555            8888888888888888888888888765444333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=81.16  E-value=2.4  Score=29.22  Aligned_cols=32  Identities=13%  Similarity=0.062  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNP   70 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p   70 (201)
                      ++-|.+++..++..++|..|+..++.|....+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~   36 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLD   36 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence            56799999999999999999999999998753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=81.03  E-value=7.2  Score=34.13  Aligned_cols=28  Identities=11%  Similarity=0.065  Sum_probs=24.4

Q ss_pred             HHHHHHHHhc--------CCHHHHHHHHHHHHHhCC
Q 037661           43 KHMAEELFKE--------EKIDSALCVVDRARMKNP   70 (201)
Q Consensus        43 ~~~A~~~l~~--------~d~~~A~~~~~~a~~~~p   70 (201)
                      ..+|..++..        |++++|+..+.++..++|
T Consensus       217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence            3447778888        999999999999999999

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=80.93  E-value=3  Score=35.70  Aligned_cols=45  Identities=9%  Similarity=0.088  Sum_probs=35.3

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      +|++..++...            |..++..|++++|+..+.++..++|....+...+
T Consensus        55 ~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   99 (537)
T 3fp2_A           55 DPNEPVFYSNI------------SACYISTGDLEKVIEFTTKALEIKPDHSKALLRR   99 (537)
T ss_dssp             CTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            45555555555            9999999999999999999999999875544333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=80.58  E-value=3.9  Score=33.08  Aligned_cols=32  Identities=16%  Similarity=0.133  Sum_probs=25.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      +|..++..|+++.|+..+.++..++|....+.
T Consensus       104 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  135 (368)
T 1fch_A          104 LGTTQAENEQELLAISALRRCLELKPDNQTAL  135 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHH
Confidence            46778888999999999999999888765443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=80.05  E-value=5.6  Score=26.28  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=13.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      |..++..|+++.|+..+.++..+.|..
T Consensus        42 a~~~~~~~~~~~A~~~~~~~~~~~~~~   68 (136)
T 2fo7_A           42 GNAYYKQGDYDEAIEYYQKALELDPRS   68 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence            444455555555555555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-10
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-09
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-08
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	1e-08
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	5e-08
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	5e-08
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	9e-07
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	0.001

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (128), Expect = 2e-10
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN-------KLINEAWE 143
           KK WY++LG  D  A +  +K++Y+ L+ L+ PD+ S+                I++AW+
Sbjct: 15  KKDWYSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73

Query: 144 VLSDPKRREAYDL 156
           +L + + ++ YDL
Sbjct: 74  ILGNEETKKKYDL 86

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 89  AEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
           A+K+    +L + R        +++ Y+    L  PD+    G+    + +N  W     
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKT 64

Query: 148 PKRREAYDL 156
                  +L
Sbjct: 65  EVYNLRMNL 73

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 1e-08
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR 150
            K +Y  LG+    A  + IK+ Y      + PD+    GA+   K I EA++VLSDP++
Sbjct: 2   GKDYYQTLGL-ARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 151 REAYD 155
           RE +D
Sbjct: 61  REIFD 65

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (113), Expect = 1e-08
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 94  WYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADT------ANKLINEAWEVLS 146
           ++ + G+   ++     +  R++ L + + PD+ +S            +  IN+AW+ L 
Sbjct: 3   YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62

Query: 147 DPKRREAYDL 156
            P  R  Y L
Sbjct: 63  HPLMRAEYLL 72

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.9 bits (111), Expect = 5e-08
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 90  EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN----KLINEAWEVL 145
             ++ +  +G+ D     + +KK Y   V +  PD+ +    +         +N+AW   
Sbjct: 31  AGETKWKPVGMADL-VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 89

Query: 146 SDPKRREAY 154
            +  ++  Y
Sbjct: 90  ENQGQKPLY 98

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 46.2 bits (109), Expect = 5e-08
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 91  KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN-KLINEAWEVLSDPK 149
           K+ +Y +LG+    A    I+K Y+ L   + PDR        A  K I EA+EVL+D +
Sbjct: 2   KQDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 150 RREAYD 155
           +R AYD
Sbjct: 61  KRAAYD 66

