Citrus Sinensis ID: 037690

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
SVEGRLISTISKKPHPNDAAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNKFAFILSKFI
cccccccccccccccHHHHHHHHHHHHHHccEEEEEEEccccccccEEEEEEccccccccccccEEEEEEcccHHHHHHHccccEEEEEEEcccccccccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEEEEcccccEEccHHHHcccccccHHHHHcccc
ccccHHHHccccccccHHHHHHHHHHHHHcccEEEEEEccccccccccEEEEcccccccccccEEEEEEEcccccHHHHHccccEEEEEEccccccccccccccccEEEEEEEEEEEEccccHHHHHHHHHHHHHHcHHHHcccccccEEEEEEEEEEEEEEEccccccEccHHHHHccccHHHHHHHHHHc
svegrlistiskkphpndaAAFARWLVSQNYWGVLNTISsdlggapfgnvvsfsdglpnegsgvpyfylttldptarnaLRDKRsslaiseyplgtcgerdpenpacakitltgKLVLVDVSTKEAEFAEHAlftkhpemmdwpedhnfqiFKLEIEDIFLinwfggrkpltvdQYLHTKMNKFAFILSKFI
svegrlistiskkphpndAAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYplgtcgerdpeNPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNKFAFILSKFI
SVEGRLISTISKKPHPNDAAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNKFAFILSKFI
******************AAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNA*******LAISEYPLGTCG*****NPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNKFAFILS***
******************AAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLG**G**DPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNKFAFILSKFI
SVEGRLISTISKKPHPNDAAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNKFAFILSKFI
*****LISTISKKPHPNDAAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNKFAFILSKFI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SVEGRLISTISKKPHPNDAAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNKFAFILSKFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query192 2.2.26 [Sep-21-2011]
Q8IUH2290 Protein CREG2 OS=Homo sap yes no 0.869 0.575 0.375 6e-30
O75629220 Protein CREG1 OS=Homo sap no no 0.901 0.786 0.368 2e-27
Q8BGC9288 Protein CREG2 OS=Mus musc yes no 0.875 0.583 0.350 4e-27
O88668220 Protein CREG1 OS=Mus musc no no 0.869 0.759 0.335 3e-24
Q5ZJ73192 Protein CREG1 OS=Gallus g no no 0.859 0.859 0.393 4e-24
>sp|Q8IUH2|CREG2_HUMAN Protein CREG2 OS=Homo sapiens GN=CREG2 PE=1 SV=1 Back     alignment and function desciption
 Score =  130 bits (327), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 6/173 (3%)

Query: 9   TISKKPHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPY 66
           T S  P P   AA AR L   + WG L T+S+   + G PFGN +  SDG  N  +G+P+
Sbjct: 113 TASAPPGPRLRAATARSLAHASVWGCLATVSTHKKIQGLPFGNCLPVSDGPFNNSTGIPF 172

Query: 67  FYLTTLDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKITLTGKLVLVDVSTK 124
           FY+T  DP   + +++  +SL + E     C +   DPE+P C ++TLTG+++ V  S +
Sbjct: 173 FYMTAKDPVVADLMKNPMASLMLPESEGEFCRKNIVDPEDPRCVQLTLTGQMIAV--SPE 230

Query: 125 EAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYL 177
           E EFA+ A+F++HP M  WP  + +   K+ IE I+L  W+GG   ++ ++Y 
Sbjct: 231 EVEFAKQAMFSRHPGMRKWPRQYEWFFMKMRIEHIWLQKWYGGASSISREEYF 283