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 44.0 bits (103), Expect = 9e-07
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 87  LAAEKKSWYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVL 145
           +  E      +LG+ R     + +++K Y    + F PD+      +   K +N  ++ +
Sbjct: 3   MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKM 59

Query: 146 SDPKRREAYDLLMCFDKTVQIQAENQDP 173
            D  +         F    +I     D 
Sbjct: 60  EDGVKYAHQPDFGGFWDATEIPTYGTDE 87

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.001
 Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 3/66 (4%)

Query: 92  KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPD--RCSSVGADTANKLINEAWEVLSDPK 149
           K   +V+     +      KK    L   + PD    +   A+   K +      L    
Sbjct: 16  KEVTSVVEQ-AWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQA 74

Query: 150 RREAYD 155
             +   
Sbjct: 75  FLDQNA 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.83
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.82
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.74
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.74
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.63
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.66
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.49
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.37
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.36
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.22
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.2
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.71
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.11
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	94.91
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.42
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.24
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.04
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	93.62
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	93.36
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	92.79
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	92.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	92.68
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	91.36
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	90.85
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	90.74
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	90.72
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	90.67
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	90.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	90.33
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	89.73
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	89.67
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	88.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	87.22
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	86.77
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	85.73
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	85.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	83.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	82.33
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	80.23

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.3e-23  Score=146.06  Aligned_cols=70  Identities=36%  Similarity=0.562  Sum_probs=64.9

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDLLMCFD  161 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~  161 (201)
                      .+|||+||||++ +|+..+||++||++++++|||+++.. .+++.|..|++||+||+||.+|..||++|..+
T Consensus         2 k~dyY~vLgv~~-~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           2 KQDYYEILGVSK-TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCCTTTTTCCSS-SCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCCHHHHcCCCC-CcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccc
Confidence            479999999999 99999999999999999999998764 47888999999999999999999999998654

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.4e-23  Score=143.58  Aligned_cols=71  Identities=34%  Similarity=0.520  Sum_probs=67.3

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK  162 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~  162 (201)
                      .+|||+||||++ +++.++|+++|+++++++|||++..+.+.+.|+.|++||+||+||.+|+.||++|..+.
T Consensus         2 ~kdyY~iLgv~~-~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           2 GKDYYQTLGLAR-GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCT-TCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCChHHHcCCCC-CcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            369999999999 99999999999999999999999998899999999999999999999999999887654

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.1e-21  Score=141.80  Aligned_cols=68  Identities=31%  Similarity=0.636  Sum_probs=62.7

Q ss_pred             ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG-------ADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~-------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      .+|||+||||++ +++..+||++|++|+++||||++....       +++.|+.|++||+||+||.+|+.||..+.
T Consensus        15 ~~d~Y~iLgv~~-~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          15 KKDWYSILGADP-SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             CSCHHHHTTCCT-TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             ccChHHHcCCCC-CcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            469999999999 999999999999999999999987643       78899999999999999999999997754

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.82  E-value=1.6e-22  Score=150.95  Aligned_cols=73  Identities=18%  Similarity=0.275  Sum_probs=64.5

Q ss_pred             hhhccCcchhccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661           88 AAEKKSWYAVLGIRDHRA--GVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV  164 (201)
Q Consensus        88 ~~~~~d~Y~vLgv~~~~a--s~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~  164 (201)
                      .....|||+||||++ +|  +.++||+|||+||+++||||+++   .++|+.|++||+||+||.+|+.||.++......
T Consensus         4 ~~~~~~ly~iLGv~~-~a~~~~~~IKkAYrkla~k~HPDk~~~---~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~~~~   78 (114)
T d1gh6a_           4 REESLQLMDLLGLER-SAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDAT   78 (114)
T ss_dssp             HHHHHHHHHHTTCCT-TSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCCCC
T ss_pred             hHHHHHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHhcccchhh---HHHHHHHHHHHHHhCCHHHHHHHhccCCCCccc
Confidence            345679999999999 98  78899999999999999999876   478999999999999999999999887655443

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=4.3e-19  Score=123.04  Aligned_cols=65  Identities=26%  Similarity=0.549  Sum_probs=58.2

Q ss_pred             CcchhccccCCCCC--HHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccC
Q 037661           93 SWYAVLGIRDHRAG--VDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLM  158 (201)
Q Consensus        93 d~Y~vLgv~~~~as--~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~  158 (201)
                      |||+||||++ .++  .++||++||++++++|||+....+      +.+.|..|++||+||+||.+|+.|+...
T Consensus         2 nyy~lLgl~~-~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           2 DYFTLFGLPA-RYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             HHHHHTTCCS-SSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             ChHHHCCCCC-CCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            8999999998 654  899999999999999999986654      6788999999999999999999998654

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.74  E-value=3.1e-19  Score=125.00  Aligned_cols=66  Identities=15%  Similarity=0.258  Sum_probs=60.2

Q ss_pred             hccCcchhccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661           90 EKKSWYAVLGIRDHRA--GVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC  159 (201)
Q Consensus        90 ~~~d~Y~vLgv~~~~a--s~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~  159 (201)
                      ...+||+||||++ ++  +..+||++||+++++||||++..   .+.|++|++||++|+|+.+|..||.++.
T Consensus         9 ~~~~~y~iLgl~~-~~~~~~~~IkkaYr~l~~~~HPDk~g~---~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_           9 DKERLLELLKLPR-QLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHHTCCS-SSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHhCCCC-CCCCCHHHHHHHHHHHHHHhCcccCCC---HHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            3458999999999 87  89999999999999999999865   6899999999999999999999998764

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=9.7e-19  Score=127.13  Aligned_cols=79  Identities=16%  Similarity=0.312  Sum_probs=66.9

Q ss_pred             hhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCCh
Q 037661           73 QGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSDP  148 (201)
Q Consensus        73 ~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp  148 (201)
                      ..++.++..+...  .+...++|++|||.. .++..+||++||++++.+|||+++...    +++.|+.|++||++|+||
T Consensus        16 ~~ir~lL~~l~~v--l~~~~~~y~~Lgl~~-~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~   92 (98)
T d1nz6a_          16 RNIRALLSTMHTV--LWAGETKWKPVGMAD-LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ   92 (98)
T ss_dssp             TCHHHHHTTGGGT--SCTTCCSCCCCCGGG-CCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHhhhhh--cCCcccCCeecCCCc-cCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCH
Confidence            3455666554333  255668899999999 999999999999999999999988765    788999999999999999


Q ss_pred             hHHHHh
Q 037661          149 KRREAY  154 (201)
Q Consensus       149 ~kR~~Y  154 (201)
                      .+|+.|
T Consensus        93 ~~R~~Y   98 (98)
T d1nz6a_          93 GQKPLY   98 (98)
T ss_dssp             TCCCCC
T ss_pred             HHHhcC
Confidence            999876

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.2e-17  Score=114.92  Aligned_cols=65  Identities=17%  Similarity=0.059  Sum_probs=57.4

Q ss_pred             cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhhccCCC
Q 037661           92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYDLLMCF  160 (201)
Q Consensus        92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~  160 (201)
                      +++|+||||.. +++.++||+|||+|+++||||+++...  +.+.|+.|++||++|+   ++..||.....
T Consensus        16 ~~~y~iL~v~~-~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~~   82 (88)
T d1iura_          16 KEVTSVVEQAW-KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNADR   82 (88)
T ss_dssp             HHHHHHHHHTT-SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSSSC
T ss_pred             HHHHHHhCCCC-CCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccchH
Confidence            48999999999 999999999999999999999988654  8899999999999996   46677766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.66  E-value=0.0021  Score=46.99  Aligned_cols=52  Identities=15%  Similarity=0.103  Sum_probs=36.1

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVV   84 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v   84 (201)
                      .++|.+++++..+            |..++..|+|+.|+..+.++..++|....+...+..+..
T Consensus        95 ~~~p~~~ka~~~~------------g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          95 KIDKNNVKALYKL------------GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHSTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHh------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3567777777777            777777777777777777777777777666555554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0023  Score=47.60  Aligned_cols=48  Identities=13%  Similarity=0.190  Sum_probs=27.3