Homo sapiens (taxid: 9606)
>sp|O75629|CREG1_HUMAN Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BGC9|CREG2_MOUSE Protein CREG2 OS=Mus musculus GN=Creg2 PE=1 SV=1 Back     alignment and function description
>sp|O88668|CREG1_MOUSE Protein CREG1 OS=Mus musculus GN=Creg1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJ73|CREG1_CHICK Protein CREG1 OS=Gallus gallus GN=CREG1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
225452574209 PREDICTED: protein CREG1 [Vitis vinifera 0.968 0.889 0.776 2e-80
357503801208 Protein CREG1 [Medicago truncatula] gi|3 0.968 0.894 0.743 4e-80
388494576208 unknown [Medicago truncatula] 0.968 0.894 0.737 2e-79
351721270202 uncharacterized protein LOC100306499 [Gl 0.963 0.915 0.752 2e-79
255552734201 Protein CREG1 precursor, putative [Ricin 0.927 0.885 0.783 5e-78
118488211208 unknown [Populus trichocarpa] 0.932 0.860 0.767 1e-77
224056881191 predicted protein [Populus trichocarpa] 0.927 0.931 0.772 3e-77
388494214239 unknown [Lotus japonicus] 0.942 0.757 0.730 2e-75
297831546206 cellular repressor of E1A-stimulated gen 0.927 0.864 0.703 4e-70
22325479210 Pyridoxamine 5'-phosphate oxidase family 0.911 0.833 0.710 3e-69
>gi|225452574|ref|XP_002280727.1| PREDICTED: protein CREG1 [Vitis vinifera] gi|296087727|emb|CBI34983.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/188 (77%), Positives = 162/188 (86%), Gaps = 2/188 (1%)

Query: 1   SVEGRLISTISKKPHPNDAAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNE 60
           SV GRL+S    KP P+DAAA ARWLVSQN WGVLNTISSDLGGAPFGNVVSFSDGLP+E
Sbjct: 24  SVHGRLLSV--SKPDPDDAAATARWLVSQNNWGVLNTISSDLGGAPFGNVVSFSDGLPDE 81

Query: 61  GSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLVLVD 120
           G G+PYFYLTTLDPTARNAL D+RSSL ISEYP+GTCG++DPENP+CAKITLTGKL LVD
Sbjct: 82  GHGIPYFYLTTLDPTARNALSDQRSSLTISEYPIGTCGKKDPENPSCAKITLTGKLKLVD 141

Query: 121 VSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTK 180
             +KEA+FA +ALF+KHPEM  WP+ HNFQ F L+IEDIFLI+WFGG KPLTVDQYLH K
Sbjct: 142 EKSKEADFARNALFSKHPEMKGWPKGHNFQFFTLDIEDIFLIDWFGGPKPLTVDQYLHPK 201

Query: 181 MNKFAFIL 188
             K AF L
Sbjct: 202 TYKLAFTL 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357503801|ref|XP_003622189.1| Protein CREG1 [Medicago truncatula] gi|355497204|gb|AES78407.1| Protein CREG1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388494576|gb|AFK35354.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|351721270|ref|NP_001235924.1| uncharacterized protein LOC100306499 [Glycine max] gi|255628717|gb|ACU14703.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255552734|ref|XP_002517410.1| Protein CREG1 precursor, putative [Ricinus communis] gi|223543421|gb|EEF44952.1| Protein CREG1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118488211|gb|ABK95925.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056881|ref|XP_002299070.1| predicted protein [Populus trichocarpa] gi|222846328|gb|EEE83875.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388494214|gb|AFK35173.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297831546|ref|XP_002883655.1| cellular repressor of E1A-stimulated genes family [Arabidopsis lyrata subsp. lyrata] gi|297329495|gb|EFH59914.1| cellular repressor of E1A-stimulated genes family [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22325479|ref|NP_178546.2| Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana] gi|19715626|gb|AAL91634.1| At2g04690/F28I8.27 [Arabidopsis thaliana] gi|21928075|gb|AAM78066.1| At2g04690/F28I8.27 [Arabidopsis thaliana] gi|330250762|gb|AEC05856.1| Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
TAIR|locus:2049234210 AT2G04690 [Arabidopsis thalian 0.937 0.857 0.697 1.3e-66
ZFIN|ZDB-GENE-041114-173279 creg2 "cellular repressor of E 0.890 0.612 0.382 5.4e-31
UNIPROTKB|Q5ZJ73192 CREG1 "Protein CREG1" [Gallus 0.859 0.859 0.410 4.9e-30
UNIPROTKB|Q8IUH2290 CREG2 "Protein CREG2" [Homo sa 0.864 0.572 0.377 1.6e-29
UNIPROTKB|F1NRF8184 CREG1 "Protein CREG1" [Gallus 0.848 0.885 0.404 9.1e-29
UNIPROTKB|F1PVI3220 CREG1 "Uncharacterized protein 0.838 0.731 0.395 1.5e-28
UNIPROTKB|J9NRR0217 CREG1 "Uncharacterized protein 0.838 0.741 0.395 1.5e-28
UNIPROTKB|F1MX50221 CREG1 "Uncharacterized protein 0.838 0.728 0.401 6.4e-28
UNIPROTKB|O75629220 CREG1 "Protein CREG1" [Homo sa 0.869 0.759 0.381 6.4e-28
UNIPROTKB|F1STG3282 CREG2 "Uncharacterized protein 0.828 0.563 0.385 1e-27
TAIR|locus:2049234 AT2G04690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 127/182 (69%), Positives = 153/182 (84%)

Query:     7 ISTISKKPHPNDAAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPY 66
             + TI+K P  +D AA ARWLVSQN WGVL+T+S D  GAPFGNVVSFSDGLP +G+G+PY
Sbjct:    31 VLTITK-PDRHDYAASARWLVSQNSWGVLSTLSVDHKGAPFGNVVSFSDGLPEKGNGIPY 89

Query:    67 FYLTTLDPTARNALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLVLVDVSTKEA 126
             FYLTTLDPTARNAL+D+R+SLAISE PLGTC  RDP NP C+K+TLTGKL++++  ++EA
Sbjct:    90 FYLTTLDPTARNALKDQRASLAISESPLGTC-TRDPMNPTCSKLTLTGKLLILEGGSEEA 148

Query:   127 EFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNKFAF 186
             E A+ ALFTKHPEMMDWP+DH+F+ FKLEI DIFLINW+GG KP+TVD+YLH K  K A 
Sbjct:   149 EVAKKALFTKHPEMMDWPKDHDFRFFKLEIIDIFLINWYGGAKPITVDEYLHAKSIKLAS 208

Query:   187 IL 188
              L
Sbjct:   209 FL 210
GO:0005576 "extracellular region" evidence=ISM
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA
ZFIN|ZDB-GENE-041114-173 creg2 "cellular repressor of E1A-stimulated genes 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ73 CREG1 "Protein CREG1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IUH2 CREG2 "Protein CREG2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRF8 CREG1 "Protein CREG1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVI3 CREG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRR0 CREG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MX50 CREG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O75629 CREG1 "Protein CREG1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1STG3 CREG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020813001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (202 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
pfam13883167 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosph 2e-75
>gnl|CDD|222433 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information 
 Score =  223 bits (571), Expect = 2e-75
 Identities = 82/169 (48%), Positives = 111/169 (65%), Gaps = 6/169 (3%)

Query: 14  PHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 71
           P   +AA  AR LV +  WG L+TIS+  D+GGAPFGNVVS SDG P + +G PYF LT 
Sbjct: 1   PTREEAAKVARTLVHRADWGALSTISTHKDVGGAPFGNVVSVSDGPPGDSTGNPYFLLTD 60

Query: 72  LDPTARNALRDKRSSLAISEYPLGTCGE--RDPENPACAKITLTGKLVLVDVSTKEAEFA 129
           LD T +N  ++ R+SL +SE   G C +   DPE+P C +ITLTGKL    V ++E +FA
Sbjct: 61  LDSTVQNLQKNPRASLTLSEAQTGFCKKHGVDPEDPTCPRITLTGKLK--KVPSEERDFA 118

Query: 130 EHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLH 178
           + A F++HP+  DW   HNF  +KLEIE+I+L+  FGG   +T ++Y  
Sbjct: 119 KKAFFSRHPDAKDWLPGHNFHFYKLEIENIYLLGGFGGAAYITAEEYYK 167