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      ++|+++.++..+            |..++..|+++.|+.+++++..++|....+...+..
T Consensus        91 ~~p~~~~a~~~~------------g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~  138 (170)
T d1p5qa1          91 LDSNNEKGLSRR------------GEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  138 (170)
T ss_dssp             HCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             ccccchhhhHHH------------HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            355555555555            666666666666666666666666655544444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.056  Score=38.65  Aligned_cols=47  Identities=23%  Similarity=0.226  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661           37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV   83 (201)
Q Consensus        37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   83 (201)
                      +.|++++..|..+++.|+|+.|+..|.++..++|....+...+..+.
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~   54 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAY   54 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHH
Confidence            56788889999999999999999999999999999876655555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.031  Score=40.65  Aligned_cols=46  Identities=24%  Similarity=0.185  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV   83 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   83 (201)
                      +|+.+++.+..++..|+|+.|+..|.+|..++|....+-..+..+-
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y   48 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCY   48 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH
Confidence            3667888899999999999999999999999999876655555443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.22  E-value=0.0077  Score=44.11  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=19.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      |..++..|+++.|+..+.++..++|....+...+..
T Consensus       118 g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1         118 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            555555555555555555555555555444444333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.20  E-value=0.0045  Score=45.64  Aligned_cols=48  Identities=13%  Similarity=0.195  Sum_probs=26.5

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      +||++.+++..+            |..++..|+++.|+.++.++..++|....+...+..
T Consensus        93 l~p~~~~a~~~~------------~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          93 LDSANEKGLYRR------------GEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             cccchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            355555555555            555556666666666666665555555544444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0048  Score=42.86  Aligned_cols=82  Identities=11%  Similarity=0.026  Sum_probs=52.8

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcchhc
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYAVL   98 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~vL   98 (201)
                      .++|++...+..+            |..++..|+++.|+.++.++..++|....+--.+..+-...  ....-..|-+++
T Consensus        31 ~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~   98 (117)
T d1elwa_          31 KLDPHNHVLYSNR------------SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL   98 (117)
T ss_dssp             HHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcCCcchhhhhcc------------cccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3578888888888            89999999999999999999999998765443333332220  011122445556


Q ss_pred             cccCCCCCHHHHHHHHHHH
Q 037661           99 GIRDHRAGVDVIKKRYEAL  117 (201)
Q Consensus        99 gv~~~~as~~eIkkaYrkl  117 (201)
                      .+.+   +..++...+.++
T Consensus        99 ~~~p---~~~~~~~~l~~l  114 (117)
T d1elwa_          99 KHEA---NNPQLKEGLQNM  114 (117)
T ss_dssp             TTCT---TCHHHHHHHHHH
T ss_pred             HhCC---CCHHHHHHHHHH
Confidence            5555   445555555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.12  Score=35.16  Aligned_cols=45  Identities=20%  Similarity=0.196  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      ++..+.+.|..++..|+|++|+.+|.++..++|....+-..+..+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~   46 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAA   46 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccc
Confidence            456677889999999999999999999999999997655544443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.02  Score=41.18  Aligned_cols=84  Identities=14%  Similarity=0.024  Sum_probs=54.1

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcchhc
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYAVL   98 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~vL   98 (201)
                      .++|++...+...            |..++..|+++.|+.++.++.+++|....+-..+..+....  ......+|=+.+
T Consensus        38 ~~~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~  105 (159)
T d1a17a_          38 ELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV  105 (159)
T ss_dssp             HHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhh------------HHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3588999999888            99999999999999999999999998865544443333220  001111344455