Length = 167

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 192
PF13883170 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase 100.0
KOG3374210 consensus Cellular repressor of transcription [Tra 100.0
PRK03467144 hypothetical protein; Provisional 99.78
TIGR03668141 Rv0121_F420 PPOX class probable F420-dependent enz 99.71
TIGR03618117 Rv1155_F420 PPOX class probable F420-dependent enz 99.6
TIGR03666132 Rv2061_F420 PPOX class probable F420-dependent enz 99.59
PF0124389 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase 99.57
TIGR03667130 Rv3369 PPOX class probable F420-dependent enzyme, 99.55
PF12900143 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I 99.52
COG3467166 Predicted flavin-nucleotide-binding protein [Gener 99.44
COG0748245 HugZ Putative heme iron utilization protein [Inorg 99.42
COG0748245 HugZ Putative heme iron utilization protein [Inorg 99.19
PRK05679195 pyridoxamine 5'-phosphate oxidase; Provisional 99.17
COG3871145 Uncharacterized stress protein (general stress pro 99.12
COG3787145 Uncharacterized protein conserved in bacteria [Fun 99.03
PRK06733151 hypothetical protein; Provisional 98.93
TIGR00558217 pdxH pyridoxamine-phosphate oxidase. This model is 98.9
PLN03049462 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr 98.65
COG0259214 PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta 98.6
COG5015132 Uncharacterized conserved protein [Function unknow 98.54
PLN02918544 pyridoxine (pyridoxamine) 5'-phosphate oxidase 98.11
PF04299169 FMN_bind_2: Putative FMN-binding domain; InterPro: 97.84
TIGR00026113 hi_GC_TIGR00026 deazaflavin-dependent nitroreducta 97.79
KOG2586228 consensus Pyridoxamine-phosphate oxidase [Coenzyme 97.76
PF04075132 DUF385: Domain of unknown function (DUF385) ; Inte 97.22
PF12766100 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase 97.21
COG2808209 PaiB Transcriptional regulator [Transcription] 96.63
COG3576173 Predicted flavin-nucleotide-binding protein struct 94.17
PF04289177 DUF447: Protein of unknown function (DUF447); Inte 87.45
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C Back     alignment and domain information 
Probab=100.00  E-value=3.6e-45  Score=287.35  Aligned_cols=163  Identities=41%  Similarity=0.738  Sum_probs=125.9

Q ss_pred             CCchHHHHHHHHHHhhCCEEEEEeecC--CCCCCeeeeEeccccCCCCCCCCceEEEEecCChhhHhhhcCCCeEEEEee
Q 037690           14 PHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISE   91 (192)
Q Consensus        14 p~~~~~a~~ar~Ll~~~~~~~LAT~~~--~~~G~P~~S~v~y~d~~~~~~~g~~~~~~s~~s~h~~Nl~~np~vSl~v~~   91 (192)
                      |+..++++.||+||+.+++|+|||++.  +.+|+||+|+++|+||+..+.+|+|||++|.++.|++||++||||||+|.+
T Consensus         1 P~~~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~   80 (170)
T PF13883_consen    1 PTREEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISE   80 (170)
T ss_dssp             --TT-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEG
T ss_pred             CChHHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEec
Confidence            788999999999999999999999998  337999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC--CCCCCCCCcceEEEEEEEEEecCCcHHHHHHHHHHHHhCCCCcCCCCC---CCeEEEEEEEeEEEEeccCC
Q 037690           92 YPLGTCG--ERDPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPED---HNFQIFKLEIEDIFLINWFG  166 (192)
Q Consensus        92 ~~~~~~~--~~dp~~~~~~rvtl~G~~~~i~~~~~e~~~~~~~~~~rhP~~~~~~~~---~df~~~~l~~~~~~~v~GFG  166 (192)
                      .....|.  ..||+.++++|+||+|++++|+.  +|.+.+++||++|||+|+.|+++   |||.||||+|++++||||||
T Consensus        81 ~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~--~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG  158 (170)
T PF13883_consen   81 PQGGDCDNSGVDPEDPACPRVTLTGRAEPVPP--DEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFG  158 (170)
T ss_dssp             GGSSHHHHHT--TTSTTS-EEEEEEEEEE--T--TTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSS
T ss_pred             CCCCcccccCCCCCCCCCcEEEEEEEEEEcCc--hHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccC
Confidence            9875442  25788789999999999999984  46778999999999999999999   99999999999999999999