Q ss_pred             cccCCCCCHHHHHHHHHHHHH
Q 037661           99 GIRDHRAGVDVIKKRYEALVQ  119 (201)
Q Consensus        99 gv~~~~as~~eIkkaYrkla~  119 (201)
                      .+.+   +..++...+.++..
T Consensus       106 ~~~p---~~~~~~~~l~~~~~  123 (159)
T d1a17a_         106 KVKP---HDKDAKMKYQECNK  123 (159)
T ss_dssp             HHST---TCHHHHHHHHHHHH
T ss_pred             HcCC---CCHHHHHHHHHHHH
Confidence            5555   33455555544433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.029  Score=39.16  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      .+|.+.++++..++..|+|++|+..|.++..++|....+...+..
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~   46 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAA   46 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHH
Confidence            368899999999999999999999999999999987654444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.33  Score=36.06  Aligned_cols=44  Identities=11%  Similarity=-0.090  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      |.-...++..++..|+++.|+..+.++..++|....+...+..+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~   80 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY   80 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchH
Confidence            34444559999999999999999999999999987665444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.42  E-value=0.05  Score=37.03  Aligned_cols=38  Identities=11%  Similarity=0.103  Sum_probs=25.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661           45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY   82 (201)
Q Consensus        45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~   82 (201)
                      +|..+++.|+++.|+..++++..++|....+-..+..+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~   59 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLT   59 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhh
Confidence            36777777777777777777777777765554444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.059  Score=37.77  Aligned_cols=46  Identities=11%  Similarity=-0.002  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHH
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVV   84 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v   84 (201)
                      +..+..+|..++..|+++.|+..+.++..++|....+..+...+..
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            3456678999999999999999999999999999877777665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.04  E-value=0.42  Score=32.00  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      .+..+..+|..++..|+++.|+..+.++.+++|....+.-.+..
T Consensus        49 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~   92 (112)
T d1hxia_          49 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   92 (112)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHH
Confidence            34445566778999999999999999999999998755444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.62  E-value=0.039  Score=40.02  Aligned_cols=42  Identities=19%  Similarity=0.088  Sum_probs=36.2

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      ++|++..++..+            |..++..|+++.|+..+.+|..++|.....
T Consensus        33 ~~p~~~~~~~~l------------g~~y~~~~~~~~Ai~~~~~al~l~p~~~~a   74 (201)
T d2c2la1          33 RNPLVAVYYTNR------------ALCYLKMQQPEQALADCRRALELDGQSVKA   74 (201)
T ss_dssp             HCSCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             hCCCCHHHHHhH------------HHHHhhhhhhhhhhHHHHHHHHhCCCcHHH
Confidence            467777777777            999999999999999999999999987544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.36  E-value=0.085  Score=38.09  Aligned_cols=34  Identities=12%  Similarity=0.017  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      ...+|..++..|+|+.|+.++.+|.+++|....+
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a  113 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA  113 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhH
Confidence            3445999999999999999999999999988644

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.082  Score=39.64  Aligned_cols=43  Identities=16%  Similarity=0.101  Sum_probs=34.4

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      ++|++..++...            |..++..|+++.|+..+.++..++|....+.
T Consensus        66 l~p~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  108 (259)
T d1xnfa_          66 IRPDMPEVFNYL------------GIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  108 (259)
T ss_dssp             HCCCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             cCCCCHHHHhhh------------chHHHHHHHHHHhhhhhhHHHHHHhhhhhhH
Confidence            456666666555            8899999999999999999999999875443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.17  Score=33.23  Aligned_cols=42  Identities=17%  Similarity=0.351  Sum_probs=34.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV   83 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   83 (201)
                      +..+|..+.+.|++++|+..++++..++|....+..-+..++
T Consensus        49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~   90 (95)
T d1tjca_          49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            344688899999999999999999999999986655554443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.70  E-value=0.24  Score=35.33  Aligned_cols=46  Identities=13%  Similarity=-0.012  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661           40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH   85 (201)
Q Consensus        40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~   85 (201)
                      +.+.-+|..+++.|+|+.|++++.++..+.|....+..+...++-.
T Consensus        74 d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence            5667889999999999999999999999999998777776665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.036  Score=38.68  Aligned_cols=47  Identities=9%  Similarity=0.076  Sum_probs=37.8