Q ss_pred             CCcccChhhhcC
Q 037690          167 GRKPLTVDQYLH  178 (192)
Q Consensus       167 ~a~~i~~~~~~~  178 (192)
                      +++||+++||.+
T Consensus       159 ~~~~i~~~~Y~~  170 (170)
T PF13883_consen  159 GAAWISAEEYYN  170 (170)
T ss_dssp             S-EEE-HHHHHH
T ss_pred             CceEeCHHHhcC
Confidence            999999999963

>KOG3374 consensus Cellular repressor of transcription [Transcription] Back     alignment and domain information
>PRK03467 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family Back     alignment and domain information
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme Back     alignment and domain information
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family Back     alignment and domain information
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1 Back     alignment and domain information
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family Back     alignment and domain information
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) Back     alignment and domain information
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only] Back     alignment and domain information
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK06733 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00558 pdxH pyridoxamine-phosphate oxidase Back     alignment and domain information
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information
>COG5015 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [] Back     alignment and domain information
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein Back     alignment and domain information
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces Back     alignment and domain information
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E Back     alignment and domain information
>COG2808 PaiB Transcriptional regulator [Transcription] Back     alignment and domain information
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only] Back     alignment and domain information
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
1xhn_A184 The Crystal Structure Of Cellular Repressor Of E1a- 1e-27
2arz_A247 Crystal Structure Of Protein Of Unknown Function Fr 9e-04
>pdb|1XHN|A Chain A, The Crystal Structure Of Cellular Repressor Of E1a- Stimulated Genes (Creg) Length = 184 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 14  PHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 71
           P   DAA  AR++   + WG L TIS+   + G PF +V+S SDG P  GSGVPYFYL+ 
Sbjct: 14  PPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSP 73
Query: 72  LDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKITLTGKLVLVDVSTKEAEFA 129
           L  +  N   +  ++L  +      C +   DP++P C  I L+G   +  V+  E + A
Sbjct: 74  LQLSVSNLQENPYATLTXTLAQTNFCKKHGFDPQSPLCVHIXLSG--TVTKVNETEXDIA 131
Query: 130 EHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMN 182
           +H+LF +HPE   WP  HN+   KL I +I+++++FGG K +T ++Y +  + 
Sbjct: 132 KHSLFIRHPEXKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNVTVQ 184
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From Pseudomonas Aeruginosa Length = 247 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 1e-50
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 3e-25
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 5e-21
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 8e-20
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 4e-08
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 7e-08
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Length = 184 Back     alignment and structure
 Score =  161 bits (407), Expect = 1e-50
 Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 6/173 (3%)

Query: 13  KPHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPYFYLT 70
            P   DAA  AR++   + WG L TIS+   + G PF +V+S SDG P  GSGVPYFYL+
Sbjct: 13  LPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLS 72

Query: 71  TLDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKITLTGKLVLVDVSTKEAEF 128
            L  +  N   +  ++L ++      C +   DP++P C  I L+G +  V+    E + 
Sbjct: 73  PLQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVN--ETEMDI 130