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      .++|++..++..+            |..++..|+|+.|+.++.++..++|........+
T Consensus        32 ~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~   78 (128)
T d1elra_          32 ELDPTNMTYITNQ------------AAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI   78 (128)
T ss_dssp             HHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HhCcccHHHHHhH------------HHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH
Confidence            3467777777777            9999999999999999999999998765444333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.14  Score=39.35  Aligned_cols=30  Identities=17%  Similarity=0.126  Sum_probs=18.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      +..++..|++++|+..+.++..++|....+
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  341 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            555666666666666666666666655433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=1.2  Score=33.84  Aligned_cols=27  Identities=19%  Similarity=0.203  Sum_probs=14.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      |..++..|++++|+..+.++.+++|..
T Consensus       213 g~~~~~~g~~~~A~~~~~~al~~~p~~  239 (323)
T d1fcha_         213 GATLANGNQSEEAVAAYRRALELQPGY  239 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhcccccccchhHHHHHHHHHHHhhcc
Confidence            444555555555555555555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.11  Score=34.28  Aligned_cols=34  Identities=15%  Similarity=0.074  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      |+.|.+++..++..|||..|+..+++|.++.|..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~   38 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEG   38 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Confidence            5678999999999999999999999999987765

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.25  Score=37.89  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=32.2

Q ss_pred             ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      +|++..++...            |..++..|++++|+..+.++.+++|....+
T Consensus        29 ~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~a   69 (388)
T d1w3ba_          29 EPDNTGVLLLL------------SSIHFQCRRLDRSAHFSTLAIKQNPLLAEA   69 (388)
T ss_dssp             CTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            55666655555            888999999999999999999999887543

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.67  E-value=0.5  Score=32.14  Aligned_cols=50  Identities=18%  Similarity=0.212  Sum_probs=40.9

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      .|++.+++++.+        .+..++.++..|++++++..+-+|..++|....+-.++
T Consensus        11 ~D~~~~e~~Fl~--------eV~lGE~Ll~~G~~~~g~~h~~nAi~Vc~qP~~LL~il   60 (95)
T d1om2a_          11 KDAEAVQKFFLE--------EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL   60 (95)
T ss_dssp             SSHHHHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCHHHHHHHHHH--------HHHHHHHHHhCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            466777777666        78899999999999999999999999999987554433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.62  E-value=0.68  Score=32.63  Aligned_cols=34  Identities=12%  Similarity=0.042  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      ...+|..+++.|+++.|+.++.++..++|....+
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka  103 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKA  103 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HhhHHHHHHHhcccchhhhhhhccccccchhhhh
Confidence            3457999999999999999999999999988543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=90.33  E-value=0.41  Score=34.33  Aligned_cols=33  Identities=15%  Similarity=0.050  Sum_probs=29.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLN   76 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~   76 (201)
                      .+|.+++..|+++.|+.++.++..++|....+-
T Consensus        69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~  101 (168)
T d1kt1a1          69 NLAMCYLKLREYTKAVECCDKALGLDSANEKGL  101 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHhhhcccchhhhhhhhhcccchHHHH
Confidence            478899999999999999999999999885443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.35  Score=37.16  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=24.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661           46 AEELFKEEKIDSALCVVDRARMKNPNHQGL   75 (201)
Q Consensus        46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~   75 (201)
                      |..++..|+++.|+..+.++..++|....+
T Consensus        60 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~   89 (323)
T d1fcha_          60 GTTQAENEQELLAISALRRCLELKPDNQTA   89 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHcCChHHHHHHHHhhhccccccccc
Confidence            778888888888888888888888876443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.67  E-value=1.8  Score=31.61  Aligned_cols=88  Identities=14%  Similarity=0.158  Sum_probs=57.1

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH---------HhhhccCcchh
Q 037661           27 REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK---------LAAEKKSWYAV   97 (201)
Q Consensus        27 ~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~---------~~~~~~d~Y~v   97 (201)
                      +.....++...-...+...++.++..|++++|+..+.++..++|..+.+...+..+....         ...-..-+.+-
T Consensus        55 ~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e  134 (179)
T d2ff4a2          55 VEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD  134 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            344444555555566777899999999999999999999999999876654443322110         00000112344