Query: 129 AEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKM 181
           A+H+LF +HPEM  WP  HN+   KL I +I+++++FGG K +T ++Y +  +
Sbjct: 131 AKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNVTV 183
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258 Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Length = 157 Back     alignment and structure
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 100.0
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 100.0
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 100.0
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 100.0
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 100.0
3tgv_A148 Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} 99.98
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 99.96
2hq7_A146 Protein, related to general stress protein 26(GS2 99.83
2iab_A155 Hypothetical protein; NP_828636.1, structural geno 99.82
2asf_A137 Hypothetical protein RV2074; H37RV, structural gen 99.8
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 99.8
3ec6_A139 General stress protein 26; alpha-beta structure, s 99.8
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 99.79
2re7_A134 Uncharacterized protein; general stress protein CO 99.78
2fhq_A141 Putative general stress protein; alpha-beta struct 99.77
1rfe_A162 Hypothetical protein RV2991; structural genomics, 99.75
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 99.75
3u5w_A148 Putative uncharacterized protein; ssgcid, seattle 99.74
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 99.72
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 99.7
3dmb_A147 Putative general stress protein 26 with A PNP-OXI 99.7
3fkh_A138 Putative pyridoxamine 5'-phosphate oxidase; NP_601 99.69
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 99.67
2qea_A160 Putative general stress protein 26; structural gen 99.66
2fg9_A178 5-nitroimidazole antibiotic resistance protein; ST 99.66
2hq9_A149 MLL6688 protein; structural genomics, joint center 99.65
2hti_A185 BH0577 protein; structural genomics, joint center 99.65
3cp3_A148 Uncharacterized protein; alpha-beta fold, structur 99.64
3u35_A182 General stress protein; PNP-oxidase like fold, FMN 99.63
2htd_A140 Predicted flavin-nucleotide-binding protein from f 99.6
2fur_A209 Hypothetical protein; structural genomics, joint c 99.56
2q9k_A151 Uncharacterized protein; split barrel-like fold, s 99.55
2vpa_A216 NIMA-related protein; cofactor, atomic resolution, 99.55
3ba3_A145 Protein LP_0091, pyridoxamine 5'-phosphate oxidase 99.42
2ol5_A202 PAI 2 protein; structural genomics, PSI-2, protein 99.38
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 99.37
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 99.34
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 99.25
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 99.25
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 99.23
2ou5_A175 Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; 99.19
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 99.14
3in6_A148 FMN-binding protein; structural genomics, joint ce 98.84
3a6r_A122 FMN-binding protein; electron transport, flavoprot 98.69
3r5l_A122 Deazaflavin-dependent nitroreductase; PA-824, spli 98.27
3r5z_A145 Putative uncharacterized protein; split barrel-lik 97.71
3h96_A143 F420-H2 dependent reductase A; pnpox, flavin, afla 97.58
3r5y_A147 Putative uncharacterized protein; PA-824, nitroimi 97.56
2ptf_A233 Uncharacterized protein MTH_863; structural genomi 80.6
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Back     alignment and structure
Probab=100.00  E-value=1.8e-39  Score=256.41  Aligned_cols=168  Identities=39%  Similarity=0.749  Sum_probs=147.0

Q ss_pred             CCCCchHHHHHHHHHHhhCCEEEEEeecCCC--CCCeeeeEeccccCCCCCCCCceEEEEecCChhhHhhhcCCCeEEEE
Q 037690           12 KKPHPNDAAAFARWLVSQNYWGVLNTISSDL--GGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAI   89 (192)
Q Consensus        12 ~~p~~~~~a~~ar~Ll~~~~~~~LAT~~~~~--~G~P~~S~v~y~d~~~~~~~g~~~~~~s~~s~h~~Nl~~np~vSl~v   89 (192)
                      -+|+..+.++++|+||+++++++|||++++.  +|+||+|+|+|++||+.+.+|.+||+++..++|++||++||||||+|
T Consensus        12 ~~~~~~~~~~~ar~ll~~~~~g~LaTi~~~~~~dG~P~~s~v~~~~~~~~d~~g~~~f~~s~~~~~~~nl~~nprvSl~v   91 (184)
T 1xhn_A           12 SLPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTM   91 (184)
T ss_dssp             CCCCTTCHHHHHHHHHHHCSEEEEEEECCCGGGTTCEEEEEEECBSCSTTCCCSCCEEEECTTSHHHHHHHHCCEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHhCCEEEEEecccCCCCCCcceEEEEEEEeccCcCCCCCEEEEEeCccHhHHHHhhCCCEEEEE
Confidence            3677888999999999999999999998621  49999999999966543677999999999999999999999999999


Q ss_pred             eeCCCCCCCC--CCCCCCCcceEEEEEEEEEecCCcHHHHHHHHHHHHhCCCCcCCCCCCCeEEEEEEEeEEEEeccCCC
Q 037690           90 SEYPLGTCGE--RDPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGG  167 (192)
Q Consensus        90 ~~~~~~~~~~--~dp~~~~~~rvtl~G~~~~i~~~~~e~~~~~~~~~~rhP~~~~~~~~~df~~~~l~~~~~~~v~GFG~  167 (192)
                      .+++..+|++  .+|..+.++||+++|+++++++  +|.++++++|+++||+++.|.+.++|.||||+|+++++++|||+
T Consensus        92 ~~~~~~~~~~~~~dp~~~~~~rvtl~G~a~~v~d--~e~~~~~~~~~~~hP~~~~~~~~~~~~~~~l~i~~i~~v~gFG~  169 (184)
T 1xhn_A           92 TLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNE--TEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG  169 (184)
T ss_dssp             EGGGTTHHHHHTCCTTSTTSCEEEEEEEEEECCG--GGHHHHHHHHHHHCGGGGGSCGGGCCEEEEEEEEEEEEECSSSS
T ss_pred             ecCCCccccccCCCCccccCceEEEEEEEEECCh--HHHHHHHHHHHHHCcChhHcccCCCEEEEEEEEeEEEEEccCCc
Confidence            9876433322  3555445899999999999985  36789999999999999999999999999999999999999999


Q ss_pred             CcccChhhhcCCCc
Q 037690          168 RKPLTVDQYLHTKM  181 (192)
Q Consensus       168 a~~i~~~~~~~a~~  181 (192)
                      ++||+++||.+|++
T Consensus       170 ~~~v~~~~~~~a~~  183 (184)
T 1xhn_A          170 PKIVTPEEYYNVTV  183 (184)
T ss_dssp             CEECCHHHHHHCC-
T ss_pred             eEEeCHHHHhhccC
Confidence            99999999999876
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Back     alignment and structure
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Back     alignment and structure
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Back     alignment and structure
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP} Back     alignment and structure
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Back     alignment and structure
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1 Back     alignment and structure
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Back     alignment and structure
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Back     alignment and structure
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum} Back     alignment and structure
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A Back     alignment and structure
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Back     alignment and structure
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Back     alignment and structure
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Back     alignment and structure
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Back     alignment and structure
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp} Back     alignment and structure
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A* Back     alignment and structure
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A* Back     alignment and structure
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica} Back     alignment and structure
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str} Back     alignment and structure
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica} Back     alignment and structure
>2ptf_A Uncharacterized protein MTH_863; structural genomics, unknown function, PSI-2, protein struct initiative; HET: FMN; 2.35A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.45.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 192
d1xhna1170 b.45.1.1 (A:13-182) Cellular repressor of E1A-stim 4e-55
d2arza1238 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps 3e-30
d1vl7a_135 b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob 1e-18
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (432), Expect = 4e-55
 Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 6/169 (3%)

Query: 14  PHPNDAAAFARWLVSQNYWGVLNTISSD--LGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 71
           P   DAA  AR++   + WG L TIS+   + G PF +V+S SDG P  GSGVPYFYL+ 
Sbjct: 2   PPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSP 61

Query: 72  LDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKITLTGKLVLVDVSTKEAEFA 129
           L  +  N   +  ++L ++      C +   DP++P C  I L+G +  V+    E + A
Sbjct: 62  LQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVN--ETEMDIA 119

Query: 130 EHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLH 178
           +H+LF +HPEM  WP  HN+   KL I +I+++++FGG K +T ++Y +
Sbjct: 120 KHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYN 168
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238 Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
d1xhna1170 Cellular repressor of E1A-stimulated genes CREG1 { 100.0
d2arza1238 Hypothetical protein PA4388 {Pseudomonas aeruginos 100.0
d1vl7a_135 Hypothetical protein Alr5027 {Cyanobacterium (Nost 100.0
d2i02a1143 General stress protein 26 {Nostoc punctiforme pcc 99.77
d2hq7a1141 Hypotheical protein CAC3491 {Clostridium acetobuty 99.76
d1rfea_160 Hypothetical protein Rv2991 {Mycobacterium tubercu 99.74
d2asfa1125 Hypothetical protein Rv2074 {Mycobacterium tubercu 99.74
d2fg9a1157 5-nitroimidazole resistance protein BT3078 {Bacter 99.74
d2fhqa1135 Putative general stress protein BT1439 {Bacteroide 99.73
d2hq9a1148 Hypothetical protein Mll6688 {Mesorhizobium loti [ 99.71
d1w9aa_142 Hypothetical protein Rv1155 {Mycobacterium tubercu 99.69
d2htia1156 Hypothetical protein BH0577 {Bacillus halodurans [ 99.67
d2fura1193 Hypothetical protein Ta1372 {Thermoplasma acidophi 99.59
d2vpaa1194 NimA-related protein DR0842 {Deinococcus radiodura 99.54
d1flma_122 FMN-binding protein {Desulfovibrio vulgaris, strai 99.46
d1ci0a_205 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake 98.64
d1t9ma_204 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu 98.63
d1dnla_199 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch 98.61
d2a2ja1201 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco 98.52
d1nrga_213 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma 98.46
d2ptfa1206 Uncharacterized protein MTH863 {Methanobacterium t 91.98
d2imla1189 Hypothetical protein AF1834 {Archaeoglobus fulgidu 91.27
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-48  Score=299.11  Aligned_cols=166  Identities=39%  Similarity=0.760  Sum_probs=153.2