Q ss_pred             ccccCCCCCHHHHHHHHHHHH
Q 037661           98 LGIRDHRAGVDVIKKRYEALV  118 (201)
Q Consensus        98 Lgv~~~~as~~eIkkaYrkla  118 (201)
                      |||.+ .   .+++.-|.++.
T Consensus       135 LG~~P-~---~~l~~l~~~il  151 (179)
T d2ff4a2         135 LGIDP-G---PTLRALNERIL  151 (179)
T ss_dssp             HSCCC-C---HHHHHHHHHHH
T ss_pred             hCCCc-C---HHHHHHHHHHH
Confidence            89988 4   35777777764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.5  Score=34.78  Aligned_cols=39  Identities=5%  Similarity=-0.125  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      +..++..++..|+++.|+..|.+|.+++|....+-..+.
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g   77 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRG   77 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence            455699999999999999999999999999865443333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.22  E-value=0.8  Score=32.86  Aligned_cols=38  Identities=16%  Similarity=0.062  Sum_probs=31.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           43 KHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      ..+|..++..|+|+.|+.++.++..++|....+-..+.
T Consensus        66 ~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g  103 (170)
T d1p5qa1          66 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG  103 (170)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHH
Confidence            34788899999999999999999999998765443333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=86.77  E-value=0.53  Score=37.05  Aligned_cols=48  Identities=15%  Similarity=-0.021  Sum_probs=37.4

Q ss_pred             CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      .+|.+..+...-            +..++..|+|++|+..++++.+++|........+..
T Consensus        25 ~~P~d~~ar~~L------------a~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~   72 (264)
T d1zbpa1          25 ASPKDASLRSSF------------IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH   72 (264)
T ss_dssp             TCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            455666655555            999999999999999999999999988665554443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=0.43  Score=35.18  Aligned_cols=40  Identities=18%  Similarity=0.192  Sum_probs=34.6

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH   72 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~   72 (201)
                      .+||++..++..+            +..++..|++++|+..+.+|....+..
T Consensus        64 ~ldp~~~~a~~~~------------g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          64 NRDKHLAVAYFQR------------GMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHhhhhhhhHHHH------------HHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            4678888888888            999999999999999999999876654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.55  E-value=2.4  Score=28.79  Aligned_cols=37  Identities=11%  Similarity=0.065  Sum_probs=30.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661           44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA   80 (201)
Q Consensus        44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~   80 (201)
                      +++..++..++++.|...|+++..++|....+.--+.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a   40 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYA   40 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            4678899999999999999999999999865544333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.72  E-value=0.66  Score=32.65  Aligned_cols=49  Identities=14%  Similarity=0.222  Sum_probs=35.5

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELFK-----------EEKIDSALCVVDRARMKNPNHQGLNSHFAC   81 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~-----------~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~   81 (201)
                      .+||++..++...            +..+..           .+.|..|+.++.+|..++|........+..
T Consensus        69 ~l~P~~~~a~~~l------------G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          69 LIDPKKDEAVWCI------------GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHCTTCHHHHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhcchhhHHHhhH------------HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence            4678888777766            444443           345899999999999999998765555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.33  E-value=0.75  Score=32.33  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=35.4

Q ss_pred             CCChhhHHHHHHhhCHHHHHHHHHHHHHHH----------hcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661           21 FNNPEAREALFSKLADKEAEASKHMAEELF----------KEEKIDSALCVVDRARMKNPNHQGLNSHF   79 (201)
Q Consensus        21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l----------~~~d~~~A~~~~~~a~~~~p~~~~~~~~l   79 (201)
                      .+||++..++...            +..++          ..+.++.|+..+.+|.+++|....+--.+
T Consensus        25 ~~~P~~~~~~~~~------------g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1          25 KSNPLDADNLTRW------------GGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             HHCTTCHHHHHHH------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhCCcchHHHHHH------------HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            4688888888877            55544          34567899999999999999986554333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=80.23  E-value=1  Score=31.60  Aligned_cols=36  Identities=17%  Similarity=0.008  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661           38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ   73 (201)
Q Consensus        38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~   73 (201)
                      +|...+..+..++..|+|++|+..|.+|..++|...
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~   43 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMP   43 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhh
Confidence            345566679999999999999999999999998764