Q ss_pred             CCCchHHHHHHHHHHhhCCEEEEEeecCC--CCCCeeeeEeccccCCCCCCCCceEEEEecCChhhHhhhcCCCeEEEEe
Q 037690           13 KPHPNDAAAFARWLVSQNYWGVLNTISSD--LGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAIS   90 (192)
Q Consensus        13 ~p~~~~~a~~ar~Ll~~~~~~~LAT~~~~--~~G~P~~S~v~y~d~~~~~~~g~~~~~~s~~s~h~~Nl~~np~vSl~v~   90 (192)
                      +|+..++++.||.|++++++|+|||++.+  .+|+||+|+|+|+||+..+.+|.||||+|.++.|++||++||+|||+|.
T Consensus         1 ~P~~~~~a~~AR~L~~~~~~g~LsTiS~~~~~~G~P~~s~v~~adg~~~~~~G~P~~llS~la~ht~Nl~~~~~vSL~v~   80 (170)
T d1xhna1           1 LPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTMT   80 (170)
T ss_dssp             CCCTTCHHHHHHHHHHHCSEEEEEEECCCGGGTTCEEEEEEECBSCSTTCCCSCCEEEECTTSHHHHHHHHCCEEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHhCCEEEEEEcccCCCCCCccceeEEEEeccCCCCCCCCEEEEEcChhHhHHHHhhCCCeEEEEE
Confidence            58899999999999999999999999853  2799999999999999889999999999999999999999999999999


Q ss_pred             eCCCCCCC--CCCCCCCCcceEEEEEEEEEecCCcHHHHHHHHHHHHhCCCCcCCCCCCCeEEEEEEEeEEEEeccCCCC
Q 037690           91 EYPLGTCG--ERDPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGR  168 (192)
Q Consensus        91 ~~~~~~~~--~~dp~~~~~~rvtl~G~~~~i~~~~~e~~~~~~~~~~rhP~~~~~~~~~df~~~~l~~~~~~~v~GFG~a  168 (192)
                      +.+...|.  ..||+.+.++||||+|+++++++  +|.+.++++|++|||+|+.|+++|||.||||+|++++||||||++
T Consensus        81 ~~~~~~~~~~~~dp~~p~~aRlTl~G~~~~v~~--~e~~~a~~~yl~rHP~a~~w~~~~df~f~~l~i~~i~~vgGFG~~  158 (170)
T d1xhna1          81 LAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNE--TEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGP  158 (170)
T ss_dssp             GGGTTHHHHHTCCTTSTTSCEEEEEEEEEECCG--GGHHHHHHHHHHHCGGGGGSCGGGCCEEEEEEEEEEEEECSSSSC
T ss_pred             ecCCCcccccCCCccCCCCcEEEEEEEEEECCc--HHHHHHHHHHHHHHHHHHhCcccCCeEEEEEEeeEEEEECccCcc
Confidence            98765443  36888889999999999999974  477889999999999999999999999999999999999999999


Q ss_pred             cccChhhhcCCC
Q 037690          169 KPLTVDQYLHTK  180 (192)
Q Consensus       169 ~~i~~~~~~~a~  180 (192)
                      +||+.+||.+|+
T Consensus       159 ~~i~~~eY~~at  170 (170)
T d1xhna1         159 KIVTPEEYYNVT  170 (170)
T ss_dssp             EECCHHHHHHCC
T ss_pred             eEeCHHHHhhcC
Confidence            999999999874
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]} Back     information, alignment and structure
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2imla1 b.45.1.4 (A:1-189) Hypothetical protein AF1834 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